Citrus Sinensis ID: 039886

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MYKGCAEKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDKSLKSLHRTEDRASTEETNEPDCDKGSAVDFSGYADTYSGYMQHLWQQQNAFSQIPSFKDVSFDSIVNLDEPFQHDGT
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccccccEEEEEEcccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEcccccccccccccccHcccccEEEccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEcccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mykgcaekekefyfftprdrkykngtrpnraagegywkatgadksikhngavvgFKKTLVFyegkppkgdktFWIMHEyrvnndsppstrtrlstdmrlddWVLCRIYYKERSDKSLKSLHrtedrasteetnepdcdkgsavdfsgyadtySGYMQHLWQQQnafsqipsfkdvsfdsivnldepfqhdgt
Flexible Loop (DISEMBL)
mykgcaekekefyfftprdrkykngtrpnraagegywkatgadksikhngaVVGFKKTLVFYEGKPPKGDKTFWIMHEyrvnndsppstrtrlstdmrlddWVLCRIYykersdkslkslhrtedrasteetnepdcdkgsAVDFSGYADTYSGYMQHLWQQQNAFSQIPSFKDVSFDSIVNldepfqhdgt
Low Complexity Region (SEG)
MYKGCAEKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDKSLKSLHRTEDRASTEETNEPDCDKGSAVDFSGYADTYSGYMQHLWQQQNAFSQIPSFKDVSFDSIVNLDEPFQHDGT
Disordered region (IsUnstruct)
***********FYFFTP***************GEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRV**************DMRLDDWVLCRIYYK********************************VDFSGYADTYSGYMQHLWQQQNAFSQIPSFKDVSFDSIVN**********
Disordered Region (DISOPRED)
******EKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRVNN*****************DWVLCRIY************************************************************************************
Disordered Region (DISEMBL)
MYKGCAEKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDK**********************DKGSAVDFSGYADTYSGYMQHLWQQQNAFSQIPSFKDVSFDSIVNLDEPFQHDGT
Disordered Region (DISPRO)
MYKGCAEKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRVNND***********DMRLDDWVLCRIYYKER********************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYKGCAEKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDKSLKSLHRTEDRASTEETNEPDCDKGSAVDFSGYADTYSGYMQHLWQQQNAFSQIPSFKDVSFDSIVNLDEPFQHDGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q7EZT1	276	NAC domain-containing pro	yes	no	0.567	0.394	0.590	8e-33
A0SPJ6	396	NAC transcription factor	N/A	no	0.531	0.257	0.619	9e-33
A2YMR0	425	NAC transcription factor	N/A	no	0.531	0.24	0.588	2e-32
A0SPJ9	402	NAC transcription factor	N/A	no	0.734	0.350	0.481	2e-32
O49255	268	NAC transcription factor	no	no	0.557	0.399	0.614	3e-32
Q8H4S4	425	NAC transcription factor	no	no	0.531	0.24	0.579	4e-32
Q9LDY8	317	NAC domain-containing pro	no	no	0.515	0.312	0.638	1e-31
Q8GY42	323	NAC transcription factor	no	no	0.557	0.331	0.605	1e-31
Q9C932	317	NAC domain-containing pro	no	no	0.515	0.312	0.638	2e-31
A0SPJ4	405	NAC transcription factor	N/A	no	0.645	0.306	0.517	2e-31

>sp|Q7EZT1|NAC67_ORYSJ NAC domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=NAC67 PE=2 SV=1

 Score =  139 bits (351), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 79/110 (71%), Gaps = 1/110 (0%)

Query: 10  KEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKG 69
           +E+YFFTPRDRKY NG+RPNRAA  GYWKATGADK + HNG   G KK LVFY GKPP+G
Sbjct: 71  REWYFFTPRDRKYPNGSRPNRAAASGYWKATGADKPVLHNGRTAGIKKALVFYHGKPPRG 130

Query: 70  DKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDKSLKS 119
            KT WIMHEYR+      +     +  +RLDDWVLCR+Y K+   + ++S
Sbjct: 131 VKTEWIMHEYRLAKKG-GAAAAAGAGALRLDDWVLCRLYNKKNEWEKMQS 179

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score =  139 bits (351), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 70/113 (61%), Positives = 77/113 (68%), Gaps = 11/113 (9%)

Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGA---VVGFKKTLVFYEGK 65
           E+E+YFF+PRDRKY NG RPNRAA  GYWKATG DK I  +G     VG KK LVFY GK
Sbjct: 81  EQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKKALVFYRGK 140

Query: 66  PPKGDKTFWIMHEYRVNNDS--------PPSTRTRLSTDMRLDDWVLCRIYYK 110
           PPKG KT WIMHEYR+ + S        PP T    S  +RLDDWVLCRIY K
Sbjct: 141 PPKGLKTNWIMHEYRLTDASSSATTSRPPPVTGGSRSASLRLDDWVLCRIYKK 193

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 80/119 (67%), Gaps = 17/119 (14%)

Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAV---VGFKKTLVFYEGK 65
           E+E+YFF+PRDRKY NG RPNRAA  GYWKATG DK I  +G+    VG KK LVFY GK
Sbjct: 82  EQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMASGSTREKVGVKKALVFYRGK 141

Query: 66  PPKGDKTFWIMHEYRVNNDS-------------PPST-RTRLSTDMRLDDWVLCRIYYK 110
           PPKG KT WIMHEYR+ + S             PP T  +R +  +RLDDWVLCRIY K
Sbjct: 142 PPKGVKTNWIMHEYRLTDTSSSAAAVATTRQPPPPITGGSRGAVSLRLDDWVLCRIYKK 200

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|A0SPJ9|NAM2_HORVD NAC transcription factor NAM-2 OS=Hordeum vulgare var. distichum GN=NAM-2 PE=4 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/158 (48%), Positives = 88/158 (55%), Gaps = 17/158 (10%)

Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGA---VVGFKKTLVFYEGK 65
           E+E+YFF+PRDRKY NG RPNRAA  GYWKATG DK I  +G     VG K  LVFY GK
Sbjct: 81  EQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKXALVFYRGK 140

Query: 66  PPKGDKTFWIMHEYRVNNDS--------PPSTRTRLSTDMRLDDWVLCRIYYK------E 111
           PPKG KT WIMHEYR+ + S        PP T    +  +RLDDWVLCRIY K       
Sbjct: 141 PPKGLKTNWIMHEYRLTDASSSAATSRPPPVTGGSRAASLRLDDWVLCRIYKKINKAAAA 200

Query: 112 RSDKSLKSLHRTEDRASTEETNEPDCDKGSAVDFSGYA 149
              +S++     ED  +        C  G     S YA
Sbjct: 201 DQQRSMECEDSVEDAVTAYPPYATACMTGEGAHGSNYA 238

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|O49255|NAC29_ARATH NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1

 Score =  138 bits (347), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/109 (61%), Positives = 80/109 (73%), Gaps = 2/109 (1%)

Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
           E E+YFF+PR+RKY NG RPNRAA  GYWKATG DK+I    + VG KK LVFY+G+PPK
Sbjct: 62  ENEWYFFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSNVGVKKALVFYKGRPPK 121

Query: 69  GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDKSL 117
           G KT WIMHEYR+++    ST+   S  MRLD+WVLCRIY K  + K L
Sbjct: 122 GIKTDWIMHEYRLHDSRKASTKRNGS--MRLDEWVLCRIYKKRGASKLL 168

May function in the transition between active cell division and cell expansion.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score =  137 bits (345), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/119 (57%), Positives = 80/119 (67%), Gaps = 17/119 (14%)

Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAV---VGFKKTLVFYEGK 65
           E+E+YFF+PRDRKY NG RPNRAA  GYWKATG DK I  +G+    VG KK LVFY GK
Sbjct: 82  EQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMSSGSTREKVGVKKALVFYRGK 141

Query: 66  PPKGDKTFWIMHEYRVNNDS-------------PPST-RTRLSTDMRLDDWVLCRIYYK 110
           PPKG KT WIMHEYR+ + S             PP T  ++ +  +RLDDWVLCRIY K
Sbjct: 142 PPKGVKTNWIMHEYRLTDTSSSAAAVATTRRPPPPITGGSKGAVSLRLDDWVLCRIYKK 200

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LDY8|NAC55_ARATH NAC domain-containing protein 55 OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 74/105 (70%), Gaps = 6/105 (5%)

Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
           EKE+YFF+PRDRKY NG+RPNR AG GYWKATG DK I   G  VG KK LVFY GK PK
Sbjct: 67  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVISTEGRRVGIKKALVFYIGKAPK 126

Query: 69  GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERS 113
           G KT WIMHEYR+   S      R +   +LDDWVLCRIY K+ S
Sbjct: 127 GTKTNWIMHEYRLIEPS------RRNGSTKLDDWVLCRIYKKQTS 165

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY42|NAC25_ARATH NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/114 (60%), Positives = 76/114 (66%), Gaps = 7/114 (6%)

Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSI-KHNGAVVGFKKTLVFYEGKPP 67
           E E+YFF+PRDRKY NG RPNRAA  GYWKATG DK I   N   VG KK LVFY GKPP
Sbjct: 69  EHEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHKVGVKKALVFYGGKPP 128

Query: 68  KGDKTFWIMHEYRVNNDS------PPSTRTRLSTDMRLDDWVLCRIYYKERSDK 115
           KG KT WIMHEYR+ + +      PP   T     +RLDDWVLCRIY K  S +
Sbjct: 129 KGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNSSQR 182

Transcription factor of the NAC family. May be associated with anther development and pollen production.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C932|NAC19_ARATH NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 74/105 (70%), Gaps = 6/105 (5%)

Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
           EKE+YFF+PRDRKY NG+RPNR AG GYWKATG DK I   G  VG KK LVFY GK PK
Sbjct: 67  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 126

Query: 69  GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERS 113
           G KT WIMHEYR+   S      R +   +LDDWVLCRIY K+ S
Sbjct: 127 GTKTNWIMHEYRLIEPS------RRNGSTKLDDWVLCRIYKKQSS 165

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|A0SPJ4|NAMB1_TRIDC NAC transcription factor NAM-B1 OS=Triticum dicoccoides GN=NAM-B1 PE=4 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/141 (51%), Positives = 84/141 (59%), Gaps = 17/141 (12%)

Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGA-------VVGFKKTLVF 61
           E+E+YFF+PRDRKY NG RPNRAA  GYWKATG DK I  +G         +G KK LVF
Sbjct: 87  EQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVF 146

Query: 62  YEGKPPKGDKTFWIMHEYRV---------NNDSPPST-RTRLSTDMRLDDWVLCRIYYKE 111
           Y GKPPKG KT WIMHEYR+          N  PP T  +R +  +RLDDWVLCRIY K 
Sbjct: 147 YRGKPPKGLKTNWIMHEYRLTDASGSTTATNRPPPVTGGSRAAASLRLDDWVLCRIYKKI 206

Query: 112 RSDKSLKSLHRTEDRASTEET 132
               +      TE   S E+ 
Sbjct: 207 NKAAAGDQQRNTECEDSVEDA 227

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) and the hexaploid wheat (T.aestivum) carry a one bp insertion generating a non-functional allele of this gene. They have a delayed senescence and a lower grain protein, zinc and iron content (PubMed:17124321).

Triticum dicoccoides (taxid: 85692)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
224106189	513	NAC domain protein, IPR003441 [Populus t	0.645	0.241	0.617	1e-37
224106187	386	NAC domain protein, IPR003441 [Populus t	0.520	0.259	0.676	1e-34
118490007	282	NAC domain protein NAC2 [Solanum tuberos	0.692	0.471	0.539	4e-34
167614350	278	NAC transcription factor NAP [Mikania mi	0.859	0.593	0.457	2e-33
302818721	223	hypothetical protein SELMODRAFT_47266 [S	0.552	0.475	0.648	3e-33
323388569	297	NAC transcription factor [Zea mays]	0.645	0.417	0.540	5e-33
113205414	194	NAC-domain containing protein 29 , putat	0.630	0.623	0.590	5e-33
239053200	300	putative NAC domain transcription factor	0.645	0.413	0.540	5e-33
113205453	199	NAC-domain containing protein 29 , putat	0.630	0.608	0.590	6e-33
242043390	290	hypothetical protein SORBIDRAFT_02g00668	0.531	0.351	0.637	6e-33

>gi|224106189|ref|XP_002314078.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222850486|gb|EEE88033.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/128 (61%), Positives = 96/128 (75%), Gaps = 4/128 (3%)

Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
           EKE+YFFTPRDRKYKNG+RPNRAA  GYWKATGADK+I H+ AVVG++K LV+Y GK PK
Sbjct: 162 EKEWYFFTPRDRKYKNGSRPNRAANGGYWKATGADKNITHDEAVVGYRKALVYYTGKAPK 221

Query: 69  GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDKSLKSLHRTEDRAS 128
           GDKT WIMHE+RVN   P     R   DMRLD+WVLCRIY K+    ++++  R E+R +
Sbjct: 222 GDKTNWIMHEFRVNEPIPQVRNHR--DDMRLDEWVLCRIYKKQEKRNNVRNEQRNEERTN 279

Query: 129 T--EETNE 134
              E+ NE
Sbjct: 280 VINEQRNE 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106187|ref|XP_002314077.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222850485|gb|EEE88032.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 86/102 (84%), Gaps = 2/102 (1%)

Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
           E+E+YFFTPRD+KY+NGTRPNRAAG GYWKATGADK I H+ A+VG++K+LV+Y GK PK
Sbjct: 137 EREWYFFTPRDKKYRNGTRPNRAAGGGYWKATGADKKIVHDKAIVGYRKSLVYYNGKAPK 196

Query: 69  GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYK 110
           GDKT W+MHE+R+   +PP  R  ++ DMRLD+WVLCRIY K
Sbjct: 197 GDKTNWMMHEFRMEAAAPP-IRNNIN-DMRLDEWVLCRIYKK 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118490007|gb|ABK96797.1| NAC domain protein NAC2 [Solanum tuberosum]

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/139 (53%), Positives = 92/139 (66%), Gaps = 6/139 (4%)

Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
           E E+YFFTPRDRKY NG RPNRAA  GYWKATG DK+I      VG KK LVFY+GKPPK
Sbjct: 62  ENEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKAIYSANKYVGIKKALVFYKGKPPK 121

Query: 69  GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDKSLKSLHRTEDRAS 128
           G KT WIMHEYR+ +DS   T ++ S  MRLDDWVLCRIY K+   K+++ +     +  
Sbjct: 122 GVKTDWIMHEYRL-SDSKSQTYSKQSGSMRLDDWVLCRIYKKKNLGKTIEMM-----KVE 175

Query: 129 TEETNEPDCDKGSAVDFSG 147
            EE    +    +A++  G
Sbjct: 176 VEELEAQNVSINNAIEVVG 194

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|167614350|gb|ABZ89747.1| NAC transcription factor NAP [Mikania micrantha] gi|269856430|gb|ACZ51442.1| NAC transcription factor NAP [Mikania micrantha]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/175 (45%), Positives = 102/175 (58%), Gaps = 10/175 (5%)

Query: 8   KEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPP 67
           +EKE+YFF+PRDRKY NG RPNRAA  GYWKATG DK+I      VG KK LVFY+G+PP
Sbjct: 61  EEKEWYFFSPRDRKYPNGIRPNRAAVSGYWKATGTDKAIYSGSKYVGVKKALVFYKGRPP 120

Query: 68  KGDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDKSLKSLHRTEDRA 127
           KG KT WIMHEYR+N     S  T+    MRLDDWVLCRIY K+  ++ L      E R 
Sbjct: 121 KGTKTDWIMHEYRLNESR--SQPTKRIGSMRLDDWVLCRIYKKKSVERPL------EQRE 172

Query: 128 STEETNEPDCDKGSAVDFSGYADTYSGYMQHLWQQQN--AFSQIPSFKDVSFDSI 180
               T     D   A +        +  + HLW  ++  +   +   +D ++D+I
Sbjct: 173 ENINTQNTPGDNHHATEIQSMKIPRTFSLSHLWDLESFGSIYHLLDNQDTNYDNI 227

Source: Mikania micrantha

Species: Mikania micrantha

Genus: Mikania

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302818721|ref|XP_002991033.1| hypothetical protein SELMODRAFT_47266 [Selaginella moellendorffii] gi|300141127|gb|EFJ07841.1| hypothetical protein SELMODRAFT_47266 [Selaginella moellendorffii]

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/108 (64%), Positives = 79/108 (73%), Gaps = 2/108 (1%)

Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
           E+E+YFF+PRDRKY NG RPNRAAG GYWKATG DK I  +G  VG KK LVFY G+ PK
Sbjct: 62  EREWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKPISSDGCKVGVKKALVFYRGRAPK 121

Query: 69  GDKTFWIMHEYRVNNDSPPSTRTRLST--DMRLDDWVLCRIYYKERSD 114
           G KT WIMHEYR+ + S  S R  L     +RLDDWVLCRIY K+ SD
Sbjct: 122 GSKTSWIMHEYRLADASGASNRLSLRKKGSLRLDDWVLCRIYKKQSSD 169

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|323388569|gb|ADX60089.1| NAC transcription factor [Zea mays]

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 84/124 (67%)

Query: 10  KEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKG 69
           +E+YFFTPRDRKY NG+RPNRAAG GYWKATGADK ++H G   G KK LVFY GKPP+G
Sbjct: 75  REWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPVEHEGRTAGIKKALVFYHGKPPRG 134

Query: 70  DKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDKSLKSLHRTEDRAST 129
            KT WIMHEYR+        +   +  +RLDDWVLCR+Y K+   + ++     E +A  
Sbjct: 135 VKTEWIMHEYRLAEAGGARAKKSGAGTLRLDDWVLCRLYNKKNEWEKMQQQKEKEKKAME 194

Query: 130 EETN 133
            E +
Sbjct: 195 SEAS 198

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113205414|gb|ABI34386.1| NAC-domain containing protein 29 , putative [Solanum demissum]

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/122 (59%), Positives = 86/122 (70%), Gaps = 1/122 (0%)

Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
           E E+YFFTPRDRKY NG RPNRAA  GYWKATG DK+I      VG KK LVFY+GKPPK
Sbjct: 62  ENEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKAIYSANKYVGIKKALVFYKGKPPK 121

Query: 69  GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDKSLKSLHRTEDRAS 128
           G KT WIMHEYR+ +DS   T ++ S  MRLDDWVLCRIY K+   K+++ +   E+   
Sbjct: 122 GVKTDWIMHEYRL-SDSKSQTYSKQSGSMRLDDWVLCRIYKKKNLGKTIEMMKVEEEELE 180

Query: 129 TE 130
            +
Sbjct: 181 AQ 182

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239053200|ref|NP_001141629.2| putative NAC domain transcription factor superfamily protein [Zea mays] gi|238908836|gb|ACF86750.2| unknown [Zea mays] gi|414884043|tpg|DAA60057.1| TPA: putative NAC domain transcription factor superfamily protein [Zea mays]

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 84/124 (67%)

Query: 10  KEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKG 69
           +E+YFFTPRDRKY NG+RPNRAAG GYWKATGADK ++H G   G KK LVFY GKPP+G
Sbjct: 78  REWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPVEHEGRTAGIKKALVFYHGKPPRG 137

Query: 70  DKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDKSLKSLHRTEDRAST 129
            KT WIMHEYR+        +   +  +RLDDWVLCR+Y K+   + ++     E +A  
Sbjct: 138 VKTEWIMHEYRLAEAGGARAKKSGAGTLRLDDWVLCRLYNKKNEWEKMQQQKEKEKKAME 197

Query: 130 EETN 133
            E +
Sbjct: 198 SEAS 201

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113205453|gb|AAW28573.2| NAC-domain containing protein 29 , putative [Solanum demissum]

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 72/122 (59%), Positives = 86/122 (70%), Gaps = 1/122 (0%)

Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
           E E+YFFTPRDRKY NG RPNRAA  GYWKATG DK+I      VG KK LVFY+GKPPK
Sbjct: 62  ENEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKAIYSANKYVGIKKALVFYKGKPPK 121

Query: 69  GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDKSLKSLHRTEDRAS 128
           G KT WIMHEYR+ +DS   T ++ S  MRLDDWVLCRIY K+   K+++ +   E+   
Sbjct: 122 GVKTDWIMHEYRL-SDSKSQTYSKQSGSMRLDDWVLCRIYKKKNLGKTIEMMKVEEEELE 180

Query: 129 TE 130
            +
Sbjct: 181 AQ 182

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242043390|ref|XP_002459566.1| hypothetical protein SORBIDRAFT_02g006680 [Sorghum bicolor] gi|241922943|gb|EER96087.1| hypothetical protein SORBIDRAFT_02g006680 [Sorghum bicolor]

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 78/102 (76%)

Query: 10  KEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKG 69
           +E+YFFTPRDRKY NG+RPNRAAG GYWKATGADK ++H G  VG KK LVFY GKPP+G
Sbjct: 74  REWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPVEHRGRTVGIKKALVFYHGKPPRG 133

Query: 70  DKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKE 111
            KT WIMHEYR+ +      +   +  +RLDDWVLCR+Y K+
Sbjct: 134 VKTEWIMHEYRLADAGGARAKKSGNGTLRLDDWVLCRLYNKK 175

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2160634	312	NAC102 "NAC domain containing	0.630	0.387	0.566	3.4e-34
TAIR|locus:2011531	317	NAC019 "NAC domain containing	0.515	0.312	0.666	9e-34
TAIR|locus:2095908	359	NAC047 "NAC domain containing	0.411	0.220	0.654	1.5e-33
TAIR|locus:2007166	268	NAP "NAC-like, activated by AP	0.630	0.451	0.560	1.4e-32
TAIR|locus:2204685	253	NAC032 "NAC domain containing	0.515	0.391	0.679	2.9e-32
TAIR|locus:504956335	283	ATAF2 [Arabidopsis thaliana (t	0.645	0.438	0.550	4.7e-32
TAIR|locus:2008490	323	NAC025 "NAC domain containing	0.557	0.331	0.605	1.3e-31
TAIR|locus:2090176	317	NAC3 "NAC domain containing pr	0.515	0.312	0.666	1.3e-31
TAIR|locus:2198225	289	ATAF1 [Arabidopsis thaliana (t	0.520	0.346	0.660	2e-31
TAIR|locus:2124014	314	RD26 "RESPONSIVE TO DESICCATIO	0.661	0.404	0.550	2e-31

TAIR|locus:2160634 NAC102 "NAC domain containing protein 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
 Identities = 72/127 (56%), Positives = 89/127 (70%)

Query:     9 EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
             EKE+YFF+ RDRKY NG+RPNRAAG GYWKATGADK I      +G KK LVFY GK PK
Sbjct:   103 EKEWYFFSHRDRKYPNGSRPNRAAGTGYWKATGADKPIG-KPKTLGIKKALVFYAGKAPK 161

Query:    69 GDKTFWIMHEYRVNN-DSPPSTRTRLSTDMRLDDWVLCRIYYKERS-DKSLKSL-HRTED 125
             G KT WIMHEYR+ N D   ST  +   ++RLDDWVLCRIY K+ + +K L +   +  +
Sbjct:   162 GIKTNWIMHEYRLANVDRSASTNKK--NNLRLDDWVLCRIYNKKGTMEKYLPAAAEKPTE 219

Query:   126 RASTEET 132
             + ST ++
Sbjct:   220 KMSTSDS 226

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2011531 NAC019 "NAC domain containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
 Identities = 70/105 (66%), Positives = 76/105 (72%)

Query:     9 EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
             EKE+YFF+PRDRKY NG+RPNR AG GYWKATG DK I   G  VG KK LVFY GK PK
Sbjct:    67 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 126

Query:    69 GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERS 113
             G KT WIMHEYR+     PS R   ST  +LDDWVLCRIY K+ S
Sbjct:   127 GTKTNWIMHEYRLIE---PSRRNG-ST--KLDDWVLCRIYKKQSS 165

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2095908 NAC047 "NAC domain containing protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 55/84 (65%), Positives = 60/84 (71%)

Query:     9 EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIK-HNGAV----VGFKKTLVFYE 63
             EKE+YFF+PRDRKY NG RPNRAA  GYWKATG DK I   NG      +G KK LVFY 
Sbjct:    63 EKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVPNGEGFHENIGIKKALVFYR 122

Query:    64 GKPPKGDKTFWIMHEYRVNNDSPP 87
             GKPPKG KT WIMHEYR+ +   P
Sbjct:   123 GKPPKGVKTNWIMHEYRLADSLSP 146

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

TAIR|locus:2007166 NAP "NAC-like, activated by AP3/PI" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 69/123 (56%), Positives = 83/123 (67%)

Query:     9 EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
             E E+YFF+PR+RKY NG RPNRAA  GYWKATG DK+I    + VG KK LVFY+G+PPK
Sbjct:    62 ENEWYFFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSNVGVKKALVFYKGRPPK 121

Query:    69 GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDKSLKSLHRTEDRAS 128
             G KT WIMHEYR+++    ST+   S  MRLD+WVLCRIY K  + K L       D   
Sbjct:   122 GIKTDWIMHEYRLHDSRKASTKRNGS--MRLDEWVLCRIYKKRGASKLLNEQEGFMDEVL 179

Query:   129 TEE 131
              E+
Sbjct:   180 MED 182

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010150 "leaf senescence" evidence=IMP

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

TAIR|locus:2204685 NAC032 "NAC domain containing protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 70/103 (67%), Positives = 78/103 (75%)

Query:     9 EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
             EKE+YFF+PRDRKY NG+RPNRAAG GYWKATGADK I     V G KK LVFY GKPP 
Sbjct:    63 EKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGRPKPV-GIKKALVFYSGKPPN 121

Query:    69 GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKE 111
             G+KT WIMHEYR+  D   S R + S  +RLDDWVLCRIY K+
Sbjct:   122 GEKTNWIMHEYRLA-DVDRSVRKKNS--LRLDDWVLCRIYNKK 161

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:504956335 ATAF2 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 71/129 (55%), Positives = 87/129 (67%)

Query:     9 EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
             EKE+YFF+PRDRKY NG+RPNRAAG GYWKATGADK I      +G KK LVFY GK PK
Sbjct:    60 EKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIG-KPKTLGIKKALVFYAGKAPK 118

Query:    69 GDKTFWIMHEYRVNN-DSPPSTRTRLSTDMRLDDWVLCRIYYKERS-DKSLKSLHRTEDR 126
             G KT WIMHEYR+ N D   S   +   ++RLDDWVLCRIY K+ + +K   +  +    
Sbjct:   119 GIKTNWIMHEYRLANVDRSASVNKK--NNLRLDDWVLCRIYNKKGTMEKYFPADEKPRTT 176

Query:   127 ASTEETNEP 135
                E+++ P
Sbjct:   177 TMAEQSSSP 185

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0008361 "regulation of cell size" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009620 "response to fungus" evidence=IMP

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0043424 "protein histidine kinase binding" evidence=IPI

TAIR|locus:2008490 NAC025 "NAC domain containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 69/114 (60%), Positives = 76/114 (66%)

Query:     9 EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSI-KHNGAVVGFKKTLVFYEGKPP 67
             E E+YFF+PRDRKY NG RPNRAA  GYWKATG DK I   N   VG KK LVFY GKPP
Sbjct:    69 EHEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHKVGVKKALVFYGGKPP 128

Query:    68 KGDKTFWIMHEYRVNNDS------PPSTRTRLSTDMRLDDWVLCRIYYKERSDK 115
             KG KT WIMHEYR+ + +      PP   T     +RLDDWVLCRIY K  S +
Sbjct:   129 KGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNSSQR 182

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2090176 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 70/105 (66%), Positives = 76/105 (72%)

Query:     9 EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
             EKE+YFF+PRDRKY NG+RPNR AG GYWKATG DK I   G  VG KK LVFY GK PK
Sbjct:    67 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVISTEGRRVGIKKALVFYIGKAPK 126

Query:    69 GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERS 113
             G KT WIMHEYR+     PS R   ST  +LDDWVLCRIY K+ S
Sbjct:   127 GTKTNWIMHEYRLIE---PSRRNG-ST--KLDDWVLCRIYKKQTS 165

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2198225 ATAF1 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 68/103 (66%), Positives = 79/103 (76%)

Query:     9 EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
             EKE+YFF+PRDRKY NG+RPNR+AG GYWKATGADK I     V G KK LVFY GK PK
Sbjct:    60 EKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATGADKPIGLPKPV-GIKKALVFYAGKAPK 118

Query:    69 GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKE 111
             G+KT WIMHEYR+  D   S R + ++ +RLDDWVLCRIY K+
Sbjct:   119 GEKTNWIMHEYRLA-DVDRSVRKKKNS-LRLDDWVLCRIYNKK 159

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2124014 RD26 "RESPONSIVE TO DESICCATION 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 76/138 (55%), Positives = 90/138 (65%)

Query:     9 EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
             EKE+YFF+PRDRKY NG+RPNR AG GYWKATG DK I  +G  VG KK LVFY GK PK
Sbjct:    84 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITADGRRVGIKKALVFYAGKAPK 143

Query:    69 GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDKSLKSLHRTEDRAS 128
             G KT WIMHEYR+   S    R+  S+  +LDDWVLCRIY K+ S    +++  T  +A 
Sbjct:   144 GTKTNWIMHEYRLIEHS----RSHGSS--KLDDWVLCRIY-KKTSGSQRQAV--TPVQAC 194

Query:   129 TEE--TNEPDCDKGSAVD 144
              EE  TN       S +D
Sbjct:   195 REEHSTNGSSSSSSSQLD 212

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	NAC089	NAC domain protein, IPR003441 (156 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	ABI4-1	SubName- Full=Abscisic acid insensitive 4-1; (412 aa)							•		0.700

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	6e-40

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  132 bits (334), Expect = 6e-40
 Identities = 49/74 (66%), Positives = 59/74 (79%), Gaps = 1/74 (1%)

Query: 8   KEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKH-NGAVVGFKKTLVFYEGKP 66
            ++E+YFF+PRDRKY NG+R NRA G GYWKATG DK +    G VVG KKTLVFY+G+ 
Sbjct: 55  GDREWYFFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRA 114

Query: 67  PKGDKTFWIMHEYR 80
           PKG+KT W+MHEYR
Sbjct: 115 PKGEKTDWVMHEYR 128

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	99.92

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=99.92  E-value=5.2e-25  Score=170.20  Aligned_cols=75  Identities=61%  Similarity=1.229  Sum_probs=58.9

Q ss_pred             CCCeEEEeeeccCCCCCCCCCeeecCCcEEEecccceeeec-CCeEEEEEEEEEeeeCCCCCCCccCeEEEEEEeC
Q 039886            8 KEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKH-NGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRVN   82 (192)
Q Consensus         8 ge~eWYFFs~r~~k~~~G~R~~R~t~~G~WkatG~~k~I~~-~g~~vG~KktLvFy~gr~p~g~kT~WvMhEYrl~   82 (192)
                      ++++||||+++.+++.+|.|++|++++|+||++|++++|.. ++.+||+|++|+||.++.+++.+|+|+||||+|.
T Consensus        54 ~~~~~yFF~~~~~~~~~~~r~~R~~~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   54 GDEEWYFFSPRKKKYPNGGRPNRVTGGGYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             -SSEEEEEEE----------S-EEETTEEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             CCceEEEEEecccccCCcccccccccceEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            57899999999999999999999999999999999999996 9999999999999999889999999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	192
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		2e-32
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		2e-32
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		5e-31

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 74/105 (70%), Gaps = 6/105 (5%)
Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
           EKE+YFF+PRDRKY NG+RPNR AG GYWKATG DK I   G  VG KK LVFY GK PK
Sbjct: 70  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 129
Query: 69  GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERS 113
           G KT WIMHEYR+   S      R +   +LDDWVLCRIY K+ S
Sbjct: 130 GTKTNWIMHEYRLIEPS------RRNGSTKLDDWVLCRIYKKQSS 168

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 74/105 (70%), Gaps = 6/105 (5%)
Query: 9   EKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPK 68
           EKE+YFF+PRDRKY NG+RPNR AG GYWKATG DK I   G  VG KK LVFY GK PK
Sbjct: 73  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 132
Query: 69  GDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERS 113
           G KT WIMHEYR+   S      R +   +LDDWVLCRIY K+ S
Sbjct: 133 GTKTNWIMHEYRLIEPS------RRNGSTKLDDWVLCRIYKKQSS 171

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 74/102 (72%), Gaps = 1/102 (0%)
Query: 10  KEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKG 69
           +E+YFFTPRDRKY NG+RPNRAAG GYWKATGADK +   G  +G KK LVFY GK P+G
Sbjct: 69  REWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG 128
Query: 70  DKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKE 111
            KT WIMHEYR+ +    +        +RLDDWVLCR+Y K+
Sbjct: 129 VKTDWIMHEYRLADAG-RAAAGAKKGSLRLDDWVLCRLYNKK 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	5e-56
1ut7_A	171	No apical meristem protein; transcription regulati	6e-55
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  174 bits (442), Expect = 5e-56
 Identities = 63/111 (56%), Positives = 76/111 (68%), Gaps = 1/111 (0%)

Query: 5   CAEKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEG 64
                +E+YFFTPRDRKY NG+RPNRAAG GYWKATGADK +   G  +G KK LVFY G
Sbjct: 64  ALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAG 123

Query: 65  KPPKGDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDK 115
           K P+G KT WIMHEYR+  D+  +        +RLDDWVLCR+Y K+   +
Sbjct: 124 KAPRGVKTDWIMHEYRL-ADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWE 173

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  171 bits (435), Expect = 6e-55
 Identities = 66/111 (59%), Positives = 74/111 (66%), Gaps = 6/111 (5%)

Query: 5   CAEKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEG 64
               EKE+YFF+PRDRKY NG+RPNR AG GYWKATG DK I   G  VG KK LVFY G
Sbjct: 66  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIG 125

Query: 65  KPPKGDKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKERSDK 115
           K PKG KT WIMHEYR+   S        +   +LDDWVLCRIY K+ S +
Sbjct: 126 KAPKGTKTNWIMHEYRLIEPSRR------NGSTKLDDWVLCRIYKKQSSAQ 170

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 34/197 (17%), Positives = 59/197 (29%), Gaps = 70/197 (35%)

Query: 36  YWKATGADK-------SI--------KHNGAVVGFKKTLVFYEGK--PPKGDKTFW---- 74
            WK    DK       S+        +       F +  VF      P       W    
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKM-----FDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 75  ------IMHEYR----VNNDSPPSTRTRLSTDMRLDDWVLCRIYYKER-SDKSLKSLHRT 123
                 ++++      V      ST       + +       IY + +   ++  +LHR+
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKEST-------ISIPS-----IYLELKVKLENEYALHRS 448

Query: 124 EDRASTEETNEP---DCDKGSAVDFSGYADTYSGYMQHLWQQQNA-----FSQIPSFKDV 175
                 +  N P   D D         Y  ++ G+  HL   ++      F  +  F D 
Sbjct: 449 ----IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--HLKNIEHPERMTLFRMV--FLDF 500

Query: 176 SFDSIVNLDEPFQHDGT 192
            F     L++  +HD T
Sbjct: 501 RF-----LEQKIRHDST 512

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=1.2e-39  Score=264.15  Aligned_cols=108  Identities=57%  Similarity=1.078  Sum_probs=85.9

Q ss_pred             cccCCCeEEEeeeccCCCCCCCCCeeecCCcEEEecccceeeecCCeEEEEEEEEEeeeCCCCCCCccCeEEEEEEeCCC
Q 039886            5 CAEKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRVNND   84 (192)
Q Consensus         5 ~~~ge~eWYFFs~r~~k~~~G~R~~R~t~~G~WkatG~~k~I~~~g~~vG~KktLvFy~gr~p~g~kT~WvMhEYrl~~~   84 (192)
                      +..|+++|||||++++||++|.|+||+|++||||+||++++|..+|.+||+||+||||.|++|+|.||+|+||||+|...
T Consensus        64 ~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~  143 (174)
T 3ulx_A           64 ALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADA  143 (174)
T ss_dssp             CSSCSSEEEEEEECCC-----CCSCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSC
T ss_pred             hccCCceEEEEeccccccCCCCCceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCC
Confidence            45688999999999999999999999999999999999999998899999999999999999999999999999999987


Q ss_pred             CCCCccccCCCCCcCCcEEEEEEEEeCCC
Q 039886           85 SPPSTRTRLSTDMRLDDWVLCRIYYKERS  113 (192)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~VLCrIf~k~~~  113 (192)
                      ...... ...+++..++|||||||+|++.
T Consensus       144 ~~~~~~-~~~~~~~~~~wVlCrvf~K~~~  171 (174)
T 3ulx_A          144 GRAAAG-AKKGSLRLDDWVLCRLYNKKNE  171 (174)
T ss_dssp             C------------CCSSEEEEEEEESCC-
T ss_pred             CCcccc-cccCCCCCCCEEEEEEEEcCCC
Confidence            543211 1122346799999999999764

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=4.8e-39  Score=259.99  Aligned_cols=103  Identities=64%  Similarity=1.118  Sum_probs=81.5

Q ss_pred             ccCCCeEEEeeeccCCCCCCCCCeeecCCcEEEecccceeeecCCeEEEEEEEEEeeeCCCCCCCccCeEEEEEEeCCCC
Q 039886            6 AEKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRVNNDS   85 (192)
Q Consensus         6 ~~ge~eWYFFs~r~~k~~~G~R~~R~t~~G~WkatG~~k~I~~~g~~vG~KktLvFy~gr~p~g~kT~WvMhEYrl~~~~   85 (192)
                      ..|+++|||||++++||++|.|+||+|++||||+||++++|..++.+||+||+||||.|++|+|.||+|+||||+|....
T Consensus        67 ~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~  146 (171)
T 1ut7_A           67 LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPS  146 (171)
T ss_dssp             SSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC
T ss_pred             hcCCccEEEEeccccccCCCCcccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCc
Confidence            46899999999999999999999999999999999999999988899999999999999999999999999999999875


Q ss_pred             CCCccccCCCCCcCCcEEEEEEEEeCCCc
Q 039886           86 PPSTRTRLSTDMRLDDWVLCRIYYKERSD  114 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~VLCrIf~k~~~~  114 (192)
                      ..      .+....++|||||||+|+...
T Consensus       147 ~~------~~~~~~~~~VlCrv~~k~~~~  169 (171)
T 1ut7_A          147 RR------NGSTKLDDWVLCRIYKKQSSA  169 (171)
T ss_dssp             --------------CCEEEEEEEECC---
T ss_pred             cc------cCcccCCCEEEEEEEEcCCCC
Confidence            21      122357899999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	9e-40

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  131 bits (330), Expect = 9e-40
 Identities = 65/102 (63%), Positives = 72/102 (70%), Gaps = 6/102 (5%)

Query: 10  KEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKG 69
           KE+YFF+PRDRKY NG+RPNR AG GYWKATG DK I   G  VG KK LVFY GK PKG
Sbjct: 71  KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG 130

Query: 70  DKTFWIMHEYRVNNDSPPSTRTRLSTDMRLDDWVLCRIYYKE 111
            KT WIMHEYR+   S      R +   +LDDWVLCRIY K+
Sbjct: 131 TKTNWIMHEYRLIEPS------RRNGSTKLDDWVLCRIYKKQ 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.8e-34  Score=229.89  Aligned_cols=100  Identities=65%  Similarity=1.146  Sum_probs=80.2

Q ss_pred             ccCCCeEEEeeeccCCCCCCCCCeeecCCcEEEecccceeeecCCeEEEEEEEEEeeeCCCCCCCccCeEEEEEEeCCCC
Q 039886            6 AEKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKHNGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRVNNDS   85 (192)
Q Consensus         6 ~~ge~eWYFFs~r~~k~~~G~R~~R~t~~G~WkatG~~k~I~~~g~~vG~KktLvFy~gr~p~g~kT~WvMhEYrl~~~~   85 (192)
                      ..++++||||+++.+++++|.|.+|+|++|+||++|++++|..+|.+||+||+|+||+|+++++.+|+|+||||+|.+..
T Consensus        67 ~~~~~~wyFft~~~~k~~~g~r~~R~~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~  146 (166)
T d1ut7a_          67 LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPS  146 (166)
T ss_dssp             SSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC
T ss_pred             ccCcceEEEEeeeccccCCCCccccccCCCEecccCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcc
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CCCccccCCCCCcCCcEEEEEEEEeC
Q 039886           86 PPSTRTRLSTDMRLDDWVLCRIYYKE  111 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~VLCrIf~k~  111 (192)
                      ...      .....++|||||||+|+
T Consensus       147 ~~~------~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_         147 RRN------GSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             --------------CCEEEEEEEECC
T ss_pred             ccc------CccccCCEEEEEEEecC
Confidence            432      22356899999999884