Citrus Sinensis ID: 039868

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
MATLGWSRSYPGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINAHGKCDDSVPSVGCLK
cccccccccccccccEEEEccccccccccccHHHHHHHHHHHHcccccccEEEEccccEEEEEEEEEEcccccccEEEEEEEEEEccccccccccccccccEEEEEEccEEEEccEEEEccccEEEEEEEccEEEEEEEEEcccccccccEEEccccccEEEEEcEEEccccEEEEccccEEEEEEEEEEccccccEEEEcccccccccEEEEEEEEEEEEccccEEEEEEEccccEEEEEEEEEEEEEEcccccEEEEEEEccccccccccccEEEEcEEEEEEEEEEcccccEEEEccccccEEcEEEEEEEEEEccccccccEEEEcEEEEEccccccccccc
cccHEEccccccccEEEEHHcccccccccccHHHHHHHHHHHHcccccccEEEEccccEEEEEEEEEEcccccccEEEEEEEEEEccccHHHcccccccEEEEEEEEcEEEEEEcEEEccccccHcccccEEEEEEEEEEEccccccccccEEEEccEEEEEEccEEEcccccEEEcccccEEEEEEEEEcccccEEEEEEccccccccEEEEEEEEEEEEcccccEEEEEcccccEEEEEEEEEEEEEEcccccEEEEccccccccccccccEEEEEEEEEEEEEcccccccEEEEEcccccccccEEEEEEEEEEccccccccccHccccccccccccccHHcc
matlgwsrsypgampynvmnfgavgngvtdDSQAFIKAWNAvcgdtsnnptlqvpqgktfllqptsfqgpckssnlqvqiegnliapegpsswkgkdrrsWLYFVNVngftvngngeidgqgSQWWKlcsddatlsnlhisapesspntdgidisasqnihilnsniatgddciaintgssqinvtgltcgpghgisigslgkqgeAAAVEEVHVKNCTLNATQnglriktwqggsgyarkitfnditltdvdnpiiidqfycpheqcsnetnavkisdvsytgihgtsitqdaialncsrtvgcdniVLEHIHiassnskegtystcinahgkcddsvpsvgclk
MATLGWSRSYPGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGnliapegpsswkgKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCtlnatqnglriktwqggsgyARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINahgkcddsvpsvgclk
MATLGWSRSYPGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGPSSWKGKDRRSWLYfvnvngftvngngEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINAHGKCDDSVPSVGCLK
*****W*RSYPGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPT*F********LQVQIEGNLI*******WKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLH**************ISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINAHGKC***********
********SYPGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINAHGKCDDSVPSVGCLK
MATLGWSRSYPGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINAHGKCDDSVPSVGCLK
*ATLGWSRSYPGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINAHGKCDDSVPSVGCL*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATLGWSRSYPGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINAHGKCDDSVPSVGCLK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query346 2.2.26 [Sep-21-2011]
Q9LW07456 Probable polygalacturonas yes no 0.985 0.747 0.462 8e-87
Q94AJ5444 Probable polygalacturonas no no 0.945 0.736 0.407 4e-74
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.910 0.612 0.405 7e-69
P43212514 Polygalacturonase OS=Cryp N/A no 0.887 0.597 0.406 1e-68
Q9FY19507 Polygalacturonase OS=Juni N/A no 0.895 0.611 0.4 4e-68
O23147431 Polygalacturonase ADPG1 O no no 0.901 0.723 0.416 4e-68
Q02096462 Polygalacturonase OS=Pers N/A no 0.881 0.660 0.412 5e-68
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.919 0.724 0.399 2e-66
P48978460 Polygalacturonase OS=Malu N/A no 0.887 0.667 0.431 6e-66
Q949Z1475 Polygalacturonase At1g481 no no 0.945 0.688 0.363 1e-65
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function desciption
 Score =  320 bits (821), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 177/383 (46%), Positives = 235/383 (61%), Gaps = 42/383 (10%)

Query: 3   TLGWSRSYPGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLL 62
           +L + + +  +   +V  FGAVG+GVTDDSQAF+KAW AVC  T +   + VP G TF+L
Sbjct: 11  SLFFLQIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFV-VPAGMTFML 69

Query: 63  QPTSFQGPCKSSNLQVQIEGNLIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQG 122
           QP  FQG CKS+ + VQ+ G L+AP    +WKG D+  W+ F ++ G  + G+GEI+GQG
Sbjct: 70  QPLKFQGSCKSTPVFVQMLGKLVAPS-KGNWKG-DKDQWILFTDIEGLVIEGDGEINGQG 127

Query: 123 SQWWK---------------------LCSDDATLSNLHIS-------------APESSPN 148
           S WW+                     L   D+ ++++HIS             APESSPN
Sbjct: 128 SSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPN 187

Query: 149 TDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAA 208
           TDGID+ AS N+ I +  IATGDDCIAIN+G+S I+++G+ CGPGHGISIGSLGK GE A
Sbjct: 188 TDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETA 247

Query: 209 AVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQ- 267
            VE V V+NC    T NG RIKTWQGGSGYAR ITFN ITL +V+NPIIIDQFY   +  
Sbjct: 248 TVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSD 307

Query: 268 --CSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCDNIVLEHIHI--ASSNSKEG 323
                +++AV++S V ++   GTS ++  +   CS  V C  I L  + I  ASS S + 
Sbjct: 308 NAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQV 367

Query: 324 TYSTCINAHGKCDDSVPSVGCLK 346
               C+N  G    +VP + CL+
Sbjct: 368 AQGQCLNVRGASTIAVPGLECLE 390

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query346
297743440404 unnamed protein product [Vitis vinifera] 0.994 0.851 0.496 1e-100
356547430422 PREDICTED: probable polygalacturonase At 0.953 0.781 0.504 1e-100
359482694366 PREDICTED: probable polygalacturonase At 0.942 0.890 0.509 4e-99
356555461401 PREDICTED: probable polygalacturonase At 0.959 0.827 0.490 3e-98
357487387400 Polygalacturonase [Medicago truncatula] 0.947 0.82 0.527 2e-97
297743439 495 unnamed protein product [Vitis vinifera] 0.947 0.662 0.489 4e-97
359482692389 PREDICTED: probable polygalacturonase At 0.947 0.843 0.489 9e-97
225443001391 PREDICTED: probable polygalacturonase At 0.950 0.841 0.482 7e-95
147765591435 hypothetical protein VITISV_039094 [Viti 0.947 0.754 0.477 8e-95
449484419415 PREDICTED: probable polygalacturonase At 0.947 0.790 0.497 1e-93
>gi|297743440|emb|CBI36307.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/393 (49%), Positives = 253/393 (64%), Gaps = 49/393 (12%)

Query: 1   MATLGWSRSYPGAM----PYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQ 56
           MA +G  RS   ++      NVMN+GAVGNG TDDSQAF++AW  +C   S  P L +P 
Sbjct: 13  MAAMGTCRSVDFSLLQGGQTNVMNYGAVGNGATDDSQAFMRAWRDICAGKS-YPNLVIPG 71

Query: 57  GKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNG 116
           GKTFLL+P  F GPCK S + V++ G ++AP+    +   +   W+ F +VNG TV GNG
Sbjct: 72  GKTFLLRPVQFYGPCKPSKIYVEVYGRIVAPK-LYDYGSNNLNCWIGFWHVNGLTVKGNG 130

Query: 117 EIDGQGSQWWK-----LC--------------------------------------SDDA 133
           +I+G+G++WW+      C                                      S+  
Sbjct: 131 QINGRGAEWWQAYTSTYCKLNASTPSIAMGFYSCNNLLLQGLNFINSQRNHISVSGSNGV 190

Query: 134 TLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPG 193
           T+S+L I+AP+SSPNTDGIDIS S+N+ + +S I TGDDCIA    +SQ+ V G+ CGPG
Sbjct: 191 TISHLTITAPDSSPNTDGIDISHSKNVRVSDSTIGTGDDCIAFGDQTSQVFVKGVACGPG 250

Query: 194 HGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVD 253
           HGISIGSLG  G +A VEE+HV +C+   TQNG RIKTWQGGSGYARKITFN+I L D +
Sbjct: 251 HGISIGSLGVGGASAQVEEIHVDSCSFKGTQNGARIKTWQGGSGYARKITFNNIKLEDAE 310

Query: 254 NPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCDNIVLEHI 313
           NPIIIDQ+YCPH  C   T+AV+ISDVS+TG  GTS T +AI L+CS TVGC NI L++I
Sbjct: 311 NPIIIDQYYCPHSVCQTTTSAVQISDVSFTGFLGTSATDNAIKLSCSETVGCTNISLDYI 370

Query: 314 HIASSNSKEGTYSTCINAHGKCDDSVPSVGCLK 346
           +I  ++    TYS+CINAHG   ++ PS+ CLK
Sbjct: 371 NIKLASGNGNTYSSCINAHGTAHNTFPSLLCLK 403

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356547430|ref|XP_003542115.1| PREDICTED: probable polygalacturonase At3g15720-like [Glycine max] Back     alignment and taxonomy information
>gi|359482694|ref|XP_002266543.2| PREDICTED: probable polygalacturonase At3g15720-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356555461|ref|XP_003546050.1| PREDICTED: probable polygalacturonase At3g15720-like [Glycine max] Back     alignment and taxonomy information
>gi|357487387|ref|XP_003613981.1| Polygalacturonase [Medicago truncatula] gi|355515316|gb|AES96939.1| Polygalacturonase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297743439|emb|CBI36306.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359482692|ref|XP_002266797.2| PREDICTED: probable polygalacturonase At3g15720-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225443001|ref|XP_002266960.1| PREDICTED: probable polygalacturonase At3g15720 [Vitis vinifera] gi|297743436|emb|CBI36303.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147765591|emb|CAN62658.1| hypothetical protein VITISV_039094 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449484419|ref|XP_004156878.1| PREDICTED: probable polygalacturonase At3g15720-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query346
TAIR|locus:2196055491 AT1G02460 [Arabidopsis thalian 0.609 0.429 0.457 2e-73
TAIR|locus:2026795468 AT1G70500 [Arabidopsis thalian 0.618 0.457 0.449 5.3e-73
TAIR|locus:2141345468 AT4G01890 [Arabidopsis thalian 0.612 0.452 0.446 1.8e-70
TAIR|locus:2103478431 ADPG1 [Arabidopsis thaliana (t 0.575 0.461 0.492 2e-67
TAIR|locus:504955462 486 AT4G32375 [Arabidopsis thalian 0.575 0.409 0.519 1.1e-66
TAIR|locus:2054396433 PGAZAT "polygalacturonase absc 0.569 0.454 0.480 1.4e-64
TAIR|locus:2019963532 AT1G10640 [Arabidopsis thalian 0.650 0.422 0.398 7.8e-62
TAIR|locus:2031963394 AT1G05660 [Arabidopsis thalian 0.621 0.545 0.429 2e-61
TAIR|locus:2036581540 AT1G60590 [Arabidopsis thalian 0.604 0.387 0.410 3.3e-61
TAIR|locus:2127821342 AT4G32370 [Arabidopsis thalian 0.384 0.388 0.608 9.9e-60
TAIR|locus:2196055 AT1G02460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 499 (180.7 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
 Identities = 98/214 (45%), Positives = 136/214 (63%)

Query:   135 LSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPG- 193
             + +LHI+AP  SPNTDGI I  S ++ I NS I+ GDDC++I +GS  +++  LTCGPG 
Sbjct:   259 VESLHITAPPLSPNTDGIHIENSNSVTIYNSIISNGDDCVSIGSGSYDVDIRNLTCGPGG 318

Query:   194 HGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVD 253
             HGISIGSLG     A V  + V++  +  + NG+RIKTWQGGSG    +TFN+I +  V 
Sbjct:   319 HGISIGSLGNHNSRACVSNITVRDSVIKYSDNGVRIKTWQGGSGSVSGVTFNNIHVDSVR 378

Query:   254 NPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGT-SITQDAIALNCSRTVGCDNIVLEH 312
             NPIIIDQ+YC  + C+N+T+AV +SD++Y GI GT  I    +   CS  V C N+ L  
Sbjct:   379 NPIIIDQYYCMTKDCANKTSAVFVSDIAYQGIKGTYDIRSPPMHFGCSDAVPCTNLTLSD 438

Query:   313 IHIASSNSKEGTYSTCINAHGKCDD-SVPSVGCL 345
             I +  +  +      C NA+G  ++ S+P V CL
Sbjct:   439 IELLPAKGEIVLDPFCWNAYGIAEELSIPPVWCL 472
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2026795 AT1G70500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141345 AT4G01890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103478 ADPG1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955462 AT4G32375 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054396 PGAZAT "polygalacturonase abscission zone A. thaliana" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019963 AT1G10640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031963 AT1G05660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036581 AT1G60590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127821 AT4G32370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.15LOW CONFIDENCE prediction!
3rd Layer3.2.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00000355001
SubName- Full=Chromosome chr9 scaffold_104, whole genome shotgun sequence; (395 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00028037001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (415 aa)
  •  • •0.905
GSVIVG00036829001
RecName- Full=Pectinesterase; EC=3.1.1.11; (364 aa)
 •   •  0.899
GSVIVG00036367001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (308 aa)
 •   •  0.899
GSVIVG00035359001
RecName- Full=Pectinesterase; EC=3.1.1.11; (299 aa)
 •   •  0.899
GSVIVG00033995001
RecName- Full=Pectinesterase; EC=3.1.1.11; (581 aa)
     •  0.899
GSVIVG00033942001
SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (237 aa)
     •  0.899
GSVIVG00033372001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (332 aa)
     •  0.899
GSVIVG00030705001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (444 aa)
     •  0.899
GSVIVG00029520001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (331 aa)
     •  0.899
GSVIVG00028997001
SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (443 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
PLN03010409 PLN03010, PLN03010, polygalacturonase 1e-113
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 1e-106
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 1e-103
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 4e-87
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 3e-82
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 1e-81
PLN02155394 PLN02155, PLN02155, polygalacturonase 4e-70
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-18
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 2e-04
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information 
 Score =  334 bits (857), Expect = e-113
 Identities = 166/359 (46%), Positives = 222/359 (61%), Gaps = 29/359 (8%)

Query: 16  YNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSN 75
           YNV+ FGA G+G TDDS AF++AWNA CG   N  TL +P GKT+LLQP  F+GPCKS++
Sbjct: 47  YNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTS 106

Query: 76  LQVQIEGNLIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWK---LCSDD 132
           ++VQ++G ++AP    +W     + W+ F  V+G  ++G+G IDG+GS +W+   +   D
Sbjct: 107 IKVQLDGIIVAPSNIVAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCD 166

Query: 133 ------------------------ATLSNLHISAPESSPNTDGIDISASQNIHILNSNIA 168
                                     +S ++I APE+SPNTDGIDIS S NI+I +S I 
Sbjct: 167 NLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQ 226

Query: 169 TGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLR 228
           TGDDCIAIN+GSS IN+T + CGPGHGIS+GSLG  G  A V +VHV +CT N T NG R
Sbjct: 227 TGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGAR 286

Query: 229 IKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQC-SNETNAVKISDVSYTGIHG 287
           IKTWQGG GYAR I+F +ITL +  NPIIIDQ Y    +  + + +AV IS+V Y G  G
Sbjct: 287 IKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRG 346

Query: 288 TSITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINAHGKCDDSVPSVGCLK 346
           T+  ++AI L CS    C ++V++ I +   N  E     C N  G+  D+     C K
Sbjct: 347 TTSNENAITLKCSAITHCKDVVMDDIDVTMENG-EKPKVECQNVEGESSDTDLMRDCFK 404

Length = 409
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 346
PLN02793443 Probable polygalacturonase 100.0
PLN03010409 polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.89
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.87
PLN02218431 polygalacturonase ADPG 99.8
PLN03003456 Probable polygalacturonase At3g15720 99.77
PLN02793443 Probable polygalacturonase 99.77
PLN02155394 polygalacturonase 99.77
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.76
PLN03010409 polygalacturonase 99.75
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.75
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.62
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.56
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.36
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.93
smart00656190 Amb_all Amb_all domain. 98.78
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.64
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.64
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.52
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.42
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.33
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.28
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.27
PLN02773317 pectinesterase 98.26
PLN02480343 Probable pectinesterase 98.24
PLN02304379 probable pectinesterase 98.23
PLN02682369 pectinesterase family protein 98.17
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.13
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.11
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.09
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.99
PLN02634359 probable pectinesterase 97.98
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.97
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.94
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.94
PLN02665366 pectinesterase family protein 97.92
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.89
PLN02432293 putative pectinesterase 97.88
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.86
PLN02301548 pectinesterase/pectinesterase inhibitor 97.86
PLN02671359 pectinesterase 97.86
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.85
PLN02176340 putative pectinesterase 97.84
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.82
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.82
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.81
PLN02916502 pectinesterase family protein 97.81
PRK10531422 acyl-CoA thioesterase; Provisional 97.81
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 97.81
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.76
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.74
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.74
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.73
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.72
PLN02197588 pectinesterase 97.71
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.71
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.71
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.71
PLN02497331 probable pectinesterase 97.66
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 97.65
PLN02314586 pectinesterase 97.63
PF1221867 End_N_terminal: N terminal extension of bacterioph 97.59
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.54
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.45
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.44
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 97.44
smart00656190 Amb_all Amb_all domain. 97.4
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.09
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 96.88
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 96.77
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 96.42
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 92.49
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 92.0
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 91.93
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 91.68
PLN02773317 pectinesterase 90.66
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 88.77
PLN02480343 Probable pectinesterase 88.21
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 87.56
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=2.2e-71  Score=539.71  Aligned_cols=331  Identities=47%  Similarity=0.868  Sum_probs=302.5

Q ss_pred             CCccEEEeeccccCCCCcchHHHHHHHHHHhcCCCCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEeeEEEecCCCC
Q 039868           12 GAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGPS   91 (346)
Q Consensus        12 ~~~~~nV~dfGA~gdg~tddT~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g~l~~~~~~~   91 (346)
                      .++++||+||||+|||++|||+|||+||++||+ +.+|++|+||+|++|++++|.|.++|| ++++|+++|+|+++.+++
T Consensus        49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~-~~ggg~v~vP~G~~fl~~~i~l~gpck-s~vtL~l~g~l~~~~d~~  126 (443)
T PLN02793         49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACS-SKVKTRIVIPAGYTFLVRPIDLGGPCK-AKLTLQISGTIIAPKDPD  126 (443)
T ss_pred             CceEEEhhhcccCCCCCCccHHHHHHHHHHHhc-cCCCCEEEECCCceEEEEEEEECCccC-CCeEEEEEEEEEccCChH
Confidence            346899999999999999999999999976898 778999999999669999999988887 899999999999999999


Q ss_pred             CCCCCCCcccEEEEeeeceEEEeceEEeCCCcccccc------------c------------------------------
Q 039868           92 SWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKL------------C------------------------------  129 (346)
Q Consensus        92 ~~~~~~~~~~i~~~~~~ni~I~G~G~idg~g~~~~~~------------~------------------------------  129 (346)
                      +|+......||.+.+++|++|+|.|+|||+|+.||..            +                              
T Consensus       127 ~w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~  206 (443)
T PLN02793        127 VWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFT  206 (443)
T ss_pred             HccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEE
Confidence            9986555679999999999999999999999999942            0                              


Q ss_pred             -CCceEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceeEEecccCCCCCC
Q 039868          130 -SDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAA  208 (346)
Q Consensus       130 -~~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~  208 (346)
                       .+||+|++++|.+|..++|+||||+.+|+||+|+||+|.++||||++|++++||+|+||+|..+|||+|||++++...+
T Consensus       207 ~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~  286 (443)
T PLN02793        207 NCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWS  286 (443)
T ss_pred             ccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCC
Confidence             0889999999999888899999999999999999999999999999999999999999999999999999998876678


Q ss_pred             CEeEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEeeEEecCCccEEEEeeeCCC-CCCCCCCCceeEEeEEEEeEEE
Q 039868          209 AVEEVHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPH-EQCSNETNAVKISDVSYTGIHG  287 (346)
Q Consensus       209 ~~~ni~v~n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~-~~~~~~~~~~~i~nI~~~ni~~  287 (346)
                      .++||+|+||+|.++.+|++||+|.+++|.|+||+|+||+|+++.+||.|+++|++. ..|....+...|+||+|+||++
T Consensus       287 ~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~G  366 (443)
T PLN02793        287 EVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKG  366 (443)
T ss_pred             cEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEE
Confidence            899999999999999999999999998899999999999999999999999999763 3455556778999999999999


Q ss_pred             EeccCceEEEEccCCCCeecEEEEeEEEEeCCCCCCcceEEeccccccCCcccCCCCC
Q 039868          288 TSITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINAHGKCDDSVPSVGCL  345 (346)
Q Consensus       288 ~~~~~~~~~i~~~~~~~~~ni~~~nv~v~~~~~~~~~~~~c~nv~~~~~~~~~~~~~~  345 (346)
                      +.....++.+.|.++.||+||+|+||+++...++ .....|.|++|...++++||||+
T Consensus       367 t~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~~~~~~~p~~C~  423 (443)
T PLN02793        367 TSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGSSSGQVYPPPCF  423 (443)
T ss_pred             EEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEeECCeEcCCccc
Confidence            9865668999999999999999999999987643 56789999999999988999997

>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 3e-19
1nhc_A336 Structural Insights Into The Processivity Of Endopo 1e-18
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 2e-17
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 7e-16
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 1e-15
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 1e-13
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 2e-08
2uve_A608 Structure Of Yersinia Enterocolitica Family 28 Exop 4e-05
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 8e-05
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 26/204 (12%)
Query: 119 DGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINT 178
           DG G   WK            I  P ++ NTDGID  +S+NI I  SNIATGDD +AI  
Sbjct: 181 DGDGFTAWKTT----------IKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKA 230
Query: 179 GSSQINVTGLTC-----GPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLRIKTWQ 233
              +     ++      G GHG+SIGS     E   V  V V +  +N T NGLRIK+ +
Sbjct: 231 YKGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKSDK 285
Query: 234 GGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQD 293
             +G    + ++++ + +V  PI+ID  Y   E     +N    SD+++  +  TS T+ 
Sbjct: 286 SAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEG----SNVPDWSDITFKDV--TSETKG 339
Query: 294 AIALNCSRTVGCDNIVLEHIHIAS 317
            + LN         + ++++ + S
Sbjct: 340 VVVLNGENAKKPIEVTMKNVKLTS 363
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-106
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 3e-97
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 5e-87
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 3e-85
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 2e-84
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 9e-84
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 2e-78
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 5e-78
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 4e-66
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 3e-54
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 5e-25
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 1e-22
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 6e-20
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 1e-11
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 2e-08
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 4e-07
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 3e-06
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  317 bits (813), Expect = e-106
 Identities = 70/368 (19%), Positives = 131/368 (35%), Gaps = 57/368 (15%)

Query: 16  YNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSN 75
            N++++GAV +  TD   A   AW A C        + +P G   L    +  G   ++ 
Sbjct: 21  CNILSYGAVADNSTDVGPAITSAWAA-CKSGG---LVYIPSGNYALNTWVTLTGGSATA- 75

Query: 76  LQVQIEGNLIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLC------ 129
             +Q++G +      S        +     +   F+    G + G G  +          
Sbjct: 76  --IQLDGIIYRTGTASGNM----IAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTYGARI 129

Query: 130 ----------------------------SDDATLSNLHISAPESSPNTDGIDISASQNIH 161
                                         D  + N+ I    +    DGID+  S NI 
Sbjct: 130 LRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWGS-NIW 187

Query: 162 ILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLN 221
           + +  +   D+C+ + + ++ I V  + C    G ++GSLG       V ++  +N    
Sbjct: 188 VHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDIVYRNVYTW 244

Query: 222 ATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVS 281
           ++     IK+  GGSG    +   +         + ID ++      +   + V++++++
Sbjct: 245 SSNQMYMIKSN-GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSM--TAVAGDGVQLNNIT 301

Query: 282 YTGIHGTSI---TQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINAHGKCDDS 338
                GT     T+  I + CS T  C ++ LE I I  + S       C +A+G     
Sbjct: 302 VKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAI-WTESGSSELYLCRSAYGSGYCL 360

Query: 339 VPSVGCLK 346
             S     
Sbjct: 361 KDSSSHTS 368
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query346
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.96
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.96
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.9
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.86
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.84
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.84
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.83
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.83
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.82
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.82
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.81
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.78
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.77
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.53
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.53
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.45
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.38
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.38
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.35
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.23
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.12
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.04
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.99
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.97
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.95
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.91
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.91
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.89
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.86
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.78
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.76
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.67
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.62
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.58
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.58
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.54
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.5
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.26
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.24
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.2
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.99
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.85
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.59
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.58
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.55
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.53
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.49
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.32
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 97.27
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.1
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.03
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.9
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.76
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.54
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 96.53
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 95.49
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 94.94
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 94.61
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 92.97
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 90.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 88.98
3riq_A543 Tailspike protein; right handed beta-helix, endorh 81.16
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=1.3e-59  Score=459.89  Aligned_cols=292  Identities=25%  Similarity=0.434  Sum_probs=256.7

Q ss_pred             cCCCCCccEEEeeccccCCCCcchHHHHHHHHHHhcCCCCCCCEEEecCCCEEEeeeeeecCCCCCCceEEEEeeEEEec
Q 039868            8 RSYPGAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAP   87 (346)
Q Consensus         8 ~~~~~~~~~nV~dfGA~gdg~tddT~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~i~~l~l~~~~~~s~v~l~~~g~l~~~   87 (346)
                      |++| ++++||+||||+|||++|||+|||+|| ++|+ +.++++|+||+| +|++++|.|+     ++++|+++|+|+++
T Consensus        21 p~~~-~~~~~v~~~GA~gdg~tddt~Aiq~Ai-~~c~-~~ggg~v~vP~G-~yl~~~l~l~-----s~v~l~l~gtL~~s   91 (448)
T 3jur_A           21 PQIP-DREVNLLDFGARGDGRTDCSESFKRAI-EELS-KQGGGRLIVPEG-VFLTGPIHLK-----SNIELHVKGTIKFI   91 (448)
T ss_dssp             CCCC-SCEEEGGGGTCCCEEEEECHHHHHHHH-HHHH-HHTCEEEEECSS-EEEESCEECC-----TTEEEEESSEEEEC
T ss_pred             CCCC-CcEEEEEecccCCCCCeecHHHHHHHH-Hhhh-hcCCeEEEECCC-cEEEeeeEeC-----CCcEEEEEEEEEec
Confidence            4444 679999999999999999999999999 5676 557899999999 9999999998     89999999999999


Q ss_pred             CCCCCC-CCC----------CCcccEEEEeeeceEEEeceEEeCCC--cccccc--------------------------
Q 039868           88 EGPSSW-KGK----------DRRSWLYFVNVNGFTVNGNGEIDGQG--SQWWKL--------------------------  128 (346)
Q Consensus        88 ~~~~~~-~~~----------~~~~~i~~~~~~ni~I~G~G~idg~g--~~~~~~--------------------------  128 (346)
                      +++++| +..          ...+||.+.+++||+|+|.|+|||+|  +.||..                          
T Consensus        92 ~d~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~  171 (448)
T 3jur_A           92 PDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMA  171 (448)
T ss_dssp             CCGGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHH
T ss_pred             CCHHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhh
Confidence            999988 311          12468999999999999999999999  789841                          


Q ss_pred             ----------------c---------C-----------------------CceEEEeEEEEcCCCCCCCCeeeecCcccE
Q 039868          129 ----------------C---------S-----------------------DDATLSNLHISAPESSPNTDGIDISASQNI  160 (346)
Q Consensus       129 ----------------~---------~-----------------------~nv~i~~~~I~~~~~~~~~DGI~i~~s~nv  160 (346)
                                      .         .                       +||+|++++|.++  ++|+||||+.+|+||
T Consensus       172 ~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV  249 (448)
T 3jur_A          172 ERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYM  249 (448)
T ss_dssp             HHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEE
T ss_pred             cccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCE
Confidence                            0         0                       5666666666664  589999999999999


Q ss_pred             EEEeeEEecCCceEEeCCC-----------ceeEEEEeeEE--cCCc-eeEEecccCCCCCCCEeEEEEEeeEEeCCCce
Q 039868          161 HILNSNIATGDDCIAINTG-----------SSQINVTGLTC--GPGH-GISIGSLGKQGEAAAVEEVHVKNCTLNATQNG  226 (346)
Q Consensus       161 ~I~n~~i~~gdD~i~i~~g-----------s~nv~I~n~~~--~~~~-gi~igs~~~~~~~~~~~ni~v~n~~~~~~~~g  226 (346)
                      +|+||+|.++||||++|++           ++||+|+||+|  ..+| ||+|||++    .++++||+|+||+|.++.+|
T Consensus       250 ~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v~n~~~~~t~~G  325 (448)
T 3jur_A          250 LIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVARNNVYMNVERA  325 (448)
T ss_dssp             EEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEEESCEEESCSEE
T ss_pred             EEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEEEEEEEecccce
Confidence            9999999999999999998           89999999999  5566 79999996    67899999999999999999


Q ss_pred             EEEEEecCCCceEEeEEEEeeEEecCCccE-EEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEeccCceEEEEccCCCCe
Q 039868          227 LRIKTWQGGSGYARKITFNDITLTDVDNPI-IIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGC  305 (346)
Q Consensus       227 i~i~s~~~~~g~v~nI~~~ni~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~~  305 (346)
                      ++||++.+++|.|+||+|+|++|.++.+|+ .|++.|+..    .....+.|+||+|+||+++. ...++.+.|.++.||
T Consensus       326 irIKt~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~----~~~~~~~i~nI~~~NI~~t~-~~~~i~i~g~~~~p~  400 (448)
T 3jur_A          326 LRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNE----EGEYLPVVRSVFVKNLKATG-GKYAVRIEGLENDYV  400 (448)
T ss_dssp             EEEECCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGC----CCSCCCEEEEEEEESCEEEE-CSEEEEEECBTTBCE
T ss_pred             EEEEEEcCCCceEeeEEEEEEEEECCccccEEEEeeccCC----CCCCCceEEEEEEEeEEEEe-cceEEEEEeCCCCCE
Confidence            999999888899999999999999999988 999998764    12245689999999999987 577899999999999


Q ss_pred             ecEEEEeEEEEeCC
Q 039868          306 DNIVLEHIHIASSN  319 (346)
Q Consensus       306 ~ni~~~nv~v~~~~  319 (346)
                      +||+|+||++++..
T Consensus       401 ~~I~~~nv~i~~~~  414 (448)
T 3jur_A          401 KDILISDTIIEGAK  414 (448)
T ss_dssp             EEEEEEEEEEESCS
T ss_pred             eeEEEEEEEEEccc
Confidence            99999999999754
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase, lipopolysaccharide, viral protein; 1.50A {Siphovirus 9na} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 346
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 7e-64
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-58
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-51
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 9e-50
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 4e-48
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-46
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 2e-40
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 2e-38
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  206 bits (526), Expect = 7e-64
 Identities = 69/352 (19%), Positives = 133/352 (37%), Gaps = 49/352 (13%)

Query: 16  YNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSN 75
            N++++GAV +  TD   A   AW A      +   + +P G   L    +  G   ++ 
Sbjct: 21  CNILSYGAVADNSTDVGPAITSAWAAC----KSGGLVYIPSGNYALNTWVTLTGGSATA- 75

Query: 76  LQVQIEGNLIAPEGPSSW------------------------------KGKDRRSWLYFV 105
             +Q++G +      S                                +G      L   
Sbjct: 76  --IQLDGIIYRTGTASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTYGARILRLT 133

Query: 106 NVNGFTVNGNGEIDGQGSQWWKLCSDDATLSNLHISAPESSPNTDGIDISASQNIHILNS 165
           +V  F+V+    +D     +      D  + N+ I         DGID+  S  I + + 
Sbjct: 134 DVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGNE-GGLDGIDVWGSN-IWVHDV 191

Query: 166 NIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQN 225
            +   D+C+ + + ++ I V  + C    G ++GSLG   +   V ++  +N    ++  
Sbjct: 192 EVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VTDIVYRNVYTWSSNQ 248

Query: 226 GLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGI 285
              IK+  GGSG    +   +         + ID ++      +   + V++++++    
Sbjct: 249 MYMIKSN-GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAG--DGVQLNNITVKNW 305

Query: 286 HGTSI---TQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINAHGK 334
            GT     T+  I + CS T  C ++ LE I I + +     Y  C +A+G 
Sbjct: 306 KGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYL-CRSAYGS 356
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query346
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.82
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.79
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.78
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.77
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.75
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.73
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.71
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.69
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.32
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.88
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 98.69
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 98.67
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.51
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 98.51
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 98.5
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.4
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 98.1
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.76
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.53
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 97.5
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.46
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.92
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 96.83
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.81
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.63
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.45
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.94
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.74
d1v0ea1 516 Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 90.36
d1tywa_554 P22 tailspike protein {Salmonella phage P22 [TaxId 84.78
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=1.8e-56  Score=433.58  Aligned_cols=304  Identities=22%  Similarity=0.396  Sum_probs=257.8

Q ss_pred             CCccEEEeeccccCCCCcchHHHHHHHHHHhcCCCCCCCEEEecCCCEEEee-eeeecCCCCCCceEEEEeeEEEecCCC
Q 039868           12 GAMPYNVMNFGAVGNGVTDDSQAFIKAWNAVCGDTSNNPTLQVPQGKTFLLQ-PTSFQGPCKSSNLQVQIEGNLIAPEGP   90 (346)
Q Consensus        12 ~~~~~nV~dfGA~gdg~tddT~Aiq~Ai~~a~~~~~~gg~V~iP~G~ty~i~-~l~l~~~~~~s~v~l~~~g~l~~~~~~   90 (346)
                      ..+++||+||||+|||++|||+|||+|| +||+   +|++|+||+| +|++. +|.|++.   +++.|+++|+|++....
T Consensus        17 ~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai-~ac~---~gg~V~iP~G-ty~l~~~i~l~g~---~~~~l~~~G~i~~~~~~   88 (422)
T d1rmga_          17 ATKTCNILSYGAVADNSTDVGPAITSAW-AACK---SGGLVYIPSG-NYALNTWVTLTGG---SATAIQLDGIIYRTGTA   88 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBCHHHHHHHH-HHHT---BTCEEEECSS-EEEECSCEEEESC---EEEEEEECSEEEECCCC
T ss_pred             CCcEEEEecCCCCCCCCccCHHHHHHHH-HhcC---CCCEEEECCC-cEEEeCcEEEcCC---CceEEEEeEEEEeccCC
Confidence            3569999999999999999999999999 6897   4889999999 99885 7999876   78999999999987665


Q ss_pred             CCCCCCCCcccEEEEeeeceEEEeceEEeCCCcccccccC----------------------------------CceEEE
Q 039868           91 SSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWKLCS----------------------------------DDATLS  136 (346)
Q Consensus        91 ~~~~~~~~~~~i~~~~~~ni~I~G~G~idg~g~~~~~~~~----------------------------------~nv~i~  136 (346)
                      ..|.    ..+....+.+.+.+.|.|+|||+|..||....                                  ++++|+
T Consensus        89 ~~~~----~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c~~v~i~  164 (422)
T d1rmga_          89 SGNM----IAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVY  164 (422)
T ss_dssp             SSEE----EEEEEEEEEEEECSSSCCEEECCTHHHHTTTCCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEEEEEEE
T ss_pred             ccCE----EEeccCccEEEEEeecceEEecCcceecCCCCCCCcEEEEEeeeeeEEECcEecCCCceEEEEeccccEEEE
Confidence            4432    22334444556666788999999988886320                                  677777


Q ss_pred             eEEEEcCCCCCCCCeeeecCcccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceeEEecccCCCCCCCEeEEEEE
Q 039868          137 NLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVK  216 (346)
Q Consensus       137 ~~~I~~~~~~~~~DGI~i~~s~nv~I~n~~i~~gdD~i~i~~gs~nv~I~n~~~~~~~gi~igs~~~~~~~~~~~ni~v~  216 (346)
                      |++|.++ ..+|+||||+.+ +||+|+||+|.++||||+++++++||+|+|++|..+||++|||++.   ...++||+|+
T Consensus       165 nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~---~~~V~nV~v~  239 (422)
T d1rmga_         165 NMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDIVYR  239 (422)
T ss_dssp             EEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECT---TEEEEEEEEE
T ss_pred             eeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccC---CCCEEEEEEE
Confidence            7777775 357999999976 5899999999999999999999999999999999999999999864   4579999999


Q ss_pred             eeEEeCCCceEEEEEecCCCceEEeEEEEeeEEecCCccEEEEeeeCCCCCCCCCCCceeEEeEEEEeEEEEec---cCc
Q 039868          217 NCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSI---TQD  293 (346)
Q Consensus       217 n~~~~~~~~gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~---~~~  293 (346)
                      ||++.++.+++++|++. +.|.|+||+|+|++|+++++||.|++.|++...++  .....|+||+|+||+++..   ...
T Consensus       240 n~~~~~s~~g~~ik~~~-g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~~--~~~v~isnIt~~Ni~GT~~~~~~~~  316 (422)
T d1rmga_         240 NVYTWSSNQMYMIKSNG-GSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVA--GDGVQLNNITVKNWKGTEANGATRP  316 (422)
T ss_dssp             EEEEESSSCSEEEEEBB-CCEEEEEEEEEEEEEEEESCSEEEETBCTTSCCBS--SSCCEEEEEEEEEEEEEESCTTTSC
T ss_pred             eEEEeCCCceEEEEEcC-CCceecceEEEEEEEecccccEEEecccCCCCCCC--CCCeEEEEEEEEeEEEEecCCcccc
Confidence            99999999999999874 45899999999999999999999999998755433  3467899999999999864   355


Q ss_pred             eEEEEccCCCCeecEEEEeEEEEeCCCCCCcceEEeccccccC
Q 039868          294 AIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTCINAHGKCD  336 (346)
Q Consensus       294 ~~~i~~~~~~~~~ni~~~nv~v~~~~~~~~~~~~c~nv~~~~~  336 (346)
                      ++.|.|.+..||+||+|+||+|+.+. +..+.+.|+|++|...
T Consensus       317 ~i~l~Cs~~~pc~ni~l~ni~l~~~~-g~~~~~~C~na~G~~~  358 (422)
T d1rmga_         317 PIRVVCSDTAPCTDLTLEDIAIWTES-GSSELYLCRSAYGSGY  358 (422)
T ss_dssp             SEEEECBTTBCEEEEEEEEEEEEESS-SSCEEEEEESEEEEST
T ss_pred             cEEEEcCCCCCCcceEEEEEEEEcCC-CCCcceEEECceeeEE
Confidence            79999999999999999999999876 4567789999998653
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure