Citrus Sinensis ID: 039858

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
MVSANQRFRLGFFNPPSTTTHYLAISYVKPHELGDDETDKLVWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDYPTDTFLPGMKLGINLEADKKWFLQSWITEESPAQGSFTLGVDPNFTNHLSIWWRGEFHSNIGLWRNGIFDSSGDSTISDFIFSYTSNKQEKYFTYSVKGNVTLFPRLRIMADGILATHNGKERLIEGYPVCRNASSDFKTITALSGDISNDGFTFKESDNMTINDCQLACQKNCSCIAFASPNENNKTGCQIWSEGTNFTDAVFANPVFTYRLIYIRETTAAGDSGERRRV
ccccccEEEEEccccccccccEEEEEEcccccccccccccEEEEcccccccccccEEEEEEcccccEEEEcccccEEEEccccccccccEEEEEccccEEEEEcccccccccEEEEEccccccccccccEEccEEcccccEEEEEEccccccccccEEEEEccccccEEEEEEccEEEEEEEcccccEEEEccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEEcccccEEEEcccccccccccccccccccEEEccccccccccccEEEcccccccHHHHHHHHHcccccccEEcccccccccEEEEcccccccccccccccccccEEEEEEccccccccccccc
ccccccEEEEEEEcccccccEEEEEEEEEccccccccccEEEEEEEcccccccccEEEEEEccccEEEEEcccccEEEEccccccccccHHHHHccccEEEEEcccccccccEEEEEcccccccccccccccccccccccHHEEccccccccccccEEEEEccccccEEEEEcccEEEEEccccccEEEccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEEcccccEEEEEEccHccccccccccccccccccccccccccccccEEcccccccHHHHHHHHHHccccEEEEEcccccccEEEEEcccHHHHHHHHcccccccccEEEEEEHHHHcccccccc
mvsanqrfrlgffnppstttHYLAISyvkphelgddetDKLVWIANrntpifdtsgsltidsndgnlkilhnggdpiavssipgagnntIAILQDSGNLVLQeanhdgstRRVLWqsfdyptdtflpgmklginLEADKKWFLQSWiteespaqgsftlgvdpnftnhlsiwwrgefhsniglwrngifdssgdstiSDFIFSYTSNKQEKYFTYSvkgnvtlfprLRIMADGilathngkerliegypvcrnassdfKTITAlsgdisndgftfkesdnmtinDCQLACqkncsciafaspnennktgcqiwsegtnftdavfanpvFTYRLIYIREttaagdsgerrrv
mvsanqrfrlgffnppsttTHYLAISYVKPHELGDDETDKLVWIANRNtpifdtsgsltiDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDYPTDTFLPGMKLGINLEADKKWFLQSWITEESPAQGSFTLGVDPNFTNHLSIWWRGEFHSNIGLWRNGIFDSSGDSTISDFIFSYTSNKQEKYFTYSVKGNVTLFPRLRIMADGILATHNGKERLIEGYPVCRNASSDFKTITALSGDISNDGFTFKESDNMTINDCQLACQKNCSCIAFASPNENNKTGCQIWSEGTNFTDAVFANPVFTYRLIYIrettaagdsgerrrv
MVSANQRFRLGFFNPPSTTTHYLAISYVKPHELGDDETDKLVWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDYPTDTFLPGMKLGINLEADKKWFLQSWITEESPAQGSFTLGVDPNFTNHLSIWWRGEFHSNIGLWRNGIFDSSGDSTISDFIFSYTSNKQEKYFTYSVKGNVTLFPRLRIMADGILATHNGKERLIEGYPVCRNASSDFKTITALSGDISNDGFTFKESDNMTINDCQLACQKNCSCIAFASPNENNKTGCQIWSEGTNFTDAVFANPVFTYRLIYIRETTAAGDSGERRRV
*******FRLGFFNPPSTTTHYLAISYVKPHELGDDETDKLVWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDYPTDTFLPGMKLGINLEADKKWFLQSWITEESPAQGSFTLGVDPNFTNHLSIWWRGEFHSNIGLWRNGIFDSSGDSTISDFIFSYTSNKQEKYFTYSVKGNVTLFPRLRIMADGILATHNGKERLIEGYPVCRNASSDFKTITALSGDISNDGFTFKESDNMTINDCQLACQKNCSCIAFASPNENNKTGCQIWSEGTNFTDAVFANPVFTYRLIYIRET************
MVSANQRFRLGFFNPPSTTTHYLAISYVKPHELGDDETDKLVWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDYPTDTFLPGMKLGINLEADKKWFLQSWITEESPAQGSFTLGVDPNFTNHLSIWWRGEFHSNIGLWRNGIFDSSGDSTISDFIFSYTSNKQEKYFTYSVKGNVTLFPRLRIMADGILATHNGKERLIEGYPVCRNASSDFKTITALSGDISNDGFTFKESDNMTINDCQLACQKNCSCIAFASPNENNKTGCQIWSEGTNFTDAVFANPVFTYRLIYIR**************
MVSANQRFRLGFFNPPSTTTHYLAISYVKPHELGDDETDKLVWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDYPTDTFLPGMKLGINLEADKKWFLQSWITEESPAQGSFTLGVDPNFTNHLSIWWRGEFHSNIGLWRNGIFDSSGDSTISDFIFSYTSNKQEKYFTYSVKGNVTLFPRLRIMADGILATHNGKERLIEGYPVCRNASSDFKTITALSGDISNDGFTFKESDNMTINDCQLACQKNCSCIAFASPNENNKTGCQIWSEGTNFTDAVFANPVFTYRLIYIRETTA**********
**SANQRFRLGFFNPPSTTTHYLAISYVKPHELGDDETDKLVWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDYPTDTFLPGMKLGINLEADKKWFLQSWITEESPAQGSFTLGVDPNFTNHLSIWWRGEFHSNIGLWRNGIFDSSGDSTISDFIFSYTSNKQEKYFTYSVKGNVTLFPRLRIMADGILATHNGKERLIEGYPVCRNASSDFKTITALSGDISNDGFTFKESDNMTINDCQLACQKNCSCIAFASPNENNKTGCQIWSEGTNFTDAVFANPVFTYRLIYIRETTAAGDS******
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MVSANQRFRLGFFNPPSTTTHYLAISYVKPHELGDDETDKLVWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDYPTDTFLPGMKLGINLEADKKWFLQSWITEESPAQGSFTLGVDPNFTNHLSIWWRGEFHSNIGLWRNGIFDSSGDSTISDFIFSYTSNKQEKYFTYSVKGNVTLFPRLRIMADGILATHNGKERLIEGYPVCRNASSDFKTITALSGDISNDGFTFKESDNMTINDCQLACQKNCSCIAFASPNENNKTGCQIWSEGTNFTDAVFANPVFTYRLIYIRETTAAGDSGERRRV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query351 2.2.26 [Sep-21-2011]
O64793 818 G-type lectin S-receptor- no no 0.925 0.397 0.414 2e-57
Q9LW83 850 G-type lectin S-receptor- no no 0.917 0.378 0.384 2e-54
O81906 849 G-type lectin S-receptor- no no 0.612 0.253 0.345 3e-29
Q9SY89 842 Putative G-type lectin S- no no 0.635 0.264 0.325 8e-28
Q39086 843 Receptor-like serine/thre no no 0.849 0.353 0.295 3e-27
O81905 850 Receptor-like serine/thre no no 0.849 0.350 0.283 2e-25
P17840435 S-locus-specific glycopro N/A no 0.840 0.678 0.284 3e-25
O81832 783 G-type lectin S-receptor- no no 0.857 0.384 0.273 3e-24
P07761436 S-locus-specific glycopro N/A no 0.846 0.681 0.261 1e-23
O81833 815 G-type lectin S-receptor- no no 0.829 0.357 0.262 2e-23
>sp|O64793|Y1675_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 OS=Arabidopsis thaliana GN=At1g67520 PE=2 SV=3 Back     alignment and function desciption
 Score =  223 bits (567), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 145/350 (41%), Positives = 190/350 (54%), Gaps = 25/350 (7%)

Query: 1   MVSANQRFRLGFFNPPSTTTHYLAISYVKPHELGDDETDKLVWIANRNTPIFDTSGSLTI 60
           +VSA + F+L FFN  ++   YL I +   + L  D  D+ VWIANRN PI D SGSLT+
Sbjct: 39  LVSAFKIFKLKFFNFKNSENLYLGIWFNNLY-LNTDSQDRPVWIANRNNPISDRSGSLTV 97

Query: 61  DSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDY 120
           DS  G LKIL      + +SSI    N T+ +L DSGNL LQE + DGS +RVLWQSFDY
Sbjct: 98  DSL-GRLKILRGASTMLELSSIETTRNTTLQLL-DSGNLQLQEMDADGSMKRVLWQSFDY 155

Query: 121 PTDTFLPGMKLGINLEADKKWFLQSWITEESPAQGSFTLGVDPNFTNHLSIWWRGEFHSN 180
           PTDT LPGMKLG + +  K+W L SW+ +  PA GSF  G+D N TN L+I WRG  + +
Sbjct: 156 PTDTLLPGMKLGFDGKTRKRWELTSWLGDTLPASGSFVFGMDTNITNVLTILWRGNMYWS 215

Query: 181 IGLWRNGIFDSSGDSTISDFIFSYTSNKQEKYFTYSVKGN--VTLFPRLRIMADGILATH 238
            GLW  G F S  +     F+FS+ S K  +YF YS   +   T FP + I   GIL   
Sbjct: 216 SGLWNKGRF-SEEELNECGFLFSFVSTKSGQYFMYSGDQDDARTFFPTIMIDEQGILRRE 274

Query: 239 NGKER-----------LIEGYPVCRNASSDFKTITALSGDISNDGFTFKESDNMTINDCQ 287
               +           L  GY V R+    F +        +++GF    S   +  DC 
Sbjct: 275 QMHRQRNRQNYRNRNCLAAGY-VVRDEPYGFTSFRVTVSSSASNGFVL--SGTFSSVDCS 331

Query: 288 LACQKNCSCIAFASPNENNKTGCQIWSEGTNFTDAVFANPVFTYRLIYIR 337
             C +N SC+A+AS  E + TGC+IW+       +   +P    R IYIR
Sbjct: 332 AICLQNSSCLAYAS-TEPDGTGCEIWNTYPTNKGSASHSP----RTIYIR 376

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1
>sp|Q9LW83|CE101_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase CES101 OS=Arabidopsis thaliana GN=CES101 PE=2 SV=2 Back     alignment and function description
>sp|O81906|B120_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana GN=B120 PE=1 SV=1 Back     alignment and function description
>sp|Q9SY89|Y1661_ARATH Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 OS=Arabidopsis thaliana GN=At1g61610 PE=2 SV=1 Back     alignment and function description
>sp|Q39086|SD17_ARATH Receptor-like serine/threonine-protein kinase SD1-7 OS=Arabidopsis thaliana GN=SD17 PE=1 SV=1 Back     alignment and function description
>sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1 Back     alignment and function description
>sp|P17840|SLSG3_BRAOL S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2 Back     alignment and function description
>sp|O81832|Y4729_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=3 SV=4 Back     alignment and function description
>sp|P07761|SLSG6_BRAOL S-locus-specific glycoprotein S6 OS=Brassica oleracea GN=SLSG PE=2 SV=2 Back     alignment and function description
>sp|O81833|SD11_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 OS=Arabidopsis thaliana GN=SD11 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query351
255550026 795 Serine/threonine-protein kinase PBS1, pu 0.883 0.389 0.425 6e-63
255550034 789 receptor protein kinase, putative [Ricin 0.925 0.411 0.411 3e-60
12324679 833 putative receptor protein kinase [Arabid 0.951 0.400 0.406 1e-55
297830182 767 CES101 [Arabidopsis lyrata subsp. lyrata 0.868 0.397 0.436 1e-55
42563025 587 lectin protein kinase-like protein [Arab 0.925 0.553 0.414 1e-55
322510097 818 RecName: Full=G-type lectin S-receptor-l 0.925 0.397 0.414 1e-55
359482600 789 PREDICTED: G-type lectin S-receptor-like 0.851 0.378 0.428 1e-53
15233263 850 lectin receptor kinase CES101 [Arabidops 0.917 0.378 0.384 1e-52
397134747 852 S domain subfamily receptor-like kinase 0.937 0.386 0.386 1e-52
9294449 805 receptor kinase 1 [Arabidopsis thaliana] 0.851 0.371 0.393 1e-50
>gi|255550026|ref|XP_002516064.1| Serine/threonine-protein kinase PBS1, putative [Ricinus communis] gi|223544969|gb|EEF46484.1| Serine/threonine-protein kinase PBS1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 145/341 (42%), Positives = 199/341 (58%), Gaps = 31/341 (9%)

Query: 1   MVSANQRFRLGFF---NPPSTTTHYLAISYVKPHELGDDETDKLVWIANRNTPIFDTSGS 57
           +VSA+  F+L F        ++  YL I Y         E    VW+ANR+TPIF  SG 
Sbjct: 43  LVSADGMFKLKFGTVGESGESSDSYLGIWY------NYIEEKFPVWVANRDTPIFGNSGI 96

Query: 58  LTIDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDSGNLVLQEANHDGSTRRVLWQS 117
           LT+DS  GNLKIL + G  I + S+  A  N IA L+D+GN +L+E N +GS ++VLWQS
Sbjct: 97  LTVDSQ-GNLKILRDKGRSIVLYSVQKAIYNAIATLEDTGNFILRELNSNGSIKQVLWQS 155

Query: 118 FDYPTDTFLPGMKLGINLEADKKWFLQSWITEESPAQGSFTLGVDPNFTNHLSIWWRGEF 177
           FDYPTDTFLPGMKLGINL+  ++W + SW + ESPA+G+F LG DP+  N L IW +G  
Sbjct: 156 FDYPTDTFLPGMKLGINLKTGQQWSVISWRSFESPARGTFVLGTDPDSKNQLVIWRQGHI 215

Query: 178 HSNIGLWRNGIFDSSGDSTISDFIFSYTSNKQEKYFTYSVKGNVTLFPRLRIMADGILA- 236
           +   G W        G S    + FSY S++ E YF YS+    ++FPRL I A+G+L  
Sbjct: 216 YWASGSWVGQFSLLGGLSFNVLYNFSYFSDENESYFIYSINKANSIFPRLTINAEGVLIG 275

Query: 237 ----THNGKERLIEGY--------------PVCRNASSDFKTITALSGDISNDGFTFKES 278
                ++ + + I  Y              P CR+ S  F      +G + +DGF + +S
Sbjct: 276 FLKYDYHEEVKCITSYDYMSPTVGCLEQNLPNCRSPSDAF-LFKPRTGYMYSDGFKYSDS 334

Query: 279 DNMTINDCQLACQKNCSCIAFASPNENNKTGCQIWSEGTNF 319
           +N+T+ DC+L C KNCSCIA+AS NE+  TGC+IW    +F
Sbjct: 335 ENLTMIDCKLNCLKNCSCIAYASKNEDG-TGCEIWRSARSF 374

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550034|ref|XP_002516068.1| receptor protein kinase, putative [Ricinus communis] gi|223544973|gb|EEF46488.1| receptor protein kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|12324679|gb|AAG52302.1|AC011020_9 putative receptor protein kinase [Arabidopsis thaliana] gi|3176659|gb|AAC18783.1| Strong similarity to receptor kinase gb|M80238 from A. thaliana [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297830182|ref|XP_002882973.1| CES101 [Arabidopsis lyrata subsp. lyrata] gi|297328813|gb|EFH59232.1| CES101 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42563025|ref|NP_176919.2| lectin protein kinase-like protein [Arabidopsis thaliana] gi|332196537|gb|AEE34658.1| lectin protein kinase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|322510097|sp|O64793.3|Y1675_ARATH RecName: Full=G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520; Flags: Precursor Back     alignment and taxonomy information
>gi|359482600|ref|XP_003632790.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|15233263|ref|NP_188224.1| lectin receptor kinase CES101 [Arabidopsis thaliana] gi|313118276|sp|Q9LW83.2|CE101_ARATH RecName: Full=G-type lectin S-receptor-like serine/threonine-protein kinase CES101; AltName: Full=Protein CALLUS EXPRESSION OF RBCS 101; Flags: Precursor gi|332642243|gb|AEE75764.1| lectin receptor kinase CES101 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|397134747|gb|AFO11038.1| S domain subfamily receptor-like kinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9294449|dbj|BAB02668.1| receptor kinase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query351
TAIR|locus:2093397 850 CES101 "CALLUS EXPRESSION OF R 0.655 0.270 0.473 4.9e-58
TAIR|locus:2146263413 AT5G18470 [Arabidopsis thalian 0.621 0.527 0.403 8.7e-49
TAIR|locus:2200908 842 AT1G61610 [Arabidopsis thalian 0.632 0.263 0.331 5.8e-32
TAIR|locus:2018546 843 RK1 "receptor kinase 1" [Arabi 0.623 0.259 0.35 1.8e-31
TAIR|locus:2131684 783 AT4G27290 [Arabidopsis thalian 0.660 0.296 0.306 7.8e-31
TAIR|locus:2141181 850 RK3 "receptor kinase 3" [Arabi 0.632 0.261 0.331 1.7e-30
TAIR|locus:2141176 849 B120 [Arabidopsis thaliana (ta 0.629 0.260 0.345 2.3e-30
TAIR|locus:2018506 847 RK2 "receptor kinase 2" [Arabi 0.792 0.328 0.294 8.2e-30
TAIR|locus:2059103 828 AT2G19130 [Arabidopsis thalian 0.603 0.256 0.354 8.5e-30
TAIR|locus:2131694 815 AT4G27300 [Arabidopsis thalian 0.626 0.269 0.333 1.5e-29
TAIR|locus:2093397 CES101 "CALLUS EXPRESSION OF RBCS 101" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 505 (182.8 bits), Expect = 4.9e-58, Sum P(2) = 4.9e-58
 Identities = 114/241 (47%), Positives = 142/241 (58%)

Query:     1 MVSANQRFRLGFFNPPSTTTHYLAISYVKPHELGDDETDKLVWIANRNTPIFDTSGSLTI 60
             +VSA   F+L FFN  +++  YL I Y   +  G       VWIANRN P+   SGSLT+
Sbjct:    39 LVSAFNIFKLKFFNFENSSNWYLGIWYNNFYLSG------AVWIANRNNPVLGRSGSLTV 92

Query:    61 DSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDY 120
             DS  G L+IL      + +SS    GN T+ +L DSGNL LQE + DGS +R LWQSFDY
Sbjct:    93 DSL-GRLRILRGASSLLELSSTETTGNTTLKLL-DSGNLQLQEMDSDGSMKRTLWQSFDY 150

Query:   121 PTDTFLPGMKLGINLEADKKWFLQSWITEESPAQGSFTLGVDPNFTNHLSIWWRGEFHSN 180
             PTDT LPGMKLG N++  K+W L SW+ +  PA GSF  G+D N TN L+I W G  +  
Sbjct:   151 PTDTLLPGMKLGFNVKTGKRWELTSWLGDTLPASGSFVFGMDDNITNRLTILWLGNVYWA 210

Query:   181 IGLWRNGIFDSSGDSTISDFIFSYTSNKQEKYFTYSVKGNV--TLFPRLRIMADGILATH 238
              GLW  G F     +T + FIFS+ S + E YF YS   N    LFPR+RI   G L   
Sbjct:   211 SGLWFKGGFSLEKLNT-NGFIFSFVSTESEHYFMYSGDENYGGPLFPRIRIDQQGSLQKI 269

Query:   239 N 239
             N
Sbjct:   270 N 270
GO:0004672 "protein kinase activity" evidence=IEA
GO:0004674 "protein serine/threonine kinase activity" evidence=IEA
GO:0004713 "protein tyrosine kinase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0016301 "kinase activity" evidence=ISS
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA;ISS
TAIR|locus:2146263 AT5G18470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200908 AT1G61610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018546 RK1 "receptor kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131684 AT4G27290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141181 RK3 "receptor kinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141176 B120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018506 RK2 "receptor kinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059103 AT2G19130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131694 AT4G27300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034405001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (770 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query351
pfam01453109 pfam01453, B_lectin, D-mannose binding lectin 1e-31
cd00028116 cd00028, B_lectin, Bulb-type mannose-specific lect 7e-21
smart00108114 smart00108, B_lectin, Bulb-type mannose-specific l 2e-18
cd0109884 cd01098, PAN_AP_plant, Plant PAN/APPLE-like domain 1e-07
pfam0827666 pfam08276, PAN_2, PAN-like domain 7e-07
smart0047378 smart00473, PAN_AP, divergent subfamily of APPLE d 3e-05
>gnl|CDD|216511 pfam01453, B_lectin, D-mannose binding lectin Back     alignment and domain information 
 Score =  114 bits (288), Expect = 1e-31
 Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 7/113 (6%)

Query: 41  LVWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDSGNLV 100
           +VW+ANR  P+ D+S +L +  +DGNL +    G  +  S+  G G+  +A+LQD GNLV
Sbjct: 4   VVWVANRLNPLTDSSYTLIL-QSDGNLVLYDGNGRVVWSSNTSGKGSGCVAVLQDDGNLV 62

Query: 101 LQEANHDGSTRRVLWQSFDYPTDTFLPGMKLGINLEADKKWFLQSWITEESPA 153
           L       ++ +VLWQSFD+PTDT LPG K G N+       L SW +   P+
Sbjct: 63  LY-----DNSGKVLWQSFDHPTDTLLPGQKDG-NVVIGGSRRLTSWKSNTDPS 109

These proteins include mannose-specific lectins from plants as well as bacteriocins from bacteria. Length = 109
>gnl|CDD|237995 cd00028, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information
>gnl|CDD|214519 smart00108, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information
>gnl|CDD|238531 cd01098, PAN_AP_plant, Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins Back     alignment and domain information
>gnl|CDD|219774 pfam08276, PAN_2, PAN-like domain Back     alignment and domain information
>gnl|CDD|214680 smart00473, PAN_AP, divergent subfamily of APPLE domains Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 351
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 99.95
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 99.91
smart00108114 B_lectin Bulb-type mannose-specific lectin. 99.89
PF0827666 PAN_2: PAN-like domain; InterPro: IPR013227 PAN do 99.64
cd0109884 PAN_AP_plant Plant PAN/APPLE-like domain; present 99.42
cd0012980 PAN_APPLE PAN/APPLE-like domain; present in N-term 99.36
PF00954110 S_locus_glycop: S-locus glycoprotein family; Inter 99.29
smart0047378 PAN_AP divergent subfamily of APPLE domains. Apple 98.59
smart00108114 B_lectin Bulb-type mannose-specific lectin. 98.41
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 98.27
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 98.01
cd0110073 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like d 97.59
PF0002479 PAN_1: PAN domain This Prosite entry concerns appl 93.42
smart0022379 APPLE APPLE domain. Four-fold repeat in plasma kal 90.09
PF1429551 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A. 87.14
PF0827771 PAN_3: PAN-like domain; InterPro: IPR006583 PAN do 86.51
smart0060594 CW CW domain. 84.87
cd0109980 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; pr 82.44
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information 
Probab=99.95  E-value=8.9e-30  Score=210.57  Aligned_cols=108  Identities=44%  Similarity=0.743  Sum_probs=79.1

Q ss_pred             CcEEEEeCCCCCCcCC--CcEEEEEcCCCcEEEeeCCCCCeeeec-cCCCC--CceEEEEecCCCeEEEecccCCCCcee
Q 039858           39 DKLVWIANRNTPIFDT--SGSLTIDSNDGNLKILHNGGDPIAVSS-IPGAG--NNTIAILQDSGNLVLQEANHDGSTRRV  113 (351)
Q Consensus        39 ~~~vW~Anr~~pv~~~--~~~l~l~~~~G~L~l~~~~g~~~vWst-~~~~~--~~~~a~LldsGNlVl~~~~~~~~~~~~  113 (351)
                      ++|||+|||+.|+...  ..+|+|+. ||+|+|++..+ ..+|++ .+.+.  ....|+|+|+|||||++.    .+. +
T Consensus         2 ~tvvW~an~~~p~~~~s~~~~L~l~~-dGnLvl~~~~~-~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~----~~~-~   74 (114)
T PF01453_consen    2 RTVVWVANRNSPLTSSSGNYTLILQS-DGNLVLYDSNG-SVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDS----SGN-V   74 (114)
T ss_dssp             --------TTEEEEECETTEEEEEET-TSEEEEEETTT-EEEEE--S-TTSS-SSEEEEEETTSEEEEEET----TSE-E
T ss_pred             cccccccccccccccccccccceECC-CCeEEEEcCCC-CEEEEecccCCccccCeEEEEeCCCCEEEEee----cce-E
Confidence            6899999999999542  37899999 99999999998 889999 65443  478999999999999995    456 9


Q ss_pred             eeeecCCCCcccCCCceEeeeecCCCceEEEEeccCCCCC
Q 039858          114 LWQSFDYPTDTFLPGMKLGINLEADKKWFLQSWITEESPA  153 (351)
Q Consensus       114 lWqSFd~PtDTlLpgq~l~~~~~tg~~~~L~Sw~s~~d~s  153 (351)
                      |||||||||||+||+|+|+.+..+|.+..|+||++.+|||
T Consensus        75 lW~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps  114 (114)
T PF01453_consen   75 LWQSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS  114 (114)
T ss_dssp             EEESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred             EEeecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence            9999999999999999999877776666799999999996

Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins Back     alignment and domain information
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins Back     alignment and domain information
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation Back     alignment and domain information
>smart00473 PAN_AP divergent subfamily of APPLE domains Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins Back     alignment and domain information
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>smart00223 APPLE APPLE domain Back     alignment and domain information
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A Back     alignment and domain information
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>smart00605 CW CW domain Back     alignment and domain information
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query351
1kj1_A109 Lectin I, lecgna 1; BULB lectin, mannose, plant pr 2e-06
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 2e-05
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 4e-05
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 7e-05
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 4e-05
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 1e-04
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 2e-04
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 1e-04
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 9e-04
>1kj1_A Lectin I, lecgna 1; BULB lectin, mannose, plant protein; HET: MAN; 2.20A {Allium sativum} SCOP: b.78.1.1 PDB: 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Length = 109 Back     alignment and structure
 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 37  ETDKLVWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDS 96
           +    VW +N         G   +  +DGN  +    G  +  S       N + +LQ+ 
Sbjct: 35  DHSTSVWASNTGIL--GKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQED 92

Query: 97  GNLVLQEANHDGSTRRVLWQSFDY 120
           GN+V+            +W +  Y
Sbjct: 93  GNVVIY--------GSDIWSTGTY 108
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Length = 112 Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Length = 119 Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Length = 119 Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Length = 115 Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Length = 110 Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Length = 110 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Length = 109 Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query351
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 100.0
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 100.0
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 99.69
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.67
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.67
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.65
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.62
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.61
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.58
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.58
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.55
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 99.51
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 99.34
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 99.32
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 99.31
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 99.26
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 99.24
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 99.15
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 99.14
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 99.07
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 99.07
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 98.94
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 98.91
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 98.66
2ll3_A82 Micronemal protein 4; cell adhesion; NMR {Toxoplas 91.38
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
Probab=100.00  E-value=3.8e-38  Score=297.07  Aligned_cols=196  Identities=21%  Similarity=0.224  Sum_probs=149.5

Q ss_pred             CccCCCeeEEEeecCCCCCceEEEEEEecCCCCCCCCCCcEEEEeCCCCCCcCC----CcEEEEEcCCCcEEE--eeCCC
Q 039858            1 MVSANQRFRLGFFNPPSTTTHYLAISYVKPHELGDDETDKLVWIANRNTPIFDT----SGSLTIDSNDGNLKI--LHNGG   74 (351)
Q Consensus         1 l~S~~g~F~lGF~~~~~~~~~~lgIw~~~~~~~~~~~~~~~vW~Anr~~pv~~~----~~~l~l~~~~G~L~l--~~~~g   74 (351)
                      |+|++|.|+||||.++   ++||   |+        +.+ +||+|||+.||.+.    +++|+|+. +|+|+|  .|+.+
T Consensus        29 l~S~~g~F~lgf~~~~---~~~l---y~--------~~~-vvW~Anr~~p~~~~~~~~~~~l~l~~-~G~Lvl~~~~~~~   92 (276)
T 3m7h_A           29 LLSPNQRFKLLLQGDG---NLVI---QD--------NGA-TVWVANEQQPFSSTIPLRNKKAPLAF-YVQYGAFLDDYSR   92 (276)
T ss_dssp             EECTTSSEEEEECTTS---CEEE---EE--------TTE-EEEECSTTSTTEEEEECCCTTCCSEE-EESSSEEEEEGGG
T ss_pred             EEcCCCcEEEEEECCC---CeEE---EC--------CCC-eEEECCCCCCcCCcccccceEEEEeC-CCcEEEEEeCCCC
Confidence            6899999999999432   4676   64        456 99999999999864    67899999 999999  78778


Q ss_pred             CCeeeeccCCC------CCceEEEEecCCCeEEEecccCCCCceeeeeecCCCCcccCCCceEeeeecCCCceEEEEecc
Q 039858           75 DPIAVSSIPGA------GNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDYPTDTFLPGMKLGINLEADKKWFLQSWIT  148 (351)
Q Consensus        75 ~~~vWst~~~~------~~~~~a~LldsGNlVl~~~~~~~~~~~~lWqSFd~PtDTlLpgq~l~~~~~tg~~~~L~Sw~s  148 (351)
                       .+||++.+..      ..+..|+|+|+|||||++      +. +||||  ||||||||||+|+.++++|  +.|   ++
T Consensus        93 -~~vWst~~~~~~~~~~~~~~~a~L~d~GNlVl~~------~~-~lWqS--~ptdtlLpg~~~~~~l~~g--~~L---~S  157 (276)
T 3m7h_A           93 -RRVWLTDNSTFTSNDQWNRTHLVLQDDGNIVLVD------SL-ALWNG--TPAIPLVPGAIDSLLLAPG--SEL---VQ  157 (276)
T ss_dssp             -TEEEEECCCCCCCTTHHHHEEEEECTTSCEEEEE------EE-EEEES--CTTSCCCCSCTTCEEECSS--EEE---CT
T ss_pred             -CEEEEeCCCcccccccCCceEEEEeCCCCEEecC------Cc-eeeCc--ccccccccccccccccccC--ccc---cc
Confidence             8999995432      346789999999999997      24 89999  9999999999999999888  456   57


Q ss_pred             CCCCCCceeEEeecCCCceeEEEecC-CeeEEEecccCCCeeeecCCC-CccccEEEEEecCC-eeEEEEEecCCCCeee
Q 039858          149 EESPAQGSFTLGVDPNFTNHLSIWWR-GEFHSNIGLWRNGIFDSSGDS-TISDFIFSYTSNKQ-EKYFTYSVKGNVTLFP  225 (351)
Q Consensus       149 ~~d~s~G~f~l~~~~~~~~~l~~~~~-~~~yW~~g~w~~~~~~~~p~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  225 (351)
                      .+||++|.|+|+|+++++  +++|+. ..+||++|+|+....    .+ ......+.+.++++ .++.++  ... ...+
T Consensus       158 ~~dps~G~fsl~l~~dGn--lvLy~~~~~~yW~Sgt~~~~~~----~l~l~~dGnLvl~d~~~~~vWsS~--t~~-~~~~  228 (276)
T 3m7h_A          158 GVVYGAGASKLVFQGDGN--LVAYGPNGAATWNAGTQGKGAV----RAVFQGDGNLVVYGAGNAVLWHSH--TGG-HASA  228 (276)
T ss_dssp             TCEEEETTEEEEECTTSC--EEEECTTSSEEEECCCTTTTCC----EEEECTTSCEEEECTTSCEEEECS--CTT-CTTC
T ss_pred             CCCCCCceEEEeecCCce--EEEEeCCCeEEEECCCCCCccE----EEEEcCCCeEEEEeCCCcEEEEec--CCC-CCCE
Confidence            899999999999999985  555654 589999999875321    11 11122334444433 333222  222 2347


Q ss_pred             EEEEccCccEE
Q 039858          226 RLRIMADGILA  236 (351)
Q Consensus       226 rl~Ld~dG~l~  236 (351)
                      |++|+.||+|+
T Consensus       229 rl~Ld~dGnLv  239 (276)
T 3m7h_A          229 VLRLQANGSIA  239 (276)
T ss_dssp             EEEECTTSCEE
T ss_pred             EEEEcCCccEE
Confidence            99999999997
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 351
d1kj1a_109 b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium 2e-11
d1dlpa2120 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet 1e-09
d1dlpa2120 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet 0.002
d1jpca_108 b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galan 5e-07
d1dlpa1115 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet p 1e-06
d1b2pa_119 b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scill 3e-06
d1xd5a_112 b.78.1.1 (A:) Gastrodianin (antifungal protein) {G 2e-05
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109 Back     information, alignment and structure

class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 58.0 bits (140), Expect = 2e-11
 Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 25/116 (21%)

Query: 5   NQRFRLGFFNPPSTTTHYLAISYVKPHELGDDETDKLVWIANRNTPIFDTSGSLTIDSND 64
            + +              L +                VW +N             + S D
Sbjct: 18  VEPYHFIMQEDC-----NLVLYD----------HSTSVWASNTGILGKKGCK-AVLQS-D 60

Query: 65  GNLKILHNGGDPIAVSSIPGAGNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDY 120
           GN  +    G  +  S       N + +LQ+ GN+V+            +W +  Y
Sbjct: 61  GNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIYG--------SDIWSTGTY 108
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120 Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120 Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Length = 108 Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 115 Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 119 Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Length = 112 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query351
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 99.67
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 99.67
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 99.66
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 99.65
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 99.62
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 99.41
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 99.09
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 99.03
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 98.93
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 98.88
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 98.82
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 98.77
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.67  E-value=1.8e-16  Score=126.92  Aligned_cols=91  Identities=21%  Similarity=0.334  Sum_probs=73.3

Q ss_pred             CCCeeEEEeecCCCCCceEEEEEEecCCCCCCCCCCcEEEEeCCCCCCcCCCcEEEEEcCCCcEEEeeCCCCCeeeeccC
Q 039858            4 ANQRFRLGFFNPPSTTTHYLAISYVKPHELGDDETDKLVWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIP   83 (351)
Q Consensus         4 ~~g~F~lGF~~~~~~~~~~lgIw~~~~~~~~~~~~~~~vW~Anr~~pv~~~~~~l~l~~~~G~L~l~~~~g~~~vWst~~   83 (351)
                      .+|.|+|+|+..++     | +.|.         ..++||+||++.|+. ..+.|.|+. ||+|+|.|++| .+||++.+
T Consensus        17 ~~g~~~l~~q~dgn-----L-vl~~---------~~~~vW~ant~~~~~-~~~~l~l~~-dGnLvl~~~~g-~~vW~s~t   78 (109)
T d1kj1a_          17 DVEPYHFIMQEDCN-----L-VLYD---------HSTSVWASNTGILGK-KGCKAVLQS-DGNFVVYDAEG-RSLWASHS   78 (109)
T ss_dssp             EETTEEEEECTTSC-----E-EEEE---------TTEEEEECCCCCTTC-CCCEEEECT-TSCEEEECSSS-CEEEECCC
T ss_pred             EeCCEEEEecCCCe-----E-EEEe---------CCEEEEEeCCCCCCc-eeEEEEEcC-CceEEEEeCCC-cEEEEEee
Confidence            36889999987654     2 2344         257899999999876 356899999 99999999999 99999955


Q ss_pred             C-CCCceEEEEecCCCeEEEecccCCCCceeeeeecCC
Q 039858           84 G-AGNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDY  120 (351)
Q Consensus        84 ~-~~~~~~a~LldsGNlVl~~~~~~~~~~~~lWqSFd~  120 (351)
                      . ......|+|+|+|||||++.        .+|||+.|
T Consensus        79 ~~~~~~~~l~L~ddGNlvly~~--------~~W~S~t~  108 (109)
T d1kj1a_          79 VRGNGNYVLVLQEDGNVVIYGS--------DIWSTGTY  108 (109)
T ss_dssp             CCCSSCCEEEECTTSCEEEECC--------EEEECCCC
T ss_pred             ECCCCCEEEEEeCCCcEEEECC--------CEecCCCc
Confidence            3 44567899999999999973        79999865
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure