Citrus Sinensis ID: 039828

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620------
Protein Sequence
MSETFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMMTLLVLLIVYIRDQLFQPGRTSFGNLLKLIDNLGRTSNATPVNQKAMKDRINNLLVVAALIAGASFAASVQMSSSHSESQTNTTASIIIRGAGAAPFALPCSNGHGGCDESQKKQRTWIKVFTVSNTIAMYTSITAAVLLCSLQLLNTKLASLEFSFASLSTVIALYTSCIAFYASIHMSTYTGREFIVVMAAIQGWILLFRLPRFIFPFQGEKRYILFVYAFRLASLYFLNRIRISQKKTRR
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHccccccccHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHcHHccccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHccccccccccccccHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHcccccccccccccccccccHHHccccccccEEEEHHHHHHHHHHHHHHHHHHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHcccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccEccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccHHHcccccHHHHHHHcccHHHHHHHHHccccccHcccccccHHHHHHccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHEEEccccccc
Coil and Loop (DISEMBL)
msetfktitspsgntLLHIAAAGSIRNHENMAMATTLARKYPFLitmqnskgdtplhVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDakkdknkpkedgvtSLDSLARSLvsedpnasylmnvdcksplylavesKNEDILEYILEAlpvnddcdaklegkspVKVAIELQKLGLLKMMHDKQPALLLIQDeqmntpmhwAASVDHLEGVRflyeinpdsvlqkneeglypfhlasangcvpvmgeflekenmphpnelfnnkgQNILHVAAKKGRDVSVTHILEASDLTDKLINemdddgntpLHLAALYGHYFVAVILgkdgraesDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMMTLLVLLIVYIRdqlfqpgrtsfGNLLKLIDnlgrtsnatpvnqKAMKDRINNLLVVAALIAGASFAASVqmssshsesqtntTASIIIrgagaapfalpcsnghggcdesqkKQRTWIKVFTVSNTIAMYTSITAAVLLCSLQLLNTKLASLEFSFASLSTVIALYTSCIAFYASIHMSTYTGREFIVVMAAIQGWILLFrlprfifpfqgekRYILFVYAFRLASLYFLNRIRISQKKTRR
Flexible Loop (DISEMBL)
msetfktitspsgntLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALqdakkdknkpkedgvtslDSLARSLVsedpnasylmnVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMMTLLVLLIVYIRDQLFQPGRTSFGNLLKLIDNLGRTSNATPVNQKAMKDRINNLLVVAALIAGASFAASVQMSSSHSESQTNTTASIIIRGAGAAPFALPCSNGHGGCDESQKKQRTWIKVFTVSNTIAMYTSITAAVLLCSLQLLNTKLASLEFSFASLSTVIALYTSCIAFYASIHMSTYTGREFIVVMAAIQGWILLFRLPRFIFPFQGEKRYILFVYAFRLASlyflnririsqkktrr
Low Complexity Region (SEG)
MSETFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMMTLLVLLIVYIRDQLFQPGRTSFGNLLKLIDNLGRTSNATPVNQKAMKDRINNLLVVaaliagasfaasvqmssshsesQTNTTASIIIRGAGAAPFALPCSNGHGGCDESQKKQRTWIKVFTVSNTIAMYTSITAAVLLCSLQLLNTKlaslefsfaslsTVIALYTSCIAFYASIHMSTYTGREFIVVMAAIQGWillfrlprfifpfQGEKRYILFVYAFRLASLYFLNRIRISQKKTRR
Disordered region (IsUnstruct)
**************TLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNV*********************************************SYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK********LFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMMTLLVLLIVYIRDQLFQPGRTSFGNLLKLIDNLGRTSNATPVNQKAMKDRINNLLVVAALIAGASFAA*****************SIIIRGAGAAPFALPCSNGHGGCD****KQRTWIKVFTVSNTIAMYTSITAAVLLCSLQLLNTKLASLEFSFASLSTVIALYTSCIAFYASIHMSTYTGREFIVVMAAIQGWILLFRLPRFIFPFQGEKRYILFVYAFRLASLYFLNRIRI*******
Disordered Region (DISOPRED)
*SETFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMMTLLVLLIVYIRDQLFQPGR***********************QKAMKDRINNLLVVAALIAGASFAASVQMSSSHSESQTNTTASIIIRGAGAAPFALPCSNGHGGCDESQKKQRTWIKVFTVSNTIAMYTSITAAVLLCSLQLLNTKLASLEFSFASLSTVIALYTSCIAFYASIHMSTYTGREFIVVMAAIQGWILLFRLPRFIFPFQGEKRYILFVYAFRLASLYFLN***********
Disordered Region (DISEMBL)
**********PSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAK*************LDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMMTLLVLLIVYIRDQLFQPGRTSFGNLLKLIDNLGRTSNATPVNQKAMKDRINNLLVVAALIAGASFA***************TTASIIIRGAGAAPFALPCSNG**********QRTWIKVFTVSNTIAMYTSITAAVLLCSLQLLNTKLASLEFSFASLSTVIALYTSCIAFYASIHMSTYTGREFIVVMAAIQGWILLFRLPRFIFPFQGEKRYILFVYAFRLASLYFLNRIRISQKKTRR
Disordered Region (DISPRO)
*****KTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMMTLLVLLIVYIRDQLFQPGRTSFGNLLKLIDNLGRTSNATPVNQKAMKDRINNLLVVAALIAGASFAASVQMSSSHSESQTNTTASIIIRGAGAAPFALPCSNGHGGCDESQKKQRTWIKVFTVSNTIAMYTSITAAVLLCSLQLLNTKLASLEFSFASLSTVIALYTSCIAFYASIHMSTYTGREFIVVMAAIQGWILLFRLPRFIFPFQGEKRYILFVYAFRLASLYFLNRIRISQ*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSETFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMMTLLVLLIVYIRDQLFQPGRTSFGNLLKLIDNLGRTSNATPVNQKAMKDRINNLLVVAALIAGASFAASVQMSSSHSESQTNTTASIIIRGAGAAPFALPCSNGHGGCDESQKKQRTWIKVFTVSNTIAMYTSITAAVLLCSLQLLNTKLASLEFSFASLSTVIALYTSCIAFYASIHMSTYTGREFIVVMAAIQGWILLFRLPRFIFPFQGEKRYILFVYAFRLASLYFLNRIRISQKKTRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	626	2.2.26 [Sep-21-2011]
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.554	0.652	0.238	6e-14
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.573	0.685	0.245	3e-13
Q5F478	990	Serine/threonine-protein	yes	no	0.501	0.317	0.252	8e-11
Q86YT6	1006	E3 ubiquitin-protein liga	yes	no	0.353	0.219	0.307	2e-10
Q80SY4	1006	E3 ubiquitin-protein liga	yes	no	0.353	0.219	0.307	2e-10
O89019	1062	Inversin OS=Mus musculus	no	no	0.345	0.203	0.268	2e-10
Q02989	1411	Alpha-latroinsectotoxin-L	N/A	no	0.488	0.216	0.251	2e-10
Q502K3	1071	Serine/threonine-protein	no	no	0.337	0.197	0.257	3e-10
Q8BZ25	745	Ankyrin repeat and protei	no	no	0.439	0.369	0.276	4e-10
Q71S21	1002	Inversin-B OS=Xenopus lae	N/A	no	0.492	0.307	0.254	5e-10

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 167/402 (41%), Gaps = 55/402 (13%)

Query: 149 KSPLYLAVESKNEDILEYI-----LEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMH 203
           ++ +Y++     EDI  Y+     LE + +    D      +   VA +   LG++K + 
Sbjct: 60  ETAVYISAAENLEDIFRYLIRFSSLETVKIRSKSDM-----NAFHVAAKRGHLGIVKELL 114

Query: 204 DKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGC 263
              P L  I D    +P++ AA  DHLE V  + +++P   +   + G    H A   G 
Sbjct: 115 RLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGL 174

Query: 264 VPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDD 323
           + ++   +EK+       + + KGQ  LH+A  KGR + V   +  +D T  ++NE D  
Sbjct: 175 LRIVKALIEKD--AAIVGVKDKKGQTALHMAV-KGRSLEVVEEILQADYT--ILNERDRK 229

Query: 324 GNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQ-QYAKIIPEFSENDDD 382
           GNT LH+A       +  +L      E + IN   +TA D+A++ QY++   E +E    
Sbjct: 230 GNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINE---- 285

Query: 383 MMTLLVLLIVYIRDQLFQPGRTSFGNLLKLIDNLGRTSNATPVNQKA--MKDRINNLLVV 440
                          L + G    G        +GR   A  + +    +K  + + L+ 
Sbjct: 286 --------------ALVEAG-AKHGRF------IGREDEARALKRAVSDIKHEVQSQLLQ 324

Query: 441 AALIAGASFAASVQMSSSHSESQTNTTASIIIRG------AGAAPFALP----CSNGHGG 490
                      + ++   H E+  NTT SI +        A  A F LP        H G
Sbjct: 325 NEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVG 384

Query: 491 CDESQKKQRTWIKVFTVSNTIAMYTSITAAVLLCSLQLLNTK 532
             ++    RT  +VF + N  +++ S+   V+  +L   +T+
Sbjct: 385 --QANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTR 424

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 174/415 (41%), Gaps = 56/415 (13%)

Query: 91  EMKNVRGNTALHEALNALQDAKKD---KNKPKEDGVTSLDSLARSLVSEDPNASYLMNVD 147
           +M   R +T LH    A+++ K D   +   + DGV   + LA              N  
Sbjct: 11  QMTARRDDTPLH---TAVREGKTDLLLEMIGEHDGVELKELLAEQ------------NQS 55

Query: 148 CKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKS---PVKVAIELQKLGLLKMMHD 204
            ++ LY+A E    D+++ +++    +D   A  + K+      +A +   L +L ++ +
Sbjct: 56  GETALYVAAEYGYTDMVKILMKH---SDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIE 112

Query: 205 KQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCV 264
             P L    D    T +H AAS  H E V FL +   D        G    H A+ NG  
Sbjct: 113 ANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHT 172

Query: 265 PVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDG 324
            ++ + +EK+         + KGQ  LH+A  KG++  +  +L  +D    LIN  D+ G
Sbjct: 173 VIVKKLIEKK--AGMVTRVDKKGQTALHMAV-KGQNTEIVDVLMEAD--GSLINSADNKG 227

Query: 325 NTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ-YAKIIP--------- 374
           NTPLH+A       +   + K        +N  G+TA DIAE+    +I+P         
Sbjct: 228 NTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQN 287

Query: 375 ----------EFSENDDDMMTLLVLLIVYIRDQLFQPGRTSFGNLLKLIDNLGRTSNATP 424
                     E S +   +   +  +   +  QL Q GRT      + I  + +  N   
Sbjct: 288 ARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTR-----REIQGIAKRVN--K 340

Query: 425 VNQKAMKDRINNLLVVAALIAGASFAASVQMSSSHSESQTNTTASIIIRGAGAAP 479
           ++ + + + IN+  +VA LIA  +FAA   +   +++   +      +  A AAP
Sbjct: 341 MHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAP 395

Arabidopsis thaliana (taxid: 3702)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 152/361 (42%), Gaps = 47/361 (13%)

Query: 46  TMQNSKGDTPLHVAARDGMLQTAKILVDCAKRM-TSSSQIDVKFLMEMKNVRGNTALHEA 104
           ++Q+ +G   +H AA  G  Q  ++L++    M   S     K  + +    G+   H+A
Sbjct: 526 SIQDKEGYNTVHYAAAYGHRQCLELLLEKNSNMFEESDSSATKSPLHLAAYNGH---HQA 582

Query: 105 LNALQDAKKDKNKPKEDGVTSLDSLA--------RSLVSEDPNASYLMNVDCKSPLYLAV 156
           L  L  +  D +   E G T+LD  A         +L+S+  + +   NV  ++PL+ +V
Sbjct: 583 LEVLLQSLVDLDIKDEKGRTALDLAAFKGHAECVEALISQGASVTVKDNVTKRTPLHASV 642

Query: 157 ESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQ 216
            + +   L  +LE     D  DAK  G++P+ +A+    +  + ++ +K+ A +   D  
Sbjct: 643 INGHTPCLRLLLEVADNPDVTDAK--GQTPLMLAVAYGHIDAVSLLLEKE-ASVDAADLL 699

Query: 217 MNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENM 276
             T +H      H E V+ L E    S+L K+  G  P H A+A G    + E L+    
Sbjct: 700 GCTALHRGIMTGHEECVQMLLE-KEVSILCKDARGRTPLHFAAARGHATWLSELLQIALS 758

Query: 277 PHPNELFNNKGQNILHVAAKKGRDVSVTHILE--------------------------AS 310
                L +N+G   LH A   G +  +  +LE                          AS
Sbjct: 759 EEDCSLKDNQGYTPLHWACYNGHENCIEVLLEQKFFRKFYGNSFSPLHCAVINDHENCAS 818

Query: 311 DLTD----KLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAE 366
            L       ++N  DD G TPLH AA   H     +L     A+ + ++  G+TA  +A 
Sbjct: 819 MLIGAIDASIVNCKDDKGRTPLHAAAFADHVECLQLL-LSHSAQVNAVDHAGKTALMMAA 877

Query: 367 Q 367
           Q
Sbjct: 878 Q 878

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 13/234 (5%)

Query: 144 MNVDCKSPLYLAVESKNE--DILEYILEALPVNDDCDAK-LEGKSPVKVAIELQKLGLLK 200
           +N  C     +   S+N   DIL+ +L+    N D +A+  +G   V  A    +  +++
Sbjct: 458 VNGQCAGHTAMQAASQNGHVDILKLLLKQ---NVDVEAEDKDGDRAVHHAAFGDEGAVIE 514

Query: 201 MMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASA 260
           ++H +  A L  ++++  TP+H A +  HL+ V+ L +      LQ + EG  P H A +
Sbjct: 515 VLH-RGSADLNARNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSLQ-DSEGDTPLHDAIS 572

Query: 261 NGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEM 320
                ++   LE         + NN G N LH AA +G + S   +L +      +++E 
Sbjct: 573 KKRDDILAVLLE---AGADVTITNNNGFNALHHAALRG-NPSAMRVLLSKLPRPWIVDEK 628

Query: 321 DDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA-EQQYAKII 373
            DDG T LHLAAL  H  VA +L   G A  DI N   QTA  +A E+Q+ +I+
Sbjct: 629 KDDGYTALHLAALNNHVEVAELLVHQGNANLDIQNVNQQTALHLAVERQHTQIV 682

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. Probably mediates ubiquitination and subsequent proteasomal degradation of DAPK1, thereby antagonizing anti-apoptotic effects of DAPK1 to promote TNF-induced apoptosis (By similarity). Mediates 'Lys-63'-linked polyubiquitination of TBK1, which probably participates in kinase activation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 13/234 (5%)

Query: 144 MNVDCKSPLYLAVESKNE--DILEYILEALPVNDDCDAK-LEGKSPVKVAIELQKLGLLK 200
           +N  C     +   S+N   DIL+ +L+    N D +A+  +G   V  A    +  +++
Sbjct: 458 VNGQCAGHTAMQAASQNGHVDILKLLLKQ---NVDVEAEDKDGDRAVHHAAFGDEGAVIE 514

Query: 201 MMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASA 260
           ++H +  A L  ++++  TP+H A +  HL+ V+ L +      LQ + EG  P H A +
Sbjct: 515 VLH-RGSADLNARNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSLQ-DSEGDTPLHDAIS 572

Query: 261 NGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEM 320
                ++   LE         + NN G N LH AA +G + S   +L +      +++E 
Sbjct: 573 KKRDDILAVLLE---AGADVTITNNNGFNALHHAALRG-NPSAMRVLLSKLPRPWIVDEK 628

Query: 321 DDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA-EQQYAKII 373
            DDG T LHLAAL  H  VA +L   G A  DI N   QTA  +A E+Q+ +I+
Sbjct: 629 KDDGYTALHLAALNNHVEVAELLVHQGNANLDIQNVNQQTALHLAVERQHTQIV 682

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. Mediates 'Lys-63'-linked polyubiquitination of TBK1, which probably participates in kinase activation (By similarity). Probably mediates ubiquitination and subsequent proteasomal degradation of DAPK1, thereby antagonizing anti-apoptotic effects of DAPK1 to promote TNF-induced apoptosis.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O89019|INVS_MOUSE Inversin OS=Mus musculus GN=Invs PE=1 SV=2

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 11/227 (4%)

Query: 130 ARSLVSEDPNASYLMNVDCKSPLYLAVESKNED---ILEYILEALPVNDDCDAK-LEGKS 185
           A+ L+  D N   + +V+ K PL+ A   K+      +  IL+A P     + +  EG++
Sbjct: 165 AKLLIKHDSNIG-IPDVEGKIPLHWAANHKDPSAVHTVRCILDAAPTESLLNWQDYEGRT 223

Query: 186 PVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVL 245
           P+  A+    L ++ ++   +   +   D    TP+HWAA + H + V  L E N    +
Sbjct: 224 PLHFAVADGNLTVVDVLTSYESCNITSYDNLFRTPLHWAALLGHAQIVHLLLERNKSGTI 283

Query: 246 QKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTH 305
             + +G  P H A+ +     +  FL+  ++   ++L   +G+     AA KG D  +  
Sbjct: 284 PSDSQGATPLHYAAQSNFAETVKVFLQHPSVKDDSDL---EGRTSFMWAAGKGNDDVLRT 340

Query: 306 ILEASDLTDKLINEMDDDGNTPLHLAALYGHY-FVAVILGKDGRAES 351
           +L      D  IN  D  G T LH AAL GH   V ++L  D + ++
Sbjct: 341 MLSLKSDID--INMSDKYGGTALHAAALSGHVSTVKLLLDNDAQVDA 385

Required for normal renal development and establishment of left-right axis. Probably acts as a molecular switch between different Wnt signaling pathways. Inhibits the canonical Wnt pathway by targeting cytoplasmic disheveled (DVL1) for degradation by the ubiquitin-proteasome. This suggests that it is required in renal development to oppose the repression of terminal differentiation of tubular epithelial cells by Wnt signaling (By similarity). Involved in the organization of apical junctions in kidney cells together with NPHP1, NPHP4 and RPGRIP1L/NPHP8. Does not seem to be strictly required for ciliogenesis.

Mus musculus (taxid: 10090)

>sp|Q02989|LITA_LATTR Alpha-latroinsectotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 153/366 (41%), Gaps = 60/366 (16%)

Query: 8   ITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQT 67
           I S  G T LH+A   +++N  N++++  LA K  +L    ++ G TPLH AA  G L+ 
Sbjct: 630 IKSKVGLTPLHLA---TLQN--NLSVSKLLAGKGAYL-NDGDANGMTPLHYAAMTGNLEM 683

Query: 68  AKIL-------VDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKE 120
              L       ++ A +    + + +  L +  +V       E LN   +     N    
Sbjct: 684 VDFLLNQQYININAATKEKKWTPLHLAILFKKNDVAERLLSDENLNIRLETNGGINPLHL 743

Query: 121 DGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILE-ALPVNDDCDA 179
              T    L   L++++ + + L +    S L+L +  KNE+I  +++E    VND  ++
Sbjct: 744 ASATGNKQLVIELLAKNADVTRLTSKGF-SALHLGIIGKNEEIPFFLVEKGANVNDKTNS 802

Query: 180 KLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEI 239
              G +P+  A  L K  + +++  +  A +  +D     P+H A S  HLE VR L E 
Sbjct: 803 ---GVTPLHFAAGLGKANIFRLLLSR-GADIKAEDINSQMPIHEAVSNGHLEIVRILIEK 858

Query: 240 NPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGR 299
           +P  +  KN    YPF+LA       +   F+ K                          
Sbjct: 859 DPSLMNVKNIRNEYPFYLAVEKRYKDIFDYFVSK-------------------------- 892

Query: 300 DVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQ 359
                         D  +NE+D +GNT LHL +  G   V   L ++G A   + N   +
Sbjct: 893 --------------DANVNEVDHNGNTLLHLFSSTGELEVVQFLMQNG-ANFRLKNNERK 937

Query: 360 TAYDIA 365
           T +D+A
Sbjct: 938 TFFDLA 943

Insecticidal presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism (By similarity). The toxin forms channels with 0.55-0.58 nm entrance diameter and a relatively small conductance in planar phospholipid membranes.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 114/249 (45%), Gaps = 38/249 (15%)

Query: 149 KSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPA 208
           ++PL++A  ++    +E +L  +   +  D    G++P+  A +     ++K++ +K  A
Sbjct: 108 QTPLHIAAANRATRCVETLLPHVSSLNMADRT--GRAPLHHAAQSGYQEMVKLLLNKG-A 164

Query: 209 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMG 268
            L   D++   P+HWAA + HLE V+ L     D    K++ G  P H A+A+G V V+ 
Sbjct: 165 NLSASDKKDRQPIHWAAYLGHLEVVKLLVSQGSDKSC-KDKRGYTPLHAAAASGHVDVVK 223

Query: 269 EFLEK-ENMPHPNELFN-------------------NKGQNI----------LHVAAKKG 298
             L     +  PN   N                   N+G N+          LH+AA   
Sbjct: 224 YLLRNGAEIDEPNAFGNTALHVACYTGQEAVANELVNRGANVNQPNHRGYTPLHLAAVST 283

Query: 299 RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYG 358
                  +L  ++  D  +N    +G +PLH+AA++G +  + IL ++G  E D ++ YG
Sbjct: 284 NGALCLELL-VNNGAD--VNMQSKEGKSPLHMAAIHGRFTRSQILIQNG-GEIDCVDRYG 339

Query: 359 QTAYDIAEQ 367
            T   +A +
Sbjct: 340 NTPLHVAAK 348

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|Q8BZ25|ANKK1_MOUSE Ankyrin repeat and protein kinase domain-containing protein 1 OS=Mus musculus GN=Ankk1 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 139/315 (44%), Gaps = 40/315 (12%)

Query: 47  MQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALH---- 102
           + +  G  PLH AA++G   TA++L+D               L+  +   G T LH    
Sbjct: 431 LADEDGWAPLHFAAQNGDDHTARLLLDHGA------------LVNAREHEGWTPLHLAAQ 478

Query: 103 ---EALNALQDAKKDKNKPKE-DGVTSLDSLAR-------SLVSEDPNASYLMNVDCKSP 151
              E +  L  +++    P E +G T L   A         L+S           + ++P
Sbjct: 479 NNFENVARLLVSRQADLSPHEAEGKTPLHVAAYFGHIGLVKLLSGQGAELDAQQRNLRTP 538

Query: 152 LYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLL 211
           L+LAVE      ++++L+   + D  D    G SP+ +A    K  + KM+  +  A L 
Sbjct: 539 LHLAVERGKVRAIQHLLKCGALPDALDHS--GYSPLHIAAARGKDLIFKML-LRYGASLE 595

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
           ++ +Q  TP+H A    HLE +  L + + D     + +   P HLA+  G   VM   L
Sbjct: 596 LRTQQGWTPLHLATYKGHLEIIHQLAKSHVDLDALGSMQ-WTPLHLAAFQGEEGVMLALL 654

Query: 272 EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE-ASDLTDKLINEMDDDGNTPLHL 330
           +    P+  E     G   LH+A  KG  + +TH+LE  +D     I+  +  G TP HL
Sbjct: 655 QCGANPNAAE---QSGWTPLHLAVHKGTFLGITHLLEYGAD-----IHACNKVGWTPAHL 706

Query: 331 AALYGHYFVAVILGK 345
           AAL G+  +  +L K
Sbjct: 707 AALKGNTAILKVLVK 721

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q71S21|INVSB_XENLA Inversin-B OS=Xenopus laevis GN=invs-b PE=1 SV=1

 Score = 67.0 bits (162), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 149/354 (42%), Gaps = 46/354 (12%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKIL 71
           SG T LH+AA     NH  + +  +  RK     T ++    T LH++ R    Q   +L
Sbjct: 76  SGRTALHLAAQTG--NHRLLKLLLS--RKAD--CTHRDLCDITALHLSTRHQDTQCLVLL 129

Query: 72  VDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLAR 131
           +    + T   Q+D +      + R  TALH +           N+P+           R
Sbjct: 130 L----KYTPPGQVDAQ------DQRKQTALHWSAYY--------NRPQH---------VR 162

Query: 132 SLVSEDPNASYLMNVDCKSPLYLAVESKNED---ILEYILEALPVNDDCDAK-LEGKSPV 187
            LV    N   + + + K PL+ A   K+ +    +  + EA P     + +  EG++P+
Sbjct: 163 LLVRHGSNIG-IPDTEGKIPLHWAAGHKDPEAALTVRCLFEAAPTESLLNWQDYEGRTPL 221

Query: 188 KVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQK 247
            +A+      +++++   +   +   D    TP+HWAA + H      L E N    +  
Sbjct: 222 HLAVGDGNQEVVRLLTSYRGCNVAPYDNLFRTPLHWAALLGHTPIAHLLLERNNSPNIPS 281

Query: 248 NEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL 307
           + +G  P H A+   C   +   L   + P   +  + +G+  L  AA KG D  V  +L
Sbjct: 282 DSQGATPLHYAAQGNCPDTVRVLL---SHPSVRDEADLEGRTALMWAAGKGSDEVVRTML 338

Query: 308 EASDLTDKL-INEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQT 360
           E   L  KL +N  D  G T LH A+L G      IL  + RA++D ++    T
Sbjct: 339 E---LNPKLEVNRTDKYGGTALHAASLSGQITTVRIL-LENRAQADAVDVMKHT 388

Required for normal renal development and establishment of left-right axis. Probably acts as a molecular switch between different Wnt signaling pathways. Inhibits the canonical Wnt pathway by targeting cytoplasmic disheveled for degradation by the ubiquitin-proteasome. This suggests that it is required in renal development to oppose the repression of terminal differentiation of tubular epithelial cells by Wnt signaling. Plays a central role in convergent extension movements in gastrulating embryos, a processus regulated by Wnt signaling.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	626
224124524	673	predicted protein [Populus trichocarpa]	0.789	0.734	0.324	1e-64
224106698	703	predicted protein [Populus trichocarpa]	0.854	0.761	0.299	7e-64
302143275	671	unnamed protein product [Vitis vinifera]	0.861	0.803	0.301	3e-63
225446327	666	PREDICTED: ankyrin repeat-containing pro	0.861	0.809	0.301	4e-63
224127174	708	predicted protein [Populus trichocarpa]	0.872	0.771	0.305	9e-62
224124528	705	predicted protein [Populus trichocarpa]	0.544	0.483	0.375	8e-59
225446912	996	PREDICTED: uncharacterized protein LOC10	0.793	0.498	0.336	4e-57
225446312	677	PREDICTED: ankyrin repeat-containing pro	0.803	0.742	0.324	5e-57
224127170	655	predicted protein [Populus trichocarpa]	0.798	0.763	0.308	5e-57
224106702	428	predicted protein [Populus trichocarpa]	0.559	0.817	0.379	6e-57

>gi|224124524|ref|XP_002319353.1| predicted protein [Populus trichocarpa] gi|222857729|gb|EEE95276.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 199/613 (32%), Positives = 303/613 (49%), Gaps = 119/613 (19%)

Query: 6   KTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGML 65
           K + +P+GN+LLH+A +    N     + + LA  +P LIT+QNS+ DT LH+AAR+G  
Sbjct: 45  KELQTPAGNSLLHVAVSYGSDN-----ITSYLAETFPSLITIQNSQKDTILHLAAREG-- 97

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTS 125
           + +  +   A+   S        LM   N +GNT LH+A+                 +  
Sbjct: 98  KASHTIKSLAESNPS--------LMRKTNTKGNTPLHDAV-----------------IKG 132

Query: 126 LDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNE-DILEYILE---ALPV-NDDCDAK 180
              LA  LVS+DP  +Y  N + +SPLYLAVE+ N+ +IL+Y+L+   + P+ ++D DA 
Sbjct: 133 NKELAIFLVSKDPEVAYYNNKNGRSPLYLAVENGNKKEILDYLLKTEASFPIESEDGDAL 192

Query: 181 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEIN 240
            +GKSPV  AIE +   +L+ +   +P LL + D+++   +H+A+S   LEGV+FL +  
Sbjct: 193 PKGKSPVHAAIEQRNRDILEKIEKAKPELLCLTDKELGNSLHYASSRGFLEGVQFLLQKF 252

Query: 241 PDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRD 300
            +   ++N EG YP HLA  N  V V+ EFL+    P P E  N KGQNILHVAA+ G+ 
Sbjct: 253 LNGAYKRNHEGNYPIHLACKNDSVDVVKEFLKI--TPFPKEFLNEKGQNILHVAAENGKG 310

Query: 301 VSVTHIL-EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQ 359
             V +IL +   L + L+NEMD+DGNTPLHLA  +G    A +L +D R +S I+N    
Sbjct: 311 NVVRYILRQEKTLVEPLLNEMDEDGNTPLHLATSHGQSVAAFVLVRDKRVDSSIVNNENL 370

Query: 360 TAYDIAEQQYAKIIPEFSENDDDM------------------------------------ 383
           T YDIAE+Q +KI  E  E  D+M                                    
Sbjct: 371 TPYDIAEKQ-SKIAVEQYEKTDEMLAEDRKQFDSKNSTPADKTKDKKQDTKKASRKHYEL 429

Query: 384 ------MTLLVLLIVYIRDQLFQPGRTSFGNLLKLIDNLGRTSNATPVNQKAMKDRINNL 437
                 MT L +L  + R     P ++ +            ++   P  ++  K R  NL
Sbjct: 430 VDYYGAMTTLSILYFHAR-----PKKSLYERF--------TSTQGKPPRKQETKSRTENL 476

Query: 438 LVVAALIAGASFAASVQM-------SSSHSESQTNTTASIIIRGAGAAPFALPCSNGHGG 490
           LVVA L+ G +FA ++QM       +SS    + N+TA+     A     AL    G   
Sbjct: 477 LVVAVLVVGVTFAGAIQMPQLRDKNNSSEHLQEFNSTAT-----ASRNSTALDSPTGSSL 531

Query: 491 CDESQKKQRTWIKVFTVSNTIAMYTSITAAVLLCSLQLLNTKLASLEFSFASLSTVIALY 550
            D            +   +  A+ TS+ AA++L    L + K A     F+SL    ++Y
Sbjct: 532 LDG-----------YLCLDVWALNTSVVAAIILLWTNLNDVKFAPFALWFSSLMVGGSIY 580

Query: 551 TSCIAFYASIHMS 563
             C++F+ ++ ++
Sbjct: 581 MMCLSFFFAVSIA 593

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106698|ref|XP_002333641.1| predicted protein [Populus trichocarpa] gi|222837929|gb|EEE76294.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (642), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 194/648 (29%), Positives = 306/648 (47%), Gaps = 113/648 (17%)

Query: 1   MSETFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAA 60
           +S    T  SPSGN+LLH++A+   ++     +   L + +P L+  +N   DT LH+AA
Sbjct: 69  LSSIIYTQVSPSGNSLLHVSASNGSKH-----VTELLLQHFPLLMMRKNFHDDTALHLAA 123

Query: 61  RDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKE 120
             G L TA +L++ AK    +S       +EMKN RGNTALH+A+               
Sbjct: 124 GAGQLGTATVLINKAKGHGGASHF--PNFLEMKNDRGNTALHDAV--------------- 166

Query: 121 DGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCD-- 178
             +     LA  LVSE    SY  N + KSPLYLAVE+ +E +L  +++   + DD D  
Sbjct: 167 --INGHGILAHFLVSESLKLSYSENNERKSPLYLAVENSDEKMLTTLMDT--IRDDVDLL 222

Query: 179 AKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE 238
            KLEGKSPV  A++ +K  +L+ +  K+P LL  +DE+   P+H AA + ++   +FL+ 
Sbjct: 223 NKLEGKSPVHAAVQGRKRTILEQIAKKKPGLLRRKDEKGENPLHCAAYMGYVWETQFLFN 282

Query: 239 INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKG 298
              D  +Q+N+EG  P H+AS  G V V+  ++ K     P E  N+K QNILHVAA++G
Sbjct: 283 EYRDGAIQQNDEGNMPIHVASKKGYVDVVDAYISK--WTDPAEFLNSKRQNILHVAAERG 340

Query: 299 RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYG 358
           R   V +IL   +L + LIN+ D DGNTPLHLA+  G       L ++     D  N   
Sbjct: 341 RHRVVKYILRNKNL-EALINKQDLDGNTPLHLASKNGGSIATFTLVRNSMVMKDKANGEN 399

Query: 359 QTAYDIAEQQYAKI--------IPEFSENDDD---------------------------- 382
            T Y++A++Q   +        IP   +N+ D                            
Sbjct: 400 LTPYEVAKKQSKMVGAEFSGEPIPNGKDNNVDPKSDSINGEKPQTKDKPDHGVGNQDGPD 459

Query: 383 --------------MMTLLVLLIVYIRDQLFQPGRTSFGNLLKLIDNLGRTSNATPVNQK 428
                         MMTL +L         +   +TS     ++         + P+ ++
Sbjct: 460 DRKGGKGKLDYYGVMMTLSIL-------HFWAGHKTSKVEYFRI--------KSRPLPKE 504

Query: 429 AMKDRINNLLVVAALIAGASFAASVQMSSSHSESQTNTTASIIIRGAGAAPFALPCSNGH 488
            +K RI++LLVVA LIAG +F+  +Q+  +    ++              P  +  +N  
Sbjct: 505 EIKGRIDSLLVVAVLIAGVTFSGILQLPRNADLPES-------------GPSNITTTNST 551

Query: 489 GGCDESQKKQRTWIKVFTVSNTIAMYTSITAAVLLCSLQLLNTKLASLEFSFASLSTVIA 548
                S K +     V+   + +A+  ++ A+++LC  QL + K+A+     AS+ T  A
Sbjct: 552 QNQGISAKNEGILRNVYIYFDMVALNAAVMASIILCWAQLYDVKVAAHAVWLASILTGGA 611

Query: 549 LYTSCIAFYASIHMSTYTGREFIVVMAAIQGWILLFR----LPRFIFP 592
           +Y  C+AF  ++ +       F VV   + G   +F+    +P  I P
Sbjct: 612 IYLMCLAFVFAVAIDVGKNFAFFVVTIVVGGAFFIFQTVVSIPLIIPP 659

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143275|emb|CBI21836.3| unnamed protein product [Vitis vinifera]

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 187/621 (30%), Positives = 297/621 (47%), Gaps = 82/621 (13%)

Query: 1   MSETFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAA 60
           ++  F  +T P  NTLLH+AAA       N+ +   +  +YP+L T  NS GDT LH+AA
Sbjct: 87  LASIFDQVT-PLKNTLLHVAAASG-----NLEIVALIVYRYPWLATKTNSNGDTALHLAA 140

Query: 61  RDGMLQTAKILV-----DCAKRMTSSSQIDVK------FLMEMKNVRGNTALHEALNALQ 109
           + G   T  ++V     D   + +  S++ VK           +N +GNTALHEAL    
Sbjct: 141 KAGDELTLSVIVQLLTSDVHSQSSGYSRVWVKEVEDDDLPFRKRNKQGNTALHEAL---- 196

Query: 110 DAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169
                        +     +A +L   DP   + +N + KSPLYLA E+  +  +  +L+
Sbjct: 197 -------------INGHQWVALNLFGSDPQVVFYLNREGKSPLYLAAEAGYDSCVLAMLK 243

Query: 170 ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDH 229
               +++ + +L+GKSP+  A   ++ G+L +M  K P+++  +DE+  TP+H+AAS+ H
Sbjct: 244 VPVGSENPNTRLKGKSPIHAATRERQSGVLDIMLKKDPSMIYSRDEEGRTPLHYAASIGH 303

Query: 230 LEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQN 289
           L+GV +L        ++++  G +P H+AS  G V V+ E L   + P P EL ++ GQN
Sbjct: 304 LKGVHYLLGKYALGAVERDNSGFFPIHMASIKGHVDVIRELL--RHCPDPRELLSDNGQN 361

Query: 290 ILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRA 349
           ILHVAA  G+   V+ IL+  +L  KLINE D  GNTPLHLA ++ H  +   L  D R 
Sbjct: 362 ILHVAAINGKYEVVSCILKTPEL-GKLINEKDKVGNTPLHLATMHWHPMIVSALTGDERV 420

Query: 350 ESDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMMTLLVLLIVYIRDQLFQPGRTSFGNL 409
           +  ++N  G TA+D AE     + P                + +   ++    R +    
Sbjct: 421 DLKLLNNEGLTAFDAAEYYMETLAPYHKR------------LTWTALRVAGAPRATCPKP 468

Query: 410 LKLIDNLGRTS-NATPVNQKAMKDRINNLLVVAALIAGASFAASVQMSSSHSESQTNTTA 468
           LK I   G++S    P      +DR+N LL+VA L+A  SFAA   +   ++ S+ +   
Sbjct: 469 LKAI---GQSSVQVEPPKMDIYRDRVNTLLLVATLVATVSFAAGFTVPGGYNNSEPDQGM 525

Query: 469 SIIIRGAGAAPFALPCSNGHGGCDESQKKQRTWIKVFTVSNTIAMYTSITAAVLLCSLQL 528
           + ++R                      KK     +VF   + IAMY+SI  A+ L   QL
Sbjct: 526 ATMLR---------------------HKK----FQVFIFCDMIAMYSSIIVAISLIWAQL 560

Query: 529 LNTKLASLEFSFASLSTVIALYTSCIAFYASIHMSTYTGREFIVVMAAIQGWILLFRLPR 588
            + +L       A     ++L T  +AF A + +   +   ++     I G++ L  L  
Sbjct: 561 CDLRLVLTALRVALPLLGVSLATMSLAFMAGVSL-VVSNLNWLSNTVLITGFLFLIILVI 619

Query: 589 FIFPF---QGEKRYILFVYAF 606
             FP       + YIL   +F
Sbjct: 620 LFFPLCSPTSSRNYILRRISF 640

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446327|ref|XP_002273773.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 187/621 (30%), Positives = 297/621 (47%), Gaps = 82/621 (13%)

Query: 1   MSETFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAA 60
           ++  F  +T P  NTLLH+AAA       N+ +   +  +YP+L T  NS GDT LH+AA
Sbjct: 87  LASIFDQVT-PLKNTLLHVAAASG-----NLEIVALIVYRYPWLATKTNSNGDTALHLAA 140

Query: 61  RDGMLQTAKILV-----DCAKRMTSSSQIDVK------FLMEMKNVRGNTALHEALNALQ 109
           + G   T  ++V     D   + +  S++ VK           +N +GNTALHEAL    
Sbjct: 141 KAGDELTLSVIVQLLTSDVHSQSSGYSRVWVKEVEDDDLPFRKRNKQGNTALHEAL---- 196

Query: 110 DAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169
                        +     +A +L   DP   + +N + KSPLYLA E+  +  +  +L+
Sbjct: 197 -------------INGHQWVALNLFGSDPQVVFYLNREGKSPLYLAAEAGYDSCVLAMLK 243

Query: 170 ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDH 229
               +++ + +L+GKSP+  A   ++ G+L +M  K P+++  +DE+  TP+H+AAS+ H
Sbjct: 244 VPVGSENPNTRLKGKSPIHAATRERQSGVLDIMLKKDPSMIYSRDEEGRTPLHYAASIGH 303

Query: 230 LEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQN 289
           L+GV +L        ++++  G +P H+AS  G V V+ E L   + P P EL ++ GQN
Sbjct: 304 LKGVHYLLGKYALGAVERDNSGFFPIHMASIKGHVDVIRELL--RHCPDPRELLSDNGQN 361

Query: 290 ILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRA 349
           ILHVAA  G+   V+ IL+  +L  KLINE D  GNTPLHLA ++ H  +   L  D R 
Sbjct: 362 ILHVAAINGKYEVVSCILKTPEL-GKLINEKDKVGNTPLHLATMHWHPMIVSALTGDERV 420

Query: 350 ESDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMMTLLVLLIVYIRDQLFQPGRTSFGNL 409
           +  ++N  G TA+D AE     + P                + +   ++    R +    
Sbjct: 421 DLKLLNNEGLTAFDAAEYYMETLAPYHKR------------LTWTALRVAGAPRATCPKP 468

Query: 410 LKLIDNLGRTS-NATPVNQKAMKDRINNLLVVAALIAGASFAASVQMSSSHSESQTNTTA 468
           LK I   G++S    P      +DR+N LL+VA L+A  SFAA   +   ++ S+ +   
Sbjct: 469 LKAI---GQSSVQVEPPKMDIYRDRVNTLLLVATLVATVSFAAGFTVPGGYNNSEPDQGM 525

Query: 469 SIIIRGAGAAPFALPCSNGHGGCDESQKKQRTWIKVFTVSNTIAMYTSITAAVLLCSLQL 528
           + ++R                      KK     +VF   + IAMY+SI  A+ L   QL
Sbjct: 526 ATMLR---------------------HKK----FQVFIFCDMIAMYSSIIVAISLIWAQL 560

Query: 529 LNTKLASLEFSFASLSTVIALYTSCIAFYASIHMSTYTGREFIVVMAAIQGWILLFRLPR 588
            + +L       A     ++L T  +AF A + +   +   ++     I G++ L  L  
Sbjct: 561 CDLRLVLTALRVALPLLGVSLATMSLAFMAGVSL-VVSNLNWLSNTVLITGFLFLIILVI 619

Query: 589 FIFPF---QGEKRYILFVYAF 606
             FP       + YIL   +F
Sbjct: 620 LFFPLCSPTSSRNYILRRISF 640

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127174|ref|XP_002329418.1| predicted protein [Populus trichocarpa] gi|222870468|gb|EEF07599.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 191/625 (30%), Positives = 304/625 (48%), Gaps = 79/625 (12%)

Query: 1   MSETFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAA 60
           +S    T  SPSGN+LLH++A+   ++     +   L + +P L+T +N   DT LH+AA
Sbjct: 69  LSSIIYTQVSPSGNSLLHVSASNGSKD-----VTELLLQHFPLLMTRKNFHKDTALHLAA 123

Query: 61  RDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKE 120
             G L+T  +L++ AK    +S  D    +EMKN RGN+ALH+A+               
Sbjct: 124 GAGQLRTITVLINKAKGHGEAS--DFSSFLEMKNDRGNSALHDAV--------------- 166

Query: 121 DGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESK-----NEDILEYILEALPVND 175
             +     +AR LVSE     Y  N + KSPLYLAVE+      ++ +   +L+A+P + 
Sbjct: 167 --INRHHEVARFLVSESSKLLYTQNNERKSPLYLAVENSIDKQSDDKMFTILLDAIPDDV 224

Query: 176 DCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRF 235
           D   KLEGKSPV  A++  K  +L+ +  ++P LL  +DE+   P+H AAS+ ++   +F
Sbjct: 225 DLLNKLEGKSPVHAAVQGSKRKILEQIAKEKPGLLRRKDEKGGNPLHCAASMGYVSETQF 284

Query: 236 LYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAA 295
           L++   D  +Q N+EG  P H+AS  G V V+  ++   N     E  N+K QNILHVAA
Sbjct: 285 LFDKYRDGAIQLNDEGNMPIHVASKKGHVCVVDAYI--SNWTEATEFLNSKRQNILHVAA 342

Query: 296 KKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIIN 355
           + GR + V +IL  + L + LINE D DGNTPLHLA+  G       L ++      I N
Sbjct: 343 ESGRHLVVKYILRNNKLKE-LINEQDLDGNTPLHLASKNGRSIATFTLVRNSMVMKRIAN 401

Query: 356 FYGQTAYDIAEQQYAKI---------IPEFSENDDDMMTLLVLLIVYIRD--------QL 398
               T YD+AE+Q +KI         IP   ++  D  +         +D        Q+
Sbjct: 402 GENLTPYDVAEKQ-SKIVGAEYSGEPIPNGKDDQVDQKSENYGPKPLTKDKSDHGVGNQV 460

Query: 399 FQPGRTS-------FGNLLKL-IDNLGRTSNATPVNQKAMKDR----------INNLLVV 440
            Q  ++        +G ++ L I +   + N + +    +K R          I+ LLVV
Sbjct: 461 DQDEKSGGKGKLDYYGVMMTLSILHFFASPNKSKIEYFRIKSRPLPKEEIKGRIDCLLVV 520

Query: 441 AALIAGASFAASVQMSSSHSESQTNTTASIIIRGAGAAPFALPCSNGHGGCDESQKKQRT 500
           A LIAG +FA  +Q+  S    ++  +              +   N           +  
Sbjct: 521 AVLIAGVTFAGILQLPRSADLPESGPSKITTTTTNSTQNQGISAQN-----------EGI 569

Query: 501 WIKVFTVSNTIAMYTSITAAVLLCSLQLLNTKLASLEFSFASLSTVIALYTSCIAFYASI 560
              V+   + +A+  ++ A+++LC  QL + K+A+     AS+ T  A+Y  C+AF  ++
Sbjct: 570 LRNVYIYFDMVALNAAVMASIILCWAQLYDVKVAAHAVWLASILTGGAIYLMCLAFVFAV 629

Query: 561 HMSTYTGREFIVVMAAIQGWILLFR 585
            ++      FIVV   + G + L +
Sbjct: 630 AINVGNSFAFIVVTLVVGGALFLVQ 654

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124528|ref|XP_002319354.1| predicted protein [Populus trichocarpa] gi|222857730|gb|EEE95277.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 144/383 (37%), Positives = 220/383 (57%), Gaps = 42/383 (10%)

Query: 6   KTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGM- 64
           + + +P GNTLLH+A +    N     +   L +++P LITM N++ DT LH+AAR+G  
Sbjct: 50  EKLVTPCGNTLLHLAVSYGSDN-----IIAYLVKEFPSLITMANNQNDTVLHLAAREGTA 104

Query: 65  LQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVT 124
           + T K LV+               LM M N + NT LH+A+                 + 
Sbjct: 105 IHTIKSLVELNPS-----------LMRMANGKRNTPLHDAV-----------------IK 136

Query: 125 SLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNED-ILEYILE---ALPVN-DDCDA 179
             + +A+ LV+ DP  +Y  N +  SPLYLAVE+ N++ IL+ +L+   ++P+  +D DA
Sbjct: 137 GNEEVAKFLVARDPEVAYYSNKNGSSPLYLAVENGNKNGILDDLLDLGASIPITREDGDA 196

Query: 180 KLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEI 239
             + KSPV  AIE + + LL+ +   +P LL + DE++   +H+A+S+  LEGVRFL + 
Sbjct: 197 LPKRKSPVHAAIEQRNIDLLEKIAKAKPELLCLTDEELGNSLHYASSICFLEGVRFLLKN 256

Query: 240 NPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGR 299
             +   + N EG YP H+A  N  V ++ EFL+    P+P E  N KGQNILHVAA+ G+
Sbjct: 257 FLNGAYKTNSEGNYPIHVACKNESVDLVKEFLDI--FPYPKEFLNKKGQNILHVAAENGQ 314

Query: 300 DVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYG 358
              V +ILE    + + L+NEMD+DGNTPLHLAA +G    A +L +D R ++ I+N   
Sbjct: 315 GNVVRYILEQYQKIVEPLLNEMDEDGNTPLHLAARHGQSTAAFVLVRDKRVKNSIVNNEN 374

Query: 359 QTAYDIAEQQYAKIIPEFSENDD 381
            T YD+A+QQ    + ++ + D+
Sbjct: 375 FTPYDVAKQQSKMAVDQYDKTDE 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446912|ref|XP_002266690.1| PREDICTED: uncharacterized protein LOC100256773 [Vitis vinifera]

 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 198/589 (33%), Positives = 286/589 (48%), Gaps = 92/589 (15%)

Query: 11  PSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKI 70
           P  NT LHIAA  S  +H+   +A  + R+ P LI  +NSKGDT LH+AAR   L   KI
Sbjct: 445 PRKNTCLHIAA--SFGHHD---LAKYIVRECPDLIKNKNSKGDTALHIAARKRNLSFVKI 499

Query: 71  LVDCAKRMTSSSQIDVK----FLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL 126
           ++D     + +SQ DV+     L+ + N  GNT LHEAL          N+ K++ V  +
Sbjct: 500 VMDSCPSGSGASQ-DVEKAEPLLLGIVNKEGNTVLHEAL---------INRCKQEEVVEI 549

Query: 127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEA-----LPVNDDCDAKL 181
                 L+  DP  ++  N + KSPL+LA E+    ++E I +      + +N D     
Sbjct: 550 ------LIKADPQVAHYPNKEGKSPLFLAAEAHYFHVVEAIGKPKVEKHMSINRD----R 599

Query: 182 EGKSPVKVAIELQKLGLLKMMHDKQPALLLI--QDEQMNTPMHWAASVDHLEGVRFLYEI 239
           E KS V  AI    LG  K M +K  AL ++  +DE   TP+H+AAS+ +LEGV+ L   
Sbjct: 600 EAKSAVHGAI----LGKNKEMLEKILALKIVHQRDEHGMTPLHYAASIGYLEGVQTLLAK 655

Query: 240 NPDSV--LQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKK 297
           +  +     +++EG  P H+AS  G V ++ E L+  +     EL +  G+NILHVAAK 
Sbjct: 656 DQSNFDRYHRDDEGFLPIHVASMRGYVDIVKELLQVSS--DSIELLSKHGENILHVAAKY 713

Query: 298 GRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFY 357
           G+D  V  +++   L + LINE D +GNTPLHLA  Y H  V   L  D R + +++N  
Sbjct: 714 GKDNVVDFLMKKKGL-ENLINEKDKEGNTPLHLATTYAHPKVVNYLTWDKRVDVNLVNNE 772

Query: 358 GQTAYDIAEQQYAKIIPEFSENDDDMMTLLVLLIVYIRDQLFQPGRTSFGNLLKLIDNLG 417
           GQTA+DIA            E+   +   L      I   L   G    GN  K+   L 
Sbjct: 773 GQTAFDIAVS---------VEHPTSLHQRL------IWTALKSTGTRPAGN-SKVPPKLP 816

Query: 418 RTSNATPVNQKAMKDRINNLLVVAALIAGASFAASVQMSSSHSESQTNTTASIIIRGAGA 477
           ++ N         KDR+N LL+V+ L+A  +FAA   M   ++ S  +         AG 
Sbjct: 817 KSPNT-----DQYKDRVNTLLLVSTLVATVTFAAGFTMPGGYNSSNPS---------AGM 862

Query: 478 APFALPCSNGHGGCDESQKKQRTWIKVFTVSNTIAMYTSITAAVLLCSLQLLNTKLASLE 537
           A F +                R    +F + NTIAMYTSI AA++    QL +  L    
Sbjct: 863 AIFLM----------------RNMFHMFVICNTIAMYTSILAAIIFIWAQLGDLNLMDTA 906

Query: 538 FSFASLSTVIALYTSCIAFYASIHMSTYTGREFIVVMAAIQGWILLFRL 586
           F FA     +ALY     F A + +   +   ++ ++  I G I LF L
Sbjct: 907 FRFALPLLGLALYAMSFGFMAGVSL-VVSNLHWLAIVVFIIGIICLFSL 954

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446312|ref|XP_002273435.1| PREDICTED: ankyrin repeat-containing protein At3g12360 [Vitis vinifera]

 Score =  229 bits (583), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 193/594 (32%), Positives = 284/594 (47%), Gaps = 91/594 (15%)

Query: 1   MSETFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAA 60
           +SE    + SP  NT LHIA   S  +HE   +A  +    P LI M NSKGDT LH+AA
Sbjct: 119 LSEILSQV-SPQNNTCLHIAV--SFGHHE---LAEYIVGLCPDLIKMTNSKGDTALHIAA 172

Query: 61  RDGMLQTAKILVDCAKRMTSSSQIDVK----FLMEMKNVRGNTALHEALNALQDAKKDKN 116
           R   L   K  +D     + +S+ DV+     L+ + N  GNT LHEAL          N
Sbjct: 173 RKKDLSFVKFGMDSCLSGSGASR-DVEQAEHSLLRIVNKEGNTVLHEAL---------IN 222

Query: 117 KPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYI-----LEAL 171
           + K++ V  +      L+  DP  +Y  N + KSPLYLA E+    ++E I      E +
Sbjct: 223 RCKQEEVVEI------LIKADPQVAYDPNKEGKSPLYLAAEAHYFHVVEAIGKSKVEEHM 276

Query: 172 PVNDDCDAK--LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDH 229
            +N D +AK  + G    K    L+K+  LK++H K        DEQ  TP+H+AAS+ +
Sbjct: 277 NINRDREAKPAVHGAILGKSKEMLEKILALKLVHQK--------DEQGRTPLHYAASIGY 328

Query: 230 LEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQN 289
           LEGV+ L + +     Q+++EG  P H+AS  G V ++ E L+  +     EL +  G+N
Sbjct: 329 LEGVQMLLDQSNFDRYQRDDEGFLPIHIASMRGYVDIVKELLQISS--DSIELLSKHGEN 386

Query: 290 ILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRA 349
           ILHVAAK G+D  V  +L+   + + LINE D  GNTPLHLA  + H  V   L  D R 
Sbjct: 387 ILHVAAKYGKDNVVDFVLKKKGV-ENLINEKDKGGNTPLHLATRHAHPKVVNYLTWDKRV 445

Query: 350 ESDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMMTLLVLLIVYIRDQLFQPGRTSFGNL 409
           + +++N  GQTA+DIA                    + V        +L      S+G  
Sbjct: 446 DVNLVNNEGQTAFDIA--------------------VSVEHPTSFHQRLVWTALKSYGAR 485

Query: 410 LKLIDNLGRTSNATPVNQKAMKDRINNLLVVAALIAGASFAASVQMSSSHSESQTNTTAS 469
                 +    + +P N    KDR+N LL+V+ L+A  +FAA   +   ++ S       
Sbjct: 486 PAGNSKVPPKPSKSP-NTDEYKDRVNTLLLVSTLVATVTFAAGFTIPGGYNSSDP----- 539

Query: 470 IIIRGAGAAPFALPCSNGHGGCDESQKKQRTWIKVFTVSNTIAMYTSITAAVLLCSLQLL 529
               GAG A F +                R    +F + NTIAMYT+I AA++L   QL 
Sbjct: 540 ----GAGLAIFLM----------------RNMFHMFVICNTIAMYTAILAAIILIWAQLG 579

Query: 530 NTKLASLEFSFASLSTVIALYTSCIAFYASIHMSTYTGREFIVVMAAIQGWILL 583
           +  L    F++A     +ALY   + F A + +   +   ++ ++  I G I L
Sbjct: 580 DLNLMDTAFTWALPFLGLALYAMSLGFMAGVSL-VISNLHWLAIVVFIIGTICL 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127170|ref|XP_002329417.1| predicted protein [Populus trichocarpa] gi|222870467|gb|EEF07598.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 185/600 (30%), Positives = 286/600 (47%), Gaps = 100/600 (16%)

Query: 8   ITSPSGNTLLHIAAA-GSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGML- 65
           + +PSGN+LLH+A + GS +      +A  LA ++P LIT +N + DT LHVAAR+G L 
Sbjct: 29  LVTPSGNSLLHVAVSYGSDK------IAAYLAEEFPSLITSRNDQEDTILHVAAREGRLS 82

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTS 125
            T K LV                L+ ++N +GN  LH+A+                 +  
Sbjct: 83  NTIKTLVGSNPS-----------LVRLENRKGNIPLHDAV-----------------IRG 114

Query: 126 LDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNED-ILEYILEALPVNDDCDAKLEGK 184
                  LV +DP A++  N   KSPLYLAVES +++ IL+ +L    +     A  +GK
Sbjct: 115 NKEAVAWLVCKDPGAAFYNNNTQKSPLYLAVESGHKNGILDDLLN---IEASSGALQKGK 171

Query: 185 SPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSV 244
           SPV  AIE +   +L+ +   +P LL  +DE +   +H+A+S+ +L+G RFL +  PD  
Sbjct: 172 SPVHAAIEQRNKDILEKIGKAKPELLGFKDEGLGNSLHYASSMGYLDGARFLLQKFPDGA 231

Query: 245 LQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVT 304
            ++++EG YP HLA  N  V ++ E ++    P+P E  N KGQNILHVAA+ G+   V 
Sbjct: 232 NERDQEGNYPIHLACKNDSVDLVKELMKV--FPYPKEFLNAKGQNILHVAAENGQGKVVR 289

Query: 305 HILEASD-LTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYD 363
           HIL+    L + L+N +D+DGNTPLHLA   G    A  L +D R E  I+N   +T YD
Sbjct: 290 HILKQDQKLIEPLLNGIDEDGNTPLHLATQSGQSNAAFALVRDTRVERSIVNNANKTPYD 349

Query: 364 IAEQQYAKIIPEFSENDDDMMTLLVLLIVYIRDQLFQPGRT------------------S 405
           IAE+Q    + ++ + D+        ++   R Q      T                   
Sbjct: 350 IAEEQSKIAVNQYEKTDE--------MLAEERKQFDSKNNTPADGTQDKAVDPKKQDKKK 401

Query: 406 FGNLLKLIDNLG----------------------RTSNATPVNQKAMKDRINNLLVVAAL 443
                KL+D  G                       +S   P  ++  K RI NLLVVA L
Sbjct: 402 PSKDYKLLDYYGAMTTLSILHFHARPKKSLQQPFSSSQGKPPRKEETKSRIENLLVVAVL 461

Query: 444 IAGASFAASVQMSSSHSESQTNTTASIIIRGAGAAPFALPCSNGHGGCDESQKKQRTWIK 503
           +AG +F+ ++Q+    + S +N              F +  +  H           + + 
Sbjct: 462 VAGVTFSGAIQLPQLKNISNSNEHHH---------DFNITSTVFHNNTAFDSPTGSSLLD 512

Query: 504 VFTVSNTIAMYTSITAAVLLCSLQLLNTKLASLEFSFASLSTVIALYTSCIAFYASIHMS 563
            +   +  A+ TS+ AA++L    L + K A     F+SL    A+Y  C+AF+ ++ ++
Sbjct: 513 GYLCLDVWALNTSVVAAIILLWTNLNDVKFAPFVVWFSSLMVGGAIYMMCLAFFFAVSIA 572

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106702|ref|XP_002333642.1| predicted protein [Populus trichocarpa] gi|222837930|gb|EEE76295.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 209/377 (55%), Gaps = 27/377 (7%)

Query: 1   MSETFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAA 60
           +S    T  SPSGN+LLH++A      H +  +   L + +P L+T +N   DT LH+AA
Sbjct: 69  LSSIIYTQVSPSGNSLLHVSA-----RHGSKDVTELLLQHFPLLMTRKNFHKDTALHLAA 123

Query: 61  RDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKE 120
             G L T   L++ AK    +S  D  + +EMKN RGNTALH+A+               
Sbjct: 124 GAGKLGTTTALINKAKGYLGAS--DFSYFLEMKNDRGNTALHDAV--------------- 166

Query: 121 DGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAK 180
             +   D LA  LVSE    +Y  N + KSPLYLAVE+ +E +L  +++A+P + D   K
Sbjct: 167 --LNRHDILAHFLVSESSKLAYTENNEHKSPLYLAVENSDEKMLTILMDAIPDDVDLLDK 224

Query: 181 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEIN 240
           LEGKSPV  A++ +K  +L+ +  ++P LL  +DE+   P H AA + ++ G +FL++  
Sbjct: 225 LEGKSPVHAAVQGRKRKILEQIAKEKPGLLRRKDEKGGNPFHCAAYMGYVWGTQFLFDKY 284

Query: 241 PDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRD 300
            D  +Q+N+EG  P H+AS    V V+  ++   N     E  N+K QN+LHVAA+ GR 
Sbjct: 285 RDGAIQQNDEGNMPIHVASKKDHVDVVDAYI--SNWTDATEFLNSKRQNVLHVAAESGRH 342

Query: 301 VSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQT 360
           + V +IL  + L + LINE D DGNTPLHLA+  G       L ++      I N    T
Sbjct: 343 LVVKYILRNNKLKE-LINEQDLDGNTPLHLASKNGRSIATFTLVRNSMVMKRIANGENLT 401

Query: 361 AYDIAEQQYAKIIPEFS 377
            YD+AE+Q   +  E+S
Sbjct: 402 PYDVAEKQSKIVGAEYS 418

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	626
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.490	0.453	0.318	2.5e-31
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.531	0.582	0.319	1.2e-30
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.600	0.586	0.316	5.8e-28
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.568	0.531	0.297	4.3e-26
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.519	0.475	0.319	1.2e-25
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.535	0.482	0.284	2.3e-24
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.503	0.511	0.269	1.4e-23
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.442	0.520	0.269	1.6e-14
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.432	0.409	0.275	3.9e-14
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.420	0.484	0.280	9.1e-14

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.5e-31, Sum P(3) = 2.5e-31
 Identities = 106/333 (31%), Positives = 166/333 (49%)

Query:    41 YPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTA 100
             YP L+   NS G+  LHVAA  G L   + LV   K ++ +     K +   K+   + A
Sbjct:   154 YPGLLMKSNSMGEVALHVAAGAGHLAVVEALVSFIKDISCNKPGVAKKIYFAKDRHQDNA 213

Query:   101 LHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKN 160
             LH +L         K K  +        +A  LV  + + S++ N D  SPLYLAVE+  
Sbjct:   214 LHVSL---------KRKHLK--------VASCLVCAEQSLSFVANNDGVSPLYLAVEAGQ 256

Query:   161 EDILEYILE----ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQ 216
              D+ + + +             +K+ G+S V  A++ ++  +L  +  +  +L+  +DE 
Sbjct:   257 ADLAKTMWQHSNNGSSSTSTLASKIGGRSIVHGAMKARRKDILVAILSEDASLINFRDEG 316

Query:   217 MNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENM 276
               T + + AS+ + EG  +L +   DSV   +++G +P H+A   G V ++   L++   
Sbjct:   317 -RTCLSFGASLGYYEGFCYLLDKALDSVYVSDDDGSFPIHMAVKYGYVKILKAILKR--C 373

Query:   277 PHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLT-DKLINEMDDDGNTPLHLAALY 334
             P   EL + + QN+LHVAAK G+   +  IL    D   +KLINE D +GNTPLHLA   
Sbjct:   374 PDALELLDRENQNVLHVAAKNGKIEVLKFILRCCKDKNKEKLINEEDANGNTPLHLATKN 433

Query:   335 GHYFVAVILGKDGRAESDIINFYGQTAYDIAEQ 367
              H  V  +L  D R +   +N  G TA DIAE+
Sbjct:   434 WHPKVVSMLTWDNRVDLKTLNHDGVTALDIAEK 466

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 1.2e-30, P = 1.2e-30
 Identities = 118/369 (31%), Positives = 189/369 (51%)

Query:     8 ITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQT 67
             + S  G+++LH+AA        ++ +   +  + P L+   N K   PLHVAA  G    
Sbjct:   110 LKSDRGDSVLHLAARWG-----HLELVKNIISECPCLVLELNFKDQLPLHVAAHAGHSAI 164

Query:    68 AKILVDCAKRMTSS-SQIDVKFLME--MKNVRGNTALHEALNALQDAKKDKNKPKEDGVT 124
              + LV      +   ++ D + L    +++  GNTALH A+         + +  E    
Sbjct:   165 VEALVASVTFFSDRLAEEDRERLNPYVLRDKYGNTALHLAI---------EGRYME---- 211

Query:   125 SLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVND------DCD 178
                 +A SLV+E+ NAS+L N +  S LY+AVE+ +  +++ IL+    ND      + D
Sbjct:   212 ----MAASLVNENQNASFLENNEGISSLYMAVEAGDVTLVKEILKTAGNNDLEGRNSNLD 267

Query:   179 AKLEG-KSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY 237
             +KLEG K  V VA+  + +G+L ++ ++ P+L   +DE+  T + +AAS+   +GV  L 
Sbjct:   268 SKLEGRKHLVHVALNARSIGVLDVILNEYPSLEDERDEEGRTCLSFAASIGFYKGVCNLL 327

Query:   238 EINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKK 297
             + +  +V   +E+G +P H A+ NG + ++ E L++   PH   + N  GQN+LH+AAK 
Sbjct:   328 DRSTKNVYVCDEDGSFPIHTAAENGHIRIVKEILKR--CPHSKHMLNKLGQNVLHIAAKI 385

Query:   298 GRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFY 357
             G    V  ++ + D T  L    D DGNTPLHLA L   Y     L  D +    + N  
Sbjct:   386 GEHNLVKSLMRSDD-TKHLGVGQDVDGNTPLHLAVLNWRYRSIRTLASDVKI-LQLRNDN 443

Query:   358 GQTAYDIAE 366
             G TA  IAE
Sbjct:   444 GLTARGIAE 452

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.8e-28, Sum P(2) = 5.8e-28
 Identities = 132/417 (31%), Positives = 196/417 (47%)

Query:    31 MAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMT---SSSQIDVK 87
             + +   +  + P L+   NSK   PLH AA  G L   +  V     ++   S  + +  
Sbjct:    84 LELVKRIVSECPCLLLETNSKDQIPLHAAAAAGRLAVVEAFVARVNEISDGLSEEERERV 143

Query:    88 FLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVD 147
              L  MK++ GNTALH AL                G   L + A  LV  +  AS+L N  
Sbjct:   144 NLYAMKDIDGNTALHLALKG--------------G--HLKTAA-CLVKANHLASFLANNH 186

Query:   148 CKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEG-KSPVKVAIELQKLGLLKMMHDKQ 206
               SPL+ A+ + +  ++E ++       +  +KLEG KS V  A++ +   +L ++  + 
Sbjct:   187 GVSPLFTAIIAGSLTLVEAMMYVPGQTCNLASKLEGRKSLVHAALKAKNSDILDVILSED 246

Query:   207 PALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPV 266
             P+L+  +DE+  T +  AA V + +GV  L   +  +V + +++G YP H+A   G V +
Sbjct:   247 PSLVNERDEEGRTCLSVAAYVGYYKGVVNLLHRSTSNVFECDDDGSYPIHMAVEKGRVKI 306

Query:   267 MGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVS-VTHILEASDLT-DKLINEMDDDG 324
               + L+    P    L N +GQNILH+AAK G+  + +  +++A DL  + LI E D DG
Sbjct:   307 FLKLLKC--CPDSQYLLNKQGQNILHIAAKSGKTGTYLLQVIKAYDLIKNDLIMEQDVDG 364

Query:   325 NTPLHLAALYGHYFVAVILGKDGRAES-DIINFYGQTAYDIAEQQYAKIIPEFSENDDDM 383
             NTPLHLA L        IL K        I N  G +A DIAE         F E     
Sbjct:   365 NTPLHLATLTWRPRTVNILNKFTLGNHLHIRNKDGLSALDIAESNLQSNYV-FRER---- 419

Query:   384 MTLLVLLIVYIRDQLFQPGRTSFGNLLKLIDNLGRTSNATPVNQKAMKDRINNLLVV 440
             MTL+VLL      + F+   TS G  LK        S +  V     KD IN LL+V
Sbjct:   420 MTLMVLLCT-CSPRGFKMIPTS-GITLK--------SRSEKVAGNKYKDSINVLLLV 466

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.3e-26, P = 4.3e-26
 Identities = 118/397 (29%), Positives = 193/397 (48%)

Query:     8 ITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQT 67
             + S +G+++LHIAA      H  + +   +  + P L+  QNS   TPLHVA   G  + 
Sbjct:    96 VKSNTGDSILHIAAKWG---H--LELVKEIIFECPCLLFEQNSSRQTPLHVATHGGHTKV 150

Query:    68 AKILV-DCAKRMTSSSQIDVKFLME--MKNVRGNTALHEALNALQDAKKDKNKPKEDGVT 124
              + LV      + S S  + + L    +K+  GNTAL+ A+               +G  
Sbjct:   151 VEALVASVTSALASLSTEESEGLNPHVLKDEDGNTALYYAI---------------EG-R 194

Query:   125 SLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKN--EDILEYILEALPVNDD------ 176
              L+ +A  LV+ D +A +L N    S LY AV++ N  ED+++ IL+    N D      
Sbjct:   195 YLE-MATCLVNADKDAPFLGNNKGISSLYEAVDAGNKFEDLVKAILKTTDDNVDREVRKF 253

Query:   177 -CDAKLEG-KSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVR 234
               D+KL+G K    VA++ + +G+L ++ D+ P+L+  QDE   T + + AS+ + +G+ 
Sbjct:   254 NLDSKLQGNKHLAHVALKAKSIGVLDVILDEYPSLMDEQDEDGRTCLSYGASIGYYKGLC 313

Query:   235 FLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVA 294
              +   +   V   +++G +P H A+ N    ++ EF+++   P    L N  GQNILHVA
Sbjct:   314 NILNRSTKGVYVCDQDGSFPIHSAAKNEHYEIIKEFIKR--CPASKYLLNRLGQNILHVA 371

Query:   295 AKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDII 354
             AK    ++   ++   D T  L    D DGNTPLHLA +   +     L         + 
Sbjct:   372 AKNEASLTAYMLMHDKD-TKHLGVGQDVDGNTPLHLAVMNWDFDSITCLASRNHEILKLR 430

Query:   355 NFYGQTAYDIAEQQYAKIIPEFSENDDDMMTLLVLLI 391
             N  G  A DIAE +   + P +  ++   + LL+  I
Sbjct:   431 NKSGLRARDIAESE---VKPNYIFHERWTLALLLYAI 464

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
 Identities = 114/357 (31%), Positives = 178/357 (49%)

Query:    44 LITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHE 103
             L+   NSK   PLHVAAR G L   + LV       S +    +   E + +  N  L +
Sbjct:   145 LLMESNSKDQLPLHVAARMGHLAVVEDLV------ASVTFFSARLAEEDREIL-NPYLLK 197

Query:   104 ALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDI 163
              +N   D     N   +   T +   A  LV+ +  AS+L   D  SPLYLAVE+K+  +
Sbjct:   198 DING--DTAL--NLALKGHYTEV---ALCLVNANRQASFLACKDGISPLYLAVEAKDASL 250

Query:   164 LEYILEALPVNDDCDAK---LEGKSPVK-VAIELQKLGLLKMMHDKQPALLLIQDEQMNT 219
             ++ +L     ND    K   LEG+  +   A+      +L ++ ++ P+L+  +DE+  T
Sbjct:   251 VKAMLG----NDGPQRKNLNLEGRKYLAHAALNSLSTDILDVILNEYPSLVDERDEEGRT 306

Query:   220 PMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHP 279
              + + AS+ + +GV  L   +   V   +++G YP HLA   G + V+ E  ++   P+ 
Sbjct:   307 CLSFGASIGYHKGVCNLLNRSRKGVFVCDDDGSYPIHLAVEKGRIKVVKEICKR--CPYS 364

Query:   280 NELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFV 339
               L N KGQN+LH+AA+ G+   + H L A +  + L NE D DGNTPLHLA +Y     
Sbjct:   365 KLLLNKKGQNLLHIAAESGKFRILRH-LTAHEQINHLANEKDVDGNTPLHLATIYWRPRA 423

Query:   340 AVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMMTLLVLLIVYIRD 396
                LG  G+    I N  G  A DIAE   +K+ P +   +   +TLL L+ ++ ++
Sbjct:   424 VRELG--GKKNLLIQNNNGLVALDIAE---SKLQPHYIFRE--RLTLLALVQLHFQN 473

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 2.3e-24, P = 2.3e-24
 Identities = 106/372 (28%), Positives = 187/372 (50%)

Query:     8 ITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDG---M 64
             I S +G+++LH+A         ++ +   +  + P L+  QNS G TPLHVAA  G   +
Sbjct:   127 IKSNTGDSILHLAVTWG-----HLELVKEIVCECPRLLLEQNSSGQTPLHVAAHSGHTTI 181

Query:    65 LQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVT 124
             ++    LV  +     + + +      +K+  GNTAL+ A+               +G  
Sbjct:   182 VEAFVALVTFSSARLCNEESERMNPYVLKDKDGNTALYYAI---------------EG-- 224

Query:   125 SLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVND------DCD 178
                 +A  LV+ + +A +L N    S L++A+ + +  +++ IL+ +   D      + +
Sbjct:   225 RYFEMAVCLVNANQDAPFLGNKYGVSSLFVAINTGDVSLVKAILKIIGNKDLKGKKSNLE 284

Query:   179 AKLEG-KSPVKVAIELQKL-GLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFL 236
             +KL+G KS   VA+  Q + G+L ++ D+ P+L+  +D    T +  AA + + EGV  L
Sbjct:   285 SKLQGQKSLAHVALVTQSIAGVLDVILDEYPSLMDERDINGWTCLSLAAHIGYYEGVCNL 344

Query:   237 YEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAK 296
              E +   V   +++G +P H A+  G   ++ EF+++   P    L N  GQN+LH+AAK
Sbjct:   345 LERSTKGVYVCDQDGSFPIHTAAEKGHENIVEEFIKR--CPGSKHLLNKLGQNVLHIAAK 402

Query:   297 KGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINF 356
              G+   ++++L  +  T+ L    D DGNTPLHLA +  H+     L +  +    + N 
Sbjct:   403 NGK-FWISNMLIINKDTEHLGVGQDVDGNTPLHLAVMNWHFKSITWLARSSKILK-VRNK 460

Query:   357 YGQTAYDIAEQQ 368
              G  A DIAE++
Sbjct:   461 NGLRARDIAERE 472

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
 Identities = 90/334 (26%), Positives = 170/334 (50%)

Query:    49 NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNAL 108
             +++G++ LH+AA  G +   + ++     +  +  +  +  + +    G+  + E L   
Sbjct:    69 DNQGNSILHIAAALGHVHIVEFIISTFPNLLQNVNLMGETTLHVAARAGSLNIVEILVRF 128

Query:   109 --QDAKKDK--NKPKEDGVTSLDS--------LARSLVSEDPNASYLMNVDCKSPLYLAV 156
               + +  D       ++G T+L +        +A  LVS   + S+  N D  SPLY+AV
Sbjct:   129 ITESSSYDAFIAAKSKNGDTALHAALKGKHVEVAFCLVSVKHDVSFDKNNDEASPLYMAV 188

Query:   157 ESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQ 216
             E+   +++  +LE+        +   GKS +  A++  +  +L ++  + P L+ +++E+
Sbjct:   189 EAGYHELVLKMLESSSSPSILASMFSGKSVIHAAMKANRRDILGIVLRQDPGLIELRNEE 248

Query:   217 MNTPMHWAASVDHLEGVRFL---YEINPDSVLQ-KNEEGLYPFHLASANGCVPVMGEFLE 272
               T + + AS+   EG+R++   ++    S+    +++G  P H+A+  G V ++ EFL+
Sbjct:   249 GRTCLSYGASMGCYEGIRYILAEFDKAASSLCYVADDDGFTPIHMAAKEGHVRIIKEFLK 308

Query:   273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
               + P   EL NN+ QNI HVAA  G+   V ++L+  D   +++NE D +GNTPLHLA 
Sbjct:   309 --HCPDSRELLNNQCQNIFHVAAIAGKSKVVKYLLKL-DEGKRMMNEQDINGNTPLHLAT 365

Query:   333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIAE 366
              + +  V  +L  +       +N  G TA DIAE
Sbjct:   366 KHRYPIVVNMLTWNDGINLRALNNEGFTALDIAE 399

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
 Identities = 80/297 (26%), Positives = 141/297 (47%)

Query:    90 MEMKNVRGNTALHEAL-NALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNV-- 146
             MEMK ++  T  H+A  ++++     + +   D +T  + +  S  S     + LM+V  
Sbjct:     1 MEMKQMKFLT--HQAFFSSVRSGDLSQLQQLVDNLTGDELIDES--SPCSAVAELMSVQN 56

Query:   147 DC-KSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVK---VAIELQKLGLLKMM 202
             D  ++ +Y++     EDI  Y++    +      K+  KS +    VA +   LG++K +
Sbjct:    57 DAGETAVYISAAENLEDIFRYLIRFSSLET---VKIRSKSDMNAFHVAAKRGHLGIVKEL 113

Query:   203 HDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG 262
                 P L  I D    +P++ AA  DHLE V  + +++P   +   + G    H A   G
Sbjct:   114 LRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYG 173

Query:   263 CVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDD 322
              + ++   +EK+      +  + KGQ  LH+A K GR + V   +  +D T  ++NE D 
Sbjct:   174 LLRIVKALIEKDAAIVGVK--DKKGQTALHMAVK-GRSLEVVEEILQADYT--ILNERDR 228

Query:   323 DGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQ-QYAKIIPEFSE 378
              GNT LH+A       +  +L      E + IN   +TA D+A++ QY++   E +E
Sbjct:   229 KGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINE 285

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 3.9e-14, P = 3.9e-14
 Identities = 81/294 (27%), Positives = 138/294 (46%)

Query:    88 FLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLAR----SLVSE------D 137
             FL + K+ R    +   L+ + + +K    P + G +SL   AR    S V E      D
Sbjct:   119 FLEKQKSFR--VVMERQLSFIGERRKKNESPGKRGDSSLHIAARTGNLSKVKELIRGCGD 176

Query:   138 PNASYL--MNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQK 195
                  L   N++ ++PLY A E+ +  ++E +L+ + +     A   G  P  VA +   
Sbjct:   177 ELKELLSKQNLEGETPLYTAAENGHSIVVEEMLKHMDLETASIAARNGFDPFHVAAKQGH 236

Query:   196 LGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD-SVLQKNEEGLYP 254
             L +LK++ +  P L +  D    T +H AA+  H++ V  L E + + + + KN  G   
Sbjct:   237 LEVLKILLETFPNLAMTTDLSCTTALHTAATQGHIDVVNLLLETDSNLAKIAKNN-GKTA 295

Query:   255 FHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTD 314
              H A+  G V V+   + K+  P      + KGQ  LH+A K   D  V  +++  D+  
Sbjct:   296 LHSAARMGHVEVVKSLIGKD--PSIGFRTDKKGQTALHMAVKGQNDGIVVELVKP-DVA- 351

Query:   315 KLINEMDDDGNTPLHLAALYGHY-FVAVILGKDGRAESDIINFYGQTAYDIAEQ 367
              +++  D+ GNTPLH+A   G    V  ++  +G    + IN  G T  D++E+
Sbjct:   352 -VLSVEDNKGNTPLHIATNKGRIKIVRCLVSFEG-INLNPINKAGDTPLDVSEK 403

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
 Identities = 79/282 (28%), Positives = 125/282 (44%)

Query:    87 KFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNV 146
             K + ++   R +T LH A+       +  NK   D V  +  L ++  SE        N 
Sbjct:    17 KMMKQLTGKRDDTLLHSAV-------RHGNK---DRVVEI--LTKTRESELNQLLGKQNQ 64

Query:   147 DCKSPLYLAVESKNEDILEYILEALPVN-DDCDAKLEGKSPVKVAIELQKLGLLKMMHDK 205
               ++ LY+A E  + +I++ ++    +   +  A+  G     +A +   L +LK++ + 
Sbjct:    65 SGETALYVAAEYGDVEIVKEMINCYDLALVEIKAR-NGFDAFHIAAKQGDLDVLKVLAEA 123

Query:   206 QPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVP 265
                L +  D    T +H AA+  H E V FL E+           G    H AS NG V 
Sbjct:   124 HSELAMTVDLSNTTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTALHSASRNGHVK 183

Query:   266 VMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGN 325
             V+   L  E  P      + KGQ  LH+A K G +V V   L  +D +   IN  D  GN
Sbjct:   184 VIKALLASE--PAIAIRMDKKGQTALHMAVK-GTNVEVVEELIKADRSS--INIADTKGN 238

Query:   326 TPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQ 367
             T LH+AA  G   +  +L  +   ++  +N  G+TA D AE+
Sbjct:   239 TALHIAARKGRSQIVKLLLANNMTDTKAVNRSGETALDTAEK 280

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	626
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-12
pfam13962	114	pfam13962, PGG, Domain of unknown function	1e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-05
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	3e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.001

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 89.0 bits (221), Expect = 4e-21
 Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 8/132 (6%)

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
            +DE   TP+H AAS  HLE V+ L E   D V  K+ +G  P HLA+ NG + ++   L
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 272 EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLA 331
           EK    +     +  G   LH+AA+ G    V  +L+        +N  D DG TPLHLA
Sbjct: 61  EKGADVN---ARDKDGNTPLHLAARNGNLDVVKLLLKHGAD----VNARDKDGRTPLHLA 113

Query: 332 ALYGHYFVAVIL 343
           A  GH  V  +L
Sbjct: 114 AKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 33/125 (26%), Positives = 74/125 (59%), Gaps = 8/125 (6%)

Query: 145 NVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHD 204
           + D ++PL+LA  + + ++++ +LE     +  D   +G++P+ +A +   L ++K++ +
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN--DGRTPLHLAAKNGHLEIVKLLLE 61

Query: 205 KQPALLLIQDEQMNTPMHWAASVDHLEGVRFL--YEINPDSVLQKNEEGLYPFHLASANG 262
           K  A +  +D+  NTP+H AA   +L+ V+ L  +  + ++   ++++G  P HLA+ NG
Sbjct: 62  K-GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA---RDKDGRTPLHLAAKNG 117

Query: 263 CVPVM 267
            + V+
Sbjct: 118 HLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 31/141 (21%), Positives = 47/141 (33%), Gaps = 33/141 (23%)

Query: 427 QKAMKDRINNLLVVAALIAGASFAASVQM-----SSSHSESQTNTTASIIIRGAGAAPFA 481
            + ++   N+LLVVA LIA  +FAA                            AG    A
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHH------------AGTPILA 48

Query: 482 LPCSNGHGGCDESQKKQRTWIKVFTVSNTIAMYTSITAAVLLCSLQLLNTKLASLEFSFA 541
                           +    K F VSNTIA   S+ A +LL  +    ++         
Sbjct: 49  ---------------GKPRRFKAFFVSNTIAFVASLVAVILLLYIVPSFSR-RLPRLLAL 92

Query: 542 SLSTVIALYTSCIAFYASIHM 562
                ++L +  +AF A  + 
Sbjct: 93  LTLLWLSLLSLMVAFAAGSYR 113

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 59.7 bits (145), Expect = 7e-11
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 15/105 (14%)

Query: 284 NNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
           +  G+  LH+AA  G    V  +LE        +N  D+DG TPLHLAA  GH  +  +L
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGAD----VNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 344 GKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMMTLLV 388
            + G A+ +  +  G T   +A              + D++ LL+
Sbjct: 60  LEKG-ADVNARDKDGNTPLHLA----------ARNGNLDVVKLLL 93

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 52/169 (30%)

Query: 8   ITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQT 67
                G T LH+AA+     H  +     L  +    +  +++ G TPLH+AA++G L+ 
Sbjct: 2   ARDEDGRTPLHLAAS---NGHLEVVK---LLLENGADVNAKDNDGRTPLHLAAKNGHLEI 55

Query: 68  AKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA--------LNALQDAKKDKNKPK 119
            K+L++           DV      ++  GNT LH A        +  L     D N   
Sbjct: 56  VKLLLE--------KGADV----NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD 103

Query: 120 EDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYIL 168
           +DG T                          PL+LA ++ + ++++ +L
Sbjct: 104 KDGRT--------------------------PLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 21/145 (14%)

Query: 92  MKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSP 151
            ++  G T LH A      A     +           + + L+    +     + D ++P
Sbjct: 2   ARDEDGRTPLHLA------ASNGHLE-----------VVKLLLENGADV-NAKDNDGRTP 43

Query: 152 LYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLL 211
           L+LA ++ + +I++ +LE     +  D   +G +P+ +A     L ++K++  K  A + 
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGADVNARDK--DGNTPLHLAARNGNLDVVKLL-LKHGADVN 100

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFL 236
            +D+   TP+H AA   HLE V+ L
Sbjct: 101 ARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 5/91 (5%)

Query: 152 LYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLL 211
           L+LA ++ N ++++ +LE      D +   +  + + +A     L ++K++ +   A + 
Sbjct: 1   LHLAAKNGNLELVKLLLEK---GADVNLG-DTDTALHLAARNGNLEIVKLLLEHG-ADVN 55

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPD 242
            +D+  NT +H AA   +LE V+ L E   D
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 222 HWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNE 281
           H AA   +LE V+ L E   D  L   +      HLA+ NG + ++   LE         
Sbjct: 2   HLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLLEHGA---DVN 55

Query: 282 LFNNKGQNILHVAAKKGR 299
             +  G   LH+AA+ G 
Sbjct: 56  AKDKDGNTALHLAARNGN 73

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 255 FHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTD 314
            HLA+ NG + ++   LEK    +      +     LH+AA+ G    V  +LE      
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVN----LGDTD-TALHLAARNGNLEIVKLLLEH----G 51

Query: 315 KLINEMDDDGNTPLHLAALYGHY 337
             +N  D DGNT LHLAA  G+ 
Sbjct: 52  ADVNAKDKDGNTALHLAARNGNL 74

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.1 bits (111), Expect = 9e-06
 Identities = 46/177 (25%), Positives = 66/177 (37%), Gaps = 12/177 (6%)

Query: 167 ILEALPVNDDCDAKLEGKSPVKVAIELQKLGLL--KMMHDKQPALLLIQDEQMNTPMHWA 224
           +   L ++ D     + K  + + + L     L   ++       L  +D     P+H A
Sbjct: 21  VALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSA 80

Query: 225 ASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG-----CVPVMGEFLEKENMPHP 279
           AS    + V+ L     D V  K+ +G  P HLA+ NG      + V    LE       
Sbjct: 81  ASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV 139

Query: 280 NELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGH 336
           N L +  G   LH AA  G    V  +LEA        N  +  G T L  AA  G 
Sbjct: 140 NNLRDEDGNTPLHWAALNGDADIVELLLEAG----ADPNSRNSYGVTALDPAAKNGR 192

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 189 VAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKN 248
           +A +   L L+K++ +K   + L      +T +H AA   +LE V+ L E   D V  K+
Sbjct: 3   LAAKNGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHGAD-VNAKD 58

Query: 249 EEGLYPFHLASANGCVPVMGEFLEKE 274
           ++G    HLA+ NG + ++   LE  
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 318 NEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
           N  D+DG TPLHLAA  GH  V  +L ++G A+ +  +  G+T   +A
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGRTPLHLA 47

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
           I+D ++ T +H+A     LE ++ L+E   D V  +++ G YP H+A  +    ++   L
Sbjct: 119 IKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLL 177

Query: 272 EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLA 331
           EK    +     +N G++ LH AA+ G    +  ++   D  + ++N+  + G TPLH A
Sbjct: 178 EKGAYANVK---DNNGESPLHNAAEYGDYACIKLLI---DHGNHIMNKCKN-GFTPLHNA 230

Query: 332 ALYGHYFVAVILGKDGRAESDI 353
            ++    + +++      + DI
Sbjct: 231 IIHNRSAIELLINNASINDQDI 252

Length = 434

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 30/115 (26%)

Query: 283 FNNKGQNILHVAAKKGRDVSVTHILEASDLTDKL---------INEMDD-DGNTPLHLAA 332
           +N  G+  +H+ +   +          +D  +KL         IN  +   GNTPLH+A 
Sbjct: 51  YNRHGKQCVHIVSNPDK----------ADPQEKLKLLMEWGADINGKERVFGNTPLHIAV 100

Query: 333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMMTLL 387
              +Y +A  L        +I+N+  +T Y +A             +D  MM +L
Sbjct: 101 YTQNYELATWLCNQPGVNMEILNYAFKTPYYVA----------CERHDAKMMNIL 145

Length = 154

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 289 NILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHY 337
             LH AA  GR   V ++LE        IN  D+DGNT LH+AA  G+ 
Sbjct: 3   TALHKAAISGRLELVKYLLE----KGVDINRTDEDGNTALHIAAENGNL 47

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 202 MHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLA 258
           + +  P  L   D   NTP+H AA    LE V++L +   D +  ++ +GL    LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVD-LNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 12/134 (8%)

Query: 150 SPLYLAVESKNEDILEYILEALPVNDDCDAKLE--------GKSPVKVAIELQKLGLLKM 201
            PL+ A    ++ I++ +L +    +  DA  +          +P +  IE+ KL LL+ 
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKL-LLE- 132

Query: 202 MHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASAN 261
                  +  ++DE  NTP+HWAA     + V  L E   D    +N  G+     A+ N
Sbjct: 133 -AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKN 190

Query: 262 GCVPVMGEFLEKEN 275
           G + ++   L+K  
Sbjct: 191 GRIELVKLLLDKGL 204

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 321 DDDGNTPLHLAALYGHY-FVAVILGKDGRAESDIINFYGQTAYDIA 365
           D +GNTPLHLAA YG    V  +L      + ++ +  G TA D+A
Sbjct: 13  DGNGNTPLHLAAKYGALELVQWLLKP--GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 217 MNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG 262
             T +H AA    LE V++L E     + + +E+G    H+A+ NG
Sbjct: 1   GRTALHKAAISGRLELVKYLLE-KGVDINRTDEDGNTALHIAAENG 45

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	626
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02792	631	ankyrin-like protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.95
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.92
PF13962	113	PGG: Domain of unknown function	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
PHA02795	437	ankyrin-like protein; Provisional	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.88
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
PHA02743	166	Viral ankyrin protein; Provisional	99.8
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.8
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.8
PHA02741	169	hypothetical protein; Provisional	99.78
PHA02741	169	hypothetical protein; Provisional	99.78
PHA02736	154	Viral ankyrin protein; Provisional	99.76
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.75
PHA02736	154	Viral ankyrin protein; Provisional	99.74
PHA02743	166	Viral ankyrin protein; Provisional	99.74
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.73
PHA02884	300	ankyrin repeat protein; Provisional	99.72
PHA02884	300	ankyrin repeat protein; Provisional	99.72
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.67
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.62
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.61
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.6
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.57
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.57
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.49
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.42
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.42
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.31
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.31
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.3
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.25
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.24
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.22
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.19
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.14
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.09
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.08
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.07
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.05
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.63
PF13606	30	Ank_3: Ankyrin repeat	98.59
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.57
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.51
PF13606	30	Ank_3: Ankyrin repeat	98.48
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.46
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.42
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.31
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.29
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.21
KOG0522	560	consensus Ankyrin repeat protein [General function	98.17
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.17
KOG0522	560	consensus Ankyrin repeat protein [General function	98.13
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.12
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.1
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.08
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.89
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.87
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.81
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.65
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.56
KOG2384	223	consensus Major histocompatibility complex protein	97.36
KOG2384	223	consensus Major histocompatibility complex protein	97.32
KOG0511	516	consensus Ankyrin repeat protein [General function	97.29
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.22
KOG0511	516	consensus Ankyrin repeat protein [General function	97.2
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.38
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.81
KOG2505	591	consensus Ankyrin repeat protein [General function	95.39
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.91
KOG2505	591	consensus Ankyrin repeat protein [General function	92.73
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	88.84
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	88.61
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	83.87
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	83.43

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.2e-43  Score=366.22  Aligned_cols=317  Identities=26%  Similarity=0.337  Sum_probs=285.7

Q ss_pred             ccccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccch
Q 039828            5 FKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQI   84 (626)
Q Consensus         5 ~~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   84 (626)
                      +....|..|+||||+|++...   .+  .+++|++.+.+ .+..|.++.+|||+|+..|+.++.+.|+++++++      
T Consensus        80 ~~~a~D~~~n~~l~~a~~~~~---~~--~i~~Lls~gad-~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dv------  147 (929)
T KOG0510|consen   80 ISYAKDSADNTPLHAAVEYNQ---GD--KIQVLLSYGAD-TPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADV------  147 (929)
T ss_pred             hhhhhhcccCchhHHHhhcch---HH--HHHHHHhcCCC-CChhhhhccCchhhccccchHHHHHHHHHhcCCc------
Confidence            345678999999999999999   88  99999999886 8889999999999999999999999999999866      


Q ss_pred             hhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHH
Q 039828           85 DVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDIL  164 (626)
Q Consensus        85 ~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  164 (626)
                            +..|..|.||||.|+.       .++          .|..+.|++.++++. ..|.+|.+|+|.|+.+|..++.
T Consensus       148 ------nl~de~~~TpLh~A~~-------~~~----------~E~~k~Li~~~a~~~-K~~~~~~~~iH~aa~s~s~e~m  203 (929)
T KOG0510|consen  148 ------NLEDENGFTPLHLAAR-------KNK----------VEAKKELINKGADPC-KSDIDGNFPIHEAARSGSKECM  203 (929)
T ss_pred             ------cccccCCCchhhHHHh-------cCh----------HHHHHHHHhcCCCCC-cccCcCCchHHHHHHhcchhhh
Confidence                  4689999999999999       888          888899999999997 8899999999999999999999


Q ss_pred             HHHHHhCC---CCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCcc--------------ccccCCCCCchhhHHhhC
Q 039828          165 EYILEALP---VNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPAL--------------LLIQDEQMNTPMHWAASV  227 (626)
Q Consensus       165 ~~Ll~~~~---~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--------------~~~~d~~g~tpLh~Aa~~  227 (626)
                      +.++.+.+   ....+..+..+.+|||.|+..|+.++++.+|+.+...              ++..|.+|.||||+|++.
T Consensus       204 Ei~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~  283 (929)
T KOG0510|consen  204 EIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQ  283 (929)
T ss_pred             hhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHc
Confidence            99998322   2244556678999999999999999999999987433              445689999999999999


Q ss_pred             CCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHH
Q 039828          228 DHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL  307 (626)
Q Consensus       228 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll  307 (626)
                      |+.++++.|+..|++ ++.++.++.||||.|+..|+.+.++.|++ ..+.-..+..|..|.||||+|+++|+.+++++|+
T Consensus       284 G~~~svd~Ll~~Ga~-I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl  361 (929)
T KOG0510|consen  284 GGPESVDNLLGFGAS-INSKNKDEESPLHFAAIYGRINTVERLLQ-ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLL  361 (929)
T ss_pred             CChhHHHHHHHcCCc-ccccCCCCCCchHHHHHcccHHHHHHHHh-CcCccccccccccCCCchhhhhhcCHHHHHHHHH
Confidence            999999999999999 89999999999999999999999999998 3344555667889999999999999999999999


Q ss_pred             HcCCcchhhcc---cCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHH
Q 039828          308 EASDLTDKLIN---EMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDI  364 (626)
Q Consensus       308 ~~~~~~~~~in---~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~l  364 (626)
                      +.|    ++.+   ..|.+|+||||+|++.|+..+|+.|+.+| +++..+|+.|.+++|+
T Consensus       362 ~~G----A~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~G-a~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  362 NKG----ALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHG-ADIGVKNKKGKSAFDT  416 (929)
T ss_pred             hcC----hhhhcccccccCCchhhhHHHHhccHHHHHHHHHcC-Cceeeccccccccccc
Confidence            999    4443   56999999999999999999999999999 9999999999999995

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=9.6e-43  Score=368.92  Aligned_cols=318  Identities=16%  Similarity=0.126  Sum_probs=269.7

Q ss_pred             cCCC-CcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhH
Q 039828           10 SPSG-NTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKF   88 (626)
Q Consensus        10 ~~~g-~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~   88 (626)
                      .+.| .++||.++..+. ...+  ++++|++.+++ ++.+|..|+||||+||..|+.++|++|+++|+++          
T Consensus        33 ~~~g~~~~Lh~~~~~~~-~~~~--iv~~Ll~~Gad-vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi----------   98 (446)
T PHA02946         33 EPSGNYHILHAYCGIKG-LDER--FVEELLHRGYS-PNETDDDGNYPLHIASKINNNRIVAMLLTHGADP----------   98 (446)
T ss_pred             CCCCCChHHHHHHHhcC-CCHH--HHHHHHHCcCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC----------
Confidence            3444 699999886443 1145  99999999886 8999999999999999999999999999999876          


Q ss_pred             HHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 039828           89 LMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYIL  168 (626)
Q Consensus        89 ~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  168 (626)
                        +.+|.+|.||||+|+.       .++        ...++++.|+++|++++...|..|.|||| |+..|+.+++++|+
T Consensus        99 --n~~d~~g~TpLh~A~~-------~~~--------~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll  160 (446)
T PHA02946         99 --NACDKQHKTPLYYLSG-------TDD--------EVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIM  160 (446)
T ss_pred             --CCCCCCCCCHHHHHHH-------cCC--------chHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHH
Confidence              3489999999999986       332        01789999999999998677999999997 77789999999999


Q ss_pred             HhCCCCCccccccCCCCHHHHHHHhCC--HHHHHHHHhcCCccccccCCCCCchhhHHhhCC--CHHHHHHhhhcCCCcc
Q 039828          169 EALPVNDDCDAKLEGKSPVKVAIELQK--LGLLKMMHDKQPALLLIQDEQMNTPMHWAASVD--HLEGVRFLYEINPDSV  244 (626)
Q Consensus       169 ~~~~~~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~  244 (626)
                      +.+.  +....+..|.||||.|+..++  .+++++|++.+ .+++.+|.+|.||||+|+..|  +.+++++|++ +++ +
T Consensus       161 ~~ga--d~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~G-adin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad-i  235 (446)
T PHA02946        161 SIGF--EARIVDKFGKNHIHRHLMSDNPKASTISWMMKLG-ISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD-V  235 (446)
T ss_pred             hccc--cccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC-C
Confidence            9887  445566789999999988655  68999999998 888999999999999999986  8899999985 666 8


Q ss_pred             cccCCCCChHHHHHHhcCC-hHHHHHHHhccCCCCCc-----------------ccc-cCCCchHHHHHHHcCChHHHHH
Q 039828          245 LQKNEEGLYPFHLASANGC-VPVMGEFLEKENMPHPN-----------------ELF-NNKGQNILHVAAKKGRDVSVTH  305 (626)
Q Consensus       245 ~~~d~~g~tpLh~A~~~g~-~~~v~~Ll~~g~~~~~~-----------------~~~-d~~g~t~Lh~A~~~~~~~i~~~  305 (626)
                      +.+|..|.||||+|+..++ .++++.|+.+|......                 ... +..|+||||+|+.+|+.+++++
T Consensus       236 n~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~  315 (446)
T PHA02946        236 NKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKY  315 (446)
T ss_pred             CCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHH
Confidence            8999999999999999988 58999999876432110                 011 2357799999999999999999


Q ss_pred             HHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhccccccccc
Q 039828          306 ILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFS  377 (626)
Q Consensus       306 Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~~  377 (626)
                      |++++           .+|+||||+|+..++.+++++|+.+| +++|.. .+|.||+++|...++.++.+.+
T Consensus       316 Ll~~~-----------~~~~t~L~~A~~~~~~~~v~~Ll~~g-a~~n~~-~~G~t~l~~a~~~~~~~~~~~l  374 (446)
T PHA02946        316 LLDND-----------IICEDAMYYAVLSEYETMVDYLLFNH-FSVDSV-VNGHTCMSECVRLNNPVILSKL  374 (446)
T ss_pred             HHHCC-----------CccccHHHHHHHhCHHHHHHHHHHCC-CCCCCc-cccccHHHHHHHcCCHHHHHHH
Confidence            99986           25799999999999999999999999 999996 5899999999999888877753

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-42  Score=392.01  Aligned_cols=323  Identities=20%  Similarity=0.194  Sum_probs=275.2

Q ss_pred             ccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHH----------------------------
Q 039828            9 TSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAA----------------------------   60 (626)
Q Consensus         9 ~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa----------------------------   60 (626)
                      .+..+.||||+|+..|+   .+  +|+.|++.+|+.++..|..|+||||+|+                            
T Consensus        37 ~~~~~~t~LH~A~~~g~---~e--~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  111 (682)
T PHA02876         37 NESIPFTAIHQALQLRQ---ID--IVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASII  111 (682)
T ss_pred             cccccchHHHHHHHHHh---hh--HHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHH
Confidence            46678999999999999   99  9999999999988999999999999777                            


Q ss_pred             ------------------------------------------HcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCC
Q 039828           61 ------------------------------------------RDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGN   98 (626)
Q Consensus        61 ------------------------------------------~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~   98 (626)
                                                                ..|+.+++++|++.|+++            +.+|..|.
T Consensus       112 ~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gadv------------n~~d~~G~  179 (682)
T PHA02876        112 LNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADV------------NAKDIYCI  179 (682)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCCC------------CCCCCCCC
Confidence                                                      456778888888888765            35888999


Q ss_pred             CHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCC----
Q 039828           99 TALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVN----  174 (626)
Q Consensus        99 T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~----  174 (626)
                      ||||+|+.       .|+          .+++++|+++|++++ ..+.+|.||||+|+..|+.+++++|++.++..    
T Consensus       180 TpLh~Aa~-------~G~----------~~iv~~LL~~Gad~n-~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~  241 (682)
T PHA02876        180 TPIHYAAE-------RGN----------AKMVNLLLSYGADVN-IIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKND  241 (682)
T ss_pred             CHHHHHHH-------CCC----------HHHHHHHHHCCCCcC-ccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCc
Confidence            99999999       999          999999999999987 67889999999999999999999888765422    


Q ss_pred             -----------------------CccccccCCCCHHHHHHHhCCH-HHHHHHHhcCCccccccCCCCCchhhHHhhCC-C
Q 039828          175 -----------------------DDCDAKLEGKSPVKVAIELQKL-GLLKMMHDKQPALLLIQDEQMNTPMHWAASVD-H  229 (626)
Q Consensus       175 -----------------------~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g-~  229 (626)
                                             +....+..|.||||.|+..++. ++++.|++.+ .+++.+|..|.||||+|+..| +
T Consensus       242 ~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~g-adin~~d~~g~TpLh~Aa~~g~~  320 (682)
T PHA02876        242 LSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERG-ADVNAKNIKGETPLYLMAKNGYD  320 (682)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCCC
Confidence                                   1223445789999999999986 5888888887 778889999999999999998 5


Q ss_pred             HHHHHHhhhcCCCcccccCCCCChHHHHHHhc-CChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHH
Q 039828          230 LEGVRFLYEINPDSVLQKNEEGLYPFHLASAN-GCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE  308 (626)
Q Consensus       230 ~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~  308 (626)
                      .+.++.|+..+++ ++..|..|.||||.|+.. ++.++++.|++.|.+++   .+|..|+||||+|+..++.+++++|++
T Consensus       321 ~~~v~~Ll~~gad-in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin---~~d~~G~TpLh~Aa~~~~~~iv~~Ll~  396 (682)
T PHA02876        321 TENIRTLIMLGAD-VNAADRLYITPLHQASTLDRNKDIVITLLELGANVN---ARDYCDKTPIHYAAVRNNVVIINTLLD  396 (682)
T ss_pred             HHHHHHHHHcCCC-CCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCc---cCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            8999999999888 788899999999999885 57888888888776554   458889999999999999999999999


Q ss_pred             cCCcchhhcccCCCCCCCHHHHHHHhCC-HHHHHHHhhCCCCcccccccCCCCHHHHHHHhc-ccccccc
Q 039828          309 ASDLTDKLINEMDDDGNTPLHLAALYGH-YFVAVILGKDGRAESDIINFYGQTAYDIAEQQY-AKIIPEF  376 (626)
Q Consensus       309 ~~~~~~~~in~~d~~G~TpLhlA~~~~~-~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~-~~~i~~~  376 (626)
                      .|    ++++..+..|.||||+|+..++ ..++++|++.| +++|.+|.+|+||||+|+..+ +.+++++
T Consensus       397 ~g----ad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g-adin~~d~~G~TpLh~Aa~~~~~~~iv~l  461 (682)
T PHA02876        397 YG----ADIEALSQKIGTALHFALCGTNPYMSVKTLIDRG-ANVNSKNKDLSTPLHYACKKNCKLDVIEM  461 (682)
T ss_pred             CC----CCccccCCCCCchHHHHHHcCCHHHHHHHHHhCC-CCCCcCCCCCChHHHHHHHhCCcHHHHHH
Confidence            98    7888889999999999987665 46788899888 999999999999999998865 3344443

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.2e-40  Score=370.99  Aligned_cols=319  Identities=18%  Similarity=0.160  Sum_probs=259.9

Q ss_pred             CCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHh
Q 039828           13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEM   92 (626)
Q Consensus        13 g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~   92 (626)
                      ..++|+.|+..|+   .+  ++++|++.+.+ ++.+|..|+||||+||..|+.++|++|+++|++++            .
T Consensus       145 ~~~~l~~~i~~~~---~~--i~k~Ll~~Gad-vn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n------------~  206 (682)
T PHA02876        145 YMKLIKERIQQDE---LL--IAEMLLEGGAD-VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVN------------I  206 (682)
T ss_pred             hhHHHHHHHHCCc---HH--HHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC------------c
Confidence            4566777777777   66  77777777765 77777777777777777777777777777776542            3


Q ss_pred             hccCCCCHHHHHHHhhhhhhccCCCC-----------CCCCCC--------cHHHHHHHhhcCCCCcccccCCCCCcHHH
Q 039828           93 KNVRGNTALHEALNALQDAKKDKNKP-----------KEDGVT--------SLDSLARSLVSEDPNASYLMNVDCKSPLY  153 (626)
Q Consensus        93 ~~~~g~T~Lh~A~~~~~~~~~~~~~~-----------~~~~~~--------~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~  153 (626)
                      .+.+|.||||.|+.       .++..           ......        .-.++++.|++.+.+++ ..+..|.||||
T Consensus       207 ~~~~g~t~L~~A~~-------~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn-~~d~~g~TpLh  278 (682)
T PHA02876        207 IALDDLSVLECAVD-------SKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVN-SIDDCKNTPLH  278 (682)
T ss_pred             cCCCCCCHHHHHHH-------cCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHH
Confidence            56667777777766       33300           000000        00556666777777766 56788999999


Q ss_pred             HHHHcCCH-HHHHHHHHhCCCCCccccccCCCCHHHHHHHhC-CHHHHHHHHhcCCccccccCCCCCchhhHHhhC-CCH
Q 039828          154 LAVESKNE-DILEYILEALPVNDDCDAKLEGKSPVKVAIELQ-KLGLLKMMHDKQPALLLIQDEQMNTPMHWAASV-DHL  230 (626)
Q Consensus       154 ~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~-g~~  230 (626)
                      +|+..|+. +++++|++.+..  ....+..|.||||.|+..| ..++++.|+..+ .+++..|..|.||||+|+.. ++.
T Consensus       279 ~Aa~~~~~~~iv~lLl~~gad--in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~g-adin~~d~~g~TpLh~A~~~~~~~  355 (682)
T PHA02876        279 HASQAPSLSRLVPKLLERGAD--VNAKNIKGETPLYLMAKNGYDTENIRTLIMLG-ADVNAADRLYITPLHQASTLDRNK  355 (682)
T ss_pred             HHHhCCCHHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcC-CCCCCcccCCCcHHHHHHHhCCcH
Confidence            99999996 689999998874  4456678999999999999 599999999998 78899999999999999985 578


Q ss_pred             HHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCC-hHHHHHHHHc
Q 039828          231 EGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGR-DVSVTHILEA  309 (626)
Q Consensus       231 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~-~~i~~~Ll~~  309 (626)
                      ++++.|++.+++ ++.+|..|.||||+|+..|+.++++.|++.|++++.   .+..|.||||+|+..+. ..++++|++.
T Consensus       356 ~iv~lLl~~gad-in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~---~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~  431 (682)
T PHA02876        356 DIVITLLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEA---LSQKIGTALHFALCGTNPYMSVKTLIDR  431 (682)
T ss_pred             HHHHHHHHcCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccc---cCCCCCchHHHHHHcCCHHHHHHHHHhC
Confidence            999999999988 888999999999999999999999999998866654   47889999999998765 5679999999


Q ss_pred             CCcchhhcccCCCCCCCHHHHHHHhC-CHHHHHHHhhCCCCcccccccCCCCHHHHHHHhc
Q 039828          310 SDLTDKLINEMDDDGNTPLHLAALYG-HYFVAVILGKDGRAESDIINFYGQTAYDIAEQQY  369 (626)
Q Consensus       310 ~~~~~~~in~~d~~G~TpLhlA~~~~-~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~  369 (626)
                      |    +++|.+|..|+||||+|+..+ +.+++++|++.| ++++.+|..|.||+++|..++
T Consensus       432 g----adin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~G-ad~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        432 G----ANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNG-ADVNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             C----CCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHhC
Confidence            8    889999999999999999977 689999999999 999999999999999998753

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-39  Score=346.83  Aligned_cols=296  Identities=21%  Similarity=0.210  Sum_probs=262.8

Q ss_pred             cHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhc
Q 039828           15 TLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKN   94 (626)
Q Consensus        15 t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~   94 (626)
                      ..|+.|+..|+   .+  .++.|++.++..++..+..|.||||.|+..|+.++|++|++.|++++            ..+
T Consensus         3 ~~l~~ai~~gd---~~--~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n------------~~~   65 (434)
T PHA02874          3 QDLRMCIYSGD---IE--AIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADIN------------HIN   65 (434)
T ss_pred             HHHHHHHhcCC---HH--HHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC------------CCC
Confidence            46899999999   88  99999998887788899999999999999999999999999998763            478


Q ss_pred             cCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 039828           95 VRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVN  174 (626)
Q Consensus        95 ~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  174 (626)
                      ..|.||||.|+.       .++          .+++++|++++.+...           .+....+.++++.|++.+.. 
T Consensus        66 ~~~~t~L~~A~~-------~~~----------~~iv~~Ll~~g~~~~~-----------~~~~~~~~~~i~~ll~~g~d-  116 (434)
T PHA02874         66 TKIPHPLLTAIK-------IGA----------HDIIKLLIDNGVDTSI-----------LPIPCIEKDMIKTILDCGID-  116 (434)
T ss_pred             CCCCCHHHHHHH-------cCC----------HHHHHHHHHCCCCCCc-----------chhccCCHHHHHHHHHCcCC-
Confidence            889999999999       999          9999999999887642           12344578999999998774 


Q ss_pred             CccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChH
Q 039828          175 DDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYP  254 (626)
Q Consensus       175 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp  254 (626)
                       ....+..|.||||.|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++.+++ .+..+..|.||
T Consensus       117 -~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~g-ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~-~n~~~~~g~tp  193 (434)
T PHA02874        117 -VNIKDAELKTFLHYAIKKGDLESIKMLFEYG-ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY-ANVKDNNGESP  193 (434)
T ss_pred             -CCCCCCCCccHHHHHHHCCCHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCH
Confidence             4456678999999999999999999999998 77888999999999999999999999999999988 77889999999


Q ss_pred             HHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHh
Q 039828          255 FHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALY  334 (626)
Q Consensus       255 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~  334 (626)
                      ||.|+..|+.+++++|++.|...   +.++..|+||||.|+..++ +++++|+. +    .++|.+|.+|+||||+|+..
T Consensus       194 L~~A~~~g~~~iv~~Ll~~g~~i---~~~~~~g~TpL~~A~~~~~-~~i~~Ll~-~----~~in~~d~~G~TpLh~A~~~  264 (434)
T PHA02874        194 LHNAAEYGDYACIKLLIDHGNHI---MNKCKNGFTPLHNAIIHNR-SAIELLIN-N----ASINDQDIDGSTPLHHAINP  264 (434)
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCC---cCCCCCCCCHHHHHHHCCh-HHHHHHHc-C----CCCCCcCCCCCCHHHHHHhc
Confidence            99999999999999999987554   3457899999999999875 56666663 4    67899999999999999987


Q ss_pred             C-CHHHHHHHhhCCCCcccccccCCCCHHHHHHHhc
Q 039828          335 G-HYFVAVILGKDGRAESDIINFYGQTAYDIAEQQY  369 (626)
Q Consensus       335 ~-~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~  369 (626)
                      + +.+++++|+..| ++++.+|..|+||+++|.+.+
T Consensus       265 ~~~~~iv~~Ll~~g-ad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        265 PCDIDIIDILLYHK-ADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             CCcHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHhC
Confidence            6 789999999999 999999999999999999875

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.1e-39  Score=345.62  Aligned_cols=287  Identities=13%  Similarity=0.145  Sum_probs=249.3

Q ss_pred             cccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCC--HHHHHHHHHccccCCCccc
Q 039828            6 KTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGM--LQTAKILVDCAKRMTSSSQ   83 (626)
Q Consensus         6 ~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~--~~iv~~Ll~~~~~~~~~~~   83 (626)
                      .+.+|.+|+||||+||..|+   .+  ++++|++.+++ ++.+|.+|.||||+|+..++  .+++++|+++|++++.   
T Consensus        65 vn~~d~~G~TpLh~Aa~~g~---~e--iv~lLL~~GAd-in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~---  135 (446)
T PHA02946         65 PNETDDDGNYPLHIASKINN---NR--IVAMLLTHGAD-PNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINN---  135 (446)
T ss_pred             CCccCCCCCCHHHHHHHcCC---HH--HHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCccc---
Confidence            46789999999999999999   88  99999999876 89999999999999998764  8999999999987632   


Q ss_pred             hhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCC--H
Q 039828           84 IDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKN--E  161 (626)
Q Consensus        84 ~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~--~  161 (626)
                              ..|.+|.|||| |+.       .++          .++++.|++.+.+++ ..|..|+||||+|+..++  .
T Consensus       136 --------~~d~~g~tpL~-aa~-------~~~----------~~vv~~Ll~~gad~~-~~d~~G~t~Lh~A~~~~~~~~  188 (446)
T PHA02946        136 --------SVDEEGCGPLL-ACT-------DPS----------ERVFKKIMSIGFEAR-IVDKFGKNHIHRHLMSDNPKA  188 (446)
T ss_pred             --------ccCCCCCcHHH-HHH-------CCC----------hHHHHHHHhcccccc-ccCCCCCCHHHHHHHhcCCCH
Confidence                    25789999998 555       777          899999999999987 789999999999987654  6


Q ss_pred             HHHHHHHHhCCCCCccccccCCCCHHHHHHHhC--CHHHHHHHHhcCCccccccCCCCCchhhHHhhCCC-HHHHHHhhh
Q 039828          162 DILEYILEALPVNDDCDAKLEGKSPVKVAIELQ--KLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDH-LEGVRFLYE  238 (626)
Q Consensus       162 ~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~-~~~v~~Ll~  238 (626)
                      +++++|++.+.  +....+..|.||||+|+..+  +.++++.|+. + .+++.+|..|.||||+|+..++ .++++.|++
T Consensus       189 ~~v~~Ll~~Ga--din~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-g-adin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~  264 (446)
T PHA02946        189 STISWMMKLGI--SPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-S-TDVNKQNKFGDSPLTLLIKTLSPAHLINKLLS  264 (446)
T ss_pred             HHHHHHHHcCC--CCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-C-CCCCCCCCCCCCHHHHHHHhCChHHHHHHHHh
Confidence            89999999987  44556678999999999986  7899999985 4 7899999999999999999988 589999998


Q ss_pred             cCCCc-------------------ccc-cCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcC
Q 039828          239 INPDS-------------------VLQ-KNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKG  298 (626)
Q Consensus       239 ~~~~~-------------------~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~  298 (626)
                      ++.+.                   .+. .+..|.||||+|+..|+.+++++|+++|          ..|+||||+|+.++
T Consensus       265 ~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~----------~~~~t~L~~A~~~~  334 (446)
T PHA02946        265 TSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDND----------IICEDAMYYAVLSE  334 (446)
T ss_pred             CCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCC----------CccccHHHHHHHhC
Confidence            87531                   111 1235789999999999999999999954          24789999999999


Q ss_pred             ChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828          299 RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG  347 (626)
Q Consensus       299 ~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g  347 (626)
                      +.+++++|+.+|    +++|.+ .+|+||||+|++.++.++++.|+.+.
T Consensus       335 ~~~~v~~Ll~~g----a~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~  378 (446)
T PHA02946        335 YETMVDYLLFNH----FSVDSV-VNGHTCMSECVRLNNPVILSKLMLHN  378 (446)
T ss_pred             HHHHHHHHHHCC----CCCCCc-cccccHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999998    778885 58999999999999999999999854

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.6e-40  Score=345.02  Aligned_cols=321  Identities=23%  Similarity=0.300  Sum_probs=282.0

Q ss_pred             cccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchh
Q 039828            6 KTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQID   85 (626)
Q Consensus         6 ~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   85 (626)
                      ...++..|+|++|.|+..+.       +    +.+-. .....|..|+||||+|+.....+.++.|++.|++.       
T Consensus        54 ~~~~~~~gd~~~~~~~~~~y-------~----~~~~~-~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~-------  114 (929)
T KOG0510|consen   54 TPGKRAFGDTELHHASARNY-------I----LSKLA-ISYAKDSADNTPLHAAVEYNQGDKIQVLLSYGADT-------  114 (929)
T ss_pred             cchhhhhchhHHHHHHhhcc-------h----hhhhh-hhhhhhcccCchhHHHhhcchHHHHHHHHhcCCCC-------
Confidence            34667889999999999886       2    12212 25668999999999999999999999999999876       


Q ss_pred             hhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHH
Q 039828           86 VKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILE  165 (626)
Q Consensus        86 ~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  165 (626)
                           ...|..+++|+|+|+.       .++          .+..+.|++.+.+++ ..|+.|.||||+||..++.|..+
T Consensus       115 -----~~~n~~~~aplh~A~~-------~~~----------~s~L~~Ll~~~~dvn-l~de~~~TpLh~A~~~~~~E~~k  171 (929)
T KOG0510|consen  115 -----PLRNLNKNAPLHLAAD-------SGN----------YSCLKLLLDYGADVN-LEDENGFTPLHLAARKNKVEAKK  171 (929)
T ss_pred             -----ChhhhhccCchhhccc-------cch----------HHHHHHHHHhcCCcc-ccccCCCchhhHHHhcChHHHHH
Confidence                 3488999999999999       888          999999999999988 88999999999999999999889


Q ss_pred             HHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCC----ccccccCCCCCchhhHHhhCCCHHHHHHhhhcCC
Q 039828          166 YILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQP----ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINP  241 (626)
Q Consensus       166 ~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~----~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~  241 (626)
                      .|++.++  +.+..+.+|+.|+|.|+..|..++.+..+.+.+    ..++..+.++.||||.|+..|+.++++.+|+.+.
T Consensus       172 ~Li~~~a--~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~  249 (929)
T KOG0510|consen  172 ELINKGA--DPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGK  249 (929)
T ss_pred             HHHhcCC--CCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCcc
Confidence            9999987  567778889999999999999999999998322    4578889999999999999999999999999875


Q ss_pred             Cc--------------ccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHH
Q 039828          242 DS--------------VLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL  307 (626)
Q Consensus       242 ~~--------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll  307 (626)
                      ..              ++..|++|.||||+|++.|+++.++.|+..|.+..   .++.++.||||.|+.+|+...++-|+
T Consensus       250 ~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~---~kn~d~~spLH~AA~yg~~ntv~rLL  326 (929)
T KOG0510|consen  250 KIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASIN---SKNKDEESPLHFAAIYGRINTVERLL  326 (929)
T ss_pred             ccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccc---ccCCCCCCchHHHHHcccHHHHHHHH
Confidence            42              34568999999999999999999999999886554   45899999999999999999999999


Q ss_pred             H-cCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccc--ccccCCCCHHHHHHHhcccccccc
Q 039828          308 E-ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD--IINFYGQTAYDIAEQQYAKIIPEF  376 (626)
Q Consensus       308 ~-~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~--~~n~~g~tpl~la~~~~~~~i~~~  376 (626)
                      + .+   ..++|..|..|+||||+|++.||.+++++|++.|+...+  ..|.+|.||||+|+.+|+...++.
T Consensus       327 ~~~~---~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~  395 (929)
T KOG0510|consen  327 QESD---TRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQK  395 (929)
T ss_pred             hCcC---ccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHH
Confidence            9 33   478999999999999999999999999999999944443  459999999999999999877765

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=6.3e-39  Score=348.99  Aligned_cols=301  Identities=14%  Similarity=0.060  Sum_probs=187.2

Q ss_pred             HHHHHHhhCccccccc-ccCCCcHHHHHHH--cCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhh
Q 039828           33 MATTLARKYPFLITMQ-NSKGDTPLHVAAR--DGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQ  109 (626)
Q Consensus        33 ~v~~Ll~~~~~~l~~~-d~~G~TpLh~Aa~--~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~  109 (626)
                      ++++|++++..+++.+ |..|.||||+|+.  +++.++|++|+++|+++            +.+|..|.||||+|++   
T Consensus       157 iVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV------------N~kD~~G~TPLH~Aa~---  221 (764)
T PHA02716        157 LIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV------------NLQNNHLITPLHTYLI---  221 (764)
T ss_pred             HHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC------------CCCCCCCCCHHHHHHH---
Confidence            6777776662235655 6667777776653  34566777777666654            2356667777777766   


Q ss_pred             hhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHH---HcCCHHHHHHHHHhCCCCCccccccCCCCH
Q 039828          110 DAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAV---ESKNEDILEYILEALPVNDDCDAKLEGKSP  186 (626)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~---~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~  186 (626)
                          .++.        -.++++.|+++|++++ .+|..|+||||.|+   ..++.++++.+++.......    .....+
T Consensus       222 ----~g~~--------~~eIVklLLe~GADVN-~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~----~~~~~~  284 (764)
T PHA02716        222 ----TGNV--------CASVIKKIIELGGDMD-MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKV----KNIPMI  284 (764)
T ss_pred             ----cCCC--------CHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccccc----ccchhh
Confidence                4430        0366677777766665 55666777776654   34566666666654321100    011112


Q ss_pred             HH---HHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhh--CCCHHHHHHhhhcCCCcccccCCCCChHHHHHHh-
Q 039828          187 VK---VAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAAS--VDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASA-  260 (626)
Q Consensus       187 L~---~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~--~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~-  260 (626)
                      ++   .|+..|+.++++.|++.+ .+++.+|..|+||||+|+.  .++.+++++|++.|++ ++.+|..|+||||+|+. 
T Consensus       285 L~~~i~AA~~g~leiVklLLe~G-AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~  362 (764)
T PHA02716        285 LHSYITLARNIDISVVYSFLQPG-VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND-LNEPDNIGNTVLHTYLSM  362 (764)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhCC-CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC-CccCCCCCCCHHHHHHHh
Confidence            22   355566666666666665 4556666666666666543  3456666666666665 55666666666666543 


Q ss_pred             -------------cCChHHHHHHHhccCCCCCcccccCCCchHHHHH----HHcCChHHHHHHHHcCCc-----------
Q 039828          261 -------------NGCVPVMGEFLEKENMPHPNELFNNKGQNILHVA----AKKGRDVSVTHILEASDL-----------  312 (626)
Q Consensus       261 -------------~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A----~~~~~~~i~~~Ll~~~~~-----------  312 (626)
                                   .++.+++++|+++|++++.   +|..|+||||.+    ...++.+++++|++.+..           
T Consensus       363 lav~~~ld~~~~~~~~~eVVklLL~~GADIn~---kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~l  439 (764)
T PHA02716        363 LSVVNILDPETDNDIRLDVIQCLISLGADITA---VNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDL  439 (764)
T ss_pred             hhhhccccccccccChHHHHHHHHHCCCCCCC---cCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhh
Confidence                         2456666666666544433   356666666621    223445666665553210           


Q ss_pred             ----------------------------------------------chhhcccCCCCCCCHHHHHHHhCCH-----HHHH
Q 039828          313 ----------------------------------------------TDKLINEMDDDGNTPLHLAALYGHY-----FVAV  341 (626)
Q Consensus       313 ----------------------------------------------~~~~in~~d~~G~TpLhlA~~~~~~-----~iv~  341 (626)
                                                                    ...++|.+|..|+||||+|+..|+.     ++++
T Consensus       440 l~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k  519 (764)
T PHA02716        440 LIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFV  519 (764)
T ss_pred             hhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHH
Confidence                                                          0124577789999999999999876     4559


Q ss_pred             HHhhCCCCcccccccCCCCHHHHHHHhccc
Q 039828          342 ILGKDGRAESDIINFYGQTAYDIAEQQYAK  371 (626)
Q Consensus       342 ~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~  371 (626)
                      +|++.| +++|.+|++|+||||+|.++++.
T Consensus       520 ~LL~~G-ADIN~~d~~G~TPLh~A~~~g~~  548 (764)
T PHA02716        520 YLLSIQ-YNINIPTKNGVTPLMLTMRNNRL  548 (764)
T ss_pred             HHHhCC-CCCcccCCCCCCHHHHHHHcCCc
Confidence            999999 99999999999999999998875

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=6.2e-39  Score=349.06  Aligned_cols=342  Identities=17%  Similarity=0.123  Sum_probs=208.5

Q ss_pred             cccc-cCCCCcHHHHHHhc--CCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCC--HHHHHHHHHccccCCC
Q 039828            6 KTIT-SPSGNTLLHIAAAG--SIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGM--LQTAKILVDCAKRMTS   80 (626)
Q Consensus         6 ~~~~-~~~g~t~LH~Aa~~--g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~--~~iv~~Ll~~~~~~~~   80 (626)
                      .+.+ |..|.||||.|+..  ++   .+  ++++|++++++ ++.+|..|+||||+|++.|+  .++|++|+++|+++  
T Consensus       169 IN~~~d~~G~TpLH~A~~n~~~~---~e--IVklLLe~GAD-VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV--  240 (764)
T PHA02716        169 LNYVCKKTGYGILHAYLGNMYVD---ID--ILEWLCNNGVN-VNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM--  240 (764)
T ss_pred             cccccCCCCCcHHHHHHHhccCC---HH--HHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC--
Confidence            3555 78899999998754  45   67  99999999876 99999999999999999995  59999999999976  


Q ss_pred             ccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCC--------------CCCCC----------CCCcHHHHHHHhhcC
Q 039828           81 SSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKN--------------KPKED----------GVTSLDSLARSLVSE  136 (626)
Q Consensus        81 ~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~--------------~~~~~----------~~~~~~~i~~~Ll~~  136 (626)
                                +.+|..|+||||.|+..    ...++              .....          ....-.++++.|+++
T Consensus       241 ----------N~kD~~G~TPLh~Ai~~----a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~  306 (764)
T PHA02716        241 ----------DMKCVNGMSPIMTYIIN----IDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP  306 (764)
T ss_pred             ----------CCCCCCCCCHHHHHHHh----hhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC
Confidence                      35899999999998641    00223              00000          000003455555555


Q ss_pred             CCCcccccCCCCCcHHHHHHH--cCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHH--------------hCCHHHHH
Q 039828          137 DPNASYLMNVDCKSPLYLAVE--SKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIE--------------LQKLGLLK  200 (626)
Q Consensus       137 ~~~~~~~~~~~g~tpL~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~--------------~g~~~~v~  200 (626)
                      |++++ .+|.+|+||||+|+.  .++.+++++|++.+.  +....+..|.||||.|+.              .++.++++
T Consensus       307 GAdIN-~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GA--DIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVk  383 (764)
T PHA02716        307 GVKLH-YKDSAGRTCLHQYILRHNISTDIIKLLHEYGN--DLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQ  383 (764)
T ss_pred             CCcee-ccCCCCCCHHHHHHHHhCCCchHHHHHHHcCC--CCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHH
Confidence            55544 445555555555432  234455555555544  222333445555555433              13445555


Q ss_pred             HHHhcCCccccccCCCCCchhhH----HhhCCCHHHHHHhhhcCCCccc-------ccCCCCChH--HHHHHhcCChHHH
Q 039828          201 MMHDKQPALLLIQDEQMNTPMHW----AASVDHLEGVRFLYEINPDSVL-------QKNEEGLYP--FHLASANGCVPVM  267 (626)
Q Consensus       201 ~Ll~~~~~~~~~~d~~g~tpLh~----Aa~~g~~~~v~~Ll~~~~~~~~-------~~d~~g~tp--Lh~A~~~g~~~~v  267 (626)
                      +|++.| ++++.+|..|.||||.    |...++.+++++|++.+.....       ..+..+.+|  +|.++..+..+..
T Consensus       384 lLL~~G-ADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~  462 (764)
T PHA02716        384 CLISLG-ADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTD  462 (764)
T ss_pred             HHHHCC-CCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchh
Confidence            555554 4455555555555552    1123445555555554322000       000111111  2333322222211


Q ss_pred             HHHHhccCC---------------CCCcccccCCCchHHHHHHHcCCh-----HHHHHHHHcCCcchhhcccCCCCCCCH
Q 039828          268 GEFLEKENM---------------PHPNELFNNKGQNILHVAAKKGRD-----VSVTHILEASDLTDKLINEMDDDGNTP  327 (626)
Q Consensus       268 ~~Ll~~g~~---------------~~~~~~~d~~g~t~Lh~A~~~~~~-----~i~~~Ll~~~~~~~~~in~~d~~G~Tp  327 (626)
                      ..+.+....               ....+..|..|+||||+|+.+|+.     +++++|++.|    +++|.+|.+|+||
T Consensus       463 ~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~G----ADIN~~d~~G~TP  538 (764)
T PHA02716        463 LYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQ----YNINIPTKNGVTP  538 (764)
T ss_pred             hhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCC----CCCcccCCCCCCH
Confidence            111100000               011234578899999999999876     4569999998    8999999999999


Q ss_pred             HHHHHHhCCH-----HHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccccccccchhHH
Q 039828          328 LHLAALYGHY-----FVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMM  384 (626)
Q Consensus       328 LhlA~~~~~~-----~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~~~~~~~~~  384 (626)
                      ||+|+++|+.     ++++.|++.| ++++..      .+.++..+.+..+..++.....+.
T Consensus       539 Lh~A~~~g~~~~~~~eIvk~LL~~g-a~~~~~------~l~~~~~~~~~~~~~ll~~~~~~~  593 (764)
T PHA02716        539 LMLTMRNNRLSGHQWYIVKNILDKR-PNVDIV------IIFLDKCYANGKFPSLLLSEDDII  593 (764)
T ss_pred             HHHHHHcCCccccHHHHHHHHHhcC-CCcchH------HHHHHhhhhhhHHHHHHHHcchhH
Confidence            9999999976     9999999999 888776      378888777777776654444433

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.6e-38  Score=334.73  Aligned_cols=309  Identities=17%  Similarity=0.169  Sum_probs=261.8

Q ss_pred             ccccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccch
Q 039828            5 FKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQI   84 (626)
Q Consensus         5 ~~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   84 (626)
                      ..+..+.+|.||||.|+..|+   .+  ++++|++.+++ ++..+..|.||||+|+..|+.+++++|+++|++...    
T Consensus        27 ~~n~~~~~~~tpL~~A~~~g~---~~--iv~~Ll~~Ga~-~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~----   96 (434)
T PHA02874         27 CINISVDETTTPLIDAIRSGD---AK--IVELFIKHGAD-INHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI----   96 (434)
T ss_pred             CCCCcCCCCCCHHHHHHHcCC---HH--HHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc----
Confidence            346678899999999999999   88  99999999886 888999999999999999999999999999875411    


Q ss_pred             hhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHH
Q 039828           85 DVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDIL  164 (626)
Q Consensus        85 ~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  164 (626)
                                      +  +..       ..+          .++++.|++.+.+++ ..+..|.||||+|+..|+.+++
T Consensus        97 ----------------~--~~~-------~~~----------~~~i~~ll~~g~d~n-~~~~~g~T~Lh~A~~~~~~~~v  140 (434)
T PHA02874         97 ----------------L--PIP-------CIE----------KDMIKTILDCGIDVN-IKDAELKTFLHYAIKKGDLESI  140 (434)
T ss_pred             ----------------c--hhc-------cCC----------HHHHHHHHHCcCCCC-CCCCCCccHHHHHHHCCCHHHH
Confidence                            1  112       334          789999999999987 6789999999999999999999


Q ss_pred             HHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcc
Q 039828          165 EYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSV  244 (626)
Q Consensus       165 ~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~  244 (626)
                      ++|++.++.  ....+..|.||||.|+..++.+++++|++.+ ..++..|..|.||||+|+..|+.+++++|++.+++ .
T Consensus       141 ~~Ll~~gad--~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~-i  216 (434)
T PHA02874        141 KMLFEYGAD--VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG-AYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH-I  216 (434)
T ss_pred             HHHHhCCCC--CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-C
Confidence            999999874  3455678999999999999999999999998 67888999999999999999999999999999988 7


Q ss_pred             cccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcC-ChHHHHHHHHcCCcchhhcccCCCC
Q 039828          245 LQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKG-RDVSVTHILEASDLTDKLINEMDDD  323 (626)
Q Consensus       245 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~-~~~i~~~Ll~~~~~~~~~in~~d~~  323 (626)
                      ...+..|.||||.|+..+. +.+++|+. |..   .+.+|..|+||||+|+..+ +.+++++|++.|    ++++.+|..
T Consensus       217 ~~~~~~g~TpL~~A~~~~~-~~i~~Ll~-~~~---in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~g----ad~n~~d~~  287 (434)
T PHA02874        217 MNKCKNGFTPLHNAIIHNR-SAIELLIN-NAS---INDQDIDGSTPLHHAINPPCDIDIIDILLYHK----ADISIKDNK  287 (434)
T ss_pred             cCCCCCCCCHHHHHHHCCh-HHHHHHHc-CCC---CCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCc----CCCCCCCCC
Confidence            7888999999999999875 56666664 333   3456899999999999876 789999999998    889999999


Q ss_pred             CCCHHHHHHHhC-CHHHHHHHhhCCCCcccccccCC-CCHHHHHHHhccccc
Q 039828          324 GNTPLHLAALYG-HYFVAVILGKDGRAESDIINFYG-QTAYDIAEQQYAKII  373 (626)
Q Consensus       324 G~TpLhlA~~~~-~~~iv~~Ll~~g~~d~~~~n~~g-~tpl~la~~~~~~~i  373 (626)
                      |+||||+|++.+ ..++++.|+..+ +.++..+..+ .+++..+.......+
T Consensus       288 g~TpL~~A~~~~~~~~~ik~ll~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~  338 (434)
T PHA02874        288 GENPIDTAFKYINKDPVIKDIIANA-VLIKEADKLKDSDFLEHIEIKDNKEF  338 (434)
T ss_pred             CCCHHHHHHHhCCccHHHHHHHHhc-CchhhccccchhHHHHHHHHhccchH
Confidence            999999999987 678899999888 6555444443 445655554433333

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.1e-37  Score=335.68  Aligned_cols=288  Identities=18%  Similarity=0.206  Sum_probs=253.6

Q ss_pred             HHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcC---CHHHHHHHHHccccCCCccchhhhHHHHhhccC
Q 039828           20 AAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDG---MLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVR   96 (626)
Q Consensus        20 Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g---~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~   96 (626)
                      ++..++   .+  ++++|++.+.+ ++.++..|.||||+|+..|   +.++++.|++.|+++            +.++..
T Consensus        21 ~~~~~~---~~--~v~~Ll~~ga~-vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi------------n~~~~~   82 (471)
T PHA03095         21 NASNVT---VE--EVRRLLAAGAD-VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV------------NAPERC   82 (471)
T ss_pred             cCCCCC---HH--HHHHHHHcCCC-cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC------------CCCCCC
Confidence            344455   67  99999999876 8999999999999999999   999999999999876            347889


Q ss_pred             CCCHHHHHHHhhhhhhccC-CCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHH--HcCCHHHHHHHHHhCCC
Q 039828           97 GNTALHEALNALQDAKKDK-NKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAV--ESKNEDILEYILEALPV  173 (626)
Q Consensus        97 g~T~Lh~A~~~~~~~~~~~-~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~~~~  173 (626)
                      |.||||+|+.       .+ +          .++++.|+++|++++ ..|..|.||||+|+  ..++.+++++|++.+++
T Consensus        83 g~TpLh~A~~-------~~~~----------~~iv~lLl~~ga~in-~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad  144 (471)
T PHA03095         83 GFTPLHLYLY-------NATT----------LDVIKLLIKAGADVN-AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD  144 (471)
T ss_pred             CCCHHHHHHH-------cCCc----------HHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC
Confidence            9999999999       77 6          899999999999987 78899999999999  56788999999999874


Q ss_pred             CCccccccCCCCHHHHHHHhC--CHHHHHHHHhcCCccccccCCCCCchhhHHhhC--CCHHHHHHhhhcCCCcccccCC
Q 039828          174 NDDCDAKLEGKSPVKVAIELQ--KLGLLKMMHDKQPALLLIQDEQMNTPMHWAASV--DHLEGVRFLYEINPDSVLQKNE  249 (626)
Q Consensus       174 ~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~--g~~~~v~~Ll~~~~~~~~~~d~  249 (626)
                        ....+..|.||||.|+..+  +.++++.|++.+ ..++..|..|.||||+++..  ++.++++.|++.+++ ++.+|.
T Consensus       145 --~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g-~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~-~~~~d~  220 (471)
T PHA03095        145 --VNALDLYGMTPLAVLLKSRNANVELLRLLIDAG-ADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCD-PAATDM  220 (471)
T ss_pred             --CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC-CcccCC
Confidence              4556678999999998876  689999999998 55566699999999999864  789999999999998 888999


Q ss_pred             CCChHHHHHHhcCCh--HHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCH
Q 039828          250 EGLYPFHLASANGCV--PVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTP  327 (626)
Q Consensus       250 ~g~tpLh~A~~~g~~--~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~Tp  327 (626)
                      .|.||||+|+..|+.  .+++.|++.|.+.   +.+|..|+||||+|+..|+.+++++|++.|    +++|.+|.+|+||
T Consensus       221 ~g~tpLh~Aa~~~~~~~~~v~~ll~~g~di---n~~d~~g~TpLh~A~~~~~~~~v~~LL~~g----ad~n~~~~~g~tp  293 (471)
T PHA03095        221 LGNTPLHSMATGSSCKRSLVLPLLIAGISI---NARNRYGQTPLHYAAVFNNPRACRRLIALG----ADINAVSSDGNTP  293 (471)
T ss_pred             CCCCHHHHHHhcCCchHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCcccCCCCCCH
Confidence            999999999999975  5788888877554   445889999999999999999999999998    8999999999999


Q ss_pred             HHHHHHhCCHHHHHHHhhCCCCcccccc
Q 039828          328 LHLAALYGHYFVAVILGKDGRAESDIIN  355 (626)
Q Consensus       328 LhlA~~~~~~~iv~~Ll~~g~~d~~~~n  355 (626)
                      ||+|+..|+.++++.|++.+ ++++...
T Consensus       294 l~~A~~~~~~~~v~~LL~~~-~~~~~~~  320 (471)
T PHA03095        294 LSLMVRNNNGRAVRAALAKN-PSAETVA  320 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHhC-CCHHHHH
Confidence            99999999999999999988 7776543

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=2e-37  Score=330.78  Aligned_cols=333  Identities=17%  Similarity=0.158  Sum_probs=238.6

Q ss_pred             ccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcC--CHHHHHHHHHccccCCCccch
Q 039828            7 TITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDG--MLQTAKILVDCAKRMTSSSQI   84 (626)
Q Consensus         7 ~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~~~   84 (626)
                      +.+|.+|+||||+|+..|+..+.+  +|++|++.|++ ++.+|..|+||||+|+..|  +.|+|++|++.|++...    
T Consensus        35 ~~kd~~G~TaLh~A~~~~~~~~~e--ivklLLs~GAd-in~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~----  107 (672)
T PHA02730         35 KHIDRRGNNALHCYVSNKCDTDIK--IVRLLLSRGVE-RLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASN----  107 (672)
T ss_pred             hhcCCCCCcHHHHHHHcCCcCcHH--HHHHHHhCCCC-CcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCc----
Confidence            477899999999999986311277  99999999987 8999999999999999977  79999999999875421    


Q ss_pred             hhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhc-CCCCcccccC----CCCCcHHHHHHHcC
Q 039828           85 DVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVS-EDPNASYLMN----VDCKSPLYLAVESK  159 (626)
Q Consensus        85 ~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~-~~~~~~~~~~----~~g~tpL~~A~~~g  159 (626)
                            +..+..+++|||.++.     ..+++          .+++++|++ .+.+++...+    ..|.+|++++...+
T Consensus       108 ------~~~~~~~d~~l~~y~~-----s~n~~----------~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~  166 (672)
T PHA02730        108 ------ELTSNINDFDLYSYMS-----SDNID----------LRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNP  166 (672)
T ss_pred             ------ccccccCCchHHHHHH-----hcCCc----------HHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCC
Confidence                  2367779999999886     11444          788888886 4445442222    36788888888888


Q ss_pred             CHHHHHHHHHhCCCCCc-----cccccCC-CCHHHHHH------HhCCHHHHHHHHhcCCccccccCCCCCchhhH--Hh
Q 039828          160 NEDILEYILEALPVNDD-----CDAKLEG-KSPVKVAI------ELQKLGLLKMMHDKQPALLLIQDEQMNTPMHW--AA  225 (626)
Q Consensus       160 ~~~~v~~Ll~~~~~~~~-----~~~~~~g-~t~L~~A~------~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~--Aa  225 (626)
                      +.++|++|+++|+....     ...+..+ .|.||+++      ..++.++++.|+.+| ++++.+|..|.||||+  +.
T Consensus       167 ~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~G-adIN~kd~~G~TpLh~~~~~  245 (672)
T PHA02730        167 RPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNN-VSIHGRDEGGSLPIQYYWSC  245 (672)
T ss_pred             chHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHc
Confidence            88888888888775421     1122233 34455333      346788888888888 7888888888888884  55


Q ss_pred             hCCCHHHHHHhhh--------------------------------cCCCcccc--------------------cCCCCCh
Q 039828          226 SVDHLEGVRFLYE--------------------------------INPDSVLQ--------------------KNEEGLY  253 (626)
Q Consensus       226 ~~g~~~~v~~Ll~--------------------------------~~~~~~~~--------------------~d~~g~t  253 (626)
                      ..|+.|++++|++                                ++.+ ...                    .+..|.+
T Consensus       246 ~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n  324 (672)
T PHA02730        246 STIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVD-MEIVNLLIEGRHTLIDVMRSITSYDSREYN  324 (672)
T ss_pred             CcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcc-hHHHHHHhhccCcchhhhhccccccccccc
Confidence            5677888888888                                4444 222                    3444543


Q ss_pred             ---------------------HHHHHHhcC---ChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCC----hHHHHH
Q 039828          254 ---------------------PFHLASANG---CVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGR----DVSVTH  305 (626)
Q Consensus       254 ---------------------pLh~A~~~g---~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~----~~i~~~  305 (626)
                                           .||.-...+   +.+++++|+++|++.+.    +..|+||||+|+..+.    .+++++
T Consensus       325 ~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~----k~~G~TpLH~Aa~~nnn~i~~eIvel  400 (672)
T PHA02730        325 HYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDK----TTDNNYPLHDYFVNNNNIVDVNVVRF  400 (672)
T ss_pred             hhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc----CCCCCcHHHHHHHHcCCcchHHHHHH
Confidence                                 455555544   57888888888766653    2578888888877764    688888


Q ss_pred             HHHcCCcchhhcccCCCCCCCHHHH---HHHhC---------CHHHHHHHhhCCCCcccccccCCCCHHHHHHHhccccc
Q 039828          306 ILEASDLTDKLINEMDDDGNTPLHL---AALYG---------HYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKII  373 (626)
Q Consensus       306 Ll~~~~~~~~~in~~d~~G~TpLhl---A~~~~---------~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i  373 (626)
                      |+++|+.  .++|.+|..|.||||.   |...+         ..+++++|+++| +++|.+|..|+|||++|+..++.++
T Consensus       401 LIs~Ga~--~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~G-ADINakD~~G~TPLh~Aa~~~~~ei  477 (672)
T PHA02730        401 IVENNGH--MAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYM-DDIDMIDNENKTLLYYAVDVNNIQF  477 (672)
T ss_pred             HHHcCCC--ccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcc-cchhccCCCCCCHHHHHHHhCCHHH
Confidence            8888621  2577888888888873   33222         234678888888 8888888888888888887766555


Q ss_pred             ccc
Q 039828          374 PEF  376 (626)
Q Consensus       374 ~~~  376 (626)
                      +++
T Consensus       478 ve~  480 (672)
T PHA02730        478 ARR  480 (672)
T ss_pred             HHH
Confidence            554

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-36  Score=333.95  Aligned_cols=342  Identities=15%  Similarity=0.097  Sum_probs=216.0

Q ss_pred             cccccCCCCcHHHHHHhc---CCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHH----HHHHHHHcccc-
Q 039828            6 KTITSPSGNTLLHIAAAG---SIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQ----TAKILVDCAKR-   77 (626)
Q Consensus         6 ~~~~~~~g~t~LH~Aa~~---g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~----iv~~Ll~~~~~-   77 (626)
                      .+.+|.+|+||||+||..   |+   .+  ++++|++.+.+ ++.+|..|.||||+|+.+|+.+    +++.|++.+.. 
T Consensus        25 ~~~~d~~g~t~Lh~a~~~~~~~~---~~--~v~~Ll~~ga~-v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~   98 (661)
T PHA02917         25 NDTRNQFKNNALHAYLFNEHCNN---VE--VVKLLLDSGTN-PLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS   98 (661)
T ss_pred             ccccCCCCCcHHHHHHHhhhcCc---HH--HHHHHHHCCCC-ccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC
Confidence            356689999999998665   66   88  99999998876 7889999999999999999854    55777765321 


Q ss_pred             -CCCc------c----ch-------hhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCC
Q 039828           78 -MTSS------S----QI-------DVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPN  139 (626)
Q Consensus        78 -~~~~------~----~~-------~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~  139 (626)
                       .+..      +    ..       +....++.+|.+|.||||.++..     ..++          .+++++|+++|++
T Consensus        99 n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~-----~~~~----------~eivklLi~~Ga~  163 (661)
T PHA02917         99 NINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMT-----DDPV----------PEIIDLFIENGCS  163 (661)
T ss_pred             CCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHc-----cCCC----------HHHHHHHHHcCCC
Confidence             1110      0    00       01112244566666666644320     0445          6666666666666


Q ss_pred             cccc--cCCCC-----------CcHHHHHHH-----------cCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCC
Q 039828          140 ASYL--MNVDC-----------KSPLYLAVE-----------SKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQK  195 (626)
Q Consensus       140 ~~~~--~~~~g-----------~tpL~~A~~-----------~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~  195 (626)
                      ++..  .+..|           .||||+|+.           .++.+++++|+++|+  +....+..|.||||.|+..|+
T Consensus       164 vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga--dvn~~d~~G~TpLh~A~~~g~  241 (661)
T PHA02917        164 VLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGI--KPSSIDKNYCTALQYYIKSSH  241 (661)
T ss_pred             ccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCC--CcccCCCCCCcHHHHHHHcCC
Confidence            6421  11223           366666654           345666666666665  333444556666666666665


Q ss_pred             H--HHHHHHHhcCCcc---ccccCCCCCchhhHHhh-------C--CCHHHHHHhhhcCCCcc------cccCC------
Q 039828          196 L--GLLKMMHDKQPAL---LLIQDEQMNTPMHWAAS-------V--DHLEGVRFLYEINPDSV------LQKNE------  249 (626)
Q Consensus       196 ~--~~v~~Ll~~~~~~---~~~~d~~g~tpLh~Aa~-------~--g~~~~v~~Ll~~~~~~~------~~~d~------  249 (626)
                      .  ++++.|++ +...   ....|..|.+|+|+|+.       .  .+.++++.|++.|++..      +..+.      
T Consensus       242 ~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~  320 (661)
T PHA02917        242 IDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETIS  320 (661)
T ss_pred             CcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHH
Confidence            3  56666654 3111   12344555666666662       1  15566666666665411      00111      


Q ss_pred             ------CCChHHHH---HHhcCC--hHHHHHHHhccCCCCCc---------------------------ccccCCCchHH
Q 039828          250 ------EGLYPFHL---ASANGC--VPVMGEFLEKENMPHPN---------------------------ELFNNKGQNIL  291 (626)
Q Consensus       250 ------~g~tpLh~---A~~~g~--~~~v~~Ll~~g~~~~~~---------------------------~~~d~~g~t~L  291 (626)
                            .+.+++|.   |+..|.  .++++.|++.|++++..                           ...+..|+|||
T Consensus       321 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL  400 (661)
T PHA02917        321 LILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPI  400 (661)
T ss_pred             HHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChh
Confidence                  12333333   233554  34788888877654322                           11244689999


Q ss_pred             HHHHHcCC-----------------------hHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCC
Q 039828          292 HVAAKKGR-----------------------DVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGR  348 (626)
Q Consensus       292 h~A~~~~~-----------------------~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~  348 (626)
                      |.|++++.                       .+++++|+++|    +++|.+|..|+||||+|+..++.+++++|++.| 
T Consensus       401 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~G----AdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~G-  475 (661)
T PHA02917        401 GHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYL----KDINMIDKRGETLLHKAVRYNKQSLVSLLLESG-  475 (661)
T ss_pred             HHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCC----CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCc-
Confidence            98875432                       45678888888    888999999999999999999999999999998 


Q ss_pred             CcccccccCCCCHHHHHHH-hcccccccc
Q 039828          349 AESDIINFYGQTAYDIAEQ-QYAKIIPEF  376 (626)
Q Consensus       349 ~d~~~~n~~g~tpl~la~~-~~~~~i~~~  376 (626)
                      ++++.+|..|.|||++|.. .++.+++++
T Consensus       476 Adin~~d~~G~T~L~~A~~~~~~~~iv~~  504 (661)
T PHA02917        476 SDVNIRSNNGYTCIAIAINESRNIELLKM  504 (661)
T ss_pred             CCCCCCCCCCCCHHHHHHHhCCCHHHHHH
Confidence            9999999999999999985 444444443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.2e-37  Score=333.31  Aligned_cols=281  Identities=21%  Similarity=0.238  Sum_probs=255.7

Q ss_pred             HHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHH-----HHHh
Q 039828           33 MATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHE-----ALNA  107 (626)
Q Consensus        33 ~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~-----A~~~  107 (626)
                      +++++++.+ +..+..+..+.||||+|+..|+.++|++|++.|+++.            ..+..|.||||+     |+. 
T Consensus        17 ~~~~~~~~~-~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~------------~~~~~~~t~L~~~~~~~a~~-   82 (480)
T PHA03100         17 NIKYIIMED-DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADIN------------SSTKNNSTPLHYLSNIKYNL-   82 (480)
T ss_pred             HHHHHHhcC-ccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCC------------CccccCcCHHHHHHHHHHHh-
Confidence            788888664 5577788999999999999999999999999998763            367889999999     998 


Q ss_pred             hhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHH--HcCCHHHHHHHHHhCCCCCccccccCCCC
Q 039828          108 LQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAV--ESKNEDILEYILEALPVNDDCDAKLEGKS  185 (626)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t  185 (626)
                            .++          .++++.|+++|++++ ..+..|.||||+|+  ..|+.+++++|++.++.  ....+..|.|
T Consensus        83 ------~~~----------~~iv~~Ll~~ga~i~-~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~--~~~~~~~g~t  143 (480)
T PHA03100         83 ------TDV----------KEIVKLLLEYGANVN-APDNNGITPLLYAISKKSNSYSIVEYLLDNGAN--VNIKNSDGEN  143 (480)
T ss_pred             ------hch----------HHHHHHHHHCCCCCC-CCCCCCCchhhHHHhcccChHHHHHHHHHcCCC--CCccCCCCCc
Confidence                  888          999999999999995 88999999999999  99999999999999873  4456678999


Q ss_pred             HHHHHHHhC--CHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCC------ChHHHH
Q 039828          186 PVKVAIELQ--KLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEG------LYPFHL  257 (626)
Q Consensus       186 ~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g------~tpLh~  257 (626)
                      |||.|+..+  +.++++.|++.+ .+++.+|..|.||||+|+..|+.+++++|+++|++ .+..+..|      .||||.
T Consensus       144 ~L~~A~~~~~~~~~iv~~Ll~~g-~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~t~l~~  221 (480)
T PHA03100        144 LLHLYLESNKIDLKILKLLIDKG-VDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD-INAGDIETLLFTIFETPLHI  221 (480)
T ss_pred             HHHHHHHcCCChHHHHHHHHHCC-CCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC-ccCCCCCCCcHHHHHhHHHH
Confidence            999999999  999999999998 67888899999999999999999999999999998 77778888      899999


Q ss_pred             HHhcCC--hHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhC
Q 039828          258 ASANGC--VPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYG  335 (626)
Q Consensus       258 A~~~g~--~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~  335 (626)
                      |+..|+  .++++.|+++|.+++   .+|..|+||||+|+..++.+++++|++.|    +++|.+|..|+||||+|+..+
T Consensus       222 a~~~~~~~~~iv~~Ll~~g~din---~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g----ad~n~~d~~g~tpl~~A~~~~  294 (480)
T PHA03100        222 AACYNEITLEVVNYLLSYGVPIN---IKDVYGFTPLHYAVYNNNPEFVKYLLDLG----ANPNLVNKYGDTPLHIAILNN  294 (480)
T ss_pred             HHHhCcCcHHHHHHHHHcCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCccCCCCCcHHHHHHHhC
Confidence            999999  999999999886554   45899999999999999999999999998    789999999999999999999


Q ss_pred             CHHHHHHHhhCCCCccccccc
Q 039828          336 HYFVAVILGKDGRAESDIINF  356 (626)
Q Consensus       336 ~~~iv~~Ll~~g~~d~~~~n~  356 (626)
                      +.+++++|+++| ++++..+.
T Consensus       295 ~~~iv~~Ll~~g-~~i~~i~~  314 (480)
T PHA03100        295 NKEIFKLLLNNG-PSIKTIIE  314 (480)
T ss_pred             CHHHHHHHHhcC-CCHHHHHH
Confidence            999999999999 88776553

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-36  Score=328.78  Aligned_cols=278  Identities=18%  Similarity=0.181  Sum_probs=249.0

Q ss_pred             HHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccC---CCCCCCCCCcHHHHHHHh
Q 039828           57 HVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDK---NKPKEDGVTSLDSLARSL  133 (626)
Q Consensus        57 h~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~---~~~~~~~~~~~~~i~~~L  133 (626)
                      ..|+..++.++|++|+++|+++            +.++..|.||||+|+.       .+   +          .++++.|
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~v------------n~~~~~g~t~Lh~a~~-------~~~~~~----------~~iv~~L   69 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADV------------NFRGEYGKTPLHLYLH-------YSSEKV----------KDIVRLL   69 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCc------------ccCCCCCCCHHHHHHH-------hcCCCh----------HHHHHHH
Confidence            4567778999999999999876            4588899999999999       66   6          9999999


Q ss_pred             hcCCCCcccccCCCCCcHHHHHHHcC-CHHHHHHHHHhCCCCCccccccCCCCHHHHHH--HhCCHHHHHHHHhcCCccc
Q 039828          134 VSEDPNASYLMNVDCKSPLYLAVESK-NEDILEYILEALPVNDDCDAKLEGKSPVKVAI--ELQKLGLLKMMHDKQPALL  210 (626)
Q Consensus       134 l~~~~~~~~~~~~~g~tpL~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~  210 (626)
                      +++|++++ ..+..|.||||+|+..| +.+++++|++++..  ....+..|.||||.|+  ..++.++++.|++.+ .++
T Consensus        70 l~~Gadin-~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~--in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~g-ad~  145 (471)
T PHA03095         70 LEAGADVN-APERCGFTPLHLYLYNATTLDVIKLLIKAGAD--VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKG-ADV  145 (471)
T ss_pred             HHCCCCCC-CCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCC--CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcC-CCC
Confidence            99999998 77889999999999999 59999999999884  4556678999999999  556899999999998 778


Q ss_pred             cccCCCCCchhhHHhhCC--CHHHHHHhhhcCCCcccccCCCCChHHHHHHhc--CChHHHHHHHhccCCCCCcccccCC
Q 039828          211 LIQDEQMNTPMHWAASVD--HLEGVRFLYEINPDSVLQKNEEGLYPFHLASAN--GCVPVMGEFLEKENMPHPNELFNNK  286 (626)
Q Consensus       211 ~~~d~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~--g~~~~v~~Ll~~g~~~~~~~~~d~~  286 (626)
                      +..|..|.||||+|+..+  +.+++++|++.+++ .+..|..|.||||.|+..  ++.++++.|++.|.+++.   +|..
T Consensus       146 ~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~-~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~---~d~~  221 (471)
T PHA03095        146 NALDLYGMTPLAVLLKSRNANVELLRLLIDAGAD-VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAA---TDML  221 (471)
T ss_pred             CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcc---cCCC
Confidence            899999999999998766  68999999999998 555599999999999875  789999999999877755   4899


Q ss_pred             CchHHHHHHHcCCh--HHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHH
Q 039828          287 GQNILHVAAKKGRD--VSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDI  364 (626)
Q Consensus       287 g~t~Lh~A~~~~~~--~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~l  364 (626)
                      |+||||+|+..++.  .+++.|++.|    .++|.+|..|+||||+|+..|+.+++++|++.| +|++.+|.+|+||+++
T Consensus       222 g~tpLh~Aa~~~~~~~~~v~~ll~~g----~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~g-ad~n~~~~~g~tpl~~  296 (471)
T PHA03095        222 GNTPLHSMATGSSCKRSLVLPLLIAG----ISINARNRYGQTPLHYAAVFNNPRACRRLIALG-ADINAVSSDGNTPLSL  296 (471)
T ss_pred             CCCHHHHHHhcCCchHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHH
Confidence            99999999999874  6788899988    889999999999999999999999999999999 9999999999999999


Q ss_pred             HHHhcccccccc
Q 039828          365 AEQQYAKIIPEF  376 (626)
Q Consensus       365 a~~~~~~~i~~~  376 (626)
                      |...++.++++.
T Consensus       297 A~~~~~~~~v~~  308 (471)
T PHA03095        297 MVRNNNGRAVRA  308 (471)
T ss_pred             HHHhCCHHHHHH
Confidence            999988777665

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.4e-36  Score=322.66  Aligned_cols=276  Identities=19%  Similarity=0.151  Sum_probs=231.9

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCC
Q 039828           45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVT  124 (626)
Q Consensus        45 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~  124 (626)
                      .+..+..+.||||+|+..|+.++|++|++.|+++            +.+|.+|.||||+|+.       .++        
T Consensus        30 ~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadv------------n~~d~~g~TpLh~A~~-------~g~--------   82 (477)
T PHA02878         30 STSASLIPFIPLHQAVEARNLDVVKSLLTRGHNV------------NQPDHRDLTPLHIICK-------EPN--------   82 (477)
T ss_pred             cCcccccCcchHHHHHHcCCHHHHHHHHHCCCCC------------CCCCCCCCCHHHHHHH-------Ccc--------
Confidence            3445678899999999999999999999999866            3488899999999999       888        


Q ss_pred             cHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHh--CCHHHHHHH
Q 039828          125 SLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIEL--QKLGLLKMM  202 (626)
Q Consensus       125 ~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~L  202 (626)
                        .++++.|++.+.....   ..+.+|++.|+..++.++++.|+..+...... .   ....+......  ...++++.|
T Consensus        83 --~~~v~~Ll~~~~~~~~---~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~-~---~~~~~~~~~~~~~~~~~iv~~L  153 (477)
T PHA02878         83 --KLGMKEMIRSINKCSV---FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQT-I---DLVYIDKKSKDDIIEAEITKLL  153 (477)
T ss_pred             --HhHHHHHHHHHhcccc---ccchhhHHHHHHcCCHHHHHHHHhCcccCccc-C---cHHHHhhccchhhHHHHHHHHH
Confidence              8999999987655442   56789999999999999999999864321110 0   01111111111  234699999


Q ss_pred             HhcCCccccccCCC-CCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcc
Q 039828          203 HDKQPALLLIQDEQ-MNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNE  281 (626)
Q Consensus       203 l~~~~~~~~~~d~~-g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~  281 (626)
                      ++.+ .+++..|.. |.||||+|+..|+.+++++|++.|++ ++..|..|.||||.|+..|+.++++.|++.|++++   
T Consensus       154 l~~g-adin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in---  228 (477)
T PHA02878        154 LSYG-ADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN-VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD---  228 (477)
T ss_pred             HHcC-CCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC---
Confidence            9998 778888888 99999999999999999999999988 78899999999999999999999999999886654   


Q ss_pred             cccCCCchHHHHHHHc-CChHHHHHHHHcCCcchhhcccCCC-CCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCC
Q 039828          282 LFNNKGQNILHVAAKK-GRDVSVTHILEASDLTDKLINEMDD-DGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQ  359 (626)
Q Consensus       282 ~~d~~g~t~Lh~A~~~-~~~~i~~~Ll~~~~~~~~~in~~d~-~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~  359 (626)
                      .+|..|+||||+|+.. ++.+++++|++.|    +++|.++. .|+||||+|  .++.+++++|++.| +|++..|.+|.
T Consensus       229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g----advn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~g-adin~~d~~g~  301 (477)
T PHA02878        229 ARDKCGNTPLHISVGYCKDYDILKLLLEHG----VDVNAKSYILGLTALHSS--IKSERKLKLLLEYG-ADINSLNSYKL  301 (477)
T ss_pred             CCCCCCCCHHHHHHHhcCCHHHHHHHHHcC----CCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCC-CCCCCcCCCCC
Confidence            4589999999999976 6899999999998    88888886 799999999  57889999999999 99999999999


Q ss_pred             CHHHHHHHh
Q 039828          360 TAYDIAEQQ  368 (626)
Q Consensus       360 tpl~la~~~  368 (626)
                      ||+++|...
T Consensus       302 TpL~~A~~~  310 (477)
T PHA02878        302 TPLSSAVKQ  310 (477)
T ss_pred             CHHHHHHHH
Confidence            999999875

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=2.2e-37  Score=342.13  Aligned_cols=354  Identities=26%  Similarity=0.291  Sum_probs=261.1

Q ss_pred             ccccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccch
Q 039828            5 FKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQI   84 (626)
Q Consensus         5 ~~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   84 (626)
                      .....|..|-||||.|+..|+   .+  ++++++.++.. .+..+..|+||||.||+.+..|++++|++.|+++......
T Consensus       234 dv~a~d~~gl~~lh~a~~~g~---~~--i~~~l~~~ga~-~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~  307 (1143)
T KOG4177|consen  234 DVSAKDESGLTPLHVAAFMGH---LD--IVKLLLQHGAS-VNVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAKARD  307 (1143)
T ss_pred             cCCcccccCccHHHHHHhccc---hh--HHHHHHhcccc-cCcccccccCcchhhhccchhhhHhhhhccCccccccccc
Confidence            346789999999999999999   88  99999999887 8889999999999999999999999999999877422111


Q ss_pred             h---------------------hhHHHHhhccCCCCHHHHHHHhhhhh--------hccCCCCCCCCCC--------cHH
Q 039828           85 D---------------------VKFLMEMKNVRGNTALHEALNALQDA--------KKDKNKPKEDGVT--------SLD  127 (626)
Q Consensus        85 ~---------------------~~~~l~~~~~~g~T~Lh~A~~~~~~~--------~~~~~~~~~~~~~--------~~~  127 (626)
                      +                     .....+..+..|.||||+++...+..        ...+....+.+.+        ...
T Consensus       308 ~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~  387 (1143)
T KOG4177|consen  308 DQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRV  387 (1143)
T ss_pred             ccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCch
Confidence            0                     11122456667778888877621111        0011111111111        115


Q ss_pred             HHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhC-CHHHHHHHHhcC
Q 039828          128 SLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQ-KLGLLKMMHDKQ  206 (626)
Q Consensus       128 ~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~~  206 (626)
                      +++++++.++.+.+ ..++.|.||||.|+..++.++++.+++.++.  ....+..|+|++|.|+..| ..+....+++.+
T Consensus       388 ~~v~Lll~~ga~~~-~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~--~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g  464 (1143)
T KOG4177|consen  388 SVVELLLEAGADPN-SAGKNGVTPLHVAAHYGNPRVVKLLLKRGAS--PNAKAKLGYTPLHVAAKKGRYLQIARLLLQYG  464 (1143)
T ss_pred             hHHHhhhhccCCcc-cCCCCCcceeeehhhccCcceEEEEeccCCC--hhhHhhcCCChhhhhhhcccHhhhhhhHhhcC
Confidence            56666666666643 5566666666666666666666666665552  2333445677777777776 455555555554


Q ss_pred             CccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCC
Q 039828          207 PALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNK  286 (626)
Q Consensus       207 ~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~  286 (626)
                       ..++..-..|.||||.|+..|+.++++.+++.++. .+...+.+.+++|.|...+.+.+++.++++|.   .++.++..
T Consensus       465 -~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~-~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga---~v~~~~~r  539 (1143)
T KOG4177|consen  465 -ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAN-DNLDAKKGLTPLHLAADEDTVKVAKILLEHGA---NVDLRTGR  539 (1143)
T ss_pred             -CCcchhccccCcchhhhhccCCchHHHHhhhcCCc-cCccchhccchhhhhhhhhhHHHHHHHhhcCC---ceehhccc
Confidence             66666677777777777777777777777776644 45556667777777777777777777777663   33556889


Q ss_pred             CchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHH
Q 039828          287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAE  366 (626)
Q Consensus       287 g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~  366 (626)
                      |.||||.||.+|+.++|++|+++|    ++++.+|+.|+||||.||..|+.+++++|+++| +++|..|.+|.|||++|.
T Consensus       540 ~~TpLh~A~~~g~v~~VkfLLe~g----Adv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G-A~vna~d~~g~TpL~iA~  614 (1143)
T KOG4177|consen  540 GYTPLHVAVHYGNVDLVKFLLEHG----ADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHG-ASVNAADLDGFTPLHIAV  614 (1143)
T ss_pred             ccchHHHHHhcCCchHHHHhhhCC----ccccccCCCCCChhhHHHHcChHHHHHHHHHcC-CCCCcccccCcchhHHHH
Confidence            999999999999999999999999    999999999999999999999999999999999 999999999999999999


Q ss_pred             Hhccccccccc
Q 039828          367 QQYAKIIPEFS  377 (626)
Q Consensus       367 ~~~~~~i~~~~  377 (626)
                      ..++..+++.+
T Consensus       615 ~lg~~~~~k~l  625 (1143)
T KOG4177|consen  615 RLGYLSVVKLL  625 (1143)
T ss_pred             HhcccchhhHH
Confidence            99998888764

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.5e-36  Score=323.10  Aligned_cols=306  Identities=18%  Similarity=0.145  Sum_probs=250.2

Q ss_pred             cccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchh
Q 039828            6 KTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQID   85 (626)
Q Consensus         6 ~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   85 (626)
                      .+.....+.||||+|+..|+   .+  +|++|++.+.+ ++.+|..|.||||+||..|+.++++.|++.+...       
T Consensus        30 ~~~~~~~~~tPLh~A~~~g~---~e--~vk~Ll~~gad-vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~-------   96 (477)
T PHA02878         30 STSASLIPFIPLHQAVEARN---LD--VVKSLLTRGHN-VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKC-------   96 (477)
T ss_pred             cCcccccCcchHHHHHHcCC---HH--HHHHHHHCCCC-CCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcc-------
Confidence            34455678999999999999   88  99999999876 8999999999999999999999999999876532       


Q ss_pred             hhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHc--CCHHH
Q 039828           86 VKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVES--KNEDI  163 (626)
Q Consensus        86 ~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~--g~~~~  163 (626)
                             ....+.+|++.|+.       .++          .++++.|+..+.+.....+   ...+......  .+.++
T Consensus        97 -------~~~~~~~~l~~a~~-------~~~----------~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~i  149 (477)
T PHA02878         97 -------SVFYTLVAIKDAFN-------NRN----------VEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEI  149 (477)
T ss_pred             -------ccccchhhHHHHHH-------cCC----------HHHHHHHHhCcccCcccCc---HHHHhhccchhhHHHHH
Confidence                   12467899999999       899          9999999987543321111   1111111112  23469


Q ss_pred             HHHHHHhCCCCCccccccC-CCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCC
Q 039828          164 LEYILEALPVNDDCDAKLE-GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD  242 (626)
Q Consensus       164 v~~Ll~~~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (626)
                      +++|++.+++  ....+.. |.||||.|+..|+.++++.|++.+ .+++..|..|.||||+|+..|+.+++++|++.+++
T Consensus       150 v~~Ll~~gad--in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~g-ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~  226 (477)
T PHA02878        150 TKLLLSYGAD--INMKDRHKGNTALHYATENKDQRLTELLLSYG-ANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS  226 (477)
T ss_pred             HHHHHHcCCC--CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            9999999884  4445556 999999999999999999999998 77889999999999999999999999999999998


Q ss_pred             cccccCCCCChHHHHHHhc-CChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCC
Q 039828          243 SVLQKNEEGLYPFHLASAN-GCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMD  321 (626)
Q Consensus       243 ~~~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d  321 (626)
                       ++.+|..|.||||+|+.. ++.+++++|+++|++++..+  +..|+||||+|  .++.+++++|++.|    +++|.+|
T Consensus       227 -in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~--~~~g~TpLh~A--~~~~~~v~~Ll~~g----adin~~d  297 (477)
T PHA02878        227 -TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS--YILGLTALHSS--IKSERKLKLLLEYG----ADINSLN  297 (477)
T ss_pred             -CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccC--CCCCCCHHHHH--ccCHHHHHHHHHCC----CCCCCcC
Confidence             888999999999999975 79999999999887665542  34799999999  46789999999998    8999999


Q ss_pred             CCCCCHHHHHHHhC-CHHHHHHHhhCC----CCcccccccCCCCHHH
Q 039828          322 DDGNTPLHLAALYG-HYFVAVILGKDG----RAESDIINFYGQTAYD  363 (626)
Q Consensus       322 ~~G~TpLhlA~~~~-~~~iv~~Ll~~g----~~d~~~~n~~g~tpl~  363 (626)
                      .+|+||||+|+..+ ..++++.|+...    ..+++.+|..|..+-.
T Consensus       298 ~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~n~  344 (477)
T PHA02878        298 SYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFIDNM  344 (477)
T ss_pred             CCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHHHHHHH
Confidence            99999999999864 456777776542    2567777777776543

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.1e-35  Score=312.40  Aligned_cols=330  Identities=13%  Similarity=0.076  Sum_probs=259.6

Q ss_pred             cccccCCCCcHHHHHHhcC--CCccccHHHHHHHHhhCcc-cccccccCCCcHHHHHHH--cCCHHHHHHHHH-ccccCC
Q 039828            6 KTITSPSGNTLLHIAAAGS--IRNHENMAMATTLARKYPF-LITMQNSKGDTPLHVAAR--DGMLQTAKILVD-CAKRMT   79 (626)
Q Consensus         6 ~~~~~~~g~t~LH~Aa~~g--~~~~~~~~~v~~Ll~~~~~-~l~~~d~~G~TpLh~Aa~--~g~~~iv~~Ll~-~~~~~~   79 (626)
                      .+.+|.+|+||||+|+..+  +   .+  ++++|++.+.. ..+..+..+++|||.++.  +++.++|++|++ .+.+++
T Consensus        70 in~kD~~G~TPLh~Aa~~~~~~---~e--Iv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~  144 (672)
T PHA02730         70 RLCRNNEGLTPLGVYSKRKYVK---SQ--IVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPS  144 (672)
T ss_pred             CcccCCCCCChHHHHHHcCCCc---HH--HHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChh
Confidence            4678999999999999977  5   67  99999998642 256678889999999998  899999999997 444442


Q ss_pred             CccchhhhHHHHhhc-cCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCccc------ccCCCCC-cH
Q 039828           80 SSSQIDVKFLMEMKN-VRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASY------LMNVDCK-SP  151 (626)
Q Consensus        80 ~~~~~~~~~~l~~~~-~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~------~~~~~g~-tp  151 (626)
                      .        ..+..+ ..|.+|++++..       +++          .+++++|+++|+++..      ..+..+. |.
T Consensus       145 ~--------~~~~~~~~~~~~~~yl~~~-------~~~----------~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~  199 (672)
T PHA02730        145 K--------NTNYYIHCLGLVDIYVTTP-------NPR----------PEVLLWLLKSECYSTGYVFRSCMYDSDRCKNS  199 (672)
T ss_pred             h--------hhhhhccccchhhhhHhcC-------CCc----------hHHHHHHHHcCCcccccccccccccCCccchh
Confidence            1        112222 379999999999       999          9999999999999841      1233344 44


Q ss_pred             HHHH------HHcCCHHHHHHHHHhCCCCCccccccCCCCHHHH--HHHhCCHHHHHHHHh-------------------
Q 039828          152 LYLA------VESKNEDILEYILEALPVNDDCDAKLEGKSPVKV--AIELQKLGLLKMMHD-------------------  204 (626)
Q Consensus       152 L~~A------~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~--A~~~g~~~~v~~Ll~-------------------  204 (626)
                      ||+.      ..+++.+++++|+++|+  +....+..|.||||.  +...++.|++++|++                   
T Consensus       200 l~~~il~~~~~~~n~~eiv~lLIs~Ga--dIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~  277 (672)
T PHA02730        200 LHYYILSHRESESLSKDVIKCLIDNNV--SIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGV  277 (672)
T ss_pred             HHHHHHhhhhhhccCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhh
Confidence            4533      45678999999999998  556677789999995  555677999999999                   


Q ss_pred             -------------cCCccccc--------------------cCCCCCc---------------------hhhHHhhCC--
Q 039828          205 -------------KQPALLLI--------------------QDEQMNT---------------------PMHWAASVD--  228 (626)
Q Consensus       205 -------------~~~~~~~~--------------------~d~~g~t---------------------pLh~Aa~~g--  228 (626)
                                   .+ .+...                    .|..|.+                     .||.-.+.+  
T Consensus       278 ~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~  356 (672)
T PHA02730        278 LADYLNKRFRVTPYN-VDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDM  356 (672)
T ss_pred             HHHhhhhhhhcccCC-cchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCc
Confidence                         23 33333                    4556654                     566666655  


Q ss_pred             -CHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCC----hHHHHHHHhccCCCCCcccccCCCchHHHH---HHHcC--
Q 039828          229 -HLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGC----VPVMGEFLEKENMPHPNELFNNKGQNILHV---AAKKG--  298 (626)
Q Consensus       229 -~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~---A~~~~--  298 (626)
                       +.+++++|+++|++ ++.. ..|.||||.|+..++    .+++++|+++|+.. .++.+|..|+||||.   |...+  
T Consensus       357 v~ieIvelLIs~GAd-IN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~-dIN~kd~~G~T~Lh~~i~a~~~n~~  433 (672)
T PHA02730        357 VSIPILRCMLDNGAT-MDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHM-AINHVSNNGRLCMYGLILSRFNNCG  433 (672)
T ss_pred             CcHHHHHHHHHCCCC-CCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCc-cccccccCCCchHhHHHHHHhcccc
Confidence             69999999999999 6664 799999999998875    89999999987532 235568899999994   33332  


Q ss_pred             -------ChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccccccc-CCCCHHHHHHHh--
Q 039828          299 -------RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINF-YGQTAYDIAEQQ--  368 (626)
Q Consensus       299 -------~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~-~g~tpl~la~~~--  368 (626)
                             ..+++++|+.+|    +++|.+|..|+||||+|+..++.+++++|+++| ++++.+|. .|.||++.|...  
T Consensus       434 ~~~~e~~~~~ivk~LIs~G----ADINakD~~G~TPLh~Aa~~~~~eive~LI~~G-AdIN~~d~~~g~TaL~~Aa~~~~  508 (672)
T PHA02730        434 YHCYETILIDVFDILSKYM----DDIDMIDNENKTLLYYAVDVNNIQFARRLLEYG-ASVNTTSRSIINTAIQKSSYRRE  508 (672)
T ss_pred             ccccchhHHHHHHHHHhcc----cchhccCCCCCCHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCcCCcCHHHHHHHhhc
Confidence                   235699999998    899999999999999999999999999999999 99999997 599999999874  


Q ss_pred             cccccccc
Q 039828          369 YAKIIPEF  376 (626)
Q Consensus       369 ~~~~i~~~  376 (626)
                      ++.+++++
T Consensus       509 ~~~eIv~~  516 (672)
T PHA02730        509 NKTKLVDL  516 (672)
T ss_pred             CcHHHHHH
Confidence            44455544

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-35  Score=321.06  Aligned_cols=264  Identities=22%  Similarity=0.274  Sum_probs=242.1

Q ss_pred             ccccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHH-----HHHcCCHHHHHHHHHccccCC
Q 039828            5 FKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHV-----AARDGMLQTAKILVDCAKRMT   79 (626)
Q Consensus         5 ~~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~-----Aa~~g~~~iv~~Ll~~~~~~~   79 (626)
                      +.+..+..+.||||.|+..|+   .+  ++++|++.|.+ ++..+..|.||||+     |+..|+.+++++|++.|+++ 
T Consensus        27 ~~~~~~~~~~t~L~~A~~~~~---~~--ivk~Ll~~g~~-~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-   99 (480)
T PHA03100         27 LNDYSYKKPVLPLYLAKEARN---ID--VVKILLDNGAD-INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-   99 (480)
T ss_pred             cchhhhcccchhhhhhhccCC---HH--HHHHHHHcCCC-CCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-
Confidence            445667889999999999999   88  99999999876 88899999999999     99999999999999999876 


Q ss_pred             CccchhhhHHHHhhccCCCCHHHHHH--HhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHH
Q 039828           80 SSSQIDVKFLMEMKNVRGNTALHEAL--NALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVE  157 (626)
Q Consensus        80 ~~~~~~~~~~l~~~~~~g~T~Lh~A~--~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~  157 (626)
                                 +..|..|.||||+|+  .       .++          .++++.|+++++++. ..+..|.||||+|+.
T Consensus       100 -----------~~~d~~g~tpL~~A~~~~-------~~~----------~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~  150 (480)
T PHA03100        100 -----------NAPDNNGITPLLYAISKK-------SNS----------YSIVEYLLDNGANVN-IKNSDGENLLHLYLE  150 (480)
T ss_pred             -----------CCCCCCCCchhhHHHhcc-------cCh----------HHHHHHHHHcCCCCC-ccCCCCCcHHHHHHH
Confidence                       347889999999999  7       888          999999999999987 788999999999999


Q ss_pred             cC--CHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCC------CchhhHHhhCCC
Q 039828          158 SK--NEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQM------NTPMHWAASVDH  229 (626)
Q Consensus       158 ~g--~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g------~tpLh~Aa~~g~  229 (626)
                      .|  +.+++++|+++++..  ...+..|.||||.|+..|+.+++++|++.+ .+++..+..|      .||||.|+..|+
T Consensus       151 ~~~~~~~iv~~Ll~~g~di--n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~~~~~t~l~~a~~~~~  227 (480)
T PHA03100        151 SNKIDLKILKLLIDKGVDI--NAKNRYGYTPLHIAVEKGNIDVIKFLLDNG-ADINAGDIETLLFTIFETPLHIAACYNE  227 (480)
T ss_pred             cCCChHHHHHHHHHCCCCc--ccccCCCCCHHHHHHHhCCHHHHHHHHHcC-CCccCCCCCCCcHHHHHhHHHHHHHhCc
Confidence            99  999999999998844  444558999999999999999999999998 6778888888      899999999999


Q ss_pred             --HHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHH
Q 039828          230 --LEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL  307 (626)
Q Consensus       230 --~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll  307 (626)
                        .+++++|++.|.+ ++.+|..|.||||.|+..|+.+++++|+++|++++   .+|..|+||||+|+.+++.+++++|+
T Consensus       228 ~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n---~~d~~g~tpl~~A~~~~~~~iv~~Ll  303 (480)
T PHA03100        228 ITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPN---LVNKYGDTPLHIAILNNNKEIFKLLL  303 (480)
T ss_pred             CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---ccCCCCCcHHHHHHHhCCHHHHHHHH
Confidence              9999999999988 88899999999999999999999999999887554   45899999999999999999999999


Q ss_pred             HcCC
Q 039828          308 EASD  311 (626)
Q Consensus       308 ~~~~  311 (626)
                      +.|+
T Consensus       304 ~~g~  307 (480)
T PHA03100        304 NNGP  307 (480)
T ss_pred             hcCC
Confidence            9983

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-33  Score=305.84  Aligned_cols=293  Identities=17%  Similarity=0.122  Sum_probs=238.9

Q ss_pred             cHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHc--CCHHHHHHHHHccccCCCccchhhhHHHHh
Q 039828           15 TLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARD--GMLQTAKILVDCAKRMTSSSQIDVKFLMEM   92 (626)
Q Consensus        15 t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~--g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~   92 (626)
                      .+||--+........+  ++++|++.|.+ ++.+ ..|.||||.++..  ++.++|++|+++|++++.            
T Consensus         2 ~~l~~y~~~~~~~~~~--~v~~LL~~Gad-vN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~------------   65 (494)
T PHA02989          2 SSLYEYILYSDTVDKN--ALEFLLRTGFD-VNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNY------------   65 (494)
T ss_pred             cHHHHHHHcCCcCcHH--HHHHHHHcCCC-cccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccC------------
Confidence            3566666544322255  99999999886 7777 6799999876554  378999999999998742            


Q ss_pred             hccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHc---CCHHHHHHHHH
Q 039828           93 KNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVES---KNEDILEYILE  169 (626)
Q Consensus        93 ~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~  169 (626)
                      ++ .+.||||.|+.       .+....    ....++++.|+++|++++ .+|..|.||||.|+..   |+.+++++|++
T Consensus        66 ~~-~~~tpL~~a~~-------~~~~~~----~~~~~iv~~Ll~~Gadin-~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~  132 (494)
T PHA02989         66 KG-YIETPLCAVLR-------NREITS----NKIKKIVKLLLKFGADIN-LKTFNGVSPIVCFIYNSNINNCDMLRFLLS  132 (494)
T ss_pred             CC-CCCCcHHHHHh-------ccCcch----hhHHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHhcccCcHHHHHHHHH
Confidence            33 57899999876       332110    112789999999999998 7899999999988765   68999999999


Q ss_pred             hCCCCCccccccCCCCHHHHHHHh--CCHHHHHHHHhcCCccccc-cCCCCCchhhHHhhC----CCHHHHHHhhhcCCC
Q 039828          170 ALPVNDDCDAKLEGKSPVKVAIEL--QKLGLLKMMHDKQPALLLI-QDEQMNTPMHWAASV----DHLEGVRFLYEINPD  242 (626)
Q Consensus       170 ~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~-~d~~g~tpLh~Aa~~----g~~~~v~~Ll~~~~~  242 (626)
                      +|++.+ ...+..|.||||.|+..  ++.++++.|++.| .+++. .+..|.||||+|+..    ++.+++++|++.|++
T Consensus       133 ~Gadin-~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~G-adi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~  210 (494)
T PHA02989        133 KGINVN-DVKNSRGYNLLHMYLESFSVKKDVIKILLSFG-VNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN  210 (494)
T ss_pred             CCCCcc-cccCCCCCCHHHHHHHhccCCHHHHHHHHHcC-CCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC
Confidence            988431 34566899999998765  5899999999999 55555 678999999999765    489999999999998


Q ss_pred             cccccCCCCChHHHHHHhc------CChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhh
Q 039828          243 SVLQKNEEGLYPFHLASAN------GCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKL  316 (626)
Q Consensus       243 ~~~~~d~~g~tpLh~A~~~------g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~  316 (626)
                       ++..|..+.+|+|.++..      +..+++++|+. +.   .++.+|..|+||||+|+..++.+++++|++.|    ++
T Consensus       211 -vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~a---dvn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~G----ad  281 (494)
T PHA02989        211 -IETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YI---KINKKDKKGFNPLLISAKVDNYEAFNYLLKLG----DD  281 (494)
T ss_pred             -ccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CC---CCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcC----CC
Confidence             778888899999987654      35677777665 33   45567899999999999999999999999998    89


Q ss_pred             cccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828          317 INEMDDDGNTPLHLAALYGHYFVAVILGKDG  347 (626)
Q Consensus       317 in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g  347 (626)
                      +|.+|..|+||||+|+..++.++++.|++.+
T Consensus       282 in~~d~~G~TpL~~A~~~~~~~iv~~LL~~~  312 (494)
T PHA02989        282 IYNVSKDGDTVLTYAIKHGNIDMLNRILQLK  312 (494)
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999999999999999999876

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.1e-35  Score=328.58  Aligned_cols=333  Identities=25%  Similarity=0.326  Sum_probs=256.7

Q ss_pred             ccccccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCcc
Q 039828            3 ETFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSS   82 (626)
Q Consensus         3 e~~~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~   82 (626)
                      ..-.+..+.+|.||||.||..+.   .+  +++.++.++.+ +...|..|-||||.|+..|+.+++.+|+.+++.+    
T Consensus       199 ~~~~~a~~~~~~tpl~~a~~~nr---i~--~~eLll~~gad-v~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~----  268 (1143)
T KOG4177|consen  199 KADPNASALNGFTPLHIACKKNR---IK--VVELLLKHGAD-VSAKDESGLTPLHVAAFMGHLDIVKLLLQHGASV----  268 (1143)
T ss_pred             cCCccccccCCCCchhhhccccc---cc--eeeeeeeccCc-CCcccccCccHHHHHHhccchhHHHHHHhccccc----
Confidence            34457788999999999999998   88  88888888776 9999999999999999999999999999999876    


Q ss_pred             chhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHH
Q 039828           83 QIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNED  162 (626)
Q Consensus        83 ~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~  162 (626)
                              +..+..|.||+|+|++       .+.          .++.++|++++.++. ..+....||+|+|...|..+
T Consensus       269 --------~~~~vr~~tplh~AA~-------~~~----------~e~~~~ll~~ga~~~-~~~~~~kt~l~~a~~~g~~~  322 (1143)
T KOG4177|consen  269 --------NVSTVRGETPLHMAAR-------AGQ----------VEVCKLLLQNGADVL-AKARDDQTPLHIASRLGHEE  322 (1143)
T ss_pred             --------CcccccccCcchhhhc-------cch----------hhhHhhhhccCcccc-cccccccChhhhhcccchHH
Confidence                    3478889999999987       555          566666666655554 44444445555544444444


Q ss_pred             HHHHHHHhCCCC-------------------------------CccccccCCCCHHHHHHHhCCHHHHHHHHhcCCcccc
Q 039828          163 ILEYILEALPVN-------------------------------DDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLL  211 (626)
Q Consensus       163 ~v~~Ll~~~~~~-------------------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~  211 (626)
                      +++.+++.++..                               ........+.+|+|.|+..|..+.++.++..+ ..++
T Consensus       323 i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~g-a~~~  401 (1143)
T KOG4177|consen  323 IVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAG-ADPN  401 (1143)
T ss_pred             HHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhcc-CCcc
Confidence            444444433211                               12223345778888888888888888888887 5577


Q ss_pred             ccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcC-ChHHHHHHHhccCCCCCcccccCCCchH
Q 039828          212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG-CVPVMGEFLEKENMPHPNELFNNKGQNI  290 (626)
Q Consensus       212 ~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~~~~v~~Ll~~g~~~~~~~~~d~~g~t~  290 (626)
                      ..+..|.||||.++..++.++++.+++.+++ .+..+..|.||+|.|+..| ..++...+++.|.+++.   ....|.||
T Consensus       402 ~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~-~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~---~s~~G~T~  477 (1143)
T KOG4177|consen  402 SAGKNGVTPLHVAAHYGNPRVVKLLLKRGAS-PNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNA---VSKQGFTP  477 (1143)
T ss_pred             cCCCCCcceeeehhhccCcceEEEEeccCCC-hhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcch---hccccCcc
Confidence            7788888888888888888888888887777 7777778888888888888 77777777776654443   36778888


Q ss_pred             HHHHHHcCChHHHHHHHHcCCc-----------------------------chhhcccCCCCCCCHHHHHHHhCCHHHHH
Q 039828          291 LHVAAKKGRDVSVTHILEASDL-----------------------------TDKLINEMDDDGNTPLHLAALYGHYFVAV  341 (626)
Q Consensus       291 Lh~A~~~~~~~i~~~Ll~~~~~-----------------------------~~~~in~~d~~G~TpLhlA~~~~~~~iv~  341 (626)
                      ||+|+..|+.++++.+++.+..                             .++.++.++..|+||||.|+..|+.++|+
T Consensus       478 Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~Vk  557 (1143)
T KOG4177|consen  478 LHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVK  557 (1143)
T ss_pred             hhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHH
Confidence            8888888888777777764310                             12557888899999999999999999999


Q ss_pred             HHhhCCCCcccccccCCCCHHHHHHHhccccccccc
Q 039828          342 ILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFS  377 (626)
Q Consensus       342 ~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~~  377 (626)
                      +|+++| +|++++++.|+||||.|+.+|+.++.+++
T Consensus       558 fLLe~g-Adv~ak~~~G~TPLH~Aa~~G~~~i~~LL  592 (1143)
T KOG4177|consen  558 FLLEHG-ADVNAKDKLGYTPLHQAAQQGHNDIAELL  592 (1143)
T ss_pred             HhhhCC-ccccccCCCCCChhhHHHHcChHHHHHHH
Confidence            999999 99999999999999999999988777763

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.4e-33  Score=306.91  Aligned_cols=328  Identities=16%  Similarity=0.088  Sum_probs=241.9

Q ss_pred             HHHHHHHhhCcccccccccCCCcHHHHHHHc---CCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhh
Q 039828           32 AMATTLARKYPFLITMQNSKGDTPLHVAARD---GMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNAL  108 (626)
Q Consensus        32 ~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~  108 (626)
                      +.++.|+.++.. ++.+|.+|+||||+||..   |+.++|++|++.|+++.            .++..|.||||+|+..-
T Consensus        13 ~~~~~l~~~~~~-~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~------------~~~~~g~TpL~~Aa~~g   79 (661)
T PHA02917         13 DELKQMLRDRDP-NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPL------------HKNWRQLTPLEEYTNSR   79 (661)
T ss_pred             HHHHHHHhccCc-ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCcc------------ccCCCCCCHHHHHHHcC
Confidence            378888876554 678899999999998666   88999999999998763            48889999999998721


Q ss_pred             h------------hhhccCCCCCC------CCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHH--HcCCHHHHHHHH
Q 039828          109 Q------------DAKKDKNKPKE------DGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAV--ESKNEDILEYIL  168 (626)
Q Consensus       109 ~------------~~~~~~~~~~~------~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll  168 (626)
                      .            ......+....      .....-.+++++|+++|++++ ..|.+|.||||.++  ..|+.+++++|+
T Consensus        80 ~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin-~~d~~g~T~L~~~~a~~~~~~eivklLi  158 (661)
T PHA02917         80 HVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLS-VKCENHRSVIENYVMTDDPVPEIIDLFI  158 (661)
T ss_pred             ChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCC-ccCCCCccHHHHHHHccCCCHHHHHHHH
Confidence            1            10000000000      000012699999999999998 78899999999654  578999999999


Q ss_pred             HhCCCCCccc-cccCC-----------CCHHHHHHH-----------hCCHHHHHHHHhcCCccccccCCCCCchhhHHh
Q 039828          169 EALPVNDDCD-AKLEG-----------KSPVKVAIE-----------LQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAA  225 (626)
Q Consensus       169 ~~~~~~~~~~-~~~~g-----------~t~L~~A~~-----------~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa  225 (626)
                      ++|+..+..+ .+..|           .||||+|+.           .++.+++++|++.| ++++.+|.+|.||||+|+
T Consensus       159 ~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~G-advn~~d~~G~TpLh~A~  237 (661)
T PHA02917        159 ENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHG-IKPSSIDKNYCTALQYYI  237 (661)
T ss_pred             HcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCC-CCcccCCCCCCcHHHHHH
Confidence            9988554322 22234           599999986           46899999999999 889999999999999999


Q ss_pred             hCCCH--HHHHHhhhcCCCcc---cccCCCCChHHHHHHhc---------CChHHHHHHHhccCCCCCc----ccc----
Q 039828          226 SVDHL--EGVRFLYEINPDSV---LQKNEEGLYPFHLASAN---------GCVPVMGEFLEKENMPHPN----ELF----  283 (626)
Q Consensus       226 ~~g~~--~~v~~Ll~~~~~~~---~~~d~~g~tpLh~A~~~---------g~~~~v~~Ll~~g~~~~~~----~~~----  283 (626)
                      ..|+.  +++++|++ +++..   ...|..|.+|+|+|+.-         .+.++++.|++.|+.....    +..    
T Consensus       238 ~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~  316 (661)
T PHA02917        238 KSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDK  316 (661)
T ss_pred             HcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccch
Confidence            99985  79999975 66532   24667788999999841         2789999999988642110    001    


Q ss_pred             --------cCCCchHHHHHH---HcCC--hHHHHHHHHcCCcc--------------------------hhhcccCCCCC
Q 039828          284 --------NNKGQNILHVAA---KKGR--DVSVTHILEASDLT--------------------------DKLINEMDDDG  324 (626)
Q Consensus       284 --------d~~g~t~Lh~A~---~~~~--~~i~~~Ll~~~~~~--------------------------~~~in~~d~~G  324 (626)
                              +..+.+++|.+.   ..|.  .+++++|++.|+..                          .++++.+|.+|
T Consensus       317 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G  396 (661)
T PHA02917        317 ETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDG  396 (661)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCC
Confidence                    223445555444   3565  45899999887431                          13355667789


Q ss_pred             CCHHHHHHHhC-----------------------CHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccccc
Q 039828          325 NTPLHLAALYG-----------------------HYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF  376 (626)
Q Consensus       325 ~TpLhlA~~~~-----------------------~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~  376 (626)
                      +||||.|++.+                       ..+++++|+++| +|+|.+|..|+||||+|+..++.++.++
T Consensus       397 ~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~G-AdIN~kd~~G~TpLh~Aa~~~~~~~v~~  470 (661)
T PHA02917        397 EIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYL-KDINMIDKRGETLLHKAVRYNKQSLVSL  470 (661)
T ss_pred             CChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCC-CCCCCCCCCCcCHHHHHHHcCCHHHHHH
Confidence            99999987532                       356789999999 9999999999999999998876655544

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.4e-33  Score=276.90  Aligned_cols=231  Identities=16%  Similarity=0.133  Sum_probs=119.9

Q ss_pred             CCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCccc
Q 039828           63 GMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASY  142 (626)
Q Consensus        63 g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~  142 (626)
                      ++.+++++|++++++              .+|.+|.||||+|+.       .++          .++++.|++++++.+.
T Consensus        10 ~~~~~~~~Lis~~a~--------------~~D~~G~TpLh~Aa~-------~g~----------~eiv~~Ll~~ga~~n~   58 (284)
T PHA02791         10 KSKQLKSFLSSKDAF--------------KADVHGHSALYYAIA-------DNN----------VRLVCTLLNAGALKNL   58 (284)
T ss_pred             CHHHHHHHHHhCCCC--------------CCCCCCCcHHHHHHH-------cCC----------HHHHHHHHHCcCCCcC
Confidence            445555555555442              145555555555555       555          5555555555554431


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCC-chh
Q 039828          143 LMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMN-TPM  221 (626)
Q Consensus       143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-tpL  221 (626)
                         .+|+||||+|+..|+.+++++|++.+..  ....+..|.||||+|+..|+.++++.|++.+ .+++.++..|+ |||
T Consensus        59 ---~d~~TpLh~Aa~~g~~eiV~lLL~~Gad--vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~g-adin~~~~~g~~TpL  132 (284)
T PHA02791         59 ---LENEFPLHQAATLEDTKIVKILLFSGMD--DSQFDDKGNTALYYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSF  132 (284)
T ss_pred             ---CCCCCHHHHHHHCCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcCccCCCCCcHHH
Confidence               1345555555555555555555555442  2233344555555555555555555555555 33444444442 555


Q ss_pred             hHHhhCCCHHHHHHhhhcCCCcccccC-CCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchH-HHHHHHcCC
Q 039828          222 HWAASVDHLEGVRFLYEINPDSVLQKN-EEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNI-LHVAAKKGR  299 (626)
Q Consensus       222 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~-Lh~A~~~~~  299 (626)
                      |+|+..|+.+++++|++++++.   .| ..|.||||+|+.+|+.++++.|+++|++++.   +|..|.|| ||+|+.+|+
T Consensus       133 ~~Aa~~g~~eivk~LL~~~~~~---~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~---~d~~g~t~~L~~Aa~~~~  206 (284)
T PHA02791        133 YHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT---NNSLLFIPDIKLAIDNKD  206 (284)
T ss_pred             HHHHHcCCHHHHHHHHhcCCcc---cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCc---ccCCCCChHHHHHHHcCC
Confidence            5555555555555555544321   11 1345555555555555555555555444332   24445544 555555555


Q ss_pred             hHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828          300 DVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG  347 (626)
Q Consensus       300 ~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g  347 (626)
                      .+++++|++.|    +++|.+|.+| |+|      ++.|++++|+++.
T Consensus       207 ~e~v~lLl~~G----a~in~~~~~~-~~l------~~~e~~~~ll~~~  243 (284)
T PHA02791        207 LEMLQALFKYD----INIYSVNLEN-VLL------DDAEIAKMIIEKH  243 (284)
T ss_pred             HHHHHHHHHCC----CCCccCcccC-ccC------CCHHHHHHHHHhh
Confidence            55555555555    5555555532 333      4555555555543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3e-33  Score=276.17  Aligned_cols=219  Identities=20%  Similarity=0.168  Sum_probs=196.2

Q ss_pred             HHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcC
Q 039828          127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQ  206 (626)
Q Consensus       127 ~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  206 (626)
                      .+++++|++++++   ..|.+|+||||+|+..|+.+++++|++.++..+.  .  .+.||||.|+..|+.++++.|++.+
T Consensus        12 ~~~~~~Lis~~a~---~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~--~--d~~TpLh~Aa~~g~~eiV~lLL~~G   84 (284)
T PHA02791         12 KQLKSFLSSKDAF---KADVHGHSALYYAIADNNVRLVCTLLNAGALKNL--L--ENEFPLHQAATLEDTKIVKILLFSG   84 (284)
T ss_pred             HHHHHHHHhCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC--C--CCCCHHHHHHHCCCHHHHHHHHHCC
Confidence            8999999999875   4689999999999999999999999999874332  2  4789999999999999999999988


Q ss_pred             CccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCC-ChHHHHHHhcCChHHHHHHHhccCCCCCccccc-
Q 039828          207 PALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEG-LYPFHLASANGCVPVMGEFLEKENMPHPNELFN-  284 (626)
Q Consensus       207 ~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d-  284 (626)
                       .+++.+|..|+||||+|+..|+.+++++|++++++ .+.++..| .||||+|+..|+.+++++|++++  +...   | 
T Consensus        85 -advn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~--~~~~---d~  157 (284)
T PHA02791         85 -MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI--PSTF---DL  157 (284)
T ss_pred             -CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcCCHHHHHHHHhcC--Cccc---cc
Confidence             77889999999999999999999999999999988 66777777 49999999999999999999954  3222   3 


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCH-HHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHH
Q 039828          285 NKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTP-LHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYD  363 (626)
Q Consensus       285 ~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~Tp-LhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~  363 (626)
                      ..|+||||+|+.+|+.+++++|++.|    +++|.+|..|.|| ||+|+..|+.+++++|+++| ++++.+|.+| +|++
T Consensus       158 ~~g~TpLh~Aa~~g~~eiv~lLL~~g----Ad~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~G-a~in~~~~~~-~~l~  231 (284)
T PHA02791        158 AILLSCIHITIKNGHVDMMILLLDYM----TSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYD-INIYSVNLEN-VLLD  231 (284)
T ss_pred             ccCccHHHHHHHcCCHHHHHHHHHCC----CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC-CCCccCcccC-ccCC
Confidence            35899999999999999999999998    8899999999987 99999999999999999999 9999999954 7775


Q ss_pred             HH
Q 039828          364 IA  365 (626)
Q Consensus       364 la  365 (626)
                      .+
T Consensus       232 ~~  233 (284)
T PHA02791        232 DA  233 (284)
T ss_pred             CH
Confidence            44

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-34  Score=247.20  Aligned_cols=211  Identities=27%  Similarity=0.291  Sum_probs=189.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhC
Q 039828          148 CKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASV  227 (626)
Q Consensus       148 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~  227 (626)
                      +.++.+.+++.....-++.+++..+.......+.+|+||||+|++.|+.+++++|+.+....++.+|..|+||||.|+..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            45677888888888888888887664434445558999999999999999999999876677888999999999999999


Q ss_pred             CCHHHHHHhhhc-CCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHH
Q 039828          228 DHLEGVRFLYEI-NPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHI  306 (626)
Q Consensus       228 g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~L  306 (626)
                      |+.++|+.|+.+ +++ ++..++.|.||||+|+..|..++.++|+++|+.+   +.+|..|+||||-|+.-|..+++++|
T Consensus        83 g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i---~~kD~~~qtplHRAAavGklkvie~L  158 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI---RIKDKQGQTPLHRAAAVGKLKVIEYL  158 (226)
T ss_pred             CcHHHHHHHhcCCCCC-cceecCCCcceehhhhcCChhhHHHHHHhcCCCC---cccccccCchhHHHHhccchhhHHHH
Confidence            999999999999 666 8999999999999999999999999999988544   55699999999999999999999999


Q ss_pred             HHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHh
Q 039828          307 LEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ  368 (626)
Q Consensus       307 l~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~  368 (626)
                      +..+    +.+|.+|..|+||||.|...|+.++..+|+++| +|.+..|++| ||+.++.-.
T Consensus       159 i~~~----a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g-Ad~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  159 ISQG----APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAG-ADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             HhcC----CCCCcccccCccHHHHHHhccCchHHHHHHHhc-cceeeccccC-chHHHHHHH
Confidence            9998    889999999999999998889999999999999 9999999999 999888754

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8e-33  Score=294.24  Aligned_cols=244  Identities=17%  Similarity=0.151  Sum_probs=160.0

Q ss_pred             CCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHh
Q 039828           13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEM   92 (626)
Q Consensus        13 g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~   92 (626)
                      ++++||.|+..|+   .+  ++++|++.+.+ ++.++..|.||||+|+..|+.++|++|+++|+++.            .
T Consensus         2 ~~~~L~~A~~~g~---~~--iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~------------~   63 (413)
T PHA02875          2 DQVALCDAILFGE---LD--IARRLLDIGIN-PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD------------V   63 (413)
T ss_pred             CchHHHHHHHhCC---HH--HHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc------------c
Confidence            4677777777777   77  77777777665 66677777777777777777777777777776442            2


Q ss_pred             hccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 039828           93 KNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALP  172 (626)
Q Consensus        93 ~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  172 (626)
                      .+.++.||||.|+.       .|+          .++++.|++.++......+.+|.||||+|+..|+.+++++|++.|+
T Consensus        64 ~~~~~~t~L~~A~~-------~g~----------~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~ga  126 (413)
T PHA02875         64 KYPDIESELHDAVE-------EGD----------VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGA  126 (413)
T ss_pred             cCCCcccHHHHHHH-------CCC----------HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence            45566777777777       677          7777777777766655555667777777777777777777777665


Q ss_pred             CCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCC-
Q 039828          173 VNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEG-  251 (626)
Q Consensus       173 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g-  251 (626)
                      +.  ...+..|.||||.|+..|+.++++.|++.+ ..++.+|..|.||||+|+..|+.+++++|++.|++ ++..+..| 
T Consensus       127 d~--~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~-~n~~~~~~~  202 (413)
T PHA02875        127 DP--DIPNTDKFSPLHLAVMMGDIKGIELLIDHK-ACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN-IDYFGKNGC  202 (413)
T ss_pred             CC--CCCCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCcCCCCCC
Confidence            32  333445666666666666666666666665 45556666666666666666666666666666666 44444443 


Q ss_pred             ChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHH
Q 039828          252 LYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAA  295 (626)
Q Consensus       252 ~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~  295 (626)
                      .||+|+|+..|+.+++++|+++|++++.....+..+.|+++.++
T Consensus       203 ~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~  246 (413)
T PHA02875        203 VAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMIC  246 (413)
T ss_pred             chHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHH
Confidence            35666666666666666666666655554444555666666554

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.6e-32  Score=295.91  Aligned_cols=274  Identities=17%  Similarity=0.164  Sum_probs=230.0

Q ss_pred             cCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcc
Q 039828           62 DGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNAS  141 (626)
Q Consensus        62 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~  141 (626)
                      ..+.++|++|+++|++++            .. .+|.||||.++..     ..++          .++++.|+++|++++
T Consensus        13 ~~~~~~v~~LL~~GadvN------------~~-~~g~t~l~~~~~~-----~~~~----------~~iv~~Ll~~GAdvn   64 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVN------------EE-YRGNSILLLYLKR-----KDVK----------IKIVKLLIDNGADVN   64 (494)
T ss_pred             cCcHHHHHHHHHcCCCcc------------cc-cCCCCHHHHHHhc-----CCCC----------hHHHHHHHHcCCCcc
Confidence            478999999999999763            24 5699999876651     0235          899999999999998


Q ss_pred             cccCCCCCcHHHHHHHcC------CHHHHHHHHHhCCCCCccccccCCCCHHHHHHHh---CCHHHHHHHHhcCCccc-c
Q 039828          142 YLMNVDCKSPLYLAVESK------NEDILEYILEALPVNDDCDAKLEGKSPVKVAIEL---QKLGLLKMMHDKQPALL-L  211 (626)
Q Consensus       142 ~~~~~~g~tpL~~A~~~g------~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~-~  211 (626)
                       .++ .+.||||.|+.++      +.+++++|+++|++  ....+..|.||||.|+..   ++.+++++|+++| +++ +
T Consensus        65 -~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gad--in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~G-adin~  139 (494)
T PHA02989         65 -YKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGAD--INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKG-INVND  139 (494)
T ss_pred             -CCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCC-CCccc
Confidence             344 5799999998754      46899999999984  445666899999988765   6799999999998 677 7


Q ss_pred             ccCCCCCchhhHHhhC--CCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcC----ChHHHHHHHhccCCCCCcccccC
Q 039828          212 IQDEQMNTPMHWAASV--DHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG----CVPVMGEFLEKENMPHPNELFNN  285 (626)
Q Consensus       212 ~~d~~g~tpLh~Aa~~--g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g----~~~~v~~Ll~~g~~~~~~~~~d~  285 (626)
                      .+|..|.||||+|+..  ++.+++++|+++|++.....+..|.||||.|+..+    +.+++++|+++|++.+.   +|.
T Consensus       140 ~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~---~~~  216 (494)
T PHA02989        140 VKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIET---NNN  216 (494)
T ss_pred             ccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccc---cCC
Confidence            8999999999998754  68999999999999843336889999999998764    89999999999876654   467


Q ss_pred             CCchHHHHHHHcC------ChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCC
Q 039828          286 KGQNILHVAAKKG------RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQ  359 (626)
Q Consensus       286 ~g~t~Lh~A~~~~------~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~  359 (626)
                      .+.|+||.++..+      ..+++++|+. +    +++|.+|..|+||||+|+..++.+++++|++.| +|++.+|..|.
T Consensus       217 ~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~----advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~G-adin~~d~~G~  290 (494)
T PHA02989        217 GSESVLESFLDNNKILSKKEFKVLNFILK-Y----IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLG-DDIYNVSKDGD  290 (494)
T ss_pred             ccccHHHHHHHhchhhcccchHHHHHHHh-C----CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcC-CCccccCCCCC
Confidence            8999999887653      4567777654 4    789999999999999999999999999999999 99999999999


Q ss_pred             CHHHHHHHhccccccccc
Q 039828          360 TAYDIAEQQYAKIIPEFS  377 (626)
Q Consensus       360 tpl~la~~~~~~~i~~~~  377 (626)
                      |||++|...++.++++.+
T Consensus       291 TpL~~A~~~~~~~iv~~L  308 (494)
T PHA02989        291 TVLTYAIKHGNIDMLNRI  308 (494)
T ss_pred             CHHHHHHHcCCHHHHHHH
Confidence            999999999887776653

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=292.53  Aligned_cols=243  Identities=19%  Similarity=0.197  Sum_probs=220.7

Q ss_pred             CCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCc
Q 039828           97 GNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDD  176 (626)
Q Consensus        97 g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  176 (626)
                      .+++||.|++       .|+          .++++.|+++|.+++ ..+.+|.||||+|+..|+.+++++|++.++..+ 
T Consensus         2 ~~~~L~~A~~-------~g~----------~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-   62 (413)
T PHA02875          2 DQVALCDAIL-------FGE----------LDIARRLLDIGINPN-FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD-   62 (413)
T ss_pred             CchHHHHHHH-------hCC----------HHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-
Confidence            5789999999       999          999999999999987 677899999999999999999999999987433 


Q ss_pred             cccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHH
Q 039828          177 CDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFH  256 (626)
Q Consensus       177 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh  256 (626)
                       ..+..+.||||.|+..|+.++++.|++.+....+..+..|.||||+|+..|+.+++++|++.|++ ++..+..|.||||
T Consensus        63 -~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad-~~~~~~~g~tpLh  140 (413)
T PHA02875         63 -VKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD-PDIPNTDKFSPLH  140 (413)
T ss_pred             -ccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCCHHH
Confidence             34457899999999999999999999998666667788899999999999999999999999998 7888999999999


Q ss_pred             HHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCC-CHHHHHHHhC
Q 039828          257 LASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGN-TPLHLAALYG  335 (626)
Q Consensus       257 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~-TpLhlA~~~~  335 (626)
                      +|+..|+.++++.|+++|.++   +.+|..|+||||+|+..|+.+++++|++.|    ++++..+..|. ||+|+|+..+
T Consensus       141 ~A~~~~~~~~v~~Ll~~g~~~---~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~g----a~~n~~~~~~~~t~l~~A~~~~  213 (413)
T PHA02875        141 LAVMMGDIKGIELLIDHKACL---DIEDCCGCTPLIIAMAKGDIAICKMLLDSG----ANIDYFGKNGCVAALCYAIENN  213 (413)
T ss_pred             HHHHcCCHHHHHHHHhcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhCC----CCCCcCCCCCCchHHHHHHHcC
Confidence            999999999999999987654   445899999999999999999999999998    88888888875 8999999999


Q ss_pred             CHHHHHHHhhCCCCccccc---ccCCCCHHHHHHHh
Q 039828          336 HYFVAVILGKDGRAESDII---NFYGQTAYDIAEQQ  368 (626)
Q Consensus       336 ~~~iv~~Ll~~g~~d~~~~---n~~g~tpl~la~~~  368 (626)
                      +.+++++|+++| +|++..   +.++.||++++...
T Consensus       214 ~~~iv~~Ll~~g-ad~n~~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        214 KIDIVRLFIKRG-ADCNIMFMIEGEECTILDMICNM  248 (413)
T ss_pred             CHHHHHHHHHCC-cCcchHhhcCCCchHHHHHHHhh
Confidence            999999999999 999876   67899999998754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5.9e-33  Score=271.95  Aligned_cols=190  Identities=21%  Similarity=0.254  Sum_probs=167.5

Q ss_pred             cCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccc--------cccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCc
Q 039828           10 SPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLI--------TMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSS   81 (626)
Q Consensus        10 ~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l--------~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~   81 (626)
                      +.+|.|||-+||++||   .+  +|++|+++....+        +-.+..|-+||..|+..||.++|+.|+++|++++. 
T Consensus        39 ~~~g~tPL~iaaRnGH---~~--vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~-  112 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGH---AD--VVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVND-  112 (615)
T ss_pred             ccCCCCceeeehhcCc---HH--HHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcccc-
Confidence            4678899999999999   88  9999999643222        23356888999999999999999999999987643 


Q ss_pred             cchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCH
Q 039828           82 SQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNE  161 (626)
Q Consensus        82 ~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  161 (626)
                                 ......|||.-||-       +|+          .+++++|+++++++. +.|..|.|.|++||.+|+.
T Consensus       113 -----------tT~TNStPLraACf-------DG~----------leivKyLvE~gad~~-IanrhGhTcLmIa~ykGh~  163 (615)
T KOG0508|consen  113 -----------TTRTNSTPLRAACF-------DGH----------LEIVKYLVEHGADPE-IANRHGHTCLMIACYKGHV  163 (615)
T ss_pred             -----------ccccCCccHHHHHh-------cch----------hHHHHHHHHcCCCCc-ccccCCCeeEEeeeccCch
Confidence                       44456699999999       999          999999999999998 8999999999999999999


Q ss_pred             HHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhh
Q 039828          162 DILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE  238 (626)
Q Consensus       162 ~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~  238 (626)
                      +++++|++.++  +.+..+..|.|+||.|+..|+.++++.|+.++. .. ..|..|.|||..|+..|+.++|++|++
T Consensus       164 ~I~qyLle~gA--Dvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga-~i-~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  164 DIAQYLLEQGA--DVNAKSYKGNTALHDCAESGSVDIVQLLLKHGA-KI-DVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHHHHHhCC--CcchhcccCchHHHhhhhcccHHHHHHHHhCCc-ee-eecCCCCchHHHHhhhcchHHHHHHhc
Confidence            99999999988  566677789999999999999999999999983 33 357789999999999999999999974

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-32  Score=236.59  Aligned_cols=211  Identities=21%  Similarity=0.252  Sum_probs=184.2

Q ss_pred             CCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 039828           96 RGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDP-NASYLMNVDCKSPLYLAVESKNEDILEYILEALPVN  174 (626)
Q Consensus        96 ~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~-~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  174 (626)
                      .+.++.+.+++       ...          ..-++.+++..+ .++...|.+|+||||+||..|+.+++.+|++. +..
T Consensus         2 e~~~~~~~~~~-------~~~----------~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-~nv   63 (226)
T KOG4412|consen    2 EYASLGKAICE-------NCE----------EFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ-PNV   63 (226)
T ss_pred             CccchHHHHHh-------hch----------HHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhc-CCC
Confidence            35667777776       444          566777777777 56655666999999999999999999999984 333


Q ss_pred             CccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChH
Q 039828          175 DDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYP  254 (626)
Q Consensus       175 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp  254 (626)
                      ...+.+..|.||||.|+..|+.++++.|+.+...+++..+..|.|+||||+.+|+.+++++|+++++. +..+|..|.||
T Consensus        64 ~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtp  142 (226)
T KOG4412|consen   64 KPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTP  142 (226)
T ss_pred             CCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCch
Confidence            44556778999999999999999999999996689999999999999999999999999999999977 89999999999


Q ss_pred             HHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHH
Q 039828          255 FHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAAL  333 (626)
Q Consensus       255 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~  333 (626)
                      ||-|+.-|..+++++|+..|   ...+.+|..|+||||.|...|+.++..+|++.|    ++++..|++| ||+..|+-
T Consensus       143 lHRAAavGklkvie~Li~~~---a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g----Ad~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  143 LHRAAAVGKLKVIEYLISQG---APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAG----ADTDREDKEG-TALRIACN  213 (226)
T ss_pred             hHHHHhccchhhHHHHHhcC---CCCCcccccCccHHHHHHhccCchHHHHHHHhc----cceeeccccC-chHHHHHH
Confidence            99999999999999999976   455667999999999998889999999999998    8899999998 99887764

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=3e-31  Score=287.28  Aligned_cols=298  Identities=13%  Similarity=0.118  Sum_probs=241.3

Q ss_pred             HHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHH--cCCHHHHHHHHHccccCCCccchhhhHHHHhh
Q 039828           16 LLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAAR--DGMLQTAKILVDCAKRMTSSSQIDVKFLMEMK   93 (626)
Q Consensus        16 ~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~--~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~   93 (626)
                      +||--+.....  .+...|+.|++.+.  ++.. .+|.|+++.+..  .++.++|++|+++|++++            .+
T Consensus         5 ~l~~y~~~~~~--~~~~~v~~ll~~~~--~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn------------~~   67 (489)
T PHA02798          5 NLYNYITFSDN--VKLSTVKLLIKSCN--PNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVN------------GL   67 (489)
T ss_pred             hhHHHeeecCc--ccHHHHHHHHhcCC--hhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCC------------CC
Confidence            44544443332  44459999997653  2222 457788774443  458999999999999763            48


Q ss_pred             ccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcC---CHHHHHHHHHh
Q 039828           94 NVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESK---NEDILEYILEA  170 (626)
Q Consensus        94 ~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g---~~~~v~~Ll~~  170 (626)
                      |..|.||||.|+......  .++          .++++.|+++|++++ ..|.+|.||||+|+.++   +.+++++|+++
T Consensus        68 d~~g~TpL~~~~~n~~~~--~~~----------~~iv~~Ll~~GadiN-~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~  134 (489)
T PHA02798         68 DNEYSTPLCTILSNIKDY--KHM----------LDIVKILIENGADIN-KKNSDGETPLYCLLSNGYINNLEILLFMIEN  134 (489)
T ss_pred             CCCCCChHHHHHHhHHhH--HhH----------HHHHHHHHHCCCCCC-CCCCCcCcHHHHHHHcCCcChHHHHHHHHHc
Confidence            899999999998621110  133          899999999999988 78899999999999886   78999999999


Q ss_pred             CCCCCccccccCCCCHHHHHHHhCC---HHHHHHHHhcCCcccccc-CCCCCchhhHHhhC----CCHHHHHHhhhcCCC
Q 039828          171 LPVNDDCDAKLEGKSPVKVAIELQK---LGLLKMMHDKQPALLLIQ-DEQMNTPMHWAASV----DHLEGVRFLYEINPD  242 (626)
Q Consensus       171 ~~~~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~-d~~g~tpLh~Aa~~----g~~~~v~~Ll~~~~~  242 (626)
                      |+  +....+..|.||||.|+..++   .++++.|++.| .+++.. +..|.||||.++..    ++.+++++|+++|++
T Consensus       135 Ga--dvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~g-adin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~  211 (489)
T PHA02798        135 GA--DTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG-VDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI  211 (489)
T ss_pred             CC--CccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhC-CCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC
Confidence            88  445667789999999999988   99999999998 666666 45789999998764    589999999999988


Q ss_pred             cccccCCCCChHHH-------HHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchh
Q 039828          243 SVLQKNEEGLYPFH-------LASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDK  315 (626)
Q Consensus       243 ~~~~~d~~g~tpLh-------~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~  315 (626)
                       ++..+..|.++++       .+...++.+++.+|+. +   ..++.+|..|+||||+|+.+++.+++++|++.|    +
T Consensus       212 -i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~---~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~G----A  282 (489)
T PHA02798        212 -INKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-Y---IDINQVDELGFNPLYYSVSHNNRKIFEYLLQLG----G  282 (489)
T ss_pred             -cccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-c---CCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcC----C
Confidence             7777888888876       2455677888888776 2   345667899999999999999999999999998    8


Q ss_pred             hcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccccccc
Q 039828          316 LINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINF  356 (626)
Q Consensus       316 ~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~  356 (626)
                      ++|.+|..|+||||+|+..++.++++.|++.+ ++++....
T Consensus       283 din~~d~~G~TpL~~A~~~~~~~iv~~lL~~~-~~~~~i~~  322 (489)
T PHA02798        283 DINIITELGNTCLFTAFENESKFIFNSILNKK-PNKNTISY  322 (489)
T ss_pred             cccccCCCCCcHHHHHHHcCcHHHHHHHHccC-CCHHHHHH
Confidence            99999999999999999999999999999998 88775544

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.5e-30  Score=281.74  Aligned_cols=270  Identities=17%  Similarity=0.189  Sum_probs=225.8

Q ss_pred             CHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccc
Q 039828           64 MLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYL  143 (626)
Q Consensus        64 ~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~  143 (626)
                      ..+.|+.|++.+...              ....|.|+++.+...     ..++          .++++.|+++|++++ .
T Consensus        17 ~~~~v~~ll~~~~~~--------------~~~~~~~~~~~yl~~-----~~~~----------~~iv~~Ll~~Gadvn-~   66 (489)
T PHA02798         17 KLSTVKLLIKSCNPN--------------EIVNEYSIFQKYLQR-----DSPS----------TDIVKLFINLGANVN-G   66 (489)
T ss_pred             cHHHHHHHHhcCChh--------------hhcccchHHHHHHhC-----CCCC----------HHHHHHHHHCCCCCC-C
Confidence            477999999865321              124577877755541     1335          899999999999998 7


Q ss_pred             cCCCCCcHHHHHHHc-----CCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhC---CHHHHHHHHhcCCccccccCC
Q 039828          144 MNVDCKSPLYLAVES-----KNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQ---KLGLLKMMHDKQPALLLIQDE  215 (626)
Q Consensus       144 ~~~~g~tpL~~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~d~  215 (626)
                      .+..|.||||.|+.+     ++.+++++|+++|++  ....+..|.||||.|+..+   +.+++++|++.| ++++..|.
T Consensus        67 ~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad--iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~G-advn~~d~  143 (489)
T PHA02798         67 LDNEYSTPLCTILSNIKDYKHMLDIVKILIENGAD--INKKNSDGETPLYCLLSNGYINNLEILLFMIENG-ADTTLLDK  143 (489)
T ss_pred             CCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCC--CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcC-CCccccCC
Confidence            889999999999864     678999999999884  4556678999999999975   789999999998 78899999


Q ss_pred             CCCchhhHHhhCCC---HHHHHHhhhcCCCccccc-CCCCChHHHHHHhc----CChHHHHHHHhccCCCCCcccccCCC
Q 039828          216 QMNTPMHWAASVDH---LEGVRFLYEINPDSVLQK-NEEGLYPFHLASAN----GCVPVMGEFLEKENMPHPNELFNNKG  287 (626)
Q Consensus       216 ~g~tpLh~Aa~~g~---~~~v~~Ll~~~~~~~~~~-d~~g~tpLh~A~~~----g~~~~v~~Ll~~g~~~~~~~~~d~~g  287 (626)
                      .|.||||+|++.++   .+++++|++.|++ ++.. +..|.||||.++..    ++.+++++|+++|+.+..   .+..|
T Consensus       144 ~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad-in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~---~~~~~  219 (489)
T PHA02798        144 DGFTMLQVYLQSNHHIDIEIIKLLLEKGVD-INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINK---ENKSH  219 (489)
T ss_pred             CCCcHHHHHHHcCCcchHHHHHHHHHhCCC-cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCccc---CCccc
Confidence            99999999999988   9999999999998 5544 56799999998764    489999999998866654   46778


Q ss_pred             chHHH-------HHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCC
Q 039828          288 QNILH-------VAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQT  360 (626)
Q Consensus       288 ~t~Lh-------~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~t  360 (626)
                      +++++       .+...+..+++++|+. +    +++|.+|..|+||||+|+..++.+++++|++.| +|++.+|..|+|
T Consensus       220 ~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~----~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~G-Adin~~d~~G~T  293 (489)
T PHA02798        220 KKKFMEYLNSLLYDNKRFKKNILDFIFS-Y----IDINQVDELGFNPLYYSVSHNNRKIFEYLLQLG-GDINIITELGNT  293 (489)
T ss_pred             cchHHHHHHHHHhhcccchHHHHHHHHh-c----CCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcC-CcccccCCCCCc
Confidence            88876       2445567788888765 3    789999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHhcccccccc
Q 039828          361 AYDIAEQQYAKIIPEF  376 (626)
Q Consensus       361 pl~la~~~~~~~i~~~  376 (626)
                      ||++|.+.++..+.+.
T Consensus       294 pL~~A~~~~~~~iv~~  309 (489)
T PHA02798        294 CLFTAFENESKFIFNS  309 (489)
T ss_pred             HHHHHHHcCcHHHHHH
Confidence            9999999887666654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.97  E-value=1e-29  Score=268.79  Aligned_cols=326  Identities=12%  Similarity=0.082  Sum_probs=247.1

Q ss_pred             cccCCCCcHHHHHHh-cCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHH-cCCHHHHHHHHHccccCCCcc---
Q 039828            8 ITSPSGNTLLHIAAA-GSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAAR-DGMLQTAKILVDCAKRMTSSS---   82 (626)
Q Consensus         8 ~~~~~g~t~LH~Aa~-~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~-~g~~~iv~~Ll~~~~~~~~~~---   82 (626)
                      ..+.+|.+++|+-|. .|+   .|  +|++|+++|++ ++.++..|.||||+|+. .|+.|+|++|++.|+++.+..   
T Consensus        66 ~~n~~~~~~~~~~~s~n~~---lE--lvk~LI~~GAd-vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g  139 (631)
T PHA02792         66 YKNINDFDIFEYLCSDNID---IE--LLKLLISKGLE-INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYG  139 (631)
T ss_pred             cCccCCccHHHHHHHhccc---HH--HHHHHHHcCCC-cccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccC
Confidence            456778889998876 456   67  99999999886 88899999999999976 699999999999998753210   


Q ss_pred             ---------------------chhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcc
Q 039828           83 ---------------------QIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNAS  141 (626)
Q Consensus        83 ---------------------~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~  141 (626)
                                           ..++...++..|..|.||||+|+.       +..   +++...-.+++++|+++|+++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~-------~~s---~~~~~~~~~v~k~Li~~g~~~~  209 (631)
T PHA02792        140 YKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYII-------TRS---QDGYATSLDVINYLISHEKEMR  209 (631)
T ss_pred             cchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHh-------hCC---cccccCCHHHHHHHHhCCCCcC
Confidence                                 112345667899999999999998       551   1111111999999999999998


Q ss_pred             cccCCCCCcHHHHHHHcC--CHHHHHHHHHhCCCCCccccccCCCCHHHHHHH--h----C--CHHHHHHHHhcCC-ccc
Q 039828          142 YLMNVDCKSPLYLAVESK--NEDILEYILEALPVNDDCDAKLEGKSPVKVAIE--L----Q--KLGLLKMMHDKQP-ALL  210 (626)
Q Consensus       142 ~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~--~----g--~~~~v~~Ll~~~~-~~~  210 (626)
                       ..|..|.||||+|+.+.  +.++++.|++..-  ..+    .-...|+--..  .    .  +..+|..|++.+. ..+
T Consensus       210 -~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~--~~~----~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i  282 (631)
T PHA02792        210 -YYTYREHTTLYYYVDKCDIKREIFDALFDSNY--SGN----ELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYI  282 (631)
T ss_pred             -ccCCCCChHHHHHHHcccchHHHHHHHHhccc--ccc----chHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccch
Confidence             57888999999999999  8899999998421  111    11222322221  1    1  2347777777652 110


Q ss_pred             ----cccC-------------CCCCchhhHHhhCC--CHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHH
Q 039828          211 ----LIQD-------------EQMNTPMHWAASVD--HLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL  271 (626)
Q Consensus       211 ----~~~d-------------~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  271 (626)
                          ...+             ..-+-.||.-.+.+  +.+++++|++.|++..   ......+++.|+..|+.+++++|+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLI  359 (631)
T PHA02792        283 LELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYIL  359 (631)
T ss_pred             hhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHH
Confidence                0000             11123456655666  7899999999998832   223567799999999999999999


Q ss_pred             hccCCCCCcccccCC--CchHHHHHHHcCChH---HHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhC
Q 039828          272 EKENMPHPNELFNNK--GQNILHVAAKKGRDV---SVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD  346 (626)
Q Consensus       272 ~~g~~~~~~~~~d~~--g~t~Lh~A~~~~~~~---i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~  346 (626)
                      ++|++.+.   +|..  +.||||+|+.....+   ++++|+++|    +++|.+|..|.||||+|+..++.+++++|+++
T Consensus       360 s~GADIN~---kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~G----ADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~  432 (631)
T PHA02792        360 KNGNVVVE---DDDNIINIMPLFPTLSIHESDVLSILKLCKPYI----DDINKIDKHGRSILYYCIESHSVSLVEWLIDN  432 (631)
T ss_pred             HcCCchhh---hcCCCCChhHHHHHHHhccHhHHHHHHHHHhcC----CccccccccCcchHHHHHHcCCHHHHHHHHHC
Confidence            99877644   3555  579999988776544   578889998    89999999999999999999999999999999


Q ss_pred             CCCcccccccCCCCHHHHHHH
Q 039828          347 GRAESDIINFYGQTAYDIAEQ  367 (626)
Q Consensus       347 g~~d~~~~n~~g~tpl~la~~  367 (626)
                      | ++++.+|..|+||+++|..
T Consensus       433 G-ADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        433 G-ADINITTKYGSTCIGICVI  452 (631)
T ss_pred             C-CCCCCcCCCCCCHHHHHHH
Confidence            9 9999999999999999976

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.7e-29  Score=247.83  Aligned_cols=222  Identities=18%  Similarity=0.241  Sum_probs=183.5

Q ss_pred             HHHhcCCCccccHHHHHHHHhh-Ccc---cccccccCCCcHHHHHHHcCCHHHHHHHHH-ccccCCCccchhhhHHHHhh
Q 039828           19 IAAAGSIRNHENMAMATTLARK-YPF---LITMQNSKGDTPLHVAARDGMLQTAKILVD-CAKRMTSSSQIDVKFLMEMK   93 (626)
Q Consensus        19 ~Aa~~g~~~~~~~~~v~~Ll~~-~~~---~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~-~~~~~~~~~~~~~~~~l~~~   93 (626)
                      -|++.|.   ..  ....|+.+ ...   .+--.+.+|.|||-.||++||.++|++|++ .++++.......    ++-.
T Consensus        10 naa~~g~---l~--~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~----FDge   80 (615)
T KOG0508|consen   10 NAARDGK---LQ--LLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVR----FDGE   80 (615)
T ss_pred             HHhhhhh---HH--HHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEE----eCCc
Confidence            4666676   54  44444433 211   122346788999999999999999999999 555554332221    1234


Q ss_pred             ccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Q 039828           94 NVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPV  173 (626)
Q Consensus        94 ~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  173 (626)
                      ..+|.+||..|+.       -||          .++++.|++++++++ .....+-|||--||.-|+.+++++|++++++
T Consensus        81 ~IegappLWaAsa-------AGH----------l~vVk~L~~~ga~VN-~tT~TNStPLraACfDG~leivKyLvE~gad  142 (615)
T KOG0508|consen   81 TIEGAPPLWAASA-------AGH----------LEVVKLLLRRGASVN-DTTRTNSTPLRAACFDGHLEIVKYLVEHGAD  142 (615)
T ss_pred             ccCCCchhhHHhc-------cCc----------HHHHHHHHHhcCccc-cccccCCccHHHHHhcchhHHHHHHHHcCCC
Confidence            6689999999988       899          999999999999988 4455667999999999999999999999884


Q ss_pred             CCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCCh
Q 039828          174 NDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLY  253 (626)
Q Consensus       174 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  253 (626)
                        ....+..|.|.|++|+..|+.+++++|++.+ ++++.++..|+|+||.|++.|+.|+++.|+.+++.  ...|..|.|
T Consensus       143 --~~IanrhGhTcLmIa~ykGh~~I~qyLle~g-ADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~--i~~d~~Gmt  217 (615)
T KOG0508|consen  143 --PEIANRHGHTCLMIACYKGHVDIAQYLLEQG-ADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAK--IDVDGHGMT  217 (615)
T ss_pred             --CcccccCCCeeEEeeeccCchHHHHHHHHhC-CCcchhcccCchHHHhhhhcccHHHHHHHHhCCce--eeecCCCCc
Confidence              4556668999999999999999999999999 89999999999999999999999999999999875  346778999


Q ss_pred             HHHHHHhcCChHHHHHHHh
Q 039828          254 PFHLASANGCVPVMGEFLE  272 (626)
Q Consensus       254 pLh~A~~~g~~~~v~~Ll~  272 (626)
                      ||..|+..|+.++|+.|++
T Consensus       218 PL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  218 PLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hHHHHhhhcchHHHHHHhc
Confidence            9999999999999999995

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=2.1e-29  Score=258.25  Aligned_cols=209  Identities=26%  Similarity=0.341  Sum_probs=189.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHh-CCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccC-CCCCchhhHHh
Q 039828          148 CKSPLYLAVESKNEDILEYILEA-LPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQD-EQMNTPMHWAA  225 (626)
Q Consensus       148 g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~Aa  225 (626)
                      -...++.|++.|..+-++.+++. +.  +.+..|.+|.|+||+|+.+++.+++++|++++ +++|..+ .-+.||||+|+
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~--~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~g-advn~~gG~l~stPLHWAa  120 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGE--SVNNPDREGVTLLHWAAINNRLDVARYLISHG-ADVNAIGGVLGSTPLHWAA  120 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCc--CCCCCCcCCccceeHHHHcCcHHHHHHHHHcC-CCccccCCCCCCCcchHHH
Confidence            35667899999999999999998 54  45566668999999999999999999999999 7788777 77899999999


Q ss_pred             hCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHH
Q 039828          226 SVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTH  305 (626)
Q Consensus       226 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~  305 (626)
                      ++|+..+|.+|+++|++ +..+|.+|.+|+|+|+..|+.-.+-+++.++   ..++.+|.+|+||||+|+.+|....+..
T Consensus       121 r~G~~~vv~lLlqhGAd-pt~~D~~G~~~lHla~~~~~~~~vayll~~~---~d~d~~D~~grTpLmwAaykg~~~~v~~  196 (600)
T KOG0509|consen  121 RNGHISVVDLLLQHGAD-PTLKDKQGLTPLHLAAQFGHTALVAYLLSKG---ADIDLRDNNGRTPLMWAAYKGFALFVRR  196 (600)
T ss_pred             HcCcHHHHHHHHHcCCC-CceecCCCCcHHHHHHHhCchHHHHHHHHhc---ccCCCcCCCCCCHHHHHHHhcccHHHHH
Confidence            99999999999999999 8899999999999999999999999999987   4556679999999999999999888999


Q ss_pred             HHHcCCcchhhcccCC-CCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHh
Q 039828          306 ILEASDLTDKLINEMD-DDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ  368 (626)
Q Consensus       306 Ll~~~~~~~~~in~~d-~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~  368 (626)
                      |++.+    +.++.+| ++|+||||+|+..|+..++. |+..+.++.+..|.+|+||+++|.+.
T Consensus       197 LL~f~----a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  197 LLKFG----ASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHhc----ccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            99998    7788888 99999999999999999999 55555599999999999999999876

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.95  E-value=4e-28  Score=257.31  Aligned_cols=330  Identities=20%  Similarity=0.170  Sum_probs=295.7

Q ss_pred             cccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchh
Q 039828            6 KTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQID   85 (626)
Q Consensus         6 ~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   85 (626)
                      +.....+-+|+|..||+.||   .|  +++.|+.++.+ ++.+|..|.+||.+|+..||..+|+.|+.+.+++.      
T Consensus       750 d~~Te~n~~t~LT~acaggh---~e--~vellv~rgan-iehrdkkgf~plImaatagh~tvV~~llk~ha~ve------  817 (2131)
T KOG4369|consen  750 DPLTEPNIKTNLTSACAGGH---RE--EVELLVVRGAN-IEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVE------  817 (2131)
T ss_pred             ccccCccccccccccccCcc---HH--HHHHHHHhccc-ccccccccchhhhhhcccCchHHHHHHHhhhhhhh------
Confidence            34455678999999999999   88  99999999887 88999999999999999999999999999877542      


Q ss_pred             hhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHH
Q 039828           86 VKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILE  165 (626)
Q Consensus        86 ~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  165 (626)
                           ...|..++|+|.+||.       .+.          .+++++|+..+.+-. .+|....|||.+|...|..+++.
T Consensus       818 -----aQsdrtkdt~lSlacs-------ggr----------~~vvelLl~~ganke-hrnvsDytPlsla~Sggy~~iI~  874 (2131)
T KOG4369|consen  818 -----AQSDRTKDTMLSLACS-------GGR----------TRVVELLLNAGANKE-HRNVSDYTPLSLARSGGYTKIIH  874 (2131)
T ss_pred             -----hhcccccCceEEEecC-------CCc----------chHHHHHHHhhcccc-ccchhhcCchhhhcCcchHHHHH
Confidence                 2478899999999999       888          999999999999987 78888999999999999999999


Q ss_pred             HHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCccc
Q 039828          166 YILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVL  245 (626)
Q Consensus       166 ~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~  245 (626)
                      .|+..|...+...-...|..||.+|..+||...++.|++.+...-.....+-+|+|-+|+..|+.+++.+||...+. ..
T Consensus       875 ~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~an-ve  953 (2131)
T KOG4369|consen  875 ALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN-VE  953 (2131)
T ss_pred             HHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhh-hh
Confidence            99999986666566678999999999999999999999999444444456778999999999999999999999888 77


Q ss_pred             ccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCC
Q 039828          246 QKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGN  325 (626)
Q Consensus       246 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~  325 (626)
                      .+-+.|.|||+-++..|.+|+=+.|+..|++.+..-. .....|+|-+++..|+.+.+..|+...    +-+..++++|+
T Consensus       954 hRaktgltplme~AsgGyvdvg~~li~~gad~nasPv-p~T~dtalti~a~kGh~kfv~~lln~~----atv~v~NkkG~ 1028 (2131)
T KOG4369|consen  954 HRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPV-PNTWDTALTIPANKGHTKFVPKLLNGD----ATVRVPNKKGC 1028 (2131)
T ss_pred             hhcccCCcccchhhcCCccccchhhhhcccccccCCC-CCcCCccceeecCCCchhhhHHhhCCc----cceecccCCCC
Confidence            8889999999999999999999999999887665433 344569999999999999999999875    77888999999


Q ss_pred             CHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhccccccccc
Q 039828          326 TPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFS  377 (626)
Q Consensus       326 TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~~  377 (626)
                      |+|-+|+.-|+...+.+|++++ +|++..|+.-.+++.-|.+.|+..|+++-
T Consensus      1029 T~Lwla~~Gg~lss~~il~~~~-ad~d~qdnr~~S~~maafRKgh~~iVk~m 1079 (2131)
T KOG4369|consen 1029 TVLWLASAGGALSSCPILVSSV-ADADQQDNRTNSRTMAAFRKGHFAIVKKM 1079 (2131)
T ss_pred             cccchhccCCccccchHHhhcc-cChhhhhcccccccHHHHHhchhheeccc
Confidence            9999999999999999999999 99999999999999999999999988763

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.95  E-value=6.3e-27  Score=240.09  Aligned_cols=210  Identities=20%  Similarity=0.239  Sum_probs=186.9

Q ss_pred             CCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcC-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCc
Q 039828           98 NTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSE-DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDD  176 (626)
Q Consensus        98 ~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  176 (626)
                      .+.++.|++       .|.          .+-++.+++. +.+++ ..|.+|.|+||+|+.+++.+++++|++++++.+.
T Consensus        45 ~~~~v~A~q-------~G~----------l~~v~~lve~~g~~v~-~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~  106 (600)
T KOG0509|consen   45 LDDIVKATQ-------YGE----------LETVKELVESEGESVN-NPDREGVTLLHWAAINNRLDVARYLISHGADVNA  106 (600)
T ss_pred             hhhhhhHhh-------cch----------HHHHHHHHhhcCcCCC-CCCcCCccceeHHHHcCcHHHHHHHHHcCCCccc
Confidence            456677887       888          9999999998 77776 7888999999999999999999999999986554


Q ss_pred             cccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHH
Q 039828          177 CDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFH  256 (626)
Q Consensus       177 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh  256 (626)
                      ..- .-+.||||+|+++|+..++..|+++| ++++.+|.+|.+|||.|++.|+.-.+-+|+.++.+ ++.+|.+|+||||
T Consensus       107 ~gG-~l~stPLHWAar~G~~~vv~lLlqhG-Adpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLm  183 (600)
T KOG0509|consen  107 IGG-VLGSTPLHWAARNGHISVVDLLLQHG-ADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLM  183 (600)
T ss_pred             cCC-CCCCCcchHHHHcCcHHHHHHHHHcC-CCCceecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHH
Confidence            332 46899999999999999999999999 89999999999999999999999999999999977 9999999999999


Q ss_pred             HHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHh
Q 039828          257 LASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALY  334 (626)
Q Consensus       257 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~  334 (626)
                      +|+.+|+...++.|++-|+.....  .|.+|.||||+|+..|+..++.+|++.+    .+.+.+|.+|.||+.+|...
T Consensus       184 wAaykg~~~~v~~LL~f~a~~~~~--d~~~g~TpLHwa~~~gN~~~v~Ll~~g~----~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  184 WAAYKGFALFVRRLLKFGASLLLT--DDNHGNTPLHWAVVGGNLTAVKLLLEGG----ADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHhcccHHHHHHHHhccccccc--ccccCCchHHHHHhcCCcceEehhhhcC----CcccccccCCCCHHHHHHHh
Confidence            999999999899999866444433  3599999999999999999999666665    77888899999999999877

>PHA02792 ankyrin-like protein; Provisional

Probab=99.94  E-value=7.8e-26  Score=239.51  Aligned_cols=291  Identities=11%  Similarity=0.009  Sum_probs=199.5

Q ss_pred             cccccCCCcHHHH-HHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCC
Q 039828           46 TMQNSKGDTPLHV-AARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVT  124 (626)
Q Consensus        46 ~~~d~~G~TpLh~-Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~  124 (626)
                      +..|.+|.+|+|+ |+.+|+.|+|++|+++|++++            .++..|.||+|+|+..      .++        
T Consensus        65 ~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN------------~~~n~~~~~l~ya~~~------~~~--------  118 (631)
T PHA02792         65 DYKNINDFDIFEYLCSDNIDIELLKLLISKGLEIN------------SIKNGINIVEKYATTS------NPN--------  118 (631)
T ss_pred             CcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcc------------cccCCCCcceeEeecC------CCC--------
Confidence            3456666666664 444566666666666666542            3455566666666431      355        


Q ss_pred             cHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC-CCCccccccCCCCHHHHHHHhC-------CH
Q 039828          125 SLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALP-VNDDCDAKLEGKSPVKVAIELQ-------KL  196 (626)
Q Consensus       125 ~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~g~t~L~~A~~~g-------~~  196 (626)
                        .|++++|+++|++.. ..+..|.|||+.-+.+...--.+.-.+... +......+..|.||||+|+..+       +.
T Consensus       119 --~eivk~Ll~~Gad~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~  195 (631)
T PHA02792        119 --VDVFKLLLDKGIPTC-SNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSL  195 (631)
T ss_pred             --hHHHHHHHHCCCCcc-cccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCH
Confidence              666666666666654 345566666665544322111111111000 0011234566999999999999       89


Q ss_pred             HHHHHHHhcCCccccccCCCCCchhhHHhhCC--CHHHHHHhhhcCCCcccc------------cCCC------------
Q 039828          197 GLLKMMHDKQPALLLIQDEQMNTPMHWAASVD--HLEGVRFLYEINPDSVLQ------------KNEE------------  250 (626)
Q Consensus       197 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~------------~d~~------------  250 (626)
                      ++++.|+.++ +.++..|..|.||||+|+.+.  +.|+++.|++..-+-...            +..+            
T Consensus       196 ~v~k~Li~~g-~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll  274 (631)
T PHA02792        196 DVINYLISHE-KEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLL  274 (631)
T ss_pred             HHHHHHHhCC-CCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHH
Confidence            9999999999 778889999999999999999  899999999853321111            0110            


Q ss_pred             -CC------------------------------hHHHHHHhcC--ChHHHHHHHhccCCCCCcccccCCCchHHHHHHHc
Q 039828          251 -GL------------------------------YPFHLASANG--CVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKK  297 (626)
Q Consensus       251 -g~------------------------------tpLh~A~~~g--~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~  297 (626)
                       |.                              --||.-..++  +.+++++|+++|....     .....+.++.|+..
T Consensus       275 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~-----r~~~~n~~~~Aa~~  349 (631)
T PHA02792        275 SGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY-----RFKHINKYFQKFDN  349 (631)
T ss_pred             hCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc-----cCCcchHHHHHHHc
Confidence             11                              1223333334  6788899999776532     22366789999999


Q ss_pred             CChHHHHHHHHcCCcchhhcccCCCCC--CCHHHHHHHhCCH---HHHHHHhhCCCCcccccccCCCCHHHHHHHhcccc
Q 039828          298 GRDVSVTHILEASDLTDKLINEMDDDG--NTPLHLAALYGHY---FVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKI  372 (626)
Q Consensus       298 ~~~~i~~~Ll~~~~~~~~~in~~d~~G--~TpLhlA~~~~~~---~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~  372 (626)
                      ++.+++++|+++|    +++|.+|.+|  .||||.|+.....   +++++|+++| +|+|.+|..|+||||+|+..++.+
T Consensus       350 gn~eIVelLIs~G----ADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~G-ADIN~kD~~G~TPLh~Aa~~~n~e  424 (631)
T PHA02792        350 RDPKVVEYILKNG----NVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYI-DDINKIDKHGRSILYYCIESHSVS  424 (631)
T ss_pred             CCHHHHHHHHHcC----CchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcC-CccccccccCcchHHHHHHcCCHH
Confidence            9999999999999    8899999875  6999998877654   4688899999 999999999999999999988777


Q ss_pred             cccc
Q 039828          373 IPEF  376 (626)
Q Consensus       373 i~~~  376 (626)
                      +.++
T Consensus       425 ivel  428 (631)
T PHA02792        425 LVEW  428 (631)
T ss_pred             HHHH
Confidence            6665

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.2e-25  Score=214.32  Aligned_cols=174  Identities=17%  Similarity=0.145  Sum_probs=147.3

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCC--CHHHHHHhhhcCCCcccccC-CCCChHHHHH
Q 039828          182 EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVD--HLEGVRFLYEINPDSVLQKN-EEGLYPFHLA  258 (626)
Q Consensus       182 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A  258 (626)
                      .+.||||.|+..|+.++++.|++.    .+..|..|.||||+|+..+  +.+++++|++++++ ++..+ ..|.||||+|
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad-vn~~~~~~g~TpLh~a   94 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD-VNFKTRDNNLSALHHY   94 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC-CCccCCCCCCCHHHHH
Confidence            367888888888888888888764    4557888999999998754  88999999999988 66665 5899999988


Q ss_pred             Hhc---CChHHHHHHHhccCCCCCcccccCCCchHHHHHHHc--CChHHHHHHHHcCCcchhhcccCCCCCCCHHHH-HH
Q 039828          259 SAN---GCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKK--GRDVSVTHILEASDLTDKLINEMDDDGNTPLHL-AA  332 (626)
Q Consensus       259 ~~~---g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~--~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhl-A~  332 (626)
                      +..   ++.+++++|+++|++++   .+|..|+||||+|+.+  ++.+++++|++.|    ++++.+|.+|+||||. |+
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin---~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g----adin~~d~~g~t~Lh~~a~  167 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSIT---EEDEDGKNLLHMYMCNFNVRINVIKLLIDSG----VSFLNKDFDNNNILYSYIL  167 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCC---CcCCCCCCHHHHHHHhccCCHHHHHHHHHcC----CCcccccCCCCcHHHHHHH
Confidence            753   47899999999876654   4588999999998764  6799999999998    8899999999999996 56


Q ss_pred             HhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHh
Q 039828          333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ  368 (626)
Q Consensus       333 ~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~  368 (626)
                      ..++.+++++|++.| ++++.+|..|+||+|+|..+
T Consensus       168 ~~~~~~iv~~Ll~~G-adi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        168 FHSDKKIFDFLTSLG-IDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             hcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhh
Confidence            678999999999999 99999999999999999876

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.9e-24  Score=204.85  Aligned_cols=177  Identities=15%  Similarity=0.165  Sum_probs=154.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhC--CHHHHHHHHhcCCccccccC-CCCCchh
Q 039828          145 NVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQ--KLGLLKMMHDKQPALLLIQD-EQMNTPM  221 (626)
Q Consensus       145 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~d-~~g~tpL  221 (626)
                      ...+.|||+.|+..|+.+.++.|++..     ...+..|.||||.|+..+  +.+++++|++.+ .+++.++ ..|.|||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~-----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~g-advn~~~~~~g~TpL   91 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV-----NDCNDLYETPIFSCLEKDKVNVEILKFLIENG-ADVNFKTRDNNLSAL   91 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh-----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCC-CCCCccCCCCCCCHH
Confidence            567799999999999999999999853     234567999999999865  899999999999 6777776 5899999


Q ss_pred             hHHhhC---CCHHHHHHhhhcCCCcccccCCCCChHHHHHHh--cCChHHHHHHHhccCCCCCcccccCCCchHHHH-HH
Q 039828          222 HWAASV---DHLEGVRFLYEINPDSVLQKNEEGLYPFHLASA--NGCVPVMGEFLEKENMPHPNELFNNKGQNILHV-AA  295 (626)
Q Consensus       222 h~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~--~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~-A~  295 (626)
                      |+|+..   ++.+++++|++++++ ++.+|..|.||||.|+.  .++.+++++|++.|.+++.   +|..|.||||. |+
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~---~d~~g~t~Lh~~a~  167 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN---KDFDNNNILYSYIL  167 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc---ccCCCCcHHHHHHH
Confidence            998763   579999999999998 88899999999999876  4689999999998866544   58999999996 56


Q ss_pred             HcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhC
Q 039828          296 KKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYG  335 (626)
Q Consensus       296 ~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~  335 (626)
                      ..++.+++++|++.|    ++++.+|..|.||||+|...+
T Consensus       168 ~~~~~~iv~~Ll~~G----adi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        168 FHSDKKIFDFLTSLG----IDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             hcCCHHHHHHHHHcC----CCCCCCCCCCCCHHHHHhhhh
Confidence            678999999999998    889999999999999999764

>PF13962 PGG: Domain of unknown function

Probab=99.92  E-value=4.5e-25  Score=187.31  Aligned_cols=113  Identities=31%  Similarity=0.351  Sum_probs=96.7

Q ss_pred             hhhhhhhhhhhHhhHHHHHhhhhhhhhccCCCCCCCCCCCCcceeeccCCCCCcccCCCCCCCCCCcccccccchhhhhh
Q 039828          427 QKAMKDRINNLLVVAALIAGASFAASVQMSSSHSESQTNTTASIIIRGAGAAPFALPCSNGHGGCDESQKKQRTWIKVFT  506 (626)
Q Consensus       427 ~~~~~~~~~~l~vva~Liat~~f~a~~~~pgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  506 (626)
                      +||+++.+|++++||+||||+||+|++|||||+|+++++.|.+++.+                        ++..|++|+
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~------------------------~~~~f~~F~   56 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAK------------------------KPSAFKAFL   56 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhcc------------------------ccchhhhHH
Confidence            46899999999999999999999999999999998875666666544                        134899999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039828          507 VSNTIAMYTSITAAVLLCSLQLLNTKLASLEFSFASLSTVIALYTSCIAFYASIHMS  563 (626)
Q Consensus       507 ~~n~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~~  563 (626)
                      +||++||++|+++++++++......+..++.++++..++++++.+|++||++|+++|
T Consensus        57 ~~nt~af~~S~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   57 ISNTIAFFSSLAAIFLLISGLDDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999533233455666899999999999999999999999875

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=6.2e-24  Score=217.47  Aligned_cols=212  Identities=15%  Similarity=0.082  Sum_probs=180.1

Q ss_pred             HHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCc----cccccCCCCHHHHHHH--hCCHHHHH
Q 039828          127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDD----CDAKLEGKSPVKVAIE--LQKLGLLK  200 (626)
Q Consensus       127 ~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~g~t~L~~A~~--~g~~~~v~  200 (626)
                      .-+.+++++++.+++ ....+|     +|+..+..+++++|++++...+.    ...+..++|+||.++.  .|+.++++
T Consensus        62 ~~~~~~~~~~~~~i~-~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~  135 (437)
T PHA02795         62 DVLYDYFRIHRDNID-QYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVD  135 (437)
T ss_pred             HHHHHHHHHcCcchh-hhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHH
Confidence            445688999999887 444444     89999999999999999885441    1355679999999999  89999999


Q ss_pred             HHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCccccc-----CCCCChHHHHHHhcCChHHHHHHHhccC
Q 039828          201 MMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQK-----NEEGLYPFHLASANGCVPVMGEFLEKEN  275 (626)
Q Consensus       201 ~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~-----d~~g~tpLh~A~~~g~~~~v~~Ll~~g~  275 (626)
                      +|+++| ++++..  ++.||||.|+..++.+++++|+++|++..+..     +..+.+++|.|+..++.+++++|+++|+
T Consensus       136 ~LI~~G-ADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GA  212 (437)
T PHA02795        136 FMVDHG-AVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIE  212 (437)
T ss_pred             HHHHCC-CCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcC
Confidence            999999 666653  45899999999999999999999997543332     2347899999999999999999999885


Q ss_pred             CCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCC--------HHHHHHHhhCC
Q 039828          276 MPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGH--------YFVAVILGKDG  347 (626)
Q Consensus       276 ~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~--------~~iv~~Ll~~g  347 (626)
                      +.   +.+|..|+||||+|+.+|+.+++++|++.|    +++|.+|..|+||||+|+..|+        .+++++|+++|
T Consensus       213 DI---N~kD~~G~TpLh~Aa~~g~~eiVelLL~~G----AdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~g  285 (437)
T PHA02795        213 DI---NQLDAGGRTLLYRAIYAGYIDLVSWLLENG----ANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREP  285 (437)
T ss_pred             Cc---CcCCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCC
Confidence            54   456999999999999999999999999998    8999999999999999999984        69999999999


Q ss_pred             CCcccccc
Q 039828          348 RAESDIIN  355 (626)
Q Consensus       348 ~~d~~~~n  355 (626)
                       ++++...
T Consensus       286 -adI~~~~  292 (437)
T PHA02795        286 -LSIDCIK  292 (437)
T ss_pred             -CCCCchh
Confidence             8776643

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=2e-24  Score=192.03  Aligned_cols=240  Identities=20%  Similarity=0.224  Sum_probs=203.9

Q ss_pred             hhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 039828           92 MKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEAL  171 (626)
Q Consensus        92 ~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  171 (626)
                      .++..|..-+-.+.+       .++          .+++.....-+++-....+.+|+++++.++-.++.+.+...+.++
T Consensus        57 ~~~~lge~~~~~~~~-------s~n----------sd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~  119 (296)
T KOG0502|consen   57 LRNALGESLLTVAVR-------SGN----------SDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNG  119 (296)
T ss_pred             HHHhcCCcccchhhh-------cCC----------cHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeeccc
Confidence            466677777777777       777          777777777777766677888999999999999999999999887


Q ss_pred             CCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCC
Q 039828          172 PVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEG  251 (626)
Q Consensus       172 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g  251 (626)
                      ...+  ..+.-+.+|+.+++...+++.+..+.+.   .++..|+.|.|||.||+.+|++++|++||+.|++ +....+..
T Consensus       120 ~rgn--evs~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd-p~~lgk~r  193 (296)
T KOG0502|consen  120 ARGN--EVSLMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD-PDALGKYR  193 (296)
T ss_pred             ccCC--ccccccCChhhHHHHHHHHHHHHHHhhc---cccCccccCchHhHHHHhcCchHHHHHHHHcCCC-hhhhhhhh
Confidence            7443  3444689999999999888877776654   4888999999999999999999999999999998 77788888


Q ss_pred             ChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHH
Q 039828          252 LYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLA  331 (626)
Q Consensus       252 ~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA  331 (626)
                      .++|.+|++.|..++|++|+.++.   .++..|.+|-|||-+|++.++.++++.|++.|    ++++..|..|++++.+|
T Consensus       194 esALsLAt~ggytdiV~lLL~r~v---dVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sG----Ad~t~e~dsGy~~mdlA  266 (296)
T KOG0502|consen  194 ESALSLATRGGYTDIVELLLTREV---DVNVYDWNGGTPLLYAVRGNHVKCVESLLNSG----ADVTQEDDSGYWIMDLA  266 (296)
T ss_pred             hhhHhHHhcCChHHHHHHHHhcCC---CcceeccCCCceeeeeecCChHHHHHHHHhcC----CCcccccccCCcHHHHH
Confidence            999999999999999999999653   34556999999999999999999999999999    89999999999999999


Q ss_pred             HHhCCHHHHHHHhhCCCCcccccccCCCCHHH
Q 039828          332 ALYGHYFVAVILGKDGRAESDIINFYGQTAYD  363 (626)
Q Consensus       332 ~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~  363 (626)
                      +..|+. +|+..++.- ++++.+|+.-+||+|
T Consensus       267 ValGyr-~Vqqvie~h-~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  267 VALGYR-IVQQVIEKH-ALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHhhhH-HHHHHHHHH-HHHHhhcccCCCCCC
Confidence            999988 777777766 777788877777764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.91  E-value=2.8e-23  Score=212.64  Aligned_cols=238  Identities=12%  Similarity=0.030  Sum_probs=178.1

Q ss_pred             HHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhh
Q 039828           33 MATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAK  112 (626)
Q Consensus        33 ~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~  112 (626)
                      +-+|++.++.+ ++.++.+|     +|+..+..|++++|+.+|++++-     ....+ .++..++|+||+++..     
T Consensus        64 ~~~~~~~~~~~-i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~-----~~~~~-~~~~~~~~~L~~~~~n-----  126 (437)
T PHA02795         64 LYDYFRIHRDN-IDQYIVDR-----LFAYITYKDIISALVSKNYMEDI-----FSIII-KNCNSVQDLLLYYLSN-----  126 (437)
T ss_pred             HHHHHHHcCcc-hhhhhhhh-----HHhhcchHHHHHHHHhcccccch-----hhhhh-hccccccHHHHHHHHh-----
Confidence            45667777665 77777777     99999999999999999987531     11122 3788899999999872     


Q ss_pred             ccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCcccc----ccCCCCHHH
Q 039828          113 KDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDA----KLEGKSPVK  188 (626)
Q Consensus       113 ~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~----~~~g~t~L~  188 (626)
                      ..++          .+++++|+++|++++.   .++.||||.|+..++.+++++|+++|........    +..+.+++|
T Consensus       127 ~~n~----------~eiV~~LI~~GADIn~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~  193 (437)
T PHA02795        127 AYVE----------IDIVDFMVDHGAVIYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGF  193 (437)
T ss_pred             cCCC----------HHHHHHHHHCCCCCCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhH
Confidence            1355          9999999999999973   3568999999999999999999999863221111    134678888


Q ss_pred             HHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCC-----
Q 039828          189 VAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGC-----  263 (626)
Q Consensus       189 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-----  263 (626)
                      .|...++.++++.|++.+ ++++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||.|+..|+     
T Consensus       194 ~a~~~~~~eIve~LIs~G-ADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~~g~~~~~~  271 (437)
T PHA02795        194 LVDEPTVLEIYKLCIPYI-EDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN-VNAVMSNGYTCLDVAVDRGSVIARR  271 (437)
T ss_pred             HHHhcCHHHHHHHHHhCc-CCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCccccc
Confidence            888888888888888887 67888888888888888888888888888888887 77888888888888888874     


Q ss_pred             ---hHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcC
Q 039828          264 ---VPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEAS  310 (626)
Q Consensus       264 ---~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~  310 (626)
                         .++++.|+++|++.+..      ..+++...  ..+.++++.+++..
T Consensus       272 ~~~~eIvelLL~~gadI~~~------~~~~~~~~--~~n~~~ik~lI~y~  313 (437)
T PHA02795        272 ETHLKILEILLREPLSIDCI------KLAILNNT--IENHDVIKLCIKYF  313 (437)
T ss_pred             ccHHHHHHHHHhCCCCCCch------hHHhhhcc--cchHHHHHHHHHHH
Confidence               57888888866443332      22222211  12466777777664

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=1.9e-22  Score=229.55  Aligned_cols=240  Identities=18%  Similarity=0.141  Sum_probs=128.5

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHH-HHHHhhhhhhccCCCCCCCCCCcHHH
Q 039828           50 SKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALH-EALNALQDAKKDKNKPKEDGVTSLDS  128 (626)
Q Consensus        50 ~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh-~A~~~~~~~~~~~~~~~~~~~~~~~~  128 (626)
                      ..++++++.|++.|+.+.|+.+++.+...          .+|..|..|.|||| .|+.       +++          .+
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~----------~in~~d~~G~t~Lh~~A~~-------~~~----------~e   67 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKL----------NINCPDRLGRSALFVAAIE-------NEN----------LE   67 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhcccccc----------CCCCcCccchhHHHHHHHh-------cCh----------HH
Confidence            45678888999999999998888873211          22447788899999 7776       777          88


Q ss_pred             HHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH----hCCCCC--------ccccccCCCCHHHHHHHhCCH
Q 039828          129 LARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILE----ALPVND--------DCDAKLEGKSPVKVAIELQKL  196 (626)
Q Consensus       129 i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~----~~~~~~--------~~~~~~~g~t~L~~A~~~g~~  196 (626)
                      +++.|++++.     .+..|+||||.|+.. +.+.++.++.    ..+...        .......|.||||.|+..|+.
T Consensus        68 iv~lLl~~g~-----~~~~G~T~Lh~A~~~-~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~  141 (743)
T TIGR00870        68 LTELLLNLSC-----RGAVGDTLLHAISLE-YVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNY  141 (743)
T ss_pred             HHHHHHhCCC-----CCCcChHHHHHHHhc-cHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCH
Confidence            8888888876     466788999988862 3333333333    221100        001112355555555555555


Q ss_pred             HHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCC
Q 039828          197 GLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENM  276 (626)
Q Consensus       197 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~  276 (626)
                      ++++.|+++| ++++.++....             +.   ...    .......|.||||.|+..|+.+++++|+++|++
T Consensus       142 eiVklLL~~G-Adv~~~~~~~~-------------~~---~~~----~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad  200 (743)
T TIGR00870       142 EIVKLLLERG-ASVPARACGDF-------------FV---KSQ----GVDSFYHGESPLNAAACLGSPSIVALLSEDPAD  200 (743)
T ss_pred             HHHHHHHhCC-CCCCcCcCCch-------------hh---cCC----CCCcccccccHHHHHHHhCCHHHHHHHhcCCcc
Confidence            5555555555 33332211000             00   000    000112355566665555566666555554432


Q ss_pred             CCCcccccCCCchHHHHHHHcC---------ChHHHHHHHHcCCc---chhhcccCCCCCCCHHHHHHHhCCHHHHHHHh
Q 039828          277 PHPNELFNNKGQNILHVAAKKG---------RDVSVTHILEASDL---TDKLINEMDDDGNTPLHLAALYGHYFVAVILG  344 (626)
Q Consensus       277 ~~~~~~~d~~g~t~Lh~A~~~~---------~~~i~~~Ll~~~~~---~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll  344 (626)
                      +   +.+|..|+||||+|+..+         ...+.+++++.+..   .....+..|.+|.||||+|+..|+.+++++|+
T Consensus       201 i---n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL  277 (743)
T TIGR00870       201 I---LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKL  277 (743)
T ss_pred             h---hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHH
Confidence            2   333555556666555554         12233444433211   11122445566666666666666666666666


Q ss_pred             hC
Q 039828          345 KD  346 (626)
Q Consensus       345 ~~  346 (626)
                      +.
T Consensus       278 ~~  279 (743)
T TIGR00870       278 AI  279 (743)
T ss_pred             HH
Confidence            53

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=2.3e-22  Score=230.00  Aligned_cols=179  Identities=18%  Similarity=0.159  Sum_probs=164.5

Q ss_pred             ccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHH
Q 039828          180 KLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLAS  259 (626)
Q Consensus       180 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  259 (626)
                      +..+.++|+.|+..|+.++++.|++.+ .+++..|.+|.||||+|+..|+.+++++|++++++ ++.+|.+|.||||.|+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G-~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~G~TpL~~A~  599 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAK-LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDANGNTALWNAI  599 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCCCCCHHHHHH
Confidence            345678999999999999999999998 77899999999999999999999999999999988 8889999999999999


Q ss_pred             hcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHH
Q 039828          260 ANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFV  339 (626)
Q Consensus       260 ~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~i  339 (626)
                      ..|+.++++.|++.+...+     ...|.++||.|+.+|+.+++++|+++|    +++|.+|.+|+||||+|+..|+.++
T Consensus       600 ~~g~~~iv~~L~~~~~~~~-----~~~~~~~L~~Aa~~g~~~~v~~Ll~~G----adin~~d~~G~TpLh~A~~~g~~~i  670 (823)
T PLN03192        600 SAKHHKIFRILYHFASISD-----PHAAGDLLCTAAKRNDLTAMKELLKQG----LNVDSEDHQGATALQVAMAEDHVDM  670 (823)
T ss_pred             HhCCHHHHHHHHhcCcccC-----cccCchHHHHHHHhCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            9999999999998653322     346789999999999999999999998    8899999999999999999999999


Q ss_pred             HHHHhhCCCCcccccccCC-CCHHHHHHHhcc
Q 039828          340 AVILGKDGRAESDIINFYG-QTAYDIAEQQYA  370 (626)
Q Consensus       340 v~~Ll~~g~~d~~~~n~~g-~tpl~la~~~~~  370 (626)
                      +++|+++| +|++..|..| .||.+++.....
T Consensus       671 v~~Ll~~G-Adv~~~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        671 VRLLIMNG-ADVDKANTDDDFSPTELRELLQK  701 (823)
T ss_pred             HHHHHHcC-CCCCCCCCCCCCCHHHHHHHHHH
Confidence            99999999 9999999998 999999876543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.89  E-value=7.6e-24  Score=225.17  Aligned_cols=300  Identities=16%  Similarity=0.122  Sum_probs=264.6

Q ss_pred             cccccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccc
Q 039828            4 TFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQ   83 (626)
Q Consensus         4 ~~~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~   83 (626)
                      .-.+-+|..|-+||.+|+..||   ..  +|+.|++...++-...|..++|+|-+||..|..++|+.||..|++-.    
T Consensus       781 aniehrdkkgf~plImaatagh---~t--vV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~ganke----  851 (2131)
T KOG4369|consen  781 ANIEHRDKKGFVPLIMAATAGH---IT--VVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKE----  851 (2131)
T ss_pred             ccccccccccchhhhhhcccCc---hH--HHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhcccc----
Confidence            3457789999999999999999   88  99999999888656779999999999999999999999999998653    


Q ss_pred             hhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCccccc-CCCCCcHHHHHHHcCCHH
Q 039828           84 IDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLM-NVDCKSPLYLAVESKNED  162 (626)
Q Consensus        84 ~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~-~~~g~tpL~~A~~~g~~~  162 (626)
                              .+|....|||.+|..       .+.          .+++..|++.|..++... .+-|.+||.+|..+|+.+
T Consensus       852 --------hrnvsDytPlsla~S-------ggy----------~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~  906 (2131)
T KOG4369|consen  852 --------HRNVSDYTPLSLARS-------GGY----------TKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQA  906 (2131)
T ss_pred             --------ccchhhcCchhhhcC-------cch----------HHHHHHHhhcccccccccccccCcchhhhhhhccccH
Confidence                    488889999999998       888          999999999998887443 456899999999999999


Q ss_pred             HHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCC
Q 039828          163 ILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD  242 (626)
Q Consensus       163 ~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (626)
                      .++.|++.+.+.+... ..+-+|+|-+|+..|..+++..||... .++..+-+.|.|||+-++..|.+|+-++|+..|+|
T Consensus       907 at~~ll~~gsdiNaqI-eTNrnTaltla~fqgr~evv~lLLa~~-anvehRaktgltplme~AsgGyvdvg~~li~~gad  984 (2131)
T KOG4369|consen  907 ATLSLLQPGSDINAQI-ETNRNTALTLALFQGRPEVVFLLLAAQ-ANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGAD  984 (2131)
T ss_pred             HHHHHhcccchhcccc-ccccccceeeccccCcchHHHHHHHHh-hhhhhhcccCCcccchhhcCCccccchhhhhcccc
Confidence            9999999887544332 336789999999999999999999988 78888999999999999999999999999999998


Q ss_pred             cc-cccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCC
Q 039828          243 SV-LQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMD  321 (626)
Q Consensus       243 ~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d  321 (626)
                      .. ........|+|-+++..||...++.|+...   ...+.++++|.|+|.+|+..|....+..|++++    ++++..|
T Consensus       985 ~nasPvp~T~dtalti~a~kGh~kfv~~lln~~---atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~----ad~d~qd 1057 (2131)
T KOG4369|consen  985 TNASPVPNTWDTALTIPANKGHTKFVPKLLNGD---ATVRVPNKKGCTVLWLASAGGALSSCPILVSSV----ADADQQD 1057 (2131)
T ss_pred             cccCCCCCcCCccceeecCCCchhhhHHhhCCc---cceecccCCCCcccchhccCCccccchHHhhcc----cChhhhh
Confidence            32 123445679999999999999999999743   445677999999999999999999999999998    8999999


Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHhhC
Q 039828          322 DDGNTPLHLAALYGHYFVAVILGKD  346 (626)
Q Consensus       322 ~~G~TpLhlA~~~~~~~iv~~Ll~~  346 (626)
                      +.-+++++-|.++|+.+||++....
T Consensus      1058 nr~~S~~maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1058 NRTNSRTMAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred             cccccccHHHHHhchhheeccccCc
Confidence            9999999999999999999888653

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=8.6e-23  Score=211.90  Aligned_cols=231  Identities=30%  Similarity=0.309  Sum_probs=201.4

Q ss_pred             HHHHHHhhcCCC------------CcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhC
Q 039828          127 DSLARSLVSEDP------------NASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQ  194 (626)
Q Consensus       127 ~~i~~~Ll~~~~------------~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g  194 (626)
                      .+.+..|++...            +-....|.+|.|+||.|+.+|+.++++.|++.-+..+.+.  ..|.+|||+|+..|
T Consensus        16 ~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d--~kg~~plhlaaw~g   93 (854)
T KOG0507|consen   16 YDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCD--TKGILPLHLAAWNG   93 (854)
T ss_pred             HHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhh--ccCcceEEehhhcC
Confidence            777777777421            1122557899999999999999999999999877555555  67999999999999


Q ss_pred             CHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhcc
Q 039828          195 KLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKE  274 (626)
Q Consensus       195 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  274 (626)
                      +.++++.++.++ ...+..+..|.||||.|+++|+.+++.+|++++++ ...+|+.+.|+|.+|++.|..++++.|++..
T Consensus        94 ~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~  171 (854)
T KOG0507|consen   94 NLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNAD-PFIRNNSKETVLDLASRFGRAEVVQMLLQKK  171 (854)
T ss_pred             cchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcCCC-ccccCcccccHHHHHHHhhhhHHHHHHhhhc
Confidence            999999999998 78889999999999999999999999999999999 7789999999999999999999999999752


Q ss_pred             CCCCC------cccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCC
Q 039828          275 NMPHP------NELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGR  348 (626)
Q Consensus       275 ~~~~~------~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~  348 (626)
                       .+..      ...++..+-+|||+|+++|+.++++.|++.|    .++|...++| |+||-|+.+|..++|.+|++.| 
T Consensus       172 -~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag----~din~~t~~g-talheaalcgk~evvr~ll~~g-  244 (854)
T KOG0507|consen  172 -FPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAG----FDINYTTEDG-TALHEAALCGKAEVVRFLLEIG-  244 (854)
T ss_pred             -cchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcC----CCcccccccc-hhhhhHhhcCcchhhhHHHhhc-
Confidence             2211      1223556789999999999999999999998    8888877766 9999999999999999999999 


Q ss_pred             CcccccccCCCCHHHHHHHh
Q 039828          349 AESDIINFYGQTAYDIAEQQ  368 (626)
Q Consensus       349 ~d~~~~n~~g~tpl~la~~~  368 (626)
                      ++..++|.+|+|+|++-...
T Consensus       245 in~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  245 INTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             cccccccccchHHHHHHHhc
Confidence            99999999999999997654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=3e-23  Score=184.63  Aligned_cols=239  Identities=18%  Similarity=0.179  Sum_probs=176.3

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHH
Q 039828           48 QNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLD  127 (626)
Q Consensus        48 ~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~  127 (626)
                      ++..|+.-+-.|.+.|+.+++..++...++-.           ...+.+|++++|.+.-       .++          .
T Consensus        58 ~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~-----------~~t~p~g~~~~~v~ap-------~~s----------~  109 (296)
T KOG0502|consen   58 RNALGESLLTVAVRSGNSDVAVQSAQLDPDAI-----------DETDPEGWSALLVAAP-------CGS----------V  109 (296)
T ss_pred             HHhcCCcccchhhhcCCcHHHHHhhccCCCCC-----------CCCCchhhhhhhhcCC-------CCC----------c
Confidence            46667777777777777777777765544321           1245557777777766       555          5


Q ss_pred             HHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCC
Q 039828          128 SLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQP  207 (626)
Q Consensus       128 ~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~  207 (626)
                      +.+..++.++...+ ..+--+.+|+.+++...+.+.+..+.+.    ..+..+..|.|||.+|+..|++.++++|++.| 
T Consensus       110 ~k~sttltN~~rgn-evs~~p~s~~slsVhql~L~~~~~~~~n----~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~G-  183 (296)
T KOG0502|consen  110 DKVSTTLTNGARGN-EVSLMPWSPLSLSVHQLHLDVVDLLVNN----KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSG-  183 (296)
T ss_pred             ceeeeeecccccCC-ccccccCChhhHHHHHHHHHHHHHHhhc----cccCccccCchHhHHHHhcCchHHHHHHHHcC-
Confidence            66666666666655 5566777888888877777766665554    23445567888888888888888888888887 


Q ss_pred             ccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCC
Q 039828          208 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKG  287 (626)
Q Consensus       208 ~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g  287 (626)
                      ++++...+...++|.+|++.|..++|++||+++.+ ++..|.+|-|||-+|++.|++++++.|+..|+++...   +..|
T Consensus       184 Adp~~lgk~resALsLAt~ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e---~dsG  259 (296)
T KOG0502|consen  184 ADPDALGKYRESALSLATRGGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQE---DDSG  259 (296)
T ss_pred             CChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHhcCCCcccc---cccC
Confidence            67777777778888888888888888888888887 8888888888888888888888888888888766554   7778


Q ss_pred             chHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHH
Q 039828          288 QNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLH  329 (626)
Q Consensus       288 ~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLh  329 (626)
                      .+++..|+..|.. +++.++++-    .+.+.+|..-.||+|
T Consensus       260 y~~mdlAValGyr-~Vqqvie~h----~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  260 YWIMDLAVALGYR-IVQQVIEKH----ALKLCQDSEKRTPLH  296 (296)
T ss_pred             CcHHHHHHHhhhH-HHHHHHHHH----HHHHhhcccCCCCCC
Confidence            8888888888866 777777764    677777877777775

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.88  E-value=2.5e-22  Score=208.55  Aligned_cols=242  Identities=22%  Similarity=0.249  Sum_probs=197.1

Q ss_pred             CcHHHHHHhcCCCccccHHHHHHHHhhC------------cccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCc
Q 039828           14 NTLLHIAAAGSIRNHENMAMATTLARKY------------PFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSS   81 (626)
Q Consensus        14 ~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~------------~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~   81 (626)
                      .+-|--|+..|+   .+  .+..+|+..            ++..+..|.+|.|+||.||.+|+.++++.|+++.+     
T Consensus         4 ~qel~~a~ka~d---~~--tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea-----   73 (854)
T KOG0507|consen    4 KQELIDACKAGD---YD--TVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEA-----   73 (854)
T ss_pred             hhhHHHhhhccc---HH--HHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchh-----
Confidence            345677899999   88  888888741            23477889999999999999999999999999765     


Q ss_pred             cchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCH
Q 039828           82 SQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNE  161 (626)
Q Consensus        82 ~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  161 (626)
                             .++..|..|.+|||+|+.       .|+          .+++++++.++..++ ..+..|+||||.|++.|+.
T Consensus        74 -------~ldl~d~kg~~plhlaaw-------~g~----------~e~vkmll~q~d~~n-a~~~e~~tplhlaaqhgh~  128 (854)
T KOG0507|consen   74 -------LLDLCDTKGILPLHLAAW-------NGN----------LEIVKMLLLQTDILN-AVNIENETPLHLAAQHGHL  128 (854)
T ss_pred             -------hhhhhhccCcceEEehhh-------cCc----------chHHHHHHhcccCCC-cccccCcCccchhhhhcch
Confidence                   566788999999999999       999          999999999996665 8889999999999999999


Q ss_pred             HHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCcc-------ccccCCCCCchhhHHhhCCCHHHHH
Q 039828          162 DILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPAL-------LLIQDEQMNTPMHWAASVDHLEGVR  234 (626)
Q Consensus       162 ~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-------~~~~d~~g~tpLh~Aa~~g~~~~v~  234 (626)
                      +++.+|+++++  +.+..+..+.|++..|++.|..++++.|+...-..       ...++..+.+|||.|+.+|+.++++
T Consensus       129 dvv~~Ll~~~a--dp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~  206 (854)
T KOG0507|consen  129 EVVFYLLKKNA--DPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQ  206 (854)
T ss_pred             HHHHHHHhcCC--CccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHH
Confidence            99999999987  56777788999999999999999999999873110       1234455677888888888888888


Q ss_pred             HhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHc
Q 039828          235 FLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKK  297 (626)
Q Consensus       235 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~  297 (626)
                      .|++.+.+ ++.....| |+||.|+.+|..+++..|++.|.+.   ..++.+|+|+|.+-...
T Consensus       207 ~ll~ag~d-in~~t~~g-talheaalcgk~evvr~ll~~gin~---h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  207 ALLEAGFD-INYTTEDG-TALHEAALCGKAEVVRFLLEIGINT---HIKNQHGQTALDIIIDL  264 (854)
T ss_pred             HHHhcCCC-cccccccc-hhhhhHhhcCcchhhhHHHhhcccc---ccccccchHHHHHHHhc
Confidence            88888877 55554444 7888888888888888888866333   34578888887776544

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=3.4e-22  Score=227.49  Aligned_cols=125  Identities=22%  Similarity=0.170  Sum_probs=95.6

Q ss_pred             CCCChHHHHHHhcCChHHHHHHHhccCCCCCcc-----------cccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhc
Q 039828          249 EEGLYPFHLASANGCVPVMGEFLEKENMPHPNE-----------LFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLI  317 (626)
Q Consensus       249 ~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~-----------~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~i  317 (626)
                      ..|.||||+|+.+|+.++++.|+++|++++...           .....|+||||.|+..++.+++++|++.+    +++
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g----adi  201 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP----ADI  201 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC----cch
Confidence            356666666666666666666666655544221           11246999999999999999999999998    799


Q ss_pred             ccCCCCCCCHHHHHHHhC---------CHHHHHHHhhCCC--Ccc----cccccCCCCHHHHHHHhccccccccc
Q 039828          318 NEMDDDGNTPLHLAALYG---------HYFVAVILGKDGR--AES----DIINFYGQTAYDIAEQQYAKIIPEFS  377 (626)
Q Consensus       318 n~~d~~G~TpLhlA~~~~---------~~~iv~~Ll~~g~--~d~----~~~n~~g~tpl~la~~~~~~~i~~~~  377 (626)
                      |.+|..|+||||+|+..+         ...+.++++..+.  .+.    ++.|++|.||+|+|++.|+.++.+++
T Consensus       202 n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lL  276 (743)
T TIGR00870       202 LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLK  276 (743)
T ss_pred             hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHH
Confidence            999999999999999986         2346666665541  333    78899999999999999998888765

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=1e-21  Score=187.64  Aligned_cols=160  Identities=27%  Similarity=0.297  Sum_probs=145.0

Q ss_pred             ccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhc-----CChHHHHHHHhccCCCCCccccc
Q 039828          210 LLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASAN-----GCVPVMGEFLEKENMPHPNELFN  284 (626)
Q Consensus       210 ~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-----g~~~~v~~Ll~~g~~~~~~~~~d  284 (626)
                      +|..|.+|+|+|||++.++++++|+.||+.+...++.+|.-|+||+++++..     .+.++|..|.+-|   +..-.-.
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg---nVNaKAs  337 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG---DVNAKAS  337 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc---Ccchhhh
Confidence            5677999999999999999999999999999998999999999999998764     4778899998865   2222225


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHH
Q 039828          285 NKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDI  364 (626)
Q Consensus       285 ~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~l  364 (626)
                      ..|+|+|++|+.+|+.++++.|+..|    +++|.+|.+|-|+|+.|+.+||.|++++|+....+|....|.+|-|+|.+
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacg----AdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~I  413 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACG----ADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSI  413 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHcc----CCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhh
Confidence            67999999999999999999999998    99999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccccccc
Q 039828          365 AEQQYAKIIPEF  376 (626)
Q Consensus       365 a~~~~~~~i~~~  376 (626)
                      |.+.|+.+|.-+
T Consensus       414 Aleagh~eIa~m  425 (452)
T KOG0514|consen  414 ALEAGHREIAVM  425 (452)
T ss_pred             HHhcCchHHHHH
Confidence            999999877654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.85  E-value=3.1e-20  Score=212.54  Aligned_cols=179  Identities=18%  Similarity=0.184  Sum_probs=159.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHH
Q 039828          145 NVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWA  224 (626)
Q Consensus       145 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  224 (626)
                      +.++.++|+.||..|+.++++.|++.+.+  ....+..|.||||.|+..|+.++++.|++.+ .+++.+|.+|.||||+|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d--~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-adin~~d~~G~TpL~~A  598 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLD--PDIGDSKGRTPLHIAASKGYEDCVLVLLKHA-CNVHIRDANGNTALWNA  598 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcChHHHHHHHHhcC-CCCCCcCCCCCCHHHHH
Confidence            44567999999999999999999999874  4556778999999999999999999999987 78899999999999999


Q ss_pred             hhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHH
Q 039828          225 ASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVT  304 (626)
Q Consensus       225 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~  304 (626)
                      +..|+.+++++|++.+.. .  .+..+.++||.|+.+|+.++++.|+++|.+++   .+|.+|+||||+|+..|+.++++
T Consensus       599 ~~~g~~~iv~~L~~~~~~-~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin---~~d~~G~TpLh~A~~~g~~~iv~  672 (823)
T PLN03192        599 ISAKHHKIFRILYHFASI-S--DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVD---SEDHQGATALQVAMAEDHVDMVR  672 (823)
T ss_pred             HHhCCHHHHHHHHhcCcc-c--CcccCchHHHHHHHhCCHHHHHHHHHCCCCCC---CCCCCCCCHHHHHHHCCcHHHHH
Confidence            999999999999987654 2  34567899999999999999999999887664   45899999999999999999999


Q ss_pred             HHHHcCCcchhhcccCCCCC-CCHHHHHHHhCC
Q 039828          305 HILEASDLTDKLINEMDDDG-NTPLHLAALYGH  336 (626)
Q Consensus       305 ~Ll~~~~~~~~~in~~d~~G-~TpLhlA~~~~~  336 (626)
                      +|+++|    ++++..|..| .||++++.....
T Consensus       673 ~Ll~~G----Adv~~~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        673 LLIMNG----ADVDKANTDDDFSPTELRELLQK  701 (823)
T ss_pred             HHHHcC----CCCCCCCCCCCCCHHHHHHHHHH
Confidence            999998    8899999988 999998865543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=1.4e-20  Score=189.56  Aligned_cols=206  Identities=26%  Similarity=0.344  Sum_probs=168.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCH
Q 039828          151 PLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHL  230 (626)
Q Consensus       151 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~  230 (626)
                      .+.-|+..|..+-++.|+..+..+  ...+.+|.|+||-++.-.+.+|+++|++++ ++++..|.+|+||||.|+..|+.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~--~~~n~DglTalhq~~id~~~e~v~~l~e~g-a~Vn~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP--NLCNVDGLTALHQACIDDNLEMVKFLVENG-ANVNAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc--cccCCccchhHHHHHhcccHHHHHHHHHhc-CCccccccccCCcchhhcccccH
Confidence            355677888999999999987644  445567999999999999999999999998 88999999999999999999999


Q ss_pred             HHHHHhhhcCCCcccccCCCCChHHHHHH-------------hcCC-h------------HHHHHHHhccCCCCCccccc
Q 039828          231 EGVRFLYEINPDSVLQKNEEGLYPFHLAS-------------ANGC-V------------PVMGEFLEKENMPHPNELFN  284 (626)
Q Consensus       231 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~-------------~~g~-~------------~~v~~Ll~~g~~~~~~~~~d  284 (626)
                      .++++|++++++ ....|.+|..|+..+.             ..|. +            +-+...+..|...+..   +
T Consensus       120 ~i~~~li~~gA~-~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~---~  195 (527)
T KOG0505|consen  120 NIVEYLIQHGAN-LLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDAR---H  195 (527)
T ss_pred             HHHHHHHHhhhh-hhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccc---c
Confidence            999999999888 5556666666654321             1111 1            1122233345444433   5


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHH
Q 039828          285 NKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDI  364 (626)
Q Consensus       285 ~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~l  364 (626)
                      ..|.|.||+|+.+|..++.++|++.+    ..++.+|.+|+||||.|+.+|+.+++++|+.+| ++.+.+++.|+||+|+
T Consensus       196 ~rG~T~lHvAaa~Gy~e~~~lLl~ag----~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~g-a~~d~~t~~g~~p~dv  270 (527)
T KOG0505|consen  196 ARGATALHVAAANGYTEVAALLLQAG----YSVNIKDYDGWTPLHAAAHWGQEDACELLVEHG-ADMDAKTKMGETPLDV  270 (527)
T ss_pred             cccchHHHHHHhhhHHHHHHHHHHhc----cCcccccccCCCcccHHHHhhhHhHHHHHHHhh-cccchhhhcCCCCccc
Confidence            55999999999999999999999998    889999999999999999999999999999999 9999999999999999


Q ss_pred             HHHh
Q 039828          365 AEQQ  368 (626)
Q Consensus       365 a~~~  368 (626)
                      |.+.
T Consensus       271 ~dee  274 (527)
T KOG0505|consen  271 ADEE  274 (527)
T ss_pred             hhhh
Confidence            9874

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=5.8e-20  Score=175.66  Aligned_cols=185  Identities=16%  Similarity=0.191  Sum_probs=100.9

Q ss_pred             CHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccc
Q 039828           64 MLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYL  143 (626)
Q Consensus        64 ~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~  143 (626)
                      +.+.|+-.+.....+.   ..-....+|..|.+|||+|||++.       ..|          +++|+.|++.+..-...
T Consensus       238 ~pe~V~~~l~~f~als---~~lL~yvVNlaDsNGNTALHYsVS-------HaN----------F~VV~~LLDSgvC~VD~  297 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALS---PPLLEYVVNLADSNGNTALHYAVS-------HAN----------FDVVSILLDSGVCDVDQ  297 (452)
T ss_pred             CHHHHHHHHHHHHhcC---hHHHHHHhhhhcCCCCeeeeeeec-------ccc----------hHHHHHHhccCcccccc
Confidence            5666664443322221   111445667778888888888877       777          78888777777655557


Q ss_pred             cCCCCCcHHHHHHHc-----CCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCC
Q 039828          144 MNVDCKSPLYLAVES-----KNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMN  218 (626)
Q Consensus       144 ~~~~g~tpL~~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~  218 (626)
                      .|..|.||+++++..     .+.++|..|...+.                                   .+.. -...|+
T Consensus       298 qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-----------------------------------VNaK-AsQ~gQ  341 (452)
T KOG0514|consen  298 QNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD-----------------------------------VNAK-ASQHGQ  341 (452)
T ss_pred             cccccccHHHHHHHHhhcchhhHHHHHHHHhccC-----------------------------------cchh-hhhhcc
Confidence            777777777777643     23344444444433                                   1111 123455


Q ss_pred             chhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcC
Q 039828          219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKG  298 (626)
Q Consensus       219 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~  298 (626)
                      |+|++|+.+|+.++|+.||..++| +|.+|.+|.|+|++||.+||.|+++.|+.  .......+.|.+|-|+|.+|-..|
T Consensus       342 TALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA--~p~cd~sLtD~DgSTAl~IAleag  418 (452)
T KOG0514|consen  342 TALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLA--VPSCDISLTDVDGSTALSIALEAG  418 (452)
T ss_pred             hhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhc--cCcccceeecCCCchhhhhHHhcC
Confidence            555555555555555555555555 55555555555555555555555555554  222333344555555555555555


Q ss_pred             ChHHHHHHH
Q 039828          299 RDVSVTHIL  307 (626)
Q Consensus       299 ~~~i~~~Ll  307 (626)
                      +.+|.-+|.
T Consensus       419 h~eIa~mlY  427 (452)
T KOG0514|consen  419 HREIAVMLY  427 (452)
T ss_pred             chHHHHHHH
Confidence            555554444

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=5.8e-19  Score=162.00  Aligned_cols=144  Identities=14%  Similarity=0.080  Sum_probs=121.0

Q ss_pred             ccccccCCCCCchhhHHhhCCCH----HHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHH---HHHHHhccCCCCCc
Q 039828          208 ALLLIQDEQMNTPMHWAASVDHL----EGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPV---MGEFLEKENMPHPN  280 (626)
Q Consensus       208 ~~~~~~d~~g~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~---v~~Ll~~g~~~~~~  280 (626)
                      .++...+.++.+++|.|++.|+.    +++++|.+.+.. .+..|..|+||||+|+..|+.+.   +++|++.|.+++  
T Consensus        11 ~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin--   87 (166)
T PHA02743         11 LGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL-LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN--   87 (166)
T ss_pred             hHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC--
Confidence            34555677888999999999987    556667777766 67788999999999999988654   789999776554  


Q ss_pred             cccc-CCCchHHHHHHHcCChHHHHHHHH-cCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCC
Q 039828          281 ELFN-NKGQNILHVAAKKGRDVSVTHILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYG  358 (626)
Q Consensus       281 ~~~d-~~g~t~Lh~A~~~~~~~i~~~Ll~-~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g  358 (626)
                       .++ ..|+||||+|+.+++.+++++|++ .+    ++++.+|.+|.||||+|+..++.+++++|+.+| ++++.++..|
T Consensus        88 -~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~g----ad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~  161 (166)
T PHA02743         88 -ARELGTGNTLLHIAASTKNYELAEWLCRQLG----VNLGAINYQHETAYHIAYKMRDRRMMEILRANG-AVCDDPLSIG  161 (166)
T ss_pred             -CCCCCCCCcHHHHHHHhCCHHHHHHHHhccC----CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcccCC
Confidence             346 579999999999999999999995 66    788999999999999999999999999999999 9999988877


Q ss_pred             CC
Q 039828          359 QT  360 (626)
Q Consensus       359 ~t  360 (626)
                      ..
T Consensus       162 ~~  163 (166)
T PHA02743        162 LS  163 (166)
T ss_pred             cc
Confidence            53

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.80  E-value=3.9e-19  Score=152.71  Aligned_cols=142  Identities=27%  Similarity=0.303  Sum_probs=130.2

Q ss_pred             hhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCC
Q 039828          220 PMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGR  299 (626)
Q Consensus       220 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  299 (626)
                      -+.+|+..+.+..|+.||+..++.++.+|.+|.||||-|+.+|+.++++.|+..|+++...   ...|+||||-||+..+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~---T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAK---TNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccc---cccCccchhhhhcccc
Confidence            4678999999999999999999999999999999999999999999999999988777654   8899999999999999


Q ss_pred             hHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCH-HHHHHHhhCCCCcccccccCCCCHHHHHHHh
Q 039828          300 DVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHY-FVAVILGKDGRAESDIINFYGQTAYDIAEQQ  368 (626)
Q Consensus       300 ~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~-~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~  368 (626)
                      .+++.+|+++|    +++|+......||||+|+...+. ..+++|+....+++..+|..+.||+++|...
T Consensus       143 ~~va~~LLqhg----aDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  143 FEVAGRLLQHG----ADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             hhHHHHHHhcc----CcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            99999999999    99999999999999999988764 5678888777799999999999999999876

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.80  E-value=3.2e-19  Score=179.78  Aligned_cols=226  Identities=23%  Similarity=0.197  Sum_probs=120.3

Q ss_pred             HHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccC
Q 039828           17 LHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVR   96 (626)
Q Consensus        17 LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~   96 (626)
                      +--||+.|.   .+  -+..|+..+.. ++..|.+|.|+||-+|...+.+||++|+++|+++            +..|.+
T Consensus        44 ~l~A~~~~d---~~--ev~~ll~~ga~-~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V------------n~~d~e  105 (527)
T KOG0505|consen   44 FLEACSRGD---LE--EVRKLLNRGAS-PNLCNVDGLTALHQACIDDNLEMVKFLVENGANV------------NAQDNE  105 (527)
T ss_pred             HHhcccccc---HH--HHHHHhccCCC-ccccCCccchhHHHHHhcccHHHHHHHHHhcCCc------------cccccc
Confidence            344555555   55  66666666544 4666667777777777777777777777766654            346666


Q ss_pred             CCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCc
Q 039828           97 GNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDD  176 (626)
Q Consensus        97 g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  176 (626)
                      |+||||.|+.       .++          ..++++|+++++++. ..|.+|..|+.++..--..+++..-...-     
T Consensus       106 ~wtPlhaaas-------cg~----------~~i~~~li~~gA~~~-avNsdg~~P~dl~e~ea~~~~l~~~~~r~-----  162 (527)
T KOG0505|consen  106 GWTPLHAAAS-------CGY----------LNIVEYLIQHGANLL-AVNSDGNMPYDLAEDEATLDVLETEMARQ-----  162 (527)
T ss_pred             cCCcchhhcc-------ccc----------HHHHHHHHHhhhhhh-hccCCCCCccccccCcchhHHHHHHHHHh-----
Confidence            6777776666       666          666666666666665 55666666666655444444443333321     


Q ss_pred             cccccCCCCHHHHHHHhC---CHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCCh
Q 039828          177 CDAKLEGKSPVKVAIELQ---KLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLY  253 (626)
Q Consensus       177 ~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  253 (626)
                            |.+ +..+-..-   -++-++..+..+ ...+..+..|.|.||.|+.+|..++.++|++.+.+ ++.+|.+|+|
T Consensus       163 ------gi~-iea~R~~~e~~ml~D~~q~l~~G-~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~dgWt  233 (527)
T KOG0505|consen  163 ------GID-IEAARKAEEQTMLDDARQWLNAG-AELDARHARGATALHVAAANGYTEVAALLLQAGYS-VNIKDYDGWT  233 (527)
T ss_pred             ------ccc-HHHHhhhhHHHHHHHHHHHHhcc-ccccccccccchHHHHHHhhhHHHHHHHHHHhccC-cccccccCCC
Confidence                  111 11110000   111122222333 33444444455555555555555555555555555 5555555555


Q ss_pred             HHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHH
Q 039828          254 PFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAA  295 (626)
Q Consensus       254 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~  295 (626)
                      |||.|+..|..+.+++|+++|+..+.   ....|+||+.+|.
T Consensus       234 PlHAAA~Wg~~~~~elL~~~ga~~d~---~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  234 PLHAAAHWGQEDACELLVEHGADMDA---KTKMGETPLDVAD  272 (527)
T ss_pred             cccHHHHhhhHhHHHHHHHhhcccch---hhhcCCCCccchh
Confidence            55555555555555555554433322   2445555555544

>PHA02741 hypothetical protein; Provisional

Probab=99.78  E-value=1.4e-18  Score=160.32  Aligned_cols=134  Identities=19%  Similarity=0.315  Sum_probs=97.6

Q ss_pred             cccccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhC-----cccccccccCCCcHHHHHHHcCC----HHHHHHHHHc
Q 039828            4 TFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKY-----PFLITMQNSKGDTPLHVAARDGM----LQTAKILVDC   74 (626)
Q Consensus         4 ~~~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~-----~~~l~~~d~~G~TpLh~Aa~~g~----~~iv~~Ll~~   74 (626)
                      .+.+.+|..|.|+||+||..|+   .+  +++.|+...     +..++.+|..|+||||+|+..|+    .+++++|++.
T Consensus        12 ~~~~~~~~~g~t~Lh~Aa~~g~---~~--~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~   86 (169)
T PHA02741         12 EMIAEKNSEGENFFHEAARCGC---FD--IIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL   86 (169)
T ss_pred             HHhhccccCCCCHHHHHHHcCC---HH--HHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc
Confidence            4456677788888888888888   77  777775421     23477778888888888888887    4777888877


Q ss_pred             cccCCCccchhhhHHHHhhcc-CCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhc-CCCCcccccCCCCCcHH
Q 039828           75 AKRMTSSSQIDVKFLMEMKNV-RGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVS-EDPNASYLMNVDCKSPL  152 (626)
Q Consensus        75 ~~~~~~~~~~~~~~~l~~~~~-~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~-~~~~~~~~~~~~g~tpL  152 (626)
                      |++++            .++. +|+||||+|+.       .++          .++++.|++ .+.++. ..|.+|+|||
T Consensus        87 gadin------------~~~~~~g~TpLh~A~~-------~~~----------~~iv~~Ll~~~g~~~~-~~n~~g~tpL  136 (169)
T PHA02741         87 GADIN------------AQEMLEGDTALHLAAH-------RRD----------HDLAEWLCCQPGIDLH-FCNADNKSPF  136 (169)
T ss_pred             CCCCC------------CCCcCCCCCHHHHHHH-------cCC----------HHHHHHHHhCCCCCCC-cCCCCCCCHH
Confidence            77542            3553 78888888887       777          788888876 466665 6677788888


Q ss_pred             HHHHHcCCHHHHHHHHHhCC
Q 039828          153 YLAVESKNEDILEYILEALP  172 (626)
Q Consensus       153 ~~A~~~g~~~~v~~Ll~~~~  172 (626)
                      |+|+..++.++++.|++.+.
T Consensus       137 ~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741        137 ELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            88888888888888777643

>PHA02741 hypothetical protein; Provisional

Probab=99.78  E-value=3.1e-18  Score=157.93  Aligned_cols=128  Identities=14%  Similarity=0.131  Sum_probs=105.4

Q ss_pred             ccCCCCCchhhHHhhCCCHHHHHHhhhc------CCCcccccCCCCChHHHHHHhcCC----hHHHHHHHhccCCCCCcc
Q 039828          212 IQDEQMNTPMHWAASVDHLEGVRFLYEI------NPDSVLQKNEEGLYPFHLASANGC----VPVMGEFLEKENMPHPNE  281 (626)
Q Consensus       212 ~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~------~~~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~g~~~~~~~  281 (626)
                      .+|..|.||||+|++.|+.++++.|+..      +++ .+.+|..|.||||+|+..|+    .+++++|++.|.+.+   
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin---   91 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA-LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN---   91 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh-hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC---
Confidence            4578889999999999999999887543      233 67788889999999999888    578888888765543   


Q ss_pred             cccC-CCchHHHHHHHcCChHHHHHHHHc-CCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828          282 LFNN-KGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG  347 (626)
Q Consensus       282 ~~d~-~g~t~Lh~A~~~~~~~i~~~Ll~~-~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g  347 (626)
                      .++. .|+||||+|+.+++.+++++|++. +    ++++.+|.+|.||||+|+..++.+++++|++.+
T Consensus        92 ~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g----~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         92 AQEMLEGDTALHLAAHRRDHDLAEWLCCQPG----IDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCC----CCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            3454 799999999999999999999874 5    778888999999999999999999999998876

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.76  E-value=2.7e-18  Score=156.05  Aligned_cols=133  Identities=23%  Similarity=0.348  Sum_probs=106.3

Q ss_pred             cccccccCCCCcHHHHHHhcCCCccccHHHHHHHH------hhCcccccccccCCCcHHHHHHHcCCH---HHHHHHHHc
Q 039828            4 TFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLA------RKYPFLITMQNSKGDTPLHVAARDGML---QTAKILVDC   74 (626)
Q Consensus         4 ~~~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll------~~~~~~l~~~d~~G~TpLh~Aa~~g~~---~iv~~Ll~~   74 (626)
                      .+.+.+|.+|.||||+||..|+   ..    +.+.      ...+.+++.+|.+|+||||+|+..|+.   +++++|++.
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~---~~----~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~   80 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGG---VT----DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW   80 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCC---HH----HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc
Confidence            4567888999999999999987   32    2222      122334667789999999999999986   468899999


Q ss_pred             cccCCCccchhhhHHHHhhc-cCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcC-CCCcccccCCCCCcHH
Q 039828           75 AKRMTSSSQIDVKFLMEMKN-VRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSE-DPNASYLMNVDCKSPL  152 (626)
Q Consensus        75 ~~~~~~~~~~~~~~~l~~~~-~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~-~~~~~~~~~~~g~tpL  152 (626)
                      |+++            +.++ ..|+||||+|+.       .++          .++++.|+++ +.+++ ..|..|+|||
T Consensus        81 gadi------------n~~~~~~g~T~Lh~A~~-------~~~----------~~i~~~Ll~~~g~d~n-~~~~~g~tpL  130 (154)
T PHA02736         81 GADI------------NGKERVFGNTPLHIAVY-------TQN----------YELATWLCNQPGVNME-ILNYAFKTPY  130 (154)
T ss_pred             CCCc------------cccCCCCCCcHHHHHHH-------hCC----------HHHHHHHHhCCCCCCc-cccCCCCCHH
Confidence            8865            3466 489999999999       888          9999999974 77776 7788999999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCC
Q 039828          153 YLAVESKNEDILEYILEALPV  173 (626)
Q Consensus       153 ~~A~~~g~~~~v~~Ll~~~~~  173 (626)
                      |+|+..|+.+++++|++.++.
T Consensus       131 ~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736        131 YVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             HHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999988763

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.75  E-value=2.4e-17  Score=141.85  Aligned_cols=145  Identities=21%  Similarity=0.127  Sum_probs=120.1

Q ss_pred             HHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhcc
Q 039828           16 LLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNV   95 (626)
Q Consensus        16 ~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~   95 (626)
                      .+-+|+..+.   ..  .|+.||+..++.++.+|.+|.||||.|+.+||.+||+.|+..|++..            .+..
T Consensus        66 l~lwaae~nr---l~--eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~------------a~T~  128 (228)
T KOG0512|consen   66 LLLWAAEKNR---LT--EVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE------------AKTN  128 (228)
T ss_pred             HHHHHHhhcc---HH--HHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcc------------cccc
Confidence            4678888887   77  99999999999999999999999999999999999999999999764            4788


Q ss_pred             CCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCC
Q 039828           96 RGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVND  175 (626)
Q Consensus        96 ~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  175 (626)
                      .|+||||-||.       ..|          .+++-.|+++|++++ .......||||+||.+.+....-.++-+.+-..
T Consensus       129 ~GWTPLhSAck-------WnN----------~~va~~LLqhgaDVn-A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~  190 (228)
T KOG0512|consen  129 EGWTPLHSACK-------WNN----------FEVAGRLLQHGADVN-AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIH  190 (228)
T ss_pred             cCccchhhhhc-------ccc----------hhHHHHHHhccCccc-ccccccchhhHHhhcccchHHHHHHHhhccccC
Confidence            99999999999       888          999999999999998 666778999999998877655444433333233


Q ss_pred             ccccccCCCCHHHHHHHhCC
Q 039828          176 DCDAKLEGKSPVKVAIELQK  195 (626)
Q Consensus       176 ~~~~~~~g~t~L~~A~~~g~  195 (626)
                      ....+..+.||+.+|-+.+-
T Consensus       191 pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  191 PGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hhhhcCccchHHHHHHHhhh
Confidence            34455568889888877653

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.74  E-value=6.3e-18  Score=153.66  Aligned_cols=133  Identities=17%  Similarity=0.077  Sum_probs=98.6

Q ss_pred             ccccCCCCCchhhHHhhCCCHHHHHHhhhcCC------CcccccCCCCChHHHHHHhcCChH---HHHHHHhccCCCCCc
Q 039828          210 LLIQDEQMNTPMHWAASVDHLEGVRFLYEINP------DSVLQKNEEGLYPFHLASANGCVP---VMGEFLEKENMPHPN  280 (626)
Q Consensus       210 ~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~------~~~~~~d~~g~tpLh~A~~~g~~~---~v~~Ll~~g~~~~~~  280 (626)
                      .+..|.+|.||||+|+..|+.  +.++...+.      ......|..|.||||+|+..|+.+   +++.|++.|.+.+  
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin--   85 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN--   85 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc--
Confidence            445677888888888888873  222221111      113346778888888888888764   5778888765443  


Q ss_pred             cccc-CCCchHHHHHHHcCChHHHHHHHHc-CCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccc
Q 039828          281 ELFN-NKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD  352 (626)
Q Consensus       281 ~~~d-~~g~t~Lh~A~~~~~~~i~~~Ll~~-~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~  352 (626)
                       .++ ..|+||||+|+..++.+++++|++. +    .+++.+|..|.||||+|+..++.+++++|+..| ++.+
T Consensus        86 -~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g----~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g-a~~~  153 (154)
T PHA02736         86 -GKERVFGNTPLHIAVYTQNYELATWLCNQPG----VNMEILNYAFKTPYYVACERHDAKMMNILRAKG-AQCK  153 (154)
T ss_pred             -ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCC----CCCccccCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCC
Confidence             345 4789999999999999999998874 5    778888999999999999999999999998888 6654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.74  E-value=2.4e-17  Score=151.31  Aligned_cols=137  Identities=12%  Similarity=0.089  Sum_probs=103.0

Q ss_pred             ccCCCCHHHHHHHhCCH----HHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHH---HHHhhhcCCCcccccC-CCC
Q 039828          180 KLEGKSPVKVAIELQKL----GLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEG---VRFLYEINPDSVLQKN-EEG  251 (626)
Q Consensus       180 ~~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~---v~~Ll~~~~~~~~~~d-~~g  251 (626)
                      +..+.+++|.|++.|+.    +++++|.+.+ ..++..|..|+||||+|+..|+.+.   +++|++.+++ ++.++ ..|
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g-~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-in~~d~~~g   94 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDG-HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD-INARELGTG   94 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcc-hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC-CCCCCCCCC
Confidence            34566777777777776    4444555555 5566778888888888888877543   7888888877 66676 478


Q ss_pred             ChHHHHHHhcCChHHHHHHHh-ccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCC
Q 039828          252 LYPFHLASANGCVPVMGEFLE-KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGN  325 (626)
Q Consensus       252 ~tpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~  325 (626)
                      .||||+|+..|+.+++++|+. .|.++   +.+|..|+||||+|+..++.+++++|++.+    ++++.++..|.
T Consensus        95 ~TpLh~A~~~g~~~iv~~Ll~~~gad~---~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g----a~~~~~~~~~~  162 (166)
T PHA02743         95 NTLLHIAASTKNYELAEWLCRQLGVNL---GAINYQHETAYHIAYKMRDRRMMEILRANG----AVCDDPLSIGL  162 (166)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhccCCCc---cCcCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcccCCc
Confidence            889999888888888888885 45444   345788889999999888888999988887    77777777664

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.73  E-value=2.6e-18  Score=159.26  Aligned_cols=134  Identities=27%  Similarity=0.364  Sum_probs=115.1

Q ss_pred             hCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHH
Q 039828          226 SVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTH  305 (626)
Q Consensus       226 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~  305 (626)
                      +.|+.-.|++-|+....+.+.-|..|.+|||+||+.|+..+++.|+.+|+..+..   +.-..||||+|+.+|+.++++.
T Consensus         9 regna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~t---nmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen    9 REGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNST---NMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             hcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccc---cCCCCcchhhhhhcccHHHHHH
Confidence            3444333444444444458888999999999999999999999999998665543   6667899999999999999999


Q ss_pred             HHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHH
Q 039828          306 ILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQ  367 (626)
Q Consensus       306 Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~  367 (626)
                      |++..    +++|+.++.|+||||+||.+|+..+.+-|+..| +.+++.|++|.||+|.|.-
T Consensus        86 ll~~k----advnavnehgntplhyacfwgydqiaedli~~g-a~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen   86 LLSRK----ADVNAVNEHGNTPLHYACFWGYDQIAEDLISCG-AAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             HHHHh----cccchhhccCCCchhhhhhhcHHHHHHHHHhcc-ceeeecccCCCCchhhhch
Confidence            99986    899999999999999999999999999999999 9999999999999998754

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.72  E-value=1.3e-16  Score=157.68  Aligned_cols=161  Identities=14%  Similarity=0.087  Sum_probs=109.1

Q ss_pred             ccccccCCCc-HHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCC
Q 039828           45 ITMQNSKGDT-PLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGV  123 (626)
Q Consensus        45 l~~~d~~G~T-pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~  123 (626)
                      +..+|..|.| +||.|+..|+.+++++|+++|++++...        ...+..|.||||+|+.       .++       
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~--------~~sd~~g~TpLh~Aa~-------~~~-------   82 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPF--------PLSENSKTNPLIYAID-------CDN-------   82 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccC--------cccCCCCCCHHHHHHH-------cCC-------
Confidence            4456777775 4556666688889999998888763200        0124578888888887       777       


Q ss_pred             CcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHH
Q 039828          124 TSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMH  203 (626)
Q Consensus       124 ~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  203 (626)
                         .++++.|+++|++++...+..|.||||+|+..|+.+++++|++.+++.  ...+..|.||||.|+..++.+++..+.
T Consensus        83 ---~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdi--n~kd~~G~TpL~~A~~~~~~~~~~~~~  157 (300)
T PHA02884         83 ---DDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADI--NIQTNDMVTPIELALMICNNFLAFMIC  157 (300)
T ss_pred             ---HHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence               888888888888877334556788888888888888888888877633  334556777777777777777665554


Q ss_pred             hcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCC
Q 039828          204 DKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINP  241 (626)
Q Consensus       204 ~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~  241 (626)
                      +..      .+..+.+|++++   ++.++++.|+.+..
T Consensus       158 ~~~------~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        158 DNE------ISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             CCc------ccccccChhhhh---ccHHHHHHHHHHHH
Confidence            221      355556666654   35677777776643

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.72  E-value=1e-16  Score=158.45  Aligned_cols=146  Identities=14%  Similarity=0.157  Sum_probs=100.8

Q ss_pred             CHHHHHHHhCCHHHHHHHHhcCCcccccc----CCCCCchhhHHhhCCCHHHHHHhhhcCCCccccc-CCCCChHHHHHH
Q 039828          185 SPVKVAIELQKLGLLKMMHDKQPALLLIQ----DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQK-NEEGLYPFHLAS  259 (626)
Q Consensus       185 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~----d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~-d~~g~tpLh~A~  259 (626)
                      ++||.|+..|+.++++.|++.| ++++.+    +..|.||||+|+..++.+++++|+++|++ ++.. +..|.||||.|+
T Consensus        35 ~lL~~A~~~~~~eivk~LL~~G-AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-VN~~~~~~g~TpLh~Aa  112 (300)
T PHA02884         35 NILYSSIKFHYTDIIDAILKLG-ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-VNRYAEEAKITPLYISV  112 (300)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC-CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cCcccCCCCCCHHHHHH
Confidence            3455566666777777777776 455554    34677888888888888888888887777 5553 456778888888


Q ss_pred             hcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHH
Q 039828          260 ANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFV  339 (626)
Q Consensus       260 ~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~i  339 (626)
                      ..|+.+++++|++.|++++.   +|..|.||||+|+..++.+++..+...         ..+..+.+|++++   ++.++
T Consensus       113 ~~~~~eivklLL~~GAdin~---kd~~G~TpL~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~---~n~ei  177 (300)
T PHA02884        113 LHGCLKCLEILLSYGADINI---QTNDMVTPIELALMICNNFLAFMICDN---------EISNFYKHPKKIL---INFDI  177 (300)
T ss_pred             HcCCHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHhCChhHHHHhcCC---------cccccccChhhhh---ccHHH
Confidence            88888888888877755544   367778888888777777666444321         2466677777764   36778


Q ss_pred             HHHHhhCC
Q 039828          340 AVILGKDG  347 (626)
Q Consensus       340 v~~Ll~~g  347 (626)
                      +++|+.++
T Consensus       178 ~~~Lish~  185 (300)
T PHA02884        178 LKILVSHF  185 (300)
T ss_pred             HHHHHHHH
Confidence            88887776

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.67  E-value=1.6e-14  Score=153.18  Aligned_cols=192  Identities=20%  Similarity=0.194  Sum_probs=154.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCC-------CCCccccccCCCCHHHHHHHh---CCHHHHHHHHhcCCcccccc----C
Q 039828          149 KSPLYLAVESKNEDILEYILEALP-------VNDDCDAKLEGKSPVKVAIEL---QKLGLLKMMHDKQPALLLIQ----D  214 (626)
Q Consensus       149 ~tpL~~A~~~g~~~~v~~Ll~~~~-------~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~----d  214 (626)
                      +.++..|...+..+....++..+.       +.+...+...|+|.||.|..+   ++.++++.|++..|..++..    .
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            478888888888888887776542       234445566799999999984   45689999999988776633    3


Q ss_pred             CCCCchhhHHhhCCCHHHHHHhhhcCCCccccc---------C--------------CCCChHHHHHHhcCChHHHHHHH
Q 039828          215 EQMNTPMHWAASVDHLEGVRFLYEINPDSVLQK---------N--------------EEGLYPFHLASANGCVPVMGEFL  271 (626)
Q Consensus       215 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~---------d--------------~~g~tpLh~A~~~g~~~~v~~Ll  271 (626)
                      ..|.||||.|+.+.+.++|++|++.++| ++.+         |              ..|+.||..||-.++.|++++|+
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gAD-V~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGAD-VHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCc-hhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            4699999999999999999999999988 3221         1              13678999999999999999999


Q ss_pred             hccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhC
Q 039828          272 EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD  346 (626)
Q Consensus       272 ~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~  346 (626)
                      ++|++|+.   +|.+|+|+||..+.+-..++..++++.|+.  .+...+|++|-|||-+|++.|..++.+.+++.
T Consensus       261 ~~gAd~~a---qDS~GNTVLH~lVi~~~~~My~~~L~~ga~--~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  261 AHGADPNA---QDSNGNTVLHMLVIHFVTEMYDLALELGAN--ALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             hcCCCCCc---cccCCChHHHHHHHHHHHHHHHHHHhcCCC--ccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            88877755   488999999999988888888899988843  44777888999999999999999988888876

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.62  E-value=5.1e-15  Score=156.86  Aligned_cols=216  Identities=19%  Similarity=0.195  Sum_probs=153.9

Q ss_pred             cHHHHHHhcCCCccccHHHHHHHHhhC--------cccccccccCCCcHHHHHHH---cCCHHHHHHHHHccccCCCccc
Q 039828           15 TLLHIAAAGSIRNHENMAMATTLARKY--------PFLITMQNSKGDTPLHVAAR---DGMLQTAKILVDCAKRMTSSSQ   83 (626)
Q Consensus        15 t~LH~Aa~~g~~~~~~~~~v~~Ll~~~--------~~~l~~~d~~G~TpLh~Aa~---~g~~~iv~~Ll~~~~~~~~~~~   83 (626)
                      .++..|...+.   .+  ....++...        ...++.+..-|+|.||.|..   .++.++++.|++..+....   
T Consensus       103 ~~~~~~~~~~~---l~--~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lin---  174 (782)
T KOG3676|consen  103 DALFIADSEGA---LS--DLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLIN---  174 (782)
T ss_pred             hhhhhcccccc---HH--HHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhh---
Confidence            45556655555   44  444444433        24577888999999999988   4556899999987654321   


Q ss_pred             hhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHH
Q 039828           84 IDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDI  163 (626)
Q Consensus        84 ~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  163 (626)
                          .+-......|.||||.|+.       +.+          .++|++|++.|++++.             -..|+.=.
T Consensus       175 ----d~~~~eeY~GqSaLHiAIv-------~~~----------~~~V~lLl~~gADV~a-------------Ra~G~FF~  220 (782)
T KOG3676|consen  175 ----DIYTSEEYYGQSALHIAIV-------NRD----------AELVRLLLAAGADVHA-------------RACGAFFC  220 (782)
T ss_pred             ----hhhhhHhhcCcchHHHHHH-------hcc----------HHHHHHHHHcCCchhh-------------HhhccccC
Confidence                1122345579999999998       888          8999999999998862             11111100


Q ss_pred             HHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCC-
Q 039828          164 LEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD-  242 (626)
Q Consensus       164 v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~-  242 (626)
                      .+.--...+..+....-..|+.||..|+-.++.+++++|++++ ++++.+|.+|+|.||..+.+-..++...+++++++ 
T Consensus       221 ~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~g-Ad~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~  299 (782)
T KOG3676|consen  221 PDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHG-ADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANA  299 (782)
T ss_pred             cccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcC-CCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            0000000011122223456889999999999999999999977 88999999999999999988888899999998876 


Q ss_pred             cccccCCCCChHHHHHHhcCChHHHHHHHhc
Q 039828          243 SVLQKNEEGLYPFHLASANGCVPVMGEFLEK  273 (626)
Q Consensus       243 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  273 (626)
                      .....|..|.|||.+|++.|..++.+.++++
T Consensus       300 l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  300 LEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            2456788999999999999999999999986

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.61  E-value=5.4e-16  Score=143.96  Aligned_cols=131  Identities=25%  Similarity=0.344  Sum_probs=108.6

Q ss_pred             CCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhc
Q 039828          194 QKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK  273 (626)
Q Consensus       194 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  273 (626)
                      |+.-.++.-++....+.+.-|..|.+|||+|++.|+..+++.|+..|+- ++..+....||||+|+..|+.++++.|+++
T Consensus        11 gna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkll~~   89 (448)
T KOG0195|consen   11 GNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKLLSR   89 (448)
T ss_pred             CCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHHHHH
Confidence            3333344445555566777888999999999999999999999999887 788888888999999999999999999986


Q ss_pred             cCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHH
Q 039828          274 ENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA  332 (626)
Q Consensus       274 g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~  332 (626)
                      .++.   +.++..|.||||+||..|...+.+-|+..|    +.++..+++|.|||..|-
T Consensus        90 kadv---navnehgntplhyacfwgydqiaedli~~g----a~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   90 KADV---NAVNEHGNTPLHYACFWGYDQIAEDLISCG----AAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hccc---chhhccCCCchhhhhhhcHHHHHHHHHhcc----ceeeecccCCCCchhhhc
Confidence            6444   445889999999999999999999999998    888999999999998764

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.60  E-value=4.4e-15  Score=121.29  Aligned_cols=89  Identities=36%  Similarity=0.468  Sum_probs=74.1

Q ss_pred             HHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHh
Q 039828          255 FHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALY  334 (626)
Q Consensus       255 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~  334 (626)
                      ||.|++.|+.++++.|++.+...+      . |+||||+|+.+|+.+++++|++.+    .+++.+|..|+||||+|+..
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~------~-~~~~l~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN------L-GNTALHYAAENGNLEIVKLLLENG----ADINSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT------S-SSBHHHHHHHTTTHHHHHHHHHTT----TCTT-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC------C-CCCHHHHHHHcCCHHHHHHHHHhc----ccccccCCCCCCHHHHHHHc
Confidence            688999999999999998542221      1 888999999999999999999988    78889999999999999999


Q ss_pred             CCHHHHHHHhhCCCCcccccc
Q 039828          335 GHYFVAVILGKDGRAESDIIN  355 (626)
Q Consensus       335 ~~~~iv~~Ll~~g~~d~~~~n  355 (626)
                      ++.+++++|+++| ++++.+|
T Consensus        70 ~~~~~~~~Ll~~g-~~~~~~n   89 (89)
T PF12796_consen   70 GNLEIVKLLLEHG-ADVNIRN   89 (89)
T ss_dssp             THHHHHHHHHHTT-T-TTSS-
T ss_pred             CCHHHHHHHHHcC-CCCCCcC
Confidence            9999999999998 8888775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.57  E-value=4.3e-14  Score=123.11  Aligned_cols=123  Identities=25%  Similarity=0.431  Sum_probs=82.1

Q ss_pred             ccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhH
Q 039828            9 TSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKF   88 (626)
Q Consensus         9 ~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~   88 (626)
                      .|.+|.||||+|+..|+   .+  ++++|++.++. .+..+..|.||||+|+..++.+++++|++.++..          
T Consensus         3 ~~~~g~t~l~~a~~~~~---~~--~i~~li~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~----------   66 (126)
T cd00204           3 RDEDGRTPLHLAASNGH---LE--VVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV----------   66 (126)
T ss_pred             cCcCCCCHHHHHHHcCc---HH--HHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc----------
Confidence            45667777777777777   66  77777776654 3566677777777777777777777777766432          


Q ss_pred             HHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHH
Q 039828           89 LMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYI  167 (626)
Q Consensus        89 ~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  167 (626)
                        +..+..|.||+|+|+.       .++          .++++.|++++.+.. ..+..|.||+++|...++.+++++|
T Consensus        67 --~~~~~~~~~~l~~a~~-------~~~----------~~~~~~L~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          67 --NARDKDGNTPLHLAAR-------NGN----------LDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             --cccCCCCCCHHHHHHH-------cCc----------HHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcCCHHHHHHh
Confidence              2355666677777776       666          677777777665554 4456666777777766666666665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.57  E-value=5.3e-14  Score=122.49  Aligned_cols=124  Identities=40%  Similarity=0.540  Sum_probs=91.9

Q ss_pred             cCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHH
Q 039828          213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH  292 (626)
Q Consensus       213 ~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh  292 (626)
                      +|..|.||||+|+..++.+++++|++.+.+ ....+..|.+|+|.|+..++.++++.|++.+..   .+..+..|.||+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~l~   78 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD---VNARDKDGNTPLH   78 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHH
Confidence            456677888888888888888888777766 466777777888888888888888888875532   2334667778888


Q ss_pred             HHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHh
Q 039828          293 VAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILG  344 (626)
Q Consensus       293 ~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll  344 (626)
                      +|+..++.+++++|++.+    .+.+..|..|.||+|+|...++.+++++|+
T Consensus        79 ~a~~~~~~~~~~~L~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          79 LAARNGNLDVVKLLLKHG----ADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHcCcHHHHHHHHHcC----CCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            888888888888887776    566677777888888888887777777764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.49  E-value=1.4e-13  Score=112.34  Aligned_cols=82  Identities=30%  Similarity=0.395  Sum_probs=47.1

Q ss_pred             hhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCCh
Q 039828          221 MHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRD  300 (626)
Q Consensus       221 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  300 (626)
                      ||+|++.|+.+++++|++.+.+ .+.    |.||||+|+..|+.+++++|++.|.+++   .+|.+|+||||+|+.+++.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~-~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD-INL----GNTALHYAAENGNLEIVKLLLENGADIN---SQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST-TTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT----BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC-CCC----CCCHHHHHHHcCCHHHHHHHHHhccccc---ccCCCCCCHHHHHHHcCCH
Confidence            4566666666666666665443 221    5566666666666666666666554332   2355666666666666666


Q ss_pred             HHHHHHHHcC
Q 039828          301 VSVTHILEAS  310 (626)
Q Consensus       301 ~i~~~Ll~~~  310 (626)
                      +++++|+++|
T Consensus        73 ~~~~~Ll~~g   82 (89)
T PF12796_consen   73 EIVKLLLEHG   82 (89)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            6666666665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.42  E-value=6.9e-12  Score=121.61  Aligned_cols=135  Identities=32%  Similarity=0.319  Sum_probs=115.5

Q ss_pred             ccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCC-----hHHHHHHHhccCCCCCccc
Q 039828          208 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGC-----VPVMGEFLEKENMPHPNEL  282 (626)
Q Consensus       208 ~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-----~~~v~~Ll~~g~~~~~~~~  282 (626)
                      ......+..+.+++|.++..+..+.+++++..+.+ ++.++..|.||||+|+..++     .++++.|++.|........
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  142 (235)
T COG0666          64 RHLAARDLDGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL  142 (235)
T ss_pred             cccccCCccccCHHHHHHHcCcHHHHHHHHHcCCC-cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccc
Confidence            33445667788999999999999999999999988 48899999999999999999     8999999997753245555


Q ss_pred             ccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828          283 FNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG  347 (626)
Q Consensus       283 ~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g  347 (626)
                      +|..|+||||+|+..|+.+++++|++.+    ++++.++..|.|++|.|+..++.++++.++..+
T Consensus       143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~~----~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         143 RDEDGNTPLHWAALNGDADIVELLLEAG----ADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cCCCCCchhHHHHHcCchHHHHHHHhcC----CCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            6889999999999999999999999997    778888999999999999999999999998765

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.42  E-value=6.1e-13  Score=102.45  Aligned_cols=107  Identities=23%  Similarity=0.261  Sum_probs=94.7

Q ss_pred             hHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHH
Q 039828          253 YPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA  332 (626)
Q Consensus       253 tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~  332 (626)
                      ..+.++.++|..+-|+..+..|  .+..+  ...|++|||+|+..|+.+++++|+..|    ++++.+|+.|-|||--|+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g--~nVn~--~~ggR~plhyAAD~GQl~ilefli~iG----A~i~~kDKygITPLLsAv   75 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEG--LNVNE--IYGGRTPLHYAADYGQLSILEFLISIG----ANIQDKDKYGITPLLSAV   75 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcc--ccHHH--HhCCcccchHhhhcchHHHHHHHHHhc----cccCCccccCCcHHHHHH
Confidence            4577899999999999988855  22222  347999999999999999999999999    999999999999999999


Q ss_pred             HhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHh
Q 039828          333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ  368 (626)
Q Consensus       333 ~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~  368 (626)
                      ..||.++|++|++.| +|...+-.+|.+.++.+.++
T Consensus        76 wEGH~~cVklLL~~G-Adrt~~~PdG~~~~eate~e  110 (117)
T KOG4214|consen   76 WEGHRDCVKLLLQNG-ADRTIHAPDGTALIEATEEE  110 (117)
T ss_pred             HHhhHHHHHHHHHcC-cccceeCCCchhHHhhccHH
Confidence            999999999999999 99999999999999877654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.31  E-value=1.7e-12  Score=95.11  Aligned_cols=51  Identities=41%  Similarity=0.520  Sum_probs=31.5

Q ss_pred             hhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHH
Q 039828          314 DKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA  365 (626)
Q Consensus       314 ~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la  365 (626)
                      ..++|.+|..|+||||+|++.|+.+++++|++.| ++++++|++|+||+|+|
T Consensus         6 ~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g-~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    6 PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG-ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc-CCCCCCcCCCCCHHHhC
Confidence            3778899999999999999999999999999777 99999999999999986

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.31  E-value=2.6e-11  Score=117.52  Aligned_cols=128  Identities=30%  Similarity=0.355  Sum_probs=112.2

Q ss_pred             ccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCC-----hHHHHHHHHcCCcchhhcc
Q 039828          244 VLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGR-----DVSVTHILEASDLTDKLIN  318 (626)
Q Consensus       244 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~i~~~Ll~~~~~~~~~in  318 (626)
                      ....+..+.+++|.++..+..+++++++..|.++   +.++..|.|+||+|+.+++     .+++++|++.+.. ....+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~-~~~~~  141 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV---NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD-LDVNN  141 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc---ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC-CCCcc
Confidence            4456777999999999999999999999966544   5569999999999999999     9999999999821 02677


Q ss_pred             cCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccccc
Q 039828          319 EMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF  376 (626)
Q Consensus       319 ~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~  376 (626)
                      .+|..|+||||+|+..|+.+++++|++.+ ++++.+|..|.|+++.|...++..+...
T Consensus       142 ~~~~~g~tpl~~A~~~~~~~~~~~ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~  198 (235)
T COG0666         142 LRDEDGNTPLHWAALNGDADIVELLLEAG-ADPNSRNSYGVTALDPAAKNGRIELVKL  198 (235)
T ss_pred             ccCCCCCchhHHHHHcCchHHHHHHHhcC-CCCcccccCCCcchhhhcccchHHHHHH
Confidence            77999999999999999999999999999 9999999999999999999877665554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.30  E-value=4.5e-12  Score=92.36  Aligned_cols=54  Identities=35%  Similarity=0.462  Sum_probs=45.4

Q ss_pred             CCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 039828           13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILV   72 (626)
Q Consensus        13 g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll   72 (626)
                      |.|+||+||+.|+   .+  ++++|++.+.+ ++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~---~~--~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGN---LE--IVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT----HH--HHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCC---HH--HHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            7899999999999   89  99999999766 8999999999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.25  E-value=5.2e-12  Score=92.53  Aligned_cols=56  Identities=34%  Similarity=0.454  Sum_probs=32.1

Q ss_pred             HHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHH
Q 039828           37 LARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA  104 (626)
Q Consensus        37 Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A  104 (626)
                      ||+.++.+++.+|..|+||||+||.+|+.++|++|++.++++            +.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~------------~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP------------NAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T------------T---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC------------CCCcCCCCCHHHhC
Confidence            466676779999999999999999999999999999888765            56999999999987

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.24  E-value=1.6e-11  Score=89.47  Aligned_cols=54  Identities=41%  Similarity=0.490  Sum_probs=42.3

Q ss_pred             CchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHh
Q 039828          287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILG  344 (626)
Q Consensus       287 g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll  344 (626)
                      |+||||+|+..|+.+++++|++.+    .++|.+|.+|+||||+|++.|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~----~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG----ADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT----SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678999999999999999999887    778888999999999999999999998885

...

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.22  E-value=5.3e-11  Score=91.85  Aligned_cols=100  Identities=18%  Similarity=0.222  Sum_probs=62.6

Q ss_pred             HHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHH
Q 039828          187 VKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPV  266 (626)
Q Consensus       187 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~  266 (626)
                      +.+++.+|..+-|+.....+ .+++..- .|++|||+|+..|+.+++++|+..|++ ++.+|+.|-|||..|++.||.++
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g-~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEG-LNVNEIY-GGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             HhhhhccCcHHHHHHHHHcc-ccHHHHh-CCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHhhHHH
Confidence            44566666666666666665 3343322 566777777777777777777777666 66667777777777777777777


Q ss_pred             HHHHHhccCCCCCcccccCCCchHHH
Q 039828          267 MGEFLEKENMPHPNELFNNKGQNILH  292 (626)
Q Consensus       267 v~~Ll~~g~~~~~~~~~d~~g~t~Lh  292 (626)
                      |++|++.|++...   +..+|.+.+.
T Consensus        83 VklLL~~GAdrt~---~~PdG~~~~e  105 (117)
T KOG4214|consen   83 VKLLLQNGADRTI---HAPDGTALIE  105 (117)
T ss_pred             HHHHHHcCcccce---eCCCchhHHh
Confidence            7777766644332   2445555443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.19  E-value=7.5e-11  Score=131.55  Aligned_cols=110  Identities=24%  Similarity=0.249  Sum_probs=71.9

Q ss_pred             chhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcC
Q 039828          219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKG  298 (626)
Q Consensus       219 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~  298 (626)
                      +.|+.|+..|+.+.++.|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|++++   .+|..|+||||+|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn---~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT---LLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC---CCCCCCCCHHHHHHHCC
Confidence            356677777777777777777766 66667777777777777777777777777664443   34667777777777777


Q ss_pred             ChHHHHHHHHcC---CcchhhcccCCCCCCCHHHHHH
Q 039828          299 RDVSVTHILEAS---DLTDKLINEMDDDGNTPLHLAA  332 (626)
Q Consensus       299 ~~~i~~~Ll~~~---~~~~~~in~~d~~G~TpLhlA~  332 (626)
                      +.+++++|++++   ...+++.+..+..|.+|+..+.
T Consensus       160 ~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        160 FREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             cHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            777777777661   1112555556666666655443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.14  E-value=3e-10  Score=106.14  Aligned_cols=123  Identities=20%  Similarity=0.141  Sum_probs=97.5

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcC
Q 039828          183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG  262 (626)
Q Consensus       183 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  262 (626)
                      -..||.-++..+..+-...||..- ..++.+|.+|.|+|..|+..|+.+++++|++.++|....++..+.||||.|+..|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~v-r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTV-RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHh-hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            355677777777777777777653 5577888888888888888888888888888888866677778888888888888


Q ss_pred             ChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHc
Q 039828          263 CVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA  309 (626)
Q Consensus       263 ~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~  309 (626)
                      +.++.+.|++.|+.+..+   +.-|+|+-..|+.-|+.++|..+-.+
T Consensus        91 n~dvcrllldaGa~~~~v---NsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMYLV---NSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHhccCccccc---cchhhhHHHHHHHhcchHHHHHHhcc
Confidence            888888888888777665   67788888888888888888766443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.09  E-value=4.8e-10  Score=125.18  Aligned_cols=104  Identities=20%  Similarity=0.167  Sum_probs=86.1

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChH
Q 039828          186 PVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVP  265 (626)
Q Consensus       186 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  265 (626)
                      .|+.|+..|+.+.++.|++.+ .+++.+|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~G-adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGG-ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHH
Confidence            377888999999999999887 67888899999999999999999999999999888 7888999999999999999999


Q ss_pred             HHHHHHhc-------cCCCCCcccccCCCchHHHHH
Q 039828          266 VMGEFLEK-------ENMPHPNELFNNKGQNILHVA  294 (626)
Q Consensus       266 ~v~~Ll~~-------g~~~~~~~~~d~~g~t~Lh~A  294 (626)
                      ++++|+++       |+++..   .+..|.+++..+
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~---~~~~g~~~~~~~  195 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKP---DSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCc---cccCCCCccchh
Confidence            99999986       333333   355677765543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.08  E-value=2.9e-10  Score=114.38  Aligned_cols=109  Identities=26%  Similarity=0.256  Sum_probs=94.2

Q ss_pred             ChHHH---HHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHH
Q 039828          252 LYPFH---LASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPL  328 (626)
Q Consensus       252 ~tpLh---~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpL  328 (626)
                      ..||-   -|+..|..|+|+.++..-.+|...   +..|-|+||-|+..|+++||++|++.|    +++|..|.+|+|||
T Consensus       548 fnPLaLLLDaaLeGEldlVq~~i~ev~DpSqp---NdEGITaLHNAiCaghyeIVkFLi~~g----anVNa~DSdGWTPL  620 (752)
T KOG0515|consen  548 FNPLALLLDAALEGELDLVQRIIYEVTDPSQP---NDEGITALHNAICAGHYEIVKFLIEFG----ANVNAADSDGWTPL  620 (752)
T ss_pred             cchHHHHHhhhhcchHHHHHHHHHhhcCCCCC---CccchhHHhhhhhcchhHHHHHHHhcC----CcccCccCCCCchh
Confidence            45543   488899999999998755555443   788999999999999999999999998    99999999999999


Q ss_pred             HHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHH
Q 039828          329 HLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQ  367 (626)
Q Consensus       329 hlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~  367 (626)
                      |.|+.+++..+++.|++.|.+-.-..-.++.||.+-..+
T Consensus       621 HCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee  659 (752)
T KOG0515|consen  621 HCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEE  659 (752)
T ss_pred             hhhhhcCchHHHHHHHhccceEEeeecccccchhhhcch
Confidence            999999999999999999966666667789999886654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.07  E-value=8.8e-10  Score=103.11  Aligned_cols=122  Identities=20%  Similarity=0.198  Sum_probs=106.5

Q ss_pred             CCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHH
Q 039828          217 MNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAK  296 (626)
Q Consensus       217 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~  296 (626)
                      -..||.-+..+++.+....||+.-.. ++..|..|.++|..|+..|+.+.++.|++.|++.+..  ++..+.||||.|+.
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~-vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~--qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQ-VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDK--QHGTLYTPLMFAAL   88 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhh-hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc--cccccccHHHHHHH
Confidence            35789999999999999999987444 7889999999999999999999999999988766654  47889999999999


Q ss_pred             cCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhh
Q 039828          297 KGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGK  345 (626)
Q Consensus       297 ~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~  345 (626)
                      +|+.++.++|++.|    +.....+.-|+|+-.+|+.-|+.++|..+-.
T Consensus        89 SGn~dvcrllldaG----a~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAG----ARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             cCCchHHHHHHhcc----CccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            99999999999998    6667778889999999999999998877643

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.05  E-value=5.1e-10  Score=112.68  Aligned_cols=117  Identities=17%  Similarity=0.106  Sum_probs=83.9

Q ss_pred             HHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCC
Q 039828           58 VAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSED  137 (626)
Q Consensus        58 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~  137 (626)
                      -|+..|.+|+|+..+....|+            ...|.+|-|+||.|+.       -||          ++||++|++.|
T Consensus       556 DaaLeGEldlVq~~i~ev~Dp------------SqpNdEGITaLHNAiC-------agh----------yeIVkFLi~~g  606 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEVTDP------------SQPNDEGITALHNAIC-------AGH----------YEIVKFLIEFG  606 (752)
T ss_pred             hhhhcchHHHHHHHHHhhcCC------------CCCCccchhHHhhhhh-------cch----------hHHHHHHHhcC
Confidence            477778888888877766554            2367778888888877       777          88888888888


Q ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHH--hCCHHHHHHHHhc
Q 039828          138 PNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIE--LQKLGLLKMMHDK  205 (626)
Q Consensus       138 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~  205 (626)
                      .+++ ..|.+|+||||+|+.+++..+++.|.+.|+..-. ..-.++.|+...+-.  .|..+|.++|-..
T Consensus       607 anVN-a~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfA-sTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  607 ANVN-AADSDGWTPLHCAASCNNVPMCKQLVESGAAVFA-STLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             Cccc-CccCCCCchhhhhhhcCchHHHHHHHhccceEEe-eecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            8887 7788888888888888888888888887764321 222356676665543  4667777777654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.63  E-value=1.3e-07  Score=96.18  Aligned_cols=108  Identities=22%  Similarity=0.275  Sum_probs=95.5

Q ss_pred             HHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhc
Q 039828           34 ATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKK  113 (626)
Q Consensus        34 v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~  113 (626)
                      ++.....+.+ +-.++.+..|.||+|+..|+-|+|+|++++++          .+++++.|..|.|+||.|+.       
T Consensus       882 lqE~h~~gg~-ll~~~~~~~sllh~a~~tg~~eivkyildh~p----------~elld~~de~get~lhkaa~-------  943 (1004)
T KOG0782|consen  882 LQETHLNGGS-LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGP----------SELLDMADETGETALHKAAC-------  943 (1004)
T ss_pred             HHHHHhcCCc-eEeeCcchhhHHHHHHhcCChHHHHHHHhcCC----------HHHHHHHhhhhhHHHHHHHH-------
Confidence            4444445555 56688999999999999999999999999986          56899999999999999998       


Q ss_pred             cCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 039828          114 DKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEA  170 (626)
Q Consensus       114 ~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  170 (626)
                      .++          ..+..+|++.|+.+. ..|..|.||-..|-+.|+.++..||-+.
T Consensus       944 ~~~----------r~vc~~lvdagasl~-ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  944 QRN----------RAVCQLLVDAGASLR-KTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hcc----------hHHHHHHHhcchhhe-ecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            888          899999999999987 8899999999999999999999998764

>PF13606 Ank_3: Ankyrin repeat

Probab=98.59  E-value=5.9e-08  Score=60.41  Aligned_cols=28  Identities=36%  Similarity=0.688  Sum_probs=25.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHccccC
Q 039828           51 KGDTPLHVAARDGMLQTAKILVDCAKRM   78 (626)
Q Consensus        51 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~   78 (626)
                      +|+||||+||+.|+.|+|++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            5899999999999999999999998875

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.57  E-value=4.8e-08  Score=103.69  Aligned_cols=95  Identities=22%  Similarity=0.314  Sum_probs=77.5

Q ss_pred             HHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCC-CCCCHHHHHHHhCCHHHHHHHhh
Q 039828          267 MGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDD-DGNTPLHLAALYGHYFVAVILGK  345 (626)
Q Consensus       267 v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~-~G~TpLhlA~~~~~~~iv~~Ll~  345 (626)
                      ++-++.. .+.+..+.+|..|+|+||+|+..++.+++++|+++|    ++++.+|. .|.||||-|...|+.+++-+|+.
T Consensus        33 lk~F~~k-~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhG----idv~vqD~ESG~taLHRaiyyG~idca~lLL~  107 (1267)
T KOG0783|consen   33 LKGFSEK-SCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHG----IDVFVQDEESGYTALHRAIYYGNIDCASLLLS  107 (1267)
T ss_pred             HHHHHHH-hhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcC----ceeeeccccccchHhhHhhhhchHHHHHHHHh
Confidence            3334433 445556777888999999998888889999999888    88888886 68899999999999999988988


Q ss_pred             CCCCcccccccCCCCHHHHHHH
Q 039828          346 DGRAESDIINFYGQTAYDIAEQ  367 (626)
Q Consensus       346 ~g~~d~~~~n~~g~tpl~la~~  367 (626)
                      +| +...++|++|..||++..+
T Consensus       108 ~g-~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  108 KG-RSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             cC-CceEEecccCCCHHHHHhh
Confidence            88 8888899999999988776

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.51  E-value=2.2e-07  Score=94.60  Aligned_cols=118  Identities=24%  Similarity=0.207  Sum_probs=97.0

Q ss_pred             HHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhC
Q 039828          256 HLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYG  335 (626)
Q Consensus       256 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~  335 (626)
                      .-|+..++.--++.....|   ...-.++.+..+.||+|++.|+.++++|+++++  +...++..|+.|.|+||-|+-.+
T Consensus       871 l~av~~~D~~klqE~h~~g---g~ll~~~~~~~sllh~a~~tg~~eivkyildh~--p~elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNG---GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHG--PSELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcC---CceEeeCcchhhHHHHHHhcCChHHHHHHHhcC--CHHHHHHHhhhhhHHHHHHHHhc
Confidence            3455555544444444444   233345788899999999999999999999998  34678889999999999999999


Q ss_pred             CHHHHHHHhhCCCCcccccccCCCCHHHHHHHhccccccccccc
Q 039828          336 HYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSEN  379 (626)
Q Consensus       336 ~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~~~~  379 (626)
                      +..+..+|++.| +.....|..|.||-+-|.+.+..++..|++.
T Consensus       946 ~r~vc~~lvdag-asl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  946 NRAVCQLLVDAG-ASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             chHHHHHHHhcc-hhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            999999999999 9999999999999999999998888777543

>PF13606 Ank_3: Ankyrin repeat

Probab=98.48  E-value=1.7e-07  Score=58.31  Aligned_cols=29  Identities=45%  Similarity=0.645  Sum_probs=23.5

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHhhCCCCccc
Q 039828          323 DGNTPLHLAALYGHYFVAVILGKDGRAESD  352 (626)
Q Consensus       323 ~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~  352 (626)
                      +|+||||+|++.|+.+++++|+++| +|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~g-advn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHG-ADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcC-CCCC
Confidence            4788888888888888888888887 7776

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.46  E-value=2e-07  Score=59.88  Aligned_cols=33  Identities=45%  Similarity=0.577  Sum_probs=27.1

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHhhCCCCccccccc
Q 039828          323 DGNTPLHLAALYGHYFVAVILGKDGRAESDIINF  356 (626)
Q Consensus       323 ~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~  356 (626)
                      +|+||||+|+..++.+++++|+++| ++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHG-ADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTT-SCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCc-CCCCCCCC
Confidence            4788888888888888888888888 88887764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.42  E-value=8.3e-08  Score=95.94  Aligned_cols=90  Identities=24%  Similarity=0.216  Sum_probs=82.2

Q ss_pred             cCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHH
Q 039828          284 NNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYD  363 (626)
Q Consensus       284 d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~  363 (626)
                      +.++...+.+|++.|....++-+.-.|    .+++.+|.+.+|+||.|+..|+.+++++|++...++++.+|.+|+||||
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g----~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlD  578 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQG----MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLD  578 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhc----ccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcch
Confidence            455677899999999999999888887    8899999999999999999999999999999888999999999999999


Q ss_pred             HHHHhccccccccc
Q 039828          364 IAEQQYAKIIPEFS  377 (626)
Q Consensus       364 la~~~~~~~i~~~~  377 (626)
                      -|...++.++++++
T Consensus       579 dA~~F~h~~v~k~L  592 (622)
T KOG0506|consen  579 DAKHFKHKEVVKLL  592 (622)
T ss_pred             HhHhcCcHHHHHHH
Confidence            99999888877764

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.31  E-value=2.8e-07  Score=98.01  Aligned_cols=85  Identities=24%  Similarity=0.287  Sum_probs=76.0

Q ss_pred             cccccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccc-cCCCcHHHHHHHcCCHHHHHHHHHccccCCCcc
Q 039828            4 TFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQN-SKGDTPLHVAARDGMLQTAKILVDCAKRMTSSS   82 (626)
Q Consensus         4 ~~~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d-~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~   82 (626)
                      ++.++.|.-|+|+||+|+..|.   .+  ++++|+++|.+ +..+| ..|+||||.|..+|++|++-.|+.+|..     
T Consensus        43 n~anikD~~GR~alH~~~S~~k---~~--~l~wLlqhGid-v~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-----  111 (1267)
T KOG0783|consen   43 NLANIKDRYGRTALHIAVSENK---NS--FLRWLLQHGID-VFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-----  111 (1267)
T ss_pred             hhhhHHHhhccceeeeeeccch---hH--HHHHHHhcCce-eeeccccccchHhhHhhhhchHHHHHHHHhcCCc-----
Confidence            4678999999999999999999   88  99999999877 66666 5699999999999999999999999974     


Q ss_pred             chhhhHHHHhhccCCCCHHHHHHH
Q 039828           83 QIDVKFLMEMKNVRGNTALHEALN  106 (626)
Q Consensus        83 ~~~~~~~l~~~~~~g~T~Lh~A~~  106 (626)
                             +.++|++|.+||...++
T Consensus       112 -------L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 -------LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             -------eEEecccCCCHHHHHhh
Confidence                   35799999999998877

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.29  E-value=7.6e-07  Score=89.23  Aligned_cols=93  Identities=25%  Similarity=0.262  Sum_probs=54.0

Q ss_pred             CCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCH
Q 039828          248 NEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTP  327 (626)
Q Consensus       248 d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~Tp  327 (626)
                      +.++..++++|++.|++..++.+.-.|.   ..+..|.+.+|+||+|+..|+.+++++|++..   ..+++.+|..|+||
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~---D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~---kv~~~~kDRw~rtP  576 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGM---DLETKDYDDRTALHVAAAEGHVEVVKFLLNAC---KVDPDPKDRWGRTP  576 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcc---cccccccccchhheeecccCceeHHHHHHHHH---cCCCChhhccCCCc
Confidence            3445555666666666666655554332   22334566666666666666666666666553   35556666666666


Q ss_pred             HHHHHHhCCHHHHHHHhhC
Q 039828          328 LHLAALYGHYFVAVILGKD  346 (626)
Q Consensus       328 LhlA~~~~~~~iv~~Ll~~  346 (626)
                      |.-|...+|.+++++|-+.
T Consensus       577 lDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  577 LDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             chHhHhcCcHHHHHHHHHH
Confidence            6666666666666666543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.21  E-value=5.1e-06  Score=83.78  Aligned_cols=84  Identities=17%  Similarity=0.240  Sum_probs=46.0

Q ss_pred             hhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCCh
Q 039828          221 MHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRD  300 (626)
Q Consensus       221 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  300 (626)
                      ||..++.|+.++.-.|+..|++..+.....|.||||.|++.|+..-+++|+-.|+++...   |.+|.||+.+|-..|+.
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~---d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQ---DSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCC---CCCCCcHHHHHHhcCch
Confidence            555555555555555555555544444455555555555555555555555555544443   55555555555555555


Q ss_pred             HHHHHHH
Q 039828          301 VSVTHIL  307 (626)
Q Consensus       301 ~i~~~Ll  307 (626)
                      ++.+-|+
T Consensus       214 ~laeRl~  220 (669)
T KOG0818|consen  214 ELAERLV  220 (669)
T ss_pred             HHHHHHH
Confidence            5544444

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.17  E-value=3.4e-06  Score=86.25  Aligned_cols=91  Identities=27%  Similarity=0.448  Sum_probs=74.0

Q ss_pred             cHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhc
Q 039828           15 TLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKN   94 (626)
Q Consensus        15 t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~   94 (626)
                      -|||++.....   .+ .+.+.+..+-...++.+|..|+||||+|+.-|+.+.++.|+..++++            ..+|
T Consensus        22 ~~lh~~~~~~~---~~-sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv------------~~kN   85 (560)
T KOG0522|consen   22 KPLHWAVVTTD---SD-SLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV------------SIKN   85 (560)
T ss_pred             cccchhhhccc---hh-hHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc------------cccc
Confidence            35999998776   44 14555555544458899999999999999999999999999999876            3599


Q ss_pred             cCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCC
Q 039828           95 VRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDP  138 (626)
Q Consensus        95 ~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~  138 (626)
                      ++|++|||.|+.       .|+          .+++..++.+..
T Consensus        86 ~~gWs~L~EAv~-------~g~----------~q~i~~vlr~~~  112 (560)
T KOG0522|consen   86 NEGWSPLHEAVS-------TGN----------EQIITEVLRHLK  112 (560)
T ss_pred             cccccHHHHHHH-------cCC----------HHHHHHHHHHhH
Confidence            999999999999       899          888877776643

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.17  E-value=6e-06  Score=83.29  Aligned_cols=87  Identities=24%  Similarity=0.204  Sum_probs=77.7

Q ss_pred             hHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHH
Q 039828          253 YPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA  332 (626)
Q Consensus       253 tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~  332 (626)
                      --||..++.|+.+..-.|+..|+.++...  ...|.||||.|++.|+..-+++|+-.|    ++++..|.+|.||+.+|-
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~h--pekg~TpLHvAAk~Gq~~Q~ElL~vYG----AD~~a~d~~GmtP~~~AR  208 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFH--PEKGNTPLHVAAKAGQILQAELLAVYG----ADPGAQDSSGMTPVDYAR  208 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCC--cccCCchhHHHHhccchhhhhHHhhcc----CCCCCCCCCCCcHHHHHH
Confidence            35899999999999999999888776653  678999999999999999999999998    999999999999999999


Q ss_pred             HhCCHHHHHHHhh
Q 039828          333 LYGHYFVAVILGK  345 (626)
Q Consensus       333 ~~~~~~iv~~Ll~  345 (626)
                      ..||-++.+.|++
T Consensus       209 ~~gH~~laeRl~e  221 (669)
T KOG0818|consen  209 QGGHHELAERLVE  221 (669)
T ss_pred             hcCchHHHHHHHH
Confidence            9999887776654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.13  E-value=4.9e-06  Score=85.16  Aligned_cols=89  Identities=24%  Similarity=0.324  Sum_probs=67.2

Q ss_pred             chhhHHhhCCCHHHHHHhhhc-CCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHc
Q 039828          219 TPMHWAASVDHLEGVRFLYEI-NPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKK  297 (626)
Q Consensus       219 tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~  297 (626)
                      -|+|+++.....+-....+.. -...+...|..|.||||+|+.-|+.+.++.|+..|++   +..+|++|+++||-|+..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad---v~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD---VSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC---ccccccccccHHHHHHHc
Confidence            458888887776655554333 2334677888889999999999999999999986643   345588899999999999


Q ss_pred             CChHHHHHHHHcC
Q 039828          298 GRDVSVTHILEAS  310 (626)
Q Consensus       298 ~~~~i~~~Ll~~~  310 (626)
                      |+..++..++.+.
T Consensus        99 g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   99 GNEQIITEVLRHL  111 (560)
T ss_pred             CCHHHHHHHHHHh
Confidence            9888888877764

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.12  E-value=1.4e-05  Score=86.59  Aligned_cols=126  Identities=19%  Similarity=0.153  Sum_probs=96.5

Q ss_pred             CCcHHHHHHhcCCCccccHHHHHHHHhhCc---ccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHH
Q 039828           13 GNTLLHIAAAGSIRNHENMAMATTLARKYP---FLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFL   89 (626)
Q Consensus        13 g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~---~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~   89 (626)
                      +.--.-.|+..|+   ..  .|+..++...   -.+|..|.-|+++||.|..+.|.|++++|++....            
T Consensus        25 ~e~~fL~a~E~gd---~~--~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~------------   87 (822)
T KOG3609|consen   25 GEKGFLLAHENGD---VP--LVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE------------   87 (822)
T ss_pred             hhHHHHHHHHcCC---hH--HHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc------------
Confidence            4445567899999   77  8888887643   35789999999999999999999999999986421            


Q ss_pred             HHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcc---------cccCCCCCcHHHHHHHcCC
Q 039828           90 MEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNAS---------YLMNVDCKSPLYLAVESKN  160 (626)
Q Consensus        90 l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~---------~~~~~~g~tpL~~A~~~g~  160 (626)
                            . ..+|.+|++       .+.          .+.++.++.+.....         ...-..+.|||.+||..++
T Consensus        88 ------~-gdALL~aI~-------~~~----------v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~Nn  143 (822)
T KOG3609|consen   88 ------E-GDALLLAIA-------VGS----------VPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNN  143 (822)
T ss_pred             ------c-chHHHHHHH-------HHH----------HHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcc
Confidence                  1 457788888       777          889998888744331         1223346799999999999


Q ss_pred             HHHHHHHHHhCCCCCcccc
Q 039828          161 EDILEYILEALPVNDDCDA  179 (626)
Q Consensus       161 ~~~v~~Ll~~~~~~~~~~~  179 (626)
                      .|+++.|++++......+.
T Consensus       144 yEil~~Ll~kg~~i~~PH~  162 (822)
T KOG3609|consen  144 FEILQCLLTRGHCIPIPHD  162 (822)
T ss_pred             hHHHHHHHHcCCCCCCCcc
Confidence            9999999998875544433

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.10  E-value=3.4e-06  Score=86.57  Aligned_cols=85  Identities=24%  Similarity=0.133  Sum_probs=70.7

Q ss_pred             HHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcc
Q 039828          291 LHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYA  370 (626)
Q Consensus       291 Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~  370 (626)
                      |.-|+.-.+...+-+|+.+|...+.+-...+.+|+|+||+||+.|+..+.++|+|+| +|+.++|..|+|||-+|.+.+.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg-~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYG-VDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhC-ccceecccCCchhhhhHhhccc
Confidence            445666667777888888886555555556778899999999999999999999999 9999999999999999999877


Q ss_pred             cccccc
Q 039828          371 KIIPEF  376 (626)
Q Consensus       371 ~~i~~~  376 (626)
                      .++.+.
T Consensus       707 qec~d~  712 (749)
T KOG0705|consen  707 QECIDV  712 (749)
T ss_pred             HHHHHH
Confidence            665554

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.08  E-value=4.7e-06  Score=53.41  Aligned_cols=31  Identities=35%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             CchHHHHHHHcCChHHHHHHHHcCCcchhhcccCC
Q 039828          287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMD  321 (626)
Q Consensus       287 g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d  321 (626)
                      |+||||+|+.+++.+++++|++.|    ++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~g----a~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHG----ADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTT----SCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCc----CCCCCCC
Confidence            666666666666666666666665    5555554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.89  E-value=2.8e-05  Score=80.10  Aligned_cols=90  Identities=23%  Similarity=0.168  Sum_probs=77.4

Q ss_pred             HHHHHHhcCChHHHHHHHhccCCCCCccc-ccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHH
Q 039828          254 PFHLASANGCVPVMGEFLEKENMPHPNEL-FNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA  332 (626)
Q Consensus       254 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~-~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~  332 (626)
                      -|.-|+...++..+-.|+.+|......+. -+..|+|+||+||..|+..+.++|+=+|    .++..+|..|+|+|.||-
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg----~dv~~rda~g~t~l~yar  702 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYG----VDVMARDAHGRTALFYAR  702 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhC----ccceecccCCchhhhhHh
Confidence            35567777788888889988765544443 3566899999999999999999999888    889999999999999999


Q ss_pred             HhCCHHHHHHHhhCC
Q 039828          333 LYGHYFVAVILGKDG  347 (626)
Q Consensus       333 ~~~~~~iv~~Ll~~g  347 (626)
                      ..|..+++..|+++|
T Consensus       703 ~a~sqec~d~llq~g  717 (749)
T KOG0705|consen  703 QAGSQECIDVLLQYG  717 (749)
T ss_pred             hcccHHHHHHHHHcC
Confidence            999999999999998

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.87  E-value=1e-05  Score=90.33  Aligned_cols=81  Identities=33%  Similarity=0.468  Sum_probs=76.1

Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHH
Q 039828          285 NKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDI  364 (626)
Q Consensus       285 ~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~l  364 (626)
                      ..|.++||.|+..+.....++|+++|    +++|.+|..|+||||.+...|+...+..|++.| ++.++.+.+|++|+++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~g----a~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~-a~~~a~~~~~~~~l~~  728 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNG----ADVNALDSKGRTPLHHATASGHTSIACLLLKRG-ADPNAFDPDGKLPLDI  728 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcC----CcchhhhccCCCcchhhhhhcccchhhhhcccc-ccccccCccCcchhhH
Confidence            45789999999999999999999999    889999999999999999999999999999988 9999999999999999


Q ss_pred             HHHhcc
Q 039828          365 AEQQYA  370 (626)
Q Consensus       365 a~~~~~  370 (626)
                      |.+..+
T Consensus       729 a~~~~~  734 (785)
T KOG0521|consen  729 AMEAAN  734 (785)
T ss_pred             Hhhhcc
Confidence            987633

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.81  E-value=6e-05  Score=81.91  Aligned_cols=125  Identities=17%  Similarity=0.158  Sum_probs=100.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCC--CCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhH
Q 039828          146 VDCKSPLYLAVESKNEDILEYILEALPV--NDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHW  223 (626)
Q Consensus       146 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~  223 (626)
                      ..++--...|+++|+...|+..++....  .+.+..+.-|.++|+.|+.+.+.++.+.|++... .      . ..+|.+
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~-~------~-gdALL~   94 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSS-E------E-GDALLL   94 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcc-c------c-chHHHH
Confidence            3456667889999999999999997664  4456678889999999999999999999998861 1      1 568999


Q ss_pred             HhhCCCHHHHHHhhhcCCCcc---------cccCCCCChHHHHHHhcCChHHHHHHHhccCCCC
Q 039828          224 AASVDHLEGVRFLYEINPDSV---------LQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH  278 (626)
Q Consensus       224 Aa~~g~~~~v~~Ll~~~~~~~---------~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~  278 (626)
                      |+..|..++|+.++.+.....         ...-..+-||+.+||..++.|+++.|+++|++..
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            999999999999998855421         1122346799999999999999999999886543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.65  E-value=4.3e-05  Score=84.78  Aligned_cols=130  Identities=22%  Similarity=0.164  Sum_probs=94.0

Q ss_pred             ccccCCCCChHHHHHHhcCChHHHHHHHhc-cCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCC
Q 039828          244 VLQKNEEGLYPFHLASANGCVPVMGEFLEK-ENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDD  322 (626)
Q Consensus       244 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~  322 (626)
                      .....-.|.+-+|+++..+....++.+++- +..+.   ..|..|+..+|.++.. +.+..-+++...   ...++.+|.
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~---eld~d~qgV~hfca~l-g~ewA~ll~~~~---~~ai~i~D~  639 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDL---ELDRDGQGVIHFCAAL-GYEWAFLPISAD---GVAIDIRDR  639 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCch---hhcccCCChhhHhhhc-CCceeEEEEeec---ccccccccC
Confidence            344566788889999988888888888874 32222   3477888888885554 455544444332   267888899


Q ss_pred             CCCCHHHHHHHhCCHHHHHHHhhCCCC-----cccccccCCCCHHHHHHHhcccccccccccc
Q 039828          323 DGNTPLHLAALYGHYFVAVILGKDGRA-----ESDIINFYGQTAYDIAEQQYAKIIPEFSEND  380 (626)
Q Consensus       323 ~G~TpLhlA~~~~~~~iv~~Ll~~g~~-----d~~~~n~~g~tpl~la~~~~~~~i~~~~~~~  380 (626)
                      .|+||||+|+..|+..++..|...|+.     |+....-.|.|+-++|...|+..+..++.+.
T Consensus       640 ~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  640 NGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999988888876622     2334455799999999999998888887554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.56  E-value=0.00012  Score=81.35  Aligned_cols=127  Identities=15%  Similarity=0.106  Sum_probs=56.8

Q ss_pred             cCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHh
Q 039828          181 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASA  260 (626)
Q Consensus       181 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  260 (626)
                      ..|.+.+|+++..+..-.++.+++.........|.+|...+|+++. ++.+..-++.......++.+|..|+||||+|+.
T Consensus       572 ~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~-lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~  650 (975)
T KOG0520|consen  572 FRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA-LGYEWAFLPISADGVAIDIRDRNGWTPLHWAAF  650 (975)
T ss_pred             CcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh-cCCceeEEEEeecccccccccCCCCcccchHhh
Confidence            3455555555555555555555554113333444444444554222 233333333322222244555555555555555


Q ss_pred             cCChHHHHHHHhccCCCCCccc---ccCCCchHHHHHHHcCChHHHHHHHH
Q 039828          261 NGCVPVMGEFLEKENMPHPNEL---FNNKGQNILHVAAKKGRDVSVTHILE  308 (626)
Q Consensus       261 ~g~~~~v~~Ll~~g~~~~~~~~---~d~~g~t~Lh~A~~~~~~~i~~~Ll~  308 (626)
                      +|+..++..|++.|+.+.....   .+..|.|+-.+|-.+|+..+..+|-+
T Consensus       651 ~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  651 RGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             cCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            5555555555544433332110   12234455555555555544444433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.36  E-value=0.00047  Score=61.54  Aligned_cols=66  Identities=21%  Similarity=0.150  Sum_probs=54.8

Q ss_pred             ccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhc
Q 039828          208 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK  273 (626)
Q Consensus       208 ~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  273 (626)
                      .+++.+|..|+|+|++|+..|..+.+.+|+.++...+...|..|.+++.+|-+.|..++++.|.+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            356778888888888888888888888888888555888888888888888888888888888774

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.32  E-value=0.0012  Score=59.01  Aligned_cols=70  Identities=16%  Similarity=0.107  Sum_probs=65.0

Q ss_pred             cccccccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccc
Q 039828            2 SETFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAK   76 (626)
Q Consensus         2 ~e~~~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~   76 (626)
                      +|+-.+.+|.-|+|+|+.|+..|+   .+  .+.||+..+...+...|..|.+++.+|-+.|+.++|+.|.++..
T Consensus         1 se~~in~rD~fgWTalmcaa~eg~---~e--avsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    1 SEGNINARDAFGWTALMCAAMEGS---NE--AVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCCCccchhhhcchHHHHHhhhcc---hh--HHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            477889999999999999999999   89  99999999977799999999999999999999999999998754

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.29  E-value=0.00036  Score=68.63  Aligned_cols=56  Identities=16%  Similarity=0.095  Sum_probs=51.9

Q ss_pred             cHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccc
Q 039828           15 TLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAK   76 (626)
Q Consensus        15 t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~   76 (626)
                      --|..||+.|+   .+  .|++|++-|.+ +|..|....+||.+|+..||.++|++|+++|+
T Consensus        38 ~elceacR~GD---~d--~v~~LVetgvn-VN~vD~fD~spL~lAsLcGHe~vvklLLenGA   93 (516)
T KOG0511|consen   38 GELCEACRAGD---VD--RVRYLVETGVN-VNAVDRFDSSPLYLASLCGHEDVVKLLLENGA   93 (516)
T ss_pred             HHHHHHhhccc---HH--HHHHHHHhCCC-cchhhcccccHHHHHHHcCcHHHHHHHHHcCC
Confidence            34789999999   88  99999997765 99999999999999999999999999999997

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.22  E-value=0.00053  Score=76.89  Aligned_cols=88  Identities=20%  Similarity=0.243  Sum_probs=64.2

Q ss_pred             CCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHH
Q 039828          215 EQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVA  294 (626)
Q Consensus       215 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A  294 (626)
                      ..|.|+||.|+..|..-++++|++.+++ ++..|..|++|+|.+...|+......++++|+.+...   +..|.+++++|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~---~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAF---DPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcccccccccc---CccCcchhhHH
Confidence            4567778888888887788888877777 7777778888888888888887777777777666554   77777888877


Q ss_pred             HHcCChHHHHHH
Q 039828          295 AKKGRDVSVTHI  306 (626)
Q Consensus       295 ~~~~~~~i~~~L  306 (626)
                      ....+.+++-++
T Consensus       730 ~~~~~~d~~~l~  741 (785)
T KOG0521|consen  730 MEAANADIVLLL  741 (785)
T ss_pred             hhhccccHHHHH
Confidence            666555544433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.20  E-value=0.00075  Score=66.43  Aligned_cols=85  Identities=19%  Similarity=0.128  Sum_probs=60.2

Q ss_pred             ChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHH
Q 039828          252 LYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLA  331 (626)
Q Consensus       252 ~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA  331 (626)
                      .--|..||+.|..+.++.|++.|   .+++.+|.....||.+|+..||..++++|+++|+.    -..-.-+|... |++
T Consensus        37 f~elceacR~GD~d~v~~LVetg---vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi----C~rdtf~G~RC-~Yg  108 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETG---VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI----CSRDTFDGDRC-HYG  108 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhC---CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc----ccccccCcchh-hhh
Confidence            44578899999999999999866   44566788899999999999999999999999843    33223345444 444


Q ss_pred             HHhCCHHHHHHHhhC
Q 039828          332 ALYGHYFVAVILGKD  346 (626)
Q Consensus       332 ~~~~~~~iv~~Ll~~  346 (626)
                      +.+.  .+-+.|+..
T Consensus       109 aLnd--~IR~mllsy  121 (516)
T KOG0511|consen  109 ALND--RIRRMLLSY  121 (516)
T ss_pred             hhhH--HHHHHHHHH
Confidence            4432  344455543

>smart00248 ANK ankyrin repeats

Probab=96.38  E-value=0.0054  Score=36.77  Aligned_cols=27  Identities=44%  Similarity=0.738  Sum_probs=22.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcccc
Q 039828           51 KGDTPLHVAARDGMLQTAKILVDCAKR   77 (626)
Q Consensus        51 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~   77 (626)
                      .|.||+|+|+..|+.++++.|++.+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            478899999999999999999887754

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.81  E-value=0.015  Score=34.76  Aligned_cols=24  Identities=50%  Similarity=0.657  Sum_probs=17.3

Q ss_pred             CCCHHHHHHHhCCHHHHHHHhhCC
Q 039828          324 GNTPLHLAALYGHYFVAVILGKDG  347 (626)
Q Consensus       324 G~TpLhlA~~~~~~~iv~~Ll~~g  347 (626)
                      |.||+|+|+..++.++++.|++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            667777777777777777777666

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.39  E-value=0.016  Score=59.52  Aligned_cols=67  Identities=19%  Similarity=0.107  Sum_probs=52.5

Q ss_pred             ChHHHHHHHHcCCcchhh--cccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHH
Q 039828          299 RDVSVTHILEASDLTDKL--INEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAE  366 (626)
Q Consensus       299 ~~~i~~~Ll~~~~~~~~~--in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~  366 (626)
                      -...+++|.+++...+.+  +...|..--|+||+|+..|..++|.+||+.| +|+.++|..|+||.+++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccc
Confidence            366778888776322222  2223444679999999999999999999999 999999999999999987

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.91  E-value=0.52  Score=42.60  Aligned_cols=138  Identities=18%  Similarity=0.120  Sum_probs=85.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCC
Q 039828          150 SPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDH  229 (626)
Q Consensus       150 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~  229 (626)
                      .-+..|+..+-..+++..-+....     .-...++.+..||+..+.|+++++-+.-      .-.+-.+....|....+
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~-----~~~~~q~LFElAC~~qkydiV~WI~qnL------~i~~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLEN-----ERYLNQELFELACEEQKYDIVKWIGQNL------HIYNPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhc-----chhHHHHHHHHHHHHccccHHHHHhhcc------CCCCchhhhhhhhhccc
Confidence            456778888888888887775331     1234677888899999999999985432      11222345667777777


Q ss_pred             HHHHH----HhhhcCCCcccccCCC--CChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHH
Q 039828          230 LEGVR----FLYEINPDSVLQKNEE--GLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSV  303 (626)
Q Consensus       230 ~~~v~----~Ll~~~~~~~~~~d~~--g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~  303 (626)
                      .++..    ++.++... ....|..  -..-|..|+..|-...+...+++|.+.         ..++|..|+.+++.+++
T Consensus       117 lsLyslGY~l~~~~~~~-~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~---------~~~vls~Av~ynhRkIL  186 (192)
T PF03158_consen  117 LSLYSLGYKLLFNRMMS-EHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNV---------DIIVLSQAVKYNHRKIL  186 (192)
T ss_pred             hhHHHHHHHHHHhhccc-ccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcc---------cHHHHHHHHHhhHHHHH
Confidence            66532    12222111 0000000  012356788888888888888876322         23788888888888888


Q ss_pred             HHHHH
Q 039828          304 THILE  308 (626)
Q Consensus       304 ~~Ll~  308 (626)
                      .+++.
T Consensus       187 ~yfi~  191 (192)
T PF03158_consen  187 DYFIR  191 (192)
T ss_pred             HHhhc
Confidence            77764

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=92.73  E-value=0.14  Score=52.87  Aligned_cols=67  Identities=24%  Similarity=0.178  Sum_probs=51.6

Q ss_pred             CChHHHHHHHhccCCCCCc---ccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHH
Q 039828          262 GCVPVMGEFLEKENMPHPN---ELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA  332 (626)
Q Consensus       262 g~~~~v~~Ll~~g~~~~~~---~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~  332 (626)
                      .....+++|.+++...+..   +..+..--|+||+|+..|..+++.++|+.+    +++..+|..|.||..++.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg----~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG----CDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc----CCchhcccCCCCcccccc
Confidence            3466777777654322111   112444679999999999999999999998    899999999999999988

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=88.84  E-value=3  Score=39.00  Aligned_cols=27  Identities=30%  Similarity=0.252  Sum_probs=14.9

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828          321 DDDGNTPLHLAALYGHYFVAVILGKDG  347 (626)
Q Consensus       321 d~~G~TpLhlA~~~~~~~iv~~Ll~~g  347 (626)
                      -+.|.|.|.-|.+.++.+++.+|+++|
T Consensus       251 ~NSGdtMLDNA~Ky~~~emi~~Llk~G  277 (284)
T PF06128_consen  251 VNSGDTMLDNAMKYKNSEMIAFLLKYG  277 (284)
T ss_pred             cCCcchHHHhHHhcCcHHHHHHHHHcC
Confidence            344555555555555555555555555

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=88.61  E-value=3.1  Score=38.93  Aligned_cols=92  Identities=14%  Similarity=0.131  Sum_probs=56.5

Q ss_pred             CchhhHHhhCCCHHHHHHhhhcCCCcccccC----CCCChHHHHHH--hcCChHHHHHHHhccC-CCCCcccccCCCchH
Q 039828          218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKN----EEGLYPFHLAS--ANGCVPVMGEFLEKEN-MPHPNELFNNKGQNI  290 (626)
Q Consensus       218 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d----~~g~tpLh~A~--~~g~~~~v~~Ll~~g~-~~~~~~~~d~~g~t~  290 (626)
                      .+++-++..++..+++-+|+....-  ..+|    ..+..-+.++.  ..-+..++++++.+|- .++..-.+-+.|.|-
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~f--t~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNF--TKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcce--ecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            3556666666666666666654211  0111    11222233322  2335778888888763 223333345789999


Q ss_pred             HHHHHHcCChHHHHHHHHcCC
Q 039828          291 LHVAAKKGRDVSVTHILEASD  311 (626)
Q Consensus       291 Lh~A~~~~~~~i~~~Ll~~~~  311 (626)
                      |.-|+++++.+.+.+|+++|+
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCc
Confidence            999999999999999999983

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=83.87  E-value=6.7  Score=35.67  Aligned_cols=137  Identities=14%  Similarity=0.069  Sum_probs=80.1

Q ss_pred             HHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhcc
Q 039828           16 LLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNV   95 (626)
Q Consensus        16 ~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~   95 (626)
                      .|--|+.++.   ..  ++++.-+.    +...-...++..-.||+..+.|+|+++=+.-.-.                 
T Consensus        49 Ll~HAVk~nm---L~--ILqkyke~----L~~~~~~~q~LFElAC~~qkydiV~WI~qnL~i~-----------------  102 (192)
T PF03158_consen   49 LLYHAVKYNM---LS--ILQKYKED----LENERYLNQELFELACEEQKYDIVKWIGQNLHIY-----------------  102 (192)
T ss_pred             HHHHHHHcCc---HH--HHHHHHHH----hhcchhHHHHHHHHHHHHccccHHHHHhhccCCC-----------------
Confidence            4455667777   66  66555443    2212245678889999999999999995432211                 


Q ss_pred             CCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHH-HhhcC-----CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 039828           96 RGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLAR-SLVSE-----DPNASYLMNVDCKSPLYLAVESKNEDILEYILE  169 (626)
Q Consensus        96 ~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~-~Ll~~-----~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  169 (626)
                      +-.+.+-.|..       ..+.       .+..+-- .+.++     +.++....    ..-|..|+..|-...+...++
T Consensus       103 ~~~~iFdIA~~-------~kDl-------sLyslGY~l~~~~~~~~~~~d~~~ll----~~hl~~a~~kgll~F~letlk  164 (192)
T PF03158_consen  103 NPEDIFDIAFA-------KKDL-------SLYSLGYKLLFNRMMSEHNEDPTSLL----TQHLEKAAAKGLLPFVLETLK  164 (192)
T ss_pred             Cchhhhhhhhh-------ccch-------hHHHHHHHHHHhhcccccccCHHHHH----HHHHHHHHHCCCHHHHHHHHH
Confidence            11222333433       2220       0011111 12222     11111110    134678999999999999999


Q ss_pred             hCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh
Q 039828          170 ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHD  204 (626)
Q Consensus       170 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  204 (626)
                      .|...+.        ++|..|+..++-.++.+++.
T Consensus       165 ygg~~~~--------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  165 YGGNVDI--------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             cCCcccH--------HHHHHHHHhhHHHHHHHhhc
Confidence            8773321        68899999999999988764

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=83.43  E-value=2  Score=33.31  Aligned_cols=49  Identities=16%  Similarity=0.161  Sum_probs=37.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcC
Q 039828          149 KSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQ  206 (626)
Q Consensus       149 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  206 (626)
                      ...+..|+..|+.|+++.+++...         .....+..|+...+.+++++|++..
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~---------~~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK---------PDNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc---------cHHHHHHHHHHHhhHHHHHHHHHhc
Confidence            456788888888888888887532         1245688888888888888888774

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	626
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-11
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		6e-04
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-10
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-09
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		8e-09
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-08
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-08
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		9e-08
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-07
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-07
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-06
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-06
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-06
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-06
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-06
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-06
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-05
1uoh_A	226	Human Gankyrin Length = 226		1e-05
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-05
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-05
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-05
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		5e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		5e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-04
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-04
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		4e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		4e-04
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		4e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		4e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		6e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		7e-04
2xen_A	91	Structural Determinants For Improved Thermal Stabil		8e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		8e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 153/363 (42%), Gaps = 60/363 (16%)
Query: 47  MQNSKGDTPLHVAARDGMLQTAKILVD-----------------CAKRMTSSSQIDVKFL 89
           + N K +TPLH+AAR G  + AK L+                  CA R+  ++   VK L
Sbjct: 42  VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNM--VKLL 99
Query: 90  ME------MKNVRGNTALH--------EALNALQDAKKDKNKPKEDGVTSLD-------- 127
           +E      +    G+T LH        E + AL + +  +    + G T L         
Sbjct: 100 LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV 159
Query: 128 SLARSLVSED--PNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKS 185
            +A  L+  D  PNA+     +  +PL++AV   N DI++ +L              G +
Sbjct: 160 RVAELLLERDAHPNAA---GKNGLTPLHVAVHHNNLDIVKLLLPR--GGSPHSPAWNGYT 214
Query: 186 PVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVL 245
           P+ +A +  ++ + + +  +       +  Q  TP+H AA   H E V  L     +  L
Sbjct: 215 PLHIAAKQNQVEVARSL-LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 246 QKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTH 305
             N+ GL P HL +  G VPV    ++   M    +     G   LHVA+  G    V  
Sbjct: 274 -GNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTPLHVASHYGNIKLVKF 329
Query: 306 ILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDI 364
           +L+  +D     +N     G +PLH AA  GH  +  +L K+G A  + ++  G T   I
Sbjct: 330 LLQHQAD-----VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAI 383
Query: 365 AEQ 367
           A++
Sbjct: 384 AKR 386

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 252 LYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASD 311
           L P H+AS  G +P++   L++   P    + N K +  LH+AA+ G      ++L+   
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASP---NVSNVKVETPLHMAARAGHTEVAKYLLQ--- 68
Query: 312 LTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368
                +N    D  TPLH AA  GH  +  +L  +  A  ++    G T   IA ++
Sbjct: 69  -NKAKVNAKAKDDQTPLHCAARIGHTNMVKLL-LENNANPNLATTAGHTPLHIAARE 123

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/129 (37%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
           TP+H AA   HLE V+ L E   D V  K++ G  P HLA+ NG + V+   LE     +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYF 338
             +     G+  LH+AA+ G    V  +LEA       +N  D +G TPLHLAA  GH  
Sbjct: 63  AKD---KNGRTPLHLAARNGHLEVVKLLLEAG----ADVNAKDKNGRTPLHLAARNGHLE 115
Query: 339 VAVILGKDG 347
           V  +L + G
Sbjct: 116 VVKLLLEAG 124

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 12/200 (6%)
Query: 147 DCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQ 206
           D ++PL  A E+ + + ++Y+++A  + D  DA  EG + + +A +     +++ +    
Sbjct: 43  DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA--EGSTCLHLAAKKGHYEVVQYLLSNG 100
Query: 207 PALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPV 266
              +  QD+   TPM WA    H++ V+ L     D  ++ NEE +   H A+ +GCV +
Sbjct: 101 QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENIC-LHWAAFSGCVDI 159
Query: 267 MGEFLEKENMPHPNELFNNKGQNILHVAAKKGR-DVSVTHILEASDLTDKLINEMDDDGN 325
               L  +   H     N  G + LH+AA++ R D  V  +   SD+T K     + +G 
Sbjct: 160 AEILLAAKCDLHA---VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK-----NKEGE 211
Query: 326 TPLHLAALYGHYFVAVILGK 345
           TPL  A+L    + A+ + K
Sbjct: 212 TPLQCASLNSQVWSALQMSK 231

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 67/147 (45%), Gaps = 42/147 (28%)
Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
           TP+H AAS  HLE V  L +   D V   +  G+ P HLA+A G +              
Sbjct: 49  TPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLE------------- 94
Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYF 338
                      I+ V  K G DV                N  D+DG+TPLHLAA YGH  
Sbjct: 95  -----------IVEVLLKHGADV----------------NAYDNDGHTPLHLAAKYGHLE 127
Query: 339 VAVILGKDGRAESDIINFYGQTAYDIA 365
           +  +L K G A+ +  + +G+TA+DI+
Sbjct: 128 IVEVLLKHG-ADVNAQDKFGKTAFDIS 153

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 38/206 (18%)
Query: 200 KMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE----INPDSVLQKNEEGLYPF 255
           +++H K P+LLL +D+    P+HW+ S    E   FL      +N D     ++ G  PF
Sbjct: 20  ELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY--PDDSGWTPF 76
Query: 256 HLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVA-AKKGRDVSVTHILEASD--L 312
           H+A + G + V+    ++   P  N++  N+G   LH+A  KK  +VS   I   +   +
Sbjct: 77  HIACSVGNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 313 TDKL---------------------------INEMDDDGNTPLHLAALYGHYFVAVILGK 345
            DK                            +N  D  G TPL  A   GH   AV+L +
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Query: 346 DGRAESDIINFYGQTAYDIAEQQYAK 371
              AE D+++  G  A D+A  +  K
Sbjct: 196 KYGAEYDLVDNKGAKAEDVALNEQVK 221

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 38/206 (18%)
Query: 200 KMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE----INPDSVLQKNEEGLYPF 255
           +++H K P+LLL +D+    P+HW+ S    E   FL      +N D     ++ G  PF
Sbjct: 20  ELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY--PDDSGWTPF 76
Query: 256 HLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVA-AKKGRDVSVTHILEASD--L 312
           H+A + G + V+    ++   P  N++  N+G   LH+A  KK  +VS   I   +   +
Sbjct: 77  HIACSVGNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 313 TDKL---------------------------INEMDDDGNTPLHLAALYGHYFVAVILGK 345
            DK                            +N  D  G TPL  A   GH   AV+L +
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Query: 346 DGRAESDIINFYGQTAYDIAEQQYAK 371
              AE D+++  G  A D+A  +  K
Sbjct: 196 KYGAEYDLVDNKGAKAEDVALNEQVK 221

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 38/206 (18%)
Query: 200 KMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE----INPDSVLQKNEEGLYPF 255
           +++H K P+LLL +D+    P+HW+ S    E   FL      +N D     ++ G  PF
Sbjct: 20  ELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY--PDDSGWTPF 76
Query: 256 HLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVA-AKKGRDVSVTHILEASD--L 312
           H+A + G + V+    ++   P  N++  N+G   LH+A  KK  +VS   I   +   +
Sbjct: 77  HIACSVGNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 313 TDKL---------------------------INEMDDDGNTPLHLAALYGHYFVAVILGK 345
            DK                            +N  D  G TPL  A   GH   AV+L +
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Query: 346 DGRAESDIINFYGQTAYDIAEQQYAK 371
              AE D+++  G  A D+A  +  K
Sbjct: 196 KYGAEYDLVDNKGAKAEDVALNEQVK 221

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 42/153 (27%)
Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
           +D+   TP+H AA   HLE V  L +   D V  K+++G  P HLA+  G +        
Sbjct: 43  KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHL-------- 93
Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
                            I+ V  K G DV                N  D DG TPLHLAA
Sbjct: 94  ----------------EIVEVLLKAGADV----------------NAKDKDGYTPLHLAA 121
Query: 333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
             GH  +  +L K G A+ +  + +G+TA+DI+
Sbjct: 122 REGHLEIVEVLLKAG-ADVNAQDKFGKTAFDIS 153

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
           D    TP+H AA   H E V+ L     D    K+ +G  P HLA+ NG   V+   L +
Sbjct: 34  DSDGKTPLHLAAENGHKEVVKLLLSQGADPN-AKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 274 ENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAAL 333
              P+  +   + G+  LH+AA+ G    V  +L  S   D   N  D DG TPL LA  
Sbjct: 93  GADPNAKD---SDGKTPLHLAAENGHKEVVKLLL--SQGADP--NTSDSDGRTPLDLARE 145
Query: 334 YGHYFVAVILGKDG 347
           +G+  V  +L K G
Sbjct: 146 HGNEEVVKLLEKQG 159

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 71/163 (43%), Gaps = 42/163 (25%)
Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
           +D+   TP+H AA   HLE V  L +   D V  K+++G  P HLA+  G +        
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHL-------- 81
Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
                            I+ V  K G DV                N  D DG TPLHLAA
Sbjct: 82  ----------------EIVEVLLKAGADV----------------NAKDKDGYTPLHLAA 109
Query: 333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPE 375
             GH  +  +L K G A+ +  + +G+T +D+A ++  + I E
Sbjct: 110 REGHLEIVEVLLKAG-ADVNAQDKFGKTPFDLAIREGHEDIAE 151

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 66/153 (43%), Gaps = 42/153 (27%)
Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
           +D+   TP+H AA   HLE V  L +   D V  K+++G  P HLA+  G +        
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHL-------- 81
Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
                            I+ V  K G DV                N  D DG TPLHLAA
Sbjct: 82  ----------------EIVEVLLKAGADV----------------NAKDKDGYTPLHLAA 109
Query: 333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
             GH  +  +L K G A+ +  + +G+T +D+A
Sbjct: 110 REGHLEIVEVLLKAG-ADVNAQDKFGKTPFDLA 141

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 42/153 (27%)
Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
            D+Q +TP+H AA + H E V  L +   D V  ++ +G  P HLA+ NG +        
Sbjct: 43  HDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHL-------- 93
Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
                            I+ V  K G DV                N  D  G TPLHLAA
Sbjct: 94  ----------------EIVEVLLKYGADV----------------NAQDAYGLTPLHLAA 121
Query: 333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
             GH  +  +L K G A+ +  + +G+TA+DI+
Sbjct: 122 DRGHLEIVEVLLKHG-ADVNAQDKFGKTAFDIS 153

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 42/147 (28%)
Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
           TP+H AA   HLE V  L + N   V  K+  G+ P HLA+  G +              
Sbjct: 49  TPLHLAAHFGHLEIVEVLLK-NGADVNAKDSLGVTPLHLAARRGHL-------------- 93
Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYF 338
                      I+ V  K G DV                N  D  G TPLHLAA  GH  
Sbjct: 94  ----------EIVEVLLKNGADV----------------NASDSHGFTPLHLAAKRGHLE 127
Query: 339 VAVILGKDGRAESDIINFYGQTAYDIA 365
           +  +L K+G A+ +  + +G+TA+DI+
Sbjct: 128 IVEVLLKNG-ADVNAQDKFGKTAFDIS 153

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 10/135 (7%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
           D    TP+H+AA   H E V+ L     D V  K+ +G  P H A+  G   ++   + K
Sbjct: 34  DSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 274 ENMPHPNELFNNKGQNILHVAAKKG-RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
               +  +   + G+  LH AAK+G +++    I + +D     +N  D DG TPL LA 
Sbjct: 93  GADVNAKD---SDGRTPLHYAAKEGHKEIVKLLISKGAD-----VNTSDSDGRTPLDLAR 144
Query: 333 LYGHYFVAVILGKDG 347
            +G+  +  +L K G
Sbjct: 145 EHGNEEIVKLLEKQG 159

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 224 AASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELF 283
           AA     + VR L   N   V  ++  G  P HLA+ NG + ++   L+  N    N + 
Sbjct: 21  AARAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK--NGADVNAV- 76
Query: 284 NNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
           ++ G   L +AA  G       I+E        +N  D +G+TPLHLAA++GH  +  +L
Sbjct: 77  DHAGMTPLRLAALFGH----LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Query: 344 GKDGRAESDIINFYGQTAYDIA 365
            K+G A+ +  + +G+TA+DI+
Sbjct: 133 LKNG-ADVNAQDKFGKTAFDIS 153

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 69/161 (42%), Gaps = 35/161 (21%)
Query: 200 KMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLAS 259
           +++ DK  A    QD +  T +HWA S  H E V FL ++    V  K++ G  P H+A+
Sbjct: 25  RILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLGV-PVNDKDDAGWSPLHIAA 81
Query: 260 ANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE------ASDLT 313
           + G   ++   L K    H N + N  G   LH AA K R      +LE      A D  
Sbjct: 82  SAGXDEIVKALLVKG--AHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 314 D-------------KLI----------NEMDDDGNTPLHLA 331
           D             K++          N  D +GNTPLHLA
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
           D    TP+H+AA   H E V+ L     D    K+ +G  P H A+ NG   ++   L K
Sbjct: 34  DSDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 274 ENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAAL 333
              P+  +   + G+  LH AA+ G    V  +L  S   D   N  D DG TPL LA  
Sbjct: 93  GADPNAKD---SDGRTPLHYAAENGHKEIVKLLL--SKGADP--NTSDSDGRTPLDLARE 145
Query: 334 YGHYFVAVILGKDG 347
           +G+  +  +L K G
Sbjct: 146 HGNEEIVKLLEKQG 159

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 233 VRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH 292
           VR L   N   V   +  G  P HLA+ +G + ++   L+       +++F   G   LH
Sbjct: 30  VRILMA-NGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF---GYTPLH 85
Query: 293 VAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD 352
           +AA  G       I+E        +N MD DG TPLHLAA +G+  +  +L K G A+ +
Sbjct: 86  LAAYWGH----LEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG-ADVN 140
Query: 353 IINFYGQTAYDIA 365
             + +G+TA+DI+
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 42/148 (28%)
Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
           +TP+H AA   HLE V  L +   D V   +  G  P HLA+ NG +             
Sbjct: 48  HTPLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHL------------- 93
Query: 278 HPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHY 337
                       I+ V  K G DV                N  D +G TPLHLAA  GH 
Sbjct: 94  -----------EIVEVLLKHGADV----------------NAKDYEGFTPLHLAAYDGHL 126
Query: 338 FVAVILGKDGRAESDIINFYGQTAYDIA 365
            +  +L K G A+ +  + +G+TA+DI+
Sbjct: 127 EIVEVLLKYG-ADVNAQDKFGKTAFDIS 153

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 69/161 (42%), Gaps = 35/161 (21%)
Query: 200 KMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLAS 259
           +++ DK  A    QD +  T +HWA S  H E V FL ++    V  K++ G  P H+A+
Sbjct: 25  RILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLGV-PVNDKDDAGWSPLHIAA 81
Query: 260 ANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE------ASDLT 313
           + G   ++   L K    H N + N  G   LH AA K R      +LE      A D  
Sbjct: 82  SAGRDEIVKALLVK--GAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 314 D-------------KLI----------NEMDDDGNTPLHLA 331
           D             K++          N  D +GNTPLHLA
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
           D    TP+H AA   H E V+ L     D V  K+ +G  P H A+ NG   V+   + K
Sbjct: 34  DSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 274 ENMPHPNELFNNKGQNILHVAAKKG-RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
               +  +   + G+  LH AA+ G ++V    I + +D     +N  D DG TPL LA 
Sbjct: 93  GADVNAKD---SDGRTPLHHAAENGHKEVVKLLISKGAD-----VNTSDSDGRTPLDLAR 144
Query: 333 LYGHYFVAVILGKDG 347
            +G+  V  +L K G
Sbjct: 145 EHGNEEVVKLLEKQG 159

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 59/147 (40%), Gaps = 33/147 (22%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
           D+   T +HWA S  H E V FL ++    V  K++ G  P H+A++ G   ++   L K
Sbjct: 38  DQDSRTALHWACSAGHTEIVEFLLQLGV-PVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 274 ENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEAS---DLTD---------------- 314
               +     N  G   LH AA K R      +LE     D  D                
Sbjct: 97  GAQVNA---VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 153
Query: 315 KLI----------NEMDDDGNTPLHLA 331
           K+I          N  D +GNTPLHLA
Sbjct: 154 KMIHILLYYKASTNIQDTEGNTPLHLA 180

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 59/147 (40%), Gaps = 33/147 (22%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
           D+   T +HWA S  H E V FL ++    V  K++ G  P H+A++ G   ++   L K
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGV-PVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 274 ENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEAS---DLTD---------------- 314
               +     N  G   LH AA K R      +LE     D  D                
Sbjct: 96  GAQVNA---VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 152
Query: 315 KLI----------NEMDDDGNTPLHLA 331
           K+I          N  D +GNTPLHLA
Sbjct: 153 KMIHILLYYKASTNIQDTEGNTPLHLA 179

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 13/155 (8%)
Query: 224 AASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELF 283
           AA+    + VR L   N   V   ++ GL P HLA+ANG + ++ E L K N    N   
Sbjct: 13  AAAAGQDDEVRILMA-NGADVNATDDNGLTPLHLAAANGQLEIV-EVLLK-NGADVNA-S 68
Query: 284 NNKGQNILHVAAKKGRDVSVTHIL--EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAV 341
           ++ G   LH+AA  G  + +  +L    +D     +N  D  G TPLHLAAL G   +  
Sbjct: 69  DSAGITPLHLAAYDGH-LEIVEVLLKHGAD-----VNAYDRAGWTPLHLAALSGQLEIVE 122
Query: 342 ILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF 376
           +L K G A+ +  +  G TA+DI+  Q  + + E 
Sbjct: 123 VLLKHG-ADVNAQDALGLTAFDISINQGQEDLAEI 156

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 42/147 (28%)
Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
           TP+H AA+  HLE V  L +   D V   +  G  P HLA+  G +              
Sbjct: 49  TPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLE------------- 94
Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYF 338
                      I+ V  K G DV                N +D  G+TPLHLAA+ GH  
Sbjct: 95  -----------IVEVLLKHGADV----------------NAVDTWGDTPLHLAAIMGHLE 127
Query: 339 VAVILGKDGRAESDIINFYGQTAYDIA 365
           +  +L K G A+ +  + +G+TA+DI+
Sbjct: 128 IVEVLLKHG-ADVNAQDKFGKTAFDIS 153

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 286 KGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGK 345
           KG   LH+AA    D     I+E        +N  D+DG+TPLHLAAL+GH  +  +L K
Sbjct: 46  KGNTPLHLAA----DYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLK 101
Query: 346 DGRAESDIINFYGQTAYDIA 365
            G A+ +  + +G+TA+DI+
Sbjct: 102 HG-ADVNAQDKFGKTAFDIS 120

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 233 VRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH 292
           VR L   N   V   +  GL P HLA+  G + ++   L+     +  ++    G   LH
Sbjct: 30  VRILMA-NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM---GSTPLH 85
Query: 293 VAAKKGRDVSVTHIL--EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAE 350
           +AA  G  + +  +L    +D     +N +D  G+TPLHLAA+ GH  +  +L K G A+
Sbjct: 86  LAALIGH-LEIVEVLLKHGAD-----VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG-AD 138
Query: 351 SDIINFYGQTAYDIA 365
            +  + +G+TA+DI+
Sbjct: 139 VNAQDKFGKTAFDIS 153

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 62/147 (42%), Gaps = 42/147 (28%)
Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
           TP+H AA   HLE V  L + N   V   +  G+ P HLA+  G + V            
Sbjct: 49  TPLHLAAYFGHLEIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLEV------------ 95
Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYF 338
                       + V  K G DV                N  D +G TPLHLAA  GH  
Sbjct: 96  ------------VEVLLKNGADV----------------NANDHNGFTPLHLAANIGHLE 127
Query: 339 VAVILGKDGRAESDIINFYGQTAYDIA 365
           +  +L K G A+ +  + +G+TA+DI+
Sbjct: 128 IVEVLLKHG-ADVNAQDKFGKTAFDIS 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 64/152 (42%), Gaps = 42/152 (27%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
           D    TP+H AA+V HLE V  L   N   V   +  G  P HLA++ G +         
Sbjct: 32  DHYGRTPLHMAAAVGHLEIVEVLLR-NGADVNAVDTNGTTPLHLAASLGHL--------- 81
Query: 274 ENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAAL 333
                           I+ V  K G DV                N  D  G TPL+LAA 
Sbjct: 82  ---------------EIVEVLLKYGADV----------------NAKDATGITPLYLAAY 110
Query: 334 YGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
           +GH  +  +L K G A+ +  + +G+TA+DI+
Sbjct: 111 WGHLEIVEVLLKHG-ADVNAQDKFGKTAFDIS 141

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 62/147 (42%), Gaps = 42/147 (28%)
Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
           TP+H AA   HLE V  L + N   V   +  G  P HLA+  G +              
Sbjct: 49  TPLHLAAYWGHLEIVEVLLK-NGADVNAYDTLGSTPLHLAAHFGHL-------------- 93
Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYF 338
                      I+ V  K G DV                N  DD+G TPLHLAA  GH  
Sbjct: 94  ----------EIVEVLLKNGADV----------------NAKDDNGITPLHLAANRGHLE 127
Query: 339 VAVILGKDGRAESDIINFYGQTAYDIA 365
           +  +L K G A+ +  + +G+TA+DI+
Sbjct: 128 IVEVLLKYG-ADVNAQDKFGKTAFDIS 153

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
           +TP+HWA    HL  V  L +   D  L  + EG    HLA+  G   ++   + K    
Sbjct: 77  STPLHWATRQGHLSMVVQLMKYGADPSL-IDGEGCSCIHLAAQFGHTSIVAYLIAK---G 132
Query: 278 HPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHY 337
              ++ +  G   L  AA +   V  T +L   +++  L ++     NT LH A L G+ 
Sbjct: 133 QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK--NTALHWAVLAGNT 190
Query: 338 FVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368
            V  +L + G A  D  N  G++A D+A+Q+
Sbjct: 191 TVISLLLEAG-ANVDAQNIKGESALDLAKQR 220

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 65/153 (42%), Gaps = 42/153 (27%)
Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
           +D   +TP+H AA V HLE V  L +   D V   +  G  P HLA+  G +        
Sbjct: 43  EDTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLAAKRGHLE------- 94
Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
                            I+ V  K G DV                N  D  G+TPLHLAA
Sbjct: 95  -----------------IVEVLLKYGADV----------------NADDTIGSTPLHLAA 121
Query: 333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
             GH  +  +L K G A+ +  + +G+TA+DI+
Sbjct: 122 DTGHLEIVEVLLKYG-ADVNAQDKFGKTAFDIS 153

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 251 GLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEAS 310
           G  P HLA+ NG + V+   LE     +  +     G+  LH+AA+ G    V  +LEA 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 311 DLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347
                 +N  D +G TPLHLAA  GH  V  +L + G
Sbjct: 59  ----ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 42/153 (27%)
Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
           +D+   TP+H AA   HLE V  L +   D V   ++ G  P HLA+  G +        
Sbjct: 43  EDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLE------- 94
Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
                            I+ V  K G DV+ T                D  G TPLHLAA
Sbjct: 95  -----------------IVEVLLKNGADVNAT----------------DTYGFTPLHLAA 121
Query: 333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
             GH  +  +L K G A+ +  + +G+TA+DI+
Sbjct: 122 DAGHLEIVEVLLKYG-ADVNAQDKFGKTAFDIS 153

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 61/147 (41%), Gaps = 42/147 (28%)
Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
           TP+H AA   HLE V  L +   D V   +  G  P HLA+  G +              
Sbjct: 49  TPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLE------------- 94
Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYF 338
                      I+ V  K G DV                N  D  G+TPLHLAA  GH  
Sbjct: 95  -----------IVEVLLKYGADV----------------NAFDMTGSTPLHLAADEGHLE 127
Query: 339 VAVILGKDGRAESDIINFYGQTAYDIA 365
           +  +L K G A+ +  + +G+TA+DI+
Sbjct: 128 IVEVLLKYG-ADVNAQDKFGKTAFDIS 153

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 10/116 (8%)
Query: 251 GLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE-A 309
           G+ P HL   NG + ++   L+     + ++     G   LH+AA +G    V  +L+  
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAADVNASD---KSGWTPLHLAAYRGHLEIVEVLLKYG 103
Query: 310 SDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
           +D     +N MD  G TPLHLAA  GH  +  +L K G A+ +  + +G+TA+DI+
Sbjct: 104 AD-----VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG-ADVNAQDKFGKTAFDIS 153

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDS-VLQKNEEGLYPFHLASANGCVPVMGEFLE 272
           DE+  TP+ WA++   +E VRFL E   D  +L K  E      LAS  G   ++G  LE
Sbjct: 33  DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERES--ALSLASTGGYTDIVGLLLE 90
Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA--SDLTDKLINEMDDDGNTPLHL 330
           ++     N    N G  +L+  A +G  V     L A  +DLT +      D G TP+ L
Sbjct: 91  RD--VDINIYDWNGGTPLLY--AVRGNHVKCVEALLARGADLTTEA-----DSGYTPMDL 141
Query: 331 AALYGHYFVAVIL 343
           A   G+  V  ++
Sbjct: 142 AVALGYRKVQQVI 154

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 10/147 (6%)
Query: 233 VRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH 292
           VR   +   + + Q ++ G  P H A   G   V+   + +    +   + N      LH
Sbjct: 21  VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN---VMNRGDDTPLH 77
Query: 293 VAAKKG-RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAES 351
           +AA  G RD+    +   +D     IN +++ GN PLH A  +G   VA  L  +G A  
Sbjct: 78  LAASHGHRDIVQKLLQYKAD-----INAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALV 131
Query: 352 DIINFYGQTAYDIAEQQYAKIIPEFSE 378
            I N YG+   D A+    +++ E +E
Sbjct: 132 SICNKYGEMPVDKAKAPLRELLRERAE 158

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 275 NMPHPNELFNNK-GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAAL 333
           N  H N++ + K G   LHVAA KG     T +L+        +N  D DG TPLH AA 
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKG----YTEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241
Query: 334 YGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSE 378
           +G      IL ++   + + +N  GQTA+D+A++     + E  +
Sbjct: 242 WGKEEACRILVEN-LCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 10/147 (6%)
Query: 233 VRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH 292
           VR   +   + + Q ++ G  P H A   G   V+   + +    +   + N      LH
Sbjct: 16  VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN---VMNRGDDTPLH 72
Query: 293 VAAKKG-RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAES 351
           +AA  G RD+    +   +D     IN +++ GN PLH A  +G   VA  L  +G A  
Sbjct: 73  LAASHGHRDIVQKLLQYKAD-----INAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALV 126
Query: 352 DIINFYGQTAYDIAEQQYAKIIPEFSE 378
            I N YG+   D A+    +++ E +E
Sbjct: 127 SICNKYGEMPVDKAKAPLRELLRERAE 153

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 58/133 (43%), Gaps = 42/133 (31%)
Query: 233 VRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH 292
           VR L   N   V  K+E GL P +LA+A+G +                         I+ 
Sbjct: 30  VRILMA-NGADVNAKDEYGLTPLYLATAHGHLE------------------------IVE 64
Query: 293 VAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD 352
           V  K G DV                N +D  G TPLHLAA  GH  +A +L K G A+ +
Sbjct: 65  VLLKNGADV----------------NAVDAIGFTPLHLAAFIGHLEIAEVLLKHG-ADVN 107
Query: 353 IINFYGQTAYDIA 365
             + +G+TA+DI+
Sbjct: 108 AQDKFGKTAFDIS 120

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
           ++P+H AA     + +  L +   ++   +N +   P HLA   G   V+   L+    P
Sbjct: 87  SSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 278 HPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHY 337
           +  +L    G   L  A   G    V  +L+        IN  ++ GNT LH A +  H 
Sbjct: 146 NKKDL---SGNTPLIYACSGGHHELVALLLQHG----ASINASNNKGNTALHEAVIEKHV 198
Query: 338 FVAVILGKDGRAESDIINFYGQTAYDIAEQ-----QYAKIIPEFSENDDDM 383
           FV  +L   G A   ++N   +TA D AEQ     +  +++P    + DD+
Sbjct: 199 FVVELLLLHG-ASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLDDV 248

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKD 346
           G+ +L  AA+ G+D  V  IL A+      +N  D DG TPLHLAA  GH  +  +L K 
Sbjct: 3   GKKLLE-AARAGQDDEV-RILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 57
Query: 347 GRAESDIINFYGQTAYDIA 365
           G A+ +  + +G+TA+DI+
Sbjct: 58  G-ADVNAQDKFGKTAFDIS 75

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 42/133 (31%)
Query: 233 VRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH 292
           VR L   N   V  +++ GL P HLA+       M + LE                 I+ 
Sbjct: 30  VRILMA-NGADVNAEDKVGLTPLHLAA-------MNDHLE-----------------IVE 64
Query: 293 VAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD 352
           V  K G DV                N +D  G TPLHL A+YGH  +  +L K G A+ +
Sbjct: 65  VLLKNGADV----------------NAIDAIGETPLHLVAMYGHLEIVEVLLKHG-ADVN 107
Query: 353 IINFYGQTAYDIA 365
             + +G+TA+DI+
Sbjct: 108 AQDKFGKTAFDIS 120

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	626
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-25
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-30
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-26
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-24
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-24
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-22
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-22
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-20
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-19
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-09
2pnn_A	273	Transient receptor potential cation channel subfa	5e-19
2pnn_A	273	Transient receptor potential cation channel subfa	7e-14
2pnn_A	273	Transient receptor potential cation channel subfa	1e-06
2etb_A	256	Transient receptor potential cation channel subfam	3e-18
2etb_A	256	Transient receptor potential cation channel subfam	3e-17
2etb_A	256	Transient receptor potential cation channel subfam	7e-14
2etb_A	256	Transient receptor potential cation channel subfam	7e-11
2etb_A	256	Transient receptor potential cation channel subfam	3e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-18
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-05
2rfa_A	232	Transient receptor potential cation channel subfa	3e-15
2rfa_A	232	Transient receptor potential cation channel subfa	2e-13
2rfa_A	232	Transient receptor potential cation channel subfa	4e-11
2rfa_A	232	Transient receptor potential cation channel subfa	6e-09
2rfa_A	232	Transient receptor potential cation channel subfa	6e-08
2rfa_A	232	Transient receptor potential cation channel subfa	3e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-14
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-05

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  131 bits (331), Expect = 1e-33
 Identities = 63/403 (15%), Positives = 122/403 (30%), Gaps = 105/403 (26%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLI------TMQNSKGDTPLHVAARDGML 65
                +H+AA    +   +             LI      T+QN  G T LH+A + G +
Sbjct: 19  ENMEKIHVAA---RKGQTDEVR---------RLIETGVSPTIQNRFGCTALHLACKFGCV 66

Query: 66  QTAKILVD---------------CAKRMTSSSQID-VKFLMEMKNVRGNTALHEAL--NA 107
            TAK L                  A     +++ D V  L+E    RG          + 
Sbjct: 67  DTAKYLASVGEVHSLWHGQKPIHLA---VMANKTDLVVALVEGAKERGQMPESLLNECDE 123

Query: 108 LQDAKKDKNKPKEDGVTSL--------DSL--ARSLVSE--DPNASYLMNVDCKSPLYLA 155
            +  +   +     G T+L        + L   + LV     P A    +   ++PL  A
Sbjct: 124 REVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK---DKADETPLMRA 180

Query: 156 VESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDE 215
           +E +N + L+                                ++  +  K    L   ++
Sbjct: 181 MEFRNREALDL-------------------------------MMDTVPSKSSLRLDYANK 209

Query: 216 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKEN 275
           Q N+ +HWA  ++  +      E+  D V  ++ E   P +L+     V +  E L+K +
Sbjct: 210 QGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD 268

Query: 276 MPHPNELFNNKGQNI----------LHVAAKKGRDVSVTHILE--ASDLTDKLINEMDDD 323
           +        + G  +          +  AA   +   +  + E          +    + 
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE------VVRSLNT 322

Query: 324 GNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAE 366
           G              V  +      A     +     +  +++
Sbjct: 323 GAGGAVKRKKKAAPAVKRMKLAPS-APVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  107 bits (269), Expect = 2e-25
 Identities = 50/310 (16%), Positives = 103/310 (33%), Gaps = 70/310 (22%)

Query: 45  ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
               + +    +HVAAR G     + L+         + +       ++N  G TALH A
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLI--------ETGVSP----TIQNRFGCTALHLA 60

Query: 105 LNALQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNED 162
                  K             +D  A+ L S     +         + P++LAV +   D
Sbjct: 61  ------CKFG----------CVD-TAKYLASVGEVHSLW-----HGQKPIHLAVMANKTD 98

Query: 163 ILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMH 222
           ++  ++E     +       G+ P  +  E  +  + +           ++  +  T +H
Sbjct: 99  LVVALVEG--AKER------GQMPESLLNECDEREVNE-------IGSHVKHCKGQTALH 143

Query: 223 WAASV--DHLEGVRFL--YEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
           W   +  ++LE ++ L     +P +   K++    P   A        +   ++      
Sbjct: 144 WCVGLGPEYLEMIKILVQLGASPTA---KDKADETPLMRAMEFRNREALDLMMDTVPSKS 200

Query: 279 ---PNELFNNKGQNILHVAAKKGRDVSVTHILE--ASDLTDKLINEMDDDGNTPLHLAAL 333
               +   N +G + LH A     +      +E          +N  D++   PL+L+  
Sbjct: 201 SLRLDYA-NKQGNSHLHWAILINWEDVAMRFVEMGID------VNMEDNEHTVPLYLSVR 253

Query: 334 YGHYFVAVIL 343
                +   L
Sbjct: 254 AAMVLLTKEL 263

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  121 bits (306), Expect = 9e-30
 Identities = 80/344 (23%), Positives = 124/344 (36%), Gaps = 63/344 (18%)

Query: 45  ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALH-- 102
                  G TPLHVA+  G L   K L+                   + NV+  T LH  
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLL--------QRGASP----NVSNVKVETPLHMA 54

Query: 103 ------EALNALQDAKKDKNKPKEDGVTSL--------DSLARSLVSE--DPNASYLMNV 146
                 E    L   K   N   +D  T L         ++ + L+    +PN +     
Sbjct: 55  ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA---TT 111

Query: 147 DCKSPLYLAVESKNEDILEYILEALPVNDDCDAK-LEGKSPVKVAIELQKLGLLKMMHDK 205
              +PL++A    + + +  +LE             +G +P+ VA +  K+ + +     
Sbjct: 112 AGHTPLHIAAREGHVETVLALLEK---EASQACMTKKGFTPLHVAAKYGKVRVAE----- 163

Query: 206 QPALLL-------IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLA 258
              LLL          +   TP+H A   ++L+ V+ L              G  P H+A
Sbjct: 164 ---LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIA 219

Query: 259 SANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLI 317
           +    V V    L+       N   + +G   LH+AA++G    V  +L   ++      
Sbjct: 220 AKQNQVEVARSLLQYG--GSANAE-SVQGVTPLHLAAQEGHAEMVALLLSKQAN-----G 271

Query: 318 NEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTA 361
           N  +  G TPLHL A  GH  VA +L K G    D     G T 
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTP 314

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  118 bits (299), Expect = 7e-29
 Identities = 80/365 (21%), Positives = 127/365 (34%), Gaps = 99/365 (27%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
           G+T LHIAA      H    +          L+           KG TPLHVAA+ G ++
Sbjct: 113 GHTPLHIAAR---EGHVETVL---------ALLEKEASQACMTKKGFTPLHVAAKYGKVR 160

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL 126
            A++L+                        G T LH A         +          +L
Sbjct: 161 VAELLL--------ERDAHP----NAAGKNGLTPLHVA------VHHN----------NL 192

Query: 127 DSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGK 184
           D + + L+     P++      +  +PL++A +    ++   +L+               
Sbjct: 193 D-IVKLLLPRGGSPHSP---AWNGYTPLHIAAKQNQVEVARSLLQY-------GGSAN-- 239

Query: 185 SPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSV 244
                                       +  Q  TP+H AA   H E V  L     +  
Sbjct: 240 ---------------------------AESVQGVTPLHLAAQEGHAEMVALLLSKQAN-G 271

Query: 245 LQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVT 304
              N+ GL P HL +  G VPV    ++       +      G   LHVA+  G    V 
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHG--VMVDAT-TRMGYTPLHVASHYGNIKLVK 328

Query: 305 HILEA-SDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYD 363
            +L+  +D     +N     G +PLH AA  GH  +  +L K+G A  + ++  G T   
Sbjct: 329 FLLQHQAD-----VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLA 382

Query: 364 IAEQQ 368
           IA++ 
Sbjct: 383 IAKRL 387

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  117 bits (296), Expect = 2e-28
 Identities = 77/367 (20%), Positives = 125/367 (34%), Gaps = 102/367 (27%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
           G T LH+AA         +A           L+            G TPLHVA     L 
Sbjct: 146 GFTPLHVAA---KYGKVRVAE---------LLLERDAHPNAAGKNGLTPLHVAVHHNNLD 193

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL 126
             K+L+                        G T LH A      AK+++    E      
Sbjct: 194 IVKLLL--------PRGGSP----HSPAWNGYTPLHIA------AKQNQ---VE------ 226

Query: 127 DSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGK 184
             +ARSL+      NA    +V   +PL+LA +  + +++  +L          A     
Sbjct: 227 --VARSLLQYGGSANAE---SVQGVTPLHLAAQEGHAEMVALLLSK-------QANGN-- 272

Query: 185 SPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSV 244
                                      + ++   TP+H  A   H+     L +     V
Sbjct: 273 ---------------------------LGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-V 304

Query: 245 LQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVT 304
                 G  P H+AS  G + ++ +FL +      N      G + LH AA++G    VT
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLV-KFLLQHQ-ADVNAK-TKLGYSPLHQAAQQGHTDIVT 361

Query: 305 HILE--ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGR--AESDIINFYGQT 360
            +L+  AS       NE+  DG TPL +A   G+  V  +L       +   + + +  +
Sbjct: 362 LLLKNGAS------PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 415

Query: 361 AYDIAEQ 367
             +  ++
Sbjct: 416 FPETVDE 422

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  111 bits (279), Expect = 2e-26
 Identities = 79/367 (21%), Positives = 130/367 (35%), Gaps = 103/367 (28%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
             T LH AA      H NM            L+       +  + G TPLH+AAR+G ++
Sbjct: 80  DQTPLHCAARI---GHTNMVK---------LLLENNANPNLATTAGHTPLHIAAREGHVE 127

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL 126
           T   L+          +            +G T LH A      AK  K +         
Sbjct: 128 TVLALL--------EKEASQ----ACMTKKGFTPLHVA------AKYGKVR--------- 160

Query: 127 DSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGK 184
             +A  L+     PNA+     +  +PL++AV   N DI++ +L                
Sbjct: 161 --VAELLLERDAHPNAA---GKNGLTPLHVAVHHNNLDIVKLLLPR-------GGSPH-- 206

Query: 185 SPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFL--YEINPD 242
                                             TP+H AA  + +E  R L  Y  + +
Sbjct: 207 ---------------------------SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239

Query: 243 SVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVS 302
               ++ +G+ P HLA+  G   ++   L K+   + N   N  G   LH+ A++G    
Sbjct: 240 ---AESVQGVTPLHLAAQEGHAEMVALLLSKQ--ANGNLG-NKSGLTPLHLVAQEGHVPV 293

Query: 303 VTHILEA-SDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTA 361
              +++         ++     G TPLH+A+ YG+  +   L +   A+ +     G + 
Sbjct: 294 ADVLIKHGVM-----VDATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSP 347

Query: 362 YDIAEQQ 368
              A QQ
Sbjct: 348 LHQAAQQ 354

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 80.2 bits (199), Expect = 4e-16
 Identities = 49/223 (21%), Positives = 82/223 (36%), Gaps = 52/223 (23%)

Query: 145 NVDCK-----SPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLL 199
           +         +PL++A    +  I++ +L+         A                    
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNLLQ-------RGASPN----------------- 41

Query: 200 KMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLAS 259
                       + + ++ TP+H AA   H E  ++L +     V  K ++   P H A+
Sbjct: 42  ------------VSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAA 88

Query: 260 ANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLIN 318
             G   ++   LE     +PN      G   LH+AA++G   +V  +LE  +        
Sbjct: 89  RIGHTNMVKLLLEN--NANPNLA-TTAGHTPLHIAAREGHVETVLALLEKEAS-----QA 140

Query: 319 EMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTA 361
            M   G TPLH+AA YG   VA +L +   A  +     G T 
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGLTP 182

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  105 bits (264), Expect = 8e-25
 Identities = 53/349 (15%), Positives = 110/349 (31%), Gaps = 95/349 (27%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT-----MQNSKGDTPLHVAARDGMLQT 67
               LH  AAG       +            +       +      T LH  A +   + 
Sbjct: 94  SPIKLHTEAAG----SYAIT---------EPITRESVNIIDPRHNRTVLHWIASNSSAEK 140

Query: 68  AKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLD 127
           ++ L+    +   ++  DV       +   NT L  A                       
Sbjct: 141 SEDLIVHEAKECIAAGADV----NAMDCDENTPLMLA------VLAR----------RRR 180

Query: 128 SLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKS 185
            L   L+    DP      N   +S L+ A  +++  ++ Y+L +  +  D +       
Sbjct: 181 -LVAYLMKAGADPTIY---NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL----- 231

Query: 186 PVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGV---RFLYE---- 238
                                       D    T +   A  +  + V   + L E    
Sbjct: 232 ----------------------------DRNGMTALMIVAHNEGRDQVASAKLLVEKGAK 263

Query: 239 INPDSVLQ---KNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAA 295
           ++ D   +   +  +G    H A+    +P++ ++L  E   + ++  +  G+  + +AA
Sbjct: 264 VDYDGAARKDSEKYKGRTALHYAAQVSNMPIV-KYLVGEKGSNKDKQ-DEDGKTPIMLAA 321

Query: 296 KKGR-DVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
           ++GR +V +  I + +      +  +D   +T   LA    H+ +  I 
Sbjct: 322 QEGRIEVVMYLIQQGAS-----VEAVDATDHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  102 bits (256), Expect = 1e-23
 Identities = 57/397 (14%), Positives = 110/397 (27%), Gaps = 118/397 (29%)

Query: 12  SGNTLLHIAAA-GSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKI 70
           S    L  A+  G I+   N                        P      +G       
Sbjct: 36  SSQHSLLEASYDGYIKRQRNEL----------------QHYSLYPNPQGYGNGNDFLGDF 79

Query: 71  LVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALN-------ALQDAKKDKNKPKEDGV 123
                     ++                  LH            +     +         
Sbjct: 80  NH--------TNLQIP----TEPEPESPIKLHTEAAGSYAITEPITRESVNIID-PRHNR 126

Query: 124 TSL----------------DSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILE 165
           T L                   A+  ++   D NA   M+ D  +PL LAV ++   ++ 
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA---MDCDENTPLMLAVLARRRRLVA 183

Query: 166 YILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAA 225
           Y+++A        A                                I ++   + +H AA
Sbjct: 184 YLMKA-------GADPT-----------------------------IYNKSERSALHQAA 207

Query: 226 SVDHLEGVRFL-------YEINPDSVLQKNEEGLYPFHLASANGC--VPVMGEFL----- 271
           +      + ++        +I      + +  G+    + + N         + L     
Sbjct: 208 ANRDFGMMVYMLNSTKLKGDIE-----ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA 262

Query: 272 -EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHL 330
               +     +    KG+  LH AA+    + +   L     ++   ++ D+DG TP+ L
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYAAQVSN-MPIVKYLVGEKGSN--KDKQDEDGKTPIML 319

Query: 331 AALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQ 367
           AA  G   V + L + G A  + ++    TA  +A+ 
Sbjct: 320 AAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQA 355

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 41/251 (16%), Positives = 80/251 (31%), Gaps = 66/251 (26%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLI------TMQNSKGDTPLHVAARDGMLQ 66
            NT L +A    +     +         Y  L+      T+ N    + LH AA +    
Sbjct: 166 ENTPLMLAV---LARRRRLV-------AY--LMKAGADPTIYNKSERSALHQAAANRDFG 213

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL 126
               ++         +   +K  +E  +  G TAL                   +     
Sbjct: 214 MMVYML---------NSTKLKGDIEELDRNGMTALMIVA--------------HNEGRDQ 250

Query: 127 DSLARSLVSE--DPNASYLMNVDCK-----SPLYLAVESKNEDILEYILEALPVN-DDCD 178
            + A+ LV +    +       D +     + L+ A +  N  I++Y++     N D  D
Sbjct: 251 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD 310

Query: 179 AKLEGKSPVKVAIELQKLGLLKMMHDKQPALLL-------IQDEQMNTPMHWAASVDHLE 231
               GK+P+ +A +  ++ ++          L+         D   +T    A + +H  
Sbjct: 311 ED--GKTPIMLAAQEGRIEVVM--------YLIQQGASVEAVDATDHTARQLAQANNHHN 360

Query: 232 GVRFLYEINPD 242
            V       P+
Sbjct: 361 IVDIFDRCRPE 371

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  102 bits (257), Expect = 2e-24
 Identities = 47/306 (15%), Positives = 80/306 (26%), Gaps = 57/306 (18%)

Query: 48  QNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNA 107
               GDT LH+A           L+           +D++      N  G TALH A   
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLG---FSAGHEYLDLQ------NDLGQTALHLA--- 52

Query: 108 LQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILE 165
              A   +                 L +       +        + L+LA   +      
Sbjct: 53  ---AILGE---AS--------TVEKLYAAGAGVLVA---ERGGHTALHLACRVRAHTCAC 95

Query: 166 YILEALPVNDDCDAKLEGKSPVKVAIELQKLGLL---KMMHDKQPALLLI--------QD 214
            +L+  P +    +            +          +   + +              ++
Sbjct: 96  VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155

Query: 215 EQMNTPMHWAASVDHLEGVRFL--YEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
              +TP+H A      E VR L     + +    +   G  P HLA       V+ E L 
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNK--PEPTCGRTPLHLAVEAQAASVL-ELLL 212

Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE--ASDLTDKLINEMDDDGNTPLHL 330
           K     P       G+  L  A  +   +    +    A         E   D  +P   
Sbjct: 213 KAG-ADPTAR-MYGGRTPLGSALLRPNPILARLLRAHGAP------EPEDGGDKLSPCSS 264

Query: 331 AALYGH 336
           +     
Sbjct: 265 SGSDSD 270

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 68.3 bits (168), Expect = 8e-13
 Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 14/155 (9%)

Query: 218 NTPMHWAASVDHLEGVRFL--YEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKEN 275
           +T +H A    H   + FL  +    + +  +N+ G    HLA+  G    + E L    
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV-EKL-YAA 67

Query: 276 MPHPNELFNNKGQNILHVAAKKGRDVSVTHILE---------ASDLTDKLINEMDDDGNT 326
                      G   LH+A +         +L+         +     +  +   D  + 
Sbjct: 68  GAGVLVA-ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126

Query: 327 PLHLAALYGHYFVAVILGKDGRAESDIINFYGQTA 361
           P  + +            +D R + +  N+ G T 
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.5 bits (145), Expect = 7e-10
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 247 KNEEGLYPFHLASANGCVPVMGEFLEKE-NMPHPNELFNNKGQNILHVAAKKGRDVSVTH 305
             E+G    HLA  +   P +   L       + +   N+ GQ  LH+AA  G   +V  
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEK 63

Query: 306 ILE--ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
           +    A       +   +  G+T LHLA     +  A +L
Sbjct: 64  LYAAGAG------VLVAERGGHTALHLACRVRAHTCACVL 97

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 33/182 (18%), Positives = 52/182 (28%), Gaps = 41/182 (22%)

Query: 8   ITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQT 67
            T  + +    + +     N EN         +    +  +N  G TPLHVA      + 
Sbjct: 119 CTPDTSHAPAAVDSQ---PNPENEEEPRDEDWRLQ--LEAENYDGHTPLHVAVIHKDAEM 173

Query: 68  AKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKK----------DKNK 117
            ++L D      + + ++       +   G T LH A      A            D   
Sbjct: 174 VRLLRD------AGADLNKP-----EPTCGRTPLHLA--VEAQAASVLELLLKAGADPTA 220

Query: 118 PKEDGVTSL--------DSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYI 167
               G T L          LAR L +             D  SP   +    + D  +  
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHGAPEPED---GGDKLSPCSSSGSDSDSDNRDEG 277

Query: 168 LE 169
            E
Sbjct: 278 DE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 316 LINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINF---YGQTA 361
           +   + +DG+T LHLA ++ H      L     A  + ++     GQTA
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFS-AGHEYLDLQNDLGQTA 48

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 99.8 bits (250), Expect = 6e-24
 Identities = 60/304 (19%), Positives = 110/304 (36%), Gaps = 83/304 (27%)

Query: 45  ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
             M++    +PLH AA  G +    +LV            ++    +  +    T L EA
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAG--------ANI----DTCSEDQRTPLMEA 51

Query: 105 LNALQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNED 162
                 A+ +           L+   + L+      +     + +  + L+LA +  + +
Sbjct: 52  ------AENN----------HLE-AVKYLIKAGALVDPK---DAEGSTCLHLAAKKGHYE 91

Query: 163 ILEYILE--ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTP 220
           +++Y+L    + VN                                      QD+   TP
Sbjct: 92  VVQYLLSNGQMDVN-------------------------------------CQDDGGWTP 114

Query: 221 MHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPN 280
           M WA    H++ V+ L     D +  ++ E     H A+ +GCV +  E L        +
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIA-EILLAAK-CDLH 171

Query: 281 ELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAALYGHYFV 339
            + N  G + LH+AA++ R   V   L   SD     +   + +G TPL  A+L    + 
Sbjct: 172 AV-NIHGDSPLHIAARENRYDCVVLFLSRDSD-----VTLKNKEGETPLQCASLNSQVWS 225

Query: 340 AVIL 343
           A+ +
Sbjct: 226 ALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 83.2 bits (207), Expect = 3e-18
 Identities = 53/293 (18%), Positives = 105/293 (35%), Gaps = 88/293 (30%)

Query: 84  IDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNAS 141
           ++     +M++    + LH A      A+             +D +   LV    + +  
Sbjct: 2   MNF----KMEHQNKRSPLHAA------AEAG----------HVD-ICHMLVQAGANIDT- 39

Query: 142 YLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKM 201
              + D ++PL  A E+ + + ++Y+++A        A ++ K                 
Sbjct: 40  --CSEDQRTPLMEAAENNHLEAVKYLIKA-------GALVDPK----------------- 73

Query: 202 MHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASAN 261
                       D + +T +H AA   H E V++L       V  +++ G  P   A+  
Sbjct: 74  ------------DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 262 GCVPVMGEFL--------EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDL 312
             V ++ + L         +          +N+    LH AA  G       +L A  D 
Sbjct: 122 KHVDLV-KLLLSKGSDINIR----------DNEENICLHWAAFSGCVDIAEILLAAKCD- 169

Query: 313 TDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
               ++ ++  G++PLH+AA    Y   V+      ++  + N  G+T    A
Sbjct: 170 ----LHAVNIHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.4 bits (140), Expect = 2e-09
 Identities = 41/233 (17%), Positives = 74/233 (31%), Gaps = 75/233 (32%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
           G+T LH+AA    + H    +   L       +  Q+  G TP+  A     +   K+L+
Sbjct: 77  GSTCLHLAAK---KGHY--EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131

Query: 73  DCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARS 132
                   S   D+     +++   N  LH A      A              +D +A  
Sbjct: 132 --------SKGSDI----NIRDNEENICLHWA------AFSG----------CVD-IAEI 162

Query: 133 LVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVA 190
           L++   D +A    N+   SPL++A      D +   L         D+ +  K      
Sbjct: 163 LLAAKCDLHAV---NIHGDSPLHIAARENRYDCVVLFLSR-------DSDVTLK------ 206

Query: 191 IELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDS 243
                                  +++  TP+  A+    +     + +   DS
Sbjct: 207 -----------------------NKEGETPLQCASLNSQVWSALQMSKALQDS 236

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  100 bits (252), Expect = 8e-24
 Identities = 60/331 (18%), Positives = 102/331 (30%), Gaps = 86/331 (25%)

Query: 49  NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNAL 108
             + +  L  A ++  +   + L+            +V      +   G T LH A    
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLL--------EGGANVN---FQEEEGGWTPLHNA---- 46

Query: 109 QDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEY 166
              +              D +   L+    DP        +  +P  LA  + +  +L+ 
Sbjct: 47  --VQMS----------RED-IVELLLRHGADPVLR---KKNGATPFLLAAIAGSVKLLKL 90

Query: 167 ILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAAS 226
            L          A +                                D    T    AA 
Sbjct: 91  FLSK-------GADVN-----------------------------ECDFYGFTAFMEAAV 114

Query: 227 VDHLEGVRFLYE----IN-----PDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
              ++ ++FLY+    +N      +   +  + G      A+  G V V+ + L  E   
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL-KILLDEMGA 173

Query: 278 HPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDK--LINEMDDDGNTPLHLAALYG 335
             N   +N G+N L  A     D  V  I     L D    +N   + G TPL LA    
Sbjct: 174 DVNAC-DNMGRNALIHALLSSDDSDVEAITHL--LLDHGADVNVRGERGKTPLILAVEKK 230

Query: 336 HY-FVAVILGKDGRAESDIINFYGQTAYDIA 365
           H   V  +L ++   E +  +  G+TA  +A
Sbjct: 231 HLGLVQRLLEQEH-IEINDTDSDGKTALLLA 260

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 98.7 bits (247), Expect = 4e-23
 Identities = 51/345 (14%), Positives = 98/345 (28%), Gaps = 91/345 (26%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITM-------QNSKGDTPLHVAARDGML 65
            N LL  A         ++        +   L+         +   G TPLH A +    
Sbjct: 5   DNHLLIKAV---QNEDVDLV-------QQ--LLEGGANVNFQEEEGGWTPLHNAVQMSRE 52

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTS 125
              ++L+            D      ++   G T    A      A             S
Sbjct: 53  DIVELLL--------RHGADP----VLRKKNGATPFLLA------AIAG----------S 84

Query: 126 LDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEG 183
           +  L +  +S+  D N     +    +    A        L+++ +         A +  
Sbjct: 85  VK-LLKLFLSKGADVNEC---DFYGFTAFMEAAVYGKVKALKFLYKR-------GANVNL 133

Query: 184 KSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFL---YEIN 240
           +                    K         +   T +  AA   H+E ++ L      +
Sbjct: 134 R-------------------RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174

Query: 241 PDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK--ENMPHPNELFNNKGQNILHVAAKKG 298
            ++    +  G      A  +     +        ++    N     +G+  L +A +K 
Sbjct: 175 VNA---CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKK 230

Query: 299 RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
             + +   L   +  +  IN+ D DG T L LA       +A +L
Sbjct: 231 H-LGLVQRLLEQEHIE--INDTDSDGKTALLLAVELKLKKIAELL 272

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  100 bits (252), Expect = 3e-23
 Identities = 68/339 (20%), Positives = 112/339 (33%), Gaps = 94/339 (27%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
            +T LH+AA     N   +            L+        ++  G  PLH A   G  +
Sbjct: 58  KSTPLHLAAG---YNRVRIVQ---------LLLQHGADVHAKDKGGLVPLHNACSYGHYE 105

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL 126
             ++L+             V       ++   T LHEA      A K++    E      
Sbjct: 106 VTELLL--------KHGACV----NAMDLWQFTPLHEA------ASKNR---VE------ 138

Query: 127 DSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGK 184
             +   L+S   DP      N   KS + +A   +  + L Y  +             G 
Sbjct: 139 --VCSLLLSHGADPTLV---NCHGKSAVDMAPTPELRERLTYEFK-------------GH 180

Query: 185 SPVKVAIELQKLGLLKMMHDKQPALLLI-------QDEQMNTPMHWAASVDH---LEGVR 234
           S ++ A E             +    L        Q +   T +H A +  H    +   
Sbjct: 181 SLLQAARE---------ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAE 231

Query: 235 FLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVA 294
            L     + V +KN++ + P H+A+      VM E L  ++    N L ++ GQ  LH A
Sbjct: 232 LLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVM-EVL-HKHGAKMNAL-DSLGQTALHRA 287

Query: 295 AKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAA 332
           A  G   +   +L   SD      + +   G T   +  
Sbjct: 288 ALAGHLQTCRLLLSYGSD-----PSIISLQGFTAAQMGN 321

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 79.8 bits (198), Expect = 2e-16
 Identities = 50/325 (15%), Positives = 87/325 (26%), Gaps = 99/325 (30%)

Query: 45  ITMQNSKGDTPLHVAARDG-MLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHE 103
             +        L  AAR G   +   +L            ++        + R +T LH 
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALLT--------PLNVNC----HASDGRKSTPLHL 64

Query: 104 ALNALQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNE 161
           A      A  +           +  + + L+    D +A    +     PL+ A    + 
Sbjct: 65  A------AGYN----------RVR-IVQLLLQHGADVHAK---DKGGLVPLHNACSYGHY 104

Query: 162 DILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPM 221
           ++ E +L+         A +                                D    TP+
Sbjct: 105 EVTELLLKH-------GACVN-----------------------------AMDLWQFTPL 128

Query: 222 HWAASVDHLEGVRFL--YEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHP 279
           H AAS + +E    L  +  +P      N  G     +A        +  +         
Sbjct: 129 HEAASKNRVEVCSLLLSHGADPTL---VNCHGKSAVDMAPTPELRERL-TYE-------- 176

Query: 280 NELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYF- 338
                 KG ++L  A +         +            +      T LH A    H   
Sbjct: 177 -----FKGHSLLQAAREADLAKVKKTLALEII-----NFKQPQSHETALHCAVASLHPKR 226

Query: 339 --VAVILGKDGRAESDIINFYGQTA 361
             VA +L + G A  +  N    T 
Sbjct: 227 KQVAELLLRKG-ANVNEKNKDFMTP 250

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 69.4 bits (171), Expect = 5e-13
 Identities = 51/303 (16%), Positives = 92/303 (30%), Gaps = 93/303 (30%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLI------TMQNSKGDTPLHVAARDGMLQ 66
             T LH AA    +N   +            L+      T+ N  G + + +A    + +
Sbjct: 124 QFTPLHEAA---SKNRVEVCS---------LLLSHGADPTLVNCHGKSAVDMAPTPELRE 171

Query: 67  TAKILVDCAKRMTSSSQID---VKFLME------MKNVRGNTALHEALNALQDAKKDKNK 117
                      + ++ + D   VK  +        +     TALH A            K
Sbjct: 172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCA------VASLHPK 225

Query: 118 PKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVND 175
            K+        +A  L+ +  + N     N D  +PL++A E  + D++E + +      
Sbjct: 226 RKQ--------VAELLLRKGANVNEK---NKDFMTPLHVAAERAHNDVMEVLHKH----- 269

Query: 176 DCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRF 235
              AK+                                D    T +H AA   HL+  R 
Sbjct: 270 --GAKMN-----------------------------ALDSLGQTALHRAALAGHLQTCRL 298

Query: 236 LYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAA 295
           L     D     + +G     + +         + +  E+ P      +   +  L  A+
Sbjct: 299 LLSYGSD-PSIISLQGFTAAQMGNEAV------QQILSESTP-MRTS-DVDYR--LLEAS 347

Query: 296 KKG 298
           K G
Sbjct: 348 KAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 68.7 bits (169), Expect = 1e-12
 Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 40/178 (22%)

Query: 208 ALLLI--------QDEQMNTPMHWAASVDHLEGVRFL---YEINPDSVLQKNEEGLYPFH 256
           AL L           E     +  AA   + E +  L     +N  +    +     P H
Sbjct: 7   ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA---SDGRKSTPLH 63

Query: 257 LASANGCVPVMGEFLEKENMPH---PNELFNNKGQNILHVAAKKGRDVSVTHILEASDLT 313
           LA+    V ++ + L    + H    +   +  G   LH A   G      H     ++T
Sbjct: 64  LAAGYNRVRIV-QLL----LQHGADVHAK-DKGGLVPLHNACSYG------HY----EVT 107

Query: 314 DKLI------NEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
           + L+      N MD    TPLH AA      V  +L   G A+  ++N +G++A D+A
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG-ADPTLVNCHGKSAVDMA 164

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 36/179 (20%), Positives = 57/179 (31%), Gaps = 54/179 (30%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGML 65
           S  T LH A A      + +A           L+        +N    TPLHVAA     
Sbjct: 210 SHETALHCAVASLHPKRKQVAE---------LLLRKGANVNEKNKDFMTPLHVAAERAHN 260

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTS 125
              ++L              +       +  G TALH A      A     +        
Sbjct: 261 DVMEVLH--------KHGAKM----NALDSLGQTALHRA------ALAGHLQ-------- 294

Query: 126 LDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVND-DCDAKL 181
                R L+S   DP+     ++   +   +     NE + + + E+ P+   D D +L
Sbjct: 295 ---TCRLLLSYGSDPSII---SLQGFTAAQMG----NEAVQQILSESTPMRTSDVDYRL 343

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 97.6 bits (244), Expect = 1e-22
 Identities = 68/361 (18%), Positives = 113/361 (31%), Gaps = 109/361 (30%)

Query: 45  ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
           + M ++K      +    G     +  V          +   K    +K   G   L   
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPV--------VKRKKTK----VKFDDGAVFLA-- 46

Query: 105 LNALQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNED 162
             A      +                  L+    D N +   NVD  + L+ A    N D
Sbjct: 47  --ACSSGDTE--------------EVLRLLERGADINYA---NVDGLTALHQACIDDNVD 87

Query: 163 ILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMH 222
           ++++++E         A +                                D +   P+H
Sbjct: 88  MVKFLVEN-------GANIN-----------------------------QPDNEGWIPLH 111

Query: 223 WAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL----------- 271
            AAS  +L+   +L       V   N EG  P  +A       ++ +             
Sbjct: 112 AAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELL-QNEVNRQGVDIEAA 169

Query: 272 ----EKENMPHPNELFNNKGQNI----------LHVAAKKGRDVSVTHIL---EASDLTD 314
               E+  +    +  N+   N           LHVAA KG    V  +L          
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY-TEVLKLLIQARYD---- 224

Query: 315 KLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIP 374
             +N  D DG TPLH AA +G      IL ++   + + +N  GQTA+D+A++     + 
Sbjct: 225 --VNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADEDILGYLE 281

Query: 375 E 375
           E
Sbjct: 282 E 282

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 94.1 bits (235), Expect = 2e-21
 Identities = 57/343 (16%), Positives = 109/343 (31%), Gaps = 70/343 (20%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
                 +         E       + RK      ++   G      A   G  +    L+
Sbjct: 8   QKRNEQLKR---WIGSETDLEPPVVKRKK---TKVKFDDG-AVFLAACSSGDTEEVLRLL 60

Query: 73  DCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARS 132
                       D+       NV G TALH+A         D          ++D + + 
Sbjct: 61  --------ERGADI----NYANVDGLTALHQA------CIDD----------NVD-MVKF 91

Query: 133 LVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEA----LPVNDDCDAKLEGKSP 186
           LV    + N     + +   PL+ A      DI EY++        VN +      G +P
Sbjct: 92  LVENGANINQP---DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE------GDTP 142

Query: 187 VKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQ 246
           + +A E     LL+         +  Q   +         +   +  ++L   + +  ++
Sbjct: 143 LDIAEEEAMEELLQN-------EVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN-DVR 194

Query: 247 KNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHI 306
             + G    H+A+A G   V+ + L  +     N   +  G   LH AA  G++ +   +
Sbjct: 195 HAKSGGTALHVAAAKGYTEVL-KLL-IQARYDVNIK-DYDGWTPLHAAAHWGKEEACRIL 251

Query: 307 LE--ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347
           +E          +  ++  G T   +A      ++  +  K  
Sbjct: 252 VENLCD------MEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 81.4 bits (202), Expect = 4e-17
 Identities = 39/180 (21%), Positives = 65/180 (36%), Gaps = 16/180 (8%)

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
           + D +          +     +             K ++G   F  A ++G    +   L
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKK-TKVKFDDG-AVFLAACSSGDTEEVLRLL 60

Query: 272 EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE--ASDLTDKLINEMDDDGNTPLH 329
           E+      N   N  G   LH A        V  ++E  A+      IN+ D++G  PLH
Sbjct: 61  ERG--ADINY-ANVDGLTALHQACIDDNVDMVKFLVENGAN------INQPDNEGWIPLH 111

Query: 330 LAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF--SENDDDMMTLL 387
            AA  G+  +A  L   G A    +N  G T  DIAE++  + + +   +    D+    
Sbjct: 112 AAASCGYLDIAEYLISQG-AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR 170

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.3 bits (124), Expect = 4e-07
 Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 41/125 (32%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGML 65
           SG T LH+AAA   + +  +            LI       +++  G TPLH AA  G  
Sbjct: 198 SGGTALHVAAA---KGYTEVLK---------LLIQARYDVNIKDYDGWTPLHAAAHWGKE 245

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA----------LNALQDAK-KD 114
           +  +ILV         +  D+    E  N  G TA   A          L   Q+    +
Sbjct: 246 EACRILV--------ENLCDM----EAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSE 293

Query: 115 KNKPK 119
           K + K
Sbjct: 294 KREKK 298

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 96.0 bits (240), Expect = 2e-22
 Identities = 57/307 (18%), Positives = 104/307 (33%), Gaps = 79/307 (25%)

Query: 44  LITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHE 103
           + T  +  GDTPLH+A   G L     LV+    +      ++    ++ N    T LH 
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVN----LFQQGGREL----DIYNNLRQTPLHL 52

Query: 104 ALNALQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNE 161
           A+                       + R LV+    P A    +   ++  +LA E ++ 
Sbjct: 53  AV---------ITTLPS--------VVRLLVTAGASPMAL---DRHGQTAAHLACEHRSP 92

Query: 162 DILEYILEA-LPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTP 220
             L  +L++  P   D +A+                                 +    T 
Sbjct: 93  TCLRALLDSAAPGTLDLEAR---------------------------------NYDGLTA 119

Query: 221 MHWAASVDHLEGVRFLYE--INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
           +H A + +  E V+ L E   + D+V  K+  G  P   A  N  + ++ + L +    +
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIKS--GRSPLIHAVENNSLSMV-QLLLQHG-AN 175

Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILE--ASDLTDKLINEMDDDGNTPLHLAALYGH 336
            N      G + LH A+ +G    V  ++   A        +  +   +TPL +A     
Sbjct: 176 VNAQ-MYSGSSALHSASGRGLLPLVRTLVRSGAD------SSLKNCHNDTPLMVARSRRV 228

Query: 337 YFVAVIL 343
             +    
Sbjct: 229 IDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 62.1 bits (152), Expect = 6e-11
 Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 18/125 (14%)

Query: 246 QKNEEGLYPFHLASANGCVPVMGEFLEKENMPH---PNELFNNKGQNILHVAAKKGRDVS 302
           + +E+G  P H+A   G +P +   L           +   NN  Q  LH+A       S
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAV-HRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTL-PS 60

Query: 303 VTHIL---EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL---GKDGRAESDIINF 356
           V  +L    AS         +D  G T  HLA  +        L      G  + +  N+
Sbjct: 61  VVRLLVTAGAS------PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 114

Query: 357 YGQTA 361
            G TA
Sbjct: 115 DGLTA 119

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 53.6 bits (130), Expect = 3e-08
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 53/166 (31%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSK-GDTPLHVAARDGML 65
           G T LH+A        +          +   L+         + K G +PL  A  +  L
Sbjct: 116 GLTALHVAV---NTECQETV-------QL--LLERGADIDAVDIKSGRSPLIHAVENNSL 163

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTS 125
              ++L+            +V      +   G++ALH A      + +            
Sbjct: 164 SMVQLLL--------QHGANV----NAQMYSGSSALHSA------SGRGL---LP----- 197

Query: 126 LDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169
              L R+LV    D +     N    +PL +A   +  DIL     
Sbjct: 198 ---LVRTLVRSGADSSLK---NCHNDTPLMVARSRRVIDILRGKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 50.1 bits (121), Expect = 6e-07
 Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 30/99 (30%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGML 65
           SG + L  A      N  +M            L+        Q   G + LH A+  G+L
Sbjct: 149 SGRSPLIHAV---ENNSLSMVQ---------LLLQHGANVNAQMYSGSSALHSASGRGLL 196

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
              + LV         S  D      +KN   +T L  A
Sbjct: 197 PLVRTLV--------RSGADS----SLKNCHNDTPLMVA 223

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 316 LINEMDDDGNTPLHLAALYGHYFVAVIL---GKDGRAESDIINFYGQTA 361
           +    D+DG+TPLH+A + G+      L    + G  E DI N   QT 
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP 49

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 18/68 (26%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGML 65
           SG++ LH A+    R    +            L+       ++N   DTPL VA    ++
Sbjct: 182 SGSSALHSAS---GRGLLPLVR---------TLVRSGADSSLKNCHNDTPLMVARSRRVI 229

Query: 66  QTAKILVD 73
              +    
Sbjct: 230 DILRGKAT 237

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 92.9 bits (232), Expect = 3e-21
 Identities = 55/350 (15%), Positives = 92/350 (26%), Gaps = 106/350 (30%)

Query: 6   KTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGML 65
                  G+          IR   N  M                    +P+H AA  G  
Sbjct: 26  GKQGGMDGSKPAGPRDFPGIRLLSNPLMG-------------DAVSDWSPMHEAAIHGHQ 72

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTS 125
            + + L+        S    V     +      + LHEA   L                 
Sbjct: 73  LSLRNLI--------SQGWAV----NIITADHVSPLHEA--CLGGHLS------------ 106

Query: 126 LDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILE--ALPVNDDCDAKL 181
                + L+      N       D  +PL+ A  S + D +  +L+  A         + 
Sbjct: 107 ---CVKILLKHGAQVNGV---TADWHTPLFNACVSGSWDCVNLLLQHGA-----SVQPES 155

Query: 182 EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFL--YEI 239
           +                                    +P+H AA   H+E V  L  Y  
Sbjct: 156 DLA----------------------------------SPIHEAARRGHVECVNSLIAYGG 181

Query: 240 NPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGR 299
           N D    K      P +LA  N     + + LE       N+       + LH   +   
Sbjct: 182 NID---HKISHLGTPLYLACENQQRACVKKLLESG--ADVNQ--GKGQDSPLHAVVRTAS 234

Query: 300 DVSVTHILE--ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347
           +     +++  A           + +G  P+ L          + L ++G
Sbjct: 235 EELACLLMDFGAD------TQAKNAEGKRPVELVPPESP-LAQLFLEREG 277

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 78.7 bits (195), Expect = 3e-16
 Identities = 46/325 (14%), Positives = 89/325 (27%), Gaps = 106/325 (32%)

Query: 52  GDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDA 111
           G  P       G+   +  L+                      V   + +HEA      A
Sbjct: 33  GSKPAGPRDFPGIRLLSNPLMG-------------------DAVSDWSPMHEA------A 67

Query: 112 KKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169
                              R+L+S+    N    +  D  SPL+ A    +   ++ +L+
Sbjct: 68  IHG----------HQL-SLRNLISQGWAVNI---ITADHVSPLHEACLGGHLSCVKILLK 113

Query: 170 ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDH 229
                    A++ G                                  +TP+  A     
Sbjct: 114 H-------GAQVNGV-----------------------------TADWHTPLFNACVSGS 137

Query: 230 LEGVRFLYE----INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNN 285
            + V  L +    + P+S      +   P H A+  G V  +   +      + +    +
Sbjct: 138 WDCVNLLLQHGASVQPES------DLASPIHEAARRGHVECVNSLIAYG--GNIDHK-IS 188

Query: 286 KGQNILHVAAKKGRDVSVTHILEASDLTDKLIN-----EMDDDGNTPLHLAALYGHYFVA 340
                L++A +                  KL+            ++PLH         +A
Sbjct: 189 HLGTPLYLACENQ------QR----ACVKKLLESGADVNQGKGQDSPLHAVVRTASEELA 238

Query: 341 VILGKDGRAESDIINFYGQTAYDIA 365
            +L   G A++   N  G+   ++ 
Sbjct: 239 CLLMDFG-ADTQAKNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 74.5 bits (184), Expect = 6e-15
 Identities = 37/241 (15%), Positives = 64/241 (26%), Gaps = 63/241 (26%)

Query: 112 KKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEA- 170
             D  +   DG           +    N      V   SP++ A    ++  L  ++   
Sbjct: 23  SMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG 82

Query: 171 LPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHL 230
             VN                                     I      +P+H A    HL
Sbjct: 83  WAVN-------------------------------------IITADHVSPLHEACLGGHL 105

Query: 231 EGVRFLYE----INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH---PNELF 283
             V+ L +    +N         +   P   A  +G    +   L    + H        
Sbjct: 106 SCVKILLKHGAQVN-----GVTADWHTPLFNACVSGSWDCV-NLL----LQHGASVQP-- 153

Query: 284 NNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAALYGHYFVAVI 342
            +   + +H AA++G    V  ++    +     I+       TPL+LA           
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGN-----IDHKISHLGTPLYLACENQQRACVKK 208

Query: 343 L 343
           L
Sbjct: 209 L 209

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 61.7 bits (151), Expect = 1e-10
 Identities = 28/144 (19%), Positives = 47/144 (32%), Gaps = 23/144 (15%)

Query: 224 AASVDHLEGVRFL----YEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHP 279
            +S  H      L      +      Q   +G  P       G   +           +P
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLS----------NP 51

Query: 280 NELFNNKGQNILHVAAKKGRDVSVTHILE--ASDLTDKLINEMDDDGNTPLHLAALYGHY 337
                    + +H AA  G  +S+ +++    +      +N +  D  +PLH A L GH 
Sbjct: 52  LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA------VNIITADHVSPLHEACLGGHL 105

Query: 338 FVAVILGKDGRAESDIINFYGQTA 361
               IL K G A+ + +     T 
Sbjct: 106 SCVKILLKHG-AQVNGVTADWHTP 128

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 90.4 bits (225), Expect = 1e-20
 Identities = 31/224 (13%), Positives = 70/224 (31%), Gaps = 24/224 (10%)

Query: 149 KSPLYLAVESKNEDILEYILEALPVNDDCDAKLE-GKSPVKVAIELQKLGLLKMMHDKQP 207
           +  ++ A+ +      + +        D     +   +         + GL+   +    
Sbjct: 13  QVKVFRALYTFEPRTPDELYIE---EGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA-- 67

Query: 208 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYE--INPDSVLQKNEEGLYPFHLASANGCVP 265
                Q E ++ P+H AA   +L  +R   +  +  +     ++ G    + A   G   
Sbjct: 68  ----EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG---LDKAGSTALYWACHGGHKD 120

Query: 266 VMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDG 324
           ++ E L  +     N+  N  G   LH AA KG    V  +L   +       +  + + 
Sbjct: 121 IV-EMLFTQPNIELNQ-QNKLGDTALHAAAWKGYADIVQLLLAKGAR-----TDLRNIEK 173

Query: 325 NTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368
                +A       +         A   + N       + ++ +
Sbjct: 174 KLAFDMATNAACASLLKKKQGTD-AVRTLSNAEDYLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 82.3 bits (204), Expect = 6e-18
 Identities = 37/286 (12%), Positives = 75/286 (26%), Gaps = 78/286 (27%)

Query: 52  GDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDA 111
           G   +  A      +T   L           + D+           +T   +        
Sbjct: 12  GQVKVFRALYTFEPRTPDELY--------IEEGDI----IYITDMSDTNWWKG------- 52

Query: 112 KKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEAL 171
               +K +   + S     +                  +PL+ A +  N   L   L+  
Sbjct: 53  ---TSKGRTGLIPSNYVAEQ-------------AESIDNPLHEAAKRGNLSWLRECLDN- 95

Query: 172 PVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLE 231
                    + G                              D+  +T ++WA    H +
Sbjct: 96  ------RVGVNGL-----------------------------DKAGSTALYWACHGGHKD 120

Query: 232 GVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNIL 291
            V  L+      + Q+N+ G    H A+  G   ++   L K      +   N + +   
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG--ARTDLR-NIEKKLAF 177

Query: 292 HVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHY 337
            +A           +L+    TD +    + +       + L  H+
Sbjct: 178 DMATNAAC----ASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 31/187 (16%), Positives = 60/187 (32%), Gaps = 53/187 (28%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGML 65
           S +  LH AA    R + +         +    +         +  G T L+ A   G  
Sbjct: 72  SIDNPLHEAAK---RGNLSWL-------RE--CLDNRVGVNGLDKAGSTALYWACHGGHK 119

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTS 125
              ++L        +   I++      +N  G+TALH A      A K            
Sbjct: 120 DIVEMLF-------TQPNIEL----NQQNKLGDTALHAA------AWKG----------Y 152

Query: 126 LDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEG 183
            D + + L+++    +     N++ K    +A  +    +L+       V    +A  E 
Sbjct: 153 AD-IVQLLLAKGARTDLR---NIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA--ED 206

Query: 184 KSPVKVA 190
               + +
Sbjct: 207 YLDDEDS 213

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 90.2 bits (225), Expect = 1e-20
 Identities = 62/278 (22%), Positives = 95/278 (34%), Gaps = 67/278 (24%)

Query: 97  GNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYL 154
            N  LH+A        ++              +   L S+          + D + PL+ 
Sbjct: 2   SNYPLHQA------CMEN----------EFFKVQELLHSKPSLLLQK---DQDGRIPLHW 42

Query: 155 AVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQD 214
           +V  +  +I  ++L                                    +   L    D
Sbjct: 43  SVSFQAHEITSFLLS---------------------------------KMENVNLDDYPD 69

Query: 215 EQMNTPMHWAASVDHLEGVRFLYEINPDS-VLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
           +   TP H A SV +LE V+ LY+      + +   +G+   HLA       V  +FL  
Sbjct: 70  DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS-QFL-I 127

Query: 274 ENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE--ASDLTDKLINEMDDDGNTPLHLA 331
           EN        +   Q  LH AA  G    +  +     S      +N  D  G TPL  A
Sbjct: 128 ENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSA-----VNWQDKQGWTPLFHA 181

Query: 332 ALYGHYFVAVIL-GKDGRAESDIINFYGQTAYDIAEQQ 368
              GH   AV+L  K G AE D+++  G  A D+A  +
Sbjct: 182 LAEGHGDAAVLLVEKYG-AEYDLVDNKGAKAEDVALNE 218

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 68.2 bits (168), Expect = 4e-13
 Identities = 44/270 (16%), Positives = 73/270 (27%), Gaps = 92/270 (34%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLI---------TMQNSKGDTPLHVAARDG 63
           G   LH + +        +           FL+            +  G TP H+A   G
Sbjct: 36  GRIPLHWSVS---FQAHEITS---------FLLSKMENVNLDDYPDDSGWTPFHIACSVG 83

Query: 64  MLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGV 123
            L+  K L D         + D+         +G T LH A        K      E   
Sbjct: 84  NLEVVKSLYD------RPLKPDL----NKITNQGVTCLHLA------VGKKW---FE--- 121

Query: 124 TSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKL 181
                +++ L+            +   + PL+ A    +  ++E +              
Sbjct: 122 -----VSQFLIENGASVRIK---DKFNQIPLHRAASVGSLKLIELLCGL----------- 162

Query: 182 EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINP 241
            GKS V                         QD+Q  TP+  A +  H +    L E   
Sbjct: 163 -GKSAVN-----------------------WQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198

Query: 242 DSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
                 + +G     +A          +F 
Sbjct: 199 AEYDLVDNKGAKAEDVALNEQVK----KFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 50.9 bits (123), Expect = 3e-07
 Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 55/166 (33%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
           G T LH+A     +    ++       ++  LI       +++     PLH AA  G L+
Sbjct: 107 GVTCLHLAV---GKKWFEVS-------QF--LIENGASVRIKDKFNQIPLHRAASVGSLK 154

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL 126
             ++L           +  V      ++ +G T L  A        +             
Sbjct: 155 LIELLC-------GLGKSAV----NWQDKQGWTPLFHA------LAEG----------HG 187

Query: 127 DSLARSLVSE---DPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169
           D  A  LV +   + +    ++        +A+   NE + ++ L 
Sbjct: 188 D-AAVLLVEKYGAEYDL---VDNKGAKAEDVAL---NEQVKKFFLN 226

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 90.6 bits (226), Expect = 1e-20
 Identities = 47/302 (15%), Positives = 90/302 (29%), Gaps = 77/302 (25%)

Query: 45  ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
           +T  +      +  A + G+ +  + LV+           DV       +    T LH A
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAG--------YDV----RQPDKENVTLLHWA 49

Query: 105 LNALQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNED 162
                 A  +           +D L +  +S+    +   L      +PL+ A    +  
Sbjct: 50  ------AINN----------RID-LVKYYISKGAIVDQ--LGGDLNSTPLHWATRQGHLS 90

Query: 163 ILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMH 222
           ++  +++         A                                  D +  + +H
Sbjct: 91  MVVQLMKY-------GADPSLI-----------------------------DGEGCSCIH 114

Query: 223 WAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNEL 282
            AA   H   V +L     D V   ++ G+ P   A+           L   N    N  
Sbjct: 115 LAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN-VSVNLG 172

Query: 283 FNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAALYGHYFVAV 341
                   LH A   G    ++ +LEA ++     ++  +  G + L LA    + ++  
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGAN-----VDAQNIKGESALDLAKQRKNVWMIN 227

Query: 342 IL 343
            L
Sbjct: 228 HL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 81.7 bits (203), Expect = 1e-17
 Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 18/153 (11%)

Query: 214 DEQMNTPMHWAASVDHLEGVRFL----YEINPDSVLQKNEEGLYPFHLASANGCVPVMGE 269
           D+     +  A      E  R L    Y++      Q ++E +   H A+ N  + ++  
Sbjct: 6   DDYSTWDIVKATQYGIYERCRELVEAGYDVR-----QPDKENVTLLHWAAINNRIDLVKY 60

Query: 270 FLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPL 328
           ++ K      ++L  +     LH A ++G    V  +++  +D      + +D +G + +
Sbjct: 61  YISKG--AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD-----PSLIDGEGCSCI 113

Query: 329 HLAALYGHYFVAVILGKDGRAESDIINFYGQTA 361
           HLAA +GH  +   L   G  + D+++  G T 
Sbjct: 114 HLAAQFGHTSIVAYLIAKG-QDVDMMDQNGMTP 145

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 66.3 bits (163), Expect = 2e-12
 Identities = 48/269 (17%), Positives = 77/269 (28%), Gaps = 91/269 (33%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLI-------TMQNSKGDTPLHVAARDGML 65
             TLLH AA   I N  ++        KY   I        +      TPLH A R G L
Sbjct: 42  NVTLLHWAA---INNRIDLV-------KY--YISKGAIVDQLGGDLNSTPLHWATRQGHL 89

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTS 125
                L+            D      + +  G + +H A      A+             
Sbjct: 90  SMVVQLM--------KYGADP----SLIDGEGCSCIHLA------AQFG----------H 121

Query: 126 LDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNE-DILEYILEALPVNDDCDAKLE 182
              +   L+++  D +     + +  +PL  A    +  D    +L         +  + 
Sbjct: 122 TS-IVAYLIAKGQDVDMM---DQNGMTPLMWAAYRTHSVDPTRLLLTF-------NVSVN 170

Query: 183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 242
                                DK            NT +HWA    +   +  L E   +
Sbjct: 171 LG-------------------DKY---------HKNTALHWAVLAGNTTVISLLLEAGAN 202

Query: 243 SVLQKNEEGLYPFHLASANGCVPVMGEFL 271
            V  +N +G     LA     V ++   L
Sbjct: 203 -VDAQNIKGESALDLAKQRKNVWMI-NHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 53.2 bits (129), Expect = 5e-08
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 246 QKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTH 305
             ++   +    A+  G      E +E        +  + +   +LH AA   R   V +
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAG--YDVRQ-PDKENVTLLHWAAINNRIDLVKY 60

Query: 306 ILE--ASDLTDKLINEMDDD-GNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTA 361
            +   A       ++++  D  +TPLH A   GH  + V L K G A+  +I+  G + 
Sbjct: 61  YISKGAI------VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG-ADPSLIDGEGCSC 112

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 44.0 bits (105), Expect = 6e-05
 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 1/45 (2%)

Query: 317 INEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTA 361
           +  +DD     +  A  YG Y     L + G  +    +    T 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAG-YDVRQPDKENVTL 45

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.9 bits (97), Expect = 6e-04
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 18/67 (26%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
            NT LH A    +  +  +            L+        QN KG++ L +A +   + 
Sbjct: 177 KNTALHWAV---LAGNTTVI-------SL--LLEAGANVDAQNIKGESALDLAKQRKNVW 224

Query: 67  TAKILVD 73
               L +
Sbjct: 225 MINHLQE 231

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 87.6 bits (218), Expect = 9e-20
 Identities = 53/302 (17%), Positives = 95/302 (31%), Gaps = 79/302 (26%)

Query: 91  EMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDC 148
           +     G++ LH A         ++     +       + R +  +    N     N   
Sbjct: 2   QQLTEDGDSFLHLA------IIHEEKALTME-------VIRQVKGDLAFLNFQ---NNLQ 45

Query: 149 KSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPA 208
           ++PL+LAV +   +I E +L A                          G           
Sbjct: 46  QTPLHLAVITNQPEIAEALLGA--------------------------G----------C 69

Query: 209 LLLIQDEQMNTPMHWAASVDHLEGVRFL-----YEINPDSVLQKNEEGLYPFHLASANGC 263
              ++D + NTP+H A     L  V  L            +   N  G    HLAS +G 
Sbjct: 70  DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129

Query: 264 VPVMGEFLEKENMPH---PNELFNNKGQNILHVAAKKGRDVSVTHILE--ASDLTDKLIN 318
           + ++ E L    +      N      G+  LH+A        V+ +L+  A       +N
Sbjct: 130 LGIV-ELL----VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD------VN 178

Query: 319 EMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSE 378
            +   G +P  L        +   LG+    E+  +    +       +       EF+E
Sbjct: 179 RVTYQGYSPYQLTWGRPSTRIQQQLGQLT-LENLQMLPESEDEESYDTESEFT---EFTE 234

Query: 379 ND 380
           ++
Sbjct: 235 DE 236

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 79.5 bits (197), Expect = 5e-17
 Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 63/268 (23%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATT-LARKYPFLITMQNSKGDTPLHVAARDGMLQTAKIL 71
           G++ LH+A    I   + + M      +     +  QN+   TPLH+A      + A+ L
Sbjct: 8   GDSFLHLAI---IHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 72  VDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLAR 131
           +         +  D     E+++ RGNT LH A          +                
Sbjct: 65  L--------GAGCDP----ELRDFRGNTPLHLAC---------EQGCLA--------SVG 95

Query: 132 SLVSEDPNASYLMNVDCK-----SPLYLAVESKNEDILEYILE--ALPVNDDCDAK--LE 182
            L            +        + L+LA       I+E ++   A     D +A+    
Sbjct: 96  VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA-----DVNAQEPCN 150

Query: 183 GKSPVKVAIELQKLGLLKMMHDKQPALLL-------IQDEQMNTPMHWAASVDHLEGVRF 235
           G++ + +A++LQ   L+         LLL           Q  +P             + 
Sbjct: 151 GRTALHLAVDLQNPDLVS--------LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQ 202

Query: 236 LYEINPDSVLQKNEEGLYPFHLASANGC 263
           L ++  +  LQ   E        + +  
Sbjct: 203 LGQLTLE-NLQMLPESEDEESYDTESEF 229

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 85.6 bits (213), Expect = 1e-19
 Identities = 39/159 (24%), Positives = 56/159 (35%), Gaps = 30/159 (18%)

Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL------ 271
              +       +   VR   +   + + Q ++ G  P H A   G   V+ E L      
Sbjct: 6   MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-EMLIMRGAR 64

Query: 272 --EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL---EASDLTDKLINEMDDDGNT 326
                         N      LH+AA  G    +   L   +A       IN +++ GN 
Sbjct: 65  INVM----------NRGDDTPLHLAASHGH-RDIVQKLLQYKAD------INAVNEHGNV 107

Query: 327 PLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
           PLH A  +G   VA  L  +G A   I N YG+   D A
Sbjct: 108 PLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKA 145

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 72.5 bits (179), Expect = 5e-15
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 20/137 (14%)

Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYE----INPDSVLQKNEEGLYPFHLASANGCVPVMG 268
            D+   +P+HWA        V  L      IN       N     P HLA+++G   ++ 
Sbjct: 35  GDDHGFSPLHWACREGRSAVVEMLIMRGARIN-----VMNRGDDTPLHLAASHGHRDIV- 88

Query: 269 EFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE--ASDLTDKLINEMDDDGNT 326
           + L +      N + N  G   LH A   G+D     ++   A       ++  +  G  
Sbjct: 89  QKLLQYKA-DINAV-NEHGNVPLHYACFWGQDQVAEDLVANGAL------VSICNKYGEM 140

Query: 327 PLHLAALYGHYFVAVIL 343
           P+  A       +    
Sbjct: 141 PVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 65.9 bits (162), Expect = 9e-13
 Identities = 36/261 (13%), Positives = 70/261 (26%), Gaps = 95/261 (36%)

Query: 49  NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNAL 108
           + +    +    R+G     ++ +        +++ D+       +  G + LH A    
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWL-------DNTENDL----NQGDDHGFSPLHWA---- 46

Query: 109 QDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEY 166
              ++               +   L+      N    MN    +PL+LA    + DI++ 
Sbjct: 47  --CREG----------RSA-VVEMLIMRGARINV---MNRGDDTPLHLAASHGHRDIVQK 90

Query: 167 ILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAAS 226
           +L+         A +                                +E  N P+H+A  
Sbjct: 91  LLQY-------KADINAV-----------------------------NEHGNVPLHYACF 114

Query: 227 VDHLEGVRFLYE----INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNEL 282
               +    L      ++       N+ G  P   A A     +              E 
Sbjct: 115 WGQDQVAEDLVANGALVS-----ICNKYGEMPVDKAKAPLRELLR-------------ER 156

Query: 283 FNNKGQNI----LHVAAKKGR 299
               GQN+          KG 
Sbjct: 157 AEKMGQNLNRIPYKDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 62.4 bits (153), Expect = 2e-11
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 11/116 (9%)

Query: 248 NEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL 307
           + E +         G    +  +L+       N+  ++ G + LH A ++GR   V  ++
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDN-TENDLNQ-GDDHGFSPLHWACREGRSAVVEMLI 59

Query: 308 E--ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTA 361
              A       IN M+   +TPLHLAA +GH  +   L +   A+ + +N +G   
Sbjct: 60  MRGAR------INVMNRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVP 108

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 57.4 bits (140), Expect = 9e-10
 Identities = 31/165 (18%), Positives = 49/165 (29%), Gaps = 52/165 (31%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
           G + LH A          +        +   LI       + N   DTPLH+AA  G   
Sbjct: 39  GFSPLHWAC---REGRSAVV-------EM--LIMRGARINVMNRGDDTPLHLAASHGHRD 86

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL 126
             + L+          + D+       N  GN  LH A          +    +      
Sbjct: 87  IVQKLL--------QYKADI----NAVNEHGNVPLHYA------CFWGQ---DQ------ 119

Query: 127 DSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169
             +A  LV+     +     N   + P+  A     E + E   +
Sbjct: 120 --VAEDLVANGALVSIC---NKYGEMPVDKAKAPLRELLRERAEK 159

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 87.5 bits (218), Expect = 1e-19
 Identities = 61/349 (17%), Positives = 100/349 (28%), Gaps = 130/349 (37%)

Query: 11  PSGNTLLHIAAAGSIRNHENMAMATTLARKYP----FLIT----MQNSK---GDTPLHVA 59
           P G T L IA+             +      P      I     + N     G+T LH+A
Sbjct: 8   PDGFTPLMIAS---CSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 60  ARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPK 119
           AR      AK L+         +  D      +++  G T LH A     DA+       
Sbjct: 65  ARYSRSDAAKRLL--------EASADA----NIQDNMGRTPLHAA--VSADAQG------ 104

Query: 120 EDGVTSLDSLARSLVS---EDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDD 176
                    + + L+     D +A      D  +PL LA     E +LE ++ +      
Sbjct: 105 ---------VFQILIRNRATDLDAR---MHDGTTPLILAARLAVEGMLEDLINS------ 146

Query: 177 CDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFL 236
             A +                                D+   + +HWAA+V++++    L
Sbjct: 147 -HADVNAV-----------------------------DDLGKSALHWAAAVNNVDAAVVL 176

Query: 237 YE--INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVA 294
            +   N D    +N     P  LA+  G      + L                  + H A
Sbjct: 177 LKNGANKDM---QNNREETPLFLAAREGSYETA-KVL------------------LDHFA 214

Query: 295 AKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
                                  +  D     P  +A    H+ +  +L
Sbjct: 215 N---------------------RDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 83.3 bits (207), Expect = 4e-18
 Identities = 55/291 (18%), Positives = 96/291 (32%), Gaps = 70/291 (24%)

Query: 84  IDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSL--ARSLVSEDPNAS 141
           +DV     ++   G T L  A      +         +     D+       + +  +  
Sbjct: 1   MDV----NVRGPDGFTPLMIA------SCSGGGLETGNSEEEEDAPAVISDFIYQGASLH 50

Query: 142 YLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKM 201
              +   ++ L+LA      D  + +LEA        A                      
Sbjct: 51  NQTDRTGETALHLAARYSRSDAAKRLLEA-------SADAN------------------- 84

Query: 202 MHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFL-----YEINPDSVLQKNEEGLYPFH 256
                     IQD    TP+H A S D     + L      +++      +  +G  P  
Sbjct: 85  ----------IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD-----ARMHDGTTPLI 129

Query: 257 LASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE--ASDLTD 314
           LA+      ++ E L   +    N + ++ G++ LH AA      +   +L+  A+    
Sbjct: 130 LAARLAVEGML-EDLI-NSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGAN---- 182

Query: 315 KLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
              +  ++   TPL LAA  G Y  A +L     A  DI +   +   DIA
Sbjct: 183 --KDMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIA 230

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 84.8 bits (211), Expect = 2e-19
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 14/151 (9%)

Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
           +  +H  A+   L+ ++       + V + +E G  P   ASA G +  +   LE     
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG--A 60

Query: 278 HPNELFNNKGQNILHVAAKKGRDVSVTHIL---EASDLTDKLINEMDDDGNTPLHLAALY 334
            P+ L   + ++ L +A+  G    +  +L   +        IN  D +G TPL  A   
Sbjct: 61  DPHIL-AKERESALSLASTGGY-TDIVGLLLERDVD------INIYDWNGGTPLLYAVRG 112

Query: 335 GHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
            H      L   G A+       G T  D+A
Sbjct: 113 NHVKCVEALLARG-ADLTTEADSGYTPMDLA 142

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 77.8 bits (193), Expect = 5e-17
 Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 11/150 (7%)

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
             DE+  TP+ WA++   +E VRFL E   D      +E      LAS  G   ++G  L
Sbjct: 31  KPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGGYTDIVGLLL 89

Query: 272 EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHL 330
           E++     N   +  G   L  A +      V  +L   +D     +    D G TP+ L
Sbjct: 90  ERD--VDINIY-DWNGGTPLLYAVRGNHVKCVEALLARGAD-----LTTEADSGYTPMDL 141

Query: 331 AALYGHYFVAVILGKDGRAESDIINFYGQT 360
           A   G+  V  ++      +    N     
Sbjct: 142 AVALGYRKVQQVIENHI-LKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 59.4 bits (145), Expect = 2e-10
 Identities = 37/244 (15%), Positives = 69/244 (28%), Gaps = 76/244 (31%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
            +  +H  AA   +   +        RK   L+   + +G TPL  A+  G ++T + L+
Sbjct: 2   DSLSIHQLAA---QGELDQLKE--HLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL 56

Query: 73  DCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARS 132
                       D      +      +AL  A      +               D +   
Sbjct: 57  --------EWGADP----HILAKERESALSLA------STGG----------YTD-IVGL 87

Query: 133 LVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVA 190
           L+    D N     + +  +PL  AV   +   +E +L          A L         
Sbjct: 88  LLERDVDINIY---DWNGGTPLLYAVRGNHVKCVEALLAR-------GADLT-------- 129

Query: 191 IELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEE 250
                                 + +   TPM  A ++ + +  + +       + Q N  
Sbjct: 130 ---------------------TEADSGYTPMDLAVALGYRKVQQVIENHILK-LFQSNLV 167

Query: 251 GLYP 254
              P
Sbjct: 168 PADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 53.6 bits (130), Expect = 1e-08
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 8/116 (6%)

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
           I  ++  + +  A++  + + V  L E + D +   +  G  P   A     V  +   L
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALL 122

Query: 272 EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTP 327
            +           + G   + +A   G    V  ++E   L    + + +     P
Sbjct: 123 ARG--ADLTTE-ADSGYTPMDLAVALGY-RKVQQVIENHILK---LFQSNLVPADP 171

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 85.2 bits (212), Expect = 4e-19
 Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 27/160 (16%)

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
           ++  ++   +  A   D  +    L +     V + + EG  P ++A  N  + +  + L
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIA-KAL 58

Query: 272 --------EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE--ASDLTDKLINEMD 321
                    +          N+   +    A  +GR   + ++L+    D     +N+ +
Sbjct: 59  IDRGADINLQ----------NSISDSPYLYAGAQGRTEILAYMLKHATPD-----LNKHN 103

Query: 322 DDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTA 361
             G   L  AA  GH     +L +DGR + D  N +G TA
Sbjct: 104 RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA 143

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 71.3 bits (176), Expect = 2e-14
 Identities = 45/304 (14%), Positives = 79/304 (25%), Gaps = 114/304 (37%)

Query: 47  MQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALN 106
           M+  +    L  A +    +  +IL D            V    +  +  GNT L+ A  
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTT--------YQV----DEVDTEGNTPLNIA-- 46

Query: 107 ALQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDIL 164
                  +     E        +A++L+    D N     N    SP   A      +IL
Sbjct: 47  ----VHNND---IE--------IAKALIDRGADINLQ---NSISDSPYLYAGAQGRTEIL 88

Query: 165 EYILE--ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMH 222
            Y+L+     +N                                       +      + 
Sbjct: 89  AYMLKHATPDLN-------------------------------------KHNRYGGNALI 111

Query: 223 WAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNEL 282
            AA   H++ V+ L E   + +  +N+ G      A                        
Sbjct: 112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV----------------------G 149

Query: 283 FNNKGQNILHVAA---KKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFV 339
                Q    +     + G D                 +  D+ G T +  A   G+  +
Sbjct: 150 LREGNQLYQDIVKLLMENGAD----------------QSIKDNSGRTAMDYANQKGYTEI 193

Query: 340 AVIL 343
           + IL
Sbjct: 194 SKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 60.5 bits (148), Expect = 1e-10
 Identities = 37/265 (13%), Positives = 77/265 (29%), Gaps = 94/265 (35%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
              LL  A      + + +        +   L          +++G+TPL++A  +  ++
Sbjct: 6   VGALLEAANQR---DTKKVK-------EI--LQDTTYQVDEVDTEGNTPLNIAVHNNDIE 53

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL 126
            AK L+            D+     ++N   ++    A        + +    E      
Sbjct: 54  IAKALI--------DRGADI----NLQNSISDSPYLYA------GAQGR---TE------ 86

Query: 127 DSLARSLVS---EDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEG 183
             +   ++     D N     N    + L  A E  + D ++ +LE    +         
Sbjct: 87  --ILAYMLKHATPDLNKH---NRYGGNALIPAAEKGHIDNVKLLLEDGRED--------- 132

Query: 184 KSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVD-----HLEGVRFLYE 238
                  I+                    Q++   T +  A  +      + + V+ L E
Sbjct: 133 -------ID-------------------FQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166

Query: 239 INPDSVLQKNEEGLYPFHLASANGC 263
              D    K+  G      A+  G 
Sbjct: 167 NGAD-QSIKDNSGRTAMDYANQKGY 190

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.8 bits (133), Expect = 8e-09
 Identities = 36/185 (19%), Positives = 60/185 (32%), Gaps = 52/185 (28%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
           GNT L+IA      N   +A       K   LI       +QNS  D+P   A   G  +
Sbjct: 39  GNTPLNIAV---HNNDIEIA-------KA--LIDRGADINLQNSISDSPYLYAGAQGRTE 86

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEAL--NALQDAK-------KDKNK 117
               ++         +  D+       N  G  AL  A     + + K       +D + 
Sbjct: 87  ILAYML-------KHATPDL----NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF 135

Query: 118 PKEDGVTSLDSLARSLVSEDPN----ASYLM----NVDCK-----SPLYLAVESKNEDIL 164
             + G T+L   A  L   +         LM    +   K     + +  A +    +I 
Sbjct: 136 QNDFGYTAL-IEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEIS 194

Query: 165 EYILE 169
           + + +
Sbjct: 195 KILAQ 199

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 86.4 bits (214), Expect = 5e-19
 Identities = 47/314 (14%), Positives = 84/314 (26%), Gaps = 78/314 (24%)

Query: 49  NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSS-SQIDVKFLMEMKNVRGNTALHEALNA 107
                  +  A      Q  + L+   +R     +  + K         G T L +A+  
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFK-----DPETGKTCLLKAMLN 64

Query: 108 LQDAKKDKNKPKEDGVTSLDSLARSLVSEDPN---ASYLMNVDCKS-------PLYLAVE 157
           L + + D                  L+            +N             L++A+E
Sbjct: 65  LHNGQND--------------TIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE 110

Query: 158 SKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQM 217
            +N  ++  ++E      D  A   G                      +           
Sbjct: 111 RRNMTLVTLLVEN---GADVQAAANG-------------------DFFKKTKGRPGFYFG 148

Query: 218 NTPMHWAASVDHLEGVRFLYE--INPDSVLQKNEEGLYPFHLASANGCVPV--------M 267
             P+  AA  + L  V+FL +    P  +  ++  G    H         V        M
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208

Query: 268 GEFLEK-----ENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDD 322
              +              E+ N KG   L +AA  G+   + +IL+            + 
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR-----------EI 257

Query: 323 DGNTPLHLAALYGH 336
                 H AA + H
Sbjct: 258 HEPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 71.4 bits (175), Expect = 7e-14
 Identities = 31/219 (14%), Positives = 55/219 (25%), Gaps = 53/219 (24%)

Query: 149 KSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPA 208
           +  ++ AV   N   LE +L  L  +       E K                        
Sbjct: 14  RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKD----------------------- 50

Query: 209 LLLIQDEQMNTPMHWA---ASVDHLEGVRFLYEINPD----------SVLQKNEEGLYPF 255
                 E   T +  A         + +  L ++             S      +G    
Sbjct: 51  -----PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTAL 105

Query: 256 HLASANGCVPVMGEFLEK-----------ENMPHPNELFNNKGQNILHVAAKKGRDVSVT 304
           H+A     + ++   +E                         G+  L +AA   + +++ 
Sbjct: 106 HIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ-LAIV 164

Query: 305 HILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
             L  +      I+  D  GNT LH         V    
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTK 203

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 35/105 (33%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLI-------------TMQNSKGDTPLHVA 59
           GNT+LH            +     +   Y  ++              + N KG TPL +A
Sbjct: 184 GNTVLHALV---EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240

Query: 60  ARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
           A  G +     ++                    + +      H A
Sbjct: 241 ASSGKIGVLAYILQ-------------------REIHEPECRHAA 266

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 84.1 bits (208), Expect = 3e-18
 Identities = 44/292 (15%), Positives = 81/292 (27%), Gaps = 57/292 (19%)

Query: 54  TPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKK 113
             L      G+ +    L++  +  +             +   G T L +A+  LQD   
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAY----TEGSTGKTCLMKAVLNLQDGVN 59

Query: 114 DKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPV 173
               P         +  + LV+      +       S L++A+E ++   ++ ++E    
Sbjct: 60  ACIMPLLQIDKDSGNP-KPLVNAQCTDEFY---QGHSALHIAIEKRSLQCVKLLVEN--- 112

Query: 174 NDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGV 233
             D   +  G+   K        G                      P+  AA     + V
Sbjct: 113 GADVHLRACGRFFQKHQGTCFYFG--------------------ELPLSLAACTKQWDVV 152

Query: 234 RFLYE--INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNIL 291
            +L E    P S+   +  G    H                           N+   + L
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALVMIAD--------------------NSPENSAL 192

Query: 292 HVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
            +    G       +        +L    +  G TPL LAA  G   +   +
Sbjct: 193 VIHMYDGLLQMGARLCPTV----QLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 81.0 bits (200), Expect = 3e-17
 Identities = 45/274 (16%), Positives = 84/274 (30%), Gaps = 46/274 (16%)

Query: 14  NTLLHIAAAGSIRNHENMAMATTLARKYPFL-ITMQNSKGDTPLHVAA---RDGMLQTAK 69
           + L  + + G       +        KY       + S G T L  A    +DG+     
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 70  ILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA--------LNALQDAKKDKNKPKED 121
            L+   K  + + +  V      +  +G++ALH A        +  L +   D +     
Sbjct: 64  PLLQIDKD-SGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH----- 117

Query: 122 GVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAK- 180
                    R+                + PL LA  +K  D++ Y+LE        +A  
Sbjct: 118 --------LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD 169

Query: 181 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEIN 240
             G + +   + +                    +   N+ +        L+    L    
Sbjct: 170 SLGNTVLHALVMIAD------------------NSPENSALVIHMYDGLLQMGARLCPTV 211

Query: 241 PDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKE 274
                  N +GL P  LA+  G + +    L++E
Sbjct: 212 QL-EEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 71.0 bits (174), Expect = 7e-14
 Identities = 28/182 (15%), Positives = 50/182 (27%), Gaps = 39/182 (21%)

Query: 218 NTPMHWAASVD---HLEGVRFLYEINPD----------SVLQKNEEGLYPFHLASANGCV 264
            T +  A           +  L +I+ D              +  +G    H+A     +
Sbjct: 44  KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSL 103

Query: 265 PVMGEFLEK----------ENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEAS---- 310
             +   +E                        G+  L +AA   +   VT++LE      
Sbjct: 104 QCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA 163

Query: 311 --DLTDKL---------INEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQ 359
             + TD L         +   +   N+ L +    G   +   L        +I N  G 
Sbjct: 164 SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV-QLEEISNHQGL 222

Query: 360 TA 361
           T 
Sbjct: 223 TP 224

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 62.1 bits (151), Expect = 7e-11
 Identities = 32/171 (18%), Positives = 52/171 (30%), Gaps = 32/171 (18%)

Query: 13  GNTLLHIAAAGSIRNHENMAM----------ATTLARKYPFLITMQNSKGDTPLHVAARD 62
           G++ LHIA     +                      R +          G+ PL +AA  
Sbjct: 90  GHSALHIAI---EKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146

Query: 63  GMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPK--- 119
                   L++   +  S         +E  +  GNT LH     +      +N      
Sbjct: 147 KQWDVVTYLLENPHQPAS---------LEATDSLGNTVLHAL--VMIADNSPENSALVIH 195

Query: 120 -EDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169
             DG   L  +   L         + N    +PL LA +    +I  +IL+
Sbjct: 196 MYDG---LLQMGARLCPTVQLEE-ISNHQGLTPLKLAAKEGKIEIFRHILQ 242

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 60.2 bits (146), Expect = 3e-10
 Identities = 32/176 (18%), Positives = 51/176 (28%), Gaps = 29/176 (16%)

Query: 219 TPMHWAASVDHLEGVRFLYE-------INPDSVLQKNEEGLYPFHLASANG------CVP 265
             +    S    E +  L E          DS   +   G      A  N       C+ 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 266 VMGEFLEKENMPHP--NELFNNK---GQNILHVAAKKGRDVSVTHILEA---------SD 311
            + +  +    P P  N    ++   G + LH+A +K     V  ++E            
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 312 LTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG--RAESDIINFYGQTAYDIA 365
              K        G  PL LAA    + V   L ++    A  +  +  G T     
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHAL 179

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 81.7 bits (203), Expect = 3e-18
 Identities = 39/171 (22%), Positives = 59/171 (34%), Gaps = 30/171 (17%)

Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL-- 271
           + + +  +  AA    +E V+ L  +   +          P H A+    V V+ E+L  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV-EYLLQ 63

Query: 272 ------EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL---EASDLTDKLINEMDD 322
                  K          +  G   LH A   G    V  +L    A       +N  D 
Sbjct: 64  HGADVHAK----------DKGGLVPLHNACSYGH-YEVAELLVKHGAV------VNVADL 106

Query: 323 DGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKII 373
              TPLH AA  G Y +  +L + G A+    N  G T  D+ +     I 
Sbjct: 107 WKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKDGDTDIQ 156

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 61.3 bits (150), Expect = 3e-11
 Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 13/118 (11%)

Query: 247 KNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHI 306
            N E       A+  G V  + + L      +  +    +    LH AA   R VSV   
Sbjct: 4   GNSEADRQLLEAAKAGDVETV-KKLCTVQSVNCRD-IEGRQSTPLHFAAGYNR-VSVVEY 60

Query: 307 L---EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTA 361
           L    A       ++  D  G  PLH A  YGHY VA +L K G A  ++ + +  T 
Sbjct: 61  LLQHGAD------VHAKDKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTP 111

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 54.7 bits (133), Expect = 6e-09
 Identities = 37/219 (16%), Positives = 66/219 (30%), Gaps = 78/219 (35%)

Query: 49  NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNAL 108
           NS+ D  L  AA+ G ++T K L        +   ++ +        R +T LH A    
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLC-------TVQSVNCR----DIEGRQSTPLHFA---- 49

Query: 109 QDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEY 166
             A  ++             +   L+    D +A    +     PL+ A    + ++ E 
Sbjct: 50  --AGYNR---VS--------VVEYLLQHGADVHAK---DKGGLVPLHNACSYGHYEVAEL 93

Query: 167 ILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAAS 226
           +++         A +                                D    TP+H AA+
Sbjct: 94  LVKH-------GAVVNVA-----------------------------DLWKFTPLHEAAA 117

Query: 227 VDHLEGVRFLYE----INPDSVLQKNEEGLYPFHLASAN 261
               E  + L +           +KN +G  P  L    
Sbjct: 118 KGKYEICKLLLQHGADPT-----KKNRDGNTPLDLVKDG 151

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 48.5 bits (117), Expect = 7e-07
 Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 53/165 (32%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
            +T LH AA     N  ++        +Y  L+        ++  G  PLH A   G  +
Sbjct: 42  QSTPLHFAA---GYNRVSVV-------EY--LLQHGADVHAKDKGGLVPLHNACSYGHYE 89

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL 126
            A++LV             V     + ++   T LHEA      A K K    E      
Sbjct: 90  VAELLV--------KHGAVV----NVADLWKFTPLHEA------AAKGK---YE------ 122

Query: 127 DSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169
             + + L+    DP      N D  +PL L  +  + DI + +  
Sbjct: 123 --ICKLLLQHGADPTKK---NRDGNTPLDLVKD-GDTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 43/259 (16%), Positives = 68/259 (26%), Gaps = 109/259 (42%)

Query: 92  MKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSE---DPNASYLMNVDC 148
           M N   +  L EA      AK             ++   + L +    +           
Sbjct: 3   MGNSEADRQLLEA------AKAG----------DVE-TVKKLCTVQSVNCRDI---EGRQ 42

Query: 149 KSPLYLAVESKNEDILEYILE--ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQ 206
            +PL+ A       ++EY+L+  A     D  AK                          
Sbjct: 43  STPLHFAAGYNRVSVVEYLLQHGA-----DVHAK-------------------------- 71

Query: 207 PALLLIQDEQMNTPMHWAASVDHLEGVRFL--YEINPDSVLQKNEEGLYPFHLASANGCV 264
                  D+    P+H A S  H E    L  +    +     +     P H A+A G  
Sbjct: 72  -------DKGGLVPLHNACSYGHYEVAELLVKHGAVVNV---ADLWKFTPLHEAAAKGKY 121

Query: 265 PVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDG 324
            +  + L                  + H A                        + + DG
Sbjct: 122 EIC-KLL------------------LQHGAD---------------------PTKKNRDG 141

Query: 325 NTPLHLAALYGHYFVAVIL 343
           NTPL L    G   +  +L
Sbjct: 142 NTPLDLVK-DGDTDIQDLL 159

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 81.7 bits (203), Expect = 3e-18
 Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 15/154 (9%)

Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
           +  +H  A+   +  +    E     +   +EEG  P   A+A+G + V+   L+     
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNG--A 60

Query: 278 HPNELFNNKGQNILHVAAKKGR-DVSVTHILE--ASDLTDKLINEMDDDGNTPLHLAALY 334
            P  L     ++ L +A  KG  D+ V  +L+          +NE D +G TPL  A   
Sbjct: 61  DPQLL-GKGRESALSLACSKGYTDI-VKMLLDCGVD------VNEYDWNGGTPLLYAVHG 112

Query: 335 GHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368
            H     +L + G A+  I    G  + D+A   
Sbjct: 113 NHVKCVKMLLESG-ADPTIETDSGYNSMDLAVAL 145

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 73.2 bits (181), Expect = 2e-15
 Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 10/133 (7%)

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
             DE+  TP+ WAA+   +  V FL +   D      +       LA + G   ++   L
Sbjct: 31  HTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSKGYTDIVKMLL 89

Query: 272 EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHL 330
           +       NE  +  G   L  A        V  +LE+ +D          D G   + L
Sbjct: 90  DCG--VDVNEY-DWNGGTPLLYAVHGNHVKCVKMLLESGAD-----PTIETDSGYNSMDL 141

Query: 331 AALYGHYFVAVIL 343
           A   G+  V  ++
Sbjct: 142 AVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 56.6 bits (138), Expect = 1e-09
 Identities = 30/183 (16%), Positives = 52/183 (28%), Gaps = 51/183 (27%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGML 65
           + +  +H  AA   +                  I         + +G TPL  AA  G +
Sbjct: 2   ANSLSVHQLAA---QGEMLYL-------AT--RIEQENVINHTDEEGFTPLMWAAAHGQI 49

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA--------LNALQDAKKDKNK 117
              + L+         +  D     ++      +AL  A        +  L D   D N+
Sbjct: 50  AVVEFLL--------QNGADP----QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97

Query: 118 PKEDGVTSL--------DSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYI 167
              +G T L            + L+    DP           + + LAV      + + I
Sbjct: 98  YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE---TDSGYNSMDLAVALGYRSVQQVI 154

Query: 168 LEA 170
              
Sbjct: 155 ESH 157

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 80.5 bits (200), Expect = 7e-18
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL------ 271
              +  AA     + VR L     D V  ++  G  P HLA+ NG + ++ E L      
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIV-EVLLKNGAD 72

Query: 272 --EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPL 328
                         ++ G   L +AA  G    V  +L+  +D     +N  D +G+TPL
Sbjct: 73  VNAV----------DHAGMTPLRLAALFGHLEIVEVLLKNGAD-----VNANDMEGHTPL 117

Query: 329 HLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
           HLAA++GH  +  +L K+G A+ +  + +G+TA+DI+
Sbjct: 118 HLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 67.8 bits (167), Expect = 2e-13
 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 26/141 (18%)

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
            +D    TP+H AA   HLE V  L +   D V   +  G+ P  LA+  G + ++ E L
Sbjct: 42  AEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIV-EVL 99

Query: 272 --------EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDD 322
                               + +G   LH+AA  G    V  +L+  +D     +N  D 
Sbjct: 100 LKNGADVNAN----------DMEGHTPLHLAAMFGHLEIVEVLLKNGAD-----VNAQDK 144

Query: 323 DGNTPLHLAALYGHYFVAVIL 343
            G T   ++   G+  +A IL
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 57.0 bits (139), Expect = 1e-09
 Identities = 38/236 (16%), Positives = 74/236 (31%), Gaps = 88/236 (37%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
               L  AA       ++         +   L+        +++ G TPLH+AA +G L+
Sbjct: 14  LGKKLLEAA---RAGRDDEV-------RI--LMANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL 126
             ++L+         +  DV       +  G T L  A      A        E      
Sbjct: 62  IVEVLL--------KNGADV----NAVDHAGMTPLRLA------ALFGH---LE------ 94

Query: 127 DSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGK 184
             +   L+    D NA+   +++  +PL+LA    + +I+E +L+         A +  +
Sbjct: 95  --IVEVLLKNGADVNAN---DMEGHTPLHLAAMFGHLEIVEVLLKN-------GADVNAQ 142

Query: 185 SPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEIN 240
                                        D+   T    +    + +    L ++N
Sbjct: 143 -----------------------------DKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.7 bits (115), Expect = 1e-06
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 281 ELFNNKGQNI---LHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAALYGH 336
              ++ G ++   L  AA+ GRD  V  ++   +D     +N  D  G TPLHLAA  GH
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGAD-----VNAEDASGWTPLHLAAFNGH 59

Query: 337 YFVAVILGKDGRAESDIINFYGQTA 361
             +  +L K+G A+ + ++  G T 
Sbjct: 60  LEIVEVLLKNG-ADVNAVDHAGMTP 83

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 77.8 bits (193), Expect = 3e-17
 Identities = 37/162 (22%), Positives = 56/162 (34%), Gaps = 38/162 (23%)

Query: 218 NTPMHWAASVDHLEGVRFLYE----INPDSVLQKNEEGLYPFHLASANGCVPVMGEFL-- 271
              +  AA     + VR L               +  G  P HLA+  G      E L  
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFT------TDWLGTSPLHLAAQYGHFSTT-EVLLR 55

Query: 272 ------EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE--ASDLTDKLINEMDDD 323
                  +              +  LH+AA +G    V  +L+  A       +N  D  
Sbjct: 56  AGVSRDAR----------TKVDRTPLHMAASEGHANIVEVLLKHGAD------VNAKDML 99

Query: 324 GNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
             T LH A  + H  V  +L K G A+    + + +TA+DI+
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDIS 140

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 65.5 bits (161), Expect = 7e-13
 Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 32/142 (22%)

Query: 214 DEQMNTPMHWAASVDHLEGVRFL--YEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
           D    +P+H AA   H      L    ++ D+   + +    P H+A++ G   ++ E L
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA---RTKVDRTPLHMAASEGHANIV-EVL 86

Query: 272 --------EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE--ASDLTDKLINEMD 321
                    K          +      LH A +      V  +++  A       ++   
Sbjct: 87  LKHGADVNAK----------DMLKMTALHWATEHNHQEVVELLIKYGAD------VHTQS 130

Query: 322 DDGNTPLHLAALYGHYFVAVIL 343
               T   ++   G+  +A IL
Sbjct: 131 KFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 54.3 bits (132), Expect = 5e-09
 Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 54/179 (30%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITM-----QNSKGDTPLHVAARDGMLQT 67
               L  AA       ++         +   L+        +  G +PLH+AA+ G   T
Sbjct: 2   LGKKLLEAA---RAGQDDEV-------RI--LMANGAPFTTDWLGTSPLHLAAQYGHFST 49

Query: 68  AKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKK----------DKNK 117
            ++L+         + +      + +     T LH A  A +              D N 
Sbjct: 50  TEVLL--------RAGVSR----DARTKVDRTPLHMA--ASEGHANIVEVLLKHGADVNA 95

Query: 118 PKEDGVTSL--------DSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEY 166
                +T+L          +   L+    D +     +  CK+   +++++ NED+ E 
Sbjct: 96  KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ---SKFCKTAFDISIDNGNEDLAEI 151

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 54.3 bits (132), Expect = 6e-09
 Identities = 36/227 (15%), Positives = 67/227 (29%), Gaps = 81/227 (35%)

Query: 52  GDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDA 111
               L  AAR G     +IL+        ++           +  G + LH A      A
Sbjct: 2   LGKKLLEAARAGQDDEVRILM--------ANGAPFT-----TDWLGTSPLHLA------A 42

Query: 112 KKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169
           +                    L+      +A        ++PL++A    + +I+E +L+
Sbjct: 43  QYGH---FS--------TTEVLLRAGVSRDAR---TKVDRTPLHMAASEGHANIVEVLLK 88

Query: 170 ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDH 229
                    A +  K                             D    T +HWA   +H
Sbjct: 89  -------HGADVNAK-----------------------------DMLKMTALHWATEHNH 112

Query: 230 LEGVRFLYE----INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
            E V  L +    ++      +++     F ++  NG   +  E L+
Sbjct: 113 QEVVELLIKYGADVH-----TQSKFCKTAFDISIDNGNEDLA-EILQ 153

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 79.0 bits (196), Expect = 8e-17
 Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 36/168 (21%)

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFL-----YEINPDSVLQKNEEGLYPFHLASANGCVPV 266
           IQD    TP+H A S D     + L      +++      +  +G  P  LA+      +
Sbjct: 53  IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD-----ARMHDGTTPLILAARLAVEGM 107

Query: 267 MGEFL--------EKENMPHPNELFNNKGQNILHVAAKKGR-DVSVTHILEASDLTDKLI 317
           + E L                    ++ G++ LH AA     D +V  +   ++      
Sbjct: 108 L-EDLINSHADVNAV----------DDLGKSALHWAAAVNNVDAAVVLLKNGAN-----K 151

Query: 318 NEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
           +  ++   TPL LAA  G Y  A +L     A  DI +   +   DIA
Sbjct: 152 DMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIA 198

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 77.1 bits (191), Expect = 3e-16
 Identities = 51/294 (17%), Positives = 83/294 (28%), Gaps = 116/294 (39%)

Query: 48  QNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNA 107
            +  G+T LH+AAR      AK L+         +  D      +++  G T LH A   
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLL--------EASADA----NIQDNMGRTPLHAA--V 66

Query: 108 LQDAKKDKNKPKEDGVTSLDSLARSLVS---EDPNASYLMNVDCKSPLYLAVESKNEDIL 164
             DA+                + + L+     D +A      D  +PL LA     E +L
Sbjct: 67  SADAQG---------------VFQILIRNRATDLDAR---MHDGTTPLILAARLAVEGML 108

Query: 165 EYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWA 224
           E ++          A +                                D+   + +HWA
Sbjct: 109 EDLIN-------SHADVNAV-----------------------------DDLGKSALHWA 132

Query: 225 ASVDHLEGVRFL--YEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNEL 282
           A+V++++    L     N D    +N     P  LA+  G      + L           
Sbjct: 133 AAVNNVDAAVVLLKNGANKDM---QNNREETPLFLAAREGSYETA-KVL----------- 177

Query: 283 FNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGH 336
                  + H A                       +  D     P  +A    H
Sbjct: 178 -------LDHFAN---------------------RDITDHMDRLPRDIAQERMH 203

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 75.5 bits (187), Expect = 1e-15
 Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 14/153 (9%)

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFL--YEINPDSVLQKNEEGLYPFHLASANGCVPVMGE 269
             D    T +H AA     +  + L     + +    ++  G  P H A +     V  +
Sbjct: 20  QTDRTGETALHLAARYSRSDAAKRLLEASADANI---QDNMGRTPLHAAVSADAQGVF-Q 75

Query: 270 FLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPL 328
            L +      +    + G   L +AA+   +  +  ++ + +D     +N +DD G + L
Sbjct: 76  ILIRNRATDLDAR-MHDGTTPLILAARLAVEGMLEDLINSHAD-----VNAVDDLGKSAL 129

Query: 329 HLAALYGHYFVAVILGKDGRAESDIINFYGQTA 361
           H AA   +   AV+L K+G A  D+ N   +T 
Sbjct: 130 HWAAAVNNVDAAVVLLKNG-ANKDMQNNREETP 161

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 63.2 bits (155), Expect = 2e-11
 Identities = 44/272 (16%), Positives = 79/272 (29%), Gaps = 97/272 (35%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGML 65
           +G T LH+AA     +  + A           L+       +Q++ G TPLH A      
Sbjct: 24  TGETALHLAA---RYSRSDAAK---------RLLEASADANIQDNMGRTPLHAAVSADAQ 71

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTS 125
              +IL+        +   D+    + +   G T L  A      A+      +      
Sbjct: 72  GVFQILI-------RNRATDL----DARMHDGTTPLILA------ARLAV---EG----- 106

Query: 126 LDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEG 183
              +   L++   D NA    +   KS L+ A    N D    +L+         A  + 
Sbjct: 107 ---MLEDLINSHADVNAV---DDLGKSALHWAAAVNNVDAAVVLLKN-------GANKDM 153

Query: 184 KSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE----I 239
           +                             + +  TP+  AA     E  + L +     
Sbjct: 154 Q-----------------------------NNREETPLFLAAREGSYETAKVLLDHFANR 184

Query: 240 NPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
           +       +     P  +A       ++   L
Sbjct: 185 D-----ITDHMDRLPRDIAQERMHHDIV-RLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 55.5 bits (135), Expect = 7e-09
 Identities = 36/184 (19%), Positives = 61/184 (33%), Gaps = 56/184 (30%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT-------MQNSKGDTPLHVAARDGML 65
           G T LH A      + + +            LI         +   G TPL +AAR  + 
Sbjct: 58  GRTPLHAAV---SADAQGVFQ---------ILIRNRATDLDARMHDGTTPLILAARLAVE 105

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKK----------DK 115
              + L+        +S  DV       +  G +ALH A  A  +             +K
Sbjct: 106 GMLEDLI--------NSHADV----NAVDDLGKSALHWA--AAVNNVDAAVVLLKNGANK 151

Query: 116 NKPKEDGVTSL------DSL--ARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILE 165
           +       T L       S   A+ L+    + + +   +   + P  +A E  + DI+ 
Sbjct: 152 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT---DHMDRLPRDIAQERMHHDIVR 208

Query: 166 YILE 169
            + E
Sbjct: 209 LLDE 212

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 41.6 bits (99), Expect = 3e-04
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 318 NEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTA 361
           N+ D  G T LHLAA Y     A  L +   A+++I +  G+T 
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTP 61

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 79.1 bits (196), Expect = 2e-16
 Identities = 36/324 (11%), Positives = 84/324 (25%), Gaps = 87/324 (26%)

Query: 45  ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
               +  G +  + A  D  ++    L+        ++         +        LH+A
Sbjct: 24  TFKADVHGHSASYYAIADNNVRLVCTLL--------NAGALK----NLLE--NEFPLHQA 69

Query: 105 LNALQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNED 162
                 A  +     +        + + L+    D +     +    + LY AV+S N  
Sbjct: 70  ------ATLED---TK--------IVKILLFSGLDDSQF---DDKGNTALYYAVDSGNMQ 109

Query: 163 ILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMH 222
            ++  ++        + +L                       K             T  +
Sbjct: 110 TVKLFVKK-------NWRLMFY-------------------GK---------TGWKTSFY 134

Query: 223 WAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNEL 282
            A  ++ +  V +   ++           L   H+   NG V +M   L+       N  
Sbjct: 135 HAVMLNDVSIVSYF--LSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM--TSTNTN 190

Query: 283 FNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVI 342
            +      + +A           I    ++   L    D +  +      L     +A +
Sbjct: 191 NSLLFIPDIKLAIDNK------DI----EMLQALFKY-DINIYSANLENVLLDDAEIAKM 239

Query: 343 LGKDGRAESDIINFYGQTAYDIAE 366
           + +    E    ++          
Sbjct: 240 IIEKH-VEYKSDSYTKDLDIVKNN 262

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 77.2 bits (191), Expect = 8e-16
 Identities = 43/331 (12%), Positives = 81/331 (24%), Gaps = 108/331 (32%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITM---QNSK-GDTPLHVAARDGMLQT 67
            G++  + A A    N+  +            L+     +N    + PLH AA     + 
Sbjct: 30  HGHSASYYAIA---DNNVRLVC---------TLLNAGALKNLLENEFPLHQAATLEDTKI 77

Query: 68  AKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLD 127
            KIL+         S +D        + +GNTAL+ A                    ++ 
Sbjct: 78  VKILL--------FSGLDD----SQFDDKGNTALYYA------VDSG----------NMQ 109

Query: 128 SLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPV 187
              +  V ++    +      K+  Y AV   +  I+ Y L  +P               
Sbjct: 110 -TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST------------- 155

Query: 188 KVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQK 247
                                        + + +H      H++ +  L +         
Sbjct: 156 ------------------------FDLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTN 190

Query: 248 NEEGLYP-FHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNI---LHVAAKKGRDVSV 303
           N     P   LA  N  + ++             +       NI                
Sbjct: 191 NSLLFIPDIKLAIDNKDIEML-------------QALFKYDINIYSANLENVLLDDAEIA 237

Query: 304 THILE--ASDLTDKLINEMDDDGNTPLHLAA 332
             I+E                  +  +    
Sbjct: 238 KMIIEKHVE------YKSDSYTKDLDIVKNN 262

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 21/150 (14%)

Query: 203 HDKQPALLLI------QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNE-EGLYPF 255
             KQ    L        D   ++  ++A + +++  V  L          KN  E  +P 
Sbjct: 11  KSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL----KNLLENEFPL 66

Query: 256 HLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTD 314
           H A+      ++   L        ++ F++KG   L+ A   G   +V   ++       
Sbjct: 67  HQAATLEDTKIVKILLFSG--LDDSQ-FDDKGNTALYYAVDSGNMQTVKLFVKKNWR--- 120

Query: 315 KLINEMDDDG-NTPLHLAALYGHYFVAVIL 343
             +      G  T  + A +     +    
Sbjct: 121 --LMFYGKTGWKTSFYHAVMLNDVSIVSYF 148

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 7/57 (12%)

Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
           G ++  +   K     +   L + D       + D  G++  + A    +  +   L
Sbjct: 1   GMDLSRINTWK--SKQLKSFLSSKD-----TFKADVHGHSASYYAIADNNVRLVCTL 50

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 79.7 bits (196), Expect = 2e-16
 Identities = 42/289 (14%), Positives = 94/289 (32%), Gaps = 39/289 (13%)

Query: 105 LNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESK----N 160
           + AL     + N+ K      L  L    + E P +    + +  S    + + +     
Sbjct: 46  MKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF 105

Query: 161 EDILEYILEALPVND-DCDAKL--EGKSPVKVAIELQKLGLLKMMHDKQPALLL------ 211
           + +L+ + +A P    + +  +   G +P+     +  L L+K         L+      
Sbjct: 106 DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVK--------HLVKHGSNR 157

Query: 212 -IQDEQMNTPMHWAASVDH---LEGVRFLYEINPDSVLQKNEEGLYPFHLA--------- 258
              D    + +  A    +         L +     ++ ++       H           
Sbjct: 158 LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC 217

Query: 259 --SANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKL 316
             +A   + ++  ++ K+   +         +          R  S+   L+   +   +
Sbjct: 218 SAAAKYYLDILMGWIVKKQ--NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM 275

Query: 317 INEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
           +N  D +G+T L++AA  G+  +   L   G A+  I N  G    D  
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 69.3 bits (169), Expect = 6e-13
 Identities = 39/216 (18%), Positives = 73/216 (33%), Gaps = 26/216 (12%)

Query: 49  NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNAL 108
           +  G+TPLH       L+  K LV            +        +  G + L +A    
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLV--------KHGSNR----LYGDNMGESCLVKA---- 171

Query: 109 QDAKKDKNKPKEDGVTSLDSLARSLVSEDPNAS----YLMNVDCKSPLYLAVESKNEDIL 164
              K   N         LD L   L+ ED        +++     +    A +   + ++
Sbjct: 172 --VKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILM 229

Query: 165 EYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLI--QDEQMNTPMH 222
            +I++            E +S        +K  +L+ +  K     ++  QD   +T ++
Sbjct: 230 GWIVKKQ-NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 288

Query: 223 WAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLA 258
            AA + ++  V  L +   D     N+ GL P    
Sbjct: 289 IAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 31/275 (11%), Positives = 85/275 (30%), Gaps = 44/275 (16%)

Query: 93  KNVRGNTALHEALNA--------LQDAKKDKNKPKEDGVTSLDSLARSLVSE---DPNAS 141
           + ++    L   L          L +   ++N            ++   + +   D   +
Sbjct: 59  QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118

Query: 142 YLMNVDCK------SPLYLAVESKNEDILEYILEALPVNDDCDAK-LEGKSPVKVAIELQ 194
             +N++        +PL+      N ++++++++      +       G+S +  A++  
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH---GSNRLYGDNMGESCLVKAVKSV 175

Query: 195 KLGLLKMMH---DKQPALLLIQDEQMNTPMHWAASVDHLEG------------VRFLYEI 239
                       D     L+++D    T +H       + G            + ++ + 
Sbjct: 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 235

Query: 240 NPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGR 299
               +     E     +  +      ++     K  + +     ++ G   L++AA+ G 
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 295

Query: 300 DVSVTHILE--ASDLTDKLINEMDDDGNTPLHLAA 332
              V  +L+  A           +  G  P+   A
Sbjct: 296 ISIVDALLDYGAD------PFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 16/93 (17%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
                     G     +++     L      ++  Q+S GDT L++AAR G +     L+
Sbjct: 246 EKESKPNDKNGE--RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL 303

Query: 73  D-CAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
           D  A                + N  G   +   
Sbjct: 304 DYGAD-------------PFIANKSGLRPVDFG 323

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 76.8 bits (189), Expect = 4e-16
 Identities = 46/255 (18%), Positives = 91/255 (35%), Gaps = 50/255 (19%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFL-----ITMQNSKGDTPLHVAARDGMLQ 66
           S   + ++A +G     + +        +   L      T  +    T LH A   G  +
Sbjct: 6   SNIMICNLAYSG---KLDELK-------ER-ILADKSLATRTDQDSRTALHWACSAGHTE 54

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL 126
             + L+           + V      K+  G + LH A      A    ++         
Sbjct: 55  IVEFLL--------QLGVPV----NDKDDAGWSPLHIA------ASAGXDE--------- 87

Query: 127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSP 186
             + ++L+ +  + +  +N +  +PL+ A      +I   +LE     D  D      + 
Sbjct: 88  --IVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH--YDATA 142

Query: 187 VKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQ 246
           +  A     L ++ ++   + A   IQD + NTP+H A   + +E  +FL       +  
Sbjct: 143 MHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYI 200

Query: 247 KNEEGLYPFHLASAN 261
           +N+E   P  +A   
Sbjct: 201 ENKEEKTPLQVAKGG 215

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 52/233 (22%), Positives = 80/233 (34%), Gaps = 30/233 (12%)

Query: 145 NVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAK-LEGKSPVKVAIELQKLGLLKMMH 203
            V       LA   K +++ E IL              + ++ +  A       +++   
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILAD---KSLATRTDQDSRTALHWACSAGHTEIVE--- 57

Query: 204 DKQPALLLI--------QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPF 255
                  L+        +D+   +P+H AAS    E V+ L       V   N+ G  P 
Sbjct: 58  ------FLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPL 110

Query: 256 HLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDK 315
           H A++     +    LE    P      ++     +H AA KG    V  +L        
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAK---DHYDATAMHRAAAKGNLKMVHILLFYK----A 163

Query: 316 LINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368
             N  D +GNTPLHLA        A  L   G A   I N   +T   +A+  
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEEKTPLQVAKGG 215

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.6 bits (126), Expect = 7e-08
 Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 16/136 (11%)

Query: 245 LQKNEEGLYPFHLASANGCVPVMGEFLEKE-NMPHPNELFNNKGQNILHVAAKKGRDVSV 303
           ++     +   +LA +     +    L  +          +   +  LH A   G    +
Sbjct: 1   MEGCVSNIMICNLAYSGKLDELKERILADKSL---ATRT-DQDSRTALHWACSAGH-TEI 55

Query: 304 THIL---EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQT 360
              L            +N+ DD G +PLH+AA  G   +   L   G A  + +N  G T
Sbjct: 56  VEFLLQLGVP------VNDKDDAGWSPLHIAASAGXDEIVKALLVKG-AHVNAVNQNGCT 108

Query: 361 AYDIAEQQYAKIIPEF 376
               A  +    I   
Sbjct: 109 PLHYAASKNRHEIAVM 124

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 73.2 bits (181), Expect = 2e-15
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 20/155 (12%)

Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
              +  AA+   ++ VR L           N  G     +    G   +    L    + 
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIA-LEL----LK 56

Query: 278 H---PNELFNNKGQNILHVAAKKGRDVSVTHILE--ASDLTDKLINEMDDDGNTPLHLAA 332
               PN   +  G + +H AA+ G   ++  ++E  A       +N  D  G  P+HLA 
Sbjct: 57  QGASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGAD------VNVPDGTGALPIHLAV 109

Query: 333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQ 367
             GH  V   L     ++    +  G T  ++A Q
Sbjct: 110 QEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQ 142

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 66.7 bits (164), Expect = 3e-13
 Identities = 29/161 (18%), Positives = 50/161 (31%), Gaps = 42/161 (26%)

Query: 203 HDKQPALLLIQ-----DEQMN---TPMHWAASVDHLEGVRFLYE----INPDSVLQKNEE 250
             ++   LL +     D       T +              L +     N      ++  
Sbjct: 14  DVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN-----VQDTS 67

Query: 251 GLYPFHLASANGCVPVMGEFL--------EKENMPHPNELFNNKGQNILHVAAKKGRDVS 302
           G  P H A+  G +  + + L                    +  G   +H+A ++G    
Sbjct: 68  GTSPVHDAARTGFLDTL-KVLVEHGADVNVP----------DGTGALPIHLAVQEGHTAV 116

Query: 303 VTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
           V+ +   SD     ++  D  G TPL LA   G   +  IL
Sbjct: 117 VSFLAAESD-----LHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 54.7 bits (133), Expect = 5e-09
 Identities = 35/231 (15%), Positives = 60/231 (25%), Gaps = 89/231 (38%)

Query: 51  KGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALN---- 106
           +    L  AA  G +Q  + L+           +      +  N  G TAL   +     
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLH-------RELVHP----DALNRFGKTALQVMMFGSTA 49

Query: 107 ---ALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDI 163
               L       N     G +                          P++ A  +   D 
Sbjct: 50  IALELLKQGASPNVQDTSGTS--------------------------PVHDAARTGFLDT 83

Query: 164 LEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHW 223
           L+ ++E         A +                              + D     P+H 
Sbjct: 84  LKVLVEH-------GADVN-----------------------------VPDGTGALPIHL 107

Query: 224 AASVDHLEGVRFLYE---INPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
           A    H   V FL     ++     +++  GL P  LA   G   ++ + L
Sbjct: 108 AVQEGHTAVVSFLAAESDLH-----RRDARGLTPLELALQRGAQDLV-DIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 51.3 bits (124), Expect = 7e-08
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 52/165 (31%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGML 65
            G T L +           +A+          L+       +Q++ G +P+H AAR G L
Sbjct: 35  FGKTALQVMM----FGSTAIAL---------ELLKQGASPNVQDTSGTSPVHDAARTGFL 81

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTS 125
            T K+LV            DV     + +  G   +H A       ++         V S
Sbjct: 82  DTLKVLV--------EHGADV----NVPDGTGALPIHLA------VQEGH---TA--VVS 118

Query: 126 LDSLARSLVSE-DPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169
                  L +E D +     +    +PL LA++   +D+++ +  
Sbjct: 119 F------LAAESDLHRR---DARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 286 KGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGK 345
           +  + L  AA +G    V  +L   +L     + ++  G T L +   +G   +A+ L K
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLH-RELVH--PDALNRFGKTALQVMM-FGSTAIALELLK 56

Query: 346 DGRAESDIINFYGQTA 361
            G A  ++ +  G + 
Sbjct: 57  QG-ASPNVQDTSGTSP 71

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 73.7 bits (182), Expect = 2e-15
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 16/151 (10%)

Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
                     H         I  D       E   P+  A+       + + LE  +   
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQLLEDRD--- 68

Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDD-DGNTPLHLAALYGH 336
            + + +  G+  L   A  G D  V  + EA +D     ++  D   G T LH+AA Y  
Sbjct: 69  VDAV-DENGRTALLFVAGLGSDKCVRLLAEAGAD-----LDHRDMRGGLTALHMAAGYVR 122

Query: 337 YFVAVILGKDGRAESDIINFYGQTAYDIAEQ 367
             V   L + G A+ ++ +  G TA ++A +
Sbjct: 123 PEVVEALVELG-ADIEVEDERGLTALELARE 152

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 66.8 bits (164), Expect = 5e-13
 Identities = 28/127 (22%), Positives = 41/127 (32%), Gaps = 12/127 (9%)

Query: 219 TPMHWAASVDHLEGVRFLYE-INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
           TP   AA     + +  L E  + D+    +E G       +  G    +   L  E   
Sbjct: 46  TPWWTAARKADEQALSQLLEDRDVDA---VDENGRTALLFVAGLGSDKCV-RLL-AEAGA 100

Query: 278 HPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAALYGH 336
             +      G   LH+AA   R   V  ++E  +D     I   D+ G T L LA     
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-----IEVEDERGLTALELAREILK 155

Query: 337 YFVAVIL 343
                  
Sbjct: 156 TTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 61.7 bits (151), Expect = 3e-11
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 11/106 (10%)

Query: 238 EINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKK 297
           E+N     +   EG   + +   +G  P                   ++ +     AA+K
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI------AADVVSEYETPWWTAARK 54

Query: 298 GRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
             + +++ +LE  D     ++ +D++G T L   A  G      +L
Sbjct: 55  ADEQALSQLLEDRD-----VDAVDENGRTALLFVAGLGSDKCVRLL 95

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 35/141 (24%)

Query: 49  NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALH------ 102
            S+ +TP   AAR    Q    L++           DV    +  +  G TAL       
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLEDR---------DV----DAVDENGRTALLFVAGLG 87

Query: 103 --EALNALQDAKKDKN-KPKEDGVTSL--------DSLARSLVSE--DPNASYLMNVDCK 149
             + +  L +A  D + +    G+T+L          +  +LV    D       +    
Sbjct: 88  SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE---DERGL 144

Query: 150 SPLYLAVESKNEDILEYILEA 170
           + L LA E          ++ 
Sbjct: 145 TALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 33/216 (15%), Positives = 59/216 (27%), Gaps = 72/216 (33%)

Query: 48  QNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNA 107
              +G     +  +DG   +       A         DV            T    A   
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIA--------ADV-------VSEYETPWWTA--- 51

Query: 108 LQDAKKDKNKPKEDGVTSLDSLARSLVSE-DPNASYLMNVDCKSPLYLAVESKNEDILEY 166
              A+K     ++            L+ + D +A    + + ++ L       ++  +  
Sbjct: 52  ---ARKAD---EQ--------ALSQLLEDRDVDAV---DENGRTALLFVAGLGSDKCVRL 94

Query: 167 ILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAAS 226
           + EA        A L+ +          + G                     T +H AA 
Sbjct: 95  LAEA-------GADLDHRD--------MRGG--------------------LTALHMAAG 119

Query: 227 VDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG 262
               E V  L E+  D +  ++E GL    LA    
Sbjct: 120 YVRPEVVEALVELGAD-IEVEDERGLTALELAREIL 154

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 32/173 (18%), Positives = 57/173 (32%), Gaps = 48/173 (27%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT-----MQNSKGDTPLHVAARDGMLQT 67
             T    AA    +  E              L+        +  G T L   A  G  + 
Sbjct: 44  YETPWWTAAR---KADEQALS---------QLLEDRDVDAVDENGRTALLFVAGLGSDKC 91

Query: 68  AKILVDCAKRMTSSSQIDVKFLMEMKNVR-GNTALHEA--------LNALQDAKKDKNKP 118
            ++L          +  D+    + +++R G TALH A        + AL +   D    
Sbjct: 92  VRLLA--------EAGADL----DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 139

Query: 119 KEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEAL 171
            E G+T+L+ LAR ++   P           +P+        E ++  +   +
Sbjct: 140 DERGLTALE-LAREILKTTP---------KGNPMQFGRRIGLEKVINVLEGQV 182

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 44/296 (14%), Positives = 93/296 (31%), Gaps = 85/296 (28%)

Query: 52  GDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDA 111
           G   L    R  + +T    +        +  + VKF     N      L ++      +
Sbjct: 5   GQVSLPPGKRTNLRKTGSERI--------AHGMRVKF-----NPLPLALLLDS------S 45

Query: 112 KKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169
            +             D L + ++ E  DP+     N +  + L+ AV + + +I++++++
Sbjct: 46  LEG----------EFD-LVQRIIYEVDDPSLP---NDEGITALHNAVCAGHTEIVKFLVQ 91

Query: 170 ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDH 229
                      +                                D    TP+H AAS ++
Sbjct: 92  F-------GVNVNAA-----------------------------DSDGWTPLHCAASCNN 115

Query: 230 LEGVRFL--YEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNE------ 281
           ++  +FL        ++   + +           G      +FL                
Sbjct: 116 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS-QFL-YGVQEKMGIMNKGVI 173

Query: 282 --LFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLI-NEMDDDGNTPLHLAALY 334
             L++ + QN   +  K+G  +++ H  +  D  +       D +G  P +L  LY
Sbjct: 174 YALWDYEPQNDDELPMKEGDCMTIIHREDE-DEIEWWWARLNDKEGYVPRNLLGLY 228

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 11/127 (8%)

Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
              +      +  +             ++ N   L     +S  G   ++ + +    + 
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMR--VKFNPLPLALLLDSSLEGEFDLV-QRI-IYEVD 61

Query: 278 HPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAALYGH 336
            P+   N++G   LH A   G    V  +++   +     +N  D DG TPLH AA   +
Sbjct: 62  DPSLP-NDEGITALHNAVCAGHTEIVKFLVQFGVN-----VNAADSDGWTPLHCAASCNN 115

Query: 337 YFVAVIL 343
             V   L
Sbjct: 116 VQVCKFL 122

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 67.6 bits (166), Expect = 7e-13
 Identities = 27/172 (15%), Positives = 49/172 (28%), Gaps = 25/172 (14%)

Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL------- 271
             +  ++     + V+ +     D     N+EG+   H A   G   ++ +FL       
Sbjct: 39  ALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIV-KFLVQFGVNV 96

Query: 272 -EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEAS-DLTDKLINEMDDDGNTPLH 329
                        ++ G   LH AA          ++E+   +        D        
Sbjct: 97  NAA----------DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM--TYSDMQTAADKC 144

Query: 330 LAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSENDD 381
                G+   +  L      +  I+N     A    E Q    +P   E D 
Sbjct: 145 EEMEEGYTQCSQFLYGVQ-EKMGIMNKGVIYALWDYEPQNDDELP-MKEGDC 194

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 47/207 (22%)

Query: 149 KSPLYLAVESKNEDILEYILE--ALPVNDDCDAKLEGKSPVKVA-----IELQKLGLLKM 201
           +  L     +         +                  + +  +      +L +  ++  
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGM-----RVKFNPLPLALLLDSSLEGEFDLVQR-IIYE 59

Query: 202 MHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE----INPDSVLQKNEEGLYPFHL 257
           + D       + +++  T +H A    H E V+FL +    +N       + +G  P H 
Sbjct: 60  VDDPS-----LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-----AADSDGWTPLHC 109

Query: 258 ASANGCVPVMGEFLEKENMPHPNELFNNKGQN--ILHVAAKKGRDVSVTHILEASDLTDK 315
           A++   V V  +FL  E+      +  +  Q         ++G      +       +  
Sbjct: 110 AASCNNVQVC-KFL-VESGAAVFAMTYSDMQTAADKCEEMEEG------YT----QCSQF 157

Query: 316 LI------NEMDDDGNTPLHLAALYGH 336
           L         M+      L        
Sbjct: 158 LYGVQEKMGIMNKGVIYALWDYEPQND 184

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 10/79 (12%)

Query: 285 NKGQNILHVAAKKGRDVSVTHILEASDLTDK--LINEMDDDGNTPLHLAALYGHYFVAVI 342
             GQ  L    +             S+       +   +      L  ++L G + +   
Sbjct: 3   ITGQVSLPPGKRTN------LRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQR 55

Query: 343 LGKDGRAESDIINFYGQTA 361
           +  +   +  + N  G TA
Sbjct: 56  IIYEV-DDPSLPNDEGITA 73

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 39/197 (19%), Positives = 65/197 (32%), Gaps = 41/197 (20%)

Query: 203 HDKQPALLLI--------QDEQMNTPMHWAASVDHLEGVRFL----YEINPDSVLQKNEE 250
             +  + LL         +     T +H AA  D+LE    L     E+  + +  +  E
Sbjct: 15  DVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYE 74

Query: 251 GLYPFHLASANGCVPVMGEFL-----------EKENMPHPNELFNNKGQNILHVAAKKGR 299
           G    H+A  N  V ++   L                 +        G++ L  AA  G 
Sbjct: 75  GQTALHIAVINQNVNLV-RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133

Query: 300 DVSVTHILE--ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGK---------DGR 348
           +  V  ++E  A       I   D  GNT LH+  L  +   A  +             +
Sbjct: 134 EEIVRLLIEHGAD------IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLK 187

Query: 349 AESDIINFYGQTAYDIA 365
           +   + N  G T + +A
Sbjct: 188 SLELVPNNQGLTPFKLA 204

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 53/303 (17%), Positives = 89/303 (29%), Gaps = 100/303 (33%)

Query: 52  GDTPLHVAARDGMLQT-AKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQD 110
            ++PL +AA++  +Q  +K+L             +V      +   G TALH A  AL D
Sbjct: 3   WESPLLLAAKENDVQALSKLLK--------FEGCEV----HQRGAMGETALHIA--ALYD 48

Query: 111 AKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLM----NVDCKSPLYLAVESKNEDILEY 166
             +                A  L+   P   +        + ++ L++AV ++N +++  
Sbjct: 49  NLE---------------AAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRA 93

Query: 167 ILE--ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWA 224
           +L   A        A+  G         L   G                      P+ +A
Sbjct: 94  LLARGA-----SVSARATGSVFHYRPHNLIYYG--------------------EHPLSFA 128

Query: 225 ASVDHLEGVRFLYE----INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPN 280
           A V   E VR L E    I       ++  G    H+               K       
Sbjct: 129 ACVGSEEIVRLLIEHGADIR-----AQDSLGNTVLHILILQPN---------KTFACQMY 174

Query: 281 ELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVA 340
            L  +          K    V                   ++ G TP  LA + G+  + 
Sbjct: 175 NLLLSYDGGD---HLKSLELVP------------------NNQGLTPFKLAGVEGNIVMF 213

Query: 341 VIL 343
             L
Sbjct: 214 QHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 52/289 (17%), Positives = 85/289 (29%), Gaps = 105/289 (36%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
             + L +AA     N                L         + + G+T LH+AA    L+
Sbjct: 3   WESPLLLAA---KENDVQALSK--------LLKFEGCEVHQRGAMGETALHIAALYDNLE 51

Query: 67  TAKILVDCAKRMTSSSQIDVKFL-MEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTS 125
            A +L+         +  ++ F  M  +   G TALH A                     
Sbjct: 52  AAMVLM--------EAAPELVFEPMTSELYEGQTALHIA------VINQN---VN----- 89

Query: 126 LDSLARSLVSE--DPNA----------SYLMNVDCKSPLYLAVESKNEDILEYILE--AL 171
              L R+L++     +A           + +    + PL  A    +E+I+  ++E  A 
Sbjct: 90  ---LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA- 145

Query: 172 PVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLE 231
               D  A+                                 D   NT +H      +  
Sbjct: 146 ----DIRAQ---------------------------------DSLGNTVLHILILQPNKT 168

Query: 232 GVRFLYE--------IN-PDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
               +Y          +     L  N +GL PF LA   G + VM + L
Sbjct: 169 FACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI-VMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 40/243 (16%), Positives = 71/243 (29%), Gaps = 80/243 (32%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLI--------TMQNSK---GDTPLHVAA 60
            G T LHIAA   + ++   AM          L+            S+   G T LH+A 
Sbjct: 36  MGETALHIAA---LYDNLEAAM---------VLMEAAPELVFEPMTSELYEGQTALHIAV 83

Query: 61  RDGMLQTAKILVD-----CAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDK 115
            +  +   + L+       A+    ++     +        G   L  A      A    
Sbjct: 84  INQNVNLVRALLARGASVSAR----ATGSVFHYRPHNLIYYGEHPLSFA------ACVGS 133

Query: 116 NKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPV 173
              +E        + R L+    D  A    +    + L++ +   N+            
Sbjct: 134 ---EE--------IVRLLIEHGADIRAQ---DSLGNTVLHILILQPNKTF---------- 169

Query: 174 NDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGV 233
                           A ++  L L     D   +L L+ + Q  TP   A    ++   
Sbjct: 170 ----------------ACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMF 213

Query: 234 RFL 236
           + L
Sbjct: 214 QHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 33/172 (19%), Positives = 57/172 (33%), Gaps = 43/172 (25%)

Query: 13  GNTLLHIAAAGSIRNHENMAM----------ATTLARKYPFLITMQNSKGDTPLHVAARD 62
           G T LHIA    I  + N+            A      + +        G+ PL  AA  
Sbjct: 75  GQTALHIAV---INQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131

Query: 63  GMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDG 122
           G  +  ++L+            D+      ++  GNT LH     LQ  K          
Sbjct: 132 GSEEIVRLLI--------EHGADI----RAQDSLGNTVLHIL--ILQPNK--------TF 169

Query: 123 VTSLDSLARSLVS--EDPNA---SYLMNVDCKSPLYLAVESKNEDILEYILE 169
              + +L   L+S     +      + N    +P  LA    N  + +++++
Sbjct: 170 ACQMYNL---LLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL--- 343
            ++ L +AAK+    +++ +L+  +  +  +++    G T LH+AALY +   A++L   
Sbjct: 3   WESPLLLAAKENDVQALSKLLK-FEGCE--VHQRGAMGETALHIAALYDNLEAAMVLMEA 59

Query: 344 GKD-GRAESDIINFYGQTA 361
             +          + GQTA
Sbjct: 60  APELVFEPMTSELYEGQTA 78

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 71.2 bits (176), Expect = 4e-15
 Identities = 45/130 (34%), Positives = 61/130 (46%), Gaps = 30/130 (23%)

Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL------ 271
            TP+H AA   HLE V+ L E   D V  K++ G  P HLA+ NG + V+ + L      
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVV-KLLLEAGAD 60

Query: 272 --EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL---EASDLTDKLINEMDDDGNT 326
              K          +  G+  LH+AA+ G  + V  +L    A       +N  D +G T
Sbjct: 61  VNAK----------DKNGRTPLHLAARNGH-LEVVKLLLEAGAD------VNAKDKNGRT 103

Query: 327 PLHLAALYGH 336
           PLHLAA  GH
Sbjct: 104 PLHLAARNGH 113

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 52.3 bits (127), Expect = 2e-08
 Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 52/167 (31%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITM------QNSKGDTPLHVAARDGML 65
           +G T LH+AA      H  +        K   L+        ++  G TPLH+AAR+G L
Sbjct: 1   NGRTPLHLAA---RNGHLEVV-------KL--LLEAGADVNAKDKNGRTPLHLAARNGHL 48

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTS 125
           +  K+L+         +  DV      K+  G T LH A      A+             
Sbjct: 49  EVVKLLL--------EAGADV----NAKDKNGRTPLHLA------ARNG----------H 80

Query: 126 LDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEA 170
           L+ + + L+    D NA    + + ++PL+LA  + + ++++ +LEA
Sbjct: 81  LE-VVKLLLEAGADVNAK---DKNGRTPLHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 48.5 bits (117), Expect = 4e-07
 Identities = 50/220 (22%), Positives = 76/220 (34%), Gaps = 101/220 (45%)

Query: 52  GDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDA 111
           G TPLH+AAR+G L+  K+L++                              A       
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE----------------------------AGA------- 26

Query: 112 KKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEAL 171
             D N   ++G T                          PL+LA  + + ++++ +LEA 
Sbjct: 27  --DVNAKDKNGRT--------------------------PLHLAARNGHLEVVKLLLEA- 57

Query: 172 PVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLE 231
                  A +  K                             D+   TP+H AA   HLE
Sbjct: 58  ------GADVNAK-----------------------------DKNGRTPLHLAARNGHLE 82

Query: 232 GVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
            V+ L E   D V  K++ G  P HLA+ NG + V+ + L
Sbjct: 83  VVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVV-KLL 120

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 73.2 bits (181), Expect = 4e-15
 Identities = 35/168 (20%), Positives = 56/168 (33%), Gaps = 37/168 (22%)

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
            +D    TP+  A  +     +  L E     +  K+ EG      A  N  + +  E L
Sbjct: 30  YRDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIA-EKL 87

Query: 272 --------EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLI------ 317
                    K          +  G+  L  +   G         E S     L+      
Sbjct: 88  LSKGSNVNTK----------DFSGKTPLMWSIIFGY-------SEMSYF---LLEHGANV 127

Query: 318 NEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
           N+ + +G TPL +A+ YG   +   L + G A+    +  G TA   A
Sbjct: 128 NDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASA 174

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 68.2 bits (168), Expect = 2e-13
 Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 33/159 (20%)

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
             D+               + + FL          ++     P  +A   G    + + L
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENAI-DKL 54

Query: 272 --------EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDD 322
                   +K          + +G   L  A K  R      +L   S+     +N  D 
Sbjct: 55  VENFDKLEDK----------DIEGSTALIWAVKNNRLGIAEKLLSKGSN-----VNTKDF 99

Query: 323 DGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTA 361
            G TPL  + ++G+  ++  L + G A  +  N  G+T 
Sbjct: 100 SGKTPLMWSIIFGYSEMSYFLLEHG-ANVNDRNLEGETP 137

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 67.0 bits (165), Expect = 5e-13
 Identities = 46/264 (17%), Positives = 75/264 (28%), Gaps = 94/264 (35%)

Query: 93  KNVRGNTALHEA--LNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKS 150
            +  G          +  Q+    +N       T                          
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRT-------------------------- 37

Query: 151 PLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALL 210
           PL +A     E+ ++ ++E          KLE K                          
Sbjct: 38  PLMVACMLGMENAIDKLVE-------NFDKLEDK-------------------------- 64

Query: 211 LIQDEQMNTPMHWAASVDHLEGVRFL--YEINPDSVLQKNEEGLYPFHLASANGCVPVMG 268
              D + +T + WA   + L     L     N ++   K+  G  P   +   G   +  
Sbjct: 65  ---DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT---KDFSGKTPLMWSIIFGYSEMS- 117

Query: 269 EFL--------EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINE 319
            FL        ++          N +G+  L VA+K GR   V  +LE  +D     I+ 
Sbjct: 118 YFLLEHGANVNDR----------NLEGETPLIVASKYGRSEIVKKLLELGAD-----ISA 162

Query: 320 MDDDGNTPLHLAALYGHYFVAVIL 343
            D  G T    A ++G   V  I 
Sbjct: 163 RDLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 63.6 bits (156), Expect = 7e-12
 Identities = 46/253 (18%), Positives = 81/253 (32%), Gaps = 83/253 (32%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
           G  +  I    SI  + +            FL   ++S   TPL VA   GM      LV
Sbjct: 8   GEIVEKIKDEKSINQNLD------------FLRNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 73  DCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARS 132
                    +   +    E K++ G+TAL  A       K ++             +A  
Sbjct: 56  --------ENFDKL----EDKDIEGSTALIWA------VKNNR---LG--------IAEK 86

Query: 133 LVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVA 190
           L+S+  + N     +   K+PL  ++     ++  ++LE         A +  +      
Sbjct: 87  LLSKGSNVNTK---DFSGKTPLMWSIIFGYSEMSYFLLEH-------GANVNDR------ 130

Query: 191 IELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEE 250
                                  + +  TP+  A+     E V+ L E+  D +  ++  
Sbjct: 131 -----------------------NLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLT 166

Query: 251 GLYPFHLASANGC 263
           GL     A   G 
Sbjct: 167 GLTAEASARIFGR 179

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 71.3 bits (176), Expect = 1e-14
 Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 17/152 (11%)

Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
              +  AA+   LE +  L + N + V  +N  G     +    G   +    L    + 
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVM-KLGNPEIA-RRL----LL 58

Query: 278 H---PNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAAL 333
               P+   +  G  ++H AA+ G   ++  +LE  +D     +N  D++GN PLHLAA 
Sbjct: 59  RGANPDL-KDRTGFAVIHDAARAGFLDTLQTLLEFQAD-----VNIEDNEGNLPLHLAAK 112

Query: 334 YGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
            GH  V   L K   +     N  G TA D+A
Sbjct: 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 67.0 bits (165), Expect = 2e-13
 Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 36/145 (24%)

Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYE----INPDSVLQKNEEGLYPFHLASANGCVPVMG 268
           Q+    T +       + E  R L       +      K+  G    H A+  G +  + 
Sbjct: 34  QNGFGRTALQVMKL-GNPEIARRLLLRGANPD-----LKDRTGFAVIHDAARAGFLDTL- 86

Query: 269 EFL--------EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE--ASDLTDKLIN 318
           + L         +          +N+G   LH+AAK+G    V  +++  AS+     + 
Sbjct: 87  QTLLEFQADVNIE----------DNEGNLPLHLAAKEGHLRVVEFLVKHTASN-----VG 131

Query: 319 EMDDDGNTPLHLAALYGHYFVAVIL 343
             +  G+T   LA LYG   V  ++
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 58.9 bits (144), Expect = 2e-10
 Identities = 42/223 (18%), Positives = 69/223 (30%), Gaps = 72/223 (32%)

Query: 51  KGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQD 110
                L  AA  G L+    L+         + ++V      +N  G TAL         
Sbjct: 4   PWGNELASAAARGDLEQLTSLL--------QNNVNV----NAQNGFGRTALQVM------ 45

Query: 111 AKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYIL 168
               K    E        +AR L+    +P+     +    + ++ A  +   D L+ +L
Sbjct: 46  ----KLGNPE--------IARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLL 90

Query: 169 EALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVD 228
           E         A +  +                             D + N P+H AA   
Sbjct: 91  EF-------QADVNIE-----------------------------DNEGNLPLHLAAKEG 114

Query: 229 HLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
           HL  V FL +    +V  +N +G     LA   G   V+   +
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV-SLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 50.8 bits (123), Expect = 1e-07
 Identities = 29/166 (17%), Positives = 50/166 (30%), Gaps = 54/166 (32%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
           G T L +        +  +A           L+       +++  G   +H AAR G L 
Sbjct: 38  GRTALQVMK----LGNPEIAR---------RLLLRGANPDLKDRTGFAVIHDAARAGFLD 84

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL 126
           T + L+          Q DV     +++  GN  LH A      AK+             
Sbjct: 85  TLQTLL--------EFQADV----NIEDNEGNLPLHLA------AKEGH---LR------ 117

Query: 127 DSLARSLVS---EDPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169
             +   LV     +       N    +   LA      +++  +  
Sbjct: 118 --VVEFLVKHTASNVGHR---NHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 10/80 (12%)

Query: 284 NNKGQNILHVAAKKGRDVSVTHILE--ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAV 341
                N L  AA +G    +T +L+   +      +N  +  G T L +    G+  +A 
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVN------VNAQNGFGRTALQVMK-LGNPEIAR 54

Query: 342 ILGKDGRAESDIINFYGQTA 361
            L   G A  D+ +  G   
Sbjct: 55  RLLLRG-ANPDLKDRTGFAV 73

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 40.4 bits (96), Expect = 4e-04
 Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 320 MDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTA 361
           M +     L  AA  G       L ++     +  N +G+TA
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTA 41

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 68.6 bits (169), Expect = 3e-14
 Identities = 25/124 (20%), Positives = 36/124 (29%), Gaps = 18/124 (14%)

Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKE--- 274
           +    WA     L+ V+       D V +  E G  P H A+  G + ++   L K    
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66

Query: 275 NMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE--ASDLTDKLINEMDDDGNTPLHLAA 332
           N P      +      L  A  +G    V  +L   A             DG T      
Sbjct: 67  NAP------DKHHITPLLSAVYEGHVSCVKLLLSKGAD------KTVKGPDGLTAFEATD 114

Query: 333 LYGH 336
               
Sbjct: 115 NQAI 118

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 55.1 bits (134), Expect = 2e-09
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 7/79 (8%)

Query: 284 NNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAALYGHYFVAVI 342
            +        A K G    V   +    D     +N   + G  PLH AA  G   +   
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGED-----VNRTLEGGRKPLHYAADCGQLEILEF 58

Query: 343 LGKDGRAESDIINFYGQTA 361
           L   G A+ +  + +  T 
Sbjct: 59  LLLKG-ADINAPDKHHITP 76

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 51.2 bits (124), Expect = 4e-08
 Identities = 26/136 (19%), Positives = 37/136 (27%), Gaps = 35/136 (25%)

Query: 49  NSKGDTPLHVAARDGMLQTAKILVDC-AKRMTSSSQIDVKFLMEMKNVRGNTALHEA--- 104
            S  D     A ++G L   K  V             DV          G   LH A   
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGE---------DV----NRTLEGGRKPLHYAADC 50

Query: 105 -----LNALQDAKKDKNKPKEDGVTSL--------DSLARSLVSE--DPNASYLMNVDCK 149
                L  L     D N P +  +T L         S  + L+S+  D         D  
Sbjct: 51  GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK---GPDGL 107

Query: 150 SPLYLAVESKNEDILE 165
           +          + +L+
Sbjct: 108 TAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 44.7 bits (107), Expect = 6e-06
 Identities = 20/135 (14%), Positives = 32/135 (23%), Gaps = 50/135 (37%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITM------QNSKGDTPLHVAARDGMLQ 66
            +     A         +         K    +            G  PLH AA  G L+
Sbjct: 7   CDKEFMWAL---KNGDLDEV-------KD--YVAKGEDVNRTLEGGRKPLHYAADCGQLE 54

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKK------------- 113
             + L+            D+       +    T L  A        +             
Sbjct: 55  ILEFLL--------LKGADI----NAPDKHHITPLLSA------VYEGHVSCVKLLLSKG 96

Query: 114 -DKNKPKEDGVTSLD 127
            DK     DG+T+ +
Sbjct: 97  ADKTVKGPDGLTAFE 111

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 69.8 bits (172), Expect = 3e-14
 Identities = 38/164 (23%), Positives = 53/164 (32%), Gaps = 27/164 (16%)

Query: 214 DEQMNTPMHWAASVDHLEGVRFLYE----INPDSVLQKNEEGLYPFHLASANGCVPVMGE 269
            E     +  AA+   +E VR L E     N       N  G  P  +    G   V  E
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPN-----APNSYGRRPIQVM-MMGSARVA-E 61

Query: 270 FLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL---EASDLTDKLINEMDDDGNT 326
            L   +   PN          +H AA++G  +    +L    A       ++  D  G  
Sbjct: 62  LL-LLHGAEPNCADPATLTRPVHDAAREGF-LDTLVVLHRAGAR------LDVRDAWGRL 113

Query: 327 PLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAY----DIAE 366
           P+ LA   GH  VA  L       +   N     A     DI +
Sbjct: 114 PVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 54.8 bits (133), Expect = 5e-09
 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 12/123 (9%)

Query: 247 KNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHI 306
             E        A+A G V  +   LE     +PN   N+ G+  + V       V    +
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEAG--ANPNA-PNSYGRRPIQVMMMGSARV-AELL 63

Query: 307 LEA-SDLTDKLINEMDDDGNT-PLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDI 364
           L   ++      N  D    T P+H AA  G     V+L + G A  D+ + +G+   D+
Sbjct: 64  LLHGAE-----PNCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDL 117

Query: 365 AEQ 367
           AE+
Sbjct: 118 AEE 120

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)

Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYE----INPDSVLQKNEEGL-YPFHLASANGCVPVM 267
            +     P+              L       N       +   L  P H A+  G +  +
Sbjct: 41  PNSYGRRPIQVMMM-GSARVAELLLLHGAEPN-----CADPATLTRPVHDAAREGFLDTL 94

Query: 268 GEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTP 327
              L        +   +  G+  + +A + G    V   L                G+  
Sbjct: 95  -VVL-HRAGARLDVR-DAWGRLPVDLAEELGH-RDVARYL--------RAAAGGTRGSNH 142

Query: 328 LHLAALYGHYFVA 340
             + A  G   + 
Sbjct: 143 ARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 52.1 bits (126), Expect = 3e-08
 Identities = 26/220 (11%), Positives = 48/220 (21%), Gaps = 88/220 (40%)

Query: 51  KGDTPLHVAARDGMLQTAKILVDC-AKRMTSSSQIDVKFLMEMKNVRGNTALHEALN--- 106
                L  AA  G ++  + L++  A         +        N  G   +   +    
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGA---------NP----NAPNSYGRRPIQVMMMGSA 57

Query: 107 ----ALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNED 162
                L     + N      +T                          P++ A      D
Sbjct: 58  RVAELLLLHGAEPNCADPATLT-------------------------RPVHDAAREGFLD 92

Query: 163 ILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMH 222
            L  +  A        A+L+ +                             D     P+ 
Sbjct: 93  TLVVLHRA-------GARLDVR-----------------------------DAWGRLPVD 116

Query: 223 WAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG 262
            A  + H +  R+L                    + +A G
Sbjct: 117 LAEELGHRDVARYLRAAAGG----TRGSN--HARIDAAEG 150

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 40/130 (30%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDT-PLHVAARDGML 65
           G   + +           +A           L+         +    T P+H AAR+G L
Sbjct: 45  GRRPIQVMM----MGSARVAE---------LLLLHGAEPNCADPATLTRPVHDAAREGFL 91

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA--------LNALQDAKKDKNK 117
            T  +L          +   +    ++++  G   +  A           L+ A      
Sbjct: 92  DTLVVLH--------RAGARL----DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG 139

Query: 118 PKEDGVTSLD 127
                + + +
Sbjct: 140 SNHARIDAAE 149

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 69.0 bits (170), Expect = 3e-14
 Identities = 32/135 (23%), Positives = 48/135 (35%), Gaps = 14/135 (10%)

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
           +     +  +  AA+   +E VR L E   D     N  G  P  +    G   V  E L
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVM-MMGSAQVA-ELL 63

Query: 272 EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL---EASDLTDKLINEMDDDGNTPL 328
              +   PN          +H AA++G  +    +L    A       ++  D  G  P+
Sbjct: 64  -LLHGAEPNCADPATLTRPVHDAAREGF-LDTLVVLHRAGAR------LDVCDAWGRLPV 115

Query: 329 HLAALYGHYFVAVIL 343
            LA   GH  +A  L
Sbjct: 116 DLAEEQGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 52.8 bits (128), Expect = 1e-08
 Identities = 29/200 (14%), Positives = 47/200 (23%), Gaps = 82/200 (41%)

Query: 45  ITMQNSKGDTPLHVAARDGMLQTAKILVDC-AKRMTSSSQIDVKFLMEMKNVRGNTALHE 103
           I M     D  L  AA  G ++T + L++  A         D        N  G   +  
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGA---------DP----NALNRFGRRPIQV 51

Query: 104 ALN-------ALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAV 156
            +         L     + N      +T                          P++ A 
Sbjct: 52  MMMGSAQVAELLLLHGAEPNCADPATLT-------------------------RPVHDAA 86

Query: 157 ESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQ 216
                D L  +  A        A+L+                             + D  
Sbjct: 87  REGFLDTLVVLHRA-------GARLD-----------------------------VCDAW 110

Query: 217 MNTPMHWAASVDHLEGVRFL 236
              P+  A    H +  R+L
Sbjct: 111 GRLPVDLAEEQGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 44.7 bits (107), Expect = 8e-06
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 317 INEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTA 361
           I+ +    +  L  AA  G       L + G A+ + +N +G+  
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAG-ADPNALNRFGRRP 48

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 32/99 (32%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDT-PLHVAARDGML 65
           G   + +           +A           L+         +    T P+H AAR+G L
Sbjct: 45  GRRPIQVMM----MGSAQVAE---------LLLLHGAEPNCADPATLTRPVHDAAREGFL 91

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
            T  +L          +   +    ++ +  G   +  A
Sbjct: 92  DTLVVLH--------RAGARL----DVCDAWGRLPVDLA 118

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 69.0 bits (170), Expect = 3e-14
 Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 44/144 (30%)

Query: 218 NTPMHWAASVDHLEGVRFLYE----INPDSVLQKNEEGLYPFHLASANGCVPVMGEFL-- 271
              +  AA     + VR L      +N      K+E GL P +LA+A+G + ++ E L  
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVN-----AKDEYGLTPLYLATAHGHLEIV-EVLLK 68

Query: 272 ------EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLI------NE 319
                             +  G   LH+AA  G        LE +++   L+      N 
Sbjct: 69  NGADVNAV----------DAIGFTPLHLAAFIGH-------LEIAEV---LLKHGADVNA 108

Query: 320 MDDDGNTPLHLAALYGHYFVAVIL 343
            D  G T   ++   G+  +A IL
Sbjct: 109 QDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 51.2 bits (124), Expect = 5e-08
 Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 52/165 (31%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
               L  AA       ++             L+        ++  G TPL++A   G L+
Sbjct: 14  LGKKLLEAA---RAGQDDEVR---------ILMANGADVNAKDEYGLTPLYLATAHGHLE 61

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL 126
             ++L+         +  DV       +  G T LH A      A        E      
Sbjct: 62  IVEVLL--------KNGADV----NAVDAIGFTPLHLA------AFIGH---LE------ 94

Query: 127 DSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169
             +A  L+    D NA    +   K+   +++ + NED+ E + +
Sbjct: 95  --IAEVLLKHGADVNAQ---DKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 48.5 bits (117), Expect = 4e-07
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 12/86 (13%)

Query: 281 ELFNNKGQNI---LHVAAKKGRDVSVTHILE--ASDLTDKLINEMDDDGNTPLHLAALYG 335
              ++ G ++   L  AA+ G+D  V  ++   A       +N  D+ G TPL+LA  +G
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD------VNAKDEYGLTPLYLATAHG 58

Query: 336 HYFVAVILGKDGRAESDIINFYGQTA 361
           H  +  +L K+G A+ + ++  G T 
Sbjct: 59  HLEIVEVLLKNG-ADVNAVDAIGFTP 83

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 34/197 (17%), Positives = 57/197 (28%), Gaps = 74/197 (37%)

Query: 48  QNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNA 107
             S     L  AAR G     +IL+        ++  DV      K+  G T L+ A   
Sbjct: 10  HGSDLGKKLLEAARAGQDDEVRILM--------ANGADV----NAKDEYGLTPLYLA--- 54

Query: 108 LQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILE 165
                       E        +   L+    D NA    +    +PL+LA    + +I E
Sbjct: 55  ---TAHGH---LE--------IVEVLLKNGADVNAV---DAIGFTPLHLAAFIGHLEIAE 97

Query: 166 YILE--ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHW 223
            +L+  A     D +A+                                 D+   T    
Sbjct: 98  VLLKHGA-----DVNAQ---------------------------------DKFGKTAFDI 119

Query: 224 AASVDHLEGVRFLYEIN 240
           +    + +    L ++N
Sbjct: 120 SIGNGNEDLAEILQKLN 136

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 42/313 (13%), Positives = 67/313 (21%), Gaps = 116/313 (37%)

Query: 49  NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA-LNA 107
             +G     +  +DG   +       A         DV            T    A   A
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIA--------ADV-------VSEYETPWWTAARKA 56

Query: 108 --------LQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESK 159
                   L+D   D +   E+G T                           L       
Sbjct: 57  DEQALSQLLEDR--DVDAVDENGRT--------------------------ALLFVAGLG 88

Query: 160 NEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNT 219
           ++  +  + EA        A L+ +          + G                     T
Sbjct: 89  SDKCVRLLAEA-------GADLDHRD--------MRGG--------------------LT 113

Query: 220 PMHWAASVDHLEGVRFLYE----INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKE- 274
            +H AA     E V  L E    I       ++E GL    LA         G  ++   
Sbjct: 114 ALHMAAGYVRPEVVEALVELGADIE-----VEDERGLTALELAREILKTTPKGNPMQFGR 168

Query: 275 NMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALY 334
            +         +    +              + E        I E    G    +L    
Sbjct: 169 RI-------GLEKVINVLEGQVFEY----AEVDE--------IVEKRGKGKDVEYLVRWK 209

Query: 335 GHYFVAVILGKDG 347
                  + G   
Sbjct: 210 DGGDCEWVKGVHV 222

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.5 bits (176), Expect = 4e-14
 Identities = 34/152 (22%), Positives = 51/152 (33%), Gaps = 14/152 (9%)

Query: 219 TPMHWAASVDHLEGVRFLYE-INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
           TP   AA     + +  L E  + D+    +E G       +  G    +   L  E   
Sbjct: 47  TPWWTAARKADEQALSQLLEDRDVDA---VDENGRTALLFVAGLGSDKCV-RLL-AEAGA 101

Query: 278 HPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAALYGH 336
             +      G   LH+AA   R   V  ++E  +D     I   D+ G T L LA     
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-----IEVEDERGLTALELAREILK 156

Query: 337 YFVAVILGKDGR--AESDIINFYGQTAYDIAE 366
                   + GR      +IN      ++ AE
Sbjct: 157 TTPKGNPMQFGRRIGLEKVINVLEGQVFEYAE 188

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 41/298 (13%), Positives = 77/298 (25%), Gaps = 107/298 (35%)

Query: 49  NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALH------ 102
            S+ +TP   AAR    Q    L++           DV    +  +  G TAL       
Sbjct: 42  VSEYETPWWTAARKADEQALSQLLEDR---------DV----DAVDENGRTALLFVAGLG 88

Query: 103 --EALNALQDAKKDKN-KPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESK 159
             + +  L +A  D + +    G+T                           L++A    
Sbjct: 89  SDKCVRLLAEAGADLDHRDMRGGLT--------------------------ALHMAAGYV 122

Query: 160 NEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNT 219
             +++E ++E         A +E                             ++DE+  T
Sbjct: 123 RPEVVEALVEL-------GADIE-----------------------------VEDERGLT 146

Query: 220 PMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHP 279
            +  A  +          +           E +             V  E +EK      
Sbjct: 147 ALELAREILKTTPKGNPMQFGRR----IGLEKVINVLEGQVFEYAEVD-EIVEK------ 195

Query: 280 NELFNNKGQNILHVAAKKGR-DVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGH 336
                 KG+++ ++   K   D      +  ++           D    L  A     
Sbjct: 196 ----RGKGKDVEYLVRWKDGGDCEWVKGVHVAE-----DVA--KDYEDGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 62.2 bits (152), Expect = 5e-11
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 11/98 (11%)

Query: 246 QKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTH 305
           +   EG   + +   +G  P              +    ++ +     AA+K  + +++ 
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYI----AADV--VSEYETPWWTAARKADEQALSQ 63

Query: 306 ILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
           +LE  D     ++ +D++G T L   A  G      +L
Sbjct: 64  LLEDRD-----VDAVDENGRTALLFVAGLGSDKCVRLL 96

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.7 bits (104), Expect = 8e-05
 Identities = 29/259 (11%), Positives = 59/259 (22%), Gaps = 99/259 (38%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSK-GDTPLHVAARDGML 65
           G T L   A       +              L         ++ + G T LH+AA     
Sbjct: 77  GRTALLFVAG---LGSDKCVR---------LLAEAGADLDHRDMRGGLTALHMAAGYVRP 124

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTS 125
           +  + LV+                              A         D     E G+T 
Sbjct: 125 EVVEALVE----------------------------LGA---------DIEVEDERGLT- 146

Query: 126 LDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKS 185
                                     L LA E          ++          ++  + 
Sbjct: 147 -------------------------ALELAREILKTTPKGNPMQF-------GRRIGLE- 173

Query: 186 PVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVL 245
                 ++  +   ++    +   ++ +  +     +     D  +          + V 
Sbjct: 174 ------KVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVA 227

Query: 246 QKNEEGLYPFHLASANGCV 264
           +  E+GL     A A   +
Sbjct: 228 KDYEDGL---EYAVAESVI 243

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 68.6 bits (169), Expect = 5e-14
 Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 34/142 (23%)

Query: 219 TPMHWAASVDHLEGVRFL--YEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL----- 271
           T +H A+    +  V +L     +P+    K+  G  P H A  +G + V+ E L     
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVV-ELLLQHKA 67

Query: 272 ---EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL---EASDLTDKLINEMDDDGN 325
                            +  + LH AAK G  V +  +L    AS       N ++  G 
Sbjct: 68  LVNTT----------GYQNDSPLHDAAKNGH-VDIVKLLLSYGAS------RNAVNIFGL 110

Query: 326 TPLHLAALYGHYFVAVILGKDG 347
            P+          + ++  K+ 
Sbjct: 111 RPVDYTDDESMKSLLLLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 65.1 bits (160), Expect = 6e-13
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 247 KNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHI 306
            N  G    H+AS  G +P +   L+      PN   ++ G   LH A   G    V  +
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNG--SDPNVK-DHAGWTPLHEACNHGHLKVVELL 62

Query: 307 LE--ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDI 364
           L+  A       +N      ++PLH AA  GH  +  +L   G A  + +N +G    D 
Sbjct: 63  LQHKAL------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDY 115

Query: 365 AEQQ 368
            + +
Sbjct: 116 TDDE 119

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 56.3 bits (137), Expect = 8e-10
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 33/139 (23%)

Query: 49  NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNA- 107
           N +G+T LH+A+  G + + + L+         +  D      +K+  G T LHEA N  
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLL--------QNGSDP----NVKDHAGWTPLHEACNHG 54

Query: 108 -------LQDAKKDKNKPKEDGVTSL--------DSLARSLVSE--DPNASYLMNVDCKS 150
                  L   K   N       + L          + + L+S     NA    N+    
Sbjct: 55  HLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV---NIFGLR 111

Query: 151 PLYLAVESKNEDILEYILE 169
           P+    +   + +L    +
Sbjct: 112 PVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 32/183 (17%), Positives = 52/183 (28%), Gaps = 60/183 (32%)

Query: 93  KNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKS 150
            N RG T LH A      + K            +      L+    DPN     +    +
Sbjct: 6   TNHRGETLLHIA------SIKG----------DIP-SVEYLLQNGSDPNVK---DHAGWT 45

Query: 151 PLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALL 210
           PL+ A    +  ++E +L+         A +                             
Sbjct: 46  PLHEACNHGHLKVVELLLQH-------KALVNTT-------------------------- 72

Query: 211 LIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEF 270
                Q ++P+H AA   H++ V+ L           N  GL P           ++   
Sbjct: 73  ---GYQNDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLL-LL 127

Query: 271 LEK 273
            EK
Sbjct: 128 PEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.8 bits (102), Expect = 4e-05
 Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 30/98 (30%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITM------QNSKGDTPLHVAARDGMLQ 66
           G T LH A       H  +            L+           + D+PLH AA++G + 
Sbjct: 43  GWTPLHEAC---NHGHLKVVE---------LLLQHKALVNTTGYQNDSPLHDAAKNGHVD 90

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
             K+L+        S            N+ G   +   
Sbjct: 91  IVKLLL--------SYGASR----NAVNIFGLRPVDYT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 18/65 (27%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLI------TMQNSKGDTPLHVAARDGMLQ 66
            ++ LH AA      H ++        K   L+         N  G  P+     + M  
Sbjct: 76  NDSPLHDAA---KNGHVDIV-------KL--LLSYGASRNAVNIFGLRPVDYTDDESMKS 123

Query: 67  TAKIL 71
              + 
Sbjct: 124 LLLLP 128

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 71.0 bits (174), Expect = 7e-14
 Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 25/168 (14%)

Query: 13  GNTLLHIAAAGSIRNHENMAMA-----------TTLARKYPFLITMQNSKGDTPLHVAAR 61
           G T LHIA     R  ++                      P         G+ PL +AA 
Sbjct: 93  GQTALHIAI---ERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC 149

Query: 62  DGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKED 121
                    L +         Q D+      ++ RGNT LH  +    + +++     + 
Sbjct: 150 TNQPHIVHYLTEN-----GHKQADL----RRQDSRGNTVLHALVAIADNTRENTKFVTKM 200

Query: 122 GVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169
               L   A+  +  D N   L+N D  SPL +A ++    I ++I+ 
Sbjct: 201 YDLLLIKCAK--LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 29/188 (15%), Positives = 51/188 (27%), Gaps = 42/188 (22%)

Query: 218 NTPMHWAA---SVDHLEGVRFLYEINPDS----------VLQKNEEGLYPFHLASANGCV 264
            T +  A    S    + +  L +I   +                 G    H+A    C 
Sbjct: 47  KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCK 106

Query: 265 PVMGEFL--------EKEN----MPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDL 312
             + E L         +       P     +   G+  L +AA   +   + H L  +  
Sbjct: 107 HYV-ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ-PHIVHYLTENGH 164

Query: 313 TDKLINEMDDDGNTPLHLAALYGHYF----------VAVILGKDGR-----AESDIINFY 357
               +   D  GNT LH                     ++L K  +         ++N  
Sbjct: 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND 224

Query: 358 GQTAYDIA 365
           G +   +A
Sbjct: 225 GLSPLMMA 232

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 64.8 bits (158), Expect = 8e-12
 Identities = 38/233 (16%), Positives = 66/233 (28%), Gaps = 46/233 (19%)

Query: 149 KSPLYLAVESKNEDILEYILEAL-----PVND-DCDAKLEGKSPVKVAIELQKLG----- 197
           +  L+  V   + D LE +L  L      + D +      GK+ +  A+     G     
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65

Query: 198 --LLKMMHDKQPALLLIQDEQMN------TPMHWAASVDHLEGVRFLYE----IN----- 240
             LL +          I     +      T +H A        V  L E    ++     
Sbjct: 66  PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG 125

Query: 241 ----PDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP-HPNELFNNKGQNILHVAA 295
               P         G  P  LA+      ++    E  +         +++G  +LH   
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ-DSRGNTVLHALV 184

Query: 296 KKGRDVSVTHILEAS------------DLTDKLINEMDDDGNTPLHLAALYGH 336
               +                           L   +++DG +PL +AA  G 
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 55/302 (18%), Positives = 91/302 (30%), Gaps = 101/302 (33%)

Query: 14  NTLLHIAAAGSIRNHENMAMATTLARKYPFLI----------TMQNSKGDTPLHVAA--- 60
             L  I + GS    E +           FL+            + S G T L  A    
Sbjct: 7   PILFDIVSRGSPDGLEGLL---------SFLLTHKKRLTDEEFREPSTGKTCLPKALLNL 57

Query: 61  RDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKE 120
             G   T  IL+D A++  +  +  +         RG TALH A+         + + K 
Sbjct: 58  SAGRNDTIPILLDIAEKTGNMREF-INSPFRDVYYRGQTALHIAI---------ERRCKH 107

Query: 121 DGVTSLDSLARSLVSE--DPNA-----------SYLMNVDCKSPLYLAVESKNEDILEYI 167
                       LV +  D +A                   + PL LA  +    I+ Y+
Sbjct: 108 --------YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

Query: 168 LEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASV 227
            E                                 +  + A L  QD + NT +H   ++
Sbjct: 160 TE---------------------------------NGHKQADLRRQDSRGNTVLHALVAI 186

Query: 228 DH---------LEGVRFLYE----INPDSVLQ--KNEEGLYPFHLASANGCVPVMGEFLE 272
                       +    L      + PD+ L+   N +GL P  +A+  G + +    + 
Sbjct: 187 ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

Query: 273 KE 274
           +E
Sbjct: 247 RE 248

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 15/105 (14%)

Query: 254 PFHLASANGCVPVMGEFLE-----KENMPHPNELFNNKGQNILHVAA---KKGRDVSVTH 305
                 + G    +   L      K+ +        + G+  L  A      GR+ ++  
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 306 ILEASDLTDKL-------INEMDDDGNTPLHLAALYGHYFVAVIL 343
           +L+ ++ T  +         ++   G T LH+A          +L
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELL 112

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 69.3 bits (170), Expect = 8e-14
 Identities = 19/173 (10%), Positives = 44/173 (25%), Gaps = 23/173 (13%)

Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQ--KNEEGLYPFHLASANGCVPVMGEFLEKENM 276
             +  AA +   E    L+E   +      K+          +      +   FL  +  
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKIS-MFLINKGA 66

Query: 277 PHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLI------NEMDDDGNTPLHL 330
                    +G  +     + G       I   ++L    +        +       +  
Sbjct: 67  D-IKSR-TKEGTTLFFPLFQGGG----NDITGTTELCKIFLEKGADITALYKPYKIVVFK 120

Query: 331 AALYGHY-------FVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF 376
                            +I  + G  +  I + +G TA +  ++    I  + 
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSG-LQLLIKDKWGLTALEFVKRCQKPIALKM 172

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 19/202 (9%), Positives = 43/202 (21%), Gaps = 44/202 (21%)

Query: 150 SPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPAL 209
             +  A      +    + E      + D +   KS +                      
Sbjct: 8   RTVSAAAMLGTYEDFLELFEK---GYE-DKESVLKSNI---------------------- 41

Query: 210 LLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMG- 268
                  +   +         +   FL     D +  + +EG   F      G   + G 
Sbjct: 42  -------LYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPLFQGGGNDITGT 93

Query: 269 ----EFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKL---INEMD 321
               +   ++       L     + ++              I     +  +    +   D
Sbjct: 94  TELCKIFLEKGA-DITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD 151

Query: 322 DDGNTPLHLAALYGHYFVAVIL 343
             G T L             ++
Sbjct: 152 KWGLTALEFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 17/98 (17%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLI------TMQNSKGDTPLHVAARDGMLQ 66
           G TL             ++   T L +     +      T         +     +  + 
Sbjct: 75  GTTLFFPLFQ---GGGNDITGTTELCK---IFLEKGADITALYKPYKIVVFKNIFNYFVD 128

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
             + ++   K + S S + +     +K+  G TAL   
Sbjct: 129 ENE-MIPLYKLIFSQSGLQL----LIKDKWGLTALEFV 161

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 16/174 (9%), Positives = 38/174 (21%), Gaps = 51/174 (29%)

Query: 13  GNTLLHIAAA-GSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGML 65
            + +L+      +      ++M         FLI        +  +G T      + G  
Sbjct: 38  KSNILYDVLRNNNDEARYKISM---------FLINKGADIKSRTKEGTTLFFPLFQGGGN 88

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLME------MKNVRGNTALHEALNALQDAKKDKNKPK 119
                   C            K  +E               + +                
Sbjct: 89  DITGTTELC------------KIFLEKGADITALYKPYKIVVFKN------IFNYFVDEN 130

Query: 120 EDGVTSLDSLARSLVSE---DPNASYLMNVDCKSPLYLAVESKNEDILEYILEA 170
           E     +  L + + S+           +    + L      +    L+ + + 
Sbjct: 131 E-----MIPLYKLIFSQSGLQLLIK---DKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 7/63 (11%), Positives = 21/63 (33%), Gaps = 1/63 (1%)

Query: 12  SGNTLLHIAAA-GSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKI 70
               ++        +  +E + +   +  +    + +++  G T L    R       K+
Sbjct: 113 PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKM 172

Query: 71  LVD 73
           + D
Sbjct: 173 MED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 27/196 (13%), Positives = 62/196 (31%), Gaps = 43/196 (21%)

Query: 54  TPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEAL-NALQDAK 112
             +  AA  G  +    L +           + K     ++V  +  L++ L N   +A+
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKG--------YEDK-----ESVLKSNILYDVLRNNNDEAR 54

Query: 113 KDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEY--IL 168
                           ++  L+++  D  +      +  +  +   +    DI     + 
Sbjct: 55  YK--------------ISMFLINKGADIKS---RTKEGTTLFFPLFQGGGNDITGTTELC 97

Query: 169 EALPVND-DCDAK-LEGKSPVKVAI------ELQKLGLLKMMHDKQPALLLIQDEQMNTP 220
           +       D  A     K  V   I      E + + L K++  +    LLI+D+   T 
Sbjct: 98  KIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA 157

Query: 221 MHWAASVDHLEGVRFL 236
           + +         ++ +
Sbjct: 158 LEFVKRCQKPIALKMM 173

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 69.2 bits (169), Expect = 9e-13
 Identities = 39/306 (12%), Positives = 85/306 (27%), Gaps = 78/306 (25%)

Query: 97  GNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAV 156
           G ++  + L  L  + +     + +                                LA 
Sbjct: 103 GCSSALDTLCLLLTSDEIVKVIQAENYQ--------------------------AFRLAA 136

Query: 157 ESKNEDILEYILEALPVNDDCDAKLEGKSPVKVA-----IELQKLGLLKMMHDKQPALLL 211
           E+ +  +L  + E  P       + E     ++A     + +    L ++   +  A++ 
Sbjct: 137 ENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNR-LCELAPTEATAMIQ 195

Query: 212 IQDEQMNTPMHWAASV-DHLEGVRFLYEINPD---------------------SVLQKNE 249
            ++        WAA    H   + FL +                           + + +
Sbjct: 196 AEN---YYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLK 252

Query: 250 EGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRD--VSVTHIL 307
           E    F L++ +G   +    + K            +G  +L    ++  +  +     L
Sbjct: 253 EMHDAFKLSNPDGVFDL----VTKSE--------CLQGFYMLRNLIRRNDEVLLDDIRFL 300

Query: 308 EASDLTDKL--INEMDDDGNTPLHLAALYGHYFVAVIL--GKDGRAESDIINFY---GQT 360
            +      L     +  D N  L LA   G+     +L       A +   N+Y      
Sbjct: 301 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGG 360

Query: 361 AYDIAE 366
             D+  
Sbjct: 361 RLDLRA 366

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 39/310 (12%), Positives = 87/310 (28%), Gaps = 74/310 (23%)

Query: 45  ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
           + +  ++      +AA +G L     L +       +    +     M       A   A
Sbjct: 121 VKVIQAENYQAFRLAAENGHLHVLNRLCEL------APTEIMA----MIQAENYHAFRLA 170

Query: 105 LNALQDAKKDKNKPKEDG----VTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKN 160
                 A+         G    +  L  LA +  +    A      +  +  + AV   +
Sbjct: 171 ------AEN--------GHLHVLNRLCELAPTEATAMIQAE-----NYYAFRWAAVGRGH 211

Query: 161 EDILEYILE--ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMN 218
            +++ ++L+   +    +      G+  V   I      L                ++M+
Sbjct: 212 HNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL----------------KEMH 255

Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
                +      + V             +  +G Y            ++ +     ++P 
Sbjct: 256 DAFKLSNPDGVFDLVTK----------SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPG 305

Query: 279 PNELFN-----NKGQNILHVAAKKGRD------VSVTHILEASDLTDKLINEMDDDGNTP 327
              L            +L +A + G        +S+  +L  +   +  IN  +  G   
Sbjct: 306 IKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYIN--ETGGRLD 363

Query: 328 LHLAALYGHY 337
           L   AL  H+
Sbjct: 364 LRAVALEHHH 373

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 26/165 (15%)

Query: 219 TPMHWAASVDHLEGVRFLYE--INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENM 276
             +  AA    LE V+   +   +P    Q NEEG+   H A       ++ +FL    +
Sbjct: 23  VLLLDAALTGELEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSIV-DFL----I 74

Query: 277 PH---PNELFNNKGQNILHVAAKKGRDVSVTHILE--ASDLTDKLINEMDD-DGNTPLHL 330
                 N   ++ G   LH AA     V    +++  A+      I      DG T    
Sbjct: 75  TAGANVNSP-DSHGWTPLHCAASCNDTVICMALVQHGAA------IFATTLSDGATAFEK 127

Query: 331 AALY--GHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKII 373
              Y  G+   A  L         ++N     A      ++   +
Sbjct: 128 CDPYREGYADCATYLADVE-QSMGLMNSGAVYALWDYSAEFGDEL 171

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 35/236 (14%), Positives = 66/236 (27%), Gaps = 63/236 (26%)

Query: 115 KNKPKEDGVTSLDS--------LARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDIL 164
             + + + +  L          + +  V E  DP+     N +  + L+ A+   N  I+
Sbjct: 14  ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP---NEEGITALHNAICGANYSIV 70

Query: 165 EYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWA 224
           ++++ A        A +                                D    TP+H A
Sbjct: 71  DFLITA-------GANVNSP-----------------------------DSHGWTPLHCA 94

Query: 225 ASVDHLEGVRFLYEINPDSVLQKN-EEGLYPFHLASA--NGCVPVMGEFLEK-ENMPHPN 280
           AS +       L +     +      +G   F        G         +  ++M   N
Sbjct: 95  ASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN 153

Query: 281 ELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGH 336
               +     L   + +  D       E   +T   +   D    T    AAL+G 
Sbjct: 154 ----SGAVYALWDYSAEFGDE--LSFREGESVT---VLRRDGPEETDWWWAALHGQ 200

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 21/153 (13%), Positives = 42/153 (27%), Gaps = 19/153 (12%)

Query: 219 TPMHWAASVDHLEGVRFLYE----INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKE 274
           T +H A    +   V FL      +N       +  G  P H A++     +    L  +
Sbjct: 56  TALHNAICGANYSIVDFLITAGANVN-----SPDSHGWTPLHCAASCNDTVIC-MAL-VQ 108

Query: 275 NMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDK--LINEMDDDGNTPLHLAA 332
           +         + G                 +   A+ L D    +  M+      L   +
Sbjct: 109 HGAAIFATTLSDGATAFEKCDPYRE----GYADCATYLADVEQSMGLMNSGAVYALWDYS 164

Query: 333 LYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
                 ++   G+         +   +T +  A
Sbjct: 165 AEFGDELSFREGES--VTVLRRDGPEETDWWWA 195

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 35/236 (14%), Positives = 56/236 (23%), Gaps = 57/236 (24%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGML 65
           +   LL  AA         +             +         N +G T LH A      
Sbjct: 20  NPLVLLLDAAL---TGELEVVQ---------QAVKEMNDPSQPNEEGITALHNAICGANY 67

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTS 125
                L+        ++  +V       +  G T LH A      A  +           
Sbjct: 68  SIVDFLI--------TAGANV----NSPDSHGWTPLHCA------ASCN----------D 99

Query: 126 LDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKN--EDILEYILEALPVNDDCDAKL 181
              +  +LV       A+     D  +        +    D   Y+ +   V        
Sbjct: 100 TV-ICMALVQHGAAIFAT--TLSDGATAFEKCDPYREGYADCATYLAD---VEQSMGLMN 153

Query: 182 EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY 237
            G          +    L      +   +L +D    T   WAA       V   Y
Sbjct: 154 SGAVYALWDYSAEFGDELSFREG-ESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 287 GQNILHVAAKKGRDVSVTHILEASDLTDKL--INEMDDDGNTPLHLAALYGHYFVAVILG 344
              +L  AA  G       +        ++   ++ +++G T LH A    +Y +   L 
Sbjct: 21  PLVLLLDAALTG------ELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLI 74

Query: 345 KDGRAESDIINFYGQTA 361
             G A  +  + +G T 
Sbjct: 75  TAG-ANVNSPDSHGWTP 90

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 3e-12
 Identities = 70/464 (15%), Positives = 136/464 (29%), Gaps = 155/464 (33%)

Query: 31  MAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLM 90
             +   L   Y FL+        +P+    R   + T ++ ++   R+ + +Q+  K+  
Sbjct: 81  KFVEEVLRINYKFLM--------SPIKTEQRQPSMMT-RMYIEQRDRLYNDNQVFAKY-- 129

Query: 91  EMKNV-RGN--TALHEALNALQDAKKDKNKPKEDGVTSLD--------SLARSLVSED-- 137
              NV R      L +AL  L+ AK          V  +D         +A  +      
Sbjct: 130 ---NVSRLQPYLKLRQALLELRPAK---------NVL-IDGVLGSGKTWVALDVCLSYKV 176

Query: 138 ----PNASYLMNV-DCKSPLYLAVESKNEDILEYILEALPVNDDCD--AKLEGKSPVKVA 190
                   + +N+ +C SP         E +LE +L+ L    D +  ++ +  S +K+ 
Sbjct: 177 QCKMDFKIFWLNLKNCNSP---------ETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 191 IELQKLGLLKMMHDKQ-PALLLIQDEQMNTPMHWAA--------------SV-DHLEGVR 234
           I   +  L +++  K     LL+    +     W A               V D L    
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 235 F--LYEINPDSVLQKNE-EGLY-------------------PFHLASANGCVPVMGEFLE 272
              +   +    L  +E + L                    P  L+       ++ E + 
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-------IIAESIR 338

Query: 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
                           N  HV   K     +T I+E+S      +N ++           
Sbjct: 339 D----GLATW-----DNWKHVNCDK-----LTTIIESS------LNVLEPA--------- 369

Query: 333 LYGHYFVA-VILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSEND-DDMMTLLVLL 390
            Y   F    +                     I     + I  +  ++D   ++  L   
Sbjct: 370 EYRKMFDRLSVFPPS---------------AHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 391 IVYIRDQLFQPGRTSFGNLLKLIDNLGRTSNATPVNQKAMKDRI 434
            +  +    +    S       I ++         N+ A+   I
Sbjct: 415 SLVEKQP--KESTIS-------IPSIYLELKVKLENEYALHRSI 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 2e-09
 Identities = 73/513 (14%), Positives = 154/513 (30%), Gaps = 132/513 (25%)

Query: 159 KNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMN 218
           + +DIL    +A   N DC    +    +    E+    ++         L L       
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH--IIMSKDAVSGTLRLF------ 68

Query: 219 TPMHWAASVDHLEGV-RFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
               W       E V +F+     + VL+ N    Y F          +M     ++  P
Sbjct: 69  ----WTLLSKQEEMVQKFV-----EEVLRIN----YKF----------LMSPIKTEQRQP 105

Query: 278 HPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLH-------- 329
                   + ++ L+   +     +V+ +     L   L+ E+    N  +         
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDGVLGSGKT 164

Query: 330 -LAALYGHYFVAVILGKDGRAESDI--INFYGQ--TAYDIAEQQ---YAKIIPEFSENDD 381
            +A       V +      + +  I  +N      +   + E       +I P ++   D
Sbjct: 165 WVALD-----VCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 382 DMMTL---LVLLIVYIRDQLFQPGRTSFGNLLKLIDNLGRTSNATPVNQKAMKDRI---- 434
               +   +  +   +R  L       + N L ++ N+    NA   N   +  +I    
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSK---PYENCLLVLLNV---QNAKAWNAFNLSCKILLTT 272

Query: 435 NNLLVVAALIAGASFAASV-QMSSSHSESQTNTTASIIIRGAGAAPFALP---CSNGH-- 488
               V   L A  +   S+   S + +  +     S++++     P  LP    +  +  
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDE---VKSLLLKYLDCRPQDLPREVLT-TNPR 328

Query: 489 --GGCDESQKKQR-TW-----IKVFTVSNTIAMYTSITAAVLLCSLQLLNTKLASLEFSF 540
                 ES +    TW     +    ++  I             SL +L       E+  
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-----------SLNVLEPA----EYR- 372

Query: 541 ASLSTVIALYTSCIAFYASIHMSTYT---------GREFIVVMAAIQGWILLFRLPRFIF 591
                   ++     F  S H+ T             + +VV+  +  + L+ + P    
Sbjct: 373 -------KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP---- 421

Query: 592 PFQGEKRYILFVYAFRLASLYFLNRIRISQKKT 624
                K   + +      S+Y   ++++  +  
Sbjct: 422 -----KESTISIP-----SIYLELKVKLENEYA 444

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 62/420 (14%), Positives = 132/420 (31%), Gaps = 99/420 (23%)

Query: 1   MSETFKTITSPSGNTLLHIAAAGSIRNHENMAMATTL--ARKYP--FLI--TMQNSKGDT 54
           M +       P+  +    ++   +R H   A    L  ++ Y    L+   +QN+K   
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK--- 257

Query: 55  PLHVAARDGMLQTAKILV---DCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDA 111
                A +    + KIL+      K++T          + + +        E  + L   
Sbjct: 258 --AWNAFNL---SCKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--L 308

Query: 112 K----KDKNKPKEDGVTSLDSLARSLVSE----DPN-ASYLMNVDCK------------- 149
           K    + ++ P+E  V + +    S+++E             +V+C              
Sbjct: 309 KYLDCRPQDLPRE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 150 SP-----LY--LAVESKNEDILEYILEAL---PVNDDCD---AKLEGKSPVKVAIELQKL 196
            P     ++  L+V   +  I   +L  +    +  D      KL   S     +E Q  
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS----LVEKQPK 422

Query: 197 GLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFH 256
                +      L +  + +    +H  + VDH          + D ++    +  +  H
Sbjct: 423 ESTISIPSIYLELKVKLENE--YALH-RSIVDH---YNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 257 LASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKL 316
           +          G  L+    P    LF     +   +  K      + H   A + +  +
Sbjct: 477 I----------GHHLKNIEHPERMTLFRMVFLDFRFLEQK------IRHDSTAWNASGSI 520

Query: 317 INEMDDDGNTPLHLAALYGHYFVAVILGKDGRAE---SDIINFYGQTAYDIAEQQYAKII 373
           +N +             Y  Y    I   D + E   + I++F  +   ++   +Y  ++
Sbjct: 521 LNTLQQ--------LKFYKPY----ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 61.2 bits (150), Expect = 1e-11
 Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 42/150 (28%)

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271
              +  NTP+H AA   H E V+ L     D V  ++++G  P HLA+ NG   ++    
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIV---- 58

Query: 272 EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLA 331
                    +L   KG +                           +N    DGNTP HLA
Sbjct: 59  ---------KLLLAKGAD---------------------------VNARSKDGNTPEHLA 82

Query: 332 ALYGHYFVAVILGKDGRAESDIINFYGQTA 361
              GH+ +  +L   G A+ +  ++     
Sbjct: 83  KKNGHHEIVKLLDAKG-ADVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 48.5 bits (117), Expect = 3e-07
 Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 38/128 (29%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
           GNT LH AA      H           K   L++       ++  G+TPLH+AA++G  +
Sbjct: 9   GNTPLHNAA---KNGHAEEV-------KK--LLSKGADVNARSKDGNTPLHLAAKNGHAE 56

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA--------LNALQDAKKDKNKP 118
             K+L+        +   DV      ++  GNT  H A        +  L     D N  
Sbjct: 57  IVKLLL--------AKGADV----NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104

Query: 119 KEDGVTSL 126
                   
Sbjct: 105 SWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 30/96 (31%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
           GNT LH+AA      H  +        K   L+        ++  G+TP H+A ++G  +
Sbjct: 42  GNTPLHLAA---KNGHAEIV-------KL--LLAKGADVNARSKDGNTPEHLAKKNGHHE 89

Query: 67  TAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALH 102
             K+L         +   DV      ++   +   H
Sbjct: 90  IVKLLD--------AKGADV----NARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 43.1 bits (103), Expect = 2e-05
 Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 35/126 (27%)

Query: 47  MQNSK-GDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEAL 105
           M  SK G+TPLH AA++G  +  K L+        S   DV      ++  GNT LH A 
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLL--------SKGADV----NARSKDGNTPLHLA- 49

Query: 106 NALQDAKKDKNKPKEDGVTSLDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDI 163
                AK       E        + + L+++  D NA    + D  +P +LA ++ + +I
Sbjct: 50  -----AKNGH---AE--------IVKLLLAKGADVNAR---SKDGNTPEHLAKKNGHHEI 90

Query: 164 LEYILE 169
           ++ +  
Sbjct: 91  VKLLDA 96

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 56.2 bits (137), Expect = 3e-10
 Identities = 37/119 (31%), Positives = 48/119 (40%), Gaps = 41/119 (34%)

Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
            TP+H AA   HLE V+ L E   D V  K++ G  P HLA+ NG + V+ + L      
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVV-KLL------ 54

Query: 278 HPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGH 336
                             + G D                +N  D +G TPLHLAA  GH
Sbjct: 55  -----------------LEAGAD----------------VNAKDKNGRTPLHLAARNGH 80

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 47.3 bits (114), Expect = 4e-07
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 11/74 (14%)

Query: 291 LHVAAKKGRDVSVTHIL---EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347
           LH+AA+ G  + V  +L    A       +N  D +G TPLHLAA  GH  V  +L + G
Sbjct: 6   LHLAARNGH-LEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 348 RAESDIINFYGQTA 361
            A+ +  +  G+T 
Sbjct: 59  -ADVNAKDKNGRTP 71

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 46.6 bits (112), Expect = 7e-07
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 30/99 (30%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGML 65
           +G T LH+AA      H  +        K   L+        ++  G TPLH+AAR+G L
Sbjct: 1   NGRTPLHLAAR---NGHLEVV-------KL--LLEAGADVNAKDKNGRTPLHLAARNGHL 48

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
           +  K+L+         +  DV      K+  G T LH A
Sbjct: 49  EVVKLLL--------EAGADV----NAKDKNGRTPLHLA 75

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 41.2 bits (98), Expect = 6e-05
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPV 266
           +D+   TP+H AA   HLE V+ L E   D V  K++ G  P HLA+ NG + V
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEV 83

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.0 bits (95), Expect = 1e-04
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 18/67 (26%)

Query: 13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITM------QNSKGDTPLHVAARDGMLQ 66
          G T LH+AA      H  +        K   L+        ++  G TPLH+AAR+G L+
Sbjct: 35 GRTPLHLAAR---NGHLEVV-------KL--LLEAGADVNAKDKNGRTPLHLAARNGHLE 82

Query: 67 TAKILVD 73
            K+L++
Sbjct: 83 VVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.0 bits (95), Expect = 2e-04
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 46/127 (36%)

Query: 52  GDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA------- 104
           G TPLH+AAR+G L+  K+L+         +  DV      K+  G T LH A       
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL--------EAGADV----NAKDKNGRTPLHLAARNGHLE 49

Query: 105 -LNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDI 163
            +  L +A  D N   ++G T                          PL+LA  + + ++
Sbjct: 50  VVKLLLEAGADVNAKDKNGRT--------------------------PLHLAARNGHLEV 83

Query: 164 LEYILEA 170
           ++ +LEA
Sbjct: 84  VKLLLEA 90

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 59.2 bits (143), Expect = 7e-10
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 2/101 (1%)

Query: 275 NMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALY 334
               P    +   +  LH+A +   D +  HI++        +++    G+T LH   L 
Sbjct: 157 TEKIPLANGHEPDETALHLAVRSV-DRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215

Query: 335 GHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPE 375
            +     +L +   A  +I N  G+T  DIA++   +   E
Sbjct: 216 DNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEE 255

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 8/98 (8%)

Query: 248 NEEGLYPFHLA--SANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTH 305
           +E      HLA  S +     + +FL  +N  + ++    KG   LH          +  
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLV-QNSGNLDKQ-TGKGSTALHYCCLTDNAECLKL 223

Query: 306 ILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
           +L         I   ++ G TPL +A    H     +L
Sbjct: 224 LLRGK----ASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 15/96 (15%)

Query: 9   TSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTA 68
                 T LH+A     R   ++        +    +  Q  KG T LH        +  
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHI---VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL 221

Query: 69  KILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
           K+L+   +          K  +E+ N  G T L  A
Sbjct: 222 KLLL---RG---------KASIEIANESGETPLDIA 245

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 275 NMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALY 334
             P P        + +LH+A K     S+  +++        ++    DGNT LH AALY
Sbjct: 178 GQPLPGPDAQAPEELVLHLAVKVANQASL-PLVDFIIQNGGHLDAKAADGNTALHYAALY 236

Query: 335 GHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPE 375
                  +L K   A    +N  G+TA DIA +++ K   E
Sbjct: 237 NQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEE 276

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 284 NNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAALYGHYFVAVI 342
            +     L  AA+ G+D  V  ++   +D     +   D +G+TPLHLAA  GH  V  +
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGAD-----VAAKDKNGSTPLHLAARNGHLEVVKL 75

Query: 343 LGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF 376
           L + G A+    + +G+TA+DI+     + + E 
Sbjct: 76  LLEAG-ADVXAQDKFGKTAFDISIDNGNEDLAEI 108

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 46.8 bits (112), Expect = 9e-07
 Identities = 25/129 (19%), Positives = 39/129 (30%), Gaps = 29/129 (22%)

Query: 224 AASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL--------EKEN 275
            +S  H      L             +       A+  G    +   L         K  
Sbjct: 1   GSSHHHHHHSSGLVPRGSH----MGSDLGKKLLEAARAGQDDEV-RILMANGADVAAK-- 53

Query: 276 MPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAALY 334
                   +  G   LH+AA+ G    V  +LEA +D     +   D  G T   ++   
Sbjct: 54  --------DKNGSTPLHLAARNGHLEVVKLLLEAGAD-----VXAQDKFGKTAFDISIDN 100

Query: 335 GHYFVAVIL 343
           G+  +A IL
Sbjct: 101 GNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 12/56 (21%)

Query: 49  NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
            S     L  AAR G     +IL+        ++  DV      K+  G+T LH A
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILM--------ANGADV----AAKDKNGSTPLHLA 64

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 41.0 bits (97), Expect = 9e-05
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVM 267
           +D+  +TP+H AA   HLE V+ L E   D V  +++ G   F ++  NG   + 
Sbjct: 53  KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLA 106

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 18/67 (26%)

Query: 13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLIT------MQNSKGDTPLHVAARDGMLQ 66
              L  AA       ++         +   L+        ++  G TPLH+AAR+G L+
Sbjct: 24 LGKKLLEAAR---AGQDDEV-------RI--LMANGADVAAKDKNGSTPLHLAARNGHLE 71

Query: 67 TAKILVD 73
            K+L++
Sbjct: 72 VVKLLLE 78

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 12/112 (10%)

Query: 275 NMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-----SDLTDKLINEMDDDGNTPLH 329
             P P        + +LH+A K     S+  +++        L     +    DGNT LH
Sbjct: 159 GQPLPGPDAQAPEELVLHLAVKVANQASL-PLVDFIIQNGGHL-----DAKAADGNTALH 212

Query: 330 LAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSENDD 381
            AALY       +L K GRA    +N  G+TA DIA +++ K   E  E   
Sbjct: 213 YAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQAQ 263

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 12/121 (9%)

Query: 251 GLYPFHLASANGCVPVMGEFL---EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL 307
           G   F  +     +P M + L      N  +  +         L  A             
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQ----DNATPLIQATAANS----LLAC 251

Query: 308 EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQ 367
           E        +N+ D  G  PLH A + GH  +A +  K G A+    +  G+    IA +
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAME 310

Query: 368 Q 368
            
Sbjct: 311 T 311

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	626
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.92
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.92
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.92
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.87
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.87
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.86
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.86
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.85
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.85
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.83
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.82
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.81
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.81
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.81
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.79
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.77
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.77
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.75
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.74
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.73
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.73
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.73
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.71
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.69
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.6
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.59

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.7e-49  Score=422.41  Aligned_cols=325  Identities=24%  Similarity=0.303  Sum_probs=185.9

Q ss_pred             cccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchh
Q 039828            6 KTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQID   85 (626)
Q Consensus         6 ~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   85 (626)
                      .+..|..|.||||+||..|+   .+  +|++|++++.+ ++.+|..|+||||+||..|+.++|++|++++++++      
T Consensus         7 ~~~~~~~g~t~L~~Aa~~g~---~~--~v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~------   74 (437)
T 1n11_A            7 GGGGGESGLTPLHVASFMGH---LP--IVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN------   74 (437)
T ss_dssp             --------CCHHHHHHHHTC---HH--HHHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS------
T ss_pred             ccccCCCCCCHHHHHHHCCC---HH--HHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC------
Confidence            35677788888888888888   77  88888887765 67778888888888888888888888888877653      


Q ss_pred             hhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHH
Q 039828           86 VKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILE  165 (626)
Q Consensus        86 ~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  165 (626)
                            .++.+|.||||+|+.       .++          .+++++|++++++++ ..+..|.||||+|+..|+.++++
T Consensus        75 ------~~~~~g~t~L~~A~~-------~g~----------~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~  130 (437)
T 1n11_A           75 ------AKAKDDQTPLHCAAR-------IGH----------TNMVKLLLENNANPN-LATTAGHTPLHIAAREGHVETVL  130 (437)
T ss_dssp             ------CCCTTSCCHHHHHHH-------HTC----------HHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             ------CCCCCCCCHHHHHHH-------CCC----------HHHHHHHHhCCCCCC-CCCCCCCcHHHHHHHcCCHHHHH
Confidence                  245555666666655       455          555555555544443 34444445555555555554444


Q ss_pred             HHHHhCCCC-------------------------------CccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccC
Q 039828          166 YILEALPVN-------------------------------DDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQD  214 (626)
Q Consensus       166 ~Ll~~~~~~-------------------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d  214 (626)
                      +|++.+...                               +....+..|.||||.|+..|+.+++++|++.+ ..++..+
T Consensus       131 ~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~  209 (437)
T 1n11_A          131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPA  209 (437)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGT-CCSCCCC
T ss_pred             HHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCcC
Confidence            444443311                               11222333444444444444444444444444 3334444


Q ss_pred             CCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHH
Q 039828          215 EQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVA  294 (626)
Q Consensus       215 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A  294 (626)
                      ..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||.|+..|+.+++++|++++.+++   ..+..|+||||+|
T Consensus       210 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---~~~~~g~t~L~~A  285 (437)
T 1n11_A          210 WNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN---LGNKSGLTPLHLV  285 (437)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT---CCCTTCCCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC---CCCCCCCCHHHHH
Confidence            4455555555555555555555555444 44455555555555555555555555555443332   2355566666666


Q ss_pred             HHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccc
Q 039828          295 AKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIP  374 (626)
Q Consensus       295 ~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~  374 (626)
                      +..|+.+++++|++.+    .++|.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++.+++
T Consensus       286 ~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L~~A~~~g~~~iv  360 (437)
T 1n11_A          286 AQEGHVPVADVLIKHG----VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIV  360 (437)
T ss_dssp             HHHTCHHHHHHHHHHT----CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHHhCC----ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHCChHHHH
Confidence            6666666666666665    556666666666666666666666666666666 66666666666666666666555544


Q ss_pred             cc
Q 039828          375 EF  376 (626)
Q Consensus       375 ~~  376 (626)
                      ++
T Consensus       361 ~~  362 (437)
T 1n11_A          361 TL  362 (437)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.9e-49  Score=421.46  Aligned_cols=335  Identities=25%  Similarity=0.307  Sum_probs=294.2

Q ss_pred             cccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccch-
Q 039828            6 KTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQI-   84 (626)
Q Consensus         6 ~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-   84 (626)
                      .+..|..|+||||+||..|+   .+  ++++|++.+.+ ++.+|..|+||||+|+..|+.++|++|+++|++++..... 
T Consensus        40 ~~~~~~~~~t~L~~A~~~g~---~~--~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g  113 (437)
T 1n11_A           40 PNVSNVKVETPLHMAARAGH---TE--VAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG  113 (437)
T ss_dssp             SCCSSSCCCCHHHHHHHHTC---HH--HHHHHHHHTCC-SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTC
T ss_pred             CCCCCCCCCCHHHHHHHcCC---HH--HHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCC
Confidence            35678889999999999999   88  99999998876 8889999999999999999999999999998876421110 


Q ss_pred             --------------hhhHHH------HhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCccccc
Q 039828           85 --------------DVKFLM------EMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLM  144 (626)
Q Consensus        85 --------------~~~~~l------~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~  144 (626)
                                    -.+.++      +..+..|.||||+|+.       .++          .+++++|++++.+++ ..
T Consensus       114 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-------~g~----------~~~v~~Ll~~g~~~~-~~  175 (437)
T 1n11_A          114 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAK-------YGK----------VRVAELLLERDAHPN-AA  175 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CC
T ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHH-------cCC----------HHHHHHHHhCCCCCC-CC
Confidence                          011111      2235566777777777       777          899999999999887 77


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHH
Q 039828          145 NVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWA  224 (626)
Q Consensus       145 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  224 (626)
                      +..|.||||+|+..|+.+++++|++.+..  ....+..|.||||.|+..|+.++++.|++.+ ..++..+..|.||||+|
T Consensus       176 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A  252 (437)
T 1n11_A          176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGS--PHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLA  252 (437)
T ss_dssp             CSSCCCHHHHHHHTTCHHHHHHHGGGTCC--SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHH
Confidence            88999999999999999999999999874  3445567999999999999999999999998 67888999999999999


Q ss_pred             hhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHH
Q 039828          225 ASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVT  304 (626)
Q Consensus       225 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~  304 (626)
                      +..|+.+++++|++.+++ .+..+..|.||||+|+..|+.+++++|+++|...+   .+|..|+||||+|+.+|+.++++
T Consensus       253 ~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~g~~~~v~  328 (437)
T 1n11_A          253 AQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD---ATTRMGYTPLHVASHYGNIKLVK  328 (437)
T ss_dssp             HHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT---CCCSSCCCHHHHHHHSSCSHHHH
T ss_pred             HHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC---CCCCCCCCHHHHHHHcCcHHHHH
Confidence            999999999999999988 78889999999999999999999999999886554   45889999999999999999999


Q ss_pred             HHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccccc
Q 039828          305 HILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF  376 (626)
Q Consensus       305 ~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~  376 (626)
                      +|++.|    +++|.+|..|+||||+|+..|+.+++++|+++| ++++.+|.+|+||+++|.+.++..++++
T Consensus       329 ~Ll~~g----ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~t~l~~A~~~g~~~~~~~  395 (437)
T 1n11_A          329 FLLQHQ----ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLGYISVTDV  395 (437)
T ss_dssp             HHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHhcC----CCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCcHHHHHH
Confidence            999998    889999999999999999999999999999999 9999999999999999999988766665

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=7.2e-43  Score=360.32  Aligned_cols=296  Identities=16%  Similarity=0.114  Sum_probs=260.0

Q ss_pred             cCCCCcHHHHHHhcCCCccccHHHHHHHHhhCccccccccc-CCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhH
Q 039828           10 SPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNS-KGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKF   88 (626)
Q Consensus        10 ~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~-~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~   88 (626)
                      +.+|+|+||.|+..|+   .+  +|++||++|++ ++.++. .|+||||+||..|+.++|++|+++|+++.         
T Consensus        22 ~~~~~t~L~~Av~~g~---~~--~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~---------   86 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNED---VD--LVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV---------   86 (337)
T ss_dssp             HHHHHHHHHHHHHTTC---HH--HHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------
T ss_pred             CCCCChHHHHHHHcCC---HH--HHHHHHHCCCC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh---------
Confidence            4568999999999999   88  99999999986 777765 59999999999999999999999998763         


Q ss_pred             HHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 039828           89 LMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYIL  168 (626)
Q Consensus        89 ~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  168 (626)
                         .++..+.++++.++.       .+.          ..+...+++.+.+++ ..|..|.||||+|+..|+.+++++|+
T Consensus        87 ---~~~~~~~~~~~~~~~-------~~~----------~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll  145 (337)
T 4g8k_A           87 ---LRKKNGATPFILAAI-------AGS----------VKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLY  145 (337)
T ss_dssp             ---CCCTTCCCHHHHHHH-------HTC----------HHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHH
T ss_pred             ---hhccCCCchhHHHHh-------ccc----------chhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHH
Confidence               478899999999999       888          999999999999987 78999999999999999999999999


Q ss_pred             HhCCCCCcc--------ccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCC----HHHHHHh
Q 039828          169 EALPVNDDC--------DAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDH----LEGVRFL  236 (626)
Q Consensus       169 ~~~~~~~~~--------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~----~~~v~~L  236 (626)
                      +.++..+..        ..+..|.||||.|+..|+.+++++|+++.+.+++.+|..|.|++|.++..+.    .+++++|
T Consensus       146 ~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lL  225 (337)
T 4g8k_A          146 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL  225 (337)
T ss_dssp             HTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHH
T ss_pred             HcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHH
Confidence            988754322        2345689999999999999999999987668899999999999998775433    4688999


Q ss_pred             hhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhh
Q 039828          237 YEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKL  316 (626)
Q Consensus       237 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~  316 (626)
                      ++++++ ++.+|..|.||||+|+..|+.++++.|++.  ....++.+|..|+||||+|+++|+.+++++|+++|    ++
T Consensus       226 l~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~--~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G----Ad  298 (337)
T 4g8k_A          226 LDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQ--EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG----AS  298 (337)
T ss_dssp             HHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTS--TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS----CS
T ss_pred             HHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHh--cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC----CC
Confidence            999998 888999999999999999999999999983  33445667999999999999999999999999998    55


Q ss_pred             cccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccccc
Q 039828          317 INEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDII  354 (626)
Q Consensus       317 in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~  354 (626)
                      +|     +.||||+|++.|+.++|++|+++| +++|..
T Consensus       299 ~n-----~~~~L~~A~~~~~~~iv~~Ll~~G-A~~d~~  330 (337)
T 4g8k_A          299 TD-----CGDLVMTARRNYDHSLVKVLLSHG-AKEDFH  330 (337)
T ss_dssp             ST-----TCCHHHHHHHTTCHHHHHHHHHTT-CCC---
T ss_pred             CC-----CCCHHHHHHHcCCHHHHHHHHHCc-CCCCCC
Confidence            55     456999999999999999999999 998864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.6e-41  Score=351.67  Aligned_cols=303  Identities=21%  Similarity=0.194  Sum_probs=271.8

Q ss_pred             ccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhh
Q 039828            7 TITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDV   86 (626)
Q Consensus         7 ~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   86 (626)
                      ...+..|.|+||.||..|+   .+  .++.++...+..++.+|..|+||||+|+..|+.++|++|+++|+++        
T Consensus        18 ~~~~~~~~~~L~~A~~~g~---~~--~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--------   84 (351)
T 3utm_A           18 VLTGEYKKDELLEAARSGN---EE--KLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV--------   84 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHTC---HH--HHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--------
T ss_pred             eeeccccchhHHHHHHcCC---HH--HHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--------
Confidence            3456778999999999999   88  9999999877778999999999999999999999999999999865        


Q ss_pred             hHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHH
Q 039828           87 KFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEY  166 (626)
Q Consensus        87 ~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  166 (626)
                          +.+|..|.||||+|+.       .++          .+++++|++++.+++ ..|..|.||||+|+..|+.+++++
T Consensus        85 ----~~~~~~g~t~L~~A~~-------~g~----------~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~  142 (351)
T 3utm_A           85 ----HAKDKGGLVPLHNACS-------YGH----------YEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSL  142 (351)
T ss_dssp             ----TCCCTTCCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             ----CccCCCCCcHHHHHHH-------CCC----------HHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHH
Confidence                3478899999999999       999          999999999999987 788999999999999999999999


Q ss_pred             HHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccc
Q 039828          167 ILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQ  246 (626)
Q Consensus       167 Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~  246 (626)
                      |++++..  ....+..|.+|++.|+..+..+.+++....             ++++.++..++.+.++.++..... ...
T Consensus       143 Ll~~g~~--~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~-~~~  206 (351)
T 3utm_A          143 LLSHGAD--PTLVNCHGKSAVDMAPTPELRERLTYEFKG-------------HSLLQAAREADLAKVKKTLALEII-NFK  206 (351)
T ss_dssp             HHHTTCC--TTCCCTTSCCHHHHCSSHHHHHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTCCT-TCC
T ss_pred             HHHcCCC--CccccCCCCcchHHHhhhhhHHHHHhhhcc-------------cHHHHHHHhccHHHHHHHHHhhcc-ccc
Confidence            9999874  445567899999999988888887776543             478889999999999999987765 556


Q ss_pred             cCCCCChHHHHHHhc---CChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCC
Q 039828          247 KNEEGLYPFHLASAN---GCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDD  323 (626)
Q Consensus       247 ~d~~g~tpLh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~  323 (626)
                      .+..|.||||.|+..   +..+++++|+++|.+++   .+|..|+||||+|+.+|+.+++++|++.|    +++|.+|..
T Consensus       207 ~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g----a~~n~~d~~  279 (351)
T 3utm_A          207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVN---EKNKDFMTPLHVAAERAHNDVMEVLHKHG----AKMNALDSL  279 (351)
T ss_dssp             CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT---CCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTT
T ss_pred             CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC---CcCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCC
Confidence            788999999999999   55899999999876554   45889999999999999999999999998    889999999


Q ss_pred             CCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHh
Q 039828          324 GNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ  368 (626)
Q Consensus       324 G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~  368 (626)
                      |+||||+|+..|+.+++++|+++| ++++.+|..|+||+++|.+.
T Consensus       280 g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~~g~tal~~a~~~  323 (351)
T 3utm_A          280 GQTALHRAALAGHLQTCRLLLSYG-SDPSIISLQGFTAAQMGNEA  323 (351)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHSCHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCChhhhhhHH
Confidence            999999999999999999999999 99999999999999998554

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.2e-40  Score=329.66  Aligned_cols=265  Identities=20%  Similarity=0.214  Sum_probs=193.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHH
Q 039828           51 KGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLA  130 (626)
Q Consensus        51 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~  130 (626)
                      +|+||||.|++.|+.++|++|++.+++++.           ..+..|.||||+|+.       .++          .+++
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-----------~~~~~g~t~L~~A~~-------~g~----------~~~v   55 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNF-----------QEEEGGWTPLHNAVQ-------MSR----------EDIV   55 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTC-----------CCTTTCCCHHHHHHH-------TTC----------HHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCccc-----------ccCCCCCcHHHHHHH-------cCC----------HHHH
Confidence            355666666666666666666665554321           014455666666665       555          6666


Q ss_pred             HHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccc
Q 039828          131 RSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALL  210 (626)
Q Consensus       131 ~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~  210 (626)
                      ++|++++.++. ..+..|.||||+|+..|+.+++++|++.+..  ....+..|.||||.|+..|+.+++++|++.+ ..+
T Consensus        56 ~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~  131 (285)
T 1wdy_A           56 ELLLRHGADPV-LRKKNGATPFLLAAIAGSVKLLKLFLSKGAD--VNECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANV  131 (285)
T ss_dssp             HHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCT
T ss_pred             HHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCccCcccCCHHHHHHHhCCHHHHHHHHHhC-CCc
Confidence            66666655554 4555566666666666666666666665542  2333445666666666666666666666655 333


Q ss_pred             ccc----------CCCCCchhhHHhhCCCHHHHHHhhhc-CCCcccccCCCCChHHHHHHhcCC----hHHHHHHHhccC
Q 039828          211 LIQ----------DEQMNTPMHWAASVDHLEGVRFLYEI-NPDSVLQKNEEGLYPFHLASANGC----VPVMGEFLEKEN  275 (626)
Q Consensus       211 ~~~----------d~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~g~  275 (626)
                      +..          +..|.||||+|+..|+.+++++|++. +.+ ++..|..|.||||.|+..++    .+++++|+++|.
T Consensus       132 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~  210 (285)
T 1wdy_A          132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA  210 (285)
T ss_dssp             TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCC
Confidence            333          77889999999999999999999987 655 78889999999999999998    899999999876


Q ss_pred             CCCCcccccCCCchHHHHHHHcCChHHHHHHHH-cCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccccc
Q 039828          276 MPHPNELFNNKGQNILHVAAKKGRDVSVTHILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDII  354 (626)
Q Consensus       276 ~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~-~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~  354 (626)
                      +++   .+|..|+||||+|+.+|+.+++++|++ .+    .+++.+|..|+||||+|+..++.+++++|+++| ++++.+
T Consensus       211 ~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g----~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G-a~~~~~  282 (285)
T 1wdy_A          211 DVN---VRGERGKTPLILAVEKKHLGLVQRLLEQEH----IEINDTDSDGKTALLLAVELKLKKIAELLCKRG-ASTDCG  282 (285)
T ss_dssp             CSS---CCCTTSCCHHHHHHHTTCHHHHHHHHHSSS----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-SCSCCS
T ss_pred             CCC---CcCCCCCcHHHHHHHcCCHHHHHHHHhccC----CCccccCCCCCcHHHHHHHcCcHHHHHHHHHcC-CCCCcc
Confidence            554   458889999999999999999999999 55    788999999999999999999999999999999 999988


Q ss_pred             cc
Q 039828          355 NF  356 (626)
Q Consensus       355 n~  356 (626)
                      |.
T Consensus       283 d~  284 (285)
T 1wdy_A          283 DL  284 (285)
T ss_dssp             SC
T ss_pred             cc
Confidence            74

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-39  Score=326.79  Aligned_cols=268  Identities=16%  Similarity=0.123  Sum_probs=242.3

Q ss_pred             cCCCCcHHHHHHhcCCCccccHHHHHHHHhhCccccccc-ccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhH
Q 039828           10 SPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQ-NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKF   88 (626)
Q Consensus        10 ~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~-d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~   88 (626)
                      +.+|+|+||+|+..|+   .+  ++++|++.+++ ++.. +..|.||||+|+..|+.+++++|+++|+++.         
T Consensus         2 ~~~g~~~L~~A~~~g~---~~--~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---------   66 (285)
T 1wdy_A            2 AVEDNHLLIKAVQNED---VD--LVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV---------   66 (285)
T ss_dssp             HHHHHHHHHHHHHTTC---HH--HHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------
T ss_pred             CcccchHHHHHHHcCC---HH--HHHHHHHcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc---------
Confidence            3468999999999999   88  99999999887 5555 8889999999999999999999999998653         


Q ss_pred             HHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 039828           89 LMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYIL  168 (626)
Q Consensus        89 ~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  168 (626)
                         .+|..|.||||+|+.       .++          .+++++|++++.+++ ..+..|.||||+|+..|+.+++++|+
T Consensus        67 ---~~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll  125 (285)
T 1wdy_A           67 ---LRKKNGATPFLLAAI-------AGS----------VKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLY  125 (285)
T ss_dssp             ---CCCTTCCCHHHHHHH-------HTC----------HHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHH
T ss_pred             ---ccCCCCCCHHHHHHH-------cCC----------HHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHH
Confidence               478899999999999       999          999999999999987 77899999999999999999999999


Q ss_pred             HhCCCCCcccc--------ccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCC----HHHHHHh
Q 039828          169 EALPVNDDCDA--------KLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDH----LEGVRFL  236 (626)
Q Consensus       169 ~~~~~~~~~~~--------~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~----~~~v~~L  236 (626)
                      +.+...+....        +..|.||||.|+..|+.+++++|++..+..++..|..|.||||+|+..++    .+++++|
T Consensus       126 ~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~L  205 (285)
T 1wdy_A          126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL  205 (285)
T ss_dssp             HTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHH
T ss_pred             HhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHH
Confidence            99875443221        56799999999999999999999998558899999999999999999999    9999999


Q ss_pred             hhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHh-ccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchh
Q 039828          237 YEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE-KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDK  315 (626)
Q Consensus       237 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~  315 (626)
                      ++.+++ ++.+|..|.||||+|+..|+.+++++|++ .|.+   .+.+|..|+||||+|+.+++.+++++|+++|    +
T Consensus       206 l~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G----a  277 (285)
T 1wdy_A          206 LDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIAELLCKRG----A  277 (285)
T ss_dssp             HHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS----S
T ss_pred             HHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC---ccccCCCCCcHHHHHHHcCcHHHHHHHHHcC----C
Confidence            999988 88899999999999999999999999999 5544   4456899999999999999999999999999    7


Q ss_pred             hcccCC
Q 039828          316 LINEMD  321 (626)
Q Consensus       316 ~in~~d  321 (626)
                      +++.+|
T Consensus       278 ~~~~~d  283 (285)
T 1wdy_A          278 STDCGD  283 (285)
T ss_dssp             CSCCSS
T ss_pred             CCCccc
Confidence            777776

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6.9e-40  Score=338.01  Aligned_cols=282  Identities=20%  Similarity=0.213  Sum_probs=247.5

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhcc-CCCCHHHHHHHhhhhhhccCCCCCCCCCCcHH
Q 039828           49 NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNV-RGNTALHEALNALQDAKKDKNKPKEDGVTSLD  127 (626)
Q Consensus        49 d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~-~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~  127 (626)
                      +.+|+||||.|+++|+.++|++|+++|++++            .++. .|.||||+|+.       .++          .
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn------------~~~~~~g~TpLh~A~~-------~g~----------~   72 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVN------------FQEEEGGWTPLHNAVQ-------MSR----------E   72 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCCTT------------CCCTTTCCCHHHHHHH-------TTC----------H
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCC------------ccCCCCCcCHHHHHHH-------cCC----------H
Confidence            4568899999999999999999999999764            3444 59999999999       999          9


Q ss_pred             HHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCC
Q 039828          128 SLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQP  207 (626)
Q Consensus       128 ~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~  207 (626)
                      +++++|+++++++. ..+..+.+|++.++..+...++..+++.+.  +....+..|.||+|.|+..|+.+++++|++.+ 
T Consensus        73 ~iv~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~g-  148 (337)
T 4g8k_A           73 DIVELLLRHGADPV-LRKKNGATPFILAAIAGSVKLLKLFLSKGA--DVNECDFYGFTAFMEAAVYGKVKALKFLYKRG-  148 (337)
T ss_dssp             HHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHTTTC--CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-
T ss_pred             HHHHHHHHcCCchh-hhccCCCchhHHHHhcccchhhHHhhhccc--hhhhhccCCCCHHHHHHHcCcHHHHHHHHHcC-
Confidence            99999999999988 788999999999999999999999999876  44556778999999999999999999999987 


Q ss_pred             cccc----------ccCCCCCchhhHHhhCCCHHHHHHhhhc-CCCcccccCCCCChHHHHHHhcCC----hHHHHHHHh
Q 039828          208 ALLL----------IQDEQMNTPMHWAASVDHLEGVRFLYEI-NPDSVLQKNEEGLYPFHLASANGC----VPVMGEFLE  272 (626)
Q Consensus       208 ~~~~----------~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~  272 (626)
                      ..++          ..+..|.||||+|+..|+.+++++|++. +++ ++..|..|.||+|.++..+.    .+++++|++
T Consensus       149 a~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~  227 (337)
T 4g8k_A          149 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLD  227 (337)
T ss_dssp             CCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred             CCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHH
Confidence            3333          3456799999999999999999999975 565 88899999999998876554    457899999


Q ss_pred             ccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccc
Q 039828          273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD  352 (626)
Q Consensus       273 ~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~  352 (626)
                      +|++++   .+|..|+||||+|+..|+.+++++|++..   ..++|.+|.+|+||||+|++.|+.+++++|+++| +++|
T Consensus       228 ~gad~n---~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~---~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G-Ad~n  300 (337)
T 4g8k_A          228 HGADVN---VRGERGKTPLILAVEKKHLGLVQRLLEQE---HIEINDTDSDGKTALLLAVELKLKKIAELLCKRG-ASTD  300 (337)
T ss_dssp             TTCCTT---CCCGGGCCHHHHHHHTTCHHHHHHHHTST---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS-CSST
T ss_pred             CCCCCC---CcCCCCCCHHHHHHHhhhhHHHHHHHHhc---CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCC
Confidence            886654   45889999999999999999999999863   3789999999999999999999999999999999 8886


Q ss_pred             ccccCCCCHHHHHHHhcccccccc
Q 039828          353 IINFYGQTAYDIAEQQYAKIIPEF  376 (626)
Q Consensus       353 ~~n~~g~tpl~la~~~~~~~i~~~  376 (626)
                      .     .+||++|+..++.+++++
T Consensus       301 ~-----~~~L~~A~~~~~~~iv~~  319 (337)
T 4g8k_A          301 C-----GDLVMTARRNYDHSLVKV  319 (337)
T ss_dssp             T-----CCHHHHHHHTTCHHHHHH
T ss_pred             C-----CCHHHHHHHcCCHHHHHH
Confidence            5     469999999988777765

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.6e-38  Score=325.58  Aligned_cols=297  Identities=19%  Similarity=0.192  Sum_probs=250.5

Q ss_pred             cccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchh
Q 039828            6 KTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQID   85 (626)
Q Consensus         6 ~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   85 (626)
                      .+.+|..|+||||+||..|+   .+  ++++|++.+.+ ++.+|..|+||||+|+..|+.++|++|+++|+++       
T Consensus        51 ~~~~d~~g~t~L~~A~~~g~---~~--~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-------  117 (351)
T 3utm_A           51 CHASDGRKSTPLHLAAGYNR---VR--IVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-------  117 (351)
T ss_dssp             CCCSSTTCCCHHHHHHHTTC---HH--HHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------
T ss_pred             cccCCCCCCCHHHHHHHcCC---HH--HHHHHHHcCCC-CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-------
Confidence            45678999999999999999   88  99999999876 8999999999999999999999999999999865       


Q ss_pred             hhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHH
Q 039828           86 VKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILE  165 (626)
Q Consensus        86 ~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  165 (626)
                           +..|..|.||||+|+.       .++          .+++++|++++.++. ..+..|.+|+++|+..+..+.+.
T Consensus       118 -----~~~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~g~~~~-~~~~~g~~~l~~a~~~~~~~~~~  174 (351)
T 3utm_A          118 -----NAMDLWQFTPLHEAAS-------KNR----------VEVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRERLT  174 (351)
T ss_dssp             -----TCCCTTCCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCCTTSCCHHHHCSSHHHHHHHH
T ss_pred             -----CCCCCCCCCHHHHHHH-------cCC----------HHHHHHHHHcCCCCc-cccCCCCcchHHHhhhhhHHHHH
Confidence                 3478899999999999       999          999999999999987 77999999999999988888887


Q ss_pred             HHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhC---CCHHHHHHhhhcCCC
Q 039828          166 YILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASV---DHLEGVRFLYEINPD  242 (626)
Q Consensus       166 ~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~  242 (626)
                      +....              .++..++..++.+.++.++... ......+..|.||||+|+..   +..+++++|++.+.+
T Consensus       175 ~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~  239 (351)
T 3utm_A          175 YEFKG--------------HSLLQAAREADLAKVKKTLALE-IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN  239 (351)
T ss_dssp             HHHHH--------------HHHHHHHHTTCHHHHHHHTTTC-CTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC
T ss_pred             hhhcc--------------cHHHHHHHhccHHHHHHHHHhh-cccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC
Confidence            76653              3678888999999999999887 34445778899999999999   558999999999988


Q ss_pred             cccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCC
Q 039828          243 SVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDD  322 (626)
Q Consensus       243 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~  322 (626)
                       ++.+|..|.||||+|+..|+.+++++|+++|.+++.   +|..|+||||+|+.+|+.+++++|++.|    ++++.+|.
T Consensus       240 -~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~---~d~~g~t~L~~A~~~~~~~~v~~Ll~~g----ad~~~~~~  311 (351)
T 3utm_A          240 -VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA---LDSLGQTALHRAALAGHLQTCRLLLSYG----SDPSIISL  311 (351)
T ss_dssp             -TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHHTCHHHHHHHHHTT----CCTTCCCT
T ss_pred             -cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC---cCCCCCCHHHHHHHcCcHHHHHHHHHcC----CCCCCcCC
Confidence             888999999999999999999999999998866544   5899999999999999999999999998    88999999


Q ss_pred             CCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhc
Q 039828          323 DGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQY  369 (626)
Q Consensus       323 ~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~  369 (626)
                      .|+||+|+|    ..+++++|.+...    ....++.+++..|++.|
T Consensus       312 ~g~tal~~a----~~~~~~~l~~~~~----~~~~~~~~~l~~A~~~g  350 (351)
T 3utm_A          312 QGFTAAQMG----NEAVQQILSESTP----MRTSDVDYRLLEASKAG  350 (351)
T ss_dssp             TSCCHHHHS----CHHHHHHHHHC-----------------------
T ss_pred             CCCChhhhh----hHHHHHHHHhccc----cccCcceeehhhhhccC
Confidence            999999998    6788888887762    33456778888887764

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=5.5e-39  Score=335.81  Aligned_cols=289  Identities=15%  Similarity=0.179  Sum_probs=219.8

Q ss_pred             CcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhh
Q 039828           14 NTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMK   93 (626)
Q Consensus        14 ~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~   93 (626)
                      .++++-+...|+   .+  ++++++..      .+|..|+||||+|+..++ ++++.|+...              ++..
T Consensus        67 ~~~~~~~~~~g~---~~--~~~~~~~~------~~~~~g~t~L~~Aa~~~~-~~~~~L~~~~--------------~n~~  120 (373)
T 2fo1_E           67 QGYGNGNDFLGD---FN--HTNLQIPT------EPEPESPIKLHTEAAGSY-AITEPITRES--------------VNII  120 (373)
T ss_dssp             --------------------------------------CCCHHHHHHHSSS-CCCSCCSTTT--------------TTTC
T ss_pred             cccCCCCCcccc---cc--cccccccc------CCCCCCccHHHHHhcCCc-hHHHHhcccc--------------cccc
Confidence            345666777788   77  77776543      468899999999999654 7777775422              2346


Q ss_pred             c-cCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 039828           94 N-VRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALP  172 (626)
Q Consensus        94 ~-~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  172 (626)
                      | ..|.||||+|+.       .++....  ...+...++.|++.+.+++ ..|.+|.||||+|+..|+.+++++|++.++
T Consensus       121 d~~~g~t~Lh~Aa~-------~g~~~~v--~~Ll~~~~~~ll~~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  190 (373)
T 2fo1_E          121 DPRHNRTVLHWIAS-------NSSAEKS--EDLIVHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGA  190 (373)
T ss_dssp             CCSSCCCHHHHHHC-------TTCCSCC--TTHHHHHHHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CCcCCCCHHHHHHH-------CCCHHHH--HHHHHHHHHHHHhcCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCC
Confidence            6 789999999998       7772111  1112344566678999987 778999999999999999999999999987


Q ss_pred             CCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCC--ccccccCCCCCchhhHHhhCC---CHHHHHHhhhcCCCcccc-
Q 039828          173 VNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQP--ALLLIQDEQMNTPMHWAASVD---HLEGVRFLYEINPDSVLQ-  246 (626)
Q Consensus       173 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~d~~g~tpLh~Aa~~g---~~~~v~~Ll~~~~~~~~~-  246 (626)
                      .  ....+..|.||||.|+..|+.+++++|++.+.  .+++..|..|.||||+|+..+   +.+++++|++.+++ ++. 
T Consensus       191 ~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~  267 (373)
T 2fo1_E          191 D--PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK-VDYD  267 (373)
T ss_dssp             C--SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCC-SSCC
T ss_pred             C--CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCC-cccc
Confidence            4  44556689999999999999999999998763  467888999999999999988   89999999999887 432 


Q ss_pred             -------cCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhccc
Q 039828          247 -------KNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINE  319 (626)
Q Consensus       247 -------~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~  319 (626)
                             .|..|.||||+|+..|+.+++++|++++  ....+.+|..|+||||+|+.+|+.+++++|++.|    ++++.
T Consensus       268 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g----ad~~~  341 (373)
T 2fo1_E          268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK--GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG----ASVEA  341 (373)
T ss_dssp             SGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS--CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT----CCSSC
T ss_pred             cccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc--CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCccC
Confidence                   5778999999999999999999999864  2334556899999999999999999999999998    88999


Q ss_pred             CCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828          320 MDDDGNTPLHLAALYGHYFVAVILGKDG  347 (626)
Q Consensus       320 ~d~~G~TpLhlA~~~~~~~iv~~Ll~~g  347 (626)
                      +|..|+||||+|+..|+.+++++|++++
T Consensus       342 ~d~~g~t~l~~A~~~g~~~iv~~Ll~~~  369 (373)
T 2fo1_E          342 VDATDHTARQLAQANNHHNIVDIFDRCR  369 (373)
T ss_dssp             CCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999999999999999887

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.8e-39  Score=336.27  Aligned_cols=308  Identities=16%  Similarity=0.187  Sum_probs=220.1

Q ss_pred             CCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHh
Q 039828           13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEM   92 (626)
Q Consensus        13 g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~   92 (626)
                      -+.+|+.++..|+   .+  .++.++++.... .    .-.++++-+...|+.+++++++...                 
T Consensus        37 ~~~~l~~~~~~~~---~~--~~~~~~~~~~~~-~----~~~~~~~~~~~~g~~~~~~~~~~~~-----------------   89 (373)
T 2fo1_E           37 SQHSLLEASYDGY---IK--RQRNELQHYSLY-P----NPQGYGNGNDFLGDFNHTNLQIPTE-----------------   89 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccCCcc---cc--chhhhhhhhccc-c----CccccCCCCCccccccccccccccC-----------------
Confidence            4556777888888   77  777777765442 1    2245677788889999999887542                 


Q ss_pred             hccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccC-CCCCcHHHHHHHcCCHHHHHHHH---
Q 039828           93 KNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMN-VDCKSPLYLAVESKNEDILEYIL---  168 (626)
Q Consensus        93 ~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~~~v~~Ll---  168 (626)
                      ++..|.||||+|+.       .+.           ++++.|+..  +++ ..| ..|+||||+|+..|+.+++++|+   
T Consensus        90 ~~~~g~t~L~~Aa~-------~~~-----------~~~~~L~~~--~~n-~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~  148 (373)
T 2fo1_E           90 PEPESPIKLHTEAA-------GSY-----------AITEPITRE--SVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHE  148 (373)
T ss_dssp             ----CCCHHHHHHH-------SSS-----------CCCSCCSTT--TTT-TCCCSSCCCHHHHHHCTTCCSCCTTHHHHH
T ss_pred             CCCCCccHHHHHhc-------CCc-----------hHHHHhccc--ccc-ccCCcCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            57889999999997       443           344555544  333 344 78999999999999998888776   


Q ss_pred             -----HhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcC---
Q 039828          169 -----EALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEIN---  240 (626)
Q Consensus       169 -----~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~---  240 (626)
                           +.+.  +....+..|.||||+|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++.+   
T Consensus       149 ~~~ll~~ga--~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  225 (373)
T 2fo1_E          149 AKECIAAGA--DVNAMDCDENTPLMLAVLARRRRLVAYLMKAG-ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK  225 (373)
T ss_dssp             HHHHHHTCC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH
T ss_pred             HHHHHhcCC--CCcCCCCCCCCHHHHHHHcChHHHHHHHHHCC-CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccc
Confidence                 5665  44556678999999999999999999999998 778899999999999999999999999999987   


Q ss_pred             CCcccccCCCCChHHHHHHhcC---ChHHHHHHHhccCCCCC-----cccccCCCchHHHHHHHcCChHHHHHHHHcCCc
Q 039828          241 PDSVLQKNEEGLYPFHLASANG---CVPVMGEFLEKENMPHP-----NELFNNKGQNILHVAAKKGRDVSVTHILEASDL  312 (626)
Q Consensus       241 ~~~~~~~d~~g~tpLh~A~~~g---~~~~v~~Ll~~g~~~~~-----~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~  312 (626)
                      .+ .+..|..|.||||+|+..+   +.+++++|+++|.+++.     .+..|..|+||||+|+.+|+.+++++|++.+  
T Consensus       226 ~~-~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~--  302 (373)
T 2fo1_E          226 GD-IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK--  302 (373)
T ss_dssp             HT-TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS--
T ss_pred             cC-hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc--
Confidence            44 7788999999999999998   89999999999877765     2235778999999999999999999999875  


Q ss_pred             chhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccccc
Q 039828          313 TDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF  376 (626)
Q Consensus       313 ~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~  376 (626)
                       ..++|.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|+||+|+|...++.+++++
T Consensus       303 -~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~l~~A~~~g~~~iv~~  364 (373)
T 2fo1_E          303 -GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDI  364 (373)
T ss_dssp             -CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred             -CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccCCCCCCCCHHHHHHHcCCHHHHHH
Confidence             3789999999999999999999999999999999 9999999999999999999999888776

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.3e-38  Score=317.25  Aligned_cols=271  Identities=16%  Similarity=0.133  Sum_probs=200.3

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHH
Q 039828           48 QNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLD  127 (626)
Q Consensus        48 ~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~  127 (626)
                      ....|.|+||+|+..|+.+.+..++..++........ ....++.+|..|+||||+|+.       .++          .
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~g~t~L~~Aa~-------~g~----------~   72 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRL-LSNPLMGDAVSDWSPMHEAAI-------HGH----------Q   72 (285)
T ss_dssp             -------------------------------CCSEEC-CCCTTCSSSCCSCCHHHHHHH-------TTC----------H
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhh-hhCcccCCCccCCCHHHHHHH-------cCC----------H
Confidence            4568999999999999988887777665432111000 111245688999999999999       999          9


Q ss_pred             HHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCC
Q 039828          128 SLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQP  207 (626)
Q Consensus       128 ~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~  207 (626)
                      ++++.|++++.+++ ..|.+|.||||+|+..|+.+++++|++.+.  +....+..|.||||.|+..|+.+++++|++.+ 
T Consensus        73 ~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-  148 (285)
T 3d9h_A           73 LSLRNLISQGWAVN-IITADHVSPLHEACLGGHLSCVKILLKHGA--QVNGVTADWHTPLFNACVSGSWDCVNLLLQHG-  148 (285)
T ss_dssp             HHHHHHHHTTCCSC-EECTTCCCHHHHHHHTTCHHHHHHHHHTTC--CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-
T ss_pred             HHHHHHHHCCCCCC-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCC-
Confidence            99999999998887 788899999999999999999999999876  44456678999999999999999999999988 


Q ss_pred             ccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCC
Q 039828          208 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKG  287 (626)
Q Consensus       208 ~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g  287 (626)
                      ..++. +..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++.|.+++    .+..|
T Consensus       149 ~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----~~~~g  222 (285)
T 3d9h_A          149 ASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGADVN----QGKGQ  222 (285)
T ss_dssp             CCSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT----CCBTT
T ss_pred             CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC----CCCCC
Confidence            44443 44599999999999999999999999887 78889999999999999999999999999876655    27889


Q ss_pred             chHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccc
Q 039828          288 QNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD  352 (626)
Q Consensus       288 ~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~  352 (626)
                      +||||+|+.+++.+++++|++.|    ++++.+|.+|+||||+|+  ++.+++++|++...+++.
T Consensus       223 ~t~L~~A~~~~~~~~v~~Ll~~g----ad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          223 DSPLHAVVRTASEELACLLMDFG----ADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP  281 (285)
T ss_dssp             BCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence            99999999999999999999998    889999999999999999  456899999988546654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.2e-37  Score=311.30  Aligned_cols=255  Identities=16%  Similarity=0.119  Sum_probs=205.3

Q ss_pred             cCCCCcHHHHHHhcCCCccccHHHHHHHHhhCc----------ccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCC
Q 039828           10 SPSGNTLLHIAAAGSIRNHENMAMATTLARKYP----------FLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMT   79 (626)
Q Consensus        10 ~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~----------~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~   79 (626)
                      +..|.|+||+|+..|+   .+  .+..++...+          ..++.+|..|+||||+||..|+.++|++|++.|+++ 
T Consensus        12 ~~~~~~~lH~Aa~~g~---~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-   85 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGK---QG--GMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-   85 (285)
T ss_dssp             -----------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-
T ss_pred             chHHHHHHHHHhhcCC---CC--CcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-
Confidence            4679999999999999   66  6666655432          235678999999999999999999999999998765 


Q ss_pred             CccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcC
Q 039828           80 SSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESK  159 (626)
Q Consensus        80 ~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  159 (626)
                                 +.+|.+|.||||+|+.       .++          .+++++|++++.+++ ..|..|.||||+|+..|
T Consensus        86 -----------~~~~~~g~t~L~~A~~-------~g~----------~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~  136 (285)
T 3d9h_A           86 -----------NIITADHVSPLHEACL-------GGH----------LSCVKILLKHGAQVN-GVTADWHTPLFNACVSG  136 (285)
T ss_dssp             -----------CEECTTCCCHHHHHHH-------TTC----------HHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHT
T ss_pred             -----------CCcCCCCCCHHHHHHH-------CCc----------HHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcC
Confidence                       3588999999999999       999          999999999999987 78999999999999999


Q ss_pred             CHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhc
Q 039828          160 NEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEI  239 (626)
Q Consensus       160 ~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~  239 (626)
                      +.+++++|++.+...+   .+..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++.
T Consensus       137 ~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  212 (285)
T 3d9h_A          137 SWDCVNLLLQHGASVQ---PESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKKLLES  212 (285)
T ss_dssp             CHHHHHHHHHTTCCSS---CSCTTSCHHHHHHHHTCHHHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence            9999999999887433   2345999999999999999999999998 67888999999999999999999999999999


Q ss_pred             CCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcC
Q 039828          240 NPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEAS  310 (626)
Q Consensus       240 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~  310 (626)
                      +++ ++ .+..|.||||+|+..|+.+++++|+++|.+++   .+|..|+||||+|+  ++.+++++|++..
T Consensus       213 ga~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~---~~d~~g~t~l~~A~--~~~~~~~~Ll~~~  276 (285)
T 3d9h_A          213 GAD-VN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQ---AKNAEGKRPVELVP--PESPLAQLFLERE  276 (285)
T ss_dssp             TCC-TT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCCGGGGSC--TTSHHHHHHHHHC
T ss_pred             CCC-CC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---CcCCCCCCHHHHhc--CccHHHHHHHHhh
Confidence            988 55 48899999999999999999999999886654   45999999999999  4579999999983

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.5e-38  Score=329.90  Aligned_cols=271  Identities=17%  Similarity=0.133  Sum_probs=175.1

Q ss_pred             cccccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccc
Q 039828            4 TFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQ   83 (626)
Q Consensus         4 ~~~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~   83 (626)
                      -..+..|.+|.||||+||..|+   .+  ++++|++.+.+ ++.+|..|.||||+||..|+.++|++|++++++.     
T Consensus        11 ~~~~~~d~~g~t~L~~Aa~~g~---~~--~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----   79 (364)
T 3ljn_A           11 LNRIKSDDENMEKIHVAARKGQ---TD--EVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-----   79 (364)
T ss_dssp             -----CCHHHHHHHHHHHHHTC---HH--HHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----
T ss_pred             CCccccCCCCCCHHHHHHHcCC---HH--HHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----
Confidence            3456778899999999999999   88  99999999876 8999999999999999999999999999999854     


Q ss_pred             hhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcC----CCCcccc----------------
Q 039828           84 IDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSE----DPNASYL----------------  143 (626)
Q Consensus        84 ~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~----~~~~~~~----------------  143 (626)
                               .+.+|.||||+|+.       .++          .+++++|++.    +.+....                
T Consensus        80 ---------~~~~g~t~L~~A~~-------~g~----------~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (364)
T 3ljn_A           80 ---------SLWHGQKPIHLAVM-------ANK----------TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHV  133 (364)
T ss_dssp             ---------CCBTTBCHHHHHHH-------TTC----------HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEE
T ss_pred             ---------cccCCCCHHHHHHH-------cCC----------HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhcccc
Confidence                     34589999999999       999          9999999998    5554420                


Q ss_pred             cCCCCCcHHHHHHHcC--CHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchh
Q 039828          144 MNVDCKSPLYLAVESK--NEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPM  221 (626)
Q Consensus       144 ~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  221 (626)
                      .+..|.||||+|+..|  +.+++++|++.+.                                    +++..|..|.|||
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga------------------------------------~~~~~d~~g~t~L  177 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGA------------------------------------SPTAKDKADETPL  177 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTC------------------------------------CTTCCCTTSCCHH
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCC------------------------------------CCcccCCCCCCHH
Confidence            3444555555555555  4555555555443                                    3444444445555


Q ss_pred             hHHhhCCCHHHHHHhhhcCCCc----ccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHc
Q 039828          222 HWAASVDHLEGVRFLYEINPDS----VLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKK  297 (626)
Q Consensus       222 h~Aa~~g~~~~v~~Ll~~~~~~----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~  297 (626)
                      |+|+..|+.+++++|++.+++.    ++..|..|.||||+|+..|+.+++++|+++|++++   .+|..|+||||+|+.+
T Consensus       178 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~---~~d~~g~tpL~~A~~~  254 (364)
T 3ljn_A          178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN---MEDNEHTVPLYLSVRA  254 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTT---CCCTTSCCHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCCCHHHHHHHh
Confidence            5555555555555555444332    33444455555555555555555555555443332   2244555555555555


Q ss_pred             CChHHHHHHHHcCCcc--------hhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcc
Q 039828          298 GRDVSVTHILEASDLT--------DKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAES  351 (626)
Q Consensus       298 ~~~~i~~~Ll~~~~~~--------~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~  351 (626)
                      |+.+++++|++.+...        .......+..|+|||+.|+..++.+.+..|+..+ ++.
T Consensus       255 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~-~~~  315 (364)
T 3ljn_A          255 AMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK-LDE  315 (364)
T ss_dssp             CCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH-HHH
T ss_pred             ChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH-HHH
Confidence            5555555555544211        1122235667888888888888777777777666 443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=7.2e-38  Score=326.47  Aligned_cols=280  Identities=18%  Similarity=0.161  Sum_probs=222.8

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCC
Q 039828           45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVT  124 (626)
Q Consensus        45 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~  124 (626)
                      .+..|..|.||||+||..|+.++|++|++.|+++            +.+|..|.||||+|+.       .++        
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~------------~~~d~~g~t~L~~A~~-------~g~--------   65 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP------------TIQNRFGCTALHLACK-------FGC--------   65 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHH-------HCC--------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------------cccCCCCCcHHHHHHH-------cCC--------
Confidence            5567889999999999999999999999998765            3478889999999998       888        


Q ss_pred             cHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh
Q 039828          125 SLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHD  204 (626)
Q Consensus       125 ~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  204 (626)
                        .+++++|++++++..   +.+|.||||+|+..|+.+++++|++.+..        .|..+-..........       
T Consensus        66 --~~~v~~Ll~~g~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--------~~~~~~~~~~~~~~~~-------  125 (364)
T 3ljn_A           66 --VDTAKYLASVGEVHS---LWHGQKPIHLAVMANKTDLVVALVEGAKE--------RGQMPESLLNECDERE-------  125 (364)
T ss_dssp             --HHHHHHHHHHCCCCC---CBTTBCHHHHHHHTTCHHHHHHHHHHHHH--------HTCCHHHHHTCCCCCC-------
T ss_pred             --HHHHHHHHHCCCCcc---ccCCCCHHHHHHHcCCHHHHHHHHHhccc--------cCCCHHHHHhhcchHh-------
Confidence              999999999988544   45788999999999999999999887220        0111100000000000       


Q ss_pred             cCCccccccCCCCCchhhHHhhCC--CHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCC--Cc
Q 039828          205 KQPALLLIQDEQMNTPMHWAASVD--HLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH--PN  280 (626)
Q Consensus       205 ~~~~~~~~~d~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~--~~  280 (626)
                      ......+..|..|.||||+|+..|  +.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|.+..  ..
T Consensus       126 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~  204 (364)
T 3ljn_A          126 VNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL  204 (364)
T ss_dssp             EEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT
T ss_pred             hhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc
Confidence            001224457889999999999999  99999999999988 88899999999999999999999999999876521  14


Q ss_pred             ccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccc--------
Q 039828          281 ELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD--------  352 (626)
Q Consensus       281 ~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~--------  352 (626)
                      +.+|..|+||||+|+.+|+.+++++|++.|    +++|.+|..|+||||+|+..|+.+++++|++++ ++++        
T Consensus       205 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g----ad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~  279 (364)
T 3ljn_A          205 DYANKQGNSHLHWAILINWEDVAMRFVEMG----IDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT-DVFLIQACPYHN  279 (364)
T ss_dssp             TCCCTTCCCTTHHHHTTTCHHHHHHHHTTT----CCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHS-CHHHHHTCTTBS
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcC-CchhhhcCcccC
Confidence            556899999999999999999999999998    889999999999999999999999999999987 5543        


Q ss_pred             ----ccccCCCCHHHHHHHhccc-cccccc
Q 039828          353 ----IINFYGQTAYDIAEQQYAK-IIPEFS  377 (626)
Q Consensus       353 ----~~n~~g~tpl~la~~~~~~-~i~~~~  377 (626)
                          ..+..++||++.|+..++. .+..++
T Consensus       280 ~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll  309 (364)
T 3ljn_A          280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLL  309 (364)
T ss_dssp             SSSBCGGGCCCCTTSCSSCCHHHHHHHHHH
T ss_pred             cccccccccccccchhhhhccCHHHHHHHH
Confidence                3677899999887776643 333333

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=9.4e-37  Score=301.20  Aligned_cols=241  Identities=17%  Similarity=0.153  Sum_probs=122.9

Q ss_pred             HHhhccCCCCHHHHHHHhhhhhhccCCCCC---CCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHH
Q 039828           90 MEMKNVRGNTALHEALNALQDAKKDKNKPK---EDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEY  166 (626)
Q Consensus        90 l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  166 (626)
                      ++.+|.+|.||||+|+.       .|+...   ........++++.|+++++++....|..|.||||+|+..|+.+++++
T Consensus         3 vn~~d~~g~tpL~~A~~-------~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~   75 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASC-------SGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKR   75 (253)
T ss_dssp             --------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHh-------ccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHH
Confidence            56789999999999998       552000   00000016667777777766665556667777777777777777777


Q ss_pred             HHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccc
Q 039828          167 ILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQ  246 (626)
Q Consensus       167 Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~  246 (626)
                      |++.+..  ....+..|.||||.|+..|+.+++++|++.++..++..|..|.||||+|+..|+.+++++|++.+++ ++.
T Consensus        76 Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~  152 (253)
T 1yyh_A           76 LLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNA  152 (253)
T ss_dssp             HHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTC
T ss_pred             HHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCC
Confidence            7776552  2334445666666666666666666666666545666666666666666666666666666666655 555


Q ss_pred             cCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCC
Q 039828          247 KNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNT  326 (626)
Q Consensus       247 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~T  326 (626)
                      .|..|.||||+|+..|+.+++++|+++|.+++.   +|..|+||||+|+.+|+.+++++|++.|    ++++.+|..|+|
T Consensus       153 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~---~~~~g~tpL~~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~t  225 (253)
T 1yyh_A          153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM---QNNREETPLFLAAREGSYETAKVLLDHF----ANRDITDHMDRL  225 (253)
T ss_dssp             BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC---cCCCCCCHHHHHHHCCCHHHHHHHHHcC----CCccccccCCCC
Confidence            666666666666666666666666665544332   3566666666666666666666666665    556666666666


Q ss_pred             HHHHHHHhCCHHHHHHHhhCC
Q 039828          327 PLHLAALYGHYFVAVILGKDG  347 (626)
Q Consensus       327 pLhlA~~~~~~~iv~~Ll~~g  347 (626)
                      |||+|+..|+.+++++|....
T Consensus       226 pl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          226 PRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             HHHHHHHTTCHHHHHHHHC--
T ss_pred             HHHHHHHcCCHHHHHHHHHHh
Confidence            666666666666666665443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.6e-36  Score=299.51  Aligned_cols=229  Identities=20%  Similarity=0.209  Sum_probs=148.7

Q ss_pred             cccccCCCCcHHHHHHhcC-------------CCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 039828            6 KTITSPSGNTLLHIAAAGS-------------IRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILV   72 (626)
Q Consensus         6 ~~~~~~~g~t~LH~Aa~~g-------------~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll   72 (626)
                      .+.+|.+|+||||+|+..|             +   .+  ++++|++.+++..+..|..|+||||+|+..|+.++|++|+
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~---~~--~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   77 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDA---PA--VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL   77 (253)
T ss_dssp             ------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCC---hH--HHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            4678999999999999987             5   67  8999998888766667888999999999999999999999


Q ss_pred             HccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHH
Q 039828           73 DCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPL  152 (626)
Q Consensus        73 ~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL  152 (626)
                      ++|+++            +.+|..|.||||+|+.       .++          .+++++|+++++......+..|.|||
T Consensus        78 ~~g~~~------------~~~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~~~~~~~~~~~~g~t~L  128 (253)
T 1yyh_A           78 EASADA------------NIQDNMGRTPLHAAVS-------ADA----------QGVFQILIRNRATDLDARMHDGTTPL  128 (253)
T ss_dssp             HTTCCT------------TCCCTTSCCHHHHHHH-------HTC----------HHHHHHHHHSTTSCTTCCCTTCCCHH
T ss_pred             HcCCCC------------CCCCCCCCCHHHHHHH-------cCC----------HHHHHHHHHcCCCCccccCCCCCcHH
Confidence            888765            3467788888888888       778          88888888887733336777888888


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHH
Q 039828          153 YLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEG  232 (626)
Q Consensus       153 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~  232 (626)
                      |+|+..|+.+++++|++.+..  ....+..|.||||.|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.++
T Consensus       129 ~~A~~~~~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~~~~  205 (253)
T 1yyh_A          129 ILAARLAVEGMLEDLINSHAD--VNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYET  205 (253)
T ss_dssp             HHHHHHTCSSHHHHHHHTTCC--TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHcChHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHCCCHHH
Confidence            888888888888888887663  3344556777777777777777777777776 5666777777777777777777777


Q ss_pred             HHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHh
Q 039828          233 VRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE  272 (626)
Q Consensus       233 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~  272 (626)
                      +++|++++++ .+.+|..|.||+|+|+.+|+.+++++|..
T Consensus       206 v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~  244 (253)
T 1yyh_A          206 AKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDL  244 (253)
T ss_dssp             HHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHcCCC-ccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence            7777777776 66677777777777777777777777776

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.2e-36  Score=305.04  Aligned_cols=270  Identities=16%  Similarity=0.105  Sum_probs=183.8

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCC
Q 039828           45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVT  124 (626)
Q Consensus        45 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~  124 (626)
                      ++.+|.+|+||||+||..|+.++|++|++.+++.         ..++.+|..|.||||+|+.       .++        
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---------~~~~~~~~~g~t~L~~A~~-------~g~--------   57 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---------EYLDLQNDLGQTALHLAAI-------LGE--------   57 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---------GGGGCCCTTSCCHHHHHHH-------HTC--------
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc---------ccccccCCCCCCHHHHHHH-------cCC--------
Confidence            4667888888888888888888888888887652         1245678888888888888       888        


Q ss_pred             cHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh
Q 039828          125 SLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHD  204 (626)
Q Consensus       125 ~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  204 (626)
                        .+++++|++++++++ ..+..|.||||+|+..|+.+++++|++.++........    +.                +.
T Consensus        58 --~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~----------------~~  114 (282)
T 1oy3_D           58 --ASTVEKLYAAGAGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD----TY----------------LT  114 (282)
T ss_dssp             --HHHHHHHHHTTCCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------------------
T ss_pred             --HHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHH----HH----------------hh
Confidence              888888888888887 67888899999999999999999998876632211100    00                00


Q ss_pred             cCCccccccCCCCCchhhHHhhCCCHHHH-HHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccc
Q 039828          205 KQPALLLIQDEQMNTPMHWAASVDHLEGV-RFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELF  283 (626)
Q Consensus       205 ~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v-~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~  283 (626)
                      .   ........+.++++.++..+..... ..+...+.+ .+..+..|.||||+|+..|+.+++++|+++|.+++..+  
T Consensus       115 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--  188 (282)
T 1oy3_D          115 Q---SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE--  188 (282)
T ss_dssp             --------------------------------CCCGGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC--
T ss_pred             c---ccccCcchhcchhhhccccccchhhhhhhhhhhhc-CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCC--
Confidence            0   0112234556777777766554433 344444444 77889999999999999999999999999886665441  


Q ss_pred             cCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHH
Q 039828          284 NNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYD  363 (626)
Q Consensus       284 d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~  363 (626)
                      +..|+||||+|+.+|+.+++++|++.|    ++++.+|..|+||||+|+..++.+++++|+++| ++++.+|..|.||++
T Consensus       189 ~~~g~tpL~~A~~~~~~~~v~~Ll~~g----ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~  263 (282)
T 1oy3_D          189 PTCGRTPLHLAVEAQAASVLELLLKAG----ADPTARMYGGRTPLGSALLRPNPILARLLRAHG-APEPEDGGDKLSPCS  263 (282)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT-CCCCCCC--------
T ss_pred             CCCCcCHHHHHHHcCCHHHHHHHHHcC----CCCcccccCCCCHHHHHHHcCCcHHHHHHHHcC-CCcCcCCCccccccc
Confidence            245999999999999999999999998    889999999999999999999999999999999 999999999999999


Q ss_pred             HHHHhcccc
Q 039828          364 IAEQQYAKI  372 (626)
Q Consensus       364 la~~~~~~~  372 (626)
                      +|......+
T Consensus       264 ~a~~~~~~~  272 (282)
T 1oy3_D          264 SSGSDSDSD  272 (282)
T ss_dssp             ---------
T ss_pred             ccCCccccc
Confidence            999875543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=6.4e-36  Score=292.54  Aligned_cols=229  Identities=21%  Similarity=0.231  Sum_probs=143.9

Q ss_pred             cccccCCCCcHHHHHHhcCCCccccHHHHHHHHh---hCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCcc
Q 039828            6 KTITSPSGNTLLHIAAAGSIRNHENMAMATTLAR---KYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSS   82 (626)
Q Consensus         6 ~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~---~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~   82 (626)
                      .+.+|.+|+||||+||..|+   .+  ++++|++   ..+..++.+|..|.||||+|+..|+.+++++|++.|+++.   
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~---~~--~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---   73 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGN---LP--AVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM---   73 (241)
T ss_dssp             -----CTTCCHHHHHHHTTC---HH--HHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---
T ss_pred             ccccCCCCCcHHHHHHHcCC---HH--HHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc---
Confidence            45677788888888888887   77  7777776   2344477777788888888888888888888887776542   


Q ss_pred             chhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCC----CcccccCCCCCcHHHHHHHc
Q 039828           83 QIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDP----NASYLMNVDCKSPLYLAVES  158 (626)
Q Consensus        83 ~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~----~~~~~~~~~g~tpL~~A~~~  158 (626)
                               ..|..|.||||+|+.       .++          .++++.|++.++    ++. ..+..|.||||+|+..
T Consensus        74 ---------~~~~~g~t~l~~A~~-------~~~----------~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~  126 (241)
T 1k1a_A           74 ---------ALDRHGQTAAHLACE-------HRS----------PTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNT  126 (241)
T ss_dssp             ---------CCCTTSCCHHHHHHH-------TTC----------HHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHH
T ss_pred             ---------ccCCCCCCHHHHHHH-------cCC----------HHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHc
Confidence                     356667777777777       666          777777777665    333 4556666666666666


Q ss_pred             CCHHHHHHHHHhCCCCCccccc-cCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhh
Q 039828          159 KNEDILEYILEALPVNDDCDAK-LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY  237 (626)
Q Consensus       159 g~~~~v~~Ll~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll  237 (626)
                      |+.+++++|++.+...  ...+ ..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|+
T Consensus       127 ~~~~~~~~Ll~~g~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  203 (241)
T 1k1a_A          127 ECQETVQLLLERGADI--DAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLV  203 (241)
T ss_dssp             TCHHHHHHHHHTTCCT--TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCc--ccccccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            6666666666665532  2222 34666666666666666666666655 455555666666666666666666666666


Q ss_pred             hcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhc
Q 039828          238 EINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK  273 (626)
Q Consensus       238 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  273 (626)
                      +++++ ++.+|..|.||||+|+..|+.++++.|.++
T Consensus       204 ~~ga~-~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          204 RSGAD-SSLKNCHNDTPLMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             HTTCC-TTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred             hcCCC-CCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence            66555 555566666666666666666666655543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=7.9e-36  Score=299.03  Aligned_cols=227  Identities=21%  Similarity=0.168  Sum_probs=159.6

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCC-ccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchh
Q 039828          143 LMNVDCKSPLYLAVESKNEDILEYILEALPVND-DCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPM  221 (626)
Q Consensus       143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  221 (626)
                      ..|.+|.||||+|+..|+.+++++|++.++... ....+..|.||||+|+..|+.+++++|++.+ ..++.+|..|.|||
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~tpL   82 (282)
T 1oy3_D            4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG-AGVLVAERGGHTAL   82 (282)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTSCCHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHH
Confidence            456677777777777777777777777655322 3344556777777777777777777777776 56667777777777


Q ss_pred             hHHhhCCCHHHHHHhhhcCCCc------------ccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCch
Q 039828          222 HWAASVDHLEGVRFLYEINPDS------------VLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQN  289 (626)
Q Consensus       222 h~Aa~~g~~~~v~~Ll~~~~~~------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t  289 (626)
                      |+|+..|+.+++++|++.+++.            .......+.++++.++..+.......++.  ......+.++..|+|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE--DWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CC--CGGGGTTCCCTTSCC
T ss_pred             HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhh--hhhhcCCCcCCCCcC
Confidence            7777777777777777765441            12334567888888887766555544443  223344566899999


Q ss_pred             HHHHHHHcCChHHHHHHHHcCCcchhhcccCCCC-CCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHh
Q 039828          290 ILHVAAKKGRDVSVTHILEASDLTDKLINEMDDD-GNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ  368 (626)
Q Consensus       290 ~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~-G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~  368 (626)
                      |||+|+.+|+.+++++|++.|    ++++.++.. |+||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g----~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~  235 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAG----ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLR  235 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHT----CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTS
T ss_pred             HHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHc
Confidence            999999999999999999998    888888865 999999999999999999999999 99999999999999999999


Q ss_pred             ccccccccc
Q 039828          369 YAKIIPEFS  377 (626)
Q Consensus       369 ~~~~i~~~~  377 (626)
                      ++.++++++
T Consensus       236 ~~~~~v~~L  244 (282)
T 1oy3_D          236 PNPILARLL  244 (282)
T ss_dssp             SCHHHHHHH
T ss_pred             CCcHHHHHH
Confidence            999888875

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.4e-35  Score=283.63  Aligned_cols=226  Identities=19%  Similarity=0.192  Sum_probs=170.1

Q ss_pred             cCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHH
Q 039828           10 SPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFL   89 (626)
Q Consensus        10 ~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~   89 (626)
                      +..++++||.|+..|+   .+  .++++++.++..++.+|..|+||||+|+..|+.++|++|++.+++++          
T Consensus         3 ~~~~~~~l~~A~~~g~---~~--~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------   67 (231)
T 3aji_A            3 GCVSNIMICNLAYSGK---LD--ELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----------   67 (231)
T ss_dssp             CCCSSSHHHHHHHHTC---HH--HHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC----------
T ss_pred             CccccchHHHHHHhCC---HH--HHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC----------
Confidence            4568899999999999   88  99999998888788889999999999999999999999999887653          


Q ss_pred             HHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 039828           90 MEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILE  169 (626)
Q Consensus        90 l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  169 (626)
                        .+|..|.||||+|+.       .++          .+++++|++++.+++ ..+..|.||||+|+..|+.+++++|++
T Consensus        68 --~~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~  127 (231)
T 3aji_A           68 --DKDDAGWSPLHIAAS-------AGX----------DEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLE  127 (231)
T ss_dssp             --CCCTTSCCHHHHHHH-------HTC----------HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --CcCCCCCCHHHHHHH-------cCH----------HHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence              367788888888888       778          888888888888776 667778888888888888888888887


Q ss_pred             hCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCC
Q 039828          170 ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNE  249 (626)
Q Consensus       170 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~  249 (626)
                      .+..  ....+..|.||||.|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++++++ ++.+|.
T Consensus       128 ~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~  203 (231)
T 3aji_A          128 GGAN--PDAKDHYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIENK  203 (231)
T ss_dssp             TTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCT
T ss_pred             cCCC--CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCC
Confidence            7653  3334445667777777777777777777665 55566666666666666666666666666666665 556666


Q ss_pred             CCChHHHHHHhcCChHHHHHHHhcc
Q 039828          250 EGLYPFHLASANGCVPVMGEFLEKE  274 (626)
Q Consensus       250 ~g~tpLh~A~~~g~~~~v~~Ll~~g  274 (626)
                      .|.||+|+|+..++.+++++|.++|
T Consensus       204 ~g~t~l~~A~~~~~~~i~~lL~~~~  228 (231)
T 3aji_A          204 EEKTPLQVAKGGLGLILKRLAEGEE  228 (231)
T ss_dssp             TSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHhhHHHHHHHHHcccc
Confidence            6666666666666666666666543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.1e-35  Score=284.10  Aligned_cols=218  Identities=23%  Similarity=0.243  Sum_probs=128.9

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhh
Q 039828          143 LMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMH  222 (626)
Q Consensus       143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh  222 (626)
                      ..|.+|.||||+|+..|+.+++++|++.+..  ....+..|.||||.|+..|+.+++++|++.+ ..++..|..|.||||
T Consensus         6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGAN--IDTCSEDQRTPLMEAAENNHLEAVKYLIKAG-ALVDPKDAEGSTCLH   82 (237)
T ss_dssp             CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCCCCCCTTSCCHHH
T ss_pred             cccCCCCCHHHHHHHcCcHHHHHHHHHcCCC--cCccCCCCCCHHHHHHHhCCHHHHHHHHhCC-CCCCCCCCCCCcHHH
Confidence            3455555666666666666666666655442  2233344556666666666666666666555 445555566666666


Q ss_pred             HHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHH
Q 039828          223 WAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVS  302 (626)
Q Consensus       223 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i  302 (626)
                      +|+..|+.+++++|++.++...+..+..|.||||.|+..|+.+++++|+++|.+++   .++..|+||||+|+..|+.++
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~  159 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN---IRDNEENICLHWAAFSGCVDI  159 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---ccCCCCCCHHHHHHHCCCHHH
Confidence            66666666666666666533355556666666666666666666666666554332   235556666666666666666


Q ss_pred             HHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhccc
Q 039828          303 VTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAK  371 (626)
Q Consensus       303 ~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~  371 (626)
                      +++|++.+    .+++.+|..|+||||+|+..++.+++++|+++| ++++.+|.+|+||+|+|...++.
T Consensus       160 ~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          160 AEILLAAK----CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQV  223 (237)
T ss_dssp             HHHHHTTT----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCHH
T ss_pred             HHHHHHcC----CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHHH
Confidence            66666665    555666666666666666666666666666666 66666666666666666655543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.3e-34  Score=282.72  Aligned_cols=220  Identities=21%  Similarity=0.210  Sum_probs=105.5

Q ss_pred             ccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhh
Q 039828            7 TITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDV   86 (626)
Q Consensus         7 ~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   86 (626)
                      +..|.+|+||||+||..|+   .+  ++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+++.       
T Consensus         5 ~~~~~~g~t~L~~A~~~g~---~~--~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------   71 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGH---VD--ICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-------   71 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTC---HH--HHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-------
T ss_pred             ccccCCCCCHHHHHHHcCc---HH--HHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-------
Confidence            3445555555555555555   55  55555555443 45555555555555555555555555555554331       


Q ss_pred             hHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHH
Q 039828           87 KFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEY  166 (626)
Q Consensus        87 ~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  166 (626)
                           .++..|.||||+|+.       .++          .+++++|+++++......+..|.||||+|+..|+.+++++
T Consensus        72 -----~~~~~g~t~L~~A~~-------~~~----------~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  129 (237)
T 3b7b_A           72 -----PKDAEGSTCLHLAAK-------KGH----------YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL  129 (237)
T ss_dssp             -----CCCTTSCCHHHHHHH-------TTC----------HHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             -----CCCCCCCcHHHHHHH-------cCC----------HHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHH
Confidence                 244445555555555       455          5555555555422222444445555555555555555555


Q ss_pred             HHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccc
Q 039828          167 ILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQ  246 (626)
Q Consensus       167 Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~  246 (626)
                      |++.+..  ....+..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++++++ ++.
T Consensus       130 Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~  205 (237)
T 3b7b_A          130 LLSKGSD--INIRDNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTL  205 (237)
T ss_dssp             HHHTTCC--TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTC
T ss_pred             HHHCCCC--CCccCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC-CCc
Confidence            5554432  2222333444444444444444444444444 33344444444444444444444444444444443 334


Q ss_pred             cCCCCChHHHHHHhcCChH
Q 039828          247 KNEEGLYPFHLASANGCVP  265 (626)
Q Consensus       247 ~d~~g~tpLh~A~~~g~~~  265 (626)
                      +|..|.||||+|+.+|+.+
T Consensus       206 ~d~~g~t~l~~A~~~~~~~  224 (237)
T 3b7b_A          206 KNKEGETPLQCASLNSQVW  224 (237)
T ss_dssp             CCTTSCCHHHHSCTTCHHH
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence            4444444444444444443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5e-35  Score=286.18  Aligned_cols=223  Identities=19%  Similarity=0.184  Sum_probs=119.8

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHH----hCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCc
Q 039828          144 MNVDCKSPLYLAVESKNEDILEYILE----ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNT  219 (626)
Q Consensus       144 ~~~~g~tpL~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  219 (626)
                      +|.+|.||||+|+..|+.+++++|++    .+.  +....+..|.||||.|+..|+.+++++|++.+ ..++..|..|.|
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t   81 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR--ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG-ASPMALDRHGQT   81 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTC--CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCcccccCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCC
Confidence            34455555555555555555555554    222  22233334555555555555555555555554 444455555555


Q ss_pred             hhhHHhhCCCHHHHHHhhhcCCC---cccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCccccc-CCCchHHHHHH
Q 039828          220 PMHWAASVDHLEGVRFLYEINPD---SVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFN-NKGQNILHVAA  295 (626)
Q Consensus       220 pLh~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d-~~g~t~Lh~A~  295 (626)
                      |||+|+..|+.+++++|++.++.   ..+..|..|.||||.|+..|+.+++++|+++|.+++..   + ..|+||||+|+
T Consensus        82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~---~~~~g~t~L~~A~  158 (241)
T 1k1a_A           82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV---DIKSGRSPLIHAV  158 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC---CTTTCCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc---cccCCCcHHHHHH
Confidence            55555555555555555555441   14445555556666666666666666665544333322   3 45556666666


Q ss_pred             HcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhccccccc
Q 039828          296 KKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPE  375 (626)
Q Consensus       296 ~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~  375 (626)
                      .+++.+++++|++.|    ++++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|+||+|+|.+.++.++.+
T Consensus       159 ~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~i~~  233 (241)
T 1k1a_A          159 ENNSLSMVQLLLQHG----ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILR  233 (241)
T ss_dssp             HTTCHHHHHHHHHTT----CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCCCCcCCCCCCHHHHHHhcCcHHHHh
Confidence            666666666666555    555555556666666666666666666666555 566666666666666665555555554


Q ss_pred             cc
Q 039828          376 FS  377 (626)
Q Consensus       376 ~~  377 (626)
                      .+
T Consensus       234 ~l  235 (241)
T 1k1a_A          234 GK  235 (241)
T ss_dssp             C-
T ss_pred             hh
Confidence            43

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.6e-34  Score=279.28  Aligned_cols=219  Identities=22%  Similarity=0.177  Sum_probs=128.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhC
Q 039828          148 CKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASV  227 (626)
Q Consensus       148 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~  227 (626)
                      +.+|||.|+..|+.+.++++++.++.. ....+..|.||||.|+..|+.+++++|++.+ ..++..|..|.||||+|+..
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGG-GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHH
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhh-hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC-CCCCCcCCCCCCHHHHHHHc
Confidence            455566666666666666555554311 2233445556666666666666666666554 44555556666666666666


Q ss_pred             CCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHH
Q 039828          228 DHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL  307 (626)
Q Consensus       228 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll  307 (626)
                      |+.+++++|++.+++ .+..|..|.||||.|+..|+.+++++|+++|.+++.   +|..|+||||+|+.+|+.+++++|+
T Consensus        84 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll  159 (231)
T 3aji_A           84 GXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYDATAMHRAAAKGNLKMVHILL  159 (231)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC---cCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            666666666666555 455556666666666666666666666665543332   3555666666666666666666666


Q ss_pred             HcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhccccccccc
Q 039828          308 EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFS  377 (626)
Q Consensus       308 ~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~~  377 (626)
                      +.+    .+++.+|..|+||||+|+..++.+++++|+++| ++++.+|..|+||+++|...++.++.+++
T Consensus       160 ~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~lL  224 (231)
T 3aji_A          160 FYK----ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEEKTPLQVAKGGLGLILKRLA  224 (231)
T ss_dssp             HTT----CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHSCHHHHHHHHHHH
T ss_pred             hcC----CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhhHHHHHHHHH
Confidence            655    555666666666666666666666666666665 66666666666666666665555555544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3e-34  Score=278.21  Aligned_cols=212  Identities=19%  Similarity=0.179  Sum_probs=145.8

Q ss_pred             CCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHh
Q 039828           13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEM   92 (626)
Q Consensus        13 g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~   92 (626)
                      |+||||+||..|+   .+  ++++|++.++...+.+|..|+||||+|+..|+.+++++|++.+++..          ++.
T Consensus         2 g~t~L~~A~~~g~---~~--~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~----------~~~   66 (228)
T 2dzn_A            2 SNYPLHQACMENE---FF--KVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN----------LDD   66 (228)
T ss_dssp             -CCHHHHHHHTTC---HH--HHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC----------GGG
T ss_pred             CccHHHHHHHhCC---HH--HHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc----------ccc
Confidence            6788888888888   77  88888888887777788888888888888888888888888875431          122


Q ss_pred             -hccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 039828           93 -KNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSED--PNASYLMNVDCKSPLYLAVESKNEDILEYILE  169 (626)
Q Consensus        93 -~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  169 (626)
                       .+..|.||||+|+.       .++          .++++.|++++  +++. ..+..|.||||+|+..|+.+++++|++
T Consensus        67 ~~~~~g~t~L~~A~~-------~~~----------~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~  128 (228)
T 2dzn_A           67 YPDDSGWTPFHIACS-------VGN----------LEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIE  128 (228)
T ss_dssp             CCCTTSCCHHHHHHH-------HCC----------HHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHH-------cCC----------HHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHH
Confidence             56677777777777       677          77777777776  5554 556667777777777777777777777


Q ss_pred             hCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhh-hcCCCcccccC
Q 039828          170 ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY-EINPDSVLQKN  248 (626)
Q Consensus       170 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll-~~~~~~~~~~d  248 (626)
                      .+..  ....+..|.||||.|+..|+.+++++|++.++.+++.+|..|.||||+|+..|+.+++++|+ +.+++ ++..|
T Consensus       129 ~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~~  205 (228)
T 2dzn_A          129 NGAS--VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVD  205 (228)
T ss_dssp             TTCC--SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCBC
T ss_pred             cCCC--ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC-CCccC
Confidence            6552  33344456666666666666666666666665555666666666666666666666666666 55555 55566


Q ss_pred             CCCChHHHHHHh
Q 039828          249 EEGLYPFHLASA  260 (626)
Q Consensus       249 ~~g~tpLh~A~~  260 (626)
                      ..|.||+|+|+.
T Consensus       206 ~~g~t~l~~A~~  217 (228)
T 2dzn_A          206 NKGAKAEDVALN  217 (228)
T ss_dssp             TTSCBGGGGCSS
T ss_pred             CCCCcHHHHHHH
Confidence            666666666644

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=9e-34  Score=274.83  Aligned_cols=211  Identities=27%  Similarity=0.281  Sum_probs=110.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcC--CccccccCCCCCchhhHHh
Q 039828          148 CKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQ--PALLLIQDEQMNTPMHWAA  225 (626)
Q Consensus       148 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~Aa  225 (626)
                      |.||||+|+..|+.+++++|++.++.. ....+..|.||||.|+..|+.+++++|++.+  +......|..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            344555555555555555555443311 1113334455555555555555555555444  1111114455555555555


Q ss_pred             hCCCHHHHHHhhhcC--CCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHH
Q 039828          226 SVDHLEGVRFLYEIN--PDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSV  303 (626)
Q Consensus       226 ~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~  303 (626)
                      ..|+.+++++|++.+  ++ .+..+..|.||||.|+..|+.+++++|+++|.+++   .+|..|+||||+|+..|+.+++
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v  156 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR---IKDKFNQIPLHRAASVGSLKLI  156 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC---CCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc---ccCCCCCCHHHHHHHcCCHHHH
Confidence            555555555555554  33 44455555555555555555555555555543332   2355556666666666666666


Q ss_pred             HHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHh-hCCCCcccccccCCCCHHHHHHH
Q 039828          304 THILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILG-KDGRAESDIINFYGQTAYDIAEQ  367 (626)
Q Consensus       304 ~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll-~~g~~d~~~~n~~g~tpl~la~~  367 (626)
                      ++|++.+   ..++|.+|..|+||||+|+..|+.+++++|+ +.| ++++.+|.+|+||+|+|.+
T Consensus       157 ~~Ll~~g---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g-a~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          157 ELLCGLG---KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG-AEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             HHHHTTT---CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-CCSCCBCTTSCBGGGGCSS
T ss_pred             HHHHhcC---cccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC-CCCCccCCCCCcHHHHHHH
Confidence            6665554   2445555666666666666666666666666 455 6666666666666666543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=288.58  Aligned_cols=225  Identities=17%  Similarity=0.188  Sum_probs=133.3

Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcH
Q 039828           47 MQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL  126 (626)
Q Consensus        47 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~  126 (626)
                      .+|..+.+||+.||..|+.++|++|++.+++...    +....++..+..|.||||.|+.       .++         .
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~----~~~~~~~~~~~~~~t~L~~a~~-------~~~---------~   65 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLE----DAEDTVSAADPEFCHPLCQCPK-------CAP---------A   65 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccc----cccccccccCccCCCHHHHHHH-------hCC---------H
Confidence            4677888999999999999999999998875421    1122345567777788887776       333         0


Q ss_pred             HHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcC
Q 039828          127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQ  206 (626)
Q Consensus       127 ~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  206 (626)
                      ..+++.|++.|.+++ ..|.+|+||||+|+..|+.+++++|++.++                                  
T Consensus        66 ~~~v~~Ll~~Gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a----------------------------------  110 (269)
T 4b93_B           66 QKRLAKVPASGLGVN-VTSQDGSSPLHVAALHGRADLIPLLLKHGA----------------------------------  110 (269)
T ss_dssp             ---------CCCCTT-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTC----------------------------------
T ss_pred             HHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCC----------------------------------
Confidence            346667777777765 566667777777777777666666666544                                  


Q ss_pred             CccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCC
Q 039828          207 PALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNK  286 (626)
Q Consensus       207 ~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~  286 (626)
                        +++..+..|.||+|+|+..++.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|++++   .++..
T Consensus       111 --~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn---~~~~~  184 (269)
T 4b93_B          111 --NAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN---ASNNK  184 (269)
T ss_dssp             --CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT---CBCTT
T ss_pred             --CcCccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC---ccccC
Confidence              2334455566666666666666666666666665 56667777777777777777777777777665443   34677


Q ss_pred             CchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCC
Q 039828          287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGH  336 (626)
Q Consensus       287 g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~  336 (626)
                      |+||||+|+.+|+.+++++|++.|    +++|.+|.+|+||||+|+++++
T Consensus       185 g~t~Lh~A~~~g~~~~v~~Ll~~G----ad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          185 GNTALHEAVIEKHVFVVELLLLHG----ASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHHHTT----CCSCCCCTTSCCSGGGSCTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHHHHHHhCCc
Confidence            777777777777777777777776    6777778888888888776654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=287.93  Aligned_cols=217  Identities=24%  Similarity=0.254  Sum_probs=172.3

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCC------ccccccCCCCHHHHHHHhCCHH-HHHHHHhcCCccccccCC
Q 039828          143 LMNVDCKSPLYLAVESKNEDILEYILEALPVND------DCDAKLEGKSPVKVAIELQKLG-LLKMMHDKQPALLLIQDE  215 (626)
Q Consensus       143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~------~~~~~~~g~t~L~~A~~~g~~~-~v~~Ll~~~~~~~~~~d~  215 (626)
                      .+|..+.+||+.|+..|+.++|++|++.++...      ....+..+.|||+.|+..+..+ +++.|++.+ .+++..|.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G-advn~~d~   84 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASG-LGVNVTSQ   84 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CC-CCTTCCCT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCC-CCCCCcCC
Confidence            356678899999999999999999999876321      2334567899999999887754 788899888 78999999


Q ss_pred             CCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHH
Q 039828          216 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAA  295 (626)
Q Consensus       216 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~  295 (626)
                      +|+||||+|+..|+.+++++|++.+++ ++..+..|.||+|.|+..++.++++.|++.|.+++   .+|..|+||||+|+
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n---~~d~~g~TpL~~A~  160 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN---KKDLSGNTPLIYAC  160 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC---CCCTTCCCHHHHHH
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCCC---CCCCCCCCHHHHHH
Confidence            999999999999999999999999998 88899999999999999999999999999886654   45899999999999


Q ss_pred             HcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhc
Q 039828          296 KKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQY  369 (626)
Q Consensus       296 ~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~  369 (626)
                      .+|+.+++++|++.|    +++|.+|..|+||||+|+..|+.+++++|+++| +|++.+|.+|+||||+|++.+
T Consensus       161 ~~g~~~~v~~Ll~~g----advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          161 SGGHHELVALLLQHG----ASINASNNKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             HTTCGGGHHHHHHTT----CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTC
T ss_pred             HCCCHHHHHHHHHCC----CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCC
Confidence            999999999999998    889999999999999999999999999999999 999999999999999997654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.5e-34  Score=289.13  Aligned_cols=238  Identities=21%  Similarity=0.224  Sum_probs=143.8

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHH
Q 039828           49 NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDS  128 (626)
Q Consensus        49 d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~  128 (626)
                      +..|.||||.||..|+.++|++|++.|+++            +..|..|.||||+|+.       .++          .+
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~-------~g~----------~~   87 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADI------------NYANVDGLTALHQACI-------DDN----------VD   87 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCT------------TCBCTTCCBHHHHHHH-------TTC----------HH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCC------------cccCCCCCCHHHHHHH-------cCC----------HH
Confidence            446778888888888888888888887754            3367778888888887       777          78


Q ss_pred             HHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCc
Q 039828          129 LARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPA  208 (626)
Q Consensus       129 i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  208 (626)
                      ++++|++++++++ ..|..|.||||+|+..|+.+++++|++++..  ....+..|.||||.|+..++.++++.++.....
T Consensus        88 ~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~  164 (299)
T 1s70_B           88 MVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAH--VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV  164 (299)
T ss_dssp             HHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC--CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCC
Confidence            8888888877776 5677777777777777777777777777653  333445567777777777777776666655433


Q ss_pred             cccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCc
Q 039828          209 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQ  288 (626)
Q Consensus       209 ~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~  288 (626)
                      .++..+..+.++++        ..+..++..+.......+..|.||||+|+..|+.+++++|+++|.+++   .+|..|+
T Consensus       165 ~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~---~~d~~g~  233 (299)
T 1s70_B          165 DIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN---IKDYDGW  233 (299)
T ss_dssp             CHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT---CCCTTCC
T ss_pred             CchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC---CcCCCCC
Confidence            33332222222222        122333333333333444455555555555555555555555443332   2345555


Q ss_pred             hHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHH
Q 039828          289 NILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAAL  333 (626)
Q Consensus       289 t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~  333 (626)
                      ||||+|+.+|+.+++++|++.|    ++++.+|..|+||||+|+.
T Consensus       234 tpL~~A~~~~~~~~v~~Ll~~g----ad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          234 TPLHAAAHWGKEEACRILVENL----CDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCTTTSCCS
T ss_pred             cHHHHHHhcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHH
Confidence            5555555555555555555554    4455555555555555543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.3e-33  Score=269.16  Aligned_cols=213  Identities=17%  Similarity=0.165  Sum_probs=197.1

Q ss_pred             HHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcC
Q 039828          127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQ  206 (626)
Q Consensus       127 ~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  206 (626)
                      .+++++|+++++++....|..|.||||+|+..|+.+++++|++.+..  ....+..|.||||.|+..|+.+++++|++.+
T Consensus         4 ~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            4 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             -CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             HHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            67889999999999877899999999999999999999999999774  4456678999999999999999999999999


Q ss_pred             CccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCC
Q 039828          207 PALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNK  286 (626)
Q Consensus       207 ~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~  286 (626)
                      +..++..+..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|.+++   .+|..
T Consensus        82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~  157 (223)
T 2f8y_A           82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD---MQNNR  157 (223)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTT
T ss_pred             CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---CcCCC
Confidence            778899999999999999999999999999999988 88899999999999999999999999999876554   45889


Q ss_pred             CchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCc
Q 039828          287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAE  350 (626)
Q Consensus       287 g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d  350 (626)
                      |+||||+|+.+++.+++++|++.|    ++++.+|..|.||||+|+..++.+++++|+++| +.
T Consensus       158 g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g-~~  216 (223)
T 2f8y_A          158 EETPLFLAAREGSYETAKVLLDHF----ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN-LV  216 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CS
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcC----CCCccccccCCCHHHHHHHhcchHHHHHHHHcC-CC
Confidence            999999999999999999999998    788999999999999999999999999999998 43

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-34  Score=291.91  Aligned_cols=272  Identities=19%  Similarity=0.194  Sum_probs=222.1

Q ss_pred             HHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCC
Q 039828           58 VAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSED  137 (626)
Q Consensus        58 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~  137 (626)
                      .++..++.+.++.++.............   .....+..|.||||.|+.       .|+          .++++.|++++
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~t~l~~A~~-------~g~----------~~~v~~Ll~~g   63 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKR---KKTKVKFDDGAVFLAACS-------SGD----------TEEVLRLLERG   63 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCC---SCCCCEECHHHHHHHHHH-------HTC----------HHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHccccccccccccC---cccccccCCccHHHHHHH-------cCC----------HHHHHHHHHcC
Confidence            4677778888888887665442211110   111245678899999999       999          99999999999


Q ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCC
Q 039828          138 PNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQM  217 (626)
Q Consensus       138 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g  217 (626)
                      ++++ ..|..|.||||+|+..|+.+++++|++.+..  ....+..|.||||+|+..|+.+++++|++.+ .+++..|..|
T Consensus        64 ~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g  139 (299)
T 1s70_B           64 ADIN-YANVDGLTALHQACIDDNVDMVKFLVENGAN--INQPDNEGWIPLHAAASCGYLDIAEYLISQG-AHVGAVNSEG  139 (299)
T ss_dssp             CCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTS
T ss_pred             CCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCcCCCC
Confidence            9987 6789999999999999999999999999874  4455668999999999999999999999998 7788899999


Q ss_pred             CchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHc
Q 039828          218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKK  297 (626)
Q Consensus       218 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~  297 (626)
                      .||||+|+..++.++++.++.......+..+..+.++++.        .+..++..+....  ...+..|.||||+|+.+
T Consensus       140 ~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~--~~~~~~g~t~L~~A~~~  209 (299)
T 1s70_B          140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR--------DARQWLNSGHIND--VRHAKSGGTALHVAAAK  209 (299)
T ss_dssp             CCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------HHHHHHHHTCCCC--CCCTTTCCCHHHHHHHH
T ss_pred             CCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH--------HHHHHHhccCcch--hhhcCCCCCHHHHHHHC
Confidence            9999999999999999988876444344333333344432        3445565443332  33578899999999999


Q ss_pred             CChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHh
Q 039828          298 GRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ  368 (626)
Q Consensus       298 ~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~  368 (626)
                      |+.+++++|++.|    +++|.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|+||+|+|.+.
T Consensus       210 g~~~~v~~Ll~~g----~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          210 GYTEVLKLLIQAR----YDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             TCHHHHHHHHTTT----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCSG
T ss_pred             CcHHHHHHHHHcC----CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHH
Confidence            9999999999998    889999999999999999999999999999999 99999999999999999653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=269.01  Aligned_cols=231  Identities=17%  Similarity=0.143  Sum_probs=200.5

Q ss_pred             hhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 039828           92 MKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEAL  171 (626)
Q Consensus        92 ~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  171 (626)
                      ..|..|.||||.|+.       .++          .++++.|++.+.++. ..+..|.||||+|+..|+.+++++|++.+
T Consensus         4 ~~d~~~~~~l~~A~~-------~g~----------~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   65 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQ-------YGI----------YERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKG   65 (240)
T ss_dssp             CCSCGGGCCHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccccccchHHHHHHH-------cCC----------hHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            367889999999999       999          999999999998887 67889999999999999999999999987


Q ss_pred             CCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCC
Q 039828          172 PVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEG  251 (626)
Q Consensus       172 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g  251 (626)
                      +.... ..+..|.||||.|+..|+.+++++|++.+ ..++..|..|.||||+|+..|+.+++++|++.+++ ++..+..|
T Consensus        66 ~~~~~-~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g  142 (240)
T 3eu9_A           66 AIVDQ-LGGDLNSTPLHWATRQGHLSMVVQLMKYG-ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNG  142 (240)
T ss_dssp             CCTTC-CBTTTTBCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred             Ccchh-hcCCcCCChhHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCC
Confidence            74332 23345899999999999999999999987 67788899999999999999999999999999887 77889999


Q ss_pred             ChHHHHHHhcCC-hHHHHHHHhccCCCCCcccccC-CCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHH
Q 039828          252 LYPFHLASANGC-VPVMGEFLEKENMPHPNELFNN-KGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLH  329 (626)
Q Consensus       252 ~tpLh~A~~~g~-~~~v~~Ll~~g~~~~~~~~~d~-~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLh  329 (626)
                      .||||.|+..++ .+++++|++.|.+++..   +. .|+||||+|+.+++.+++++|++.|    ++++.+|..|+||||
T Consensus       143 ~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~l~  215 (240)
T 3eu9_A          143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLG---DKYHKNTALHWAVLAGNTTVISLLLEAG----ANVDAQNIKGESALD  215 (240)
T ss_dssp             CCHHHHHHHHCCSSTTHHHHHHTTCCTTCC---CTTTCCCHHHHHHHHTCHHHHHHHHHHT----CCTTCBCTTSCBHHH
T ss_pred             CcHHHHHHHhCChHHHHHHHHhcCCCcchh---hccCCCcHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHH
Confidence            999999996665 88999999977555443   44 8999999999999999999999998    888999999999999


Q ss_pred             HHHHhCCHHHHHHHhhCCCCcc
Q 039828          330 LAALYGHYFVAVILGKDGRAES  351 (626)
Q Consensus       330 lA~~~~~~~iv~~Ll~~g~~d~  351 (626)
                      +|+..++.+++++|++.+ .+.
T Consensus       216 ~A~~~~~~~~v~~L~~~~-~~~  236 (240)
T 3eu9_A          216 LAKQRKNVWMINHLQEAR-QAK  236 (240)
T ss_dssp             HHHHTTCHHHHHHHHHHC----
T ss_pred             HHHHcCcHHHHHHHHHhh-hcc
Confidence            999999999999999988 444

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.4e-32  Score=268.10  Aligned_cols=227  Identities=19%  Similarity=0.201  Sum_probs=128.5

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHH
Q 039828           48 QNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLD  127 (626)
Q Consensus        48 ~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~  127 (626)
                      .|..|.||||.|+..|+.+++++|++.|+++            +.++..|.||||+|+.       .++          .
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~------------~~~~~~g~t~L~~A~~-------~~~----------~   55 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYDV------------RQPDKENVTLLHWAAI-------NNR----------I   55 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHH-------TTC----------H
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCCc------------CCCCCCCCCHHHHHHH-------hCC----------H
Confidence            3444445555555555555555555544432            1234445555555554       444          5


Q ss_pred             HHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCC
Q 039828          128 SLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQP  207 (626)
Q Consensus       128 ~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~  207 (626)
                      +++++|++++++.....+..|.||||+|+..|+.+++++|++.+..  ....+..|.||||.|+..|+.+++++|++.+ 
T Consensus        56 ~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-  132 (240)
T 3eu9_A           56 DLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD--PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG-  132 (240)
T ss_dssp             HHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-
T ss_pred             HHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCHHHHHHHHHhcC-
Confidence            5555555555444434444455555555555566666666655442  2233344556666666666666666666655 


Q ss_pred             ccccccCCCCCchhhHHhhCCC-HHHHHHhhhcCCCcccccCC-CCChHHHHHHhcCChHHHHHHHhccCCCCCcccccC
Q 039828          208 ALLLIQDEQMNTPMHWAASVDH-LEGVRFLYEINPDSVLQKNE-EGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNN  285 (626)
Q Consensus       208 ~~~~~~d~~g~tpLh~Aa~~g~-~~~v~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~  285 (626)
                      ..++..|..|.||||+|+..++ .+++++|++.+.+ .+..+. .|.||||+|+..|+.+++++|+++|.+++   .+|.
T Consensus       133 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~  208 (240)
T 3eu9_A          133 QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD---AQNI  208 (240)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT---CBCT
T ss_pred             CCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---CcCC
Confidence            4455566666666666664444 5666666666666 444443 66677777777777777777776654443   3366


Q ss_pred             CCchHHHHHHHcCChHHHHHHHHcC
Q 039828          286 KGQNILHVAAKKGRDVSVTHILEAS  310 (626)
Q Consensus       286 ~g~t~Lh~A~~~~~~~i~~~Ll~~~  310 (626)
                      .|+||||+|+.+++.+++++|++.+
T Consensus       209 ~g~t~l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          209 KGESALDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             TSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhh
Confidence            6677777777777777777776665

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=4.2e-33  Score=279.94  Aligned_cols=235  Identities=15%  Similarity=0.106  Sum_probs=148.9

Q ss_pred             HHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhh
Q 039828           33 MATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAK  112 (626)
Q Consensus        33 ~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~  112 (626)
                      +.++|.+.   .++.+|..|+||||+|+..|+.++|++|++.|++++.            .  +|.||||+|+.      
T Consensus        15 v~~lL~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~--~g~t~L~~A~~------   71 (285)
T 3kea_A           15 LKSFLSSK---DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL------------L--ENEFPLHQAAT------   71 (285)
T ss_dssp             HHHHHHST---TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC------------C--TTCCHHHHHTT------
T ss_pred             HHHHHHhC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC------------C--CCCCHHHHHHH------
Confidence            55555543   3678888888999999998998888888888775421            2  36667766666      


Q ss_pred             ccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHH
Q 039828          113 KDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIE  192 (626)
Q Consensus       113 ~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~  192 (626)
                       .++          .+++++|++++++++ ..|..|.||||+|+..|+.+++++|++++                     
T Consensus        72 -~g~----------~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g---------------------  118 (285)
T 3kea_A           72 -LED----------TKIVKILLFSGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKN---------------------  118 (285)
T ss_dssp             -SSS----------CHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHC---------------------
T ss_pred             -cCC----------HHHHHHHHHCCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcC---------------------
Confidence             666          666666666666655 44555555555555555555555555553                     


Q ss_pred             hCCHHHHHHHHhcCCccccccCCCC-CchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHH
Q 039828          193 LQKLGLLKMMHDKQPALLLIQDEQM-NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL  271 (626)
Q Consensus       193 ~g~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  271 (626)
                                     .+++..|..| .||||+|+..|+.+++++|++++++...  ...|.||||+|+..|+.+++++|+
T Consensus       119 ---------------a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll  181 (285)
T 3kea_A          119 ---------------WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLL  181 (285)
T ss_dssp             ---------------GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---------------CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHHHHHHH
Confidence                           3344555555 5666666666666666666666554211  125666666666666666666666


Q ss_pred             hccCCCCCcccccCCCchH-HHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCc
Q 039828          272 EKENMPHPNELFNNKGQNI-LHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAE  350 (626)
Q Consensus       272 ~~g~~~~~~~~~d~~g~t~-Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d  350 (626)
                      ++|.+++.   +|..|+|| ||+|+.+++.+++++|+++|    ++++.+|       +.|+..|+.+++++|+++| ++
T Consensus       182 ~~gad~n~---~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g----ad~~~~~-------~~a~~~~~~~iv~~Ll~~g-~~  246 (285)
T 3kea_A          182 DYMTSTNT---NNSLLFIPDIKLAIDNKDIEMLQALFKYD----INIYSAN-------LENVLLDDAEIAKMIIEKH-VE  246 (285)
T ss_dssp             HHHHHTCT---TCCCBCCTTHHHHHHHTCHHHHHHHTTSC----BCSTTTT-------GGGGTTTCHHHHHHHHHHH-HH
T ss_pred             HcCCCCCc---ccCCCCChHHHHHHHcCCHHHHHHHHHcC----CCCCCCC-------hhhhhcCCHHHHHHHHHcC-CC
Confidence            66644433   36666665 77777777777777777666    5566555       2455667777777777777 66


Q ss_pred             ccccc
Q 039828          351 SDIIN  355 (626)
Q Consensus       351 ~~~~n  355 (626)
                      ++..+
T Consensus       247 ~~~~~  251 (285)
T 3kea_A          247 YKSDS  251 (285)
T ss_dssp             HTTCT
T ss_pred             CCCcc
Confidence            55433

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.8e-32  Score=264.70  Aligned_cols=212  Identities=19%  Similarity=0.191  Sum_probs=162.6

Q ss_pred             ccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhh
Q 039828           29 ENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNAL  108 (626)
Q Consensus        29 ~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~  108 (626)
                      .+  ++++|++.+++..+..|..|+||||+|+..|+.++|++|+++++++            +..|..|.||||+|+.  
T Consensus         4 ~~--~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~--   67 (223)
T 2f8y_A            4 PA--VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA------------NIQDNMGRTPLHAAVS--   67 (223)
T ss_dssp             -C--CEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHH--
T ss_pred             HH--HHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHH--
Confidence            67  8889999988755666899999999999999999999999988765            3467888888888888  


Q ss_pred             hhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHH
Q 039828          109 QDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVK  188 (626)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~  188 (626)
                           .++          .+++++|+++++......+..|.||||+|+..|+.+++++|++.+..  ....+..|.||||
T Consensus        68 -----~~~----------~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~L~  130 (223)
T 2f8y_A           68 -----ADA----------QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD--VNAVDDLGKSALH  130 (223)
T ss_dssp             -----TTC----------HHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--TTCBCTTSCBHHH
T ss_pred             -----cCC----------HHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC--CcCcCCCCCcHHH
Confidence                 888          88888888887744446778888888888888888888888887663  3344456777777


Q ss_pred             HHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHH
Q 039828          189 VAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMG  268 (626)
Q Consensus       189 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~  268 (626)
                      .|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++++++ .+..|..|.||+|+|+..|+.++++
T Consensus       131 ~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~  208 (223)
T 2f8y_A          131 WAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVR  208 (223)
T ss_dssp             HHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcC-CCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHH
Confidence            777777777777777775 56666777777777777777777777777777766 5666777777777777777777777


Q ss_pred             HHHhccC
Q 039828          269 EFLEKEN  275 (626)
Q Consensus       269 ~Ll~~g~  275 (626)
                      +|+++|.
T Consensus       209 ~L~~~g~  215 (223)
T 2f8y_A          209 LLDEYNL  215 (223)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            7777654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.1e-32  Score=277.03  Aligned_cols=226  Identities=18%  Similarity=0.115  Sum_probs=196.4

Q ss_pred             HHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcC
Q 039828          127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQ  206 (626)
Q Consensus       127 ~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  206 (626)
                      .++.++|.+.+.  + ..|.+|.||||+|+..|+.+++++|++.+...+.  .  +|.||||.|+..|+.+++++|++.+
T Consensus        13 ~~v~~lL~~~~~--~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~--~g~t~L~~A~~~g~~~~v~~Ll~~g   85 (285)
T 3kea_A           13 KQLKSFLSSKDT--F-KADVHGHSASYYAIADNNVRLVCTLLNAGALKNL--L--ENEFPLHQAATLEDTKIVKILLFSG   85 (285)
T ss_dssp             HHHHHHHHSTTT--T-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC--C--TTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred             HHHHHHHHhCCC--C-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--C--CCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            677777777643  3 6789999999999999999999999998764322  2  4899999999999999999999998


Q ss_pred             CccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCC-ChHHHHHHhcCChHHHHHHHhccCCCCCcccccC
Q 039828          207 PALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEG-LYPFHLASANGCVPVMGEFLEKENMPHPNELFNN  285 (626)
Q Consensus       207 ~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~  285 (626)
                       .+++..|..|.||||+|+..|+.+++++|++++++ ++..+..| .||||+|+..|+.+++++|+++|.....    ..
T Consensus        86 -a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----~~  159 (285)
T 3kea_A           86 -LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD----LA  159 (285)
T ss_dssp             -CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC----CS
T ss_pred             -CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc----cc
Confidence             77888999999999999999999999999999988 88889999 8999999999999999999997654421    22


Q ss_pred             CCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCH-HHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHH
Q 039828          286 KGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTP-LHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDI  364 (626)
Q Consensus       286 ~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~Tp-LhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~l  364 (626)
                      .|+||||+|+.+|+.+++++|++.|    +++|.+|..|+|| ||+|+..++.+++++|+++| ++++.+|..       
T Consensus       160 ~g~t~L~~A~~~g~~~~v~~Ll~~g----ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~~-------  227 (285)
T 3kea_A          160 ILLSCIHITIKNGHVDMMILLLDYM----TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD-INIYSANLE-------  227 (285)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHH----HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC-BCSTTTTGG-------
T ss_pred             CCccHHHHHHHcChHHHHHHHHHcC----CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCChh-------
Confidence            8999999999999999999999998    8999999999998 99999999999999999999 999998852       


Q ss_pred             HHHhccccccccc
Q 039828          365 AEQQYAKIIPEFS  377 (626)
Q Consensus       365 a~~~~~~~i~~~~  377 (626)
                      +...++.++++++
T Consensus       228 a~~~~~~~iv~~L  240 (285)
T 3kea_A          228 NVLLDDAEIAKMI  240 (285)
T ss_dssp             GGTTTCHHHHHHH
T ss_pred             hhhcCCHHHHHHH
Confidence            2334455555543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=4.2e-34  Score=293.09  Aligned_cols=294  Identities=13%  Similarity=0.090  Sum_probs=175.2

Q ss_pred             CCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHH-
Q 039828           11 PSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFL-   89 (626)
Q Consensus        11 ~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~-   89 (626)
                      ..+.+|+|    ...   .+  ++++|++++.+ ++.+|..|.|++|     |+.++|+.|+++|.++........-.- 
T Consensus        21 ~~~~~~~~----~~~---~d--lv~~ll~~ga~-i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~   85 (327)
T 1sw6_A           21 DRTAGPII----TFT---HD--LTSDFLSSPLK-IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNND   85 (327)
T ss_dssp             ----CCEE----ECC---TT--CCCSTTTSSCC-CEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------
T ss_pred             cccccchh----hhc---Cc--hHHHHhhCCcc-cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcc
Confidence            34455565    334   56  89999999876 8899999999998     999999999999976522100000000 


Q ss_pred             -HHh---hccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHH
Q 039828           90 -MEM---KNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILE  165 (626)
Q Consensus        90 -l~~---~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  165 (626)
                       ...   +.....+.+|.|+.       ...          .++++.|++.+.+++...|.+|+||||+|+..|+.++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~a~~-------~~~----------~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~  148 (327)
T 1sw6_A           86 SSNRNSEGGSSNQQQQHVSFD-------SLL----------QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVK  148 (327)
T ss_dssp             ------------------CHH-------HHH----------HHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHH
T ss_pred             cccccccccCCccchhHHHHH-------hhH----------HHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHH
Confidence             000   00001112244443       333          666777777777766336777777777777777777777


Q ss_pred             HHHHhCCCCCccccccCCCCHHHHHHHhCC---HHHHHHHHhcCCccccccCCCCCchhhHHhh----CCCHHHHHHhhh
Q 039828          166 YILEALPVNDDCDAKLEGKSPVKVAIELQK---LGLLKMMHDKQPALLLIQDEQMNTPMHWAAS----VDHLEGVRFLYE  238 (626)
Q Consensus       166 ~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~----~g~~~~v~~Ll~  238 (626)
                      +|+++++.  ....+..|.||||+|+..|+   .++++.|++.+...++.+|..|.||||+|+.    .|+.+++++|++
T Consensus       149 ~Ll~~Gad--~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~  226 (327)
T 1sw6_A          149 HLVKHGSN--RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD  226 (327)
T ss_dssp             HHHHTTCC--TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHcCCC--CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHH
Confidence            77777653  33445566777777777666   5566666665545566666666666666666    666666666666


Q ss_pred             cCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcc
Q 039828          239 INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLIN  318 (626)
Q Consensus       239 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in  318 (626)
                      .+.......              +...+...+...|.++   +.++..|+||||.|+.      +++|++.+      +|
T Consensus       227 ~~~~~~~~~--------------~~~~i~~~~~~~g~~~---~~~~~~g~t~L~~a~~------~~~Ll~~~------~n  277 (327)
T 1sw6_A          227 ILMGWIVKK--------------QNRPIQSGTNEKESKP---NDKNGERKDSILENLD------LKWIIANM------LN  277 (327)
T ss_dssp             HHHHHHHHG--------------GGCCEEEC-------------------CHHHHHCS------HHHHHHHT------TT
T ss_pred             HHHHHHhcc--------------cchHHHhhhhcccCCc---ccccccCCChhHHHHH------HHHHHHhC------CC
Confidence            532210000              0000000011113333   3457888899998885      78888763      78


Q ss_pred             cCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHh
Q 039828          319 EMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ  368 (626)
Q Consensus       319 ~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~  368 (626)
                      .+|..|+||||+|+..|+.+++++|+++| ++++.+|.+|+||||+|++.
T Consensus       278 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          278 AQDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC-
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhc
Confidence            88899999999999999999999999988 99999999999999988754

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=7e-34  Score=291.45  Aligned_cols=259  Identities=13%  Similarity=0.078  Sum_probs=180.4

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHH
Q 039828           49 NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDS  128 (626)
Q Consensus        49 d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~  128 (626)
                      +..+.+|+|.    ...++|++|+++|+++            +..+..|.|+++            |+          .+
T Consensus        20 ~~~~~~~~~~----~~~dlv~~ll~~ga~i------------~~~~~~g~~~~~------------g~----------~~   61 (327)
T 1sw6_A           20 NDRTAGPIIT----FTHDLTSDFLSSPLKI------------MKALPSPVVNDN------------EQ----------KM   61 (327)
T ss_dssp             -----CCEEE----CCTTCCCSTTTSSCCC------------EECBCCCCCCCH------------HH----------HH
T ss_pred             ccccccchhh----hcCchHHHHhhCCccc------------ccCCCCCCcccC------------ch----------hH
Confidence            4556677773    5668899999999876            347889999976            34          89


Q ss_pred             HHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCc
Q 039828          129 LARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPA  208 (626)
Q Consensus       129 i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  208 (626)
                      +++.|++++.+..       .++++.|+.....          +  ..........+..|.|+..+..++++.|++.+ .
T Consensus        62 ~v~~Ll~~g~~~~-------~~~~~~a~~~~~~----------~--~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g-~  121 (327)
T 1sw6_A           62 KLEAFLQRLLFPE-------IQEMPTSLNNDSS----------N--RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ-L  121 (327)
T ss_dssp             HHHHHHHHHHC--------------------------------------------------CHHHHHHHHHHHCTTSC-C
T ss_pred             HHHHHHHhccCCc-------cccchHhhhcccc----------c--ccccccCCccchhHHHHHhhHHHHHHHHHhcC-C
Confidence            9999999987643       3567766653210          0  00111122345568888888888999988887 7


Q ss_pred             cccc-cCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCC---hHHHHHHHhccCCCCCccccc
Q 039828          209 LLLI-QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGC---VPVMGEFLEKENMPHPNELFN  284 (626)
Q Consensus       209 ~~~~-~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~~v~~Ll~~g~~~~~~~~~d  284 (626)
                      +++. +|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+   .++++.|++.+.  ...+.+|
T Consensus       122 dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~--~~~~~~d  198 (327)
T 1sw6_A          122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY--PCLILED  198 (327)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG--GGGGEEC
T ss_pred             CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhh--ccccCCC
Confidence            7888 899999999999999999999999999988 78899999999999999998   788888887542  3456679


Q ss_pred             CCCchHHHHHHH----cCChHHHHHHHHcCC----------------cchhhcccCCCCCCCHHHHHHHhCCHHHHHHHh
Q 039828          285 NKGQNILHVAAK----KGRDVSVTHILEASD----------------LTDKLINEMDDDGNTPLHLAALYGHYFVAVILG  344 (626)
Q Consensus       285 ~~g~t~Lh~A~~----~~~~~i~~~Ll~~~~----------------~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll  344 (626)
                      ..|+||||+|+.    .|+.+++++|++.+.                ...++++.+|..|.||||.|+.      +++|+
T Consensus       199 ~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll  272 (327)
T 1sw6_A          199 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWII  272 (327)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHH
T ss_pred             CCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHH
Confidence            999999999999    899999999998731                0148899999999999999995      88888


Q ss_pred             hCCCCcccccccCCCCHHHHHHHhccccccccc
Q 039828          345 KDGRAESDIINFYGQTAYDIAEQQYAKIIPEFS  377 (626)
Q Consensus       345 ~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~~  377 (626)
                      +.   +++.+|..|+||||+|+..++.++++++
T Consensus       273 ~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~L  302 (327)
T 1sw6_A          273 AN---MLNAQDSNGDTCLNIAARLGNISIVDAL  302 (327)
T ss_dssp             HH---TTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             Hh---CCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            87   5889999999999999999999988875

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=9e-33  Score=269.53  Aligned_cols=217  Identities=18%  Similarity=0.169  Sum_probs=188.4

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCC--CccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCch
Q 039828          143 LMNVDCKSPLYLAVESKNEDILEYILEALPVN--DDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTP  220 (626)
Q Consensus       143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp  220 (626)
                      ..|.+|.||||+|+..|+.+++++|++.+...  +....+..|.||||+|+..|+.+++++|++.+ .+++.+|..|.||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG-CDPELRDFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC-CCSCCCCTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCH
Confidence            46889999999999999999999999876532  34556678999999999999999999999998 7788899999999


Q ss_pred             hhHHhhCCCHHHHHHhhhcCCCc-----ccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccC-CCchHHHHH
Q 039828          221 MHWAASVDHLEGVRFLYEINPDS-----VLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNN-KGQNILHVA  294 (626)
Q Consensus       221 Lh~Aa~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~-~g~t~Lh~A  294 (626)
                      ||+|+..|+.+++++|++.+++.     .+..+..|.||||+|+..|+.+++++|+++|.+++..   +. .|+||||+|
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~---~~~~g~tpL~~A  158 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ---EPCNGRTALHLA  158 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC---CTTTCCCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC---CCCCCCCHHHHH
Confidence            99999999999999999998642     5678889999999999999999999999988666544   65 899999999


Q ss_pred             HHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccc--ccccCCCCHHHHHHHh
Q 039828          295 AKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD--IINFYGQTAYDIAEQQ  368 (626)
Q Consensus       295 ~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~--~~n~~g~tpl~la~~~  368 (626)
                      +..|+.+++++|++.|    ++++.+|..|+||||+|+..++.+++++|+++| ++..  ..+..|.||.+.+.+.
T Consensus       159 ~~~~~~~~v~~Ll~~g----a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          159 VDLQNPDLVSLLLKCG----ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT-LENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             HHTTCHHHHHHHHTTT----CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS-CGGGSSCCCCCTTTCCCCC---
T ss_pred             HHcCCHHHHHHHHHcC----CCCCcccCCCCCHHHHHHccCchHHHHHHHHcc-hhhhhcCCccchHHHHhhhccc
Confidence            9999999999999998    889999999999999999999999999999999 7765  8899999998876654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=9.4e-32  Score=262.31  Aligned_cols=216  Identities=18%  Similarity=0.184  Sum_probs=161.9

Q ss_pred             ccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcc---cccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccc
Q 039828            7 TITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPF---LITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQ   83 (626)
Q Consensus         7 ~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~---~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~   83 (626)
                      +.+|.+|+||||+|+..|+   .+  ++++|++.++.   +++.+|..|+||||+|+..|+.++|++|+++|++++    
T Consensus         2 ~~~d~~g~t~L~~A~~~g~---~~--~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----   72 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEE---KA--LTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE----   72 (236)
T ss_dssp             -----CCCCTTHHHHHTTC---SS--SSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC----
T ss_pred             CcCCCCCCchhHHHHHcCC---hh--HHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----
Confidence            5678899999999999999   88  88888887653   478888999999999999999999999999887653    


Q ss_pred             hhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCc-----ccccCCCCCcHHHHHHHc
Q 039828           84 IDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNA-----SYLMNVDCKSPLYLAVES  158 (626)
Q Consensus        84 ~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~~  158 (626)
                              .+|..|.||||+|+.       .++          .+++++|++.+.+.     ....+..|.||||+|+..
T Consensus        73 --------~~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  127 (236)
T 1ikn_D           73 --------LRDFRGNTPLHLACE-------QGC----------LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH  127 (236)
T ss_dssp             --------CCCTTCCCHHHHHHH-------HTC----------HHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHT
T ss_pred             --------CcCCCCCCHHHHHHH-------cCC----------HHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHc
Confidence                    367888899999988       888          88888888887642     235677788888888888


Q ss_pred             CCHHHHHHHHHhCCCCCcccccc-CCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhh
Q 039828          159 KNEDILEYILEALPVNDDCDAKL-EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY  237 (626)
Q Consensus       159 g~~~~v~~Ll~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll  237 (626)
                      |+.+++++|++.+..  ....+. .|.||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|+
T Consensus       128 ~~~~~v~~Ll~~g~~--~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll  204 (236)
T 1ikn_D          128 GYLGIVELLVSLGAD--VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLG  204 (236)
T ss_dssp             TCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCHHHHHHccCchHHHHHHH
Confidence            888888888888763  333343 6788888888888888888888776 667777788888888888888888888888


Q ss_pred             hcCCCcc-cccCCCCChHHHHHH
Q 039828          238 EINPDSV-LQKNEEGLYPFHLAS  259 (626)
Q Consensus       238 ~~~~~~~-~~~d~~g~tpLh~A~  259 (626)
                      +++++.. ...+..|.||...+.
T Consensus       205 ~~ga~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          205 QLTLENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             TTSCGGGSSCCCCCTTTCCCCC-
T ss_pred             HcchhhhhcCCccchHHHHhhhc
Confidence            8877633 355666666655443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1.4e-29  Score=240.15  Aligned_cols=195  Identities=17%  Similarity=0.208  Sum_probs=165.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHH
Q 039828          145 NVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWA  224 (626)
Q Consensus       145 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  224 (626)
                      +..+.||||.|+..|+.+.++.|++.++. +....+..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A   79 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTY-QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG-ADINLQNSISDSPYLYA   79 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHH
Confidence            35678999999999999999999987652 23445567899999999999999999999987 67888889999999999


Q ss_pred             hhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCC-----
Q 039828          225 ASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGR-----  299 (626)
Q Consensus       225 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~-----  299 (626)
                      +..|+.+++++|++.+....+..|..|.||||.|+..|+.+++++|+++|  +...+.+|..|+||||+|+..++     
T Consensus        80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~~~~~~~~  157 (201)
T 3hra_A           80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG--REDIDFQNDFGYTALIEAVGLREGNQLY  157 (201)
T ss_dssp             HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC--CCCTTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred             HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcCCCCCCCCCHHHHHHHhccchhhH
Confidence            99999999999996666558888889999999999999999999999866  23344558889999999998887     


Q ss_pred             hHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828          300 DVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG  347 (626)
Q Consensus       300 ~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g  347 (626)
                      .+++++|++.|    ++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       158 ~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          158 QDIVKLLMENG----ADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHHHHCC----CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            88999999988    788889999999999999999999999998875

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1e-29  Score=241.15  Aligned_cols=189  Identities=23%  Similarity=0.203  Sum_probs=174.9

Q ss_pred             cCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHh
Q 039828          181 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASA  260 (626)
Q Consensus       181 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  260 (626)
                      ..+.||||.|+..|+.+.++.|++.++.+++..|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence            36899999999999999999999999878999999999999999999999999999999988 88899999999999999


Q ss_pred             cCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCC----
Q 039828          261 NGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGH----  336 (626)
Q Consensus       261 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~----  336 (626)
                      .|+.+++++|++.+  ....+..|..|+||||+|+.+++.+++++|++.+   ..+++.+|..|+||||+|+..++    
T Consensus        82 ~~~~~~~~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~~g~t~L~~A~~~~~~~~~  156 (201)
T 3hra_A           82 QGRTEILAYMLKHA--TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG---REDIDFQNDFGYTALIEAVGLREGNQL  156 (201)
T ss_dssp             TTCHHHHHHHHHHS--CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC---CCCTTCCCTTSCCHHHHHHHSSCCSHH
T ss_pred             cCCHHHHHHHHhcc--CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCcCCCCCCCCCHHHHHHHhccchhh
Confidence            99999999999643  3344566899999999999999999999999997   36789999999999999999998    


Q ss_pred             -HHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccccc
Q 039828          337 -YFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF  376 (626)
Q Consensus       337 -~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~  376 (626)
                       .+++++|++.| ++++.+|..|+||+|+|...++.+++++
T Consensus       157 ~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~  196 (201)
T 3hra_A          157 YQDIVKLLMENG-ADQSIKDNSGRTAMDYANQKGYTEISKI  196 (201)
T ss_dssp             HHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHH
Confidence             99999999999 9999999999999999999988877765

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=6.9e-30  Score=254.90  Aligned_cols=220  Identities=21%  Similarity=0.205  Sum_probs=137.7

Q ss_pred             ccccccCCCCcHHHHHHhcCCCccccHHHHHHHHhh----Cccccc----ccccCCCcHHHHHHHc---CCHHHHHHHHH
Q 039828            5 FKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARK----YPFLIT----MQNSKGDTPLHVAARD---GMLQTAKILVD   73 (626)
Q Consensus         5 ~~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~----~~~~l~----~~d~~G~TpLh~Aa~~---g~~~iv~~Ll~   73 (626)
                      ..+..|..|+|+||+||..|+   .+  +++.|++.    +.. ++    ..|..|+||||+||..   |+.++|++|++
T Consensus         5 ~~~~~d~~g~t~L~~A~~~g~---~~--~v~~Ll~~~~~~~~~-~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~   78 (273)
T 2pnn_A            5 GEKPPRLYDRRSIFDAVAQSN---CQ--ELESLLPFLQRSKKR-LTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLD   78 (273)
T ss_dssp             ------CCCHHHHHHHHHTTC---SS--TTTTHHHHHHHSCCC-TTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHH
T ss_pred             cCCCCCcccchHHHHHHHcCC---HH--HHHHHHHHHhhcccc-cCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHH
Confidence            346688999999999999999   88  88888874    322 33    4588999999999987   99999999999


Q ss_pred             ccccCCCccchhhhHHHHh----hccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCC
Q 039828           74 CAKRMTSSSQIDVKFLMEM----KNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCK  149 (626)
Q Consensus        74 ~~~~~~~~~~~~~~~~l~~----~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~  149 (626)
                      .|++...     .+..++.    .|..|.||||+|+.       .++          .+++++|++++++++ ..+..+.
T Consensus        79 ~ga~~~~-----~~~~i~~~~~~~d~~g~tpL~~A~~-------~g~----------~~~v~~Ll~~ga~~~-~~~~~~~  135 (273)
T 2pnn_A           79 VARKTDS-----LKQFVNASYTDSYYKGQTALHIAIE-------RRN----------MTLVTLLVENGADVQ-AAANGDF  135 (273)
T ss_dssp             HHHHTTC-----HHHHHTCCCCSTTTTTCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCBCSGG
T ss_pred             hhccccc-----hhHHhhcccccccCCCCCHHHHHHH-------cCC----------HHHHHHHHHCCCCcC-ccccccc
Confidence            9876422     2222333    56799999999999       999          999999999999987 4444210


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh---cCCccccccCCCCCchhhHHhh
Q 039828          150 SPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHD---KQPALLLIQDEQMNTPMHWAAS  226 (626)
Q Consensus       150 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~tpLh~Aa~  226 (626)
                                        ..   ..+....+..|.||||+|+..|+.+++++|++   .+ .+++.+|..|+||||+|+.
T Consensus       136 ------------------~~---~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-ad~~~~d~~g~tpLh~A~~  193 (273)
T 2pnn_A          136 ------------------FK---KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP-ADISARDSVGNTVLHALVE  193 (273)
T ss_dssp             ------------------GS---SCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHH
T ss_pred             ------------------cc---cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCC-CCceeeCCCCCcHHHHHHH
Confidence                              00   00111122234455555555555555555554   33 4444555555555555555


Q ss_pred             CCC---------HHHHHHhhhcCCCcc------cccCCCCChHHHHHHhcCChHHHHHHHhccC
Q 039828          227 VDH---------LEGVRFLYEINPDSV------LQKNEEGLYPFHLASANGCVPVMGEFLEKEN  275 (626)
Q Consensus       227 ~g~---------~~~v~~Ll~~~~~~~------~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~  275 (626)
                      .|+         .+++++|++.+++..      +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       194 ~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          194 VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence            544         455555555554411      1355555555555555555555555555554

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=3.1e-30  Score=257.44  Aligned_cols=213  Identities=19%  Similarity=0.145  Sum_probs=168.5

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhC----CCCCc--cccccCCCCHHHHHHHh---CCHHHHHHHHhcCCcc----
Q 039828          143 LMNVDCKSPLYLAVESKNEDILEYILEAL----PVNDD--CDAKLEGKSPVKVAIEL---QKLGLLKMMHDKQPAL----  209 (626)
Q Consensus       143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~----~~~~~--~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~----  209 (626)
                      ..|..|.||||.|+..|+.++++.|++.+    .....  ...+..|.||||+|+..   |+.+++++|++.+...    
T Consensus         8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~   87 (273)
T 2pnn_A            8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK   87 (273)
T ss_dssp             ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred             CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence            46889999999999999999999998743    21111  12466899999999987   9999999999986221    


Q ss_pred             --cc----ccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCC--------------CCChHHHHHHhcCChHHHHH
Q 039828          210 --LL----IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNE--------------EGLYPFHLASANGCVPVMGE  269 (626)
Q Consensus       210 --~~----~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~tpLh~A~~~g~~~~v~~  269 (626)
                        ++    ..|..|.||||+|+..|+.+++++|++.+++ ++..+.              .|.||||+|+..|+.+++++
T Consensus        88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  166 (273)
T 2pnn_A           88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF  166 (273)
T ss_dssp             HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred             HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence              22    2567899999999999999999999999988 666665              79999999999999999999


Q ss_pred             HHh---ccCCCCCcccccCCCchHHHHHHHcCC---------hHHHHHHHHcCCcchhhcc-------cCCCCCCCHHHH
Q 039828          270 FLE---KENMPHPNELFNNKGQNILHVAAKKGR---------DVSVTHILEASDLTDKLIN-------EMDDDGNTPLHL  330 (626)
Q Consensus       270 Ll~---~g~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~i~~~Ll~~~~~~~~~in-------~~d~~G~TpLhl  330 (626)
                      |++   +|.+++   .+|..|+||||+|+..++         .+++++|++.|    +++|       .+|..|+||||+
T Consensus       167 Ll~~~~~gad~~---~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g----a~~n~~~~~~~~~d~~g~TpL~~  239 (273)
T 2pnn_A          167 LLQNSWQPADIS---ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG----AKLHPTLKLEEITNRKGLTPLAL  239 (273)
T ss_dssp             HHHCSSCCCCTT---CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH----HHHCTTCCGGGCCCTTSCCHHHH
T ss_pred             HHhcccCCCCce---eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh----hhcccccccccccCCCCCCHHHH
Confidence            999   665554   558999999999999998         79999999998    7775       589999999999


Q ss_pred             HHHhCCHHHHHHHhhCCCCcccccccCCCCHHH
Q 039828          331 AALYGHYFVAVILGKDGRAESDIINFYGQTAYD  363 (626)
Q Consensus       331 A~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~  363 (626)
                      |+..|+.+++++|+++|..|+......+.+|-+
T Consensus       240 A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          240 AASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence            999999999999999994488888777776643

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=4.2e-29  Score=229.48  Aligned_cols=159  Identities=29%  Similarity=0.334  Sum_probs=141.6

Q ss_pred             CHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCCh
Q 039828          185 SPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCV  264 (626)
Q Consensus       185 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  264 (626)
                      ++|+.|+..|+.++++.|++.+ .+++.+|..|.||||+|+..++.+++++|++.+++ ++.+|.+|.||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~G-advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHcCCH
Confidence            3688899999999999999988 77889999999999999999999999999999988 888999999999999999999


Q ss_pred             HHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHh
Q 039828          265 PVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILG  344 (626)
Q Consensus       265 ~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll  344 (626)
                      +++++|+++|.+++   .+|.+|+||||+|+.+|+.+++++|++.|    ++++.+|.+|+||||+|+..|+.+++++|+
T Consensus        84 ~~v~~Ll~~gadvn---~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g----ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  156 (169)
T 4gpm_A           84 EVVKLLISKGADVN---AKDSDGRTPLHHAAENGHKEVVKLLISKG----ADVNTSDSDGRTPLDLAREHGNEEVVKLLE  156 (169)
T ss_dssp             HHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHCcCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999886654   45889999999999999999999999998    889999999999999999999999999999


Q ss_pred             hCCCCcccc
Q 039828          345 KDGRAESDI  353 (626)
Q Consensus       345 ~~g~~d~~~  353 (626)
                      ++| ++++.
T Consensus       157 ~~G-A~ie~  164 (169)
T 4gpm_A          157 KQG-GWLEH  164 (169)
T ss_dssp             TC-------
T ss_pred             HCC-CCcCC
Confidence            999 88764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=2.1e-29  Score=248.86  Aligned_cols=192  Identities=19%  Similarity=0.145  Sum_probs=161.7

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHhCCCCCc--cccccCCCCHHHHHHHh---CCHHHHHHHHhcCCcccc------
Q 039828          147 DCKSPLYLAVESKNED----ILEYILEALPVNDD--CDAKLEGKSPVKVAIEL---QKLGLLKMMHDKQPALLL------  211 (626)
Q Consensus       147 ~g~tpL~~A~~~g~~~----~v~~Ll~~~~~~~~--~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~------  211 (626)
                      .|+||||.|+..|+.+    ++++|++.+...+.  ...+..|.||||+|+..   |+.+++++|++.+ ...+      
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g-~~~~~~~~~~   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID-KDSGNPKPLV   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH-HHTTCSSCGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC-Ccccchhhhc
Confidence            4789999999999997    66777777763322  01567899999999999   9999999999987 3332      


Q ss_pred             -----ccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCC-------------CChHHHHHHhcCChHHHHHHHh-
Q 039828          212 -----IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEE-------------GLYPFHLASANGCVPVMGEFLE-  272 (626)
Q Consensus       212 -----~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-------------g~tpLh~A~~~g~~~~v~~Ll~-  272 (626)
                           ..|..|.||||+|+..|+.+++++|++.+++ ++..+..             |.||||+|+..|+.+++++|++ 
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  158 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN  158 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                 2346799999999999999999999999888 6666665             9999999999999999999999 


Q ss_pred             --ccCCCCCcccccCCCchHHHHHHH--cCChH-------HHHHHHHcCCcchhhc-------ccCCCCCCCHHHHHHHh
Q 039828          273 --KENMPHPNELFNNKGQNILHVAAK--KGRDV-------SVTHILEASDLTDKLI-------NEMDDDGNTPLHLAALY  334 (626)
Q Consensus       273 --~g~~~~~~~~~d~~g~t~Lh~A~~--~~~~~-------i~~~Ll~~~~~~~~~i-------n~~d~~G~TpLhlA~~~  334 (626)
                        +|.+++   .+|..|+||||+|+.  +++.+       ++++|++.|    +++       +.+|..|+||||+|+..
T Consensus       159 ~~~ga~~n---~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g----a~~~~~~~~~~~~d~~g~tpL~~A~~~  231 (256)
T 2etb_A          159 PHQPASLE---ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG----ARLCPTVQLEEISNHQGLTPLKLAAKE  231 (256)
T ss_dssp             SSCCCCTT---CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH----HHHSTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             cccCCCcC---ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC----CCcccccccccccCCCCCCHHHHHHHh
Confidence              665544   458899999999998  77887       999999997    777       88999999999999999


Q ss_pred             CCHHHHHHHhhCC
Q 039828          335 GHYFVAVILGKDG  347 (626)
Q Consensus       335 ~~~~iv~~Ll~~g  347 (626)
                      |+.+++++|+++|
T Consensus       232 g~~~~v~~Ll~~g  244 (256)
T 2etb_A          232 GKIEIFRHILQRE  244 (256)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhCC
Confidence            9999999999887

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=5.2e-29  Score=246.00  Aligned_cols=216  Identities=19%  Similarity=0.198  Sum_probs=147.4

Q ss_pred             CCCcHHHHHHhcCCCccccH--HHHHHHHhhCcccccc----cccCCCcHHHHHHHc---CCHHHHHHHHHccccCCCcc
Q 039828           12 SGNTLLHIAAAGSIRNHENM--AMATTLARKYPFLITM----QNSKGDTPLHVAARD---GMLQTAKILVDCAKRMTSSS   82 (626)
Q Consensus        12 ~g~t~LH~Aa~~g~~~~~~~--~~v~~Ll~~~~~~l~~----~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~   82 (626)
                      .|+||||+||..|+   .+.  .+++++++.+.+ ++.    +|..|+||||+|+..   |+.++|++|++.|+++....
T Consensus         1 ~G~t~L~~A~~~g~---~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~   76 (256)
T 2etb_A            1 FDRDRLFSVVSRGV---PEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPK   76 (256)
T ss_dssp             CCHHHHHHHHHHTC---GGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSS
T ss_pred             CCccHHHHHHHcCC---HHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchh
Confidence            38999999999999   641  156777777765 776    899999999999999   99999999999998763211


Q ss_pred             chhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHH
Q 039828           83 QIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNED  162 (626)
Q Consensus        83 ~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~  162 (626)
                      . ........+|..|.||||+|+.       .++          .+++++|++++++++ ..+..+.++           
T Consensus        77 ~-~~~~~~~~~d~~g~t~L~~A~~-------~g~----------~~~v~~Ll~~ga~~~-~~~~~~~~~-----------  126 (256)
T 2etb_A           77 P-LVNAQCTDEFYQGHSALHIAIE-------KRS----------LQCVKLLVENGADVH-LRACGRFFQ-----------  126 (256)
T ss_dssp             C-GGGCCCCSTTTTTCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCCCSGGGS-----------
T ss_pred             h-hcccccccccccCCCHHHHHHH-------cCC----------HHHHHHHHHcCCCCC-ccccccccc-----------
Confidence            0 0011112245789999999999       999          999999999999987 444442110           


Q ss_pred             HHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh---cCCccccccCCCCCchhhHHhh--CCCHH------
Q 039828          163 ILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHD---KQPALLLIQDEQMNTPMHWAAS--VDHLE------  231 (626)
Q Consensus       163 ~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~tpLh~Aa~--~g~~~------  231 (626)
                                 .+....+..|.||||.|+..|+.+++++|++   .+ .+++.+|..|+||||+|+.  .++.+      
T Consensus       127 -----------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g-a~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~  194 (256)
T 2etb_A          127 -----------KHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP-ASLEATDSLGNTVLHALVMIADNSPENSALVI  194 (256)
T ss_dssp             -----------CCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred             -----------ccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-CCcCccCCCCCCHHHHHHHcccCCchhhHHHH
Confidence                       0111222235566666666666666666665   33 5556666666666666666  55655      


Q ss_pred             -HHHHhhhcCCCcc-------cccCCCCChHHHHHHhcCChHHHHHHHhcc
Q 039828          232 -GVRFLYEINPDSV-------LQKNEEGLYPFHLASANGCVPVMGEFLEKE  274 (626)
Q Consensus       232 -~v~~Ll~~~~~~~-------~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  274 (626)
                       ++++|++.+++ +       +.+|..|.||||+|+..|+.+++++|+++|
T Consensus       195 ~iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          195 HMYDGLLQMGAR-LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             HHHHHHHHHHHH-HSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCC-cccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence             66666666665 3       566666777777777777777777776655

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=2e-28  Score=242.34  Aligned_cols=195  Identities=19%  Similarity=0.156  Sum_probs=164.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHH----HHhCCCCCccc--cccCCCCHHHHHH---HhCCHHHHHHHHhcCC--------
Q 039828          145 NVDCKSPLYLAVESKNEDILEYI----LEALPVNDDCD--AKLEGKSPVKVAI---ELQKLGLLKMMHDKQP--------  207 (626)
Q Consensus       145 ~~~g~tpL~~A~~~g~~~~v~~L----l~~~~~~~~~~--~~~~g~t~L~~A~---~~g~~~~v~~Ll~~~~--------  207 (626)
                      +..++++||.|+..|+.+.++.|    ++.+.......  .+..|.||||.|+   ..|+.+++++|++.+.        
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            56789999999999999955544    44776444332  2367999999999   6799999999999762        


Q ss_pred             --ccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccC--------------CCCChHHHHHHhcCChHHHHHHH
Q 039828          208 --ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKN--------------EEGLYPFHLASANGCVPVMGEFL  271 (626)
Q Consensus       208 --~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~~v~~Ll  271 (626)
                        ...+..|..|.||||+|+..|+.+++++|++.+++ ++..+              ..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence              22344556899999999999999999999999988 66676              58999999999999999999999


Q ss_pred             h---ccCCCCCcccccCCCchHHHHHHHcCC---------hHHHHHHHHcCCcchhhc-------ccCCCCCCCHHHHHH
Q 039828          272 E---KENMPHPNELFNNKGQNILHVAAKKGR---------DVSVTHILEASDLTDKLI-------NEMDDDGNTPLHLAA  332 (626)
Q Consensus       272 ~---~g~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~i~~~Ll~~~~~~~~~i-------n~~d~~G~TpLhlA~  332 (626)
                      +   +|.++   +.+|..|+||||+|+..++         .+++++|++.|    +++       +.+|..|+||||+|+
T Consensus       161 ~~~~~ga~~---~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g----a~~~~~~~~~~~~d~~g~tpL~~A~  233 (260)
T 3jxi_A          161 ENGHKQADL---RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC----AKLFPDTNLEALLNNDGLSPLMMAA  233 (260)
T ss_dssp             HCSSCCCCT---TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH----HHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             hccccCCCC---cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC----cccccccchhhcccCCCCCHHHHHH
Confidence            9   66554   4568999999999998887         68999999998    666       779999999999999


Q ss_pred             HhCCHHHHHHHhhCC
Q 039828          333 LYGHYFVAVILGKDG  347 (626)
Q Consensus       333 ~~~~~~iv~~Ll~~g  347 (626)
                      ..|+.+++++|+++|
T Consensus       234 ~~g~~~~v~~Ll~~g  248 (260)
T 3jxi_A          234 KTGKIGIFQHIIRRE  248 (260)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHhC
Confidence            999999999999988

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=5.6e-28  Score=221.97  Aligned_cols=149  Identities=28%  Similarity=0.352  Sum_probs=141.1

Q ss_pred             chhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcC
Q 039828          219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKG  298 (626)
Q Consensus       219 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~  298 (626)
                      ++|+.|++.|+.++|+.|++.|++ ++.+|.+|.||||+|+..++.++++.|+++|.+++   .+|..|+||||+|+.+|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~---~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN---AKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh---hhccCCCCHHHHHHHcC
Confidence            579999999999999999999998 88999999999999999999999999999886654   45899999999999999


Q ss_pred             ChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccccc
Q 039828          299 RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF  376 (626)
Q Consensus       299 ~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~  376 (626)
                      +.+++++|++.|    +++|.+|.+|+||||+|+..|+.+++++|++.| ++++.+|.+|+|||++|++.++.+++++
T Consensus        82 ~~~~v~~Ll~~g----advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~iv~~  154 (169)
T 4gpm_A           82 HKEVVKLLISKG----ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEVVKL  154 (169)
T ss_dssp             CHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHCc----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999998    889999999999999999999999999999999 9999999999999999999988877776

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=2.9e-28  Score=241.20  Aligned_cols=203  Identities=19%  Similarity=0.185  Sum_probs=126.3

Q ss_pred             cCCCCcHHHHHHhcCCCccccHHHHHHHHh----hCcccccccc----cCCCcHHHHHH---HcCCHHHHHHHHHccccC
Q 039828           10 SPSGNTLLHIAAAGSIRNHENMAMATTLAR----KYPFLITMQN----SKGDTPLHVAA---RDGMLQTAKILVDCAKRM   78 (626)
Q Consensus        10 ~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~----~~~~~l~~~d----~~G~TpLh~Aa---~~g~~~iv~~Ll~~~~~~   78 (626)
                      +..|+|+||.||..|+   .+  .++.|++    .+.+ ++..+    ..|+||||+|+   +.|+.++|++|++.+++.
T Consensus         2 ~~~~~~~L~~A~~~g~---~~--~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~   75 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGS---PD--GLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT   75 (260)
T ss_dssp             CCCCHHHHHHHHHHTC---GG--GGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHT
T ss_pred             ccchHHHHHHHHHhCC---HH--HHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccc
Confidence            4578999999999999   76  6555555    6665 55554    77999999999   779999999999998764


Q ss_pred             CCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccC-------------
Q 039828           79 TSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMN-------------  145 (626)
Q Consensus        79 ~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~-------------  145 (626)
                      ..... -....++..|..|.||||+|+.       .++          .+++++|++++++++ ..+             
T Consensus        76 ~~~~~-~~~~~~~~~d~~g~t~L~~A~~-------~g~----------~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~  136 (260)
T 3jxi_A           76 GNMRE-FINSPFRDVYYRGQTALHIAIE-------RRC----------KHYVELLVEKGADVH-AQARGRFFQPKDEGGY  136 (260)
T ss_dssp             TCHHH-HHTCCBCCSSEESBCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCCEECCCSSSCCCCS
T ss_pred             cchHh-hhcccccccccCCCCHHHHHHH-------cCC----------HHHHHHHHhCCCCcC-ccccccccCccccccc
Confidence            32100 0111223456699999999999       999          999999999999987 444             


Q ss_pred             -CCCCcHHHHHHHcCCHHHHHHHHH---hCCCCCccccccCCCCHHHHHHHhCC---------HHHHHHHHhcCCccc--
Q 039828          146 -VDCKSPLYLAVESKNEDILEYILE---ALPVNDDCDAKLEGKSPVKVAIELQK---------LGLLKMMHDKQPALL--  210 (626)
Q Consensus       146 -~~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~--  210 (626)
                       ..|.||||+|+..|+.+++++|++   .+.  +....+..|.||||+|+..++         .+++++|++.+ .++  
T Consensus       137 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga--~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~  213 (260)
T 3jxi_A          137 FYFGELPLSLAACTNQPHIVHYLTENGHKQA--DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFP  213 (260)
T ss_dssp             CCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC--CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-HHHCT
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhccccCC--CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-ccccc
Confidence             345555555555555555555555   333  222333344444444444444         34444444443 222  


Q ss_pred             -----cccCCCCCchhhHHhhCCCHHHHHHhhhcC
Q 039828          211 -----LIQDEQMNTPMHWAASVDHLEGVRFLYEIN  240 (626)
Q Consensus       211 -----~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~  240 (626)
                           +..|..|.||||+|+..|+.+++++|++++
T Consensus       214 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  248 (260)
T 3jxi_A          214 DTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE  248 (260)
T ss_dssp             TCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence                 234444444444444444444444444443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=1.1e-27  Score=221.24  Aligned_cols=170  Identities=24%  Similarity=0.268  Sum_probs=149.9

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcC
Q 039828          183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG  262 (626)
Q Consensus       183 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  262 (626)
                      +.+|||.|+..|+.++++.|++.++..++..|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence            468899999999999999999999777899999999999999999999999999999988 7888999999999999999


Q ss_pred             ChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHH
Q 039828          263 CVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVI  342 (626)
Q Consensus       263 ~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~  342 (626)
                      +.+++++|+++|.+++   .+|..|+||||+|+.+++.+++++|++.|    ++++.+|..|+||||+|+..++.+++++
T Consensus        81 ~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~~~~~  153 (172)
T 3v30_A           81 YTDIVGLLLERDVDIN---IYDWNGGTPLLYAVRGNHVKCVEALLARG----ADLTTEADSGYTPMDLAVALGYRKVQQV  153 (172)
T ss_dssp             CHHHHHHHHTTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHcCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCccccCCCCCCHHHHHHHhCcHHHHHH
Confidence            9999999999775544   45889999999999999999999999998    8899999999999999999999999999


Q ss_pred             HhhCCCCcccccccCCCCH
Q 039828          343 LGKDGRAESDIINFYGQTA  361 (626)
Q Consensus       343 Ll~~g~~d~~~~n~~g~tp  361 (626)
                      |++++ ++....|..|.||
T Consensus       154 L~~~~-~~~~~~~~~~~~p  171 (172)
T 3v30_A          154 IENHI-LKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHH-HHHSCC-------
T ss_pred             HHHHH-HHHhcccCCCCCC
Confidence            99999 8999999988887

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=1.2e-29  Score=262.94  Aligned_cols=286  Identities=13%  Similarity=0.083  Sum_probs=190.4

Q ss_pred             CCcHHHHHHh-cCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHH
Q 039828           13 GNTLLHIAAA-GSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLME   91 (626)
Q Consensus        13 g~t~LH~Aa~-~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~   91 (626)
                      +.+++++|+. .++   .+  +++++++++.+        ++||||+||+.|+.++|++|++.++....         .+
T Consensus        65 ~ll~~~~a~~~~~~---~~--~~~~l~~~g~~--------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~---------~~  122 (376)
T 2aja_A           65 QLLCLYYAHYNRNA---KQ--LWSDAHKKGIK--------SEVICFVAAITGCSSALDTLCLLLTSDEI---------VK  122 (376)
T ss_dssp             HHHHHHHHHTTTTC---TT--HHHHHHHHTCC--------HHHHHHHHHHHCCHHHHHHHTTC--CCSS---------CC
T ss_pred             HHHHHHHHHhcCCC---HH--HHHHHHHcCCC--------cCCHHHHHHHcCCHHHHHHHHHcCCcHHH---------HH
Confidence            3457777776 466   77  88888876543        45999999999999999999988763211         01


Q ss_pred             hhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcc--cccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 039828           92 MKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNAS--YLMNVDCKSPLYLAVESKNEDILEYILE  169 (626)
Q Consensus        92 ~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  169 (626)
                      ..|..|.||||+|+.       .|+          .+++++|++++++..  ...+.+ .||||+|+..|+.+++++|++
T Consensus       123 ~~~~~~~tpL~~Aa~-------~G~----------~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~  184 (376)
T 2aja_A          123 VIQAENYQAFRLAAE-------NGH----------LHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCE  184 (376)
T ss_dssp             --CHHHHHHHHHHHH-------TTC----------HHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHH-------cCC----------HHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHH
Confidence            244567789999999       899          999999999987521  122223 899999999999999999999


Q ss_pred             hCCCCCccccccCCCCHHHHHH-HhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccC
Q 039828          170 ALPVNDDCDAKLEGKSPVKVAI-ELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKN  248 (626)
Q Consensus       170 ~~~~~~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d  248 (626)
                      +++.......+..|.||||.|+ ..|+.+++++|++.+ .       .|.||||+|+..|+.+++++|++.+++ .+..+
T Consensus       185 ~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g-a-------~~~taL~~Aa~~g~~evv~lL~~~ga~-~~~~~  255 (376)
T 2aja_A          185 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-V-------MLAYAEIHEFEYGEKYVNPFIARHVNR-LKEMH  255 (376)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-H-------HHHHHHHCTTTTTTTTHHHHHHHHHHH-HHHHH
T ss_pred             cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC-C-------ccchHHHHHHHCCCHHHHHHHHhcCcc-ccccc
Confidence            8763221114556889999999 999999999999855 2       278999999999999999999988776 33332


Q ss_pred             CCCChHHHHHHhcCChHHH------------HHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcch-h
Q 039828          249 EEGLYPFHLASANGCVPVM------------GEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTD-K  315 (626)
Q Consensus       249 ~~g~tpLh~A~~~g~~~~v------------~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~-~  315 (626)
                          ++++.|+..|+.+++            +.++.++                     ..+..+.+++|++.+.... .
T Consensus       256 ----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~---------------------~~~~~~~~~~Ll~~~~vk~l~  310 (376)
T 2aja_A          256 ----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN---------------------DEVLLDDIRFLLSIPGIKALA  310 (376)
T ss_dssp             ----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC---------------------CGGGHHHHHHHHTSTTTGGGS
T ss_pred             ----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcc---------------------hhhHHHHHHHHHhChhhhhhh
Confidence                367788888877743            3344422                     1123566777776532110 1


Q ss_pred             hcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccccc
Q 039828          316 LINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF  376 (626)
Q Consensus       316 ~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~  376 (626)
                      .....++.++||||+|+..|+.+++++|++.|    ..++..++|++++|...|+.++.+.
T Consensus       311 ~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~~~~~~~~~~~~~~~~~~~~~  367 (376)
T 2aja_A          311 PTATIPGDANELLRLALRLGNQGACALLLSIP----SVLALTKANNYYINETGGRLDLRAV  367 (376)
T ss_dssp             SCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHSCC------------------
T ss_pred             ccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh----HHHHHHHHhccccccccccccHHHH
Confidence            11223456889999999999999999999865    6788999999999999988777664

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=8e-28  Score=240.18  Aligned_cols=192  Identities=19%  Similarity=0.192  Sum_probs=144.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHh--
Q 039828          148 CKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAA--  225 (626)
Q Consensus       148 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa--  225 (626)
                      +.+++|.|+..|+.+.++.+++.+........+..|.||||+|+..|+.+++++|++.+..+++..|..|.||||+|+  
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            456777788888888887777654322234455678888888888888888888888875577777888888888887  


Q ss_pred             ---hCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHH
Q 039828          226 ---SVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVS  302 (626)
Q Consensus       226 ---~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i  302 (626)
                         ..++.++++.|++.+.+ ....+..|.||||+|+..|+.+++++|+++|++++.   +|..|+||||+|+.+|+.++
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~---~d~~G~TpLh~A~~~g~~~i  231 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNV---QDDDGSTALMCACEHGHKEI  231 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHHTCHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC---CCCCCCCHHHHHHHCCCHHH
Confidence               55777888888887765 566777788888888888888888888887655443   47778888888888888888


Q ss_pred             HHHHHH-cCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828          303 VTHILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG  347 (626)
Q Consensus       303 ~~~Ll~-~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g  347 (626)
                      +++|++ .|    ++++.+|.+|+||||+|+..|+.+++++|+++.
T Consensus       232 v~~Ll~~~g----ad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          232 AGLLLAVPS----CDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHTSTT----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHhcCC----CCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            888887 55    677778888888888888888888888887765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=2.3e-27  Score=236.83  Aligned_cols=186  Identities=23%  Similarity=0.253  Sum_probs=169.1

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhcCCc-cccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHH--
Q 039828          183 GKSPVKVAIELQKLGLLKMMHDKQPA-LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLAS--  259 (626)
Q Consensus       183 g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~--  259 (626)
                      ..+++|.|+..++.+.++.+++.... .++..|.+|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+  
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            45678899999999999999876522 378899999999999999999999999999998558999999999999999  


Q ss_pred             ---hcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCC
Q 039828          260 ---ANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGH  336 (626)
Q Consensus       260 ---~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~  336 (626)
                         ..++.++++.|++.|..+.   ..+..|+||||+|+.+|+.+++++|++.|    +++|.+|.+|+||||+|+..|+
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~~~---~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g----ad~n~~d~~G~TpLh~A~~~g~  228 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNINA---KASQAGQTALMLAVSHGRVDVVKALLACE----ADVNVQDDDGSTALMCACEHGH  228 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCTTC---CCTTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HhhhhhhHHHHHHHHHcCCCcc---ccCCCCCCHHHHHHHcCCHHHHHHHHhCC----CCCCCCCCCCCCHHHHHHHCCC
Confidence               6689999999999875443   45888999999999999999999999998    8899999999999999999999


Q ss_pred             HHHHHHHhh-CCCCcccccccCCCCHHHHHHHhcccccccc
Q 039828          337 YFVAVILGK-DGRAESDIINFYGQTAYDIAEQQYAKIIPEF  376 (626)
Q Consensus       337 ~~iv~~Ll~-~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~  376 (626)
                      .+++++|++ .| ++++.+|.+|+||+++|+..++.+++++
T Consensus       229 ~~iv~~Ll~~~g-ad~~~~d~~g~TpL~~A~~~g~~~iv~~  268 (276)
T 4hbd_A          229 KEIAGLLLAVPS-CDISLTDRDGSTALMVALDAGQSEIASM  268 (276)
T ss_dssp             HHHHHHHHTSTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHhcCC-CCCcCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999 66 9999999999999999999988877776

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=4.8e-26  Score=210.24  Aligned_cols=170  Identities=18%  Similarity=0.198  Sum_probs=133.1

Q ss_pred             CCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHh
Q 039828           13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEM   92 (626)
Q Consensus        13 g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~   92 (626)
                      +.||||.||..|+   .+  +++++++.++..++.+|..|+||||+|+..|+.++|++|+++|+++            +.
T Consensus         2 ~~~~L~~A~~~g~---~~--~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~   64 (172)
T 3v30_A            2 DSLSIHQLAAQGE---LD--QLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP------------HI   64 (172)
T ss_dssp             --CCHHHHHHTTC---HH--HHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT------------TC
T ss_pred             chhhHHHHHHcCC---HH--HHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------------hh
Confidence            5689999999999   88  9999999998888999999999999999999999999999988765            34


Q ss_pred             hccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 039828           93 KNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALP  172 (626)
Q Consensus        93 ~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  172 (626)
                      .|..|.||||+|+.       .++          .+++++|++++.+++ ..|..|.||||+|+..|+.+++++|++.+.
T Consensus        65 ~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  126 (172)
T 3v30_A           65 LAKERESALSLAST-------GGY----------TDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGA  126 (172)
T ss_dssp             CCTTCCCHHHHHHH-------TTC----------HHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hcccCCCHHHHHHH-------CCC----------HHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            77888899999988       888          888888888888877 677888888888888888888888888766


Q ss_pred             CCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCch
Q 039828          173 VNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTP  220 (626)
Q Consensus       173 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp  220 (626)
                      .  ....+..|.||||+|+..|+.+++++|++++ ......+..|.||
T Consensus       127 ~--~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~-~~~~~~~~~~~~p  171 (172)
T 3v30_A          127 D--LTTEADSGYTPMDLAVALGYRKVQQVIENHI-LKLFQSNLVPADP  171 (172)
T ss_dssp             C--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HHHSCC-------
T ss_pred             C--ccccCCCCCCHHHHHHHhCcHHHHHHHHHHH-HHHhcccCCCCCC
Confidence            3  3345556777777777777777777777776 4444555555554

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=1.8e-26  Score=217.21  Aligned_cols=158  Identities=23%  Similarity=0.191  Sum_probs=106.3

Q ss_pred             cCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHh
Q 039828          181 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASA  260 (626)
Q Consensus       181 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  260 (626)
                      ..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+.
T Consensus        33 ~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~  110 (192)
T 2rfm_A           33 SYNRTPLMVACMLGMENAIDKLVENF-DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSII  110 (192)
T ss_dssp             TTCCCHHHHHHHHTCGGGHHHHHHHH-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhc-cccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHH
Confidence            34556666666666666666666554 44555666677777777777777777777776665 56666677777777777


Q ss_pred             cCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHH
Q 039828          261 NGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVA  340 (626)
Q Consensus       261 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv  340 (626)
                      .|+.+++++|+++|.+++   .+|..|+||||+|+..++.+++++|++.|    ++++.+|..|+||||+|+..|+.+++
T Consensus       111 ~~~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~~v  183 (192)
T 2rfm_A          111 FGYSEMSYFLLEHGANVN---DRNLEGETPLIVASKYGRSEIVKKLLELG----ADISARDLTGLTAEASARIFGRQEVI  183 (192)
T ss_dssp             HTCHHHHHHHHHTTCCSS---CCCTTCCCHHHHHHHHTCHHHHHHHHHTT----CCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             cCCHHHHHHHHHCCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHHHHHHHhCcHHHH
Confidence            777777777777654443   34666777777777777777777777776    66677777777777777777777777


Q ss_pred             HHHhhCC
Q 039828          341 VILGKDG  347 (626)
Q Consensus       341 ~~Ll~~g  347 (626)
                      ++|++.+
T Consensus       184 ~~Ll~~~  190 (192)
T 2rfm_A          184 KIFTEVR  190 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            7776654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=7.4e-29  Score=256.91  Aligned_cols=265  Identities=11%  Similarity=0.094  Sum_probs=184.7

Q ss_pred             cccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCccc--ccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchh
Q 039828            8 ITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFL--ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQID   85 (626)
Q Consensus         8 ~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~--l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   85 (626)
                      ..+.+++||||+||..|+   .+  ++++|++.+...  .+..|..|+||||+||..|+.++|++|+++|++..      
T Consensus        87 ~~g~~~~T~Lh~Aa~~G~---~e--~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~------  155 (376)
T 2aja_A           87 KKGIKSEVICFVAAITGC---SS--ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI------  155 (376)
T ss_dssp             HHTCCHHHHHHHHHHHCC---HH--HHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH------
T ss_pred             HcCCCcCCHHHHHHHcCC---HH--HHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCcc------
Confidence            345677899999999999   88  999999987621  23456778999999999999999999999996421      


Q ss_pred             hhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCccc-ccCCCCCcHHHHHH-HcCCHHH
Q 039828           86 VKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASY-LMNVDCKSPLYLAV-ESKNEDI  163 (626)
Q Consensus        86 ~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~-~~~~~g~tpL~~A~-~~g~~~~  163 (626)
                         ..+..+.+ .||||+|+.       .|+          .+++++|+++++++.. ..|..|.||||+|+ ..|+.++
T Consensus       156 ---~~~i~~~~-~TpLh~Aa~-------~G~----------~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~ei  214 (376)
T 2aja_A          156 ---MAMIQAEN-YHAFRLAAE-------NGH----------LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV  214 (376)
T ss_dssp             ---HHHHSHHH-HHHHHHHHH-------TTC----------HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred             ---ccccCCCC-CCHHHHHHH-------CCC----------HHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHH
Confidence               11122233 999999999       999          9999999999998763 26778999999999 9999999


Q ss_pred             HHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHH----------
Q 039828          164 LEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGV----------  233 (626)
Q Consensus       164 v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v----------  233 (626)
                      +++|++.+.         .|.||||.|+..|+.+++++|++.+ ..++..|    ++++.|+..|+.+++          
T Consensus       215 v~~Ll~~ga---------~~~taL~~Aa~~g~~evv~lL~~~g-a~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~  280 (376)
T 2aja_A          215 INFLLDCPV---------MLAYAEIHEFEYGEKYVNPFIARHV-NRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFY  280 (376)
T ss_dssp             HHHHTTSHH---------HHHHHHHCTTTTTTTTHHHHHHHHH-HHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHH
T ss_pred             HHHHHhCCC---------ccchHHHHHHHCCCHHHHHHHHhcC-ccccccc----HHHHHHHHCCChhhhcHHhhhhhHH
Confidence            999999543         3789999999999999999999988 4444433    488899998887743          


Q ss_pred             --HHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCC--CcccccCCCchHHHHHHHcCChHHHHHHHHc
Q 039828          234 --RFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH--PNELFNNKGQNILHVAAKKGRDVSVTHILEA  309 (626)
Q Consensus       234 --~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~--~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~  309 (626)
                        +.|+..+.                   .+..+.+++|++.+....  ........+.|+||+|+..|+.+++++|++.
T Consensus       281 ~~~~li~~~~-------------------~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~  341 (376)
T 2aja_A          281 MLRNLIRRND-------------------EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  341 (376)
T ss_dssp             HHHHHHHHCC-------------------GGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHHHcch-------------------hhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC
Confidence              34444321                   123566677765221000  0011234567899999999999999999987


Q ss_pred             CCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHh
Q 039828          310 SDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILG  344 (626)
Q Consensus       310 ~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll  344 (626)
                      +       ..+|..|+|++.+|-..|+.++++.-+
T Consensus       342 ~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~  369 (376)
T 2aja_A          342 P-------SVLALTKANNYYINETGGRLDLRAVAL  369 (376)
T ss_dssp             H-------HHHHSCC--------------------
T ss_pred             h-------HHHHHHHHhccccccccccccHHHHHH
Confidence            4       456788999999999999998877544

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=1.4e-26  Score=217.88  Aligned_cols=159  Identities=21%  Similarity=0.168  Sum_probs=148.4

Q ss_pred             cccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCc
Q 039828          209 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQ  288 (626)
Q Consensus       209 ~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~  288 (626)
                      ..+.+|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|.+++   .+|..|+
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~  102 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN---TKDFSGK  102 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT---CCCTTSC
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC---CCCCCCC
Confidence            3567899999999999999999999999999887 78889999999999999999999999999886554   4588999


Q ss_pred             hHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHh
Q 039828          289 NILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ  368 (626)
Q Consensus       289 t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~  368 (626)
                      ||||+|+..++.+++++|++.+    ++++.+|..|+||||+|+..|+.+++++|++.| ++++.+|..|.||+++|...
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~  177 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEHG----ANVNDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASARIF  177 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTT----CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHT
T ss_pred             cHHHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHh
Confidence            9999999999999999999998    889999999999999999999999999999999 99999999999999999999


Q ss_pred             cccccccc
Q 039828          369 YAKIIPEF  376 (626)
Q Consensus       369 ~~~~i~~~  376 (626)
                      ++.+++++
T Consensus       178 ~~~~~v~~  185 (192)
T 2rfm_A          178 GRQEVIKI  185 (192)
T ss_dssp             TCHHHHHH
T ss_pred             CcHHHHHH
Confidence            88777765

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=6.2e-26  Score=208.39  Aligned_cols=157  Identities=18%  Similarity=0.189  Sum_probs=122.0

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhc
Q 039828          182 EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASAN  261 (626)
Q Consensus       182 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  261 (626)
                      .|.||||.|+..|+.+++++|++.+ ..++..|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||.|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHS-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcC-CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHc
Confidence            3667777777777777777777776 55677777888888888888888888888887766 666777888888888888


Q ss_pred             CChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHH
Q 039828          262 GCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAV  341 (626)
Q Consensus       262 g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~  341 (626)
                      |+.+++++|+++|.+++   .+|..|+||||+|+..++.+++++|++.|    ++++.+|..|+||||+|+..|+.++++
T Consensus        80 ~~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~l~~A~~~~~~~~~~  152 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDVN---EYDWNGGTPLLYAVHGNHVKCVKMLLESG----ADPTIETDSGYNSMDLAVALGYRSVQQ  152 (167)
T ss_dssp             TCHHHHHHHHHHTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHHHCCCCCC---cCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            88888888888765544   34777888888888888888888888877    677778888888888888888888888


Q ss_pred             HHhhCC
Q 039828          342 ILGKDG  347 (626)
Q Consensus       342 ~Ll~~g  347 (626)
                      +|++++
T Consensus       153 ~L~~~~  158 (167)
T 3v31_A          153 VIESHL  158 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887765

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=4.5e-26  Score=211.96  Aligned_cols=168  Identities=18%  Similarity=0.200  Sum_probs=152.8

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhc
Q 039828          182 EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASAN  261 (626)
Q Consensus       182 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  261 (626)
                      .+.++||.|+..|+.++++.|++.++.+++..|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence            5788999999999999999999998788999999999999999999999999999999988 888899999999999999


Q ss_pred             CChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHH
Q 039828          262 GCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAV  341 (626)
Q Consensus       262 g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~  341 (626)
                      |+.+++++|+++|.+++   .+|..|+||||+|+..++.+++++|++.|    ++++.+|..|+||||+|+..++.++++
T Consensus        83 ~~~~~v~~Ll~~g~~~~---~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~tpl~~A~~~~~~~~~~  155 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADIN---AVNEHGNVPLHYACFWGQDQVAEDLVANG----ALVSICNKYGEMPVDKAKAPLRELLRE  155 (179)
T ss_dssp             TCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCSSBCCTTSCCGGGGSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCC---ccCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCcchhccCCCCcHHHHHHHHHHHHHH
Confidence            99999999999876554   45889999999999999999999999998    889999999999999999999999999


Q ss_pred             HHhhCCCCcccccccCC
Q 039828          342 ILGKDGRAESDIINFYG  358 (626)
Q Consensus       342 ~Ll~~g~~d~~~~n~~g  358 (626)
                      +|++.| ++++..+..+
T Consensus       156 ~L~~~g-~~~~~~~~~~  171 (179)
T 3f6q_A          156 RAEKMG-QNLNRIPYKD  171 (179)
T ss_dssp             HHHHTT-CCCSCBCCCC
T ss_pred             HHHHhh-cCcccCCccc
Confidence            999999 9988776554

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=6.2e-26  Score=207.15  Aligned_cols=157  Identities=22%  Similarity=0.231  Sum_probs=134.5

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcC
Q 039828          183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG  262 (626)
Q Consensus       183 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  262 (626)
                      ..||||.|+..|+.+++++|++.+ ..++..|..|.||||+|+. |+.+++++|++.+++ ++..|..|.||||.|+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSC-CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCC-CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence            567888888888888888888877 5677888899999999988 999999999998887 7788889999999999999


Q ss_pred             ChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhh-cccCCCCCCCHHHHHHHhCCHHHHH
Q 039828          263 CVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKL-INEMDDDGNTPLHLAALYGHYFVAV  341 (626)
Q Consensus       263 ~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~-in~~d~~G~TpLhlA~~~~~~~iv~  341 (626)
                      +.+++++|+++|.+++   .+|..|+||||+|+.+|+.+++++|++.+    .+ ++.+|..|+||||+|+..|+.++++
T Consensus        82 ~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~~g~t~l~~A~~~~~~~~~~  154 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVN---IEDNEGNLPLHLAAKEGHLRVVEFLVKHT----ASNVGHRNHKGDTACDLARLYGRNEVVS  154 (162)
T ss_dssp             CHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHHS----CCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHcCCCCC---CcCCCCCCHHHHHHHcCCHHHHHHHHHcc----CCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence            9999999999775544   45888999999999999999999999988    44 6888999999999999999999999


Q ss_pred             HHhhCCCCc
Q 039828          342 ILGKDGRAE  350 (626)
Q Consensus       342 ~Ll~~g~~d  350 (626)
                      +|+++| +|
T Consensus       155 ~Ll~~G-Ad  162 (162)
T 1ihb_A          155 LMQANG-AG  162 (162)
T ss_dssp             HHHHTC---
T ss_pred             HHHHhC-CC
Confidence            999988 54

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=1.2e-25  Score=206.96  Aligned_cols=158  Identities=24%  Similarity=0.234  Sum_probs=126.9

Q ss_pred             cCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHh
Q 039828          181 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASA  260 (626)
Q Consensus       181 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  260 (626)
                      ..+.++|+.|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++.+++ .+..|..|.||||.|+.
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANG-ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHH
Confidence            34566778888888888888887776 56677788888888888888888888888888776 67778888888888888


Q ss_pred             cCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHH
Q 039828          261 NGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVA  340 (626)
Q Consensus       261 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv  340 (626)
                      .|+.+++++|+++|.+++   .+|..|+||||+|+.+++.+++++|++.|    ++++.+|..|+||||+|+..++.+++
T Consensus        90 ~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~l~~A~~~~~~~~~  162 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADVN---ANDMEGHTPLHLAAMFGHLEIVEVLLKNG----ADVNAQDKFGKTAFDISIDNGNEDLA  162 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cCCHHHHHHHHHcCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHhCCHHHH
Confidence            888888888888765543   34778888888888888888888888887    77888888888888888888888888


Q ss_pred             HHHhhCC
Q 039828          341 VILGKDG  347 (626)
Q Consensus       341 ~~Ll~~g  347 (626)
                      ++|++.|
T Consensus       163 ~~L~~~G  169 (169)
T 2y1l_E          163 EILQKLN  169 (169)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHcC
Confidence            8888764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=1e-25  Score=206.99  Aligned_cols=152  Identities=23%  Similarity=0.262  Sum_probs=142.4

Q ss_pred             CCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHH
Q 039828          216 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAA  295 (626)
Q Consensus       216 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~  295 (626)
                      .|.||||.|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|+++|.+++.   +|..|+||||+|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~   77 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL---LGKGRESALSLAC   77 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTCCCHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC---cCCCCCcHHHHHH
Confidence            578999999999999999999999877 888999999999999999999999999998765544   4889999999999


Q ss_pred             HcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhccccccc
Q 039828          296 KKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPE  375 (626)
Q Consensus       296 ~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~  375 (626)
                      .+++.+++++|++.+    .+++.+|..|+||||+|+..++.+++++|++.| ++++.+|..|+||+|+|...++.++++
T Consensus        78 ~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~  152 (167)
T 3v31_A           78 SKGYTDIVKMLLDCG----VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQ  152 (167)
T ss_dssp             HHTCHHHHHHHHHHT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HcCCHHHHHHHHHCC----CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            999999999999998    889999999999999999999999999999999 999999999999999999998877766


Q ss_pred             c
Q 039828          376 F  376 (626)
Q Consensus       376 ~  376 (626)
                      +
T Consensus       153 ~  153 (167)
T 3v31_A          153 V  153 (167)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=9.5e-26  Score=206.71  Aligned_cols=157  Identities=24%  Similarity=0.281  Sum_probs=126.5

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhc
Q 039828          182 EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASAN  261 (626)
Q Consensus       182 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  261 (626)
                      .+.++||.|+..|+.++++.|++.++...+..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHc
Confidence            4667777777777777777777766666777777888888888888888888888888777 777788888888888888


Q ss_pred             CChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHH
Q 039828          262 GCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAV  341 (626)
Q Consensus       262 g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~  341 (626)
                      |+.+++++|+++|.+++.   +|..|+||||+|+.+++.+++++|++.|    ++++.+|.+|+||||+|+. ++.++++
T Consensus        86 ~~~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~a~~-~~~~i~~  157 (165)
T 3twr_A           86 GHYEVAELLVKHGAVVNV---ADLWKFTPLHEAAAKGKYEICKLLLQHG----ADPTKKNRDGNTPLDLVKD-GDTDIQD  157 (165)
T ss_dssp             TCHHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCTGGGSCT-TCHHHHH
T ss_pred             CcHHHHHHHHhCCCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCcccCCCCCChhHhHhc-CChHHHH
Confidence            888888888887655543   4778888888888888888888888887    7788888888888888766 8888888


Q ss_pred             HHhhCC
Q 039828          342 ILGKDG  347 (626)
Q Consensus       342 ~Ll~~g  347 (626)
                      +|++.|
T Consensus       158 ~L~~~g  163 (165)
T 3twr_A          158 LLRGDA  163 (165)
T ss_dssp             HHHTC-
T ss_pred             HHhhcc
Confidence            888776

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=8.4e-28  Score=232.88  Aligned_cols=200  Identities=13%  Similarity=0.021  Sum_probs=157.8

Q ss_pred             HHHHHhCCCCCc-cccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCc
Q 039828          165 EYILEALPVNDD-CDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDS  243 (626)
Q Consensus       165 ~~Ll~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~  243 (626)
                      +.|++.+..... ...+..+.||||.|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++.+++ 
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-   79 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEM-NDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-   79 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHS-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence            456665554332 233455777888888888888888888887 57788889999999999999999999999999887 


Q ss_pred             ccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHH--HHcCChHHHHHHHHcCCcchhhcccCC
Q 039828          244 VLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVA--AKKGRDVSVTHILEASDLTDKLINEMD  321 (626)
Q Consensus       244 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A--~~~~~~~i~~~Ll~~~~~~~~~in~~d  321 (626)
                      ++..|..|.||||+|+..|+.+++++|+++|.+++..  .+..|+||||+|  +..++.+++++|++.|    ++++.+|
T Consensus        80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~--~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g----a~~~~~~  153 (229)
T 2vge_A           80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT--TLSDGATAFEKCDPYREGYADCATYLADVE----QSMGLMN  153 (229)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC--CSSTTCCTGGGCCTTSTTHHHHHHHHHHHH----HHTTTSG
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc--cCCCCCCHHHHHHHHhcChHHHHHHHHHcC----CCccccc
Confidence            7888889999999999999999999999977655443  146899999999  8999999999999997    8899999


Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHhhCCCCc--ccccccCCCCHHHHHHHhcccccccc
Q 039828          322 DDGNTPLHLAALYGHYFVAVILGKDGRAE--SDIINFYGQTAYDIAEQQYAKIIPEF  376 (626)
Q Consensus       322 ~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d--~~~~n~~g~tpl~la~~~~~~~i~~~  376 (626)
                      ..|.||+|.++....   .++|++.| ++  ++.+|.+|+||||+|+..|+.++++.
T Consensus       154 ~~~~~~l~~~~~~~~---~~~ll~~g-a~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          154 SGAVYALWDYSAEFG---DELSFREG-ESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             GGEEEESSCBCCSST---TBCCBCTT-CEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             CCchHHHHHHhhccc---cccCcccc-ccccccccCCCcccHHHHHHHcCCcceeeh
Confidence            999999986555443   35777777 66  67889999999999999998888764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=2.3e-25  Score=201.47  Aligned_cols=149  Identities=15%  Similarity=0.155  Sum_probs=72.4

Q ss_pred             CHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCCh
Q 039828          185 SPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCV  264 (626)
Q Consensus       185 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  264 (626)
                      ++|+.|+..|+.+++++|++.+. ..+ .|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~-~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGA-PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTC-CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCC-CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcChH
Confidence            44555555555555555555442 111 344455555555555555555555554444 444444555555555555555


Q ss_pred             HHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHH
Q 039828          265 PVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL  343 (626)
Q Consensus       265 ~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~L  343 (626)
                      +++++|+++|.+++   .+|..|+||||+|+.+++.+++++|++.|    ++++.+|..|+||||+|+..|+.+++++|
T Consensus        81 ~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           81 NIVEVLLKHGADVN---AKDMLKMTALHWATEHNHQEVVELLIKYG----ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            55555554433322   22444555555555555555555555544    44444455555555555555555554443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=5.2e-25  Score=199.70  Aligned_cols=154  Identities=16%  Similarity=0.141  Sum_probs=128.5

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcC
Q 039828          183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG  262 (626)
Q Consensus       183 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  262 (626)
                      +.||||.|+..|+.++++.|++..+.+++..|..|.||||+ +..|+.+++++|++.+++ ++..|..|.||||.|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcC
Confidence            35788888888888888888887555777888888899998 888889999999888877 7778888899999999999


Q ss_pred             ChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHH
Q 039828          263 CVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVI  342 (626)
Q Consensus       263 ~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~  342 (626)
                      +.+++++|+++|.+++   .+|..|+||||+|+.+|+.+++++|++.     .+++.+|.+|+||||+|+..|+.+++++
T Consensus        80 ~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~~~~~~~~~g~t~l~~A~~~~~~~~v~~  151 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVN---VPDGTGALPIHLAVQEGHTAVVSFLAAE-----SDLHRRDARGLTPLELALQRGAQDLVDI  151 (156)
T ss_dssp             CHHHHHHHHHTTCCSC---CCCTTSCCHHHHHHHHTCHHHHHHHHTT-----SCTTCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred             cHHHHHHHHHcCCCCC---CcCCCCCcHHHHHHHhChHHHHHHHHhc-----cCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            9999999988775544   3477889999999999999999988876     5677888889999999999999999998


Q ss_pred             HhhC
Q 039828          343 LGKD  346 (626)
Q Consensus       343 Ll~~  346 (626)
                      |+++
T Consensus       152 Ll~~  155 (156)
T 1bd8_A          152 LQGH  155 (156)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            8764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.92  E-value=6.6e-25  Score=198.43  Aligned_cols=150  Identities=24%  Similarity=0.215  Sum_probs=111.9

Q ss_pred             CchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHc
Q 039828          218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKK  297 (626)
Q Consensus       218 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~  297 (626)
                      .+|||.|+..|+.+++++|++.+.+ .. .+..|.||||.|+..|+.+++++|++.|.+++   .+|..|+||||+|+.+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD---ARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT---CCCTTCCCHHHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCC-CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCCCHHHHHHHc
Confidence            5677777777788888777777765 33 46677778888877777788777777664443   3467777788888777


Q ss_pred             CChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhccccccccc
Q 039828          298 GRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFS  377 (626)
Q Consensus       298 ~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~~  377 (626)
                      ++.+++++|++.|    ++++.+|..|+||||+|+..++.+++++|+++| ++++.+|..|.||+|+|...++.++++++
T Consensus        78 ~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           78 GHANIVEVLLKHG----ADVNAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ChHHHHHHHHHcC----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            7777777777776    667777777778888887777777887777777 77777777777888887777777666553

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.92  E-value=1.6e-24  Score=199.36  Aligned_cols=161  Identities=19%  Similarity=0.226  Sum_probs=144.2

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhh
Q 039828          143 LMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMH  222 (626)
Q Consensus       143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh  222 (626)
                      .....+.++|+.|+..|+.+++++|++.+..  ....+..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~   85 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANGAD--VNAEDASGWTPLHLAAFNGHLEIVEVLLKNG-ADVNAVDHAGMTPLR   85 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHH
Confidence            3456778999999999999999999999773  4456678999999999999999999999998 778889999999999


Q ss_pred             HHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHH
Q 039828          223 WAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVS  302 (626)
Q Consensus       223 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i  302 (626)
                      +|+..|+.+++++|++.+++ .+..|..|.||||+|+..|+.+++++|+++|.+++   .+|..|+||||+|+.+++.++
T Consensus        86 ~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~l~~A~~~~~~~~  161 (169)
T 2y1l_E           86 LAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN---AQDKFGKTAFDISIDNGNEDL  161 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---CcCCCCCCHHHHHHHhCCHHH
Confidence            99999999999999999988 88899999999999999999999999999886654   458899999999999999999


Q ss_pred             HHHHHHcC
Q 039828          303 VTHILEAS  310 (626)
Q Consensus       303 ~~~Ll~~~  310 (626)
                      +++|++.|
T Consensus       162 ~~~L~~~G  169 (169)
T 2y1l_E          162 AEILQKLN  169 (169)
T ss_dssp             HHHHHTC-
T ss_pred             HHHHHHcC
Confidence            99999864

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.92  E-value=1.5e-25  Score=205.37  Aligned_cols=155  Identities=23%  Similarity=0.246  Sum_probs=140.4

Q ss_pred             cCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHH
Q 039828          213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH  292 (626)
Q Consensus       213 ~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh  292 (626)
                      .|.+|.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|+++|.+++   .+|..|+||||
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~L~   80 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH---AKDKGGLVPLH   80 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCCHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC---ccCCCCCCHHH
Confidence            467889999999999999999999997776678888999999999999999999999999876554   45889999999


Q ss_pred             HHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccc
Q 039828          293 VAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKI  372 (626)
Q Consensus       293 ~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~  372 (626)
                      +|+..++.+++++|++.+    ++++.+|..|+||||+|+..++.+++++|+++| ++++.+|.+|+||+|+|.+ ++.+
T Consensus        81 ~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~~  154 (165)
T 3twr_A           81 NACSYGHYEVAELLVKHG----AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDTD  154 (165)
T ss_dssp             HHHHTTCHHHHHHHHHTT----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCHH
T ss_pred             HHHHcCcHHHHHHHHhCC----CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc-CChH
Confidence            999999999999999998    889999999999999999999999999999999 9999999999999999876 5555


Q ss_pred             cccc
Q 039828          373 IPEF  376 (626)
Q Consensus       373 i~~~  376 (626)
                      +.++
T Consensus       155 i~~~  158 (165)
T 3twr_A          155 IQDL  158 (165)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5555

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.92  E-value=1.3e-24  Score=198.32  Aligned_cols=156  Identities=20%  Similarity=0.197  Sum_probs=92.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhC
Q 039828          148 CKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASV  227 (626)
Q Consensus       148 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~  227 (626)
                      ..||||.|+..|+.+++++|++.+.  +....+..|.||||.|+. |+.+++++|++.+ .+++.+|..|.||||+|+..
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNV--NVNAQNGFGRTALQVMKL-GNPEIARRLLLRG-ANPDLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCC--CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCC--CccccCccCccHHHHHHc-CcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHc
Confidence            3456666666666666666665544  223334455666666655 6666666666655 44555566666666666666


Q ss_pred             CCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHH
Q 039828          228 DHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL  307 (626)
Q Consensus       228 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll  307 (626)
                      |+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|..+  .+.+|..|+||||+|+.+++.+++++|+
T Consensus        81 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  157 (162)
T 1ihb_A           81 GFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLARLYGRNEVVSLMQ  157 (162)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC--CCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            666666666666655 5556666666666666666666666666654332  2334566666666666666666666666


Q ss_pred             HcC
Q 039828          308 EAS  310 (626)
Q Consensus       308 ~~~  310 (626)
                      ++|
T Consensus       158 ~~G  160 (162)
T 1ihb_A          158 ANG  160 (162)
T ss_dssp             HTC
T ss_pred             HhC
Confidence            665

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.92  E-value=1.4e-27  Score=231.36  Aligned_cols=202  Identities=15%  Similarity=0.084  Sum_probs=164.6

Q ss_pred             HHhhcCCCCcc--cccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCc
Q 039828          131 RSLVSEDPNAS--YLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPA  208 (626)
Q Consensus       131 ~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  208 (626)
                      +.|++++.+..  ...+.++.||||+|+..|+.+++++|++.+..  ....+..|.||||+|+..|+.+++++|++.+ .
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a   78 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND--PSQPNEEGITALHNAICGANYSIVDFLITAG-A   78 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-C
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-C
Confidence            45666665554  23456778899999999999999999999874  4456678999999999999999999999998 7


Q ss_pred             cccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccC-CCCChHHHHH--HhcCChHHHHHHHhccCCCCCcccccC
Q 039828          209 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKN-EEGLYPFHLA--SANGCVPVMGEFLEKENMPHPNELFNN  285 (626)
Q Consensus       209 ~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A--~~~g~~~~v~~Ll~~g~~~~~~~~~d~  285 (626)
                      +++..|..|.||||+|+..|+.+++++|++.+++ ++..+ ..|.||||+|  +..|+.+++++|+++|.+++.   +|.
T Consensus        79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~---~~~  154 (229)
T 2vge_A           79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL---MNS  154 (229)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTT---SGG
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccc---ccC
Confidence            8899999999999999999999999999999998 55554 7999999999  999999999999999876655   478


Q ss_pred             CCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHh
Q 039828          286 KGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILG  344 (626)
Q Consensus       286 ~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll  344 (626)
                      .|.|+++.++.....   ++|++.|.  +.+++.+|.+|+||||+|+..|+.++|+.++
T Consensus       155 ~~~~~l~~~~~~~~~---~~ll~~ga--~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          155 GAVYALWDYSAEFGD---ELSFREGE--SVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             GEEEESSCBCCSSTT---BCCBCTTC--EEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             CchHHHHHHhhcccc---ccCccccc--cccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            899999866554433   56666662  2348889999999999999999999887543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.92  E-value=1.1e-24  Score=202.44  Aligned_cols=162  Identities=16%  Similarity=0.136  Sum_probs=101.6

Q ss_pred             cCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHH
Q 039828           10 SPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFL   89 (626)
Q Consensus        10 ~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~   89 (626)
                      ++++.++||.||..|+   .+  ++++|++.++.+++.+|..|+||||+||..|+.+++++|++.|++++          
T Consensus         2 ~~~~~~~l~~A~~~g~---~~--~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------   66 (179)
T 3f6q_A            2 SPEFMDDIFTQCREGN---AV--AVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN----------   66 (179)
T ss_dssp             -----CCHHHHHHHTC---HH--HHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------
T ss_pred             CHHHHHHHHHHHHcCC---HH--HHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC----------
Confidence            3567777888888887   77  78888877666677777788888888888888888888887776542          


Q ss_pred             HHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 039828           90 MEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILE  169 (626)
Q Consensus        90 l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  169 (626)
                        .+|..|.||||+|+.       .++          .+++++|++++++++ ..|..|.||||+|+..|+.+++++|++
T Consensus        67 --~~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~  126 (179)
T 3f6q_A           67 --VMNRGDDTPLHLAAS-------HGH----------RDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVA  126 (179)
T ss_dssp             --CCCTTCCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --CcCCCCCCHHHHHHH-------cCC----------HHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence              355566666666666       555          666666666655554 445555555555555555555555555


Q ss_pred             hCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCC
Q 039828          170 ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD  242 (626)
Q Consensus       170 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (626)
                      .+.                                    +++.+|..|.||||+|+..++.+++++|++.+++
T Consensus       127 ~ga------------------------------------~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~  163 (179)
T 3f6q_A          127 NGA------------------------------------LVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN  163 (179)
T ss_dssp             TTC------------------------------------CSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             CCC------------------------------------CcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence            443                                    3444555566666666666666666666665555

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=2.8e-24  Score=194.86  Aligned_cols=153  Identities=18%  Similarity=0.204  Sum_probs=111.3

Q ss_pred             CCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHh
Q 039828           13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEM   92 (626)
Q Consensus        13 g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~   92 (626)
                      |.|+||.|+..|+   .+  ++++|++..+.+++..|..|+||||+ +..|+.+++++|++.|+++            +.
T Consensus         2 ~~~~L~~A~~~g~---~~--~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~------------~~   63 (156)
T 1bd8_A            2 AGDRLSGAAARGD---VQ--EVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP------------NV   63 (156)
T ss_dssp             HHHHHHHHHHHTC---HH--HHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT------------TC
T ss_pred             cchHHHHHHHhCC---HH--HHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC------------CC
Confidence            5678888888888   77  88888887544577788888888888 8888888888888887754            23


Q ss_pred             hccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 039828           93 KNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALP  172 (626)
Q Consensus        93 ~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  172 (626)
                      +|..|.||||+|+.       .++          .+++++|++++.+++ ..|..|+||||+|+..|+.+++++|++. .
T Consensus        64 ~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~  124 (156)
T 1bd8_A           64 QDTSGTSPVHDAAR-------TGF----------LDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE-S  124 (156)
T ss_dssp             CCTTSCCHHHHHHH-------TTC----------HHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTT-S
T ss_pred             cCCCCCCHHHHHHH-------cCc----------HHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhChHHHHHHHHhc-c
Confidence            66777777777777       777          777777777777766 5666777777777777777777777766 3


Q ss_pred             CCCccccccCCCCHHHHHHHhCCHHHHHHHHh
Q 039828          173 VNDDCDAKLEGKSPVKVAIELQKLGLLKMMHD  204 (626)
Q Consensus       173 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  204 (626)
                        +....+..|.||||.|+..|+.+++++|++
T Consensus       125 --~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          125 --DLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             --CTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             --CCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence              333444556666666666666666666664

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=3.6e-26  Score=223.15  Aligned_cols=206  Identities=12%  Similarity=0.084  Sum_probs=133.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHH
Q 039828          145 NVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWA  224 (626)
Q Consensus       145 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  224 (626)
                      +..|.||||.|+..|+.+.++.|++++...+   .+..|.||||.|+..|+.++++.|++.+ .+++.+|..|.||||+|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~---~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK---FNPLPLALLLDSSLEGEFDLVQRIIYEV-DDPSLPNDEGITALHNA   77 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTT-SSCCCCCTTSCCHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcc---cCchhhHHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHH
Confidence            3468899999999999999999999877443   2356889999999999999999999888 57888889999999999


Q ss_pred             hhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCc-hHHHHH--HHcCChH
Q 039828          225 ASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQ-NILHVA--AKKGRDV  301 (626)
Q Consensus       225 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~  301 (626)
                      +..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|+++|++++..   +..|. ||||+|  +..|+.+
T Consensus        78 ~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~---~~~~~~t~l~~a~~~~~g~~~  153 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM---TYSDMQTAADKCEEMEEGYTQ  153 (239)
T ss_dssp             HHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC---CSSSCCCHHHHCCSSSTTCCC
T ss_pred             HHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccee---cCCCCcchHHHHHHhhhccHH
Confidence            999999999999998887 7888889999999999999999999999977665543   55555 999998  7788899


Q ss_pred             HHHHHHHcCCcchhhcccC---------CCCCCCHHHHHHHhCCHHHHHHHhhCCCCc------ccccccCCCCHHHHH
Q 039828          302 SVTHILEASDLTDKLINEM---------DDDGNTPLHLAALYGHYFVAVILGKDGRAE------SDIINFYGQTAYDIA  365 (626)
Q Consensus       302 i~~~Ll~~~~~~~~~in~~---------d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d------~~~~n~~g~tpl~la  365 (626)
                      ++++|++.+    ++++..         |..+.++++++...|.  +++.|.+.+ .+      ....+..|.+|.++.
T Consensus       154 ~~~~Ll~~~----a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~-~~~~~Ww~~~~~~~~G~~P~~yv  225 (239)
T 1ycs_B          154 CSQFLYGVQ----EKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRED-EDEIEWWWARLNDKEGYVPRNLL  225 (239)
T ss_dssp             HHHHHHHHH----HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCT-TSCSSEEEEEETTEEEEEEGGGE
T ss_pred             HHHHHHHhh----hcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecC-CCCCCEEEEEECCcEEEeehHHe
Confidence            999999887    444443         6678888888887776  344444433 22      234556666666554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=1.8e-25  Score=218.13  Aligned_cols=179  Identities=12%  Similarity=0.029  Sum_probs=131.0

Q ss_pred             cCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHh
Q 039828          181 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASA  260 (626)
Q Consensus       181 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  260 (626)
                      ..|.||||.|+..++.+.++.|++++ ..++. +..|.||||.|+..|+.+++++|++.+++ ++..|..|.||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g-~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHG-MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccC-CCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence            35899999999999999999999998 55553 47789999999999999999999999987 88899999999999999


Q ss_pred             cCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCC-CHHHHH--HHhCCH
Q 039828          261 NGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGN-TPLHLA--ALYGHY  337 (626)
Q Consensus       261 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~-TpLhlA--~~~~~~  337 (626)
                      .|+.+++++|+++|.+++   .+|..|+||||+|+.+|+.+++++|+++|    ++++.+|..|. ||||+|  +..|+.
T Consensus        80 ~g~~~~v~~Ll~~ga~~~---~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~~~~t~l~~a~~~~~g~~  152 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNVN---AADSDGWTPLHCAASCNNVQVCKFLVESG----AAVFAMTYSDMQTAADKCEEMEEGYT  152 (239)
T ss_dssp             HTCHHHHHHHHHHTCCTT---CCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCSSSCCCHHHHCCSSSTTCC
T ss_pred             cCCHHHHHHHHHcCCCCC---ccCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCcceecCCCCcchHHHHHHhhhccH
Confidence            999999999999886654   45889999999999999999999999998    88999998887 999999  788999


Q ss_pred             HHHHHHhhCCCCccccc---------ccCCCCHHHHHHHhcc
Q 039828          338 FVAVILGKDGRAESDII---------NFYGQTAYDIAEQQYA  370 (626)
Q Consensus       338 ~iv~~Ll~~g~~d~~~~---------n~~g~tpl~la~~~~~  370 (626)
                      +++++|++.+ ++++..         +..++++.+++.+.|.
T Consensus       153 ~~~~~Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          153 QCSQFLYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             CHHHHHHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHHHHHHhh-hcccccccceEEEEeccCCCCCCcccccCCC
Confidence            9999999998 887766         5567888887766554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=8.1e-24  Score=191.93  Aligned_cols=145  Identities=22%  Similarity=0.140  Sum_probs=109.2

Q ss_pred             cccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCch-
Q 039828          211 LIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQN-  289 (626)
Q Consensus       211 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t-  289 (626)
                      ...+..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+ .|+.+++++|+++|.+++   .+|..|+| 
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~---~~d~~g~tt   80 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN---CADPATLTR   80 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC---CCCTTTCCC
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC---CcCCCCCcH
Confidence            34577888899999999999999999988877 7778888999999885 888999999998775544   45888998 


Q ss_pred             HHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHH
Q 039828          290 ILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA  365 (626)
Q Consensus       290 ~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la  365 (626)
                      |||+|+.+|+.+++++|++.|    ++++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||.+-+
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           81 PVHDAAREGFLDTLVVLHRAG----ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHT----CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             HHHHHHHCCCHHHHHHHHHcC----CCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcC-CCCCccCcCcCcccccC
Confidence            999999999999999999998    888999999999999999999999999999999 99999999999998744

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.89  E-value=2.8e-23  Score=183.69  Aligned_cols=133  Identities=22%  Similarity=0.192  Sum_probs=113.6

Q ss_pred             ccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCC-
Q 039828          208 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNK-  286 (626)
Q Consensus       208 ~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~-  286 (626)
                      .+++..|..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+. |+.+++++|+++|.+++.   +|.. 
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~---~~~~~   77 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC---ADPAT   77 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC---CBTTT
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC---cCCCC
Confidence            45677888888999999999999999999988877 77788888999999988 999999999987765543   4777 


Q ss_pred             CchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCc
Q 039828          287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAE  350 (626)
Q Consensus       287 g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d  350 (626)
                      |+||||+|+..++.+++++|++.+    ++++.+|..|+||||+|+..++.+++++|+++| +|
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G-ad  136 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAG----ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT-GD  136 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTC----CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH-CC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC----CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence            899999999999999999999887    778889999999999999999999999998877 43

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=1.4e-23  Score=195.79  Aligned_cols=161  Identities=12%  Similarity=-0.002  Sum_probs=118.7

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhcCCccccccC-CCCCchhhHHhhCCCH----HHHHHhhhcCCCcccccCCCCChHHHH
Q 039828          183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQD-EQMNTPMHWAASVDHL----EGVRFLYEINPDSVLQKNEEGLYPFHL  257 (626)
Q Consensus       183 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~  257 (626)
                      +.++|+.|+..|+.+.++.+++.+.   +..+ ..|+||||+|+..|+.    +++++|++.|++ ++.+|..|+||||+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~   81 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFP   81 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHH
Confidence            4566777777777777777776652   2233 5678888888887764    478888888877 77778888888888


Q ss_pred             HHhcCC------hHHHHHHHhccCCCCCcccccCCCc-hHHHHHHHcCC-----hHHHHHHHH-cCCcchhhcccCCCCC
Q 039828          258 ASANGC------VPVMGEFLEKENMPHPNELFNNKGQ-NILHVAAKKGR-----DVSVTHILE-ASDLTDKLINEMDDDG  324 (626)
Q Consensus       258 A~~~g~------~~~v~~Ll~~g~~~~~~~~~d~~g~-t~Lh~A~~~~~-----~~i~~~Ll~-~~~~~~~~in~~d~~G  324 (626)
                      |+..|+      .+++++|+++|++++.   +|..|+ ||||+|+..+.     .+++++|++ .|    +++|.+|..|
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Gadin~---~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g----ad~~~~d~~G  154 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGADITA---LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG----LQLLIKDKWG  154 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCSSS---CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT----CCTTCCCTTS
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCCCCCc---cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC----CCCcccCCCC
Confidence            888776      4678888887765544   477788 88888887443     457888888 77    7888888888


Q ss_pred             CCHHHHHHHhCCHHHHHHHhhCCCCcccccc
Q 039828          325 NTPLHLAALYGHYFVAVILGKDGRAESDIIN  355 (626)
Q Consensus       325 ~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n  355 (626)
                      +||||+|+..++.+++++|.+.. .+.++++
T Consensus       155 ~TpL~~A~~~~~~~~v~~L~~~~-~~~~~~~  184 (186)
T 3t8k_A          155 LTALEFVKRCQKPIALKMMEDYI-KKYNLKE  184 (186)
T ss_dssp             CCHHHHHHTTTCHHHHHHHHHHH-HHHTCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHHH-HHHhccc
Confidence            88888888888888888887765 4444443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.87  E-value=2.7e-22  Score=177.34  Aligned_cols=131  Identities=19%  Similarity=0.119  Sum_probs=118.0

Q ss_pred             ccccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccch
Q 039828            5 FKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQI   84 (626)
Q Consensus         5 ~~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   84 (626)
                      ..+.+|.+|.||||+|+..|+   .+  ++++|++.+.+ ++.+|..|+||||+|+. |+.+++++|++++++++     
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~---~~--~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-----   71 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQ---VE--TVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-----   71 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTC---HH--HHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-----
T ss_pred             CccCCCCCCccHHHHHHHcCC---HH--HHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-----
Confidence            457788999999999999999   88  99999998765 88899999999999999 99999999999988763     


Q ss_pred             hhhHHHHhhccC-CCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHH
Q 039828           85 DVKFLMEMKNVR-GNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDI  163 (626)
Q Consensus        85 ~~~~~l~~~~~~-g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  163 (626)
                             .+|.. |.||||+|+.       .++          .+++++|++++++++ ..|..|.||||+|+..|+.++
T Consensus        72 -------~~~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~  126 (136)
T 1d9s_A           72 -------CADPATLTRPVHDAAR-------EGF----------LDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDI  126 (136)
T ss_dssp             -------CCBTTTTBCHHHHHHH-------HTC----------HHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHH
T ss_pred             -------CcCCCCCCCHHHHHHH-------cCC----------HHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHH
Confidence                   47888 9999999999       888          999999999999887 778899999999999999999


Q ss_pred             HHHHHHhCC
Q 039828          164 LEYILEALP  172 (626)
Q Consensus       164 v~~Ll~~~~  172 (626)
                      +++|+++++
T Consensus       127 ~~~Ll~~Ga  135 (136)
T 1d9s_A          127 ARYLHAATG  135 (136)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHcCC
Confidence            999998765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.87  E-value=3.9e-22  Score=180.79  Aligned_cols=143  Identities=9%  Similarity=0.001  Sum_probs=113.3

Q ss_pred             cccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCCh-HHHH
Q 039828          179 AKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLY-PFHL  257 (626)
Q Consensus       179 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-pLh~  257 (626)
                      .+..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+ .|+.+++++|++.+++ ++.+|..|.| |||+
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHD   84 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHH
Confidence            3456899999999999999999999887 678888999999999985 8999999999999988 8889999999 9999


Q ss_pred             HHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHH
Q 039828          258 ASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLA  331 (626)
Q Consensus       258 A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA  331 (626)
                      |+..|+.+++++|+++|.+++.   +|..|+||||+|+.+++.+++++|++.|    ++++.+|..|.||.+-+
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~---~d~~g~tpl~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDV---RDAWGRLPVDLAEELGHRDVARYLRAAA----GGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSC---CCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcc---cCCCCCCHHHHHHHhCHHHHHHHHHHcC----CCCCccCcCcCcccccC
Confidence            9999999999999998866544   5889999999999999999999999998    88999999999998744

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.87  E-value=5.3e-23  Score=191.93  Aligned_cols=149  Identities=13%  Similarity=0.024  Sum_probs=131.2

Q ss_pred             CCchhhHHhhCCCHHHHHHhhhcCCCcccccC-CCCChHHHHHHhcCCh----HHHHHHHhccCCCCCcccccCCCchHH
Q 039828          217 MNTPMHWAASVDHLEGVRFLYEINPDSVLQKN-EEGLYPFHLASANGCV----PVMGEFLEKENMPHPNELFNNKGQNIL  291 (626)
Q Consensus       217 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~----~~v~~Ll~~g~~~~~~~~~d~~g~t~L  291 (626)
                      ++++|+.|++.|+.+.++.++..+.+   ..+ ..|+||||+|+.+|+.    +++++|+++|++++.   +|..|+|||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~---~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~---~d~~g~TpL   79 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS---RTKEGTTLF   79 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS---CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC---CCTTCCCTH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc---cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC---CCCCCCcHH
Confidence            56899999999999999999987654   334 6799999999999975    599999998876655   489999999


Q ss_pred             HHHHHcCC------hHHHHHHHHcCCcchhhcccCCCCCC-CHHHHHHHhC-----CHHHHHHHhh-CCCCcccccccCC
Q 039828          292 HVAAKKGR------DVSVTHILEASDLTDKLINEMDDDGN-TPLHLAALYG-----HYFVAVILGK-DGRAESDIINFYG  358 (626)
Q Consensus       292 h~A~~~~~------~~i~~~Ll~~~~~~~~~in~~d~~G~-TpLhlA~~~~-----~~~iv~~Ll~-~g~~d~~~~n~~g  358 (626)
                      |+|+..++      .+++++|++.|    +++|.+|..|+ ||||+|+..+     +.+++++|++ .| ++++.+|..|
T Consensus        80 h~a~~~~~~~~~~~~~iv~~Ll~~G----adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~~~d~~G  154 (186)
T 3t8k_A           80 FPLFQGGGNDITGTTELCKIFLEKG----ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLLIKDKWG  154 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTT----CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTTCCCTTS
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHCC----CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCcccCCCC
Confidence            99999987      57899999998    99999999999 9999999954     4569999999 88 9999999999


Q ss_pred             CCHHHHHHHhcccccccc
Q 039828          359 QTAYDIAEQQYAKIIPEF  376 (626)
Q Consensus       359 ~tpl~la~~~~~~~i~~~  376 (626)
                      +||||+|.+.++.+++++
T Consensus       155 ~TpL~~A~~~~~~~~v~~  172 (186)
T 3t8k_A          155 LTALEFVKRCQKPIALKM  172 (186)
T ss_dssp             CCHHHHHHTTTCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHH
Confidence            999999999988777665

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.86  E-value=2.6e-21  Score=168.04  Aligned_cols=126  Identities=40%  Similarity=0.527  Sum_probs=103.7

Q ss_pred             CCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHH
Q 039828          216 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAA  295 (626)
Q Consensus       216 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~  295 (626)
                      +|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||.|+..|+.+++++|++.|.+++   .+|..|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~l~~A~   76 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAA   76 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc---ccCCCCCcHHHHHH
Confidence            477888888888888888888888776 66778888888888888888888888888765443   44778888888888


Q ss_pred             HcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCc
Q 039828          296 KKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAE  350 (626)
Q Consensus       296 ~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d  350 (626)
                      ..++.+++++|++.+    .+++.+|..|+||||+|+..++.+++++|+++| +|
T Consensus        77 ~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G-ad  126 (126)
T 1n0r_A           77 RNGHLEVVKLLLEAG----ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-AY  126 (126)
T ss_dssp             HTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CC
T ss_pred             HcChHHHHHHHHHcC----CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC-CC
Confidence            888888888888887    778888888899999999888999999888887 53

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.86  E-value=1.4e-21  Score=172.79  Aligned_cols=127  Identities=26%  Similarity=0.279  Sum_probs=105.1

Q ss_pred             cCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHH
Q 039828          213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH  292 (626)
Q Consensus       213 ~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh  292 (626)
                      ....+.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|.+++   .+|..|+||||
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~d~~g~t~L~   85 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN---AVDAIGFTPLH   85 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---CCCTTCCCHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCCHHH
Confidence            345677888888888888888888888877 77788888888888888888888888888765543   34778889999


Q ss_pred             HHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828          293 VAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG  347 (626)
Q Consensus       293 ~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g  347 (626)
                      +|+..++.+++++|++.+    ++++.+|.+|+||||+|+..++.+++++|++.|
T Consensus        86 ~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLKHG----ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHcCCHHHHHHHHHcC----CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999887    778888889999999999999999999888765

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.85  E-value=7.1e-21  Score=165.22  Aligned_cols=125  Identities=26%  Similarity=0.426  Sum_probs=109.5

Q ss_pred             CCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHH
Q 039828           12 SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLME   91 (626)
Q Consensus        12 ~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~   91 (626)
                      +|+||||+|+..|+   .+  ++++|++.+++ ++..|..|.||||+|+..|+.+++++|++.++++            +
T Consensus         1 ~g~t~L~~A~~~~~---~~--~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------~   62 (126)
T 1n0r_A            1 NGRTPLHLAARNGH---LE--VVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------------N   62 (126)
T ss_dssp             CCCCHHHHHHHHTC---HH--HHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT------------T
T ss_pred             CCccHHHHHHHcCc---HH--HHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC------------c
Confidence            58999999999999   88  99999998776 7888899999999999999999999999988765            3


Q ss_pred             hhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 039828           92 MKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEAL  171 (626)
Q Consensus        92 ~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  171 (626)
                      .+|..|.||||+|+.       .++          .+++++|+++++++. ..|..|.|||++|+..|+.+++++|++++
T Consensus        63 ~~~~~g~t~l~~A~~-------~~~----------~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           63 AKDKNGRTPLHLAAR-------NGH----------LEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             CCCTTSCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             ccCCCCCcHHHHHHH-------cCh----------HHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            477889999999998       888          899999999988887 67888999999999999999999999887


Q ss_pred             C
Q 039828          172 P  172 (626)
Q Consensus       172 ~  172 (626)
                      +
T Consensus       125 a  125 (126)
T 1n0r_A          125 A  125 (126)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.85  E-value=2.7e-21  Score=170.85  Aligned_cols=126  Identities=19%  Similarity=0.204  Sum_probs=98.3

Q ss_pred             ccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhH
Q 039828            9 TSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKF   88 (626)
Q Consensus         9 ~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~   88 (626)
                      ....|.|+||+||..|+   .+  ++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|+++|+++          
T Consensus        10 ~~~~~~t~l~~A~~~g~---~~--~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------   73 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQ---DD--EVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV----------   73 (136)
T ss_dssp             --CHHHHHHHHHHHHTC---HH--HHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT----------
T ss_pred             ccccccHHHHHHHHhCC---HH--HHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------
Confidence            44567888888888888   77  88888887765 7778888888888888888888888888887754          


Q ss_pred             HHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 039828           89 LMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYIL  168 (626)
Q Consensus        89 ~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  168 (626)
                        +.+|..|.||||+|+.       .++          .+++++|+++++++. ..|.+|.||||+|+..|+.+++++|+
T Consensus        74 --~~~d~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll  133 (136)
T 2jab_A           74 --NAVDAIGFTPLHLAAF-------IGH----------LEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQ  133 (136)
T ss_dssp             --TCCCTTCCCHHHHHHH-------HTC----------HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             --CcCCCCCCCHHHHHHH-------cCC----------HHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence              3467778888888887       777          888888888887776 66777888888888888888888887


Q ss_pred             Hh
Q 039828          169 EA  170 (626)
Q Consensus       169 ~~  170 (626)
                      +.
T Consensus       134 ~~  135 (136)
T 2jab_A          134 KL  135 (136)
T ss_dssp             HC
T ss_pred             Hc
Confidence            64

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=2.1e-21  Score=171.80  Aligned_cols=123  Identities=26%  Similarity=0.378  Sum_probs=92.7

Q ss_pred             ccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCC
Q 039828          246 QKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGN  325 (626)
Q Consensus       246 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~  325 (626)
                      .+|..|.||||.|+..|+.+++++|++.|.+++   .+|..|+||||+|+..++.+++++|++.+    ++++.+|..|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~   77 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN---VKDHAGWTPLHEACNHGHLKVVELLLQHK----ALVNTTGYQND   77 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCGGGC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CcccCcCCCCC
Confidence            466777777777777777777777777654443   34677788888888888888888888776    66777788888


Q ss_pred             CHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccccc
Q 039828          326 TPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF  376 (626)
Q Consensus       326 TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~  376 (626)
                      ||||+|+..++.+++++|++.| ++++.+|..|.||+|+|...+..++..+
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~l~~  127 (137)
T 3c5r_A           78 SPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLLLL  127 (137)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCHHHHHHHSC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhccHHHHHhh
Confidence            8888888888888888888777 7888888888888888777666555554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.83  E-value=4.3e-21  Score=169.71  Aligned_cols=128  Identities=20%  Similarity=0.237  Sum_probs=111.1

Q ss_pred             ccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHH
Q 039828          212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNIL  291 (626)
Q Consensus       212 ~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~L  291 (626)
                      .+|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|.+++   .+|..|+|||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L   80 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN---TTGYQNDSPL   80 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCGGGCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc---CcCCCCCCHH
Confidence            5788899999999999999999999998887 77889999999999999999999999999775543   4588899999


Q ss_pred             HHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828          292 HVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG  347 (626)
Q Consensus       292 h~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g  347 (626)
                      |+|+..++.+++++|++.|    ++++.+|..|+||||+|+..+..+++++|.+.+
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           81 HDAAKNGHVDIVKLLLSYG----ASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            9999999999999999998    788999999999999999988888888776654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.83  E-value=9.3e-21  Score=176.60  Aligned_cols=140  Identities=17%  Similarity=0.161  Sum_probs=97.4

Q ss_pred             cCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHH
Q 039828           10 SPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFL   89 (626)
Q Consensus        10 ~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~   89 (626)
                      +.+|+||||+|+..|+   .+  ++++|++ +. +++.+|..|+||||+|+..|+.+++++|+++|++++          
T Consensus        41 ~~~g~t~L~~A~~~g~---~~--~v~~Ll~-~~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------  103 (183)
T 3deo_A           41 VSEYETPWWTAARKAD---EQ--ALSQLLE-DR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD----------  103 (183)
T ss_dssp             HHHHHHHHHHHHHTTC---HH--HHHHHTT-TS-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------
T ss_pred             CCCCCCHHHHHHHcCC---HH--HHHHHHh-cC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------
Confidence            4567777777777777   66  7777777 43 367777777777777777777777777777776542          


Q ss_pred             HHhhc-cCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 039828           90 MEMKN-VRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYIL  168 (626)
Q Consensus        90 l~~~~-~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  168 (626)
                        .++ ..|+||||+|+.       .++          .+++++|++++++++ ..|..|+||||+|+..++.       
T Consensus       104 --~~~~~~g~tpL~~A~~-------~~~----------~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~-------  156 (183)
T 3deo_A          104 --HRDMRGGLTALHMAAG-------YVR----------PEVVEALVELGADIE-VEDERGLTALELAREILKT-------  156 (183)
T ss_dssp             --CCCSSSSCCHHHHHHH-------TTC----------HHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHT-------
T ss_pred             --cCCCCCCCCHHHHHHh-------cCc----------HHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccC-------
Confidence              244 667777777777       777          777777777777766 6677777777777653221       


Q ss_pred             HhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhc
Q 039828          169 EALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDK  205 (626)
Q Consensus       169 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  205 (626)
                                  ..+.++|++|+..|+.++++.|.++
T Consensus       157 ------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 ------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             ------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence                        1356677777777777777776543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=1.7e-20  Score=162.53  Aligned_cols=112  Identities=24%  Similarity=0.230  Sum_probs=89.9

Q ss_pred             CCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCH
Q 039828          248 NEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTP  327 (626)
Q Consensus       248 d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~Tp  327 (626)
                      +..|.||||.|+..|+.++++.|++.|.++   +.+|..|+||||+|+..++.+++++|++.+    +++|.+|..|+||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~d~~g~tp   76 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKG----ADINAPDKHHITP   76 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT---TSCCTTSSCHHHHHHHTTCHHHHHHHHTTT----CCTTCCCTTSCCH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc---CccCCCCCcHHHHHHHcCCHHHHHHHHHcC----CCCCcCCCCCCCH
Confidence            456778888888888888888888866443   345778888888888888888888888887    7788888888888


Q ss_pred             HHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHH
Q 039828          328 LHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQ  367 (626)
Q Consensus       328 LhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~  367 (626)
                      ||+|+..++.+++++|+++| ++++.+|.+|+||+|+|..
T Consensus        77 L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           77 LLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCC
T ss_pred             HHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHhCC
Confidence            88888888888888888887 8888888888888888843

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.82  E-value=1.5e-20  Score=183.83  Aligned_cols=109  Identities=21%  Similarity=0.175  Sum_probs=58.2

Q ss_pred             CCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHH
Q 039828           12 SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLME   91 (626)
Q Consensus        12 ~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~   91 (626)
                      +|+||||+||..|+   .+  ++++|++ +. +++.+|..|+||||+||..|+.++|++|+++|++++            
T Consensus        44 ~g~t~L~~A~~~g~---~~--~v~~Ll~-~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------------  104 (244)
T 3ui2_A           44 EYETPWWTAARKAD---EQ--ALSQLLE-DR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD------------  104 (244)
T ss_dssp             HHHHHHHHHHTTTC---HH--HHHHTTT-TC-CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT------------
T ss_pred             CCCCHHHHHHHcCC---HH--HHHHHHc-CC-CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------
Confidence            45555555555555   55  5555555 32 255555555555555555555555555555555432            


Q ss_pred             hhc-cCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHH
Q 039828           92 MKN-VRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVE  157 (626)
Q Consensus        92 ~~~-~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~  157 (626)
                      .++ ..|.||||+|+.       .++          .+++++|++++++++ ..|..|.||||+|+.
T Consensus       105 ~~~~~~g~t~L~~A~~-------~g~----------~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          105 HRDMRGGLTALHMAAG-------YVR----------PEVVEALVELGADIE-VEDERGLTALELARE  153 (244)
T ss_dssp             CCCSSSCCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHH-------cCC----------HHHHHHHHHCCCCCC-CCCCCCCcHHHHHHH
Confidence            133 445555555555       555          555555555555554 445555555555553

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.82  E-value=7.6e-21  Score=183.05  Aligned_cols=138  Identities=18%  Similarity=0.114  Sum_probs=110.7

Q ss_pred             ccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhc-cCCCCCcccccCCCchH
Q 039828          212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK-ENMPHPNELFNNKGQNI  290 (626)
Q Consensus       212 ~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~d~~g~t~  290 (626)
                      ..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++. |.+   .+.+|..|+||
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---~~~~d~~g~tp  143 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE---LNQQNKLGDTA  143 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC---CCCCCTTSCCH
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC---ccccCCCCCCH
Confidence            3567889999999999999999999999887 788899999999999999999999999986 544   44568999999


Q ss_pred             HHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCC
Q 039828          291 LHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYG  358 (626)
Q Consensus       291 Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g  358 (626)
                      ||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..++.++++.|++.+ ++.+..|.+|
T Consensus       144 L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~-~~~~~~~~~~  206 (222)
T 3ehr_A          144 LHAAAWKGYADIVQLLLAKG----ARTDLRNIEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAED  206 (222)
T ss_dssp             HHHHHHHTCHHHHHHHHHHT----CCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HHHHHHcCCHHHHHHHHHcC----CCCccccCCCCCHHHHhcchhHHHHHHHHhccc-hhhhccchhh
Confidence            99999999999999999998    889999999999999999999999999999998 7777776654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.82  E-value=1.6e-20  Score=174.97  Aligned_cols=109  Identities=20%  Similarity=0.214  Sum_probs=52.1

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccC-CCCChHHHHHHh
Q 039828          182 EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKN-EEGLYPFHLASA  260 (626)
Q Consensus       182 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~  260 (626)
                      .|.||||.|+..|+.++++.|++ + .+++.+|..|.||||+|+..|+.+++++|++.+++ ++..+ ..|.||||+|+.
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-T-SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-c-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHh
Confidence            34455555555555555555554 2 34444455555555555555555555555554444 33333 445555555555


Q ss_pred             cCChHHHHHHHhccCCCCCcccccCCCchHHHHHHH
Q 039828          261 NGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAK  296 (626)
Q Consensus       261 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~  296 (626)
                      .|+.+++++|+++|.+++   .+|..|+||||+|+.
T Consensus       120 ~~~~~~v~~Ll~~ga~~~---~~d~~g~tpl~~A~~  152 (183)
T 3deo_A          120 YVRPEVVEALVELGADIE---VEDERGLTALELARE  152 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTT---CCCTTSCCHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCCCc---CCCCCCCCHHHHHHH
Confidence            555555555554443332   224445555555543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=8e-20  Score=184.07  Aligned_cols=142  Identities=16%  Similarity=0.127  Sum_probs=120.7

Q ss_pred             CCCCchhhHHhhCCCHHHHHHhhhcCCCcccc------cCCCCChHHHHHHhc---CChHHHHHHHhccCCCCCcccccC
Q 039828          215 EQMNTPMHWAASVDHLEGVRFLYEINPDSVLQ------KNEEGLYPFHLASAN---GCVPVMGEFLEKENMPHPNELFNN  285 (626)
Q Consensus       215 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~d~  285 (626)
                      ..+.++|+.|+..|+.+.++.|++.+++ ++.      .+..|.||||+|+..   |+.+++++|+++|++++   .+|.
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn---~~d~  224 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD---AKAA  224 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT---CCCT
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC---CCCC
Confidence            3345789999999999999999999988 544      688999999999997   89999999999886554   4589


Q ss_pred             CCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHH
Q 039828          286 KGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA  365 (626)
Q Consensus       286 ~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la  365 (626)
                      .|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..++.+++++|++.| ++      .|.||||+|
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~g----ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g-a~------~g~tpLh~A  293 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGR----ALVGTVNEAGETALDIARKKHHKECEELLEQAQ-AG------TFAFPLHVD  293 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTT----CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HH------TTSSCCC--
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-CC------CCCChhHHH
Confidence            9999999999999999999999998    889999999999999999999999999999988 44      689999999


Q ss_pred             HHhccc
Q 039828          366 EQQYAK  371 (626)
Q Consensus       366 ~~~~~~  371 (626)
                      ++.|+.
T Consensus       294 ~~~g~~  299 (301)
T 2b0o_E          294 YSWVIS  299 (301)
T ss_dssp             ------
T ss_pred             HhcCCc
Confidence            987653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.81  E-value=5.2e-20  Score=159.46  Aligned_cols=113  Identities=19%  Similarity=0.172  Sum_probs=95.0

Q ss_pred             CCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHH
Q 039828          214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHV  293 (626)
Q Consensus       214 d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~  293 (626)
                      +..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|.+++   .+|..|+||||+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~d~~g~tpL~~   79 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN---APDKHHITPLLS   79 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT---CCCTTSCCHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCCHHHH
Confidence            46678899999999999999999998877 77888889999999999999999999998775543   458889999999


Q ss_pred             HHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHh
Q 039828          294 AAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALY  334 (626)
Q Consensus       294 A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~  334 (626)
                      |+..++.+++++|++.+    ++++.+|.+|+||||+|...
T Consensus        80 A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           80 AVYEGHVSCVKLLLSKG----ADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             HHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHCCCH
T ss_pred             HHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHhCCH
Confidence            99999999999999987    77888999999999998543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.81  E-value=1.3e-19  Score=182.53  Aligned_cols=140  Identities=17%  Similarity=0.102  Sum_probs=118.1

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhcCCccccc------cCCCCCchhhHHhhC---CCHHHHHHhhhcCCCcccccCCCCCh
Q 039828          183 GKSPVKVAIELQKLGLLKMMHDKQPALLLI------QDEQMNTPMHWAASV---DHLEGVRFLYEINPDSVLQKNEEGLY  253 (626)
Q Consensus       183 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~------~d~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t  253 (626)
                      ..++|+.|+..|+.+.++.|++.+ .+++.      .|..|.||||+|+..   |+.+++++|++.+++ ++..|..|.|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g-~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~T  228 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANG-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNT  228 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcC-CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCC
Confidence            456799999999999999999888 45555      688999999999987   899999999999988 8889999999


Q ss_pred             HHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHH
Q 039828          254 PFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAAL  333 (626)
Q Consensus       254 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~  333 (626)
                      |||+|+..|+.+++++|+++|++++   .+|..|+||||+|+..++.+++++|++.+    ++      .|.||||+|+.
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad~~---~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g----a~------~g~tpLh~A~~  295 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRALVG---TVNEAGETALDIARKKHHKECEELLEQAQ----AG------TFAFPLHVDYS  295 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCCS---CCCTTSCCHHHHHHHHTCHHHHHHHHHHH----HH------TTSSCCC----
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCC---CcCCCCCCHHHHHHHcCCHHHHHHHHHhc----CC------CCCChhHHHHh
Confidence            9999999999999999999887665   45899999999999999999999999987    33      58999999999


Q ss_pred             hCCH
Q 039828          334 YGHY  337 (626)
Q Consensus       334 ~~~~  337 (626)
                      +|+.
T Consensus       296 ~g~~  299 (301)
T 2b0o_E          296 WVIS  299 (301)
T ss_dssp             ----
T ss_pred             cCCc
Confidence            8864

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.81  E-value=6.9e-20  Score=179.02  Aligned_cols=140  Identities=19%  Similarity=0.181  Sum_probs=114.1

Q ss_pred             cCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccC-CCCChHHHHHH
Q 039828          181 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKN-EEGLYPFHLAS  259 (626)
Q Consensus       181 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~  259 (626)
                      ..|.||||.|+..|+.++++.|++ + .+++.+|..|.||||+|+..|+.+++++|++++++ ++..+ ..|.||||+|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-T-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-C-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHH
Confidence            357788888888888888888888 4 67788888889999999999999999999988887 55555 77899999999


Q ss_pred             hcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHH
Q 039828          260 ANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFV  339 (626)
Q Consensus       260 ~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~i  339 (626)
                      ..|+.+++++|+++|++++   .+|..|+||||+|+..++                     +..+.||||+|+..|+.++
T Consensus       120 ~~g~~~~v~~Ll~~ga~~~---~~d~~g~t~l~~A~~~~~---------------------~~~~~~~l~~a~~~g~~~i  175 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADIE---VEDERGLTALELAREILK---------------------TTPKGNPMQFGRRIGLEKV  175 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCTT---CCCTTCCCHHHHHHHHHT---------------------TCCCSSHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCC---CCCCCCCcHHHHHHHHHh---------------------ccCCCCHHHHHHHcChHHH
Confidence            9999999999998776554   458889999999986321                     2468899999999999999


Q ss_pred             HHHHhhCC
Q 039828          340 AVILGKDG  347 (626)
Q Consensus       340 v~~Ll~~g  347 (626)
                      +++|++.+
T Consensus       176 v~~L~~~~  183 (244)
T 3ui2_A          176 INVLEGQV  183 (244)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99998764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.79  E-value=4.5e-19  Score=176.51  Aligned_cols=192  Identities=18%  Similarity=0.181  Sum_probs=144.2

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhH
Q 039828          144 MNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHW  223 (626)
Q Consensus       144 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~  223 (626)
                      .|..+.++++++...|+..+.+++....+........ .+....    .....-..+++...........+....++|+.
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~-~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~  136 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPN-PGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCE  136 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCC-TTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCC-CCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence            5778899999999999987776665443321111111 111221    11112222333333322222222234578999


Q ss_pred             HhhCCCHHHHHHhhhcCCCc-----ccccCCCCChHHHHHHhc---CChHHHHHHHhccCCCCCcccccCCCchHHHHHH
Q 039828          224 AASVDHLEGVRFLYEINPDS-----VLQKNEEGLYPFHLASAN---GCVPVMGEFLEKENMPHPNELFNNKGQNILHVAA  295 (626)
Q Consensus       224 Aa~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~  295 (626)
                      |+..|+.+.++.+++.+.+.     .+..+..|.||||+|+..   |+.+++++|+++|++++   .+|..|+||||+|+
T Consensus       137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in---~~d~~g~TpLh~A~  213 (278)
T 1dcq_A          137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD---KQTGKGSTALHYCC  213 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT---CCCTTCCCHHHHHH
T ss_pred             HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc---ccCCCCCCHHHHHH
Confidence            99999999999999998874     233488899999999999   89999999999886654   45889999999999


Q ss_pred             HcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828          296 KKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG  347 (626)
Q Consensus       296 ~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g  347 (626)
                      .+|+.+++++|++.|    ++++.+|.+|+||||+|+..|+.+++++|+++|
T Consensus       214 ~~g~~~~v~~Ll~~g----ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          214 LTDNAECLKLLLRGK----ASIEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcC----CCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999998    889999999999999999999999999999988

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.77  E-value=4.1e-19  Score=170.84  Aligned_cols=124  Identities=19%  Similarity=0.199  Sum_probs=88.4

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhc-CCCcccccCCCCChHHHHHHh
Q 039828          182 EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEI-NPDSVLQKNEEGLYPFHLASA  260 (626)
Q Consensus       182 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~  260 (626)
                      .|.||||.|+..|+.++++.|++.+ .+++.+|..|.||||+|+..|+.+++++|++. +.+ ++..|..|.||||+|+.
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNR-VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccCcHHHHHHHHhCC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHHHHHHH
Confidence            4677777777777777777777766 55667777777888888888888888888777 555 67777778888888888


Q ss_pred             cCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcC
Q 039828          261 NGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEAS  310 (626)
Q Consensus       261 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~  310 (626)
                      .|+.+++++|+++|++++   .+|..|+||||+|+..++.++++.|++.+
T Consensus       150 ~~~~~~v~~Ll~~ga~~~---~~~~~g~t~l~~A~~~~~~~~l~~l~~~~  196 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTD---LRNIEKKLAFDMATNAACASLLKKKQGTD  196 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSC---CCCTTSCCHHHHCCSHHHHHHHC------
T ss_pred             cCCHHHHHHHHHcCCCCc---cccCCCCCHHHHhcchhHHHHHHHHhccc
Confidence            888888888887765544   34777888888888777777777777776

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.77  E-value=1.2e-17  Score=166.31  Aligned_cols=126  Identities=14%  Similarity=0.099  Sum_probs=96.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCC----ccccccCCCCHHHHHHHh---CCHHHHHHHHhcCCccccccCCCCCchh
Q 039828          149 KSPLYLAVESKNEDILEYILEALPVND----DCDAKLEGKSPVKVAIEL---QKLGLLKMMHDKQPALLLIQDEQMNTPM  221 (626)
Q Consensus       149 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~----~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  221 (626)
                      .++|+.|+..|+.+.++.+++.+....    ....+..|.||||.|+..   |+.+++++|++.+ .+++.+|..|.|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCCCCCCHH
Confidence            468888899999888888888876432    223355678888888887   7788888888777 66777777888888


Q ss_pred             hHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCC
Q 039828          222 HWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENM  276 (626)
Q Consensus       222 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~  276 (626)
                      |+|+..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            888888888888888887777 777777888888888888888888888876654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.76  E-value=1.6e-18  Score=178.66  Aligned_cols=148  Identities=18%  Similarity=0.116  Sum_probs=115.7

Q ss_pred             cCCCCCchhhHHhhC-CCHHHHHHhhhcCCCcccccC--CCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCch
Q 039828          213 QDEQMNTPMHWAASV-DHLEGVRFLYEINPDSVLQKN--EEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQN  289 (626)
Q Consensus       213 ~d~~g~tpLh~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t  289 (626)
                      .+..+.|+||.|+.. |+.++++.|++.+++ ++..+  ..|.||||+|+..|+.+++++|+++|.+++   .+|..|+|
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn---~~d~~G~T  270 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN---QADSAGRG  270 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCC
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC---CCCCCCCC
Confidence            345567899999999 999999999999988 67677  899999999999999999999999876554   45899999


Q ss_pred             HHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCC--CcccccccCCCCHHHHHHH
Q 039828          290 ILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGR--AESDIINFYGQTAYDIAEQ  367 (626)
Q Consensus       290 ~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~--~d~~~~n~~g~tpl~la~~  367 (626)
                      |||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..++.+++++|+..+.  .+....+..+.|+++++..
T Consensus       271 pLh~A~~~g~~~~v~~LL~~G----ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          271 PLHHATILGHTGLACLFLKRG----ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             HHHHHHHcCcHHHHHHHHHCc----CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            999999999999999999998    8899999999999999999999999999997652  3445667788999999876


Q ss_pred             h
Q 039828          368 Q  368 (626)
Q Consensus       368 ~  368 (626)
                      .
T Consensus       347 ~  347 (368)
T 3jue_A          347 F  347 (368)
T ss_dssp             -
T ss_pred             H
Confidence            5

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.74  E-value=7.9e-18  Score=137.76  Aligned_cols=91  Identities=38%  Similarity=0.526  Sum_probs=74.4

Q ss_pred             CCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHH
Q 039828          250 EGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLH  329 (626)
Q Consensus       250 ~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLh  329 (626)
                      +|+||||+|+..|+.+++++|++.|.+++   .+|..|+||||+|+.+++.+++++|++.|    ++++.+|.+|+||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n---~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~t~l~   73 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAG----ADVNAKDKNGRTPLH   73 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCc---ccCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCccCCCCCCHHH
Confidence            47788888888888888888888765443   45778888888888888888888888887    778888888888888


Q ss_pred             HHHHhCCHHHHHHHhhCC
Q 039828          330 LAALYGHYFVAVILGKDG  347 (626)
Q Consensus       330 lA~~~~~~~iv~~Ll~~g  347 (626)
                      +|+..|+.+++++|++.|
T Consensus        74 ~A~~~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           74 LAARNGHLEVVKLLLEAG   91 (93)
T ss_dssp             HHHHTTCHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHcC
Confidence            888888888888888887

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.73  E-value=3.2e-18  Score=146.15  Aligned_cols=109  Identities=28%  Similarity=0.373  Sum_probs=91.7

Q ss_pred             ccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCC
Q 039828          246 QKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGN  325 (626)
Q Consensus       246 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~  325 (626)
                      .+|.+|.||||.|+..|+.+++++|+++|.++   +.+|..|+||||+|+..++.+++++|++.+    ++++.+|..|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~d~~g~   76 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV---NARSKDGNTPLHLAAKNGHAEIVKLLLAKG----ADVNARSKDGN   76 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS---SCCCSSSCCTTHHHHTTTCHHHHHHHTTTT----CCTTCCCTTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHHcC----CCCcccCCCCC
Confidence            46778888888888888888888888876543   345788899999999999999999999887    77888999999


Q ss_pred             CHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHH
Q 039828          326 TPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAY  362 (626)
Q Consensus       326 TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl  362 (626)
                      ||||+|+..++.+++++|+++| +++|.++..|.||-
T Consensus        77 tpl~~A~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~  112 (115)
T 2l6b_A           77 TPEHLAKKNGHHEIVKLLDAKG-ADVNARSWGSSHHH  112 (115)
T ss_dssp             CTTHHHHTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred             CHHHHHHHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence            9999999999999999999998 99999999998874

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.73  E-value=1.1e-17  Score=137.00  Aligned_cols=93  Identities=28%  Similarity=0.432  Sum_probs=84.8

Q ss_pred             CCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHH
Q 039828           12 SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLME   91 (626)
Q Consensus        12 ~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~   91 (626)
                      +|+||||+|+..|+   .+  ++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|+++|+++            +
T Consensus         1 ~g~t~L~~A~~~~~---~~--~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------------~   62 (93)
T 1n0q_A            1 NGRTPLHLAARNGH---LE--VVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------------N   62 (93)
T ss_dssp             --CCHHHHHHHHTC---HH--HHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------T
T ss_pred             CCCcHHHHHHHcCC---HH--HHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------C
Confidence            58999999999999   88  99999999876 8999999999999999999999999999999876            3


Q ss_pred             hhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCC
Q 039828           92 MKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPN  139 (626)
Q Consensus        92 ~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~  139 (626)
                      .+|.+|+||||+|+.       .++          .+++++|+++|++
T Consensus        63 ~~d~~g~t~l~~A~~-------~~~----------~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           63 AKDKNGRTPLHLAAR-------NGH----------LEVVKLLLEAGAY   93 (93)
T ss_dssp             CCCTTSCCHHHHHHH-------TTC----------HHHHHHHHHTTCC
T ss_pred             ccCCCCCCHHHHHHH-------cCC----------HHHHHHHHHcCCC
Confidence            488999999999999       999          9999999998864

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.73  E-value=1.5e-17  Score=171.39  Aligned_cols=148  Identities=18%  Similarity=0.127  Sum_probs=92.2

Q ss_pred             CCCCHHHHHHHh-CCHHHHHHHHhcCCccccccC--CCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHH
Q 039828          182 EGKSPVKVAIEL-QKLGLLKMMHDKQPALLLIQD--EQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLA  258 (626)
Q Consensus       182 ~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  258 (626)
                      .+.|+||.|+.. ++.++++.|++.+ .+++..|  ..|.||||+|+..|+.+++++|++++++ ++..|..|.||||+|
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~G-advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~A  275 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHG-ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHA  275 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTT-CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcC-CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHH
Confidence            455677777777 7777777777776 5566666  6777777777777777777777777776 667777777888888


Q ss_pred             HhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhC
Q 039828          259 SANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYG  335 (626)
Q Consensus       259 ~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~  335 (626)
                      +..|+.+++++|+++|++++   .+|..|+||||+|+..++.+++++|++.+.. .......+..+.|+++++....
T Consensus       276 ~~~g~~~~v~~LL~~Gad~~---~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~-~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADLG---ARDSEGRDPLTIAMETANADIVTLLRLAKMR-EAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             HHcCcHHHHHHHHHCcCCCC---CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-cccccccCCCCCCHHHHHHHHH
Confidence            77777888877777665543   3477777888888877777787777766422 2444455667778877776553

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.69  E-value=3e-17  Score=140.05  Aligned_cols=109  Identities=26%  Similarity=0.291  Sum_probs=88.8

Q ss_pred             ccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHH
Q 039828          212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNIL  291 (626)
Q Consensus       212 ~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~L  291 (626)
                      .+|.+|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|.+++   .+|..|+|||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~d~~g~tpl   79 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN---ARSKDGNTPE   79 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT---CCCTTCCCTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc---ccCCCCCCHH
Confidence            4678888888888888888888888888877 77788888888888888888888888888765543   4578888999


Q ss_pred             HHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHH
Q 039828          292 HVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPL  328 (626)
Q Consensus       292 h~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpL  328 (626)
                      |+|+..++.+++++|++.|    +++|.++..|.||-
T Consensus        80 ~~A~~~~~~~~~~~Ll~~g----a~~n~~~~~~~~~~  112 (115)
T 2l6b_A           80 HLAKKNGHHEIVKLLDAKG----ADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHHTTTCHHHHHHHHTTS----SSHHHHSCCCC---
T ss_pred             HHHHHCCCHHHHHHHHHcC----CCCCcCCccccccc
Confidence            9999888899999998888    78888888888773

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.60  E-value=1.2e-15  Score=128.99  Aligned_cols=86  Identities=30%  Similarity=0.411  Sum_probs=46.1

Q ss_pred             cCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHH
Q 039828          284 NNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYD  363 (626)
Q Consensus       284 d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~  363 (626)
                      |.+|+|+||+|+..|+.+++++|++.+    .++|.+|..|+||||+|+..|+.+++++|++.| ++++.+|..|+||+|
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g----~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANG----ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTAFD   95 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcC----CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCcHHH
Confidence            445555555555555555555555554    445555555555555555555555555555555 555555555555555


Q ss_pred             HHHHhcccccc
Q 039828          364 IAEQQYAKIIP  374 (626)
Q Consensus       364 la~~~~~~~i~  374 (626)
                      +|+..++.+++
T Consensus        96 ~A~~~~~~~~~  106 (110)
T 2zgd_A           96 ISIDNGNEDLA  106 (110)
T ss_dssp             HHHHHTCHHHH
T ss_pred             HHHHcCCHHHH
Confidence            55555444433

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.59  E-value=3.7e-15  Score=125.91  Aligned_cols=93  Identities=20%  Similarity=0.149  Sum_probs=74.4

Q ss_pred             ccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCC
Q 039828          244 VLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDD  323 (626)
Q Consensus       244 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~  323 (626)
                      ....|.+|.||||.|+..|+.+++++|++.|.++   +.+|..|+||||+|+.+|+.+++++|++.|    ++++.+|..
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i---~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g----a~~~~~d~~   89 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV---AAKDKNGSTPLHLAARNGHLEVVKLLLEAG----ADVXAQDKF   89 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTT
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCccccccC
Confidence            4456778888888888888888888888876544   344788889999999989999999998887    778888889


Q ss_pred             CCCHHHHHHHhCCHHHHHHH
Q 039828          324 GNTPLHLAALYGHYFVAVIL  343 (626)
Q Consensus       324 G~TpLhlA~~~~~~~iv~~L  343 (626)
                      |+||||+|+..++.+++++|
T Consensus        90 g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           90 GKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             SCCHHHHHHHHTCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHh
Confidence            99999999999999988876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	626
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.001
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.003
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	3e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (245), Expect = 8e-23
 Identities = 77/365 (21%), Positives = 137/365 (37%), Gaps = 25/365 (6%)

Query: 8   ITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQT 67
           +++    T LH+AA      H  +A       +    +  +     TPLH AAR G    
Sbjct: 28  VSNVKVETPLHMAAR---AGHTEVAK---YLLQNKAKVNAKAKDDQTPLHCAARIGHTNM 81

Query: 68  AKILVD--CAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTS 125
            K+L++      + +++      +   +             A Q     K          
Sbjct: 82  VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAK 141

Query: 126 LDSL--ARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAK-LE 182
              +  A  L+  D + +     +  +PL++AV   N DI++ +L          +    
Sbjct: 142 YGKVRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPR---GGSPHSPAWN 197

Query: 183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 242
           G +P+ +A +  ++ + + +     +    +  Q  TP+H AA   H E V         
Sbjct: 198 GYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVAL-LLSKQA 255

Query: 243 SVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVS 302
           +    N+ GL P HL +  G VPV    ++   M          G   LHVA+  G    
Sbjct: 256 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA---TTRMGYTPLHVASHYGN--- 309

Query: 303 VTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAY 362
              +++        +N     G +PLH AA  GH  +  +L K+G A  + ++  G T  
Sbjct: 310 -IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPL 367

Query: 363 DIAEQ 367
            IA++
Sbjct: 368 AIAKR 372

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (211), Expect = 2e-18
 Identities = 77/347 (22%), Positives = 127/347 (36%), Gaps = 48/347 (13%)

Query: 15  TLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDC 74
           T LH+A+      H  +        +      + N K +TPLH+AAR G  + AK L+  
Sbjct: 2   TPLHVASF---MGHLPIV---KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN 55

Query: 75  AKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLV 134
                   +  V      K     T LH A      A+       +            L+
Sbjct: 56  --------KAKV----NAKAKDDQTPLHCA------ARIGHTNMVKL-----------LL 86

Query: 135 SEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQ 194
             + N +        +PL++A    + + +  +LE          K  G +P+ VA +  
Sbjct: 87  ENNANPNLATT-AGHTPLHIAAREGHVETVLALLEKEASQACMTKK--GFTPLHVAAKYG 143

Query: 195 KLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYP 254
           K+ + +++ ++  A      +   TP+H A   ++L+ V+ L              G  P
Sbjct: 144 KVRVAELLLERD-AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTP 201

Query: 255 FHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTD 314
            H+A+    V V    L+           + +G   LH+AA++G       ++       
Sbjct: 202 LHIAAKQNQVEVARSLLQ---YGGSANAESVQGVTPLHLAAQEGH----AEMVALLLSKQ 254

Query: 315 KLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTA 361
              N  +  G TPLHL A  GH  VA +L K G    D     G T 
Sbjct: 255 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTP 300

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 6e-11
 Identities = 41/179 (22%), Positives = 60/179 (33%), Gaps = 34/179 (18%)

Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278
           TP+H A+ + HL  V+ L +         N +   P H+A+  G   V    L+ +   +
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 279 PNELFNNKGQNILHVAAKKGRDVSVTHILEA----------------------------- 309
                    Q  LH AA+ G    V  +LE                              
Sbjct: 61  ---AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 117

Query: 310 SDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368
               +     M   G TPLH+AA YG   VA +L +   A  +     G T   +A   
Sbjct: 118 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGLTPLHVAVHH 175

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 74.5 bits (182), Expect = 4e-15
 Identities = 37/327 (11%), Positives = 76/327 (23%), Gaps = 47/327 (14%)

Query: 40  KYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLME--MKNVRG 97
                +   + K    + +     M Q  ++L          ++   +   +   K ++ 
Sbjct: 34  ANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLC---LYYAHYNRNAKQLWSDAHKKGIKS 90

Query: 98  NTALHEA-----------LNALQDAKKDKNKPKEDGVTSL--------DSLARSLVSEDP 138
                 A           L  L  + +     + +   +           +   L    P
Sbjct: 91  EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 150

Query: 139 NASYLMNVDC-KSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLG 197
                M          LA E+ +  +L  + E  P       + E     + A       
Sbjct: 151 TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV----- 205

Query: 198 LLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHL 257
                H      LL     +                 F+          + +E    F L
Sbjct: 206 --GRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHV-----NRLKEMHDAFKL 258

Query: 258 ASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKL 316
           ++ +G   ++              L        L     +     +  +L          
Sbjct: 259 SNPDGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 309

Query: 317 INEMDDDGNTPLHLAALYGHYFVAVIL 343
              +  D N  L LA   G+     +L
Sbjct: 310 TATIPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 53.4 bits (127), Expect = 4e-08
 Identities = 24/159 (15%), Positives = 46/159 (28%), Gaps = 10/159 (6%)

Query: 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPV---MG 268
           I++ + +  +     +      +     N  S++  + +      L        V   + 
Sbjct: 7   IENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLC 66

Query: 269 EFLEKENMPHPNELF-----NNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDD 323
            +    N               K + I  VAA  G   S    L     +D+++  +  +
Sbjct: 67  LYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITG-CSSALDTLCLLLTSDEIVKVIQAE 125

Query: 324 GNTPLHLAALYGHYFVAVILGKDG-RAESDIINFYGQTA 361
                 LAA  GH  V   L +        +I      A
Sbjct: 126 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA 164

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.1 bits (116), Expect = 8e-07
 Identities = 27/231 (11%), Positives = 55/231 (23%), Gaps = 21/231 (9%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
                 +AA      H ++            ++ M  ++      +AA +G L     L 
Sbjct: 126 NYQAFRLAAE---NGHLHVLNRL-CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC 181

Query: 73  DCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARS 132
           + A    ++      +        G       +N L D        +       +     
Sbjct: 182 ELAPTEATAMIQAENYYAFRWAAVGRGHH-NVINFLLDCPVMLAYAEIHEFEYGEKY--- 237

Query: 133 LVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIE 192
            V+           +      L+      D++           +C         +    +
Sbjct: 238 -VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT--------KSECLQGFYMLRNLIRRND 288

Query: 193 LQKLG----LLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEI 239
              L     LL +   K  A         N  +  A  + +      L  I
Sbjct: 289 EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 21/183 (11%), Positives = 55/183 (30%), Gaps = 12/183 (6%)

Query: 180 KLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY-- 237
             E    +++   +    L +         L+    +    +    + +  +  + L   
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLY 68

Query: 238 --EINPDS------VLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQN 289
               N ++        +K  +      +A+  GC   +             ++   +   
Sbjct: 69  YAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQ 128

Query: 290 ILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRA 349
              +AA+ G    +  + E +    +++  +  +      LAA  GH  V   L +    
Sbjct: 129 AFRLAAENGHLHVLNRLCELAP--TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 186

Query: 350 ESD 352
           E+ 
Sbjct: 187 EAT 189

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.2 bits (178), Expect = 8e-15
 Identities = 40/247 (16%), Positives = 90/247 (36%), Gaps = 31/247 (12%)

Query: 124 TSLDSLARSLVSEDPNASYLMNV----DCKSPLYLAVESKNEDILEYILEA-LPVNDDCD 178
            S DSL + +    PN    +N+       +PL+      N ++++++++         +
Sbjct: 79  VSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN 138

Query: 179 AKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE 238
                      ++     G  + + D     L+++D    T +H       + G      
Sbjct: 139 MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG------ 192

Query: 239 INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKG 298
                              A+A   + ++  ++ K+    P +   N+ ++  +    + 
Sbjct: 193 -----------------CSAAAKYYLDILMGWIVKKQ-NRPIQSGTNEKESKPNDKNGER 234

Query: 299 RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYG 358
           +D S+   L+   +   ++N  D +G+T L++AA  G+  +   L   G A+  I N  G
Sbjct: 235 KD-SILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSG 292

Query: 359 QTAYDIA 365
               D  
Sbjct: 293 LRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.9 bits (141), Expect = 5e-10
 Identities = 37/209 (17%), Positives = 65/209 (31%), Gaps = 14/209 (6%)

Query: 50  SKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQ 109
             G+TPLH       L+  K LV           +    L++      N         L 
Sbjct: 105 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 164

Query: 110 DAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169
                         T L  +   + S     S          +   V+ +N  I      
Sbjct: 165 YLYPCLILEDSMNRTILHHII--ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS---- 218

Query: 170 ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDH 229
                ++ ++K   K+  +    L+ L L  ++      +L  QD   +T ++ AA + +
Sbjct: 219 ---GTNEKESKPNDKNGERKDSILENLDLKWIIA----NMLNAQDSNGDTCLNIAARLGN 271

Query: 230 LEGVRFLYEINPDSVLQKNEEGLYPFHLA 258
           +  V  L +   D     N+ GL P    
Sbjct: 272 ISIVDALLDYGAD-PFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 23/173 (13%), Positives = 57/173 (32%), Gaps = 5/173 (2%)

Query: 167 ILEALP--VNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWA 224
           I++ALP  V +D + K++ ++ ++  +  +   +   +++                 H +
Sbjct: 21  IMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVS 80

Query: 225 ASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFN 284
                 E          +  +  +E G  P H  ++   + ++   ++  +        +
Sbjct: 81  FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL---YGD 137

Query: 285 NKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHY 337
           N G++ L  A K   +          D     +   D    T LH   +    
Sbjct: 138 NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM 190

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 15/93 (16%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKIL 71
              +  +          +++     L      ++  Q+S GDT L++AAR G +     L
Sbjct: 222 EKESKPNDKNGE---RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 278

Query: 72  VDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
           +            D      + N  G   +   
Sbjct: 279 L--------DYGADP----FIANKSGLRPVDFG 299

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 71.3 bits (173), Expect = 3e-14
 Identities = 41/285 (14%), Positives = 94/285 (32%), Gaps = 43/285 (15%)

Query: 17  LHIAAAGSIRNHENMAMATTLARKYPFLITMQNSK-GDTPLHVAARDGMLQTAKILVDCA 75
           LH  AAGS       A+   + R+    + + + +   T LH  A +   + ++ L+   
Sbjct: 6   LHTEAAGSY------AITEPITRE---SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHE 56

Query: 76  KRMTSSSQIDVKFLMEMKNVRGNTALHEA-------------------LNALQDAKKDKN 116
            +   ++  DV       +   NT L  A                       +  +   +
Sbjct: 57  AKECIAAGADV----NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALH 112

Query: 117 KPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYIL-------- 168
           +   +    +     +      +   L      + + +A     + +    L        
Sbjct: 113 QAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 172

Query: 169 EALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVD 228
           +          K +G++ +  A ++  + ++K +  ++ +    QDE   TP+  AA   
Sbjct: 173 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG 232

Query: 229 HLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
            +E V +L +     V   +        LA AN    ++ +  ++
Sbjct: 233 RIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIV-DIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 39/260 (15%), Positives = 92/260 (35%), Gaps = 29/260 (11%)

Query: 127 DSLARSLVSEDPNASYLMNVDCK---SPLYLAVESKNEDILEYILEALPVN------DDC 177
            ++   +  E  N      +D +   + L+    + + +  E ++            D  
Sbjct: 14  YAITEPITRESVNI-----IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN 68

Query: 178 DAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY 237
               +  +P+ +A+  ++  L+  +         I ++   + +H AA+      + ++ 
Sbjct: 69  AMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYML 127

Query: 238 E--INPDSVLQKNEEGLYPFHLASANG--------CVPVMGEFLEKENMPHPNELFNNKG 287
                   + + +  G+    + + N          + V        +     +    KG
Sbjct: 128 NSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG 187

Query: 288 QNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347
           +  LH AA+      V ++           ++ D+DG TP+ LAA  G   V + L + G
Sbjct: 188 RTALHYAAQVSNMPIVKYL---VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 244

Query: 348 RAESDIINFYGQTAYDIAEQ 367
            A  + ++    TA  +A+ 
Sbjct: 245 -ASVEAVDATDHTARQLAQA 263

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 17/99 (17%)

Query: 6   KTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGML 65
           K      G T LH           NM +   L  +       Q+  G TP+ +AA++G +
Sbjct: 180 KDSEKYKGRTALHY-----AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI 234

Query: 66  QTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA 104
           +    L+             V    E  +   +TA   A
Sbjct: 235 EVVMYLI--------QQGASV----EAVDATDHTARQLA 261

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 6/62 (9%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
           G T + +AA         + M      +    +   ++   T   +A  +       I  
Sbjct: 221 GKTPIMLAAQ---EGRIEVVM---YLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

Query: 73  DC 74
            C
Sbjct: 275 RC 276

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (172), Expect = 5e-14
 Identities = 52/304 (17%), Positives = 100/304 (32%), Gaps = 46/304 (15%)

Query: 51  KGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQD 110
           + +  L  A ++  +   + L++        + ++ +     +   G T LH A      
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEG------GANVNFQ-----EEEGGWTPLHNA------ 46

Query: 111 AKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEA 170
            +  +    E            L+        L   +  +P  LA  + +  +L+  L  
Sbjct: 47  VQMSREDIVE------------LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94

Query: 171 LPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMH---------DKQPALLLIQDEQMNTPM 221
               ++CD    G +    A    K+  LK ++          K         +   T +
Sbjct: 95  GADVNECDFY--GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152

Query: 222 HWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK--ENMPHP 279
             AA   H+E ++ L +     V   +  G      A  +     +        ++    
Sbjct: 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212

Query: 280 NELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFV 339
           N     +G+  L +A +K     V  +LE   +    IN+ D DG T L LA       +
Sbjct: 213 NVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKI 268

Query: 340 AVIL 343
           A +L
Sbjct: 269 AELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (172), Expect = 5e-14
 Identities = 57/280 (20%), Positives = 93/280 (33%), Gaps = 31/280 (11%)

Query: 95  VRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYL 154
           V  N  L +A       + +           +D L + L+    N ++       +PL+ 
Sbjct: 3   VEDNHLLIKA------VQNE----------DVD-LVQQLLEGGANVNFQEEEGGWTPLHN 45

Query: 155 AVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQD 214
           AV+   EDI+E +L                  +       KL  L +            D
Sbjct: 46  AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN---ECD 102

Query: 215 EQMNTPMHWAASVDHLEGVRFLYEINPDS---------VLQKNEEGLYPFHLASANGCVP 265
               T    AA    ++ ++FLY+   +            +  + G      A+  G V 
Sbjct: 103 FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 162

Query: 266 VMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGN 325
           V+ + L  E     N   +N G+N L  A     D  V  I          +N   + G 
Sbjct: 163 VL-KILLDEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220

Query: 326 TPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
           TPL LA    H  +   L +    E +  +  G+TA  +A
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 2e-13
 Identities = 38/284 (13%), Positives = 83/284 (29%), Gaps = 36/284 (12%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
            N LL  A       +E++ +   L      +   +   G TPLH A +       ++L+
Sbjct: 5   DNHLLIKAVQ-----NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 73  DCAKRMTSSS---------------------QIDVKFLMEMKNVRGNTALHEALNALQDA 111
                                           +     +   +  G TA  EA    +  
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 112 KKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEAL 171
                  +   V            +       +     + L  A E  + ++L+ +L+ +
Sbjct: 120 ALKFLYKRGANVNLRR--------KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171

Query: 172 PVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHD--KQPALLLIQDEQMNTPMHWAASVDH 229
             + +    +   + +   +      +  + H      A + ++ E+  TP+  A    H
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231

Query: 230 LEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273
           L  V+ L E     +   + +G     LA       +     ++
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 8e-11
 Identities = 41/203 (20%), Positives = 78/203 (38%), Gaps = 10/203 (4%)

Query: 179 AKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYE 238
           A +E    +  A++ + + L++ + +    +   ++E   TP+H A  +   + V  L  
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE-LLL 59

Query: 239 INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKG 298
            +    + + + G  PF LA+  G V ++  FL K    +     +  G      AA  G
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE---CDFYGFTAFMEAAVYG 116

Query: 299 RDVSVTHILEAS------DLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD 352
           +  ++  + +          T +    +   G T L  AA  GH  V  IL  +  A+ +
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 353 IINFYGQTAYDIAEQQYAKIIPE 375
             +  G+ A   A         E
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVE 199

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.4 bits (150), Expect = 2e-11
 Identities = 41/261 (15%), Positives = 78/261 (29%), Gaps = 22/261 (8%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
           G+T LH+A    I  HE               + +QN  G T LH+AA  G   T + L 
Sbjct: 9   GDTALHLAV---IHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 73  DCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARS 132
                +     +  +      ++      H     L   +    +   D   +       
Sbjct: 66  AAGAGV----LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT------- 114

Query: 133 LVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIE 192
                  +         +P  +  +   E+  E   E   +  +     +G +P+ VA+ 
Sbjct: 115 ------QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA-ENYDGHTPLHVAVI 167

Query: 193 LQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGL 252
            +   +++++ D    L   +     TP+H A        +  L +   D    +   G 
Sbjct: 168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGR 226

Query: 253 YPFHLASANGCVPVMGEFLEK 273
            P   A       +       
Sbjct: 227 TPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 5e-10
 Identities = 45/301 (14%), Positives = 83/301 (27%), Gaps = 58/301 (19%)

Query: 44  LITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHE 103
           +       GDT LH+A           L+           +D++      N  G TALH 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLG---FSAGHEYLDLQ------NDLGQTALHL 51

Query: 104 ALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDI 163
           A                      ++     +        +      + L+LA   +    
Sbjct: 52  A------------------AILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTC 93

Query: 164 LEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHW 223
              +L+  P +    +                   L    D  P            P   
Sbjct: 94  ACVLLQPRPSHPRDASD----------------TYLTQSQDCTPDTSH-------APAAV 130

Query: 224 AASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELF 283
            +  +         E     +  +N +G  P H+A  +    ++    +     +     
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP--E 188

Query: 284 NNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAALYGHYFVAVI 342
              G+  LH+A +      +  +L+A +D            G TPL  A L  +  +A +
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAGAD-----PTARMYGGRTPLGSALLRPNPILARL 243

Query: 343 L 343
           L
Sbjct: 244 L 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 42/227 (18%), Positives = 74/227 (32%), Gaps = 10/227 (4%)

Query: 147 DCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLE-GKSPVKVAIELQKLGLLKMMHDK 205
           D  + L+LAV  ++E  L+++L     ++  D + + G++ + +A  L +          
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST-VEKLYA 66

Query: 206 QPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFH-------LA 258
             A +L+ +   +T +H A  V        L +  P      ++  L            A
Sbjct: 67  AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126

Query: 259 SANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLIN 318
            A        E  E+            +  +                +    D    L  
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186

Query: 319 EMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
                G TPLHLA       V  +L K G A+     + G+T    A
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSA 232

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 247 KNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHI 306
             E+G    HLA  +   P +   L         +L N+ GQ  LH+AA  G   +V  +
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 307 LEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAE 366
                     +   +  G+T LHLA     +  A +L +   +     +    T      
Sbjct: 65  YA----AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 367 QQYAKIIPEFSENDDDMMTLLVLLIVYIRD 396
              +          +           +   
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQ 150

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (99), Expect = 5e-05
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 316 LINEMDDDGNTPLHLAALYGHYFVAVILGKDG--RAESDIINFYGQTAYDIA 365
           +   + +DG+T LHLA ++ H      L          D+ N  GQTA  +A
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 3e-10
 Identities = 37/220 (16%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 126 LDSLARSLVSE--DPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEG 183
           L+ L  S++++      +   + D ++ L+ A  + + +I+E++L+     +D D     
Sbjct: 16  LEELKESILADKSLATRT---DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWS 72

Query: 184 KSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDS 243
              +  +    ++    +      A +   ++   TP+H+AAS +  E    L E   + 
Sbjct: 73  PLHIAASAGRDEIVKALLGKG---AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN- 128

Query: 244 VLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSV 303
              K+       H A+A G + ++              + + +G   LH+A  + R    
Sbjct: 129 PDAKDHYEATAMHRAAAKGNLKMIHIL---LYYKASTNIQDTEGNTPLHLACDEERVEEA 185

Query: 304 THILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
             ++         I   + +  TPL +A   G   +   +
Sbjct: 186 KLLVSQ----GASIYIENKEEKTPLQVAK-GGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 1e-09
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 8/144 (5%)

Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
           N  +   A    LE ++     +     + +++     H A + G   ++   L+     
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 278 HPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHY 337
           +  +       +I               I++A       +N ++ +G TPLH AA    +
Sbjct: 64  NDKDDAGWSPLHIAA-------SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRH 116

Query: 338 FVAVILGKDGRAESDIINFYGQTA 361
            +AV+L + G A  D  + Y  TA
Sbjct: 117 EIAVMLLEGG-ANPDAKDHYEATA 139

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 2e-08
 Identities = 48/229 (20%), Positives = 79/229 (34%), Gaps = 15/229 (6%)

Query: 148 CKSPL---YLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHD 204
           C S L    LA   K E++ E IL    +    D   + ++ +  A       +++ +  
Sbjct: 1   CVSNLMVCNLAYSGKLEELKESILADKSLATRTDQ--DSRTALHWACSAGHTEIVEFLLQ 58

Query: 205 KQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCV 264
               +    D   +     A++         L       V   N+ G  P H A++    
Sbjct: 59  LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG--KGAQVNAVNQNGCTPLHYAASKNRH 116

Query: 265 PVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDG 324
            +    LE    P   +  ++     +H AA KG    +  +           N  D +G
Sbjct: 117 EIAVMLLEGGANP---DAKDHYEATAMHRAAAKGNLKMIHIL----LYYKASTNIQDTEG 169

Query: 325 NTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKII 373
           NTPLHLA        A +L   G A   I N   +T   +A+     I+
Sbjct: 170 NTPLHLACDEERVEEAKLLVSQG-ASIYIENKEEKTPLQVAKGGLGLIL 217

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 1e-07
 Identities = 42/259 (16%), Positives = 76/259 (29%), Gaps = 40/259 (15%)

Query: 14  NTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVD 73
           N ++   A         +            L T  +    T LH A   G  +  + L+ 
Sbjct: 4   NLMVCNLAY-----SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 58

Query: 74  CAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSL 133
               +          L    +   +  +     AL       N   ++G T         
Sbjct: 59  LGVPVNDKDDAGWSPLHIAASAGRDEIVK----ALLGKGAQVNAVNQNGCT--------- 105

Query: 134 VSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIEL 193
                            PL+ A      +I   +LE      + DAK   ++        
Sbjct: 106 -----------------PLHYAASKNRHEIAVMLLEG---GANPDAKDHYEATAMHRAAA 145

Query: 194 QKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLY 253
           +    +  +     A   IQD + NTP+H A   + +E  + L       +  +N+E   
Sbjct: 146 KGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKT 204

Query: 254 PFHLASANGCVPVMGEFLE 272
           P  +A   G   ++   +E
Sbjct: 205 PLQVA-KGGLGLILKRMVE 222

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.0 bits (141), Expect = 4e-10
 Identities = 56/305 (18%), Positives = 106/305 (34%), Gaps = 50/305 (16%)

Query: 108 LQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMN-------VDCKSPLYLAVESKN 160
           + DAK+ +N          + L R + SE      ++         D  +    A  S +
Sbjct: 3   MADAKQKRN----------EQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGD 52

Query: 161 EDILEYILEALPVNDDCDAK-LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNT 219
            + +  +LE      D +   ++G + +  A     + ++K + +    +    D +   
Sbjct: 53  TEEVLRLLER---GADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNEGWI 108

Query: 220 PMHWAASVDHLEGVRFLYEINPDSVLQ-----------------------KNEEGLYPFH 256
           P+H AAS  +L+   +L                                  N +G+    
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168

Query: 257 LASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKL 316
                  + +        +    +      G   LHVAA KG    +  +          
Sbjct: 169 ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL----IQARYD 224

Query: 317 INEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF 376
           +N  D DG TPLH AA +G      IL ++   + + +N  GQTA+D+A++     + E 
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADEDILGYLEEL 283

Query: 377 SENDD 381
            +  +
Sbjct: 284 QKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 51/266 (19%), Positives = 82/266 (30%), Gaps = 14/266 (5%)

Query: 13  GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72
              +   A +          +   L R     I   N  G T LH A  D  +      +
Sbjct: 40  DGAVFLAACS---SGDTEEVLRL-LERGAD--INYANVDGLTALHQACIDDNVDM-VKFL 92

Query: 73  DCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARS 132
                  +    +    +      G   + E L +        N    +G T LD     
Sbjct: 93  VENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS---EGDTPLDIAEEE 149

Query: 133 LVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIE 192
            + E                    E          L +  +ND   AK  G + + VA  
Sbjct: 150 AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK-SGGTALHVAAA 208

Query: 193 LQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGL 252
                +LK++       + I+D    TP+H AA     E  R L E   D +   N+ G 
Sbjct: 209 KGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQ 266

Query: 253 YPFHLASANGCVPVMGEFLEKENMPH 278
             F +A  +  +  + E  +K+N+ H
Sbjct: 267 TAFDVADED-ILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 48/282 (17%), Positives = 90/282 (31%), Gaps = 49/282 (17%)

Query: 52  GDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDA 111
                  A   G  +    L++           D+       NV G TALH+A       
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLER--------GADI----NYANVDGLTALHQA------- 80

Query: 112 KKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEAL 171
                          +      + E+       + +   PL+ A      DI EY++   
Sbjct: 81  -----------CIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129

Query: 172 PVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLE 231
                 ++  EG +P+ +A E     LL+   ++Q   +    ++    M   A      
Sbjct: 130 AHVGAVNS--EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS 187

Query: 232 GVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNIL 291
           G            ++  + G    H+A+A G   V+          +   + +  G   L
Sbjct: 188 GHIN--------DVRHAKSGGTALHVAAAKGYTEVLKLL---IQARYDVNIKDYDGWTPL 236

Query: 292 HVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAA 332
           H AA  G++ +   ++E   D     +  ++  G T   +A 
Sbjct: 237 HAAAHWGKEEACRILVENLCD-----MEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 22/109 (20%)

Query: 12  SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKIL 71
           SG T LH+AAA   + +  +        +  + + +++  G TPLH AA  G  +  +IL
Sbjct: 198 SGGTALHVAAA---KGYTEVLKLL---IQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 72  VDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA----LNALQDAKKDKN 116
           V         +  D+    E  N  G TA   A    L  L++ +K +N
Sbjct: 252 V--------ENLCDM----EAVNKVGQTAFDVADEDILGYLEELQKKQN 288

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 3e-09
 Identities = 43/231 (18%), Positives = 87/231 (37%), Gaps = 15/231 (6%)

Query: 13  GNTLLHIAAAGSIRNHENMAMA-TTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKIL 71
           G+T LHIA    ++ +         L ++    + + N+   TPLH+A    +    ++L
Sbjct: 3   GDTPLHIAV---VQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 59

Query: 72  VDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL----- 126
           V       +  +            R  T L   L++      D      DG+T+L     
Sbjct: 60  VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 119

Query: 127 ---DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEG 183
                  + L+    +   +     +SPL  AVE+ +  +++ +L+     +       G
Sbjct: 120 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ--HGANVNAQMYSG 177

Query: 184 KSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVR 234
            S +  A     L L++ +     A   +++   +TP+  A S   ++ +R
Sbjct: 178 SSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 1e-08
 Identities = 43/234 (18%), Positives = 76/234 (32%), Gaps = 28/234 (11%)

Query: 52  GDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEA------- 104
           GDTPLH+A   G L     LV+    +      ++    ++ N    T LH A       
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVN----LFQQGGREL----DIYNNLRQTPLHLAVITTLPS 54

Query: 105 LNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDIL 164
           +  L           +    +   LA    S     + L +    +    A        L
Sbjct: 55  VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 114

Query: 165 EY-----------ILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQ 213
                        +L     + D      G+SP+  A+E   L +++++       +  Q
Sbjct: 115 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQ 173

Query: 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVM 267
               ++ +H A+    L  VR L     D    KN     P  +A +   + ++
Sbjct: 174 MYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 4e-08
 Identities = 31/224 (13%), Positives = 73/224 (32%), Gaps = 7/224 (3%)

Query: 147 DCKSPLYLAVESKNEDILEYILEALPVND-DCDAK-LEGKSPVKVAIELQKLGLLKMMHD 204
           D  +PL++AV   N   +  ++        + D      ++P+ +A+      +++++  
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 205 KQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCV 264
              + + +                       L    P ++  +         L  A    
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 265 PVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDG 324
                 L  E     + +    G++ L  A +         +++        +N     G
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL----SMVQLLLQHGANVNAQMYSG 177

Query: 325 NTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368
           ++ LH A+  G   +   L + G A+S + N +  T   +A  +
Sbjct: 178 SSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSR 220

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 6/173 (3%)

Query: 215 EQMNTPMHWAASVDHLEGVRFLYEINPDS---VLQKNEEGLYPFHLASANGCVPVMGEFL 271
           E  +TP+H A    +L  V  L  +       +   N     P HLA       V+    
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL- 59

Query: 272 EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLA 331
                       +  GQ   H+A +      +  +L+++      +   + DG T LH+A
Sbjct: 60  --VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 117

Query: 332 ALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSENDDDMM 384
                     +L + G     +    G++    A +  +  + +        +
Sbjct: 118 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 170

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 3e-09
 Identities = 32/251 (12%), Positives = 62/251 (24%), Gaps = 32/251 (12%)

Query: 14  NTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVD 73
           N  LH A                L    P L+  ++  G  PLH +      +    L+ 
Sbjct: 1   NYPLHQACM-----ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 55

Query: 74  CAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSL 133
             + +      D               L                                
Sbjct: 56  KMENVNLDDYPDDSGWTPFHIACSVGNLEV---------------------------VKS 88

Query: 134 VSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIEL 193
           + + P    L  +  +    L +    +                      + P+  A  +
Sbjct: 89  LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 148

Query: 194 QKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLY 253
             L L++++     + +  QD+Q  TP+  A +  H +    L E         + +G  
Sbjct: 149 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK 208

Query: 254 PFHLASANGCV 264
              +A      
Sbjct: 209 AEDVALNEQVK 219

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (130), Expect = 5e-09
 Identities = 36/218 (16%), Positives = 67/218 (30%), Gaps = 4/218 (1%)

Query: 151 PLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALL 210
           PL+ A        ++ +L + P       + +G+ P+  ++  Q   +   +  K   + 
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 211 LIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEF 270
           L      +    +  +             +       N+                     
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 271 LEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHL 330
                      + +   Q  LH AA  G    +  +          +N  D  G TPL  
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK---SAVNWQDKQGWTPLFH 178

Query: 331 AALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368
           A   GH   AV+L +   AE D+++  G  A D+A  +
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 216

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 4e-08
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
           N P+H A   +    V+ L    P  +LQK+++G  P H + +     +    L K    
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 278 HPN 280
           + +
Sbjct: 61  NLD 63

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 8/41 (19%), Positives = 14/41 (34%)

Query: 325 NTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365
           N PLH A +   +F    L     +     +  G+     +
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS 41

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 33/216 (15%), Positives = 76/216 (35%), Gaps = 12/216 (5%)

Query: 129 LARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVK 188
           +   L+++    +  M+   ++ L+LA      D  + +L+A    +  D          
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 189 VAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKN 248
           VA +   +  + + +         +     TP+  AA +     V  L   + D +   +
Sbjct: 64  VAADAMGVFQILLRNRATNLN--ARMHDGTTPLILAARLAIEGMVEDLITADAD-INAAD 120

Query: 249 EEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE 308
             G    H A+A      +             +  ++K +  L +AA++G   +   +L+
Sbjct: 121 NSGKTALHWAAAVNNTEAVNIL---LMHHANRDAQDDKDETPLFLAAREGSYEASKALLD 177

Query: 309 A-SDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
             ++         D     P  +A+   H+ +  +L
Sbjct: 178 NFAN-----REITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 31/225 (13%), Positives = 57/225 (25%), Gaps = 34/225 (15%)

Query: 48  QNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNA 107
            +  G+T LH+AAR      AK L+D      S        L               L  
Sbjct: 19  MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRN 78

Query: 108 LQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYI 167
                  +                + +      +    V+        + + +      +
Sbjct: 79  RATNLNARMHDG-----------TTPLILAARLAIEGMVEDLITADADINAADNSGKTAL 127

Query: 168 LEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASV 227
             A  VN+                          +     A    QD++  TP+  AA  
Sbjct: 128 HWAAAVNNTEAV---------------------NILLMHHANRDAQDDKDETPLFLAARE 166

Query: 228 DHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
              E  + L +   +     +     P  +AS      ++   L+
Sbjct: 167 GSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIV-RLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 32/186 (17%), Positives = 56/186 (30%), Gaps = 35/186 (18%)

Query: 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272
            D+   T +H AA     +  + L +   D+  Q N          +A+           
Sbjct: 19  MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRN 78

Query: 273 KENMPHPNELF------------------------------NNKGQNILHVAAKKGRDVS 302
           +    +                                   +N G+  LH AA      +
Sbjct: 79  RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEA 138

Query: 303 VTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAY 362
           V  +     +     +  DD   TPL LAA  G Y  +  L  +  A  +I +   +   
Sbjct: 139 VNIL----LMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF-ANREITDHMDRLPR 193

Query: 363 DIAEQQ 368
           D+A ++
Sbjct: 194 DVASER 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 2e-08
 Identities = 28/235 (11%), Positives = 66/235 (28%), Gaps = 24/235 (10%)

Query: 52  GDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDA 111
           GD+ LH+A           ++    R        +      +N    T LH A+   Q  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVI----RQVKGDLAFL----NFQNNLQQTPLHLAVITNQPE 53

Query: 112 KKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEAL 171
             +                     +     +  N            +    + +      
Sbjct: 54  IAEALLGAGC--------------DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 99

Query: 172 PVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLE 231
             +        G + + +A     LG+++++      +   +     T +H A  + + +
Sbjct: 100 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 159

Query: 232 GVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNK 286
            V  L +   D       +G  P+ L        +  + L +  + +   L  ++
Sbjct: 160 LVSLLLKCGADVNR-VTYQGYSPYQLTWGRPSTRIQ-QQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 2e-07
 Identities = 29/207 (14%), Positives = 67/207 (32%), Gaps = 12/207 (5%)

Query: 147 DCKSPLYLAVESKNEDILEYILEALPVN-DDCDAK-LEGKSPVKVAIELQKLGLLKMMHD 204
           D  S L+LA+  + + +   ++  +  +    + +    ++P+ +A+   +  + + +  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 205 KQPALLLIQDEQMNTPMHWAAS----VDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASA 260
                 L                      +             +   N  G    HLAS 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 261 NGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEM 320
           +G + ++   +      +  E  N  G+  LH+A        V+ +L+        +N +
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCN--GRTALHLAVDLQNPDLVSLLLKC----GADVNRV 174

Query: 321 DDDGNTPLHLAALYGHYFVAVILGKDG 347
              G +P  L        +   LG+  
Sbjct: 175 TYQGYSPYQLTWGRPSTRIQQQLGQLT 201

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 323 DGNTPLHLAALYGHYFVA---VILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFSEN 379
           DG++ LHLA ++    +    +   K   A  +  N   QT   +A       I E    
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 380 DDDMM 384
                
Sbjct: 61  AGCDP 65

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 33/238 (13%), Positives = 73/238 (30%), Gaps = 30/238 (12%)

Query: 13  GNTLLHIAAAGSIRNHENMAMAT-TLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKIL 71
           G++ LH+A    I   + + M      +     +  QN+   TPLH+A      + A+ L
Sbjct: 2   GDSFLHLAI---IHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 58

Query: 72  VDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLAR 131
           +                L          ++     +                        
Sbjct: 59  LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL-------------- 104

Query: 132 SLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAI 191
                        N +  + L+LA       I+E +  +L  + +      G++ + +A+
Sbjct: 105 ----------KATNYNGHTCLHLASIHGYLGIVELL-VSLGADVNAQEPCNGRTALHLAV 153

Query: 192 ELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNE 249
           +LQ   L+ ++     A +     Q  +P             + L ++  +++    E
Sbjct: 154 DLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE 210

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 29/239 (12%), Positives = 65/239 (27%), Gaps = 38/239 (15%)

Query: 97  GNTALHEA------------LNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLM 144
           G++ LH A            +  ++      N       T L     +   E   A    
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 145 NVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHD 204
             D +   +      +    +  L ++ V                               
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQ-----------------------SCTTP 98

Query: 205 KQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCV 264
              ++L   +   +T +H A+   +L  V  L  +  D   Q+   G    HLA      
Sbjct: 99  HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 158

Query: 265 PVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDD 323
            ++   L+             +G +   +   +        + + +    +++ E +D+
Sbjct: 159 DLVSLLLKCG---ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDE 214

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 8e-07
 Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 34/155 (21%)

Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
              +  AA+   ++ VR L           N  G     +         +    +  +  
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN 62

Query: 278 HPNELF-----------------------------NNKGQNILHVAAKKGRDVSVTHILE 308
             +                                +  G   +H+A ++G    V+ +  
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122

Query: 309 ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
            SD     ++  D  G TPL LA   G   +  IL
Sbjct: 123 ESD-----LHRRDARGLTPLELALQRGAQDLVDIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 17/151 (11%), Positives = 32/151 (21%), Gaps = 24/151 (15%)

Query: 217 MNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENM 276
           +   +  AA     + VR L                        +     +         
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 277 PHPNELFNNKGQN-------ILHVAAKKGRDVSV-----------------THILEASDL 312
                               I+ V  K G DV+                    ++E    
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121

Query: 313 TDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
               ++       T   ++   G+  +A IL
Sbjct: 122 YGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 8e-06
 Identities = 20/151 (13%), Positives = 39/151 (25%), Gaps = 27/151 (17%)

Query: 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVM----------- 267
             +  AA+   LE +  L + N + V  +N  G     +                     
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 268 ---------------GEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDL 312
                          G     + +       N +            ++  +  +      
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 313 TDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343
           T   +   +  G+T   LA LYG   V  ++
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 1e-04
 Identities = 26/129 (20%), Positives = 35/129 (27%), Gaps = 8/129 (6%)

Query: 215 EQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKE 274
           E     +  AA+   +E VR L        L+       P         V +MG     E
Sbjct: 1   EPSADWLATAAARGRVEEVRAL--------LEAGANPNAPNSYGRRPIQVMMMGSARVAE 52

Query: 275 NMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALY 334
            +       N      L               L         ++  D  G  P+ LA   
Sbjct: 53  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL 112

Query: 335 GHYFVAVIL 343
           GH  VA  L
Sbjct: 113 GHRDVARYL 121

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.003
 Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 3/122 (2%)

Query: 52  GDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDA 111
               L  AA  G ++  + L++      + +    + +  M       A    L+  +  
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 112 KKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCK---SPLYLAVESKNEDILEYIL 168
             D          +        +     A   ++V       P+ LA E  + D+  Y+ 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 169 EA 170
            A
Sbjct: 123 AA 124

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 13/115 (11%), Positives = 20/115 (17%), Gaps = 8/115 (6%)

Query: 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMP 277
           +    WA     L+ V+          + K E+                    LE     
Sbjct: 3   DKEFMWALKNGDLDEVKDY--------VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 54

Query: 278 HPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA 332
                  N                     ++              DG T L    
Sbjct: 55  LLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD 109

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 21/157 (13%)

Query: 218 NTPMHW---AASVDHLEGVRFLYEINPD-----SVLQKNEEGLYPFHLASAN---GCVPV 266
              +H    A     + G+   Y    D      +   +E      HLA  +     + +
Sbjct: 4   AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 63

Query: 267 MGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNT 326
           + +FL + +     +                   + +    +AS          ++ G T
Sbjct: 64  V-DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI------EIANESGET 116

Query: 327 PLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYD 363
           PL +A    H     +L +   A S   N +    Y+
Sbjct: 117 PLDIAKRLKHEHCEELLTQ---ALSGRFNSHVHVEYE 150

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 6e-04
 Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 9/142 (6%)

Query: 97  GNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAV 156
               LH    A++           D    L + A  +   +       +   ++ L+LAV
Sbjct: 3   TAAKLHSLCEAVK---------TRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV 53

Query: 157 ESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQ 216
            S +   L  +   +  + + D +    S       L        +  +  A + I +E 
Sbjct: 54  RSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES 113

Query: 217 MNTPMHWAASVDHLEGVRFLYE 238
             TP+  A  + H      L +
Sbjct: 114 GETPLDIAKRLKHEHCEELLTQ 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	626
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.98
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.89
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.89
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.84
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.84
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.82
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.81
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.76
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.74

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-44  Score=375.10  Aligned_cols=331  Identities=26%  Similarity=0.308  Sum_probs=260.2

Q ss_pred             cHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhc
Q 039828           15 TLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKN   94 (626)
Q Consensus        15 t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~   94 (626)
                      ||||+||..|+   .+  +|++|+++|.+ ++..|..|+||||+||..|+.++|++|+++|++++            .+|
T Consensus         2 TpL~~Aa~~g~---~~--~v~~Ll~~g~~-in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~------------~~~   63 (408)
T d1n11a_           2 TPLHVASFMGH---LP--IVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN------------AKA   63 (408)
T ss_dssp             CHHHHHHHHTC---HH--HHHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS------------CCC
T ss_pred             ChHHHHHHCcC---HH--HHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC------------CCC
Confidence            78888888888   77  88888887765 77778888888888888888888888888877653            366


Q ss_pred             cCCCCHHHHHHHhh--------hhhhcc---------------------------------CCCCCCCCCCc--------
Q 039828           95 VRGNTALHEALNAL--------QDAKKD---------------------------------KNKPKEDGVTS--------  125 (626)
Q Consensus        95 ~~g~T~Lh~A~~~~--------~~~~~~---------------------------------~~~~~~~~~~~--------  125 (626)
                      .+|.||||+|+...        ......                                 .......+...        
T Consensus        64 ~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~  143 (408)
T d1n11a_          64 KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG  143 (408)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcC
Confidence            77777777776521        000000                                 00000111111        


Q ss_pred             HHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhc
Q 039828          126 LDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDK  205 (626)
Q Consensus       126 ~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  205 (626)
                      -.++++.|++++.+++ ..+.+|.+|||+|+..|+.+++++|++++..  ....+..|.||+|.+......+....++..
T Consensus       144 ~~~~v~~ll~~~~~~~-~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~  220 (408)
T d1n11a_         144 KVRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS--PHSPAWNGYTPLHIAAKQNQVEVARSLLQY  220 (408)
T ss_dssp             CHHHHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC--SCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCCC-cCCCcCchHHHHHHHcCCHHHHHHHHhcCCc--ccccCCCCCCcchhhhccchhhhhhhhhhc
Confidence            0567777777777766 5667777788888888888888877777663  334455677888888777777777777776


Q ss_pred             CCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccC
Q 039828          206 QPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNN  285 (626)
Q Consensus       206 ~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~  285 (626)
                      . ......+..|.||||+|+..++.++++.+.+.... .+..+..|.||++.|+..++.+++++|+++|.+++.   .+.
T Consensus       221 ~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~---~~~  295 (408)
T d1n11a_         221 G-GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA---TTR  295 (408)
T ss_dssp             T-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC---CCS
T ss_pred             c-ccccccCCCCCCHHHHHHHhCcHhHhhhhhccccc-cccccCCCCChhhhhhhcCcHHHHHHHHHCCCcccc---ccc
Confidence            6 44555677888999999999999999999998776 777899999999999999999999999998866544   477


Q ss_pred             CCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHH
Q 039828          286 KGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA  365 (626)
Q Consensus       286 ~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la  365 (626)
                      .+.||||.++..++.++++++++.|    +++|.+|.+|+||||+|++.|+.+++++|+++| +|++.+|++|+||||+|
T Consensus       296 ~~~t~L~~~~~~~~~~~~~~ll~~g----~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~G-Ad~n~~d~~G~t~L~~A  370 (408)
T d1n11a_         296 MGYTPLHVASHYGNIKLVKFLLQHQ----ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIA  370 (408)
T ss_dssp             SCCCHHHHHHHSSCSHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCSSSCCHHHHH
T ss_pred             cccccchhhcccCcceeeeeecccc----ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHH
Confidence            8999999999999999999999998    889999999999999999999999999999999 99999999999999999


Q ss_pred             HHhcccccccc
Q 039828          366 EQQYAKIIPEF  376 (626)
Q Consensus       366 ~~~~~~~i~~~  376 (626)
                      .+.|+.+++++
T Consensus       371 ~~~~~~~iv~~  381 (408)
T d1n11a_         371 KRLGYISVTDV  381 (408)
T ss_dssp             HHTTCHHHHHH
T ss_pred             HHcCCHHHHHH
Confidence            99988877765

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-38  Score=330.58  Aligned_cols=304  Identities=23%  Similarity=0.286  Sum_probs=265.9

Q ss_pred             cccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccch-
Q 039828            6 KTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQI-   84 (626)
Q Consensus         6 ~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-   84 (626)
                      .+..|.+|+||||+||..|+   .+  ++++|++++.+ ++.+|.+|+||||+|+..|+.+++++|++...+....... 
T Consensus        26 in~~d~~g~TpL~~A~~~g~---~~--iv~~Ll~~gad-i~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~   99 (408)
T d1n11a_          26 PNVSNVKVETPLHMAARAGH---TE--VAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG   99 (408)
T ss_dssp             SCCSSSCCCCHHHHHHHHTC---HH--HHHHHHHHTCC-SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTC
T ss_pred             CCCCCCCCCCHHHHHHHcCC---HH--HHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccc
Confidence            47789999999999999999   88  99999999886 8999999999999999999999999999876654211000 


Q ss_pred             ----------------------------------------------h-hhHH------HHhhccCCCCHHHHHHHhhhhh
Q 039828           85 ----------------------------------------------D-VKFL------MEMKNVRGNTALHEALNALQDA  111 (626)
Q Consensus        85 ----------------------------------------------~-~~~~------l~~~~~~g~T~Lh~A~~~~~~~  111 (626)
                                                                    + .+.+      ++..+.+|.+|||+|+.     
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~-----  174 (408)
T d1n11a_         100 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH-----  174 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHH-----
T ss_pred             cchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHH-----
Confidence                                                          0 1111      23456677888888888     


Q ss_pred             hccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHH
Q 039828          112 KKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAI  191 (626)
Q Consensus       112 ~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~  191 (626)
                        .++          .++++.|++++++++ ..+..|.||+|.++...+.++...++....  .....+..+.||++.|+
T Consensus       175 --~~~----------~~~~~~Ll~~g~~~~-~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~t~l~~a~  239 (408)
T d1n11a_         175 --HNN----------LDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGG--SANAESVQGVTPLHLAA  239 (408)
T ss_dssp             --TTC----------HHHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHH
T ss_pred             --cCC----------HHHHHHHHhcCCccc-ccCCCCCCcchhhhccchhhhhhhhhhccc--cccccCCCCCCHHHHHH
Confidence              788          999999999999987 678899999999999999999999998765  33445567899999999


Q ss_pred             HhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHH
Q 039828          192 ELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL  271 (626)
Q Consensus       192 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  271 (626)
                      ..++.++++.+++.. ...+..|..|.|||+.|+..++.+++++|++.+++ .+..+..+.||||.++..++.++++.++
T Consensus       240 ~~~~~~~~~~~~~~~-~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~~~~~~~~~~ll  317 (408)
T d1n11a_         240 QEGHAEMVALLLSKQ-ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLL  317 (408)
T ss_dssp             HTTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHH
T ss_pred             HhCcHhHhhhhhccc-cccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhcccCcceeeeeec
Confidence            999999999999887 67778899999999999999999999999999988 7888889999999999999999999999


Q ss_pred             hccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHh
Q 039828          272 EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILG  344 (626)
Q Consensus       272 ~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll  344 (626)
                      +.|.+.   +.+|.+|+||||+|+++|+.+++++|+++|    +++|.+|.+|+||||+|+++|+.++|++|.
T Consensus       318 ~~g~~i---n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~G----Ad~n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         318 QHQADV---NAKTKLGYSPLHQAAQQGHTDIVTLLLKNG----ASPNEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             HTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccc---cccCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            977544   456899999999999999999999999998    889999999999999999999999998664

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.8e-34  Score=277.27  Aligned_cols=246  Identities=18%  Similarity=0.139  Sum_probs=181.8

Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcH
Q 039828           47 MQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL  126 (626)
Q Consensus        47 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~  126 (626)
                      ..|.+|+||||+||++|+.++|++|+++|++.         ..++.+|..|.||||+|+.       .++          
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~---------~~i~~~~~~g~TpL~~A~~-------~g~----------   57 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---------EYLDLQNDLGQTALHLAAI-------LGE----------   57 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---------GGGGCCCTTSCCHHHHHHH-------HTC----------
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCc---------ccccCcCCCCCCccchHHh-------hcc----------
Confidence            36789999999999999999999999998764         2456789999999999999       899          


Q ss_pred             HHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcC
Q 039828          127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQ  206 (626)
Q Consensus       127 ~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  206 (626)
                      .++++.|+++|++++ ..|.+|.||||+|+..++.+++++|++.........     ............           
T Consensus        58 ~~iv~~Ll~~ga~i~-~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~-----~~~~~~~~~~~~-----------  120 (255)
T d1oy3d_          58 ASTVEKLYAAGAGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA-----SDTYLTQSQDCT-----------  120 (255)
T ss_dssp             HHHHHHHHHTTCCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------
T ss_pred             ccccccccccccccc-ccccccchhhhhhhccCchHHHHHHHhhccchhccc-----chhhhhHHhhhc-----------
Confidence            999999999999987 789999999999999999999999998654221111     111000000000           


Q ss_pred             CccccccCCCCCchhhHHhhCCCH-HHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccC
Q 039828          207 PALLLIQDEQMNTPMHWAASVDHL-EGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNN  285 (626)
Q Consensus       207 ~~~~~~~d~~g~tpLh~Aa~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~  285 (626)
                             ......++......... .........+.+ .+.+|..|.||||+|+..|+.+++++|++.+..+.  ...+.
T Consensus       121 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~--~~~~~  190 (255)
T d1oy3d_         121 -------PDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN--KPEPT  190 (255)
T ss_dssp             ------------------------------CCCGGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTT
T ss_pred             -------ccchHHHHHHHhhcchhHHHHHHhhhcCcc-cccccccCcccccccccccccccccchhccccccc--ccccc
Confidence                   00001111111111111 112222222333 56788899999999999999999999999765544  34577


Q ss_pred             CCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCc
Q 039828          286 KGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAE  350 (626)
Q Consensus       286 ~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d  350 (626)
                      .|+||||+|++.++.+++++|+++|    +++|.+|.+|+||||+|+..++.+++++|+++| |+
T Consensus       191 ~g~TpL~~A~~~~~~~~v~~Ll~~g----adin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~G-a~  250 (255)
T d1oy3d_         191 CGRTPLHLAVEAQAASVLELLLKAG----ADPTARMYGGRTPLGSALLRPNPILARLLRAHG-AP  250 (255)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT-CC
T ss_pred             cccccccccccccHHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC-CC
Confidence            8999999999999999999999988    889999999999999999999999999999999 65

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-33  Score=265.58  Aligned_cols=220  Identities=20%  Similarity=0.235  Sum_probs=174.9

Q ss_pred             CCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHh
Q 039828           13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEM   92 (626)
Q Consensus        13 g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~   92 (626)
                      ++++||.+|+.|+   .+  .++.+++..+.+++.+|..|+||||+||..|+.+++++|++.+.....            
T Consensus         3 ~~~~~~~~a~~G~---~~--~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~------------   65 (223)
T d1uoha_           3 SNLMVCNLAYSGK---LE--ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND------------   65 (223)
T ss_dssp             SSSHHHHHHHTTC---HH--HHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCC------------
T ss_pred             CHHHHHHHHHhCC---HH--HHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccc------------
Confidence            5789999999999   88  999999999988999999999999999999999999999998765432            


Q ss_pred             hccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 039828           93 KNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALP  172 (626)
Q Consensus        93 ~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  172 (626)
                      .+..+.++++.++.       .++          .++++.|++++++++ ..|.+|.||||+|+..|+.+++++|++.+.
T Consensus        66 ~~~~~~~~~~~~~~-------~~~----------~~i~~~Ll~~~~d~~-~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~  127 (223)
T d1uoha_          66 KDDAGWSPLHIAAS-------AGR----------DEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGA  127 (223)
T ss_dssp             CCTTCCCHHHHHHH-------HTC----------HHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             cccccccccccccc-------ccc----------cchhHHHhccCceeE-eeCCCCCchhhHHHHcCCHHHHHHHHHCCC
Confidence            55677888888888       788          888888888888776 678888888888888888888888888766


Q ss_pred             CCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCC
Q 039828          173 VNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGL  252 (626)
Q Consensus       173 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~  252 (626)
                      +.  ...+..|.||||.|+..++.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+
T Consensus       128 d~--~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~-~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad-~~~~d~~g~  203 (223)
T d1uoha_         128 NP--DAKDHYEATAMHRAAAKGNLKMIHILLYYK-ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEK  203 (223)
T ss_dssp             CT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSC
T ss_pred             CC--CCcCCCCCccchhhhhcCCcchhhhhcccc-ceeeeccCCCCceeccccccCcHHHHHHHHHCCCC-CCCCCCCCC
Confidence            33  344556777777777777777777777766 55677777777777777777777777777777776 667777777


Q ss_pred             hHHHHHHhcCChHHHHHHHh
Q 039828          253 YPFHLASANGCVPVMGEFLE  272 (626)
Q Consensus       253 tpLh~A~~~g~~~~v~~Ll~  272 (626)
                      ||||+| ..|+.+++++|++
T Consensus       204 tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         204 TPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CHHHHC-CTTHHHHHHHHHC
T ss_pred             CHHHHH-HCCCHHHHhcccC
Confidence            777776 4577777777764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-32  Score=271.55  Aligned_cols=268  Identities=20%  Similarity=0.195  Sum_probs=225.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHH
Q 039828           51 KGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLA  130 (626)
Q Consensus        51 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~  130 (626)
                      +++|+||.|++.|+.++|++|+++|++++.           ..+..|.||||+|+.       .++          .+++
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~-----------~~~~~g~tpL~~A~~-------~~~----------~eiv   55 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNF-----------QEEEGGWTPLHNAVQ-------MSR----------EDIV   55 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTC-----------CCTTTCCCHHHHHHH-------TTC----------HHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCc-----------cCCCCCCCHHHHHHH-------cCC----------HHHh
Confidence            467899999999999999999999987632           134579999999999       898          9999


Q ss_pred             HHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCc--
Q 039828          131 RSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPA--  208 (626)
Q Consensus       131 ~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--  208 (626)
                      +.|++.+.... ..+..+.+|.+.++..+..+.....++...  +....+..+.++++.|+..++...++.++.....  
T Consensus        56 ~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~  132 (285)
T d1wdya_          56 ELLLRHGADPV-LRKKNGATPFLLAAIAGSVKLLKLFLSKGA--DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN  132 (285)
T ss_dssp             HHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             hhhcccccccc-ccccccchhhHHHhhcCCccccchhhhhcc--cccccccCCCchhHHHHHhcchhhhhhhhhhccccc
Confidence            99999988876 567788999999999999999999988755  3344556789999999999999999888876421  


Q ss_pred             -------cccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcC----ChHHHHHHHhccCCC
Q 039828          209 -------LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG----CVPVMGEFLEKENMP  277 (626)
Q Consensus       209 -------~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g----~~~~v~~Ll~~g~~~  277 (626)
                             .....+..|.||||+|+..|+.+++++|+++....++..+..|.++.+.+...+    ..++++.|+++|.++
T Consensus       133 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~  212 (285)
T d1wdya_         133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV  212 (285)
T ss_dssp             CCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS
T ss_pred             ccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCC
Confidence                   123456779999999999999999999998644447888999998888765443    457899999987665


Q ss_pred             CCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccccccc
Q 039828          278 HPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINF  356 (626)
Q Consensus       278 ~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~  356 (626)
                         +.+|..|+||||+|+.+|+.+++++|++..   +.++|.+|.+|+||||+|++.|+.+++++|+++| +|+|++|.
T Consensus       213 ---n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~---g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G-Ad~n~~d~  284 (285)
T d1wdya_         213 ---NVRGERGKTPLILAVEKKHLGLVQRLLEQE---HIEINDTDSDGKTALLLAVELKLKKIAELLCKRG-ASTDCGDL  284 (285)
T ss_dssp             ---SCCCTTSCCHHHHHHHTTCHHHHHHHHHSS---SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-SCSCCSSC
T ss_pred             ---CccCCCCCCccchhhhcCcHHHHHHHHHcC---CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCcccC
Confidence               445889999999999999999999999863   2789999999999999999999999999999999 99999874

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-33  Score=273.01  Aligned_cols=245  Identities=21%  Similarity=0.186  Sum_probs=180.3

Q ss_pred             ccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhC--cccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccch
Q 039828            7 TITSPSGNTLLHIAAAGSIRNHENMAMATTLARKY--PFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQI   84 (626)
Q Consensus         7 ~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~--~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   84 (626)
                      .-+|.+|+||||+||.+|+   .+  ++++|++.+  +..++.+|..|+||||+||..|+.+++++|+++|+++.     
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~---~~--~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~-----   72 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQH---EP--FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-----   72 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTC---HH--HHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-----
T ss_pred             ccCCcCCCCHHHHHHHcCC---HH--HHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccccc-----
Confidence            4578999999999999999   88  999999875  45578899999999999999999999999999998763     


Q ss_pred             hhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHH
Q 039828           85 DVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDIL  164 (626)
Q Consensus        85 ~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  164 (626)
                             .+|.+|.||||+|+.       .++          .++++.|++..........    ............+. 
T Consensus        73 -------~~d~~g~tpL~~A~~-------~~~----------~~~~~~Ll~~~~~~~~~~~----~~~~~~~~~~~~~~-  123 (255)
T d1oy3d_          73 -------VAERGGHTALHLACR-------VRA----------HTCACVLLQPRPSHPRDAS----DTYLTQSQDCTPDT-  123 (255)
T ss_dssp             -------CCCTTSCCHHHHHTT-------TTC----------HHHHHHHSSSCCSSCCCC--------------------
T ss_pred             -------ccccccchhhhhhhc-------cCc----------hHHHHHHHhhccchhcccc----hhhhhHHhhhcccc-
Confidence                   488999999999998       888          9999999988755431111    11111100000000 


Q ss_pred             HHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcc
Q 039828          165 EYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSV  244 (626)
Q Consensus       165 ~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~  244 (626)
                                        ...++..............+.......++.+|..|.||||+|+..++.+++++|++.+.+..
T Consensus       124 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~  185 (255)
T d1oy3d_         124 ------------------SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN  185 (255)
T ss_dssp             --------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred             ------------------hHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccccc
Confidence                              00011111111111112222222235567788999999999999999999999999988866


Q ss_pred             cccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCC
Q 039828          245 LQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASD  311 (626)
Q Consensus       245 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~  311 (626)
                      ...+..|.||||+|+..|+.+++++|+++|++++   .+|..|+||||+|+.+++.+++++|+++|+
T Consensus       186 ~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin---~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT---ARMYGGRTPLGSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             ccccccccccccccccccHHHHHHHHHHCCCCCC---CCCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            6778889999999999999999999999876554   458889999999999999999999999983

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-32  Score=267.32  Aligned_cols=268  Identities=16%  Similarity=0.119  Sum_probs=230.0

Q ss_pred             CCCcHHHHHHhcCCCccccHHHHHHHHhhCccccccc-ccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHH
Q 039828           12 SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQ-NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLM   90 (626)
Q Consensus        12 ~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~-d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l   90 (626)
                      +++|+||.|++.|+   .+  +|++|+++|++ ++.+ +..|+||||+|+..|+.+++++|++.+....           
T Consensus         4 ~~~~~L~~Ai~~~~---~e--~vk~Ll~~G~d-in~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~-----------   66 (285)
T d1wdya_           4 EDNHLLIKAVQNED---VD--LVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-----------   66 (285)
T ss_dssp             HHHHHHHHHHHTTC---HH--HHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------
T ss_pred             CCcHHHHHHHHcCC---HH--HHHHHHHCCCC-cCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccc-----------
Confidence            57899999999999   88  99999999977 6655 4579999999999999999999999987552           


Q ss_pred             HhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 039828           91 EMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEA  170 (626)
Q Consensus        91 ~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  170 (626)
                       ..+..+.+|.+.+..       .+.          .+.....++...+.. ..+..+.++++.|+..++...++.++..
T Consensus        67 -~~~~~~~~~~~~~~~-------~~~----------~~~~~~~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~~~~~  127 (285)
T d1wdya_          67 -LRKKNGATPFLLAAI-------AGS----------VKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKR  127 (285)
T ss_dssp             -CCCTTCCCHHHHHHH-------HTC----------HHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             -ccccccchhhHHHhh-------cCC----------ccccchhhhhccccc-ccccCCCchhHHHHHhcchhhhhhhhhh
Confidence             367788999999998       777          888888888876655 6788999999999999999999999986


Q ss_pred             CCCCCcc--------ccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhh----CCCHHHHHHhhh
Q 039828          171 LPVNDDC--------DAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAAS----VDHLEGVRFLYE  238 (626)
Q Consensus       171 ~~~~~~~--------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~----~g~~~~v~~Ll~  238 (626)
                      ....+..        .....|.||||.|+..|+.+++++|++..+.+++..+..|.++++.+..    .+..+++++|++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~  207 (285)
T d1wdya_         128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD  207 (285)
T ss_dssp             TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH
T ss_pred             cccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHH
Confidence            5533221        2335689999999999999999999998778899999999988876543    334679999999


Q ss_pred             cCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcc
Q 039828          239 INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLIN  318 (626)
Q Consensus       239 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in  318 (626)
                      .+++ ++.++..|.||||.|+..|+.+++++|++.  ....++.+|.+|+||||+|+++|+.+++++|+++|    +++|
T Consensus       208 ~ga~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~--~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G----Ad~n  280 (285)
T d1wdya_         208 HGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQ--EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG----ASTD  280 (285)
T ss_dssp             TTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHS--SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS----SCSC
T ss_pred             CCCC-CCccCCCCCCccchhhhcCcHHHHHHHHHc--CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCC
Confidence            9988 788899999999999999999999999983  33445667999999999999999999999999999    8889


Q ss_pred             cCCC
Q 039828          319 EMDD  322 (626)
Q Consensus       319 ~~d~  322 (626)
                      .+|.
T Consensus       281 ~~d~  284 (285)
T d1wdya_         281 CGDL  284 (285)
T ss_dssp             CSSC
T ss_pred             cccC
Confidence            8873

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-32  Score=260.52  Aligned_cols=220  Identities=19%  Similarity=0.207  Sum_probs=168.5

Q ss_pred             CCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCc
Q 039828           97 GNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDD  176 (626)
Q Consensus        97 g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  176 (626)
                      +++.|+.++.       .|+          .+.++.++..++.....+|..|+||||+|+..|+.++++++++....  .
T Consensus         3 ~~~~~~~~a~-------~G~----------~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~--~   63 (223)
T d1uoha_           3 SNLMVCNLAY-------SGK----------LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--V   63 (223)
T ss_dssp             SSSHHHHHHH-------TTC----------HHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC--S
T ss_pred             CHHHHHHHHH-------hCC----------HHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccc--c
Confidence            4677787777       888          77787777776666667888888888888888888888888887653  3


Q ss_pred             cccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHH
Q 039828          177 CDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFH  256 (626)
Q Consensus       177 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh  256 (626)
                      ......+.++++.++..++.+++++|++++ .+++..|..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~-~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~  141 (223)
T d1uoha_          64 NDKDDAGWSPLHIAASAGRDEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMH  141 (223)
T ss_dssp             CCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             ccccccccccccccccccccchhHHHhccC-ceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCccch
Confidence            334445778888888888888888888877 56777788888888888888888888888887776 6677778888888


Q ss_pred             HHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCC
Q 039828          257 LASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGH  336 (626)
Q Consensus       257 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~  336 (626)
                      .|+..++.+++++|.+.+.++   +.+|..|+||||+|+.+|+.+++++|++.|    ++++.+|.+|+||||+| ..|+
T Consensus       142 ~a~~~~~~~~~~~L~~~~~~i---~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~G----ad~~~~d~~g~tpl~~A-~~~~  213 (223)
T d1uoha_         142 RAAAKGNLKMIHILLYYKAST---NIQDTEGNTPLHLACDEERVEEAKLLVSQG----ASIYIENKEEKTPLQVA-KGGL  213 (223)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCS---CCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCSCCCCTTSCCHHHHC-CTTH
T ss_pred             hhhhcCCcchhhhhcccccee---eeccCCCCceeccccccCcHHHHHHHHHCC----CCCCCCCCCCCCHHHHH-HCCC
Confidence            888888888888887755433   445777888888888888888888888877    77778888888888877 4577


Q ss_pred             HHHHHHHhh
Q 039828          337 YFVAVILGK  345 (626)
Q Consensus       337 ~~iv~~Ll~  345 (626)
                      .+++++|++
T Consensus       214 ~~i~~~Ll~  222 (223)
T d1uoha_         214 GLILKRMVE  222 (223)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHhcccC
Confidence            777777764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-32  Score=259.86  Aligned_cols=225  Identities=19%  Similarity=0.150  Sum_probs=151.7

Q ss_pred             CcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhh
Q 039828           14 NTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMK   93 (626)
Q Consensus        14 ~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~   93 (626)
                      ++|||+||..|+   .+  .++.|++..+.+++.+|.+|+||||+|+..|+.++|++|+++|++++.         .+..
T Consensus         1 n~pLh~A~~~g~---~~--~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~---------~~~~   66 (229)
T d1ixva_           1 NYPLHQACMENE---FF--KVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL---------DDYP   66 (229)
T ss_dssp             CCHHHHHHHHTC---HH--HHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCG---------GGCC
T ss_pred             CHhHHHHHHcCC---HH--HHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccc---------cccc
Confidence            689999999999   88  999999988888999999999999999999999999999998876531         1235


Q ss_pred             ccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcc-cccCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 039828           94 NVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNAS-YLMNVDCKSPLYLAVESKNEDILEYILEALP  172 (626)
Q Consensus        94 ~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  172 (626)
                      +..|.+|+|+++.       .+.          .++++.++..+.... ...+..+.||++.++..++.+++++|++.+.
T Consensus        67 ~~~~~~~~~~~~~-------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~  129 (229)
T d1ixva_          67 DDSGWTPFHIACS-------VGN----------LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA  129 (229)
T ss_dssp             CTTSCCHHHHHHH-------HTC----------HHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ccccccccccccc-------ccc----------cccccccccccccccccccccccccccccccccchhhhhhhhhhhcc
Confidence            6667777777776       666          667776666655432 2345556667777776666666666666654


Q ss_pred             CCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhc-CCCcccccCCCC
Q 039828          173 VNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEI-NPDSVLQKNEEG  251 (626)
Q Consensus       173 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g  251 (626)
                      .  ....+..|.||||.|+..|+.++++.|++.++..++.+|.+|+||||+|+..|+.+++++|++. |++ ++.+|.+|
T Consensus       130 ~--~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad-~~~~d~~g  206 (229)
T d1ixva_         130 S--VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKG  206 (229)
T ss_dssp             C--SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCCCTTS
T ss_pred             c--ccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCC-CCCcCCCC
Confidence            2  2334445666666666666666666666665555555666666666666666666666666643 444 55556666


Q ss_pred             ChHHHHHHhcCChHHHHHHHhccC
Q 039828          252 LYPFHLASANGCVPVMGEFLEKEN  275 (626)
Q Consensus       252 ~tpLh~A~~~g~~~~v~~Ll~~g~  275 (626)
                      +||||+|+.   .+++++|+++|.
T Consensus       207 ~t~l~~A~~---~~~~~~Ll~~g~  227 (229)
T d1ixva_         207 AKAEDVALN---EQVKKFFLNNVV  227 (229)
T ss_dssp             CCTGGGCSC---HHHHHHHHHHCC
T ss_pred             CCHHHHHhh---HHHHHHHHHcCC
Confidence            666666552   355566665543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.98  E-value=1.6e-32  Score=271.78  Aligned_cols=264  Identities=15%  Similarity=0.187  Sum_probs=171.5

Q ss_pred             CcHHHHHHhc-CCCccccHHHHHHHHhhCcccccccc-cCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHH
Q 039828           14 NTLLHIAAAG-SIRNHENMAMATTLARKYPFLITMQN-SKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLME   91 (626)
Q Consensus        14 ~t~LH~Aa~~-g~~~~~~~~~v~~Ll~~~~~~l~~~d-~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~   91 (626)
                      +||||+++.. |+   .+  +++.|.+.+.+   ..| .+|+||||+||..|+.++|++|+.+.....    ......++
T Consensus         1 ~~p~~~~~~~~~~---~~--~~~~l~~~~~n---~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~----l~~Gadvn   68 (277)
T d2fo1e1           1 ESPIKLHTEAAGS---YA--ITEPITRESVN---IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC----IAAGADVN   68 (277)
T ss_dssp             CCCCHHHHHHHSS---SC--CCSCCSTTTTT---TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHH----HHTCCCTT
T ss_pred             CChHHHHHHhCCC---HH--HHHHHHhcCCC---cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHH----HHcCCCcc
Confidence            5899977754 55   56  66666666543   334 469999999999999999998875431000    00000123


Q ss_pred             hhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 039828           92 MKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEAL  171 (626)
Q Consensus        92 ~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  171 (626)
                      .+|.+|+||||+|+.       .++          .+++++|+++|++++ .+|.+|.|||++|+..++.++++++....
T Consensus        69 ~~d~~G~TpLh~A~~-------~g~----------~~iv~~Ll~~Gad~n-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  130 (277)
T d2fo1e1          69 AMDCDENTPLMLAVL-------ARR----------RRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNST  130 (277)
T ss_dssp             CCCTTSCCHHHHHHH-------HTC----------HHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSH
T ss_pred             ccCCCCCeeeccccc-------ccc----------ccccccccccccccc-cccccccccccchhhhcchhhhhhhhhcc
Confidence            455666666666666       555          666666666665554 44555666666666666665555554421


Q ss_pred             CCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCH---HHHHHhhhcCC-------
Q 039828          172 PVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHL---EGVRFLYEINP-------  241 (626)
Q Consensus       172 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~---~~v~~Ll~~~~-------  241 (626)
                      ..                                 ...++..+..+.++.+.+...+..   ..+..+.+...       
T Consensus       131 ~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (277)
T d2fo1e1         131 KL---------------------------------KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA  177 (277)
T ss_dssp             HH---------------------------------HHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG
T ss_pred             cc---------------------------------cccccccccccchhHHHHHhccccccccccccccccccccccccc
Confidence            10                                 011223344444444444443322   22222222211       


Q ss_pred             CcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCC
Q 039828          242 DSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMD  321 (626)
Q Consensus       242 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d  321 (626)
                      ......+..|.||||.++..++.++++.++..  .....+.+|..|+||||+|+..|+.+++++|+++|    +++|.+|
T Consensus       178 ~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~--~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g----adin~~d  251 (277)
T d2fo1e1         178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE--KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG----ASVEAVD  251 (277)
T ss_dssp             GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH--SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT----CCSSCCC
T ss_pred             ccccccccCCCCcccccccccccccccccccc--ccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCc----CCCCCcC
Confidence            11334567889999999999999999887763  33445566889999999999999999999999998    8899999


Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHhhC
Q 039828          322 DDGNTPLHLAALYGHYFVAVILGKD  346 (626)
Q Consensus       322 ~~G~TpLhlA~~~~~~~iv~~Ll~~  346 (626)
                      .+|+||||+|++.|+.+++++|++.
T Consensus       252 ~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         252 ATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             SSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999999999999864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.9e-31  Score=252.41  Aligned_cols=225  Identities=19%  Similarity=0.197  Sum_probs=194.6

Q ss_pred             CCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCc-
Q 039828           98 NTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDD-  176 (626)
Q Consensus        98 ~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~-  176 (626)
                      +||||+|+.       .++          .++++.|++.++.....+|.+|+||||+|+..|+.+++++|++.++.... 
T Consensus         1 n~pLh~A~~-------~g~----------~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~   63 (229)
T d1ixva_           1 NYPLHQACM-------ENE----------FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD   63 (229)
T ss_dssp             CCHHHHHHH-------HTC----------HHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGG
T ss_pred             CHhHHHHHH-------cCC----------HHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccc
Confidence            689999999       999          99999999877766668899999999999999999999999998875432 


Q ss_pred             cccccCCCCHHHHHHHhCCHHHHHHHHhcCCc-cccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHH
Q 039828          177 CDAKLEGKSPVKVAIELQKLGLLKMMHDKQPA-LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPF  255 (626)
Q Consensus       177 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  255 (626)
                      ...+..|.+|+|.++..+..++++.++..+.. .....+..+.||++.++..++.++++.|++.+.. ....|..|+|||
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l  142 (229)
T d1ixva_          64 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPL  142 (229)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc-ccccCCCCCCcc
Confidence            24456789999999999999999998877632 3555678889999999999999999999998877 677889999999


Q ss_pred             HHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHc-CCcchhhcccCCCCCCCHHHHHHHh
Q 039828          256 HLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEA-SDLTDKLINEMDDDGNTPLHLAALY  334 (626)
Q Consensus       256 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~-~~~~~~~in~~d~~G~TpLhlA~~~  334 (626)
                      |.|+..|+.+++++|++.  .+...+.+|.+|+||||+|+.+|+.+++++|++. |    ++++.+|.+|+||||+|+  
T Consensus       143 ~~a~~~~~~~~~~~Ll~~--~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~g----ad~~~~d~~g~t~l~~A~--  214 (229)
T d1ixva_         143 HRAASVGSLKLIELLCGL--GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG----AEYDLVDNKGAKAEDVAL--  214 (229)
T ss_dssp             HHHHHHTCHHHHHHHHTT--TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----CCSCCCCTTSCCTGGGCS--
T ss_pred             chhhhccccccccccccc--ccccccccccccCCchhhhcccccHHHHHHHHHhcC----CCCCCcCCCCCCHHHHHh--
Confidence            999999999999999984  4455667789999999999999999999999964 6    789999999999999998  


Q ss_pred             CCHHHHHHHhhCCCCc
Q 039828          335 GHYFVAVILGKDGRAE  350 (626)
Q Consensus       335 ~~~~iv~~Ll~~g~~d  350 (626)
                       +.+++++|++.| +|
T Consensus       215 -~~~~~~~Ll~~g-~d  228 (229)
T d1ixva_         215 -NEQVKKFFLNNV-VD  228 (229)
T ss_dssp             -CHHHHHHHHHHC-CC
T ss_pred             -hHHHHHHHHHcC-CC
Confidence             458999999988 65

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=2.4e-30  Score=258.22  Aligned_cols=237  Identities=19%  Similarity=0.228  Sum_probs=127.2

Q ss_pred             CCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHH
Q 039828           11 PSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLM   90 (626)
Q Consensus        11 ~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l   90 (626)
                      .+|.|+||.||..|+   .+  +|++|+++|++ ++.+|.+|.||||+|+.+|+.++|++|++++.+..           
T Consensus        38 ~~~~t~l~~A~~~G~---~~--~v~~Ll~~Gad-vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~-----------  100 (291)
T d1s70b_          38 FDDGAVFLAACSSGD---TE--EVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANIN-----------  100 (291)
T ss_dssp             ECHHHHHHHHHHHTC---HH--HHHHHHHHCCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-----------
T ss_pred             CCCchHHHHHHHcCC---HH--HHHHHHHCCCC-CCccCCCCCcHHHHHHhcCCceeeeeecccccccc-----------
Confidence            344566666666666   55  66666665554 55566666666666666666666666666554331           


Q ss_pred             HhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 039828           91 EMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEA  170 (626)
Q Consensus        91 ~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  170 (626)
                       ..+..+.|||+.++.       .++          .++++.|++++.... ..+..+.+|+++|+..++.+.++.++..
T Consensus       101 -~~~~~~~~~L~~a~~-------~~~----------~~~~~~l~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~ll~~  161 (291)
T d1s70b_         101 -QPDNEGWIPLHAAAS-------CGY----------LDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNR  161 (291)
T ss_dssp             -CCCTTSCCHHHHHHH-------HTC----------HHHHHHHHHTTCCTT-CCCTTSCCHHHHCCSHHHHHHHHHHHHH
T ss_pred             -ccccccccccccccc-------ccc----------cchhhcccccCcccc-cccccCccccccccccccchhccccccc
Confidence             234445555555555       555          555555555554443 3445555555555555555555555443


Q ss_pred             CCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCC
Q 039828          171 LPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEE  250 (626)
Q Consensus       171 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~  250 (626)
                                                         ...........+..+.+       ......+.....+ ....+..
T Consensus       162 -----------------------------------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~  198 (291)
T d1s70b_         162 -----------------------------------QGVDIEAARKEEERIML-------RDARQWLNSGHIN-DVRHAKS  198 (291)
T ss_dssp             -----------------------------------HTCCHHHHHHHHHHHHH-------HHHHHHHHHTCCC-CCCCTTT
T ss_pred             -----------------------------------ccccccccccccccccc-------ccchhhhcccccc-cccccCC
Confidence                                               21111111110111111       1111122222222 3445556


Q ss_pred             CChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHH
Q 039828          251 GLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHL  330 (626)
Q Consensus       251 g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhl  330 (626)
                      |.||||.|+..|+.++++.|++.|.+++   .++..|+||||+|+..|+.+++++|+++|    +++|.+|.+|+||||+
T Consensus       199 g~t~L~~a~~~~~~~~~~~Ll~~g~din---~~~~~g~TpL~~A~~~g~~~iv~lLl~~G----adv~~~d~~G~TaL~~  271 (291)
T d1s70b_         199 GGTALHVAAAKGYTEVLKLLIQARYDVN---IKDYDGWTPLHAAAHWGKEEACRILVENL----CDMEAVNKVGQTAFDV  271 (291)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTT---CCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCTTTS
T ss_pred             CCChhhHHHHcCChhhhcccccceeccc---ccccCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHHHH
Confidence            6677777777777777777776554433   34666777777777777777777777766    6667777777777777


Q ss_pred             HHH
Q 039828          331 AAL  333 (626)
Q Consensus       331 A~~  333 (626)
                      |++
T Consensus       272 A~e  274 (291)
T d1s70b_         272 ADE  274 (291)
T ss_dssp             CCS
T ss_pred             HHH
Confidence            764

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=1.1e-29  Score=251.25  Aligned_cols=236  Identities=17%  Similarity=0.182  Sum_probs=152.9

Q ss_pred             cccc-CCCCcHHHHHHhcCCCccccHHHHHHHHh--------hCcccccccccCCCcHHHHHHHcCCHHHHHHHHHcccc
Q 039828            7 TITS-PSGNTLLHIAAAGSIRNHENMAMATTLAR--------KYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKR   77 (626)
Q Consensus         7 ~~~~-~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~--------~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~   77 (626)
                      +.++ .+|+||||+||..|+   .+  ++++|+.        +|.+ ++.+|.+|+||||+|+..|+.++|++|+++|++
T Consensus        26 n~~~~~~g~T~Lh~A~~~g~---~~--~v~~Ll~~~~~~~l~~Gad-vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad   99 (277)
T d2fo1e1          26 NIIDPRHNRTVLHWIASNSS---AE--KSEDLIVHEAKECIAAGAD-VNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD   99 (277)
T ss_dssp             TTCCCSSCCCHHHHHHCTTC---CS--CCTTHHHHHHHHHHHTCCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CcCCCCCCccHHHHHHHcCC---HH--HHHHHHhcchhHHHHcCCC-ccccCCCCCeeeccccccccccccccccccccc
Confidence            3445 569999999999999   88  7877754        4444 889999999999999999999999999999987


Q ss_pred             CCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCc--ccccCCCCCcHHHHH
Q 039828           78 MTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNA--SYLMNVDCKSPLYLA  155 (626)
Q Consensus        78 ~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~--~~~~~~~g~tpL~~A  155 (626)
                      ++            .+|.+|.|||++|+.       .++          .++.+.+.......  ....+..+.++.+.+
T Consensus       100 ~n------------~~~~~g~t~l~~a~~-------~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  150 (277)
T d2fo1e1         100 PT------------IYNKSERSALHQAAA-------NRD----------FGMMVYMLNSTKLKGDIEELDRNGMTALMIV  150 (277)
T ss_dssp             SC------------CCCTTCCCHHHHHHH-------TTC----------HHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred             cc------------cccccccccccchhh-------hcc----------hhhhhhhhhcccccccccccccccchhHHHH
Confidence            63            478899999999999       888          88888887764321  124577888999999


Q ss_pred             HHcCCHH---HHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHH
Q 039828          156 VESKNED---ILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEG  232 (626)
Q Consensus       156 ~~~g~~~---~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~  232 (626)
                      ...+..+   .+..+.+.........                            ....+..+..|.||||+++..++.+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~g~t~L~~~~~~~~~~~  202 (277)
T d2fo1e1         151 AHNEGRDQVASAKLLVEKGAKVDYDG----------------------------AARKDSEKYKGRTALHYAAQVSNMPI  202 (277)
T ss_dssp             HHSCSTTHHHHHHHHHHHTCCSSCCS----------------------------GGGTSSSSCCCCCTHHHHHSSCCHHH
T ss_pred             Hhcccccccccccccccccccccccc----------------------------cccccccccCCCCccccccccccccc
Confidence            8877654   3333334322111000                            01122334455555555555555555


Q ss_pred             HHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHH
Q 039828          233 VRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE  308 (626)
Q Consensus       233 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~  308 (626)
                      ++.++.......+.+|..|.||||+|+..|+.+++++|+++|+++   +.+|.+|+||||+|+++|+.+++++|++
T Consensus       203 ~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadi---n~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         203 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV---EAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS---SCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            555444333334445555555555555555555555555544333   2235555555555555555555555543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=2.6e-30  Score=257.86  Aligned_cols=237  Identities=24%  Similarity=0.229  Sum_probs=168.7

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHH
Q 039828           50 SKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSL  129 (626)
Q Consensus        50 ~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i  129 (626)
                      ..|.||||.||..|+.++|++|+++|++++            .+|.+|.||||+|+.       .++          .++
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn------------~~d~~G~T~L~~A~~-------~g~----------~ei   88 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADIN------------YANVDGLTALHQACI-------DDN----------VDM   88 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTT------------CBCTTCCBHHHHHHH-------TTC----------HHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCC------------ccCCCCCcHHHHHHh-------cCC----------cee
Confidence            345688999999899998888888887652            355555555555555       555          555


Q ss_pred             HHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCcc
Q 039828          130 ARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPAL  209 (626)
Q Consensus       130 ~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  209 (626)
                      +++|++++.+.. ..+.                                   .+.+||+.++..++.++++.|++.+ ..
T Consensus        89 v~~Ll~~~~~~~-~~~~-----------------------------------~~~~~L~~a~~~~~~~~~~~l~~~~-~~  131 (291)
T d1s70b_          89 VKFLVENGANIN-QPDN-----------------------------------EGWIPLHAAASCGYLDIAEYLISQG-AH  131 (291)
T ss_dssp             HHHHHHTTCCTT-CCCT-----------------------------------TSCCHHHHHHHHTCHHHHHHHHHTT-CC
T ss_pred             eeeecccccccc-cccc-----------------------------------cccccccccccccccchhhcccccC-cc
Confidence            555555544433 2233                                   4555566666666666666666555 44


Q ss_pred             ccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCch
Q 039828          210 LLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQN  289 (626)
Q Consensus       210 ~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t  289 (626)
                      .+..|..+.+|+++|+..+..+.++.++.............+..+.+       ......+...   .......+..|.|
T Consensus       132 ~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~---~~~~~~~~~~g~t  201 (291)
T d1s70b_         132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML-------RDARQWLNSG---HINDVRHAKSGGT  201 (291)
T ss_dssp             TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-------HHHHHHHHHT---CCCCCCCTTTCCC
T ss_pred             cccccccCccccccccccccchhcccccccccccccccccccccccc-------ccchhhhccc---ccccccccCCCCC
Confidence            55567888999999999999999999887544322221111111111       1222233331   2223345788999


Q ss_pred             HHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHH
Q 039828          290 ILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQ  367 (626)
Q Consensus       290 ~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~  367 (626)
                      |||+|+..|+.+++++|++.|    +++|.+|.+|+||||+|+..|+.+++++|+++| +|++.+|+.|+||||+|++
T Consensus       202 ~L~~a~~~~~~~~~~~Ll~~g----~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~G-adv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         202 ALHVAAAKGYTEVLKLLIQAR----YDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTT----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCS
T ss_pred             hhhHHHHcCChhhhcccccce----ecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHH
Confidence            999999999999999999998    789999999999999999999999999999999 9999999999999999975

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.5e-27  Score=224.18  Aligned_cols=218  Identities=19%  Similarity=0.189  Sum_probs=120.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHH----hCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhh
Q 039828          147 DCKSPLYLAVESKNEDILEYILE----ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMH  222 (626)
Q Consensus       147 ~g~tpL~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh  222 (626)
                      +|+||||+|+..|+.++++.|++    .+.  +....+..|.||||+|+..|+.++++.|++.+ ...+..+..|.++++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~--~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~~~   78 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGR--ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG-ASPMALDRHGQTAAH   78 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTC--CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCccCCCCCccceehhccccccccccccccc-ccccccccccccccc
Confidence            35555555555555555555443    222  22233344555555555555555555555544 344444555555555


Q ss_pred             HHhhCCCHHHHHHhhhcCCC---cccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCC
Q 039828          223 WAASVDHLEGVRFLYEINPD---SVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGR  299 (626)
Q Consensus       223 ~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  299 (626)
                      .|...++.++++.+......   ..+.......++++.+.........+.+..  .........+..+.++|+.|+..+.
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~l~~a~~~~~  156 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE--RGADIDAVDIKSGRSPLIHAVENNS  156 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhc--cccccccccccchhhHHHHHHHhhh
Confidence            55555555555544433221   122334445566666666666666666655  2233333345556666666666666


Q ss_pred             hHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccc
Q 039828          300 DVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIP  374 (626)
Q Consensus       300 ~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~  374 (626)
                      ..+++.+++.+    ..++.+|..|+||||+|+..|+.+++++|++.| +|++.+|.+|+||||+|++.++.+++
T Consensus       157 ~~~~~~~~~~~----~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~G-ad~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         157 LSMVQLLLQHG----ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             HHHHHHHHHTT----CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             hhhhhhhhhhc----cccccccccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhCCCcccc
Confidence            66666666665    555666666666666666666666666666666 66666666666666666666555443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.5e-27  Score=224.13  Aligned_cols=205  Identities=19%  Similarity=0.158  Sum_probs=176.6

Q ss_pred             HHHHHHhh----cCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHH
Q 039828          127 DSLARSLV----SEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMM  202 (626)
Q Consensus       127 ~~i~~~Ll----~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  202 (626)
                      .++++.|+    +.+.+++ ..|.+|+||||+|+..|+.+++++|++.++..  ......+.++++.|...++.++++.+
T Consensus        16 ~~~v~~Ll~~~~~~g~~in-~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~--~~~~~~~~~~~~~a~~~~~~~~~~~~   92 (228)
T d1k1aa_          16 LPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASP--MALDRHGQTAAHLACEHRSPTCLRAL   92 (228)
T ss_dssp             HHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCC-ccCCCCCccceehhcccccccccccccccccc--cccccccccccccccccccccchhhh
Confidence            45556555    5788886 78899999999999999999999999998743  34555789999999999999999988


Q ss_pred             HhcCCcc---ccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCC
Q 039828          203 HDKQPAL---LLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHP  279 (626)
Q Consensus       203 l~~~~~~---~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~  279 (626)
                      .......   .+.......++|+.+.........+.|.....+.....+..+.+|++.|+..+..++++.++++|...  
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~--  170 (228)
T d1k1aa_          93 LDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV--  170 (228)
T ss_dssp             HHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--
T ss_pred             hhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhcccc--
Confidence            7765322   34456677899999999999999999999888767778889999999999999999999999976444  


Q ss_pred             cccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHH
Q 039828          280 NELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAV  341 (626)
Q Consensus       280 ~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~  341 (626)
                       +.+|..|+||||+|+.+|+.+++++|++.|    +++|.+|.+|+||||+|+++|+.+++|
T Consensus       171 -~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~G----ad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         171 -NAQMYSGSSALHSASGRGLLPLVRTLVRSG----ADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             -TCBCTTSCBHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             -ccccccCcchHHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHhCCCccccC
Confidence             445899999999999999999999999998    889999999999999999999998875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-27  Score=227.52  Aligned_cols=192  Identities=17%  Similarity=0.194  Sum_probs=140.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHH----HccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcH
Q 039828           51 KGDTPLHVAARDGMLQTAKILV----DCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL  126 (626)
Q Consensus        51 ~G~TpLh~Aa~~g~~~iv~~Ll----~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~  126 (626)
                      +|+||||+|+..|+.++++.|+    ..+++            ++.+|.+|+||||+|+.       .++          
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~------------in~~d~~g~TpLh~A~~-------~~~----------   51 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF------------LNFQNNLQQTPLHLAVI-------TNQ----------   51 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC------------CCCCCTTCCCHHHHHHH-------TTC----------
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC------------cccCCCCCCcccccccc-------ccc----------
Confidence            5899999999999876555444    44443            35589999999999999       888          


Q ss_pred             HHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCc----cccccCCCCHHHHHHHhCCHHHHHHH
Q 039828          127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDD----CDAKLEGKSPVKVAIELQKLGLLKMM  202 (626)
Q Consensus       127 ~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~g~t~L~~A~~~g~~~~v~~L  202 (626)
                      .+++++|+++++++. ..|..|.|||++++..|+.++++.+++.+.....    ......|.||+|.|+..++.++++++
T Consensus        52 ~~iv~~L~~~g~d~~-~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l  130 (221)
T d1iknd_          52 PEIAEALLGAGCDPE-LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL  130 (221)
T ss_dssp             HHHHHCCCSCCCCSC-CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeee
Confidence            999999999999987 7899999999999999999999999986543211    12233466777777777777777777


Q ss_pred             HhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhc
Q 039828          203 HDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK  273 (626)
Q Consensus       203 l~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  273 (626)
                      +..+.......+.+|.||||+|+..|+.+++++|++++++ ++.+|.+|.||||+|+..++.+++++|++.
T Consensus       131 ~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         131 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             cccCcccccccccCCCCccccccccccHHHHHHHHhcCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            7666444444445667777777777777777777777666 666677777777777777777777766663

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-27  Score=227.22  Aligned_cols=194  Identities=19%  Similarity=0.204  Sum_probs=164.6

Q ss_pred             CCCcHHHHHHhcCCCccccHHHHH----HHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhh
Q 039828           12 SGNTLLHIAAAGSIRNHENMAMAT----TLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVK   87 (626)
Q Consensus        12 ~g~t~LH~Aa~~g~~~~~~~~~v~----~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~   87 (626)
                      +|+||||+|+..|+   .+  +++    ++...+. +++.+|.+|+||||+||..|+.+++++|++.|+++.        
T Consensus         1 dG~t~Lh~A~~~g~---~~--~~~~li~~~~~~~~-~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~--------   66 (221)
T d1iknd_           1 DGDSFLHLAIIHEE---KA--LTMEVIRQVKGDLA-FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE--------   66 (221)
T ss_dssp             CCCCTTHHHHHTTC---SS--SSSCCCC-----CC-CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC--------
T ss_pred             CCChHHHHHHHcCC---HH--HHHHHHHHHHhCCC-CcccCCCCCCcccccccccccccccccccccccccc--------
Confidence            69999999999998   55  444    4444444 489999999999999999999999999999998763        


Q ss_pred             HHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCc-----ccccCCCCCcHHHHHHHcCCHH
Q 039828           88 FLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNA-----SYLMNVDCKSPLYLAVESKNED  162 (626)
Q Consensus        88 ~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~~g~~~  162 (626)
                          .+|..|.||||.++.       .++          .++++.+++.+...     .......|.||||.|+..++.+
T Consensus        67 ----~~d~~g~t~l~~~~~-------~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~  125 (221)
T d1iknd_          67 ----LRDFRGNTPLHLACE-------QGC----------LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG  125 (221)
T ss_dssp             ----CCCTTCCCHHHHHHH-------HTC----------HHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHH
T ss_pred             ----ccccccccccccccc-------ccc----------ccccchhhhhcccccccccccccccccchhhhHHhhcCChh
Confidence                478999999999999       888          99999998875442     2344567899999999999999


Q ss_pred             HHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCC
Q 039828          163 ILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD  242 (626)
Q Consensus       163 ~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (626)
                      +++++++.+.... ...+..|.||||.|+..|+.+++++|++.+ .+++.+|.+|.||||+|+..++.+++++|++...+
T Consensus       126 ~~~~l~~~~~~~~-~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~g-ad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         126 IVELLVSLGADVN-AQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHHTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             heeeecccCcccc-cccccCCCCccccccccccHHHHHHHHhcC-CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            9999999877433 233457999999999999999999999998 77999999999999999999999999999998655

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=1e-26  Score=219.52  Aligned_cols=207  Identities=17%  Similarity=0.202  Sum_probs=146.8

Q ss_pred             HHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcC
Q 039828          127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQ  206 (626)
Q Consensus       127 ~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  206 (626)
                      .|+++.|+++|++++...|.+|.||||+||..|+.+++++|++.++..  ...+..+.++++.++..++...........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~--n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA--NSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc--cccccccccccccccccccccccccccccc
Confidence            477888888888876556778888888888888888888888876633  344456777777777777777666666655


Q ss_pred             CccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCC
Q 039828          207 PALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNK  286 (626)
Q Consensus       207 ~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~  286 (626)
                      ..........|.++.+.+.........+.|...+.+ .+..+..|.|||+.++..+..++++.+++++.++   +.+|..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~---~~~d~~  155 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKTALHWAAAVNNTEAVNILLMHHANR---DAQDDK  155 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTT
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhccc-ccccCCCCCCcchhhcccCcceeeeeeccccccc---cccccc
Confidence            444555556667777777777777777777776665 5666777777777777777777777777754333   344667


Q ss_pred             CchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHH
Q 039828          287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL  343 (626)
Q Consensus       287 g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~L  343 (626)
                      |.||||+|+.+|+.+++++|++.|    +++|.+|..|+||||+|+++|+.++|++|
T Consensus       156 g~TpL~~A~~~g~~~~v~~Ll~~g----ad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         156 DETPLFLAAREGSYEASKALLDNF----ANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccchhccccHHHHHHHHHHCC----CCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            777777777777777777777776    66777777777777777777777777765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=2.5e-26  Score=216.87  Aligned_cols=204  Identities=21%  Similarity=0.200  Sum_probs=127.8

Q ss_pred             HHHHHHhhCcccccc-cccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhh
Q 039828           33 MATTLARKYPFLITM-QNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDA  111 (626)
Q Consensus        33 ~v~~Ll~~~~~~l~~-~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~  111 (626)
                      +|++|+++|++ ++. .|.+|+||||+||..|+.++|++|++.|+++            +.++..+.++++.++.     
T Consensus         4 ~v~~Ll~~g~d-in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~------------n~~~~~~~~~~~~~~~-----   65 (209)
T d1ot8a_           4 VISDLLAQGAE-LNATMDKTGETSLHLAARFARADAAKRLLDAGADA------------NSQDNTGRTPLHAAVA-----   65 (209)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHH-----
T ss_pred             HHHHHHHCCCC-cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc------------cccccccccccccccc-----
Confidence            88888888886 665 5888888888888888888888888888765            3467777778777776     


Q ss_pred             hccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHH
Q 039828          112 KKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAI  191 (626)
Q Consensus       112 ~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~  191 (626)
                        ..+          .....................|.++.+.+.........+.|.+.+..  ....+..|.|||+.++
T Consensus        66 --~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~--~~~~~~~~~t~l~~~~  131 (209)
T d1ot8a_          66 --ADA----------MGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD--INAADNSGKTALHWAA  131 (209)
T ss_dssp             --TTC----------HHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC--TTCBCTTSCBHHHHHH
T ss_pred             --ccc----------cccccccccccccccccccccccccccccccccchhhhhhhhhhccc--ccccCCCCCCcchhhc
Confidence              555          44444444444444434555566666666666666666666665442  2223344555666666


Q ss_pred             HhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHH
Q 039828          192 ELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEF  270 (626)
Q Consensus       192 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~L  270 (626)
                      ..+..++++.+++.+ ..++..|..|.||||+|+..|+.+++++|++++++ ++..|..|.||||+|+++|+.++|++|
T Consensus       132 ~~~~~~~~~~l~~~~-~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         132 AVNNTEAVNILLMHH-ANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccCcceeeeeecccc-ccccccccccccccchhccccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            555555555555554 34455555555555555555555555555555555 445555555555555555555555543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=1.1e-29  Score=259.50  Aligned_cols=276  Identities=15%  Similarity=0.089  Sum_probs=202.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHH
Q 039828           52 GDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLAR  131 (626)
Q Consensus        52 G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~  131 (626)
                      ..++++.+...+..++.+.+...+++.... .......++.++..|.||||+|++       +|+          .++++
T Consensus        46 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~t~L~~Aa~-------~g~----------~~~~~  107 (346)
T d2ajaa1          46 EAIHIFLPGTKNMEQVRQLLCLYYAHYNRN-AKQLWSDAHKKGIKSEVICFVAAI-------TGC----------SSALD  107 (346)
T ss_dssp             HHHHHCCCCSSHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHTCCHHHHHHHHHH-------HCC----------HHHHH
T ss_pred             hHHHHHHHhhccHHHHHHHHHHcchhhccc-hhhhhhHHHhccCCCCcHHHHHHH-------hCC----------HHHHH
Confidence            345555566666778888888777665432 223455678899999999999999       998          76665


Q ss_pred             ---HhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCc
Q 039828          132 ---SLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPA  208 (626)
Q Consensus       132 ---~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  208 (626)
                         .|++.+++++ ..|.+|.||||+||.+|+.++|++|++.++..+.......|.||||+|+..|+.+++++|++.++.
T Consensus       108 ~~~~L~~~~~~in-~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~  186 (346)
T d2ajaa1         108 TLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT  186 (346)
T ss_dssp             HHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGG
T ss_pred             HHHHHHhCCCccc-ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCc
Confidence               4888999887 678899999999999999999999999988554444445699999999999999999999998854


Q ss_pred             c--ccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcc------cccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCc
Q 039828          209 L--LLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSV------LQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPN  280 (626)
Q Consensus       209 ~--~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~------~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~  280 (626)
                      .  .+..+.++.||+|.|+.+|+.+++++|++.+++..      ......+.++++.+...+..+....+....... ..
T Consensus       187 ~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~-~~  265 (346)
T d2ajaa1         187 EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDG-VF  265 (346)
T ss_dssp             GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSS-CC
T ss_pred             ccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccc-cH
Confidence            3  34455677889999999999999999999876521      112334456666666665555544444321111 11


Q ss_pred             cccc-------CCCchHHHHHHHcCChHHHHHHHHcCCcc-hhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828          281 ELFN-------NKGQNILHVAAKKGRDVSVTHILEASDLT-DKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG  347 (626)
Q Consensus       281 ~~~d-------~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~-~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g  347 (626)
                      +..+       ..+.++++.|+..++.+++++|++.+... ....+..+.+|+||||+|++.|+.++|++|++.+
T Consensus       266 ~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         266 DLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP  340 (346)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             hHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCCC
Confidence            1111       12457888999999999999999886422 1234556678999999999999999999999764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=8.7e-27  Score=237.74  Aligned_cols=240  Identities=13%  Similarity=0.105  Sum_probs=118.8

Q ss_pred             cccCCCCcHHHHHHhcCCCccccHHHHHH---HHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccch
Q 039828            8 ITSPSGNTLLHIAAAGSIRNHENMAMATT---LARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQI   84 (626)
Q Consensus         8 ~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~---Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   84 (626)
                      .++.+|+|+||+||..|+   .+  ++++   |++.+.. ++.+|..|+||||+||++||.++|++|++.|+++.     
T Consensus        85 ~~~~~~~t~L~~Aa~~g~---~~--~~~~~~~L~~~~~~-in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~-----  153 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGC---SS--ALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI-----  153 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCC---HH--HHHHHTTC--CCSS-CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH-----
T ss_pred             hccCCCCcHHHHHHHhCC---HH--HHHHHHHHHhCCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc-----
Confidence            345556666666666666   54  4443   3444433 55666666666666666666666666666655431     


Q ss_pred             hhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCccc--ccCCCCCcHHHHHHHcCCHH
Q 039828           85 DVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASY--LMNVDCKSPLYLAVESKNED  162 (626)
Q Consensus        85 ~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~--~~~~~g~tpL~~A~~~g~~~  162 (626)
                           ....+.+|+||||+|+.       .|+          .+++++|++.++....  ..+.++.||++.|+.+|+.+
T Consensus       154 -----~~~~~~~g~t~L~~Aa~-------~g~----------~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~  211 (346)
T d2ajaa1         154 -----MAMIQAENYHAFRLAAE-------NGH----------LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN  211 (346)
T ss_dssp             -----HHHHSHHHHHHHHHHHH-------TTC----------HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred             -----ccccccCCCChhHHHHH-------Hhh----------HHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHH
Confidence                 11122345666666666       666          6666666666554321  12233445555555666666


Q ss_pred             HHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCC
Q 039828          163 ILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD  242 (626)
Q Consensus       163 ~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (626)
                      ++++|++.++..         .++.+.+...++                    .+.++++.+...+..+....+.....+
T Consensus       212 iv~~Ll~~ga~~---------~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~a~~~  262 (346)
T d2ajaa1         212 VINFLLDCPVML---------AYAEIHEFEYGE--------------------KYVNPFIARHVNRLKEMHDAFKLSNPD  262 (346)
T ss_dssp             HHHHHTTSHHHH---------HHHHHCTTTTTT--------------------TTHHHHHHHHHHHHHHHHTTTTTTSSS
T ss_pred             HHHHHHhCCCCc---------chHHHHHHHcCc--------------------HhhhHHHHHhhccchHHHHHHHHhccc
Confidence            666666543311         011111111122                    222333333333333322222221111


Q ss_pred             c-ccc-------cCCCCChHHHHHHhcCChHHHHHHHhccCCCCC--cccccCCCchHHHHHHHcCChHHHHHHHHc
Q 039828          243 S-VLQ-------KNEEGLYPFHLASANGCVPVMGEFLEKENMPHP--NELFNNKGQNILHVAAKKGRDVSVTHILEA  309 (626)
Q Consensus       243 ~-~~~-------~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~--~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~  309 (626)
                      . ...       ....+.++++.|+..|+.+++++|++.+.....  ....+.+|+||||+|+++|+.+++++|++.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         263 GVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             SCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             ccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            0 000       111234667777777777777777764432211  122345677888888888888888887765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.8e-24  Score=189.54  Aligned_cols=152  Identities=16%  Similarity=0.139  Sum_probs=136.1

Q ss_pred             CHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCCh
Q 039828          185 SPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCV  264 (626)
Q Consensus       185 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  264 (626)
                      +.|+.|+..|+.++++.|++.++.+++..|..|+||||+|+. |+.+++++|++.+.+ ++..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccc-ccccccccccccccccccccc
Confidence            458999999999999999998778899999999999998874 889999999999887 778888999999999999999


Q ss_pred             HHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHh
Q 039828          265 PVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILG  344 (626)
Q Consensus       265 ~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll  344 (626)
                      ++++.++++|.++   +.+|..|+||||+|+..|+.+++++|++ +    ++++.+|.+|+||||+|++.|+.+++++|+
T Consensus        82 ~~~~~~l~~~~~~---n~~~~~~~t~L~~A~~~~~~~i~~~L~~-~----~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  153 (156)
T d1bd8a_          82 DTLKVLVEHGADV---NVPDGTGALPIHLAVQEGHTAVVSFLAA-E----SDLHRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HHHHHHHHTTCCS---CCCCTTSCCHHHHHHHHTCHHHHHHHHT-T----SCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             ccccccccccccc---ccccCCCCeeeccccccccccccccccc-c----ccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999977554   3458899999999999999999998874 4    678999999999999999999999999998


Q ss_pred             hC
Q 039828          345 KD  346 (626)
Q Consensus       345 ~~  346 (626)
                      ++
T Consensus       154 ~h  155 (156)
T d1bd8a_         154 GH  155 (156)
T ss_dssp             TT
T ss_pred             hh
Confidence            75

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.6e-24  Score=190.23  Aligned_cols=154  Identities=21%  Similarity=0.249  Sum_probs=135.9

Q ss_pred             CHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCCh
Q 039828          185 SPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCV  264 (626)
Q Consensus       185 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  264 (626)
                      ++||.|+..|+.++++.|++.+ .+++.+|..|.||||+|+ .|+.+++++|++.+++ ++..+..|.+|++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g-~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~-~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSC-CCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC-CCcCccCCcccccccccc-cccccccccccccccc-cccccccCccccccccccccc
Confidence            6889999999999999999987 668889999999999876 7899999999999888 788889999999999999999


Q ss_pred             HHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHh
Q 039828          265 PVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILG  344 (626)
Q Consensus       265 ~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll  344 (626)
                      +.++.+++.+...   +..|..|.+|+|+|+..++.+++++|+++++   .+++.+|.+|+||||+|++.++.+++++|+
T Consensus        80 ~~~~~l~~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~---~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll  153 (156)
T d1ihba_          80 DTLQTLLEFQADV---NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEVVSLMQ  153 (156)
T ss_dssp             HHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccccccccccc---ccccccccccccccccccccccccccccccc---ccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999866443   4458889999999999999999999999872   468899999999999999999999999999


Q ss_pred             hCC
Q 039828          345 KDG  347 (626)
Q Consensus       345 ~~g  347 (626)
                      ++|
T Consensus       154 ~~G  156 (156)
T d1ihba_         154 ANG  156 (156)
T ss_dssp             HTC
T ss_pred             hcC
Confidence            876

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.2e-23  Score=185.72  Aligned_cols=154  Identities=20%  Similarity=0.150  Sum_probs=108.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHh
Q 039828           54 TPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSL  133 (626)
Q Consensus        54 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~L  133 (626)
                      +|||+||..|+.++|++|+++|+++            +.+|.+|.||||+|+        .++          .+++++|
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~------------n~~d~~g~TpL~~A~--------~~~----------~ei~~~L   52 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV------------NAQNGFGRTALQVMK--------LGN----------PEIARRL   52 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT------------TCCCTTSCCHHHHCC--------SSC----------HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc------------CccCCcccccccccc--------ccc----------ccccccc
Confidence            7888888888888888888888765            346778888888664        566          7788888


Q ss_pred             hcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCcccccc
Q 039828          134 VSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQ  213 (626)
Q Consensus       134 l~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~  213 (626)
                      +++++++. ..+..|.+|++.++..++.+.++.+++.+..  ....+..|.+|+|.|+..++.+++++|+++++.+.+.+
T Consensus        53 l~~~a~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  129 (156)
T d1ihba_          53 LLRGANPD-LKDRTGFAVIHDAARAGFLDTLQTLLEFQAD--VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR  129 (156)
T ss_dssp             HHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC
T ss_pred             cccccccc-cccccCccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccc
Confidence            88877766 5677777777777777777777777776552  23334456666666666666666666666665556666


Q ss_pred             CCCCCchhhHHhhCCCHHHHHHhhhcC
Q 039828          214 DEQMNTPMHWAASVDHLEGVRFLYEIN  240 (626)
Q Consensus       214 d~~g~tpLh~Aa~~g~~~~v~~Ll~~~  240 (626)
                      |..|.||||+|+..|+.+++++|+++|
T Consensus       130 d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         130 NHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            666666666666666666666666553

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=3.8e-23  Score=184.57  Aligned_cols=149  Identities=15%  Similarity=0.155  Sum_probs=72.3

Q ss_pred             CHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCCh
Q 039828          185 SPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCV  264 (626)
Q Consensus       185 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  264 (626)
                      ||||.|++.|+.++++.|++.++ ..+ .|..|+||||+|+..++.++++.++..... ....+..+.++++.++...+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga-~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGA-PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTC-CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCC-Ccc-cccCCCcccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence            45555555555555555555542 222 344555555555555555555555444433 233344444555555555555


Q ss_pred             HHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHH
Q 039828          265 PVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL  343 (626)
Q Consensus       265 ~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~L  343 (626)
                      +.++.+...+..+.   .+|.+|+||||+|+..|+.+++++|++.|    +++|.+|.+|+||||+|+.+|+.+++++|
T Consensus        81 ~~~~~l~~~~~~~~---~~~~~g~T~L~~A~~~g~~~iv~~ll~~g----ad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHGADVN---AKDMLKMTALHWATEHNHQEVVELLIKYG----ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccCCccc---cccccCchHHHhhhhcchhheeeeccccc----cCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            55555554332222   23445555555555555555555555554    44455555555555555555555555443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.5e-22  Score=180.67  Aligned_cols=150  Identities=24%  Similarity=0.221  Sum_probs=107.6

Q ss_pred             CchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHc
Q 039828          218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKK  297 (626)
Q Consensus       218 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~  297 (626)
                      .||||.|++.|+.++++.|++++++ .+ .|..|+||||+|+..++.+.++.++......   ...+..+.++++.++..
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~-~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~   77 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR---DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---TCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCC-cc-cccCCCccccccccccccccccccccccccc---ccccccccccccccccc
Confidence            3777777777777777777777765 33 5777777777777777777777777633222   23355667777777777


Q ss_pred             CChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhccccccccc
Q 039828          298 GRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFS  377 (626)
Q Consensus       298 ~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~~  377 (626)
                      .+.+.++++...+    .+.+.+|.+|+||||+|+..|+.+++++|++.| ++++.+|.+|.||+|+|+.+|+.++++++
T Consensus        78 ~~~~~~~~l~~~~----~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g-ad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          78 GHANIVEVLLKHG----ADVNAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccceeeecccccC----CccccccccCchHHHhhhhcchhheeeeccccc-cCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            7777777777776    566677777777777777777777777777777 77777777777777777777777766654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.4e-22  Score=181.56  Aligned_cols=151  Identities=18%  Similarity=0.199  Sum_probs=108.4

Q ss_pred             cHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhc
Q 039828           15 TLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKN   94 (626)
Q Consensus        15 t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~   94 (626)
                      ..||.||..|+   .+  +|++|+++++.+++.+|..|+||||+|+ .|+.+++++|++++.+++            ..+
T Consensus         4 ~~L~~Aa~~g~---~~--~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~------------~~~   65 (156)
T d1bd8a_           4 DRLSGAAARGD---VQ--EVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN------------VQD   65 (156)
T ss_dssp             HHHHHHHHHTC---HH--HHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT------------CCC
T ss_pred             HHHHHHHHcCC---HH--HHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccc------------ccc
Confidence            34888888888   77  8888888777678888888999998886 478888888888876542            356


Q ss_pred             cCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 039828           95 VRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVN  174 (626)
Q Consensus        95 ~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  174 (626)
                      ..|.+|++.++.       .++          .++++.+++++++++ .+|..|.||||+|+..|+.+++++|++ +.  
T Consensus        66 ~~~~~~l~~~~~-------~~~----------~~~~~~~l~~~~~~n-~~~~~~~t~L~~A~~~~~~~i~~~L~~-~~--  124 (156)
T d1bd8a_          66 TSGTSPVHDAAR-------TGF----------LDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAA-ES--  124 (156)
T ss_dssp             TTSCCHHHHHHH-------TTC----------HHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHT-TS--
T ss_pred             cccccccccccc-------ccc----------ccccccccccccccc-cccCCCCeeeccccccccccccccccc-cc--
Confidence            677777777777       777          777777777777766 466777777777777777777776663 22  


Q ss_pred             CccccccCCCCHHHHHHHhCCHHHHHHHHh
Q 039828          175 DDCDAKLEGKSPVKVAIELQKLGLLKMMHD  204 (626)
Q Consensus       175 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  204 (626)
                      +....+..|.||||+|+..|+.+++++|++
T Consensus       125 ~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_         125 DLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            223344456666666666666666666654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2e-23  Score=208.63  Aligned_cols=178  Identities=19%  Similarity=0.207  Sum_probs=113.7

Q ss_pred             ccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCH-------HHHHHhhhcCCCcccccCCCCC
Q 039828          180 KLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHL-------EGVRFLYEINPDSVLQKNEEGL  252 (626)
Q Consensus       180 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~-------~~v~~Ll~~~~~~~~~~d~~g~  252 (626)
                      +..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||.|+..++.       ++++++..    .....|..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~----~~~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP----CLILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG----GGGEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh----hhhhcccccC
Confidence            556778888888888888888888777 67777788888888888776542       33343332    2455677788


Q ss_pred             hHHHHHHhcCC----hH--------HHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccC
Q 039828          253 YPFHLASANGC----VP--------VMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEM  320 (626)
Q Consensus       253 tpLh~A~~~g~----~~--------~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~  320 (626)
                      ||||.++..+.    ..        ++..+.+.+.  .........+.++++.+...........+... ......+|.+
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~in~~  255 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN--RPIQSGTNEKESKPNDKNGERKDSILENLDLK-WIIANMLNAQ  255 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGG--CCEEEC----------------CHHHHHCSHH-HHHHHTTTCC
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCC--cchhcccccccchhHHHHhcchHHHHHHHhhH-HHHhcCccCC
Confidence            88887765443    22        3345555332  22233355566777766665554444332111 1112458999


Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHH
Q 039828          321 DDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAE  366 (626)
Q Consensus       321 d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~  366 (626)
                      |.+|+||||+|++.|+.+++++|+++| +|++++|+.|+||||+|+
T Consensus       256 D~~G~TpLh~A~~~g~~~iv~~Ll~~G-Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         256 DSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHcC
Confidence            999999999999999999999999999 999999999999999884

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.3e-22  Score=200.77  Aligned_cols=200  Identities=13%  Similarity=0.110  Sum_probs=132.4

Q ss_pred             HHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCH---HHHHHHH
Q 039828          127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKL---GLLKMMH  203 (626)
Q Consensus       127 ~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~---~~v~~Ll  203 (626)
                      .++...+...+.+++...|.+|+||||+||..|+.+++++|++.++  +....+..|.||||.|+..++.   +.++.++
T Consensus        86 ~~~~~~~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~ga--d~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll  163 (301)
T d1sw6a_          86 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS--NRLYGDNMGESCLVKAVKSVNNYDSGTFEALL  163 (301)
T ss_dssp             HHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHH
T ss_pred             HHHHhcCCccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCcCCcccccHHHHhhhcccchhhhhHHHHH
Confidence            3444444445566665558999999999999999999999999988  4455677899999999987652   1222333


Q ss_pred             hcCCccccccCCCCCchhhHHhhCCC----HH--------HHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHH
Q 039828          204 DKQPALLLIQDEQMNTPMHWAASVDH----LE--------GVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL  271 (626)
Q Consensus       204 ~~~~~~~~~~d~~g~tpLh~Aa~~g~----~~--------~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  271 (626)
                      +.........|..|+||||+++..+.    ..        ++.++...+..........+.++++.+........+..+.
T Consensus       164 ~~l~~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (301)
T d1sw6a_         164 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD  243 (301)
T ss_dssp             HHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS
T ss_pred             HHHhhhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHh
Confidence            33224467789999999998886443    33        3345555555545556666777777666555444443321


Q ss_pred             hccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHH
Q 039828          272 EKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA  332 (626)
Q Consensus       272 ~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~  332 (626)
                      ........++.+|.+|+||||+|+++|+.+++++|++.|    ++++.+|..|.||||+|+
T Consensus       244 ~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~G----Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         244 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG----ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT----CCTTCCCTTSCCGGGGTC
T ss_pred             hHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHcC
Confidence            100001224567999999999999999999999999998    889999999999999986

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.2e-21  Score=166.48  Aligned_cols=120  Identities=24%  Similarity=0.206  Sum_probs=87.8

Q ss_pred             CCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCc-hHHHHHH
Q 039828          217 MNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQ-NILHVAA  295 (626)
Q Consensus       217 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~-t~Lh~A~  295 (626)
                      +.++||+|+..|+.+++++|++++++ ++..|..|.||+|.|+ .|+.+++++|+++|.+++..   +..+. ||||+|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad-~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~---~~~~~~~~L~~A~   77 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA---DPATLTRPVHDAA   77 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC---CTTTCCCHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc-cccccccccccccccc-cccccccccccccccccccc---ccccccccccccc
Confidence            45677777777777777777777766 6667777777777553 57777777777766554433   44444 5888888


Q ss_pred             HcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhh
Q 039828          296 KKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGK  345 (626)
Q Consensus       296 ~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~  345 (626)
                      ++|+.+++++|++.|    ++++.+|.+|+||||+|+++|+.+++++|+.
T Consensus        78 ~~g~~~~v~~Ll~~g----a~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTLVVLHRAG----ARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHTCHHHHHHHHHHT----CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccc----cccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            888888888888877    6778888888888888888888888888764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=8e-22  Score=167.29  Aligned_cols=107  Identities=25%  Similarity=0.234  Sum_probs=93.2

Q ss_pred             ChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHH
Q 039828          252 LYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLA  331 (626)
Q Consensus       252 ~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA  331 (626)
                      .|||++|+++|+.++++.|+++|.+++   .+|..|+||||+|+.+++.+++++|++.|    +++|.+|.+|+||||+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n---~~~~~g~t~lh~A~~~~~~~~~~~ll~~g----~din~~d~~g~tpLh~A   75 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVN---RTLEGGRKPLHYAADCGQLEILEFLLLKG----ADINAPDKHHITPLLSA   75 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCC---CCSSSSCCTTHHHHHHSTTTHHHHHHHSS----CTTTCCSSSCSCHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccc---ccccccccccccccccccccccccccccc----ceeeecccccccchhhh
Confidence            478899999999999999998775554   45788999999999999999999999887    78888999999999999


Q ss_pred             HHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHH
Q 039828          332 ALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAE  366 (626)
Q Consensus       332 ~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~  366 (626)
                      +..|+.+++++|+++| +|++.+|++|+||+|+|.
T Consensus        76 ~~~~~~~~v~~Ll~~G-ad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          76 VYEGHVSCVKLLLSKG-ADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HTTTCCHHHHHHHTTC-CCSSSSSSSTCCCCCTCS
T ss_pred             hhcCchhhhhhhhccc-ccceeeCCCCCCHHHHHh
Confidence            9999999999999998 999999999999998873

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2.1e-21  Score=164.68  Aligned_cols=107  Identities=21%  Similarity=0.208  Sum_probs=95.8

Q ss_pred             CchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHc
Q 039828          218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKK  297 (626)
Q Consensus       218 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~  297 (626)
                      .|||++|++.|+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|+++|.+.+   .+|..|+||||+|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din---~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN---APDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT---CCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-cccccccccccccccccccccccccccccccceee---ecccccccchhhhhhc
Confidence            4799999999999999999999887 78889999999999999999999999999775544   4588999999999999


Q ss_pred             CChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHH
Q 039828          298 GRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAA  332 (626)
Q Consensus       298 ~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~  332 (626)
                      |+.+++++|+++|    +++|.+|.+|+||||+|.
T Consensus        79 ~~~~~v~~Ll~~G----ad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          79 GHVSCVKLLLSKG----ADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TCCHHHHHHHTTC----CCSSSSSSSTCCCCCTCS
T ss_pred             Cchhhhhhhhccc----ccceeeCCCCCCHHHHHh
Confidence            9999999999998    889999999999999883

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.5e-20  Score=158.09  Aligned_cols=120  Identities=10%  Similarity=0.050  Sum_probs=102.8

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCC-hHHHHHHhc
Q 039828          183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGL-YPFHLASAN  261 (626)
Q Consensus       183 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~  261 (626)
                      +.++||.|+..|+.+++++|++++ .+++.+|..|.||||+|+ .|+.+++++|++++++ ++..+..+. ||||+|++.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~g-ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcC-Cccccccccccccccccc-cccccccccccccccc-ccccccccccccccccccc
Confidence            568899999999999999999887 778888999999999665 6899999999999888 666666665 699999999


Q ss_pred             CChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHH
Q 039828          262 GCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILE  308 (626)
Q Consensus       262 g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~  308 (626)
                      |+.+++++|+++|.+++   .+|..|+||||+|+++|+.+++++|+.
T Consensus        80 g~~~~v~~Ll~~ga~~~---~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARLD---VRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCCSS---CCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccc---cccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999875544   458899999999999999999998865

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.4e-20  Score=158.76  Aligned_cols=121  Identities=18%  Similarity=0.181  Sum_probs=103.4

Q ss_pred             cHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhc
Q 039828           15 TLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKN   94 (626)
Q Consensus        15 t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~   94 (626)
                      ++||.||..|+   .+  ++++|++++.+ ++.+|.+|+||||+||..|+.+++++|++.++++            +.+|
T Consensus         3 ~lL~~A~~~G~---~~--~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~------------~~~d   64 (130)
T d1ycsb1           3 ALLLDSSLEGE---FD--LVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV------------NAAD   64 (130)
T ss_dssp             HHHHHHHHHTC---HH--HHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT------------TCCC
T ss_pred             HHHHHHHHcCC---HH--HHHHHHHcCCC-cccccccccccccccccccccccccccccccccc------------cccc
Confidence            67999999999   88  99999998876 8899999999999999999999999999988765            3478


Q ss_pred             cCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHHh
Q 039828           95 VRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLA--VESKNEDILEYILEA  170 (626)
Q Consensus        95 ~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~~v~~Ll~~  170 (626)
                      .+|+||||+|+.       .++          .+++++|+++|++++...+.+++||++++  +..|+.+++++|++.
T Consensus        65 ~~g~tpLh~A~~-------~g~----------~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          65 SDGWTPLHCAAS-------CNN----------VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             TTCCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             ccCcccccccch-------hhH----------HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            899999999998       888          99999999999888755556688887665  567888899988874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.6e-19  Score=155.73  Aligned_cols=120  Identities=16%  Similarity=0.069  Sum_probs=74.0

Q ss_pred             chhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcC
Q 039828          219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKG  298 (626)
Q Consensus       219 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~  298 (626)
                      ++|+.|+..|+.++++.|++++++ ++.+|.+|+||||+|+..|+.+++++|++.|.+.+   .+|.+|+||||+|+.+|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~---~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN---AADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT---CCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-ccccccccccccccccccccccccccccccccccc---cccccCcccccccchhh
Confidence            456666666666666666666665 55666666666666666666666666666554332   33666666666666666


Q ss_pred             ChHHHHHHHHcCCcchhhcccCCC-CCCCHHHHH--HHhCCHHHHHHHhhC
Q 039828          299 RDVSVTHILEASDLTDKLINEMDD-DGNTPLHLA--ALYGHYFVAVILGKD  346 (626)
Q Consensus       299 ~~~i~~~Ll~~~~~~~~~in~~d~-~G~TpLhlA--~~~~~~~iv~~Ll~~  346 (626)
                      +.+++++|+++|    ++++.++. +|+||++++  +..|+.+++++|+..
T Consensus        79 ~~~~v~~Ll~~g----a~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          79 NVQVCKFLVESG----AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             CHHHHHHHHHTT----CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcC----CCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            666666666666    55555543 466665554  345666666666653

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=4.1e-18  Score=150.84  Aligned_cols=120  Identities=18%  Similarity=0.212  Sum_probs=93.4

Q ss_pred             hhHHhhCCCHHHHHHhhhcCCCcc-----cccCCCCChHHHHHHhc---CChHHHHHHHhccCCCCCcccccCCCchHHH
Q 039828          221 MHWAASVDHLEGVRFLYEINPDSV-----LQKNEEGLYPFHLASAN---GCVPVMGEFLEKENMPHPNELFNNKGQNILH  292 (626)
Q Consensus       221 Lh~Aa~~g~~~~v~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh  292 (626)
                      |..|++.++...+..++..+.+..     ...+..|+||||+|++.   |+.+++++|+++|.++   +.+|..|+||||
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi---n~~d~~g~TpLh   86 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL---DKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT---TCCCTTCCCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh---hhhhhhhccccc
Confidence            445667777777777766655421     22366788899988864   6778888888877554   445888999999


Q ss_pred             HHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828          293 VAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG  347 (626)
Q Consensus       293 ~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g  347 (626)
                      +|+.+|+.+++++|++.|    ++++.+|.+|+||||+|++.|+.+++++|++.+
T Consensus        87 ~A~~~~~~~~v~~Ll~~g----ad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGK----ASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccccccccccccccC----ccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            999999999999999887    778888999999999999999999999888865

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.1e-17  Score=148.14  Aligned_cols=123  Identities=15%  Similarity=0.135  Sum_probs=77.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCc----cccccCCCCHHHHHHHh---CCHHHHHHHHhcCCccccccCCCCCchhhH
Q 039828          151 PLYLAVESKNEDILEYILEALPVNDD----CDAKLEGKSPVKVAIEL---QKLGLLKMMHDKQPALLLIQDEQMNTPMHW  223 (626)
Q Consensus       151 pL~~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~  223 (626)
                      .|+.|++.++...+..++..+.+...    ...+..|.||||+|+..   ++.+++++|++.+ .+++.+|..|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-adin~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC-CChhhhhhhhcccccc
Confidence            45677788888888777776543211    11234466666666653   4566666666665 4566666666666666


Q ss_pred             HhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccC
Q 039828          224 AASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKEN  275 (626)
Q Consensus       224 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~  275 (626)
                      |+..|+.+++++|++++++ ++.+|.+|.||||+|++.|+.+++++|++.+.
T Consensus        88 A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccccccccccccccccCcc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            6666666666666666665 55666666666666666666666666666443