Citrus Sinensis ID: 039899

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
Protein Sequence
LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGSEISKCFRYQKEDSAMAVTMPLFLRENEVVGYAMCCVFNVRKGSCGIKRLRSFPTHQLSCHKNASYMSSFIHFKEKFGQAGSDHLWLFYLSPKEGYSRKWNFKSPDFVLSFQSDSGPGLEVKCCGFHPVYRHEVVKCDHATNRWTRSIIDYNLNGNLCTRFIDHLCELCQNQVKLNNVWYRLDDYLDENQVEDFYQTTNQWTWFIDRLSEFCTDAKELLQA
Secondary Structure (PSIPRED)
cccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccEEEEcccccccccccHHHHHHHHHHcccccccccEEEcccccccccccccccccEEEEEcccccccccccEEEEEEEEEccccccccccccccccEEEEEcccccccEEEEEcccccccccccEEEEEEEcccccccccccccccEEEEEEEccccccEEEEEEEEEEEEccccccccccccccccccccccccccccEEEEccHHHHccccEEEEEEEccccccccccccccEEEEccEEEEccccHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccEEccccccccHHHccccHHcHHcccEEEccccccEEccccHHHHHcccEEEcccccHHcccccccccccEEEcccccHHccccccHHHHHHHcHHHHHHHHcccEEcccccccHHHcccccccEEEEEcccccccccccEEEEEEEEEccccccccccccEEEEEEEEccccccEEEcccccccccccccccEEEEEEEccccccccEEEEEEEEEEEEEEccccccEEEEEcEEEEEEcccccccccccccccccEEcccccccccEEEEHHHcccccccccccccEEEccccccHccccccccccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
lpsllglcsltkldisdcnlgegaipsdigniCSLKelylsknrffslpASINLLSKLWIIELEECqrlqslpqlpsnieqvqvngcasLGTLSHALKLCKSidvevskpiphlsivvpgseiskcfryqkedsamavtMPLFLRENEVVGYAMCCVFnvrkgscgikrlrsfpthqlschknasYMSSFIHFKEkfgqagsdhlwlfylspkegysrkwnfkspdfvlsfqsdsgpglevkccgfhpvyrhevvkcdhatnrwTRSIIDYNLNGNLCTRFIDHLCELCQNQVKLNNVWYRlddyldenqvedfYQTTNQWTWFIDRLSEFCTDAKELLQA
Flexible Loop (DISEMBL)
LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIphlsivvpgseiSKCFRYQKEDSAMAVTMPLFLRENEVVGYAMCCVFNVRKGSCGIKRLRSFPTHQLSCHKNASYMSSFIHFKEKFGQAGSDHLWLFYLSPKEGYSRKWNFKSPDFVLSFQSDSGPGLEVKCCGFHPVYRHEVVkcdhatnrwTRSIIDYNLNGNLCTRFIDHLCELCQNQVKLNNVWYRLDDYLDENQVEDFYQTTNQWTWFIDRLSEFCTDAKELLQA
Low Complexity Region (SEG)
LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGSEISKCFRYQKEDSAMAVTMPLFLRENEVVGYAMCCVFNVRKGSCGIKRLRSFPTHQLSCHKNASYMSSFIHFKEKFGQAGSDHLWLFYLSPKEGYSRKWNFKSPDFVLSFQSDSGPGLEVKCCGFHPVYRHEVVKCDHATNRWTRSIIDYNLNGNLCTRFIDHLCELCQNQVKLNNVWYRLDDYLDENQVEDFYQTTNQWTWFIDRLSEFCTDAKELLQA
Disordered region (IsUnstruct)
***LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGSEISKCFRYQKEDSAMAVTMPLFLRENEVVGYAMCCVFNVRKGSCGIKRLRSFPTHQLSCHKNASYMSSFIHFKEKFGQAGSDHLWLFYLSPKEGYSRKWNFKSPDFVLSFQSDSGPGLEVKCCGFHPVYRHEVVKCDHATNRWTRSIIDYNLNGNLCTRFIDHLCELCQNQVKLNNVWYRLDDYLDENQVEDFYQTTNQWTWFIDRLSEFCTD*******
Disordered Region (DISOPRED)
LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGSEISKCFRYQKEDSAMAVTMPLFLRENEVVGYAMCCVFNVRKGSCGIKRLRSFPTHQLSCHKNASYMSSFIHFKEKFGQAGSDHLWLFYLSPKEGYSRKWNFKSPDFVLSFQSDSGPGLEVKCCGFHPVYRH****************************************************YL***QVEDFYQTTNQWTWFIDRLSEFCTDAKEL***
Disordered Region (DISEMBL)
LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGSEISKCFRYQKEDSAMAVTMPLFLRENEVVGYAMCCVFNVRKGSCGIKRLRSFPTHQLSCHKNASYMSSFIHFKEKFGQAGSDHLWLFYLSPKEGYSRKWNFKSPDFVLSFQSDSGPGLEVKCCGFHPVYRHEVVKCDHATNRWTRSIIDYNLNGNLCTRFIDHLCELCQNQVKLNNVWYRLDDYLDENQVEDFYQTTNQWTWFIDRLSEFCTDAKELLQA
Disordered Region (DISPRO)
**SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGSEISKCFRYQKEDSAMAVTMPLFLRENEVVGYAMCCVFNVRKGSCGIKRLRSFPTHQLSCHKNASYMSSFIHFKEKFGQAGSDHLWLFYLSPKEGYSRKWNFKSPDFVLSFQSDSGPGLEVKCCGFHPVYRHEVVKCDHATNRWTRSIIDYNLNGNLCTRFIDHLCELCQNQVKLNNVWYRLDDYLDENQVEDFYQTTNQWTWFIDRLSEFCTDAKELLQA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGSEISKCFRYQKEDSAMAVTMPLFLRENEVVGYAMCCVFNVRKGSCGIKRLRSFPTHQLSCHKNASYMSSFIHFKEKFGQAGSDHLWLFYLSPKEGYSRKWNFKSPDFVLSFQSDSGPGLEVKCCGFHPVYRHEVVKCDHATNRWTRSIIDYNLNGNLCTRFIDHLCELCQNQVKLNNVWYRLDDYLDENQVEDFYQTTNQWTWFIDRLSEFCTDAKELLQA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	341	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.246	0.073	0.452	5e-13
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.243	0.081	0.355	5e-05
Q1ZXD6	2800	Probable serine/threonine	yes	no	0.175	0.021	0.476	8e-05
Q9ERV7	915	p53-induced protein with	yes	no	0.178	0.066	0.484	0.0003
P0CB16	1201	Putative disease resistan	no	no	0.269	0.076	0.336	0.0004
Q9FXF2	1021	Probable LRR receptor-lik	no	no	0.240	0.080	0.333	0.0008

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 57/84 (67%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWII 61
           P   GL SL  L++S CNL +G +P +IG++ SLK+L LS+N F  LP+SI  L  L  +
Sbjct: 827 PVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSL 886

Query: 62  ELEECQRLQSLPQLPSNIEQVQVN 85
           +L++CQRL  LP+LP  + ++ V+
Sbjct: 887 DLKDCQRLTQLPELPPELNELHVD 910

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           LPS  G+ SL KL + + +L +  +P+D G + +L  + LS  +   LPASI  L  L  
Sbjct: 375 LPSASGMSSLQKLTVDNSSLAK--LPADFGALGNLAHVSLSNTKLRDLPASIGNLFTLKT 432

Query: 61  IELEECQRLQSLP----QLPSNIEQVQVNG 86
           + L++  +L SLP    QL S ++++ +NG
Sbjct: 433 LSLQDNPKLGSLPASFGQL-SGLQELTLNG 461

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q1ZXD6|ROCO5_DICDI Probable serine/threonine-protein kinase roco5 OS=Dictyostelium discoideum GN=roco5 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 11   TKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQ 70
            TKLD+SDC  G  A+P +IG+I SL EL L+ NR   LP  I  LS L  + L     ++
Sbjct: 1132 TKLDLSDC--GLSALPIEIGSISSLIELDLTNNRIKDLPPQIGKLSSLQTLNLSN-NAIE 1188

Query: 71   SLP 73
            SLP
Sbjct: 1189 SLP 1191

May act as a serine/threonine-protein kinase and guanine-nucleotide releasing factor.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ERV7|PIDD_MOUSE p53-induced protein with a death domain OS=Mus musculus GN=Pidd PE=1 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 3/64 (4%)

Query: 1   LPSLLG-LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLW 59
           LP  LG L +L +LD+S+  L    IPS+IGN+ SL EL L+ NR  SLPAS+  L  L 
Sbjct: 191 LPLTLGSLSTLQRLDLSENLLD--TIPSEIGNLRSLSELNLASNRLQSLPASLAGLRSLR 248

Query: 60  IIEL 63
           ++ L
Sbjct: 249 LLVL 252

Promotes apoptosis downstream of the tumor suppressor as component of the DNA damage/stress response pathway that connects p53/TP53 to apoptosis. Associates with NEMO/IKBKG and RIP1 and enhances sumoylation and ubiquitination of NEMO/IKBKG which is important for activation of the transcription factor NF-kappa-B. Associates with CASP2/caspase-2 and CRADD/RAIDD, and induces activation of CASP2 which an important regulator in apoptotic pathways.

Mus musculus (taxid: 10090)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           LPS+  L  L   D+S C +    I    G +  L E+ LS+     LP  I+ LS L  
Sbjct: 718 LPSIEKLTHLEVFDVSGC-IKLKNINGSFGEMSYLHEVNLSETNLSELPDKISELSNLKE 776

Query: 61  IELEECQRLQSLPQLP--SNIEQVQVNGCASLGTL 93
           + + +C +L++LP L   +N+E   V+GC  L T+
Sbjct: 777 LIIRKCSKLKTLPNLEKLTNLEIFDVSGCTELETI 811

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FXF2|RKF1_ARATH Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLW 59
           +P   G  SLT LD+ + N   G IP ++GN+  LK+L LS N+   +LPAS+  L  + 
Sbjct: 162 IPKEFGNSSLTYLDL-ESNAFSGTIPQELGNLVHLKKLLLSSNKLTGTLPASLARLQNMT 220

Query: 60  IIELEECQRLQSLPQLPSNIEQVQ 83
              + + Q   ++P    N +Q++
Sbjct: 221 DFRINDLQLSGTIPSYIQNWKQLE 244

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.721	0.204	0.332	2e-30
224146780	540	predicted protein [Populus trichocarpa]	0.686	0.433	0.336	4e-27
224114331	1119	tir-nbs-lrr resistance protein [Populus	0.736	0.224	0.330	4e-25
224120770	1120	tir-nbs-lrr resistance protein [Populus	0.665	0.202	0.363	5e-25
224108373	1279	tir-nbs-lrr resistance protein [Populus	0.771	0.205	0.325	9e-25
399920225	1076	TIR-NBS-LRR [Rosa rugosa]	0.777	0.246	0.324	1e-24
359496026	1250	PREDICTED: TMV resistance protein N-like	0.739	0.201	0.334	2e-24
296090591	771	unnamed protein product [Vitis vinifera]	0.739	0.326	0.338	2e-24
224114311	1144	tir-nbs-lrr resistance protein [Populus	0.636	0.189	0.348	5e-24
359493273	1233	PREDICTED: TMV resistance protein N-like	0.709	0.196	0.318	6e-24

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 149/292 (51%), Gaps = 46/292 (15%)

Query: 11   TKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQ 70
            T+L +S+CNLGEGA+P+DIG + SL++L LS+N+F SLP SI+ LS L  + +E+C+ LQ
Sbjct: 882  TRLGLSNCNLGEGAVPNDIGYLSSLRQLNLSRNKFVSLPTSIDQLSGLQFLRMEDCKMLQ 941

Query: 71   SLPQLPSNIEQVQVNGCASLGTLSHALKLCK-------------------------SIDV 105
            SLP+LPSN+E+ +VNGC SL  +  + KLC+                         ++  
Sbjct: 942  SLPELPSNLEEFRVNGCTSLEKMQFSRKLCQLNYLRYLFINCWRLSESDCWNNMFPTLLR 1001

Query: 106  EVSKPIPHL----SIVVPGSEISKCFRYQKEDSAMAVTMPLFLREN-EVVGYAMCCVFNV 160
            +  +  P+L    S+++PGSEI   F +Q E S+++V  P    EN E +GYA+C     
Sbjct: 1002 KCFQGPPNLIESFSVIIPGSEIPTWFSHQSEGSSVSVQTPPHSHENDEWLGYAVCASLGY 1061

Query: 161  RKGSCGIKRLRSFPTHQLSCHKNA-SYMSSFIHFKEKFGQAGSDHLWLFYLSPKEGYSRK 219
                  + R        + C  N     S  I+ + K  +  SDHLW  Y   +      
Sbjct: 1062 PDFPPNVFR------SPMQCFFNGDGNESESIYVRLKPCEILSDHLWFLYFPSR------ 1109

Query: 220  WNFKSPDFVLSFQ-SDSGPGLEVKCCGFHPVYRHEVVKCDHATNRWTRSIID 270
              FK  D  + F+  D+    +V  CG   VY+ +V + +  TN +  S  +
Sbjct: 1110 --FKRFDRHVRFRFEDNCSQTKVIKCGVRLVYQQDVEELNRMTNLYENSTFE 1159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146780|ref|XP_002336335.1| predicted protein [Populus trichocarpa] gi|222834747|gb|EEE73210.1| predicted protein [Populus trichocarpa]

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 144/285 (50%), Gaps = 51/285 (17%)

Query: 11  TKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQ 70
           T+L +S+CNLGEGA+P+DIG + SL++L LS+N+F SLP SI+ LS L  + +E+C+ LQ
Sbjct: 209 TRLGLSNCNLGEGAVPNDIGYLSSLRQLNLSRNKFVSLPTSIDQLSGLKFLYMEDCKMLQ 268

Query: 71  SLPQLPSNIEQVQVNGCASLGTLSHA--------LKLC-----------------KSIDV 105
           SLPQLP N+E ++VNGC SL  +  +        L  C                  ++  
Sbjct: 269 SLPQLPPNLELLRVNGCTSLEKMQFSSNPYKFNCLSFCFINCWRLSESDCWNNMFHTLLR 328

Query: 106 EVSKPIPHL----SIVVPGSEISKCFRYQKEDSAMAV-TMPLFLRENEVVGYAMCCVFNV 160
           +  +  P+L    S+ +PGSEI   F +Q E S+++V T P  L  +E +GYA+C   ++
Sbjct: 329 KCFQGPPNLIEVFSVFIPGSEIPTWFSHQSEGSSVSVQTPPHSLENDECLGYAVCA--SL 386

Query: 161 RKGSCGIKRLRS---FPTHQLSCHKNA-------SYMSSFIHFKEKFGQAGSDHLWLFYL 210
               C    L +        +SC  N        SY    I  + K     SDHLW  + 
Sbjct: 387 EYDGCASSELLTDYWVSGVPISCFFNGVNYGSVMSYFHRGIEMQWKRDNIPSDHLWYLFF 446

Query: 211 SPKEGYSRKWNFKSPDFVLSFQSDS-GPGLEVKCCGFHPVYRHEV 254
             +        FK  D  +S + ++  P ++V  CG  PVY  +V
Sbjct: 447 PSR--------FKIFDRHVSLRFETYRPQIKVIKCGVRPVYHQDV 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114331|ref|XP_002332400.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222832723|gb|EEE71200.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/312 (33%), Positives = 148/312 (47%), Gaps = 61/312 (19%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           LPSL GLCSL  LD+  CNL EGA+P DIG + SLK L LS+N F SLP SIN LS L +
Sbjct: 677 LPSLSGLCSLEVLDLCACNLREGALPEDIGCLSSLKSLDLSRNNFVSLPRSINQLSGLEM 736

Query: 61  IELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVE-------------- 106
           + LE+C  L+SLP++PS ++ + +NGC  L  +    +L  S   E              
Sbjct: 737 LALEDCTMLESLPEVPSKVQTLNLNGCIRLKEIPDPTELSSSKRSEFICLNCWELYNHNG 796

Query: 107 ---------------VSKPIPHLSIVVPGSEISKCFRYQKEDSAMAVTMPLFLRENEVVG 151
                          +S P P   I +PG+EI   F +Q   S+++V +P +      +G
Sbjct: 797 EDSMGLTMLERYLEGLSNPRPGFGIAIPGNEIPGWFNHQSMGSSISVQVPSW-----SMG 851

Query: 152 YAMCCVFNVRKGSCGIKRLRSFPTHQLSCHKNASYMSSF---IHFKEKFGQAGSDHLWLF 208
           +  C  F+    S         P+  L CH  A+   ++   +     + Q  SDH+WLF
Sbjct: 852 FVACVAFSANGES---------PS--LFCHFKANGRENYPSPMCISCNYIQVLSDHIWLF 900

Query: 209 YLSPKEGYS-RKWNFKS-PDFVLSFQSDSGPGLEVKCCGF----------HPVYRHEVVK 256
           YLS       ++W  +S  +  LSF S   PG++VK CG            P   H +V 
Sbjct: 901 YLSFDHLKELKEWKHESYSNIELSFHSFQ-PGVKVKNCGVCLLSSVYITPQPSSAHFIVT 959

Query: 257 CDHATNRWTRSI 268
              A + +  S+
Sbjct: 960 SKEAASSFRASL 971

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120770|ref|XP_002330947.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222873141|gb|EEF10272.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 103/283 (36%), Positives = 140/283 (49%), Gaps = 56/283 (19%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWII 61
           PSL GLCSL  L +  CNL EGA+P DIG + SL+ L LS+N F SLP SIN L +L ++
Sbjct: 672 PSLSGLCSLEVLGLCACNLREGALPEDIGCLSSLRSLDLSQNNFVSLPKSINQLFELEML 731

Query: 62  ELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVE--------------- 106
            LE+C  L+SLP++PS ++ V +NGC SL T+   + L  S   E               
Sbjct: 732 VLEDCTMLESLPKVPSKVQTVCLNGCISLKTIPDPINLSSSKISEFVCLNCWELYNHYGQ 791

Query: 107 --------------VSKPIPHLSIVVPGSEISKCFRYQKEDSAMAVTMPLFLRENEVVGY 152
                         +S P P   I +PG+EI   F +Q + S+++V +P +      +G+
Sbjct: 792 DSMGLTLLERYFQGLSNPRPGFGIAIPGNEIPGWFNHQSKGSSISVQVPSW-----SMGF 846

Query: 153 AMCCVFNVRKGSCGIKRLRSFPTHQLSCHKNA----SYMSSFIHFKEKFGQAGSDHLWLF 208
             C  F V   S             L CH  A    +Y SS +       Q  SDH+WLF
Sbjct: 847 VACVAFGVNGES-----------PSLFCHFKANGRENYPSSPMCISCNSIQVLSDHIWLF 895

Query: 209 YLS---PKEGYSRKWNFKS-PDFVLSFQSDSGPGLEVKCCGFH 247
           YLS    KE   ++W   S  +  LSF S S PG++VK CG  
Sbjct: 896 YLSFDYLKE--LQEWQHGSFSNIELSFHS-SQPGVKVKNCGVR 935

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108373|ref|XP_002333401.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222836441|gb|EEE74848.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 157/341 (46%), Gaps = 78/341 (22%)

Query: 1    LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
            LPSL GLCSL  L +  CNL EGA+P DIG + SL+ L LS+N F SLP SIN LS+L +
Sbjct: 840  LPSLSGLCSLEVLGLRSCNLREGALPEDIGWLSSLRSLDLSQNNFVSLPKSINRLSELEM 899

Query: 61   IELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVE-------------- 106
            + LE+C  L+SLP++PS ++ V +NGC SL T+   +KL  S   E              
Sbjct: 900  LVLEDCTMLESLPEVPSKVQTVYLNGCISLKTIPDPIKLSSSKRSEFICLNCWELYNHNG 959

Query: 107  ---------------VSKPIPHLSIVVPGSEISKCFRYQKEDSAMAVTMPLFLRENEVVG 151
                           +S P     I VPG+EI   F +Q + S++ V +P +      +G
Sbjct: 960  QESMGLFMLERYLQGLSNPRTRFGIAVPGNEIPGWFNHQSKGSSIRVEVPSW-----SMG 1014

Query: 152  YAMCCVFNVRKGSCGIKRLRSFPTHQLSCHKNASYMSSF---IHFKEKFGQAGSDHLWLF 208
            +  C  F+    S         P+  L CH  A+   ++   +       Q  SDH+WLF
Sbjct: 1015 FVACVAFSSNGQS---------PS--LFCHFKANGRENYPSPMCISCNSIQVLSDHIWLF 1063

Query: 209  YLS---PKEGYSRKWNFKS-PDFVLSFQSDSGPGLEVKCCGF----------HPVYRHEV 254
            YLS    KE   ++W   S  +  LSF S S  G++VK CG            P   H +
Sbjct: 1064 YLSFDYLKE--LQEWQHGSFSNIELSFHS-SRTGVKVKNCGVCLLSSVYITPRPSSAHFI 1120

Query: 255  VKCDHATN-------------RWTRSIIDYNLNGNLCTRFI 282
            V    A +             +W  ++       +L +RFI
Sbjct: 1121 VTSKEAASSYKASLAFSSSYHQWMANVFPVTRVADLASRFI 1161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|399920225|gb|AFP55572.1| TIR-NBS-LRR [Rosa rugosa]

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 140/290 (48%), Gaps = 25/290 (8%)

Query: 1    LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
            L SL    SLT+L ++DCNL EG IP+DIG++ SL++L L  N F SLPASI+LLSKL +
Sbjct: 791  LASLKQFSSLTELKLNDCNLCEGEIPNDIGSLSSLRKLELRGNNFVSLPASIHLLSKLEV 850

Query: 61   IELEECQRLQSLPQLP-SNIEQVQVNGCASLGTLSHALKLCKSIDVEVS----------- 108
            I +E C RLQ LP+LP S+   V+ + C SL        LC+  + E++           
Sbjct: 851  ITVENCTRLQQLPELPASDYILVKTDNCTSLQVFPDPPDLCRIGNFELTCMNCSSLETHR 910

Query: 109  KPIPHLSIVVPGSEISKCFRYQKEDSAMAVTMPLFLRENEVVGYAMCCVFNVRKGSCGIK 168
            + +  L  V+PG EI + F  Q    ++   +P     ++ +G+A+C +   +       
Sbjct: 911  RSLECLEFVIPGREIPEWFNNQSVGDSVTEKLPSDACNSKCIGFAVCALIVPQDNPSAFP 970

Query: 169  R--LRSFPTHQLSCHKNASYMSSFIHFKEKFGQAGSDHLWLFYLSPKEGYSRKWNFKSP- 225
               L    T ++ CH N   + S      +  Q  SDHLWLF L      S  W  +   
Sbjct: 971  ENPLLDPDTCRIGCHWNNYGVYSLCQ-NFRVRQFVSDHLWLFVLR-----SLFWKLEKRL 1024

Query: 226  --DFVLSFQSDSGPG--LEVKCCGFHPVYRHEVVKCDHATNRWTRSIIDY 271
              +FV       G    ++VK CG   +Y ++  +     N+   SI  Y
Sbjct: 1025 EVNFVFKITRAVGNNRCIKVKKCGVRALYEYDKEELISKMNQSKSSISLY 1074

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/275 (33%), Positives = 132/275 (48%), Gaps = 23/275 (8%)

Query: 1    LPSLLGLCSLTKLDISDCNLGEGAIPSDIGN-ICSLKELYLSKNRFFSLPASINLLSKLW 59
            LPSL GLCSL +L++SDCN+ EGA+P+D+G  + SL+ L L  N F +LP  I+ L  L 
Sbjct: 877  LPSLSGLCSLKQLNLSDCNIKEGALPNDLGGYLSSLEYLNLKGNDFVTLPTGISKLCNLK 936

Query: 60   IIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLC--------------KSIDV 105
             + L  C+RLQ LP LP NI ++    C SL TLS     C              ++   
Sbjct: 937  ALYLGCCKRLQELPMLPPNINRINAQNCTSLETLSGLSAPCWLAFTNSFRQNWGQETYLA 996

Query: 106  EVSKPIPHLSIVVPGSEISKCFRYQKEDSAMAVTMPLFLRENEVVGYAMCCVFNVRK-GS 164
            EVS+ IP  +  +PG+ I + FR Q    ++ V +P     +  +G+AMC VF +++   
Sbjct: 997  EVSR-IPKFNTYLPGNGIPEWFRNQCMGDSIMVQLPSHWYNDNFLGFAMCIVFALKEPNQ 1055

Query: 165  CGIKRLR-SFPTHQLSCHKNASYMSSFI--HFKEKFGQAGSDHLWLFYLS--PKEGYSRK 219
            C    +     +  L       ++   +     +  G   SDHLWL Y    P +     
Sbjct: 1056 CSRGAMLCELESSDLDPSNLGCFLDHIVWEGHSDGDGFVESDHLWLGYHPNFPIKKDDMD 1115

Query: 220  WNFKSPDFVLSFQSDSGPGLEVKCCGFHPVYRHEV 254
            W  K      SF     P  EVK CGF  VY  ++
Sbjct: 1116 WPNKLSHIKASFVIAGIPH-EVKWCGFRLVYMEDL 1149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090591|emb|CBI40960.3| unnamed protein product [Vitis vinifera]

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 132/275 (48%), Gaps = 23/275 (8%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGN-ICSLKELYLSKNRFFSLPASINLLSKLW 59
           LPSL GLCSL +L++SDCN+ EGA+P+D+G  + SL+ L L  N F +LP  I+ L  L 
Sbjct: 383 LPSLSGLCSLKQLNLSDCNIKEGALPNDLGGYLSSLEYLNLKGNDFVTLPTGISKLCNLK 442

Query: 60  IIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLC--------------KSIDV 105
            + L  C+RLQ LP LP NI ++    C SL TLS     C              ++   
Sbjct: 443 ALYLGCCKRLQELPMLPPNINRINAQNCTSLETLSGLSAPCWLAFTNSFRQNWGQETYLA 502

Query: 106 EVSKPIPHLSIVVPGSEISKCFRYQKEDSAMAVTMPLFLRENEVVGYAMCCVFNVRK-GS 164
           EVS+ IP  +  +PG+ I + FR Q    ++ V +P     +  +G+AMC VF +++   
Sbjct: 503 EVSR-IPKFNTYLPGNGIPEWFRNQCMGDSIMVQLPSHWYNDNFLGFAMCIVFALKEPNQ 561

Query: 165 CGI-KRLRSFPTHQLSCHKNASYMSSFI--HFKEKFGQAGSDHLWLFYLS--PKEGYSRK 219
           C     L    +  L       ++   +     +  G   SDHLWL Y    P +     
Sbjct: 562 CSRGAMLCELESSDLDPSNLGCFLDHIVWEGHSDGDGFVESDHLWLGYHPNFPIKKDDMD 621

Query: 220 WNFKSPDFVLSFQSDSGPGLEVKCCGFHPVYRHEV 254
           W  K      SF     P  EVK CGF  VY  ++
Sbjct: 622 WPNKLSHIKASFVIAGIPH-EVKWCGFRLVYMEDL 655

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114311|ref|XP_002332395.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222832718|gb|EEE71195.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 101/290 (34%), Positives = 137/290 (47%), Gaps = 73/290 (25%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           LPSL GLCSL  LD+  CNL EGA+P DIG + SL+ L LS+N F SLP SIN L +L  
Sbjct: 678 LPSLSGLCSLEVLDLCACNLREGALPEDIGFLSSLRSLDLSQNNFVSLPQSINQLFELER 737

Query: 61  IELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVE-------------- 106
           + LE+C  L+SLP++PS ++ V +NGC SL  +   +KL  S   E              
Sbjct: 738 LVLEDCSMLESLPEVPSKVQTVNLNGCISLKEIPDPIKLSSSKISEFLCLNCWELYEHNG 797

Query: 107 ---------------VSKPIPHLSIVVPGSEISKCFRYQKEDSAMAVTMPLFLRENEVVG 151
                          +S P P   IVVPG+EI   F ++ + S+++V +P +      +G
Sbjct: 798 QDSMGLTMLERYLKGLSNPRPGFGIVVPGNEIPGWFNHRSKGSSISVQVPSW-----SMG 852

Query: 152 YAMCCVFNVRKGSCGIKRLRSFPTHQLSCHKNASYMSSFIHFK----EKFG--------- 198
           +  C  F+                       N    S F HFK    E +          
Sbjct: 853 FVACVAFSA----------------------NGESPSLFCHFKTNGRENYPSPMCISCNS 890

Query: 199 -QAGSDHLWLFYLSPKEGYS-RKWNFKS-PDFVLSFQSDSGPGLEVKCCG 245
            Q  SDH+WLFYLS       ++W   S  +  LSF S S P ++VK CG
Sbjct: 891 IQVLSDHIWLFYLSFDYLIELKEWQHGSFSNIELSFHS-SQPRVKVKNCG 939

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493273|ref|XP_002272034.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 138/311 (44%), Gaps = 69/311 (22%)

Query: 1    LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
            LPSL GLCSL +LDISDCNL EGA+P DI N+ SL+ L LS+N FFSLPA I+ LSKL  
Sbjct: 860  LPSLSGLCSLRELDISDCNLMEGAVPFDICNLSSLETLNLSRNNFFSLPAGISKLSKLRF 919

Query: 61   IELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCK------------------- 101
            + L  C+ L  +P+LPS+I +V    C+SL T+     +C                    
Sbjct: 920  LSLNHCKSLLQIPELPSSIIEVNAQYCSSLNTILTPSSVCNNQPVCRWLVFTLPNCFNLD 979

Query: 102  -----SIDVEVSKP---------------IPH--LSIVVPGSEISKCFRYQKEDSAMAVT 139
                 S D+ +  P               +P    SI +PGSEI      Q   S + + 
Sbjct: 980  AENPCSNDMAIISPRMQIVTNMLQKLQNFLPDFGFSIFLPGSEIPDWISNQNLGSEVTIE 1039

Query: 140  MPLFLRENEVVGYAMCCVF---NVRKGSCGIKRLRSFPTHQLSC--HKNASYMSSFIHFK 194
            +P    E+  +G+A+CCVF   ++    C         + QL C    + S+     H  
Sbjct: 1040 LPPHWFESNFLGFAVCCVFAFEDIAPNGC---------SSQLLCQLQSDESHFRGIGHIL 1090

Query: 195  EKFGQAG-------SDHLWLFYLSPKEGYSRKWNFKSPDFVLSFQSDSG-----PGLEVK 242
                  G       S H+WL Y  P+ G  R      P+     ++  G     P   V+
Sbjct: 1091 HSIDCEGNSEDRLKSHHMWLAY-KPR-GRLRISYGDCPNRWRHAKASFGFISCCPSNMVR 1148

Query: 243  CCGFHPVYRHE 253
             CG H +Y  +
Sbjct: 1149 KCGIHLIYAQD 1159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.246	0.073	0.452	4.4e-11
TAIR|locus:2206465	709	AT1G57650 [Arabidopsis thalian	0.398	0.191	0.346	1.4e-10
TAIR|locus:2122925	417	AT4G19470 [Arabidopsis thalian	0.240	0.196	0.411	2.8e-10
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.278	0.077	0.402	2.8e-10
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.258	0.072	0.377	4.9e-09
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.266	0.070	0.414	2e-08
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.225	0.061	0.405	1.9e-07
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.331	0.081	0.336	5.9e-07
TAIR|locus:2205804	1556	AT1G27180 [Arabidopsis thalian	0.331	0.072	0.336	6.8e-07
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.258	0.073	0.376	9.3e-07

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 185 (70.2 bits), Expect = 4.4e-11, P = 4.4e-11
 Identities = 38/84 (45%), Positives = 57/84 (67%)

Query:     2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWII 61
             P   GL SL  L++S CNL +G +P +IG++ SLK+L LS+N F  LP+SI  L  L  +
Sbjct:   827 PVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSL 886

Query:    62 ELEECQRLQSLPQLPSNIEQVQVN 85
             +L++CQRL  LP+LP  + ++ V+
Sbjct:   887 DLKDCQRLTQLPELPPELNELHVD 910

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2206465 AT1G57650 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 53/153 (34%), Positives = 79/153 (51%)

Query:     1 LPSLLGLCSLTKLDISDCN-LGEGAIPSDIGNICSLKELYLSK-NRFFSLPASINLLSKL 58
             LP+L    +L  L++  C+ L E  +PS IGN  SL +L L K +    LP SI  L+ L
Sbjct:   376 LPNLSMATNLKNLNLERCSSLVE--LPSSIGNATSLHDLRLFKCSSLVELPFSIGNLTNL 433

Query:    59 WIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTL-----SHALKL----CKSIDVEVSK 109
             W ++L EC  L SLPQLP +I  +    C SL  L     +  + L    C +++ E   
Sbjct:   434 WKLDLRECSSLVSLPQLPDSIMVLNARNCESLEKLDCSFYNPGILLNFVNCFNLNQEARD 493

Query:   110 PIPHLS----IVVPGSEISKCFRYQKEDSAMAV 138
              +   S    +V+PG E+  CF Y+   S+++V
Sbjct:   494 LLIETSTVNFVVLPGKEVPACFTYRSHGSSVSV 526

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

TAIR|locus:2122925 AT4G19470 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
 Identities = 35/85 (41%), Positives = 51/85 (60%)

Query:    15 ISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQ 74
             ++DCNL +   P +   + SL+ L LS+N   +LP SI  L  L  + L+ C+ L SLP 
Sbjct:    36 LTDCNLYK--FPDNFSCLSSLQSLCLSRNSIENLPGSIKKLHHLKSLYLKNCKNLISLPV 93

Query:    75 LPSNIEQVQVNGCASLGTLSHALKL 99
             LPSN + + V+GC SL T+S  + L
Sbjct:    94 LPSN-QYLDVHGCISLETVSKPMTL 117

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
 Identities = 39/97 (40%), Positives = 59/97 (60%)

Query:     1 LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
             +P  LG   LT L +S C+L +  +P +IG + SL+ L LS N   +LP S N L+ L  
Sbjct:   848 MPPTLGCSRLTDLYLSRCSLYK--LPDNIGGLSSLQSLCLSGNNIENLPESFNQLNNLKW 905

Query:    61 IELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHAL 97
              +L+ C+ L+SLP LP N++ +  + C SL TL++ L
Sbjct:   906 FDLKFCKMLKSLPVLPQNLQYLDAHECESLETLANPL 942

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
 Identities = 34/90 (37%), Positives = 57/90 (63%)

Query:    10 LTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRL 69
             L+ L +++CN+ +  +P    ++ SL+ L LS+N   +LP SI  L  L +++L+ C RL
Sbjct:   846 LSDLYLTNCNIDK--LPDKFSSLRSLRCLCLSRNNIETLPESIEKLYSLLLLDLKHCCRL 903

Query:    70 QSLPQLPSNIEQVQVNGCASLGTLSHALKL 99
             +SLP LPSN++ +  +GC SL  +S  L +
Sbjct:   904 KSLPLLPSNLQYLDAHGCGSLENVSKPLTI 933

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 39/94 (41%), Positives = 57/94 (60%)

Query:     2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWII 61
             P L     L  L +S+ N+ E  IP+ IGN+ +L EL LS N F  +PASI  L++L  +
Sbjct:   949 PPLSRFDDLRALSLSNMNMTE--IPNSIGNLWNLLELDLSGNNFEFIPASIKRLTRLNRL 1006

Query:    62 ELEECQRLQSLP-QLPSNIEQVQVNGCASLGTLS 94
              L  CQRLQ+LP +LP  +  + ++ C SL ++S
Sbjct:  1007 NLNNCQRLQALPDELPRGLLYIYIHSCTSLVSIS 1040

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 32/79 (40%), Positives = 47/79 (59%)

Query:    16 SDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL 75
             S+C+L E   P  I  + S++ L LS N F  LP SI  L  L  ++L+ C+ L S+P L
Sbjct:   856 SNCHLCEW--PRGIYGLSSVRRLSLSSNEFRILPRSIGYLYHLNWLDLKHCKNLVSVPML 913

Query:    76 PSNIEQVQVNGCASLGTLS 94
             P N++ +  +GC SL T+S
Sbjct:   914 PPNLQWLDAHGCISLETIS 932

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 5.9e-07, P = 5.9e-07
 Identities = 39/116 (33%), Positives = 60/116 (51%)

Query:     7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEEC 66
             L  L +LD     +  G IP D+  +  L +L L  N F SLP+S+  LS L  + L +C
Sbjct:  1061 LLKLEELDACSWRIS-GKIPDDLEKLSCLMKLNLGNNYFHSLPSSLVKLSNLQELSLRDC 1119

Query:    67 QRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGSE 122
             + L+ LP LP  +EQ+ +  C SL ++S   +L    D+ ++     + I  PG E
Sbjct:  1120 RELKRLPPLPCKLEQLNLANCFSLESVSDLSELTILTDLNLTNCAKVVDI--PGLE 1173

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 6.8e-07, P = 6.8e-07
 Identities = 39/116 (33%), Positives = 60/116 (51%)

Query:     7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEEC 66
             L  L +LD     +  G IP D+  +  L +L L  N F SLP+S+  LS L  + L +C
Sbjct:  1235 LLKLEELDACSWRIS-GKIPDDLEKLSCLMKLNLGNNYFHSLPSSLVKLSNLQELSLRDC 1293

Query:    67 QRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGSE 122
             + L+ LP LP  +EQ+ +  C SL ++S   +L    D+ ++     + I  PG E
Sbjct:  1294 RELKRLPPLPCKLEQLNLANCFSLESVSDLSELTILTDLNLTNCAKVVDI--PGLE 1347

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
 Identities = 35/93 (37%), Positives = 58/93 (62%)

Query:     9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFS-LPASINLLSKLWIIELEECQ 67
             ++++L+I    L E AI  D+  I S++ L L+KN   S LP  +N  S+L  + L+ C+
Sbjct:   819 NMSRLEI--LLLDETAI-KDMPKILSVRRLCLNKNEKISRLPDLLNKFSQLQWLHLKYCK 875

Query:    68 RLQSLPQLPSNIEQVQVNGCASLGTLSHALKLC 100
              L  +PQLP N++ + V+GC+SL T++  L +C
Sbjct:   876 NLTHVPQLPPNLQYLNVHGCSSLKTVAKPL-VC 907

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01250006 tir-nbs-lrr resistance protein (1203 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	341
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-05
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.001

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 1   LPSLLGLCSLTKLDISDC-NLGEGAIPSDIGNICSLKELYLSK-NRFFSLPASINLLSKL 58
           +P L    +L  L +SDC +L E  +PS I  +  L++L +S+      LP  INL S L
Sbjct: 650 IPDLSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEILPTGINLKS-L 706

Query: 59  WIIELEECQRLQSLPQLPSNIEQVQVNGCA 88
           + + L  C RL+S P + +NI  + ++  A
Sbjct: 707 YRLNLSGCSRLKSFPDISTNISWLDLDETA 736

syringae 6; Provisional. Length = 1153

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 35  LKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQV--NGCASLGT 92
           L+EL +S N+  SLPA  + L KLW        +L SLP LPS ++++ V  N  ASL T
Sbjct: 304 LQELSVSDNQLASLPALPSELCKLWAYN----NQLTSLPTLPSGLQELSVSDNQLASLPT 359

Query: 93  LSHAL 97
           L   L
Sbjct: 360 LPSEL 364

Length = 788

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 10  LTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIEL 63
           L  +++S  ++  G IP  +G+I SL+ L LS N F  S+P S+  L+ L I+ L
Sbjct: 444 LQSINLSGNSI-RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKL 58
            L  L +L  LD+S  +L +  +P  + N+ +L  L LS N+   LP  I LLS L
Sbjct: 158 PLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSAL 211

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 9   SLTKLDISDC-NLGEGAIPSDIGNICSLKELYLSKNR-FFSLPASINLLSKLWIIELEEC 66
           SLT+L +SD  +L E  +PS I N+  L+ L +       +LP  INL S L  ++L  C
Sbjct: 779 SLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETLPTGINLES-LESLDLSGC 835

Query: 67  QRLQSLPQLPSNIEQVQVNGCA 88
            RL++ P + +NI  + ++   
Sbjct: 836 SRLRTFPDISTNISDLNLSRTG 857

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	341
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.89
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.84
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.75
PLN03150	623	hypothetical protein; Provisional	98.67
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.55
PLN03150	623	hypothetical protein; Provisional	98.54
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.51
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.42
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.33
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.33
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.25
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.22
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.22
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.15
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.14
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.08
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.03
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.98
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.97
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.81
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.53
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.5
PRK15386	426	type III secretion protein GogB; Provisional	97.45
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.39
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.25
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.24
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.18
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.05
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.03
PRK15386	426	type III secretion protein GogB; Provisional	96.88
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.8
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.76
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.61
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.38
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.32
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.96
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.71
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.65
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.58
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.46
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.11
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.11
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.56
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.1
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.63
smart00370	26	LRR Leucine-rich repeats, outliers.	93.63
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	93.6
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.03
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.7
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	92.46
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	90.7
KOG2982	418	consensus Uncharacterized conserved protein [Funct	88.91
KOG2123	388	consensus Uncharacterized conserved protein [Funct	87.37
KOG2982	418	consensus Uncharacterized conserved protein [Funct	86.6
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	85.97
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.55
smart00370	26	LRR Leucine-rich repeats, outliers.	85.55
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	82.36
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	80.38

>PLN03210 Resistant to P

Probab=99.86  E-value=1e-20  Score=208.38  Aligned_cols=249  Identities=17%  Similarity=0.250  Sum_probs=164.4

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccc--------------------cCCCCCcEEEccCCCCCCCChhccCCCCccEEE
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDI--------------------GNICSLKELYLSKNRFFSLPASINLLSKLWIIE   62 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i--------------------~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~   62 (341)
                      ++++|++|+.|+|++|... +.+|..+                    ...++|+.|+|++|.++.+|.++..+++|+.|+
T Consensus       797 si~~L~~L~~L~Ls~C~~L-~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~  875 (1153)
T PLN03210        797 SIQNLHKLEHLEIENCINL-ETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLD  875 (1153)
T ss_pred             hhhCCCCCCEEECCCCCCc-CeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEE
Confidence            4566777777777777554 4566433                    112457777888888899999999999999999


Q ss_pred             cCCccccccCCCCCc---cccccccccccccCcch--hhhH----------------------HHHhhchhccC--CCCc
Q 039899           63 LEECQRLQSLPQLPS---NIEQVQVNGCASLGTLS--HALK----------------------LCKSIDVEVSK--PIPH  113 (341)
Q Consensus        63 Ls~c~~l~~lP~lp~---sL~~L~~~~c~sL~~l~--~~p~----------------------~l~~~l~~l~l--~~n~  113 (341)
                      |++|+.+..+|..+.   +|+.|++.+|.+|+.++  ..|.                      +|.++-+...+  +...
T Consensus       876 L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~  955 (1153)
T PLN03210        876 MNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIF  955 (1153)
T ss_pred             CCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhhhcccccc
Confidence            999999998887544   55667889999998653  1111                      11111101111  1112


Q ss_pred             cccccCCCCccccchhccCCCeEE-EEcCCCCCCCCccceEEEEEEeccCCCcCccccCCCCceeeEEEEeeCCCceEEE
Q 039899          114 LSIVVPGSEISKCFRYQKEDSAMA-VTMPLFLRENEVVGYAMCCVFNVRKGSCGIKRLRSFPTHQLSCHKNASYMSSFIH  192 (341)
Q Consensus       114 ~~~~lPg~~iP~wf~~~~~g~si~-~~Lp~~~~~~~~~gf~~c~v~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  192 (341)
                      ...++||.++|.||.|+..|++++ +.+|+.|....+.||++|+|+++.....    ........+.|++....+..+..
T Consensus       956 ~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~----~~~~~~~~~~c~~~~~~~~~~~~ 1031 (1153)
T PLN03210        956 KQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFI----ISVSFDIQVCCRFIDRLGNHFDS 1031 (1153)
T ss_pred             eEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCcccc----CCCceeEEEEEEEECCCCCcccc
Confidence            235789999999999999999998 9999999877899999999998765311    11233467788887765554321


Q ss_pred             ee--e-cccCCCCCceEEEEeCCCcCCCCc----CCCCCCeEEEEEEeCCC-CCeEEeeeeEEEEEecCCcccc
Q 039899          193 FK--E-KFGQAGSDHLWLFYLSPKEGYSRK----WNFKSPDFVLSFQSDSG-PGLEVKCCGFHPVYRHEVVKCD  258 (341)
Q Consensus       193 ~~--~-~~~~~~sdHl~l~~~~~~~~l~~~----~~~~~~~v~~~F~~~~~-~~~~Vk~CGV~liy~~d~~~~~  258 (341)
                      ..  + .+.....+|+++|.....  +.+.    ....+.|+.++|+.... ..++||+|||+++|+.+..+..
T Consensus      1032 ~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~~~~ 1103 (1153)
T PLN03210       1032 PYQPHVFSVTKKGSHLVIFDCCFP--LNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSLNNT 1103 (1153)
T ss_pred             CCCceeEeeeccccceEEeccccc--ccccccchhccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCCcccC
Confidence            11  0 112245667776643322  1111    23356788888875432 3479999999999977666543

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.89  E-value=1.8e-09  Score=117.49  Aligned_cols=68  Identities=28%  Similarity=0.374  Sum_probs=31.0

Q ss_pred             CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCC
Q 039899            5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLP   73 (341)
Q Consensus         5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP   73 (341)
                      +++++|++|+|++|.+. +.+|..++++++|++|+|++|.+. .+|..++++++|+.|+|++|++.+.+|
T Consensus       161 ~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  229 (968)
T PLN00113        161 GSFSSLKVLDLGGNVLV-GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP  229 (968)
T ss_pred             hcCCCCCEEECccCccc-ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence            34444444444444444 344444444444444444444444 344444444444444444444444433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.84  E-value=4.9e-10  Score=97.02  Aligned_cols=67  Identities=24%  Similarity=0.397  Sum_probs=45.5

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQ   70 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~   70 (341)
                      |.+..|.+|+.|++++|++.+  +|.+|++|+.|+.|+++-|.+..+|..+|.++.|+.|+|.+|.+..
T Consensus        50 pnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e  116 (264)
T KOG0617|consen   50 PNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNE  116 (264)
T ss_pred             CcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccccc
Confidence            345566667777777777744  7777777777777777777777777777777777777777666543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.75  E-value=9.2e-09  Score=112.02  Aligned_cols=115  Identities=24%  Similarity=0.342  Sum_probs=84.4

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLPQL---PSN   78 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s   78 (341)
                      ....+++|+.|+|++|++. |.+|..++.+++|+.|+|++|.+. .+|..++++++|+.|+|++|.+.+.+|..   .++
T Consensus       470 ~~~~~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  548 (968)
T PLN00113        470 DSFGSKRLENLDLSRNQFS-GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV  548 (968)
T ss_pred             cccccccceEEECcCCccC-CccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCccc
Confidence            3334567778888888887 778888888888888888888887 78888888888888888888888877753   246


Q ss_pred             ccccccccccccCcchhhhHHHHh--hchhccCCCCccccccCCC
Q 039899           79 IEQVQVNGCASLGTLSHALKLCKS--IDVEVSKPIPHLSIVVPGS  121 (341)
Q Consensus        79 L~~L~~~~c~sL~~l~~~p~~l~~--~l~~l~l~~n~~~~~lPg~  121 (341)
                      |+.|+++++.-...   +|..+..  .++.+++++|.+.+.+|..
T Consensus       549 L~~L~Ls~N~l~~~---~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        549 LSQLDLSQNQLSGE---IPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             CCEEECCCCccccc---CChhHhcCcccCEEeccCCcceeeCCCc
Confidence            67777766643333   3444433  3778888888888888754

>PLN03150 hypothetical protein; Provisional

Probab=98.67  E-value=2.8e-08  Score=103.65  Aligned_cols=103  Identities=19%  Similarity=0.256  Sum_probs=75.8

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCCCC---Ccccccccc
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLPQL---PSNIEQVQV   84 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~~   84 (341)
                      .++.|+|++|.+. |.+|..++.|++|+.|+|++|.+. .+|..++.+++|+.|+|++|++.+.+|+.   .++|+.|++
T Consensus       419 ~v~~L~L~~n~L~-g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLR-GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCcc-ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            3778899999998 889999999999999999999988 88888999999999999999998888763   345666666


Q ss_pred             ccccccCcchhhhHHHHhh---chhccCCCCccc
Q 039899           85 NGCASLGTLSHALKLCKSI---DVEVSKPIPHLS  115 (341)
Q Consensus        85 ~~c~sL~~l~~~p~~l~~~---l~~l~l~~n~~~  115 (341)
                      +++.--.   .+|..+...   +..+++.+|...
T Consensus       498 s~N~l~g---~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        498 NGNSLSG---RVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             cCCcccc---cCChHHhhccccCceEEecCCccc
Confidence            6553211   345444332   334556666543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.55  E-value=4.3e-08  Score=70.64  Aligned_cols=59  Identities=32%  Similarity=0.486  Sum_probs=52.8

Q ss_pred             CCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccc
Q 039899            8 CSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQR   68 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~   68 (341)
                      ++|++|+|++|++.+  +|. .+..+++|+.|++++|.++.+|+ .+..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESE--ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            579999999999974  774 68999999999999999998875 789999999999999974

...

>PLN03150 hypothetical protein; Provisional

Probab=98.54  E-value=1.3e-07  Score=98.59  Aligned_cols=71  Identities=32%  Similarity=0.499  Sum_probs=59.6

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCCC
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLPQ   74 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~   74 (341)
                      ++..|++|+.|+|++|++. |.+|..++.+++|+.|+|++|.+. .+|..+++|++|+.|+|++|++.|.+|.
T Consensus       437 ~i~~L~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  508 (623)
T PLN03150        437 DISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA  508 (623)
T ss_pred             HHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence            4667788888888888887 888888888888888888888888 7888888888888888888888887775

>PLN03210 Resistant to P

Probab=98.51  E-value=2.7e-07  Score=102.54  Aligned_cols=87  Identities=28%  Similarity=0.499  Sum_probs=44.7

Q ss_pred             CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCC-CCCCChhccCCCCccEEEcCCccccccCCC--CCccccc
Q 039899            5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNR-FFSLPASINLLSKLWIIELEECQRLQSLPQ--LPSNIEQ   81 (341)
Q Consensus         5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~-~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~--lp~sL~~   81 (341)
                      ..+++|+.|+|++|+.. +.+| .++.+++|+.|+|++|. +..+|.+|++|.+|+.|++++|..++.+|.  -+.+|+.
T Consensus       631 ~~l~~Lk~L~Ls~~~~l-~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~  708 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNL-KEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR  708 (1153)
T ss_pred             ccCCCCCEEECCCCCCc-CcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence            34555555555555433 3344 25555555555555542 335555555555555555555555555553  1344555


Q ss_pred             cccccccccCcc
Q 039899           82 VQVNGCASLGTL   93 (341)
Q Consensus        82 L~~~~c~sL~~l   93 (341)
                      |++.+|..|+.+
T Consensus       709 L~Lsgc~~L~~~  720 (1153)
T PLN03210        709 LNLSGCSRLKSF  720 (1153)
T ss_pred             EeCCCCCCcccc
Confidence            555555444433

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.42  E-value=4e-08  Score=85.30  Aligned_cols=114  Identities=25%  Similarity=0.310  Sum_probs=81.1

Q ss_pred             CCCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCC---c
Q 039899            1 LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLP---S   77 (341)
Q Consensus         1 LPsl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp---~   77 (341)
                      +|-+..+..++.|.||+|.++-  +|+.|..|.+|+.|++++|.++++|.+|+.|++|+.|++.-|++. .+|.=.   +
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p  102 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP  102 (264)
T ss_pred             cccccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence            3556677888999999999974  999999999999999999999999999999999999999988764 344322   2


Q ss_pred             cccccccccccccCcchhhhHHHH--hhchhccCCCCccccccCC
Q 039899           78 NIEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVVPG  120 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~lPg  120 (341)
                      .|+.|++..- .|.. ..+|.+++  ..+..+.++.|.|.. +|+
T Consensus       103 ~levldltyn-nl~e-~~lpgnff~m~tlralyl~dndfe~-lp~  144 (264)
T KOG0617|consen  103 ALEVLDLTYN-NLNE-NSLPGNFFYMTTLRALYLGDNDFEI-LPP  144 (264)
T ss_pred             hhhhhhcccc-cccc-ccCCcchhHHHHHHHHHhcCCCccc-CCh
Confidence            3444444211 1110 02344442  336667777777764 443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.33  E-value=8.9e-08  Score=96.80  Aligned_cols=64  Identities=28%  Similarity=0.374  Sum_probs=39.6

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQR   68 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~   68 (341)
                      .+.+|.-|+.||||.|++.|  +|..+..-.++-.|+||.|+|.+||.+ +-+|+-|-+|+|++|++
T Consensus        98 diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   98 DIFRLKDLTILDLSHNQLRE--VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hhcccccceeeecchhhhhh--cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence            45566677777777777754  666666666666666666666666643 34555555556655554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.33  E-value=4.7e-07  Score=95.90  Aligned_cols=73  Identities=26%  Similarity=0.381  Sum_probs=47.7

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCC-CCcccccccccc
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQ-LPSNIEQVQVNG   86 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~-lp~sL~~L~~~~   86 (341)
                      .+|+.|+|++|++..  +|..+.  .+|+.|+|++|.+..+|..+.  ++|+.|++++|++. .+|. +|.+|+.|++++
T Consensus       220 ~nL~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~~sL~~L~Ls~  292 (754)
T PRK15370        220 GNIKTLYANSNQLTS--IPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPENLPEELRYLSVYD  292 (754)
T ss_pred             cCCCEEECCCCcccc--CChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-ccccccCCCCcEEECCC
Confidence            467888888887753  776543  357777777777777776554  46777777766654 4554 556666666655


Q ss_pred             c
Q 039899           87 C   87 (341)
Q Consensus        87 c   87 (341)
                      +
T Consensus       293 N  293 (754)
T PRK15370        293 N  293 (754)
T ss_pred             C
Confidence            4

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.25  E-value=9.8e-08  Score=99.97  Aligned_cols=81  Identities=27%  Similarity=0.473  Sum_probs=61.8

Q ss_pred             CCCCCCCCCCcEEeccCCCCCCCCCCcc-ccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cc
Q 039899            1 LPSLLGLCSLTKLDISDCNLGEGAIPSD-IGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PS   77 (341)
Q Consensus         1 LPsl~~L~~L~~LdLs~~~l~eg~iP~~-i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~   77 (341)
                      +|.+.++++|+.|+|++|++  +++|.+ +.+|..|++|+||||.++.||.++..+..|+.|...+|.++ ..|++  .+
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL--~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~  452 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRL--NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFPELAQLP  452 (1081)
T ss_pred             hhhhccccceeeeeeccccc--ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-echhhhhcC
Confidence            46788899999999999999  459975 78899999999999999999988877777777766666653 44442  23


Q ss_pred             ccccccc
Q 039899           78 NIEQVQV   84 (341)
Q Consensus        78 sL~~L~~   84 (341)
                      .|+.+|+
T Consensus       453 qL~~lDl  459 (1081)
T KOG0618|consen  453 QLKVLDL  459 (1081)
T ss_pred             cceEEec
Confidence            4444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.22  E-value=2e-06  Score=91.19  Aligned_cols=101  Identities=21%  Similarity=0.310  Sum_probs=78.9

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCC-CCcccccccccc
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQ-LPSNIEQVQVNG   86 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~-lp~sL~~L~~~~   86 (341)
                      ++|+.|+|++|++..  +|..+.  ++|+.|+|++|+|+.||.++.  .+|+.|+|++|.+. .||. +|.+|+.|++++
T Consensus       199 ~~L~~L~Ls~N~Lts--LP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls~  271 (754)
T PRK15370        199 EQITTLILDNNELKS--LPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPERLPSALQSLDLFH  271 (754)
T ss_pred             cCCcEEEecCCCCCc--CChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChhHhCCCCEEECcC
Confidence            469999999999974  898765  589999999999999998765  47999999999875 6664 677899999964


Q ss_pred             ccccCcchhhhHHHHhhchhccCCCCccccccCC
Q 039899           87 CASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPG  120 (341)
Q Consensus        87 c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg  120 (341)
                       ..|..+   |..+...++.+++++|.+.. +|+
T Consensus       272 -N~L~~L---P~~l~~sL~~L~Ls~N~Lt~-LP~  300 (754)
T PRK15370        272 -NKISCL---PENLPEELRYLSVYDNSIRT-LPA  300 (754)
T ss_pred             -CccCcc---ccccCCCCcEEECCCCcccc-Ccc
Confidence             356654   33444457788888888874 454

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.22  E-value=2.6e-06  Score=90.38  Aligned_cols=36  Identities=39%  Similarity=0.484  Sum_probs=17.9

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP   49 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP   49 (341)
                      +|+.|++++|+++.  +|..   +++|++|+|++|+|+.+|
T Consensus       223 ~L~~L~L~~N~Lt~--LP~l---p~~Lk~LdLs~N~LtsLP  258 (788)
T PRK15387        223 HITTLVIPDNNLTS--LPAL---PPELRTLEVSGNQLTSLP  258 (788)
T ss_pred             CCCEEEccCCcCCC--CCCC---CCCCcEEEecCCccCccc
Confidence            45555555555532  4432   344555555555555444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.15  E-value=1.7e-06  Score=58.47  Aligned_cols=38  Identities=29%  Similarity=0.574  Sum_probs=18.4

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL   48 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L   48 (341)
                      +|++|+|++|++.+  +|..++.|++|+.|+|++|.|+.+
T Consensus         2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCC
Confidence            45555555555543  554455555555555555555543

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.14  E-value=9.9e-08  Score=92.14  Aligned_cols=78  Identities=26%  Similarity=0.417  Sum_probs=54.3

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCc--cccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPS--NIEQ   81 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~--sL~~   81 (341)
                      ++++.+|..|++.+|.+.+  +|++.-+|+.|++||...|-++++|+.++.+.+|..|+|..|++ +++|++|+  .+++
T Consensus       156 ~~~~~~l~~l~~~~n~l~~--l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki-~~lPef~gcs~L~E  232 (565)
T KOG0472|consen  156 MVNLSKLSKLDLEGNKLKA--LPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI-RFLPEFPGCSLLKE  232 (565)
T ss_pred             HHHHHHHHHhhccccchhh--CCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc-ccCCCCCccHHHHH
Confidence            4455556666666666653  66655557777777777777888888888888888888888887 56777663  4444


Q ss_pred             ccc
Q 039899           82 VQV   84 (341)
Q Consensus        82 L~~   84 (341)
                      |++
T Consensus       233 lh~  235 (565)
T KOG0472|consen  233 LHV  235 (565)
T ss_pred             HHh
Confidence            444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.14  E-value=5.3e-06  Score=88.04  Aligned_cols=74  Identities=31%  Similarity=0.338  Sum_probs=39.8

Q ss_pred             CCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCccccccccccccccCcchhhhHHHHhhchhccCCCC
Q 039899           33 CSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIP  112 (341)
Q Consensus        33 ~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n  112 (341)
                      .+|+.|+|++|+|+.+|...   ++|+.|++++|++. .+|.+|.+|+.|+++++ .|..++..+    ..++.+++++|
T Consensus       342 ~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~-~LP~l~~~L~~LdLs~N-~Lt~LP~l~----s~L~~LdLS~N  412 (788)
T PRK15387        342 SGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLT-SLPALPSGLKELIVSGN-RLTSLPVLP----SELKELMVSGN  412 (788)
T ss_pred             cccceEecCCCccCCCCCCC---cccceehhhccccc-cCcccccccceEEecCC-cccCCCCcc----cCCCEEEccCC
Confidence            36777777777777777432   34555566665543 45555555666655443 233332221    22444555555


Q ss_pred             ccc
Q 039899          113 HLS  115 (341)
Q Consensus       113 ~~~  115 (341)
                      .++
T Consensus       413 ~Ls  415 (788)
T PRK15387        413 RLT  415 (788)
T ss_pred             cCC
Confidence            554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.08  E-value=6.9e-07  Score=89.61  Aligned_cols=63  Identities=32%  Similarity=0.481  Sum_probs=41.0

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR   68 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~   68 (341)
                      ++.+|..|++|||+.|+++-  +|..++.|+ |+.|.+++|+++.+|..|+.+..|..|+.+.|.+
T Consensus       116 ~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei  178 (722)
T KOG0532|consen  116 AICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI  178 (722)
T ss_pred             hhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhh
Confidence            45566667777777777653  666666555 6666666666666666666666666666666655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.04  E-value=3.8e-06  Score=56.70  Aligned_cols=40  Identities=28%  Similarity=0.358  Sum_probs=34.1

Q ss_pred             CCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCC
Q 039899           33 CSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLP   73 (341)
Q Consensus        33 ~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP   73 (341)
                      ++|++|+|++|+|+.+|+.|++|++|+.|++++|++. .+|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC-CCc
Confidence            4799999999999999999999999999999999874 444

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.03  E-value=5.7e-06  Score=72.68  Aligned_cols=105  Identities=18%  Similarity=0.219  Sum_probs=27.8

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCcccc-CCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCC-C---Ccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIG-NICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQ-L---PSN   78 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~-~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~-l---p~s   78 (341)
                      +.+...+++|+|++|.|..  | +.++ .+.+|+.|+|++|.++.++ .+..|++|+.|++++|++. ++++ +   .++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             ccccccccccccccccccc--c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            4455567777887777753  4 3565 4677778888888777775 5667777778888777764 3432 1   246


Q ss_pred             ccccccccc--cccCcchhhhHHHHhhchhccCCCCccc
Q 039899           79 IEQVQVNGC--ASLGTLSHALKLCKSIDVEVSKPIPHLS  115 (341)
Q Consensus        79 L~~L~~~~c--~sL~~l~~~p~~l~~~l~~l~l~~n~~~  115 (341)
                      |+.|++++.  ..+..+..+-  ....++.+++.+|.++
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~--~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLS--SLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGG--G-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCChHHhHHHH--cCCCcceeeccCCccc
Confidence            666666432  1222221110  1123666777777765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.98  E-value=3.4e-06  Score=85.64  Aligned_cols=107  Identities=21%  Similarity=0.273  Sum_probs=76.7

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCC-CC---cc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQ-LP---SN   78 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~-lp---~s   78 (341)
                      .++.|+.|+.+.+..|++....||.+|..|.-|..||||.|.+.+.|..+..-.++-.|+|++|++ .+||. +.   ..
T Consensus        73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtD  151 (1255)
T KOG0444|consen   73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTD  151 (1255)
T ss_pred             hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHh
Confidence            356778888888888888766799999999999999999999999999999999999999999987 56664 22   23


Q ss_pred             ccccccccccccCcchhhhHHHH--hhchhccCCCCcc
Q 039899           79 IEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHL  114 (341)
Q Consensus        79 L~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~  114 (341)
                      |-.|++++. .|+.+   |..+.  ..++.+.|++|.+
T Consensus       152 LLfLDLS~N-rLe~L---PPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  152 LLFLDLSNN-RLEML---PPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             Hhhhccccc-hhhhc---CHHHHHHhhhhhhhcCCChh
Confidence            345555442 34444   33332  2355555555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.97  E-value=2.3e-06  Score=92.23  Aligned_cols=80  Identities=30%  Similarity=0.436  Sum_probs=69.6

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCC---cccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLP---SNIE   80 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp---~sL~   80 (341)
                      |..|+.|++|||++|.-. +.+|++|+.|-+|++|+|++..+..+|.++++|.+|.+|++..+..+.++|...   .+|+
T Consensus       567 f~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            667999999999998776 789999999999999999999999999999999999999999999887776543   3444


Q ss_pred             cccc
Q 039899           81 QVQV   84 (341)
Q Consensus        81 ~L~~   84 (341)
                      +|.+
T Consensus       646 ~L~l  649 (889)
T KOG4658|consen  646 VLRL  649 (889)
T ss_pred             EEEe
Confidence            4443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.97  E-value=3.7e-06  Score=73.85  Aligned_cols=61  Identities=26%  Similarity=0.306  Sum_probs=29.2

Q ss_pred             CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhc-cCCCCccEEEcCCcccc
Q 039899            6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASI-NLLSKLWIIELEECQRL   69 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si-~~Ls~L~~L~Ls~c~~l   69 (341)
                      .+.+|+.|+|++|.+..  ++ .+..++.|+.|+|++|.++++++.+ ..+++|+.|+|++|++.
T Consensus        40 ~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~  101 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKIS  101 (175)
T ss_dssp             T-TT--EEE-TTS--S----T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---
T ss_pred             hhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCC
Confidence            46789999999999974  65 5888999999999999999998766 46899999999999884

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.90  E-value=5.4e-06  Score=83.64  Aligned_cols=132  Identities=16%  Similarity=0.123  Sum_probs=80.3

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC-CChhccCCCCccEEEcCCccccccCCCC---Cccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFS-LPASINLLSKLWIIELEECQRLQSLPQL---PSNI   79 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~-LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL   79 (341)
                      |-.|..+++|+|+.|++.+ ---..+.+|++|+.|+||.|.|.. -+.++....+|+.|+|++|++.+--|+-   ...|
T Consensus       265 Fy~l~kme~l~L~~N~l~~-vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  265 FYGLEKMEHLNLETNRLQA-VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL  343 (873)
T ss_pred             eeeecccceeecccchhhh-hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence            3456667777787777763 223346778888888888888883 3567777888888888888775322221   2344


Q ss_pred             cccccccccccCcchhhhHHHHhhchhccCCCCccccccCCC-----CccccchhccCCCeEE
Q 039899           80 EQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGS-----EISKCFRYQKEDSAMA  137 (341)
Q Consensus        80 ~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg~-----~iP~wf~~~~~g~si~  137 (341)
                      +.|+++. .++..+..---.+.+.+++++|++|.++.++-..     .+|..-.....||.+.
T Consensus       344 e~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk  405 (873)
T KOG4194|consen  344 EELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK  405 (873)
T ss_pred             hhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence            4444432 1333332211122455888899999888776432     4565555556677665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.86  E-value=8.5e-06  Score=82.24  Aligned_cols=65  Identities=28%  Similarity=0.422  Sum_probs=47.5

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCC-ccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIP-SDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQR   68 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP-~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~   68 (341)
                      |++..=.++++|+|++|.|+.  +- ..|.+|.+|..|.|+.|.++.||. ++++|++|+.|+|..|++
T Consensus       167 ~sfp~~~ni~~L~La~N~It~--l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  167 PSFPAKVNIKKLNLASNRITT--LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             CCCCCCCCceEEeeccccccc--cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence            345555567777777777753  42 346777888888888888888885 677788888888888876

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.81  E-value=3.3e-06  Score=81.79  Aligned_cols=74  Identities=26%  Similarity=0.399  Sum_probs=50.7

Q ss_pred             CCCCCCCCCCcEEeccCCCCCCCCCCcccc-CCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCccc
Q 039899            1 LPSLLGLCSLTKLDISDCNLGEGAIPSDIG-NICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNI   79 (341)
Q Consensus         1 LPsl~~L~~L~~LdLs~~~l~eg~iP~~i~-~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL   79 (341)
                      +|+|++...|++|.++.|++.  .+|.+++ +|++|..|||..|+++++|..+.-|.+|.+|++++|.+.    .+|.++
T Consensus       221 lPef~gcs~L~Elh~g~N~i~--~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is----~Lp~sL  294 (565)
T KOG0472|consen  221 LPEFPGCSLLKELHVGENQIE--MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS----SLPYSL  294 (565)
T ss_pred             CCCCCccHHHHHHHhcccHHH--hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc----cCCccc
Confidence            466666666666666666663  3666665 677777777777777777777777777777777777665    455555


Q ss_pred             c
Q 039899           80 E   80 (341)
Q Consensus        80 ~   80 (341)
                      .
T Consensus       295 g  295 (565)
T KOG0472|consen  295 G  295 (565)
T ss_pred             c
Confidence            3

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.53  E-value=4.5e-05  Score=74.78  Aligned_cols=75  Identities=33%  Similarity=0.488  Sum_probs=42.9

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCC---CCccccccccc
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQ---LPSNIEQVQVN   85 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~---lp~sL~~L~~~   85 (341)
                      +|+.|++++|.+.+  +|..++.+++|+.|+++.|.+..+|...+.++.|+.|++++|++ ..+|.   .+..|+.|.+.
T Consensus       141 nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhc
Confidence            56666666666643  55556666666666666666666665555566666666666655 23443   34445555554


Q ss_pred             c
Q 039899           86 G   86 (341)
Q Consensus        86 ~   86 (341)
                      +
T Consensus       218 ~  218 (394)
T COG4886         218 N  218 (394)
T ss_pred             C
Confidence            3

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.50  E-value=7.3e-05  Score=53.61  Aligned_cols=38  Identities=26%  Similarity=0.354  Sum_probs=34.4

Q ss_pred             CCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccc
Q 039899           33 CSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQ   70 (341)
Q Consensus        33 ~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~   70 (341)
                      ++|+.|+|++|.++.+|. .+..+++|+.|++++|++..
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~   39 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS   39 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc
Confidence            579999999999999985 78999999999999999864

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.45  E-value=0.00029  Score=69.56  Aligned_cols=83  Identities=19%  Similarity=0.379  Sum_probs=56.7

Q ss_pred             CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccC-CCCCCCChhccCCCCccEEEcCCccccccCCCCCccccccccc
Q 039899            7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSK-NRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVN   85 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~-N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~~   85 (341)
                      +..++.|++++|.+..  +|.   -.++|+.|.+++ ++++.+|..+.  ++|+.|.+++|..+   +.+|++|+.|++.
T Consensus        51 ~~~l~~L~Is~c~L~s--LP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L---~sLP~sLe~L~L~  120 (426)
T PRK15386         51 ARASGRLYIKDCDIES--LPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEI---SGLPESVRSLEIK  120 (426)
T ss_pred             hcCCCEEEeCCCCCcc--cCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccc---cccccccceEEeC
Confidence            5678899999998864  882   234699999987 46778887663  68899999988654   3566777777764


Q ss_pred             cccccCcchhhhHHH
Q 039899           86 GCASLGTLSHALKLC  100 (341)
Q Consensus        86 ~c~sL~~l~~~p~~l  100 (341)
                       +..+..+..+|.++
T Consensus       121 -~n~~~~L~~LPssL  134 (426)
T PRK15386        121 -GSATDSIKNVPNGL  134 (426)
T ss_pred             -CCCCcccccCcchH
Confidence             33333334444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.39  E-value=2.5e-05  Score=78.67  Aligned_cols=142  Identities=21%  Similarity=0.241  Sum_probs=97.2

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCC-ccccccccccc
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLP-SNIEQVQVNGC   87 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp-~sL~~L~~~~c   87 (341)
                      -|+.|-+++|++.  .+|..||.+..|..||.+.|.+.++|+-++.|.+|+.|.+..|.++.-.+++- -.|..||+ .|
T Consensus       144 pLkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDf-Sc  220 (722)
T KOG0532|consen  144 PLKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDF-SC  220 (722)
T ss_pred             cceeEEEecCccc--cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeec-cc
Confidence            3899999999994  59999999999999999999999999999999999999999999873222221 12334454 34


Q ss_pred             cccCcchhhhHHHHhh--chhccCCCCccc-----cccCCC-CccccchhccCCCeEEEEcCCCCCCCCccceEEEEEEe
Q 039899           88 ASLGTLSHALKLCKSI--DVEVSKPIPHLS-----IVVPGS-EISKCFRYQKEDSAMAVTMPLFLRENEVVGYAMCCVFN  159 (341)
Q Consensus        88 ~sL~~l~~~p~~l~~~--l~~l~l~~n~~~-----~~lPg~-~iP~wf~~~~~g~si~~~Lp~~~~~~~~~gf~~c~v~~  159 (341)
                      ..+..+   |-.+.++  |+.+.|.+|.+.     +|+-|. +|=+|+.-|.........++.   ...-.+|..|.+-.
T Consensus       221 Nkis~i---Pv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q~~~a~~~~t---~~RP~~~~~c~~ed  294 (722)
T KOG0532|consen  221 NKISYL---PVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQSGGALDLYT---TLRPRHFSSCHVED  294 (722)
T ss_pred             Cceeec---chhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhccccCCccccc---ccCCcccCCcchhh
Confidence            444444   4444333  788888888775     455554 666777766653222222221   12344566677743

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.34  E-value=8.2e-05  Score=70.14  Aligned_cols=109  Identities=18%  Similarity=0.182  Sum_probs=72.3

Q ss_pred             CCC-CCCcEEeccCCCCCCCC----CCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCcccccc---
Q 039899            5 LGL-CSLTKLDISDCNLGEGA----IPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQRLQS---   71 (341)
Q Consensus         5 ~~L-~~L~~LdLs~~~l~eg~----iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~l~~---   71 (341)
                      ..+ ++|+.|+|++|.++ +.    ++..+..+.+|+.|+|++|.+.     .++..+..+++|+.|++++|.+...   
T Consensus       133 ~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  211 (319)
T cd00116         133 KDLPPALEKLVLGRNRLE-GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS  211 (319)
T ss_pred             HhCCCCceEEEcCCCcCC-chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence            345 78999999999987 32    3345667788999999999888     3555666778999999999976421   


Q ss_pred             -CCC---CCccccccccccccccCc--chhhhHHHH---hhchhccCCCCccc
Q 039899           72 -LPQ---LPSNIEQVQVNGCASLGT--LSHALKLCK---SIDVEVSKPIPHLS  115 (341)
Q Consensus        72 -lP~---lp~sL~~L~~~~c~sL~~--l~~~p~~l~---~~l~~l~l~~n~~~  115 (341)
                       ++.   -.++|+.|++++|. +..  +..+...+.   ..++.+++++|.+.
T Consensus       212 ~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         212 ALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence             111   12568888887763 332  112222232   34677788888765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.25  E-value=0.00017  Score=70.77  Aligned_cols=103  Identities=31%  Similarity=0.372  Sum_probs=76.8

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCC-CCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCC---CCccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNIC-SLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQ---LPSNI   79 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~-~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~---lp~sL   79 (341)
                      +..++.++.|++.++++++  +|..++.+. +|+.|++++|.+..+|..++.+++|+.|++++|++. .+|.   .++.+
T Consensus       112 ~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L  188 (394)
T COG4886         112 LLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL  188 (394)
T ss_pred             hhcccceeEEecCCccccc--CccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence            3445678999999999976  999888885 999999999999999988999999999999999985 4444   45667


Q ss_pred             cccccccccccCcchhhhHH--HHhhchhccCCCCc
Q 039899           80 EQVQVNGCASLGTLSHALKL--CKSIDVEVSKPIPH  113 (341)
Q Consensus        80 ~~L~~~~c~sL~~l~~~p~~--l~~~l~~l~l~~n~  113 (341)
                      +.|++++. .++   .+|..  ....++.+.+++|.
T Consensus       189 ~~L~ls~N-~i~---~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         189 NNLDLSGN-KIS---DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hheeccCC-ccc---cCchhhhhhhhhhhhhhcCCc
Confidence            77766553 122   23333  33346666666663

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.24  E-value=5.3e-05  Score=80.03  Aligned_cols=65  Identities=29%  Similarity=0.476  Sum_probs=57.6

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCccc
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNI   79 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL   79 (341)
                      .|+.|||++|.++  .+|..|..+..|+.|+++.|.|.++|.+++++.+|++|.|.+|++.    .+|.++
T Consensus        46 ~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~----~lP~~~  110 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ----SLPASI  110 (1081)
T ss_pred             eeEEeeccccccc--cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh----cCchhH
Confidence            4899999999995  5999999999999999999999999999999999999999988774    455554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.18  E-value=0.00015  Score=68.34  Aligned_cols=99  Identities=21%  Similarity=0.259  Sum_probs=68.1

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC---Ccccccccc
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL---PSNIEQVQV   84 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~~   84 (341)
                      ..|+.||||+|.+++  |-.+..-++.++.|+||.|.+..+.. +..|++|+.|+|++|.+. ++-.+   ..+++.|.+
T Consensus       284 q~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            458889999999975  88888889999999999999998764 888999999999999874 33332   345555554


Q ss_pred             ccccccCcchhhhHHHHhh--chhccCCCCccc
Q 039899           85 NGCASLGTLSHALKLCKSI--DVEVSKPIPHLS  115 (341)
Q Consensus        85 ~~c~sL~~l~~~p~~l~~~--l~~l~l~~n~~~  115 (341)
                      .+. .++.++.    +.++  +..+++++|++.
T Consensus       360 a~N-~iE~LSG----L~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  360 AQN-KIETLSG----LRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             hhh-hHhhhhh----hHhhhhheeccccccchh
Confidence            321 1222221    1221  455667777664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.05  E-value=0.00018  Score=69.87  Aligned_cols=73  Identities=23%  Similarity=0.257  Sum_probs=63.3

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCCCc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQLPS   77 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~lp~   77 (341)
                      |.+|++|++|+|++|.++ +.-+..|..+++|++|.|.+|++..+-. .+.+|+.|+.|+|.+|+++..-|....
T Consensus       270 f~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~  343 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ  343 (498)
T ss_pred             HhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence            678999999999999998 5557789999999999999999997765 688999999999999999876665443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.03  E-value=0.00014  Score=68.46  Aligned_cols=110  Identities=20%  Similarity=0.155  Sum_probs=67.0

Q ss_pred             CCCCCCcEEeccCCCCCC-----CCCCccccCCCCCcEEEccCCCCC-CCChhccCCCC---ccEEEcCCccccc-----
Q 039899            5 LGLCSLTKLDISDCNLGE-----GAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSK---LWIIELEECQRLQ-----   70 (341)
Q Consensus         5 ~~L~~L~~LdLs~~~l~e-----g~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~---L~~L~Ls~c~~l~-----   70 (341)
                      ...+.|+.|+++++.+..     +.++..++.+++|+.|+|++|.+. ..+..+..+.+   |+.|++++|++..     
T Consensus        48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~  127 (319)
T cd00116          48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL  127 (319)
T ss_pred             hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHH
Confidence            345667888888877641     112345666778888888888877 45555655555   8888888887652     


Q ss_pred             ---cCCCCCccccccccccccccCc--chhhhHHHHh--hchhccCCCCccc
Q 039899           71 ---SLPQLPSNIEQVQVNGCASLGT--LSHALKLCKS--IDVEVSKPIPHLS  115 (341)
Q Consensus        71 ---~lP~lp~sL~~L~~~~c~sL~~--l~~~p~~l~~--~l~~l~l~~n~~~  115 (341)
                         .++.++++|+.|++.+|. +..  ...++..+..  .++.+++++|.+.
T Consensus       128 l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         128 LAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence               233444677778777764 221  1122333322  3666777777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.88  E-value=0.0014  Score=64.84  Aligned_cols=41  Identities=29%  Similarity=0.494  Sum_probs=29.3

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCC-CCCCCChhc
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKN-RFFSLPASI   52 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N-~~~~LP~si   52 (341)
                      +|+.|.+++|.-. ..+|..+.  ++|+.|.+++| .+..+|.++
T Consensus        73 sLtsL~Lsnc~nL-tsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sL  114 (426)
T PRK15386         73 ELTEITIENCNNL-TTLPGSIP--EGLEKLTVCHCPEISGLPESV  114 (426)
T ss_pred             CCcEEEccCCCCc-ccCCchhh--hhhhheEccCccccccccccc
Confidence            5889999887665 55776553  57888888887 666777543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.80  E-value=0.00036  Score=65.77  Aligned_cols=105  Identities=13%  Similarity=0.084  Sum_probs=68.7

Q ss_pred             CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cccccccc
Q 039899            6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNIEQVQ   83 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL~~L~   83 (341)
                      -++.++.|++|+|.+.+  +- ++..|++|+.||||+|.++++-.+=..|.+.+.|.|++|.+ .++..+  .-+|..|+
T Consensus       305 L~Pkir~L~lS~N~i~~--v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~i-E~LSGL~KLYSLvnLD  380 (490)
T KOG1259|consen  305 LAPKLRRLILSQNRIRT--VQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKI-ETLSGLRKLYSLVNLD  380 (490)
T ss_pred             hccceeEEeccccceee--eh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhH-hhhhhhHhhhhheecc
Confidence            45789999999999974  44 48999999999999999997766556778889999999876 333333  23555566


Q ss_pred             cccccccCcchhhhHHHHh--hchhccCCCCcccc
Q 039899           84 VNGCASLGTLSHALKLCKS--IDVEVSKPIPHLSI  116 (341)
Q Consensus        84 ~~~c~sL~~l~~~p~~l~~--~l~~l~l~~n~~~~  116 (341)
                      +.+. ..+.++.+ +.+.+  -++.+.+.+|.+++
T Consensus       381 l~~N-~Ie~ldeV-~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  381 LSSN-QIEELDEV-NHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             cccc-chhhHHHh-cccccccHHHHHhhcCCCccc
Confidence            5432 11111110 01111  14556677777764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.76  E-value=0.00081  Score=66.81  Aligned_cols=80  Identities=23%  Similarity=0.250  Sum_probs=63.0

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cccccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNIEQ   81 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL~~   81 (341)
                      +..+.+|+.|++.+|++..  +...+.++++|+.|+|++|.|+.+. .+..|+.|+.|++++|.+. .++.+  ...++.
T Consensus        91 l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~-~~~~~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLIS-DISGLESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccccchhh--cccchhhhhcchheecccccccccc-chhhccchhhheeccCcch-hccCCccchhhhc
Confidence            6678889999999999964  6655888999999999999999876 5777888999999999874 45554  456666


Q ss_pred             cccccc
Q 039899           82 VQVNGC   87 (341)
Q Consensus        82 L~~~~c   87 (341)
                      ++++++
T Consensus       167 l~l~~n  172 (414)
T KOG0531|consen  167 LDLSYN  172 (414)
T ss_pred             ccCCcc
Confidence            666443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.61  E-value=9.8e-05  Score=71.63  Aligned_cols=65  Identities=28%  Similarity=0.326  Sum_probs=34.5

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccC-CCCCCCCh-hccCCCCccEEEcCCccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSK-NRFFSLPA-SINLLSKLWIIELEECQR   68 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~-N~~~~LP~-si~~Ls~L~~L~Ls~c~~   68 (341)
                      +|..+++|+.||||+|+|+ ..-|..|..|.+|..|-+.+ |+|+.||. .+++|++|+.|.++-|++
T Consensus        86 aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i  152 (498)
T KOG4237|consen   86 AFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHI  152 (498)
T ss_pred             hccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhh
Confidence            3555555555666665555 33355555555555544444 55555554 455555555555554443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.38  E-value=0.00097  Score=37.97  Aligned_cols=20  Identities=40%  Similarity=0.459  Sum_probs=11.0

Q ss_pred             CcEEEccCCCCCCCChhccC
Q 039899           35 LKELYLSKNRFFSLPASINL   54 (341)
Q Consensus        35 L~~L~Ls~N~~~~LP~si~~   54 (341)
                      |++|+|++|+|+.||++|++
T Consensus         2 L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEESEEGTTTTT
T ss_pred             ccEEECCCCcCEeCChhhcC
Confidence            55555555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.32  E-value=0.00041  Score=58.54  Aligned_cols=57  Identities=25%  Similarity=0.317  Sum_probs=27.5

Q ss_pred             CcEEeccCCCCCCCCCCccccC---CCCCcEEEccCCCCCCCChhccCC-CCccEEEcCCccc
Q 039899           10 LTKLDISDCNLGEGAIPSDIGN---ICSLKELYLSKNRFFSLPASINLL-SKLWIIELEECQR   68 (341)
Q Consensus        10 L~~LdLs~~~l~eg~iP~~i~~---L~~L~~L~Ls~N~~~~LP~si~~L-s~L~~L~Ls~c~~   68 (341)
                      +..|+|+.|.+  +.+++....   ...|+..+|++|.|...|..+... +.++.|+|++|++
T Consensus        29 ~h~ldLssc~l--m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei   89 (177)
T KOG4579|consen   29 LHFLDLSSCQL--MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI   89 (177)
T ss_pred             hhhcccccchh--hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh
Confidence            33455555555  334443322   223444455555555555544433 2455555555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.31  E-value=0.0026  Score=58.68  Aligned_cols=82  Identities=21%  Similarity=0.300  Sum_probs=56.7

Q ss_pred             CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCC--CCC-CCChhccCCCCccEEEcCCcccc--ccCCCCC--ccc
Q 039899            7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKN--RFF-SLPASINLLSKLWIIELEECQRL--QSLPQLP--SNI   79 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N--~~~-~LP~si~~Ls~L~~L~Ls~c~~l--~~lP~lp--~sL   79 (341)
                      +..|+.|.+.++.++.   -..+..|++|+.|.+|.|  .++ .++.....+++|++|++++|++.  .+++.++  .+|
T Consensus        42 ~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            3456677777777752   235667888999999999  444 66666666799999999999874  2333332  467


Q ss_pred             cccccccccccC
Q 039899           80 EQVQVNGCASLG   91 (341)
Q Consensus        80 ~~L~~~~c~sL~   91 (341)
                      ..|++.+|....
T Consensus       119 ~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  119 KSLDLFNCSVTN  130 (260)
T ss_pred             hhhhcccCCccc
Confidence            778888887655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.99  E-value=0.0072  Score=55.83  Aligned_cols=66  Identities=27%  Similarity=0.339  Sum_probs=51.0

Q ss_pred             CCCCCCCCcEEeccCC--CCCCCCCCccccCCCCCcEEEccCCCCCC---CChhccCCCCccEEEcCCccccc
Q 039899            3 SLLGLCSLTKLDISDC--NLGEGAIPSDIGNICSLKELYLSKNRFFS---LPASINLLSKLWIIELEECQRLQ   70 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~--~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~---LP~si~~Ls~L~~L~Ls~c~~l~   70 (341)
                      .+..|++|+.|.+|.|  .+. +.++.....+++|++|+|++|.++.   ++ .+..+.+|..|++.+|.-.+
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             cCCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccc
Confidence            3566788999999999  666 5666666667999999999998884   33 35667788899999987653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=0.0021  Score=63.26  Aligned_cols=62  Identities=16%  Similarity=0.184  Sum_probs=36.8

Q ss_pred             CCCCCcEEeccCCCCCCCCCCc--cccCCCCCcEEEccCCCCC---CCChhccCCCCccEEEcCCcccc
Q 039899            6 GLCSLTKLDISDCNLGEGAIPS--DIGNICSLKELYLSKNRFF---SLPASINLLSKLWIIELEECQRL   69 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~--~i~~L~~L~~L~Ls~N~~~---~LP~si~~Ls~L~~L~Ls~c~~l   69 (341)
                      ++.+|+...|.++....  .+.  ....+++++.||||+|-|.   ++-.-+.+|++|+.|+|+.|++.
T Consensus       119 n~kkL~~IsLdn~~V~~--~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~  185 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVED--AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS  185 (505)
T ss_pred             hHHhhhheeecCccccc--cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence            45566666676666632  332  4555667777777777655   22233456667777777776664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.71  E-value=0.0012  Score=55.83  Aligned_cols=64  Identities=19%  Similarity=0.223  Sum_probs=55.0

Q ss_pred             CCCCCCcEEeccCCCCCCCCCCccccC-CCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccc
Q 039899            5 LGLCSLTKLDISDCNLGEGAIPSDIGN-ICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQ   70 (341)
Q Consensus         5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~-L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~   70 (341)
                      .+...|+..+|++|.+.+  +|+.+.. .+.++.|+|++|.++.+|..+..++.|+.|+++.|++..
T Consensus        50 ~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~  114 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNA  114 (177)
T ss_pred             hCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcccc
Confidence            345668888999999964  9988755 458999999999999999999999999999999999864

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.65  E-value=0.0021  Score=66.99  Aligned_cols=58  Identities=26%  Similarity=0.324  Sum_probs=35.2

Q ss_pred             CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccc
Q 039899            7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQR   68 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~   68 (341)
                      ++.|+.|||+.|++.+  +- .+..++.|++|||+.|.+..+|. +...+ +|+.|.+++|.+
T Consensus       186 l~ale~LnLshNk~~~--v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l  244 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTK--VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNAL  244 (1096)
T ss_pred             HHHhhhhccchhhhhh--hH-HHHhcccccccccccchhccccccchhhh-hheeeeecccHH
Confidence            4556667777777653  32 56666777777777777776664 22222 266666666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.58  E-value=0.014  Score=52.30  Aligned_cols=58  Identities=19%  Similarity=0.345  Sum_probs=42.9

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccC-CCCccEEEcCCcccc
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINL-LSKLWIIELEECQRL   69 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~-Ls~L~~L~Ls~c~~l   69 (341)
                      ....+||++|.+.  .++ .+..++.|.+|.|+.|.|+.|-+.+.. +++|..|.|.+|.+.
T Consensus        43 ~~d~iDLtdNdl~--~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR--KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             ccceecccccchh--hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            4567888888884  243 577788888888888888877666655 456888888887763

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.46  E-value=0.0053  Score=60.97  Aligned_cols=63  Identities=25%  Similarity=0.347  Sum_probs=53.5

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQ   70 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~   70 (341)
                      +..+++|++|+|++|.|..  +. .+..++.|+.|++++|.++.++ .+..+..|+.+++++|....
T Consensus       114 l~~~~~L~~L~ls~N~I~~--i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~  176 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITK--LE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVD  176 (414)
T ss_pred             hhhhhcchheecccccccc--cc-chhhccchhhheeccCcchhcc-CCccchhhhcccCCcchhhh
Confidence            5678999999999999973  43 5677888999999999999887 56669999999999998864

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.11  E-value=0.0068  Score=65.82  Aligned_cols=65  Identities=32%  Similarity=0.475  Sum_probs=55.2

Q ss_pred             CC-CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCcc
Q 039899            1 LP-SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQ   67 (341)
Q Consensus         1 LP-sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~   67 (341)
                      || +++.|-+|++|+|+++.+..  +|..+++|..|.+|++..+... .+|.-+..|++|++|.+..-.
T Consensus       587 LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  587 LPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             CChHHhhhhhhhcccccCCCccc--cchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            56 57789999999999999975  9999999999999999988755 555556669999999987643

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.11  E-value=0.0059  Score=34.68  Aligned_cols=22  Identities=45%  Similarity=0.665  Sum_probs=17.9

Q ss_pred             CCcEEeccCCCCCCCCCCccccCC
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNI   32 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L   32 (341)
                      +|++|||++|++++  +|+++++|
T Consensus         1 ~L~~Ldls~n~l~~--ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTS--IPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESE--EGTTTTT-
T ss_pred             CccEEECCCCcCEe--CChhhcCC
Confidence            58999999999974  99887654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.56  E-value=0.021  Score=30.35  Aligned_cols=14  Identities=57%  Similarity=0.698  Sum_probs=4.8

Q ss_pred             CcEEEccCCCCCCC
Q 039899           35 LKELYLSKNRFFSL   48 (341)
Q Consensus        35 L~~L~Ls~N~~~~L   48 (341)
                      |+.|+|++|.++++
T Consensus         3 L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    3 LRTLDLSNNRLTSL   16 (17)
T ss_dssp             -SEEEETSS--SSE
T ss_pred             cCEEECCCCCCCCC
Confidence            44444444444443

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.10  E-value=0.041  Score=58.35  Aligned_cols=59  Identities=25%  Similarity=0.370  Sum_probs=31.3

Q ss_pred             CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC--hhccCCCCccEEEcCCcc
Q 039899            6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP--ASINLLSKLWIIELEECQ   67 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP--~si~~Ls~L~~L~Ls~c~   67 (341)
                      ++++|..||+|+++++.  + ..++.|.+|+.|.+.+=.|..-+  ..+.+|++|+.||+|.-+
T Consensus       171 sFpNL~sLDIS~TnI~n--l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISN--L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             ccCccceeecCCCCccC--c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            45566666666666642  2 44555555555555544444322  134555666666665443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.63  E-value=0.06  Score=31.53  Aligned_cols=21  Identities=43%  Similarity=0.592  Sum_probs=15.7

Q ss_pred             CCCCcEEEccCCCCCCCChhc
Q 039899           32 ICSLKELYLSKNRFFSLPASI   52 (341)
Q Consensus        32 L~~L~~L~Ls~N~~~~LP~si   52 (341)
                      |++|+.|+|++|.++.||..+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467788888888888887654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.63  E-value=0.06  Score=31.53  Aligned_cols=21  Identities=43%  Similarity=0.592  Sum_probs=15.7

Q ss_pred             CCCCcEEEccCCCCCCCChhc
Q 039899           32 ICSLKELYLSKNRFFSLPASI   52 (341)
Q Consensus        32 L~~L~~L~Ls~N~~~~LP~si   52 (341)
                      |++|+.|+|++|.++.||..+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467788888888888887654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=93.60  E-value=0.036  Score=54.81  Aligned_cols=60  Identities=27%  Similarity=0.371  Sum_probs=36.5

Q ss_pred             CCCCcEEeccCCCCCCCCCC--ccccCCCCCcEEEccCCCCC--CCChh-----ccCCCCccEEEcCCccc
Q 039899            7 LCSLTKLDISDCNLGEGAIP--SDIGNICSLKELYLSKNRFF--SLPAS-----INLLSKLWIIELEECQR   68 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP--~~i~~L~~L~~L~Ls~N~~~--~LP~s-----i~~Ls~L~~L~Ls~c~~   68 (341)
                      ++.|+.|||++|++.+  ++  ..++.|+.|..|+++.+.+.  .+|+.     -..+.+|++|+++.|+.
T Consensus       245 ~~~L~~LdLs~N~li~--~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLID--FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhHHhhccccCCcccc--cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            4456666777666654  44  44666677777777776666  33432     23456677777777665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.03  E-value=0.019  Score=60.11  Aligned_cols=64  Identities=28%  Similarity=0.274  Sum_probs=52.1

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQ   70 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~   70 (341)
                      +..++.|++|||++|.+..  +|.--..--.|+.|.|.+|.+++|- .|.+|.+|+.||+++|-+.+
T Consensus       205 Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  205 LRRLPKLKHLDLSYNCLRH--VPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             HHhcccccccccccchhcc--ccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccchhHhhhhc
Confidence            4568899999999999964  7753222224999999999999886 79999999999999997754

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.70  E-value=0.0074  Score=56.55  Aligned_cols=58  Identities=28%  Similarity=0.281  Sum_probs=40.6

Q ss_pred             CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899            7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR   68 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~   68 (341)
                      |.+.+.|+.-+|.|.+  | +-...|+.|+.|.||-|.|++|- .+..+++|+.|.|..|.+
T Consensus        18 l~~vkKLNcwg~~L~D--I-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I   75 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD--I-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCI   75 (388)
T ss_pred             HHHhhhhcccCCCccH--H-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhccc
Confidence            4566777888887764  2 23456777888888888877764 466777777777777655

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=92.46  E-value=0.14  Score=45.93  Aligned_cols=72  Identities=17%  Similarity=0.286  Sum_probs=40.8

Q ss_pred             CcEEeccCCCCCCCCCCccccCC-CCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC---Cccccccccc
Q 039899           10 LTKLDISDCNLGEGAIPSDIGNI-CSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL---PSNIEQVQVN   85 (341)
Q Consensus        10 L~~LdLs~~~l~eg~iP~~i~~L-~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~~~   85 (341)
                      -+.++|.+..+.   .-..+|.+ -+...+||+.|.+..++ .+..+.+|.+|.|++|++..-=|.+   .+.+..|.+.
T Consensus        21 e~e~~LR~lkip---~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIP---VIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             cccccccccccc---chhhccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            445666665543   22223332 25667777777777665 4666777777777777776443332   2344444443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.02  E-value=0.088  Score=27.93  Aligned_cols=17  Identities=35%  Similarity=0.581  Sum_probs=10.8

Q ss_pred             CCCcEEeccCCCCCCCCCC
Q 039899            8 CSLTKLDISDCNLGEGAIP   26 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP   26 (341)
                      ++|+.|+|++|++.+  +|
T Consensus         1 ~~L~~L~l~~n~L~~--lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTS--LP   17 (17)
T ss_dssp             TT-SEEEETSS--SS--E-
T ss_pred             CccCEEECCCCCCCC--Cc
Confidence            479999999999864  65

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=90.70  E-value=0.091  Score=55.78  Aligned_cols=61  Identities=21%  Similarity=0.252  Sum_probs=41.0

Q ss_pred             CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899            7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR   68 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~   68 (341)
                      ||+|+.|.+++=.+..+.+-.-..++++|..||+|+.+++.+ ..|++|.+|+.|.+.+=.+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~  207 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEF  207 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCC
Confidence            567777777765554222233345677888888888888877 6788888888877765433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.91  E-value=0.27  Score=46.76  Aligned_cols=38  Identities=21%  Similarity=0.302  Sum_probs=17.7

Q ss_pred             CCcEEeccCCCCCC-CCCCccccCCCCCcEEEccCCCCC
Q 039899            9 SLTKLDISDCNLGE-GAIPSDIGNICSLKELYLSKNRFF   46 (341)
Q Consensus         9 ~L~~LdLs~~~l~e-g~iP~~i~~L~~L~~L~Ls~N~~~   46 (341)
                      .++.|||.+|.+++ ..|-.-+.+|+.|+.|+|+.|.+.
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~  110 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS  110 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence            34555555555542 001122344555555555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.37  E-value=0.036  Score=52.06  Aligned_cols=84  Identities=24%  Similarity=0.219  Sum_probs=62.0

Q ss_pred             CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh--hccCCCCccEEEcCCccccccCCCCCcccccc
Q 039899            5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA--SINLLSKLWIIELEECQRLQSLPQLPSNIEQV   82 (341)
Q Consensus         5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~--si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L   82 (341)
                      .+|+.|++|.||-|.++.  + ..+...+.|++|+|..|.|..|-+  -+.+|++|+.|+|..|..-|.   -+++-+.-
T Consensus        38 ~kMp~lEVLsLSvNkIss--L-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~---ag~nYR~~  111 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISS--L-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE---AGQNYRRK  111 (388)
T ss_pred             HhcccceeEEeecccccc--c-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc---cchhHHHH
Confidence            368899999999999973  3 457788999999999999987764  578999999999999988763   33333322


Q ss_pred             ccccccccCcch
Q 039899           83 QVNGCASLGTLS   94 (341)
Q Consensus        83 ~~~~c~sL~~l~   94 (341)
                      .+.-+++|+.++
T Consensus       112 VLR~LPnLkKLD  123 (388)
T KOG2123|consen  112 VLRVLPNLKKLD  123 (388)
T ss_pred             HHHHcccchhcc
Confidence            223344555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.60  E-value=0.2  Score=47.69  Aligned_cols=75  Identities=20%  Similarity=0.231  Sum_probs=50.8

Q ss_pred             CcEEeccCCCCCCCCCCcccc-CCCCCcEEEccCCCCC---CCChhccCCCCccEEEcCCccccccCCCCC---cccccc
Q 039899           10 LTKLDISDCNLGEGAIPSDIG-NICSLKELYLSKNRFF---SLPASINLLSKLWIIELEECQRLQSLPQLP---SNIEQV   82 (341)
Q Consensus        10 L~~LdLs~~~l~eg~iP~~i~-~L~~L~~L~Ls~N~~~---~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp---~sL~~L   82 (341)
                      ++.|-+.+|.|-....-..|+ ..+.++.|||.+|.|+   +|-+-+.+|+.|+.|+|+.|++...|..+|   .+|+.|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            335555566553101111233 3567899999999998   666677899999999999999987777766   344444


Q ss_pred             cc
Q 039899           83 QV   84 (341)
Q Consensus        83 ~~   84 (341)
                      .+
T Consensus       127 VL  128 (418)
T KOG2982|consen  127 VL  128 (418)
T ss_pred             EE
Confidence            44

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=85.97  E-value=0.17  Score=48.83  Aligned_cols=83  Identities=20%  Similarity=0.298  Sum_probs=51.3

Q ss_pred             CCCCCCCcEEeccCCCCCC-C--CCCccccCCCCCcEEEccCCCCCC-----CChhc-cCCCCccEEEcCCcccccc---
Q 039899            4 LLGLCSLTKLDISDCNLGE-G--AIPSDIGNICSLKELYLSKNRFFS-----LPASI-NLLSKLWIIELEECQRLQS---   71 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~e-g--~iP~~i~~L~~L~~L~Ls~N~~~~-----LP~si-~~Ls~L~~L~Ls~c~~l~~---   71 (341)
                      +...++|++|||.+|.++. |  .+...+..+++|+.|+++.+.+..     +-..+ ...++|+.|.|.+|.+.+.   
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~  288 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL  288 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence            4456788888888887752 1  133456777888888888887762     11112 2356788888888876542   


Q ss_pred             -----CCCCCccccccccccc
Q 039899           72 -----LPQLPSNIEQVQVNGC   87 (341)
Q Consensus        72 -----lP~lp~sL~~L~~~~c   87 (341)
                           +-+ -+.|..|++.+|
T Consensus       289 ~la~~~~e-k~dL~kLnLngN  308 (382)
T KOG1909|consen  289 ALAACMAE-KPDLEKLNLNGN  308 (382)
T ss_pred             HHHHHHhc-chhhHHhcCCcc
Confidence                 011 345666666665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.55  E-value=0.64  Score=27.01  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=17.6

Q ss_pred             CCCCcEEeccCCCCCCCCCCccc
Q 039899            7 LCSLTKLDISDCNLGEGAIPSDI   29 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~~i   29 (341)
                      |++|+.|+|++|++..  +|...
T Consensus         1 L~~L~~L~L~~N~l~~--lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSS--LPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCc--CCHHH
Confidence            5789999999999965  88754

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.55  E-value=0.64  Score=27.01  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=17.6

Q ss_pred             CCCCcEEeccCCCCCCCCCCccc
Q 039899            7 LCSLTKLDISDCNLGEGAIPSDI   29 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~~i   29 (341)
                      |++|+.|+|++|++..  +|...
T Consensus         1 L~~L~~L~L~~N~l~~--lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSS--LPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCc--CCHHH
Confidence            5789999999999965  88754

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=82.36  E-value=0.87  Score=27.05  Aligned_cols=17  Identities=59%  Similarity=0.770  Sum_probs=11.6

Q ss_pred             CCcEEEccCCCCCCCCh
Q 039899           34 SLKELYLSKNRFFSLPA   50 (341)
Q Consensus        34 ~L~~L~Ls~N~~~~LP~   50 (341)
                      +|+.|++++|.++++|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            56677777777777764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=80.38  E-value=0.12  Score=49.14  Aligned_cols=77  Identities=22%  Similarity=0.294  Sum_probs=35.8

Q ss_pred             CcEEeccCCCCCCCCCCccccCCCCCcEEEccCC-CCC--CCChhccCCCCccEEEcCCccccccCC-----CCCccccc
Q 039899           10 LTKLDISDCNLGEGAIPSDIGNICSLKELYLSKN-RFF--SLPASINLLSKLWIIELEECQRLQSLP-----QLPSNIEQ   81 (341)
Q Consensus        10 L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N-~~~--~LP~si~~Ls~L~~L~Ls~c~~l~~lP-----~lp~sL~~   81 (341)
                      |+.|.|.++.+. ..|-..|..=.+|+.|+|+++ .|+  .+.--+.+++.|..|+|+.|-.....=     .+-+.|+.
T Consensus       212 Lk~lSlEg~~Ld-D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~  290 (419)
T KOG2120|consen  212 LKNLSLEGLRLD-DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ  290 (419)
T ss_pred             hhhccccccccC-cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence            444444444443 223333444455566666554 344  222234555666666666665543221     12345555


Q ss_pred             cccccc
Q 039899           82 VQVNGC   87 (341)
Q Consensus        82 L~~~~c   87 (341)
                      |++++|
T Consensus       291 LNlsG~  296 (419)
T KOG2120|consen  291 LNLSGY  296 (419)
T ss_pred             hhhhhh
Confidence            555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	341
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLS-KNRFFSLPASINLLSKLWI 60
           P++  L  L +LD+  C       P   G    LK L L   +   +LP  I+ L++L  
Sbjct: 223 PAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281

Query: 61  IELEECQRLQSLPQLPSN 78
           ++L  C  L  LP L + 
Sbjct: 282 LDLRGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
                GL +L  L +    +    +P+ I N+ +LK L +  +   +L  +I+ L KL  
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233

Query: 61  IELEECQRLQSLP----QLPSNIEQVQVNGCASLGTL 93
           ++L  C  L++ P       + ++++ +  C++L TL
Sbjct: 234 LDLRGCTALRNYPPIFGGR-APLKRLILKDCSNLLTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 1   LPSLLG-LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLW 59
            P     L  L  + I    L E  +P  +     L+ L L++N   +LPASI  L++L 
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153

Query: 60  IIELEECQRLQSLP 73
            + +  C  L  LP
Sbjct: 154 ELSIRACPELTELP 167

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 15/106 (14%)

Query: 1   LPSLLGLC-SLTKLDISDCN--------LGEGAIPSDIGNICSLKELYLSKNRFFSLPAS 51
           LP+ +     L +L I  C         L       +   + +L+ L L      SLPAS
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201

Query: 52  INLLSKLWIIELEECQRLQSLP----QLPSNIEQVQVNGCASLGTL 93
           I  L  L  +++     L +L      L   +E++ + GC +L   
Sbjct: 202 IANLQNLKSLKIRNSP-LSALGPAIHHL-PKLEELDLRGCTALRNY 245

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 1   LPSLLG-LCSLTKLDISDCN-LGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSK 57
            P + G    L +L + DC+ L    +P DI  +  L++L L        LP+ I  L  
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLT--LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 58  LWIIELEECQRLQSLPQLPSNI 79
             II +    + Q     P   
Sbjct: 303 NCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 4/75 (5%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICS--LKELYLSKNRFFSLPASINLLSKL 58
                   +  +++       + A    + +        L L        P     LS L
Sbjct: 48  SAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHL 106

Query: 59  WIIELEECQRLQSLP 73
             + ++    L  LP
Sbjct: 107 QHMTIDAAG-LMELP 120

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 6/75 (8%), Positives = 15/75 (20%), Gaps = 8/75 (10%)

Query: 7  LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEEC 66
                L          A+      +   +  Y +    +         +   I      
Sbjct: 11 SSGRENLYFQGST----ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR--- 63

Query: 67 QRLQSLPQLPSNIEQ 81
             ++L      +E 
Sbjct: 64 -TGRALKATADLLED 77

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 1/73 (1%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           L        +  + I   NL    + + +  +  L  L    N+      +     KL  
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLAS 357

Query: 61  IELEECQRLQSLP 73
           + L   Q +  +P
Sbjct: 358 LNLAYNQ-ITEIP 369

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 10/71 (14%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWII 61
                L  LT +++ +C      +P+ +  +  ++ + ++ NR  S     +    L   
Sbjct: 243 LKWDNLKDLTDVEVYNCPN-LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL--A 299

Query: 62  ELEECQRLQSL 72
           +    +++Q +
Sbjct: 300 DAPVGEKIQII 310

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 10/92 (10%)

Query: 2   PSLLGLC-SLTKLDISDCNLGE------GAIPSDIGNICSLKELYLSKNRFFSLPASINL 54
             L      L+ +++    L E           +  N   L  + L  N+   L      
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509

Query: 55  --LSKLWIIELEECQRLQSLPQLPSNIEQVQV 84
             L  L  I+L         P  P N   ++ 
Sbjct: 510 TTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKG 540

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASI-NLLSKLWI 60
            SL  +  L  L+     L EG +P+  G+   L  L L+ N+   +PA+      ++  
Sbjct: 324 TSLQKMKKLGMLECLYNQL-EGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 61  IELEECQRLQSLPQLPSNIEQVQVNGCASLGTLS 94
           +     + L+ +P              + +  + 
Sbjct: 382 LSFAHNK-LKYIP------NIFDAKSVSVMSAID 408

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 11/103 (10%)

Query: 1   LPSLLGLCSLTKL---DISDCNLGE------GAIPSDIGNICSLKELYLSKNRFFSLPAS 51
           +P++    S++ +   D S   +G         +        ++  + LS N+    P  
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

Query: 52  I-NLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTL 93
           + +  S L  I L     L  +P+     E         L ++
Sbjct: 452 LFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 7/85 (8%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDI--GNICSLKELYLSKNRFFSLPASINLLSKLW 59
            +      LT +D+    L +  +  D     +  L  + LS N F   P      S L 
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTK--LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLK 539

Query: 60  IIELEECQRLQS---LPQLPSNIEQ 81
              +   +  Q    L + P  I  
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITL 564

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 9/82 (10%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRF-----FSLPASINLLSK 57
           SL     +T L +       G +P  IG +  L+ L L  +          P  I+    
Sbjct: 76  SLNSNGRVTGLSLEGFGA-SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 58  LWIIELEECQRLQSLPQLPSNI 79
               E ++  R+          
Sbjct: 135 D---EQKQKMRMHYQKTFVDYD 153

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 12/113 (10%), Positives = 29/113 (25%), Gaps = 25/113 (22%)

Query: 2   PSLLGLCSLTKLDISDCNLGE------------------GAIPSDIGNICSLKELYLSKN 43
            +++ L  L +  + +                               N+  L ++ +   
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 44  RFF-SLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSH 95
                LP  +  L ++ +I +   +   S  QL  +         A       
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNR-GISGEQLKDDW-----QALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 8/90 (8%)

Query: 2   PSLLGLCSLTKLDISD-----CNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLS 56
              L   +L    I +      N      P  I    SL +L +  N    +   I    
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TP 587

Query: 57  KLWIIELEECQRLQ-SLPQLPSNIEQVQVN 85
            + ++++++   +   L  +   IE     
Sbjct: 588 NISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 10/81 (12%)

Query: 2   PSLLGLC-SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNR--------FFSLPASI 52
            +  G    +  L  +   L       D  ++  +  +  S N         F  L  + 
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 53  NLLSKLWIIELEECQRLQSLP 73
                +  I L   Q +   P
Sbjct: 430 FKGINVSSINLSNNQ-ISKFP 449

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 1/65 (1%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIE 62
                  L K  I+  +  + +I           ++    N    +  ++  L+KL    
Sbjct: 154 PREDFSDLIKDCINS-DPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFY 212

Query: 63  LEECQ 67
           +    
Sbjct: 213 MGNSP 217

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.7 bits (147), Expect = 2e-10
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 11/86 (12%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           LP+L     L KL   +  L    +P        L+EL +S N+  SLP   + L KLW 
Sbjct: 156 LPALPS--ELCKLWAYNNQLTS--LPMLPSG---LQELSVSDNQLASLPTLPSELYKLWA 208

Query: 61  IELEECQRLQSLPQLPSNIEQVQVNG 86
                  RL SLP LPS ++++ V+G
Sbjct: 209 YNN----RLTSLPALPSGLKELIVSG 230

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.4 bits (141), Expect = 1e-09
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           LP  L    +T L I D NL    +P+       L+ L +S N+  SLP     L +L I
Sbjct: 55  LPDCLP-AHITTLVIPDNNLTS--LPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSI 108

Query: 61  IELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDV 105
                   L  LP LPS + ++ + G   L +L       + + V
Sbjct: 109 FSN----PLTHLPALPSGLCKLWIFGN-QLTSLPVLPPGLQELSV 148

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 6e-09
 Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 17/101 (16%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           LP+L     L KL   +  L    +P+       LKEL +S NR  SLP   + L +L  
Sbjct: 196 LPTLPS--ELYKLWAYNNRLTS--LPALPSG---LKELIVSGNRLTSLPVLPSELKELM- 247

Query: 61  IELEECQRLQSLPQLPSNIEQVQVNGC------ASLGTLSH 95
             +   + L SLP LPS +  + V          SL  LS 
Sbjct: 248 --VSGNR-LTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSS 285

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 11/81 (13%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           LP+L     L KL I    L    +P        L+EL +S N+  SLPA  + L KLW 
Sbjct: 116 LPALPS--GLCKLWIFGNQLTS--LPVLPPG---LQELSVSDNQLASLPALPSELCKLWA 168

Query: 61  IELEECQRLQSLPQLPSNIEQ 81
                  +L SLP LPS +++
Sbjct: 169 YNN----QLTSLPMLPSGLQE 185

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           LP L     L +L +S   L    +P        L  L + +N+   LP S+  LS    
Sbjct: 236 LPVLPS--ELKELMVSGNRLTS--LPMLPSG---LLSLSVYRNQLTRLPESLIHLSSETT 288

Query: 61  IELEECQRLQSLPQ 74
           + LE    L     
Sbjct: 289 VNLEGNP-LSERTL 301

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 4/53 (7%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASIN 53
           LP L     L  L +    L    +P  + ++ S   + L  N          
Sbjct: 256 LPMLPS--GLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTLQAL 304

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.3 bits (147), Expect = 4e-10
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLW 59
           +P L    +L  LDIS   L  G     I     LK L +S N+F   +P     L  L 
Sbjct: 216 IPFLGDCSALQHLDISGNKL-SGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQ 272

Query: 60  IIELEECQ 67
            + L E +
Sbjct: 273 YLSLAENK 280

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 1   LPSLLGLCS-LTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKL 58
           +PS L  C+ L  + +S+  L  G IP  IG + +L  L LS N F  ++PA +     L
Sbjct: 482 IPSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540

Query: 59  WIIEL 63
             ++L
Sbjct: 541 IWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 1   LPSLLGLCS-LTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKL 58
           +P  L  CS L  L +S   L  G IPS +G++  L++L L  N     +P  +  +  L
Sbjct: 410 IPPTLSNCSELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468

Query: 59  WIIEL 63
             + L
Sbjct: 469 ETLIL 473

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 1   LPSLLGLCS-LTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKL 58
           +PS LG  S L  L +    L EG IP ++  + +L+ L L  N     +P+ ++  + L
Sbjct: 434 IPSSLGSLSKLRDLKLWLNML-EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492

Query: 59  WIIELEECQ 67
             I L   +
Sbjct: 493 NWISLSNNR 501

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 1   LPSLLG-LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKL 58
           +P  L  + +L  L +   +L  G IPS + N  +L  + LS NR    +P  I  L  L
Sbjct: 458 IPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516

Query: 59  WIIEL 63
            I++L
Sbjct: 517 AILKL 521

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 7   LCSLTKLDISDCNLGEGAIPSDI-GNICSLKELYLSKNRFF-SLPASINLLSKLWIIELE 64
           L SL  L +++     G IP  + G   +L  L LS N F+ ++P      S L  + L 
Sbjct: 268 LKSLQYLSLAENKF-TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 65  ECQ 67
              
Sbjct: 327 SNN 329

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 1   LPSLLG---LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLS 56
           +   L      +L +L + +     G IP  + N   L  L+LS N    ++P+S+  LS
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGF-TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442

Query: 57  KLWIIEL 63
           KL  ++L
Sbjct: 443 KLRDLKL 449

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 1   LPSLLGLCS-LTKLDISDCNLGEGAIPSD-IGNICSLKELYLSKNRFF-SLPASI-NLLS 56
           +P   G CS L  L +S  N   G +P D +  +  LK L LS N F   LP S+ NL +
Sbjct: 310 VPPFFGSCSLLESLALSSNNF-SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368

Query: 57  KLWIIELEECQ 67
            L  ++L    
Sbjct: 369 SLLTLDLSSNN 379

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSD--IGNICSLKELYLSKNRF-FSLPASINL-LS 56
           +       SLT LD+S  +L  G + +   +G+   LK L +S N   F    S  L L+
Sbjct: 93  VSGFKCSASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151

Query: 57  KLWIIEL 63
            L +++L
Sbjct: 152 SLEVLDL 158

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 2   PSLLGLC-SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPA-SINLLSKL 58
             L G C +LT LD+S  +   GA+P   G+   L+ L LS N F   LP  ++  +  L
Sbjct: 287 DFLSGACDTLTGLDLSGNHF-YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345

Query: 59  WIIEL 63
            +++L
Sbjct: 346 KVLDL 350

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 13/110 (11%)

Query: 1   LPSLLG-LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASI------ 52
           +P  +G L +L  L +S+ +   G IP+++G+  SL  L L+ N F  ++PA++      
Sbjct: 506 IPKWIGRLENLAILKLSNNSF-SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564

Query: 53  ---NLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKL 99
              N ++    + ++     +       N+ + Q      L  LS     
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLSTRNPC 613

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINL--LSKL 58
            SLL L  L  L +S+ ++  G++        SL  L LS+N     +    +L   S L
Sbjct: 71  SSLLSLTGLESLFLSNSHIN-GSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128

Query: 59  WIIEL 63
             + +
Sbjct: 129 KFLNV 133

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLW 59
                G   L  L IS   +  G +   +    +L+ L +S N F   +P  +   S L 
Sbjct: 171 WVLSDGCGELKHLAISGNKI-SGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQ 226

Query: 60  IIELEECQ 67
            +++   +
Sbjct: 227 HLDISGNK 234

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNIC-SLKELYLSKNRFF-SLPASI--NLLSKL 58
           +LL +  L  LD+S      G +P  + N+  SL  L LS N F   +  ++  N  + L
Sbjct: 338 TLLKMRGLKVLDLSFNEF-SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 59  WIIELEECQ 67
             + L+   
Sbjct: 397 QELYLQNNG 405

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 1   LPSLLGLCS-LTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKL 58
                     +  LD+S   L  G IP +IG++  L  L L  N    S+P  +  L  L
Sbjct: 624 TSPTFDNNGSMMFLDMSYNML-SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 9   SLTKLDISDCNL--GEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIEL 63
            +T +D+S   L  G  A+ S + ++  L+ L+LS +      +     + L  ++L
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIP-SDIGNICSLKELYLSKNRFF-SLPASINLLSKL 58
           L SL     L  L++S   L +     S    + SL+ L LS N    +      L    
Sbjct: 119 LTSLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWI 60
             L  L +    +I+      G       N  S+  L +S N     +P  I  +  L+I
Sbjct: 602 EQLNRLSTRNPCNITSRVY-GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660

Query: 61  IEL 63
           + L
Sbjct: 661 LNL 663

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 12/105 (11%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           LP L    SL  LD  D  L    +P    +   LK L +  N+   LP    LL  +  
Sbjct: 95  LPELPA--SLEYLDACDNRLST--LPELPAS---LKHLDVDNNQLTMLPELPALLEYIN- 146

Query: 61  IELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDV 105
              +  Q L  LP+LP+++E + V     L  L    +  +++DV
Sbjct: 147 --ADNNQ-LTMLPELPTSLEVLSVRNN-QLTFLPELPESLEALDV 187

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.7 bits (134), Expect = 7e-09
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 1   LPSLLGLC---SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSK 57
             SLL  C     ++L ++  NL    +P ++     +  L +++N   SLP     L  
Sbjct: 49  AVSLLKECLINQFSELQLNRLNLSS--LPDNLPP--QITVLEITQNALISLPELPASLEY 104

Query: 58  LWIIELEECQRLQSLPQLPSNIEQVQVNG 86
           L   +     RL +LP+LP++++ + V+ 
Sbjct: 105 LDACDN----RLSTLPELPASLKHLDVDN 129

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKE----LYLSKNRFFSLPASINLLS 56
           LP L    SL  LD+S   L    +P+        +E        +NR   +P +I  L 
Sbjct: 175 LPELPE--SLEALDVSTNLLES--LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLD 230

Query: 57  KLWIIELEECQRLQSLPQ 74
               I LE+   L S  +
Sbjct: 231 PTCTIILEDNP-LSSRIR 247

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 6e-07
 Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 20/98 (20%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASI----NLLS 56
           LP L    SL  L + +  L    +P    +   L+ L +S N   SLPA      +   
Sbjct: 155 LPELPT--SLEVLSVRNNQLTF--LPELPES---LEALDVSTNLLESLPAVPVRNHHSEE 207

Query: 57  KLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLS 94
                   E +    +  +P NI            T+ 
Sbjct: 208 TEIFFRCRENR----ITHIPENILS-----LDPTCTII 236

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 12/82 (14%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRF----------FSLPAS 51
            S   L  LT +++ +C      +P  + ++  L+ L ++ NR             L   
Sbjct: 485 LSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 52  INLLSKLWIIELEECQRLQSLP 73
            +   K+ I  +     L+  P
Sbjct: 544 EDTGPKIQIFYMGYNN-LEEFP 564

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 12/97 (12%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDI--GNICSLKELYLSKNRFFSLPASINLLSKLW 59
            +      LT +D+    L    +  D     +  L  + +S N F S P      S+L 
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTS--LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLK 779

Query: 60  IIELEECQRLQS---LPQLPSNIEQVQVNGCASLGTL 93
              +   +  +    L Q P+ I       C SL  L
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITT-----CPSLIQL 811

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 2   PSLLG-LCSLTKLDISDCNLGE------GAIPSDIGNICSLKELYLSKNRFFSLPASINL 54
             L      ++ + +S+  +             +  N   L  + L  N+  SL      
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749

Query: 55  --LSKLWIIELEECQRLQSLPQLPSNIEQVQV 84
             L  L  +++       S P  P N  Q++ 
Sbjct: 750 TTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKA 780

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 6/76 (7%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICS-LKELYLSKNRFFSLPASINL--LSK 57
           L +      LT L +    + E  IP D       ++ L  S N+   +P   N   +  
Sbjct: 588 LEAFGTNVKLTDLKLDYNQIEE--IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 58  LWIIELEECQRLQSLP 73
           +  ++    + + S  
Sbjct: 646 MGSVDFSYNK-IGSEG 660

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 6e-07
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWII 61
                   +    +   NL E    + +  +  L  L    N+   L  +     KL  +
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDL 600

Query: 62  ELEECQRLQSLP 73
           +L+  Q ++ +P
Sbjct: 601 KLDYNQ-IEEIP 611

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 6e-07
 Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 7/92 (7%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIE 62
            L     +T L ++     +G +P  IG +  LK L    +                   
Sbjct: 318 DLDNNGRVTGLSLAGFGA-KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEE------ 370

Query: 63  LEECQRLQSLPQLPSNIEQVQVNGCASLGTLS 94
           L      +   ++  + +++ ++    L    
Sbjct: 371 LTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 13/110 (11%), Positives = 38/110 (34%), Gaps = 12/110 (10%)

Query: 1   LPSLLGLCSLTKLDISDCNLGE-----GAIPSDIGNICSLKELYLSKNRFFSLPASINLL 55
            P +  +   +++ + D  +G        I   I  +  L+ +Y + + F     +++  
Sbjct: 411 NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWE 470

Query: 56  SKLWIIELEECQRLQSLPQLPSNIEQVQV---NGCASLGTLSHALKLCKS 102
                   +  ++ ++     SN++ +       C ++  L   L     
Sbjct: 471 DAN----SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 1   LPSLLGLCS-LTKLDIS-----DCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINL 54
            P+     S L    I      + N      P+ I    SL +L +  N    +   +  
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL-- 825

Query: 55  LSKLWIIELEECQRLQ-SLPQLPSNIEQ 81
             +L+I+++ +   +   +  +   IE 
Sbjct: 826 TPQLYILDIADNPNISIDVTSVCPYIEA 853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 1   LPSLLG-LCSLTKLDISDCNL--------GEGAIPSDIGNICSLKELYLSKNRFFSLPAS 51
           LP  L  L  L  L+I+                +  D      ++  Y+  N     PAS
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566

Query: 52  INL--LSKLWIIELEECQRLQSLP 73
            +L  + KL +++    + ++ L 
Sbjct: 567 ASLQKMVKLGLLDCVHNK-VRHLE 589

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 9/102 (8%)

Query: 1   LPSLLGLCSLTKL---DISDCNLG----EGAIPSDIGNICSLKELYLSKNRFFSLPASI- 52
           +P++    S+  +   D S   +G      +   D     +   + LS N     P  + 
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

Query: 53  NLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLS 94
              S +  I L     + S+P+     +         L T+ 
Sbjct: 694 ATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTID 734

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 10/80 (12%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP--------ASIN 53
                  + + + +S   + +            +  + LS N   S+P         +  
Sbjct: 667 MDDYKGINASTVTLSYNEI-QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 54  LLSKLWIIELEECQRLQSLP 73
               L  I+L   + L SL 
Sbjct: 726 NTYLLTTIDLRFNK-LTSLS 744

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 55.6 bits (135), Expect = 5e-09
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 16/86 (18%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRF-FSLPASINLLSKLW 59
           +P      +L  +D+S   L EG      G+  + ++++L+KN   F L   + L   L 
Sbjct: 190 IPPTFANLNLAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLN 247

Query: 60  II-------------ELEECQRLQSL 72
            +              L + + L SL
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSL 273

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 1   LPSLLGLCS-LTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKL 58
           +P  +   + L  L I+  N+  GAIP  +  I +L  L  S N    +LP SI+ L  L
Sbjct: 93  IPPAIAKLTQLHYLYITHTNV-SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 59  WIIEL 63
             I  
Sbjct: 152 VGITF 156

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWI 60
            SL  L  L  L I   N   G IP  I  +  L  LY++      ++P  ++ +  L  
Sbjct: 70  SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129

Query: 61  IEL 63
           ++ 
Sbjct: 130 LDF 132

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 1   LPSLLGLCS-LTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKL 58
           +P  L     L  LD S   L  G +P  I ++ +L  +    NR   ++P S    SKL
Sbjct: 117 IPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.1 bits (118), Expect = 8e-07
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 3   SLLGLCSLTKLDISDCNL-GEGAIPSDIGNICSLKELYLSKNRFFS--LPASINLLSKLW 59
           +      +  LD+S  NL     IPS + N+  L  LY+         +P +I  L++L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 60  IIEL 63
            + +
Sbjct: 105 YLYI 108

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 16/87 (18%)

Query: 1   LPSLLGLC-SLTKLDISDCNLGEGAIPSDIGNICSLKE-LYLSKNRFF-SLPASI-NL-L 55
           LP  +    +L  +      +  GAIP   G+   L   + +S+NR    +P +  NL L
Sbjct: 141 LPPSISSLPNLVGITFDGNRI-SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199

Query: 56  SKLWI----------IELEECQRLQSL 72
           + + +          +     +  Q +
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKI 226

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRF 45
           L  +    +L  LD+ +  +  G +P  +  +  L  L +S N  
Sbjct: 237 LGKVGLSKNLNGLDLRNNRI-YGTLPQGLTQLKFLHSLNVSFNNL 280

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           LP+L     L +L  S  +L E  +P    N   LK+L++  N     P     +  L  
Sbjct: 332 LPALPP--RLERLIASFNHLAE--VPELPQN---LKQLHVEYNPLREFPDIPESVEDL-- 382

Query: 61  IELEECQRLQSLPQLPSNIEQVQVNG 86
                   L  +P+LP N++Q+ V  
Sbjct: 383 ---RMNSHLAEVPELPQNLKQLHVET 405

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           LP L    SL  +   +  L E     ++ N+  L  +Y   N   +LP     L  L +
Sbjct: 210 LPDLPL--SLESIVAGNNILEE---LPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 264

Query: 61  IELEECQRLQSLPQLPSNIEQ 81
            +      L  LP+LP ++  
Sbjct: 265 RDN----YLTDLPELPQSLTF 281

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 9   SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR 68
              +L++++  L    +P    +   L+ L  S N    LP     L  L +        
Sbjct: 72  QAHELELNNLGLSS--LPELPPH---LESLVASCNSLTELPELPQSLKSLLVDNN----N 122

Query: 69  LQSLPQLPSNIEQVQVNGC 87
           L++L  LP  +E + V+  
Sbjct: 123 LKALSDLPPLLEYLGVSNN 141

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 24/123 (19%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           LP L    SL  +   +  L E  +P ++ N+  L  +Y   N    LP     L  +  
Sbjct: 168 LPDLPP--SLEFIAAGNNQLEE--LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVA 222

Query: 61  I--------ELEECQRLQ----------SLPQLPSNIEQVQVNGCASLGTLSHALKLCKS 102
                    EL+    L           +LP LP ++E + V     L  L    +    
Sbjct: 223 GNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN-YLTDLPELPQSLTF 281

Query: 103 IDV 105
           +DV
Sbjct: 282 LDV 284

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           L  L    +L  L+ S   +    +     +   L+EL +S N+   LPA    L +L  
Sbjct: 292 LSELPP--NLYYLNASSNEIRS--LCDLPPS---LEELNVSNNKLIELPALPPRLERLI- 343

Query: 61  IELEECQRLQSLPQLPSNIEQVQVNGC 87
                   L  +P+LP N++Q+ V   
Sbjct: 344 --ASFNH-LAEVPELPQNLKQLHVEYN 367

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 16/117 (13%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWI 60
           P  +    L +      NL E  +P +  N+ S  E Y + + +  + P       ++ +
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTE--MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 61  IELEEC------------QRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDV 105
             L +C              L SLP+LP ++E +  +   SL  L    +  KS+ V
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCN-SLTELPELPQSLKSLLV 118

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 24/94 (25%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGN----------------ICSLKELYLSKNR 44
           +P L    +L +L +    L E   P    +                  +LK+L++  N 
Sbjct: 352 VPELPQ--NLKQLHVEYNPLRE--FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407

Query: 45  FFSLPASINLLSKLWIIELEECQRLQSLPQLPSN 78
               P     +  L +      +R+    +    
Sbjct: 408 LREFPDIPESVEDLRM----NSERVVDPYEFAHE 437

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLW- 59
           L  L     L  L +S+  L +  +P ++ N   LK + +  N    LP     L  +  
Sbjct: 126 LSDLPP--LLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 180

Query: 60  ----IIELEECQRLQSLPQL 75
               + EL E Q L  L  +
Sbjct: 181 GNNQLEELPELQNLPFLTAI 200

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 20/120 (16%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASI-------- 52
           LP L    SL  L++ D  L +  +P    ++  L       +    LP ++        
Sbjct: 252 LPDLPP--SLEALNVRDNYLTD--LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 307

Query: 53  ------NLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSIDVE 106
                 +L   L  + +   + L  LP LP  +E++  +    L  +    +  K + VE
Sbjct: 308 EIRSLCDLPPSLEELNVSNNK-LIELPALPPRLERLIASFN-HLAEVPELPQNLKQLHVE 365

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 3/96 (3%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           +   +    L  LD+S   L    +  +  +   +  + L  N+   +  ++     L  
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241

Query: 61  IELEECQ-RLQSLPQLPSNIEQVQVNGCASLGTLSH 95
            +L        +L    S  ++VQ     ++  L+ 
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIE 62
                  +  LD+    +          +  +L+ L L  N  + +   +   +KL  ++
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLD 197

Query: 63  LEECQRLQSLPQLPSNIEQVQVNGCASLGTLS 94
           L   +    L  +    +       A +  +S
Sbjct: 198 LSSNK----LAFMGPEFQS-----AAGVTWIS 220

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 12/101 (11%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIE 62
                 ++ +LD+S   L      +D+     L+ L LS N  +     +  LS L  ++
Sbjct: 29  LRQSAWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLD 86

Query: 63  LEECQRLQSLPQLPS---------NIEQVQVNGCASLGTLS 94
           L     +Q L   PS         NI +V  +       + 
Sbjct: 87  LNNNY-VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIY 126

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 17/83 (20%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASI-------- 52
              L  L +L  LD+++  +       ++    S++ L+ + N    +  S         
Sbjct: 73  TLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSCSRGQGKKNIY 126

Query: 53  ---NLLSKLWIIELEECQRLQSL 72
              N ++ L  ++     R+Q L
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYL 149

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 7e-08
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 3/96 (3%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           +   +    L  LD+S   L    +  +  +   +  + L  N+   +  ++     L  
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241

Query: 61  IELEECQ-RLQSLPQLPSNIEQVQVNGCASLGTLSH 95
            +L        +L    S  ++VQ     ++  L+ 
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 12/101 (11%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIE 62
                 ++ +LD+S   L      +D+     L+ L LS N  +     +  LS L  ++
Sbjct: 29  LRQSAWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLD 86

Query: 63  LEECQRLQSLPQLPS---------NIEQVQVNGCASLGTLS 94
           L     +Q L   PS         NI +V  +       + 
Sbjct: 87  LNNNY-VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIY 126

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIE 62
                  +  LD+    +          +  +L+ L L  N  + +   +   +KL  ++
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLD 197

Query: 63  LEECQRLQSLPQLPSNIEQVQVNGCASLGTLS 94
           L   +    L  +    +       A +  +S
Sbjct: 198 LSSNK----LAFMGPEFQ-----SAAGVTWIS 220

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINL----LS-- 56
            L     L  L++S   L E     D+ ++ +L+ L L+ N    L    ++     +  
Sbjct: 53  DLAPFTKLELLNLSSNVLYE---TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109

Query: 57  KLWIIELEECQRLQSLPQLPSN-IEQVQVNGCASLGTLSH 95
            +  +     Q  +++  L +N I  ++         + +
Sbjct: 110 NISRVSCSRGQGKKNI-YLANNKITMLRDLDEGCRSRVQY 148

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 17/83 (20%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASI-------- 52
              L  L +L  LD+++  +       ++    S++ L+ + N    +  S         
Sbjct: 73  TLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSCSRGQGKKNIY 126

Query: 53  ---NLLSKLWIIELEECQRLQSL 72
              N ++ L  ++     R+Q L
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYL 149

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 14/83 (16%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKL-- 58
           + +L  L +L +L +++ N+ +    S + N+  +  L L  N   S  + ++ ++ L  
Sbjct: 103 ISALQNLTNLRELYLNEDNISD---ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159

Query: 59  ---------WIIELEECQRLQSL 72
                     +  +     L SL
Sbjct: 160 LTVTESKVKDVTPIANLTDLYSL 182

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINL--LSKL 58
           +  L  L  L  L +++  L        IG + +L  L+LS+N    +    +L  +   
Sbjct: 280 ISVLNNLSQLNSLFLNNNQL-GNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSA 338

Query: 59  WI 60
             
Sbjct: 339 DF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           +  L  L  LT L I    +      S + N+ +L+ELYL+++    +   +  L+K++ 
Sbjct: 81  ISPLSNLVKLTNLYIGTNKI---TDISALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136

Query: 61  IELEECQRLQSLPQL 75
           + L     L  L  L
Sbjct: 137 LNLGANHNLSDLSPL 151

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           +  +  +  L  L I +  + +    S + N+  L  L +  N+   + A +  L+KL +
Sbjct: 214 ITPVANMTRLNSLKIGNNKITD---LSPLANLSQLTWLEIGTNQISDINA-VKDLTKLKM 269

Query: 61  IELEECQRLQSLPQL 75
           + +   Q +  +  L
Sbjct: 270 LNVGSNQ-ISDISVL 283

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 10/101 (9%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           +     L    +  +   ++ +         + S+ +L ++  +  S+   I  L+ L  
Sbjct: 15  IFPDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKVASIQG-IEYLTNLEY 70

Query: 61  IELEECQ--RLQSLPQLPS----NIEQVQVNGCASLGTLSH 95
           + L   Q   +  L  L       I   ++   ++L  L++
Sbjct: 71  LNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTN 111

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKL 58
            +  L +L +L+++   +    +P    N+ +L+ L LS N+  S+    + +L ++
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRF--FSLPASINLLSKLW 59
            +  GL SL KL   + NL        IG++ +LKEL ++ N    F LP   + L+ L 
Sbjct: 94  GAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 60  IIELEECQ-------RLQSLPQLPSN 78
            ++L   +        L+ L Q+P  
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLL 178

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 1   LPSLLGLCSLTKLDISDCNLG-EGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLW 59
             S + L SL  LD+S   L  +G          SLK L LS N   ++ ++   L +L 
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399

Query: 60  IIELEECQ 67
            ++ +   
Sbjct: 400 HLDFQHSN 407

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWI 60
            S      L  LD+S C + +        ++  L  L L+ N   SL   + + LS L  
Sbjct: 46  YSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 61  IELEECQRLQSLP 73
           +   E   L SL 
Sbjct: 105 LVAVETN-LASLE 116

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWII 61
              GL SL  L ++  +  E  +P     + +L  L LS+ +   L P + N LS L ++
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 62  EL 63
            +
Sbjct: 500 NM 501

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWI 60
            +   L  L+ L ++   + +         + SL++L   +    SL    I  L  L  
Sbjct: 70  GAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 61  IELEECQRLQSLP 73
           + +     +QS  
Sbjct: 129 LNVAHNL-IQSFK 140

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 9  SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQ 67
          S   LD+S   L          +   L+ L LS+    ++   +   LS L  + L    
Sbjct: 29 STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 68 RLQSLP 73
           +QSL 
Sbjct: 88 -IQSLA 92

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 6/97 (6%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA----SINLLSK 57
           P       L KL + +       + + I  +  L+   L    F +         + L  
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 58  LWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLS 94
           L  + +EE  RL  L     +I  +  N   ++ + S
Sbjct: 254 LCNLTIEEF-RLAYLDYYLDDIIDLF-NCLTNVSSFS 288

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSD-IGNICSLKELYLSKNRFFSLPASINLLSKLW 59
             S + L SL  LD+S   L      S       SLK L LS N   ++ ++   L +L 
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399

Query: 60  IIELEECQRLQSLP 73
            ++ +    L+ + 
Sbjct: 400 HLDFQHSN-LKQMS 412

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 6   GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASI-NLLSKLWIIELE 64
           GL SL  L ++  +  E  +P     + +L  L LS+ +   L  +  N LS L ++ + 
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502

Query: 65  ECQRLQSLP 73
             Q L+S+P
Sbjct: 503 SNQ-LKSVP 510

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 5/73 (6%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINL--LSKLWI 60
           S  G  SL  LD+S   +    + S+   +  L+ L    +    +        L  L  
Sbjct: 368 SDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 61  IELEECQRLQSLP 73
           +++      +   
Sbjct: 426 LDISHTH-TRVAF 437

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDI-GNICSLKELYLSKNRFFSLPASI-NLLSKLWI 60
           +  GL +L  L++ D  L    IP+     +  LKEL+L  N   S+P+   N +  L  
Sbjct: 107 AFNGLANLNTLELFDNRLTT--IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164

Query: 61  IELEECQRLQSLP 73
           ++L E +RL  + 
Sbjct: 165 LDLGELKRLSYIS 177

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           +P+L GL SLT LDIS     +  + + I  +  +  + LS N   +    +  L +L  
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163

Query: 61  IELEECQ-----RLQSLPQL 75
           + ++         ++  P+L
Sbjct: 164 LNIQFDGVHDYRGIEDFPKL 183

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 6   GLCSLTKLDISDCNLGEGAIPSDI-GNICSLKELYLSKNRFFSLPASI-NLLSKLWIIEL 63
           GL SL  L++ D  L    IPS     +  L+EL+L  N   S+P+   N +  L  ++L
Sbjct: 121 GLASLNTLELFDNWLTV--IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178

Query: 64  EECQRLQSLP 73
            E ++L+ + 
Sbjct: 179 GELKKLEYIS 188

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIE 62
            LL L +LT LDIS        +P        ++ L LS      +     +   L +++
Sbjct: 382 ILLTLKNLTSLDISRNTFHP--MPDSCQWPEKMRFLNLSSTGIRVVKT--CIPQTLEVLD 437

Query: 63  LEECQRLQSLPQLPSNIEQVQVNGC 87
           +     L S       ++++ ++  
Sbjct: 438 VSNNN-LDSFSLFLPRLQELYISRN 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           +  +  L +LT L +   N+ +    S + ++  L+ L+   N+   +  S+  L+ +  
Sbjct: 302 ISPISNLKNLTYLTLYFNNISD---ISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINW 357

Query: 61  IELEECQRLQSLPQLP--SNIEQVQVNGC 87
           +     Q +  L  L   + I Q+ +N  
Sbjct: 358 LSAGHNQ-ISDLTPLANLTRITQLGLNDQ 385

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINL--LSKL 58
           + +L  L +LT LD+++  +      + +  +  L EL L  N+  ++     L  L+ L
Sbjct: 236 IGTLASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 292

Query: 59  W--------IIELEECQRLQSL 72
                    I  +   + L  L
Sbjct: 293 ELNENQLEDISPISNLKNLTYL 314

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           L  L  L +L +LDIS   + +    S +  + +L+ L  + N+   +   + +L+ L  
Sbjct: 170 LKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP-LGILTNLDE 225

Query: 61  IELEECQRLQSLPQL 75
           + L   Q L+ +  L
Sbjct: 226 LSLNGNQ-LKDIGTL 239

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           +  L  L  L  + +++  + +    + + N+ +L  L L  N+   +   +  L+ L  
Sbjct: 83  ITPLKNLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNR 138

Query: 61  IELEECQ--RLQSLPQLPS 77
           +EL       + +L  L S
Sbjct: 139 LELSSNTISDISALSGLTS 157

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
             S   L  +T L      +        +  + +L ++  S N+   +   +  L+KL  
Sbjct: 39  TVSQTDLDQVTTLQADRLGI---KSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVD 94

Query: 61  IELEECQ--RLQSLPQLPS 77
           I +   Q   +  L  L +
Sbjct: 95  ILMNNNQIADITPLANLTN 113

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIE 62
             + +  L +L IS+  L    +      I +LK L LS N    +  +     +L  + 
Sbjct: 273 PFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 330

Query: 63  LEECQRLQSLP 73
           L+    + +L 
Sbjct: 331 LDHNS-IVTLK 340

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 8  CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEEC 66
           S    D S   L +  +P D+    ++  L L+ N+   L  A+    S+L  +++   
Sbjct: 4  VSHEVADCSHLKLTQ--VPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 67 QRLQSLP 73
            +  L 
Sbjct: 60 T-ISKLE 65

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWII 61
           +     +LT+L +   ++ +    +      +L  L LS N   S    +   L  L  +
Sbjct: 92  TFAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150

Query: 62  ELEECQRLQSLP 73
            L   + +Q+L 
Sbjct: 151 LLSNNK-IQALK 161

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWII 61
           +   L  L  LD+    +G+     +   + ++ E+YLS N++  L   S  L+  L  +
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 62  ELEECQRLQSLPQLPSNIEQVQVNGCASLGTLS 94
            L     L+++   PS           +L  L 
Sbjct: 460 MLRRVA-LKNVDSSPSPF-----QPLRNLTILD 486

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRF-FSLPASINL---LSKL 58
            +    SL KL++S   + +   P     I  L  L+L+  +   SL   + L    + +
Sbjct: 166 DIFANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224

Query: 59  WIIELEECQRLQSLP 73
             + L   Q L +  
Sbjct: 225 RNLSLSNSQ-LSTTS 238

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 5   LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIEL 63
           L   +LT LD+S  NL           +  L+  +L  N    L   S++ L  +  + L
Sbjct: 245 LKWTNLTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 64  EECQRLQSLPQLPSNIEQVQVNGCASLGTLSH 95
           +     QS+    +++ ++       L  L H
Sbjct: 304 KRSFTKQSISL--ASLPKIDDFSFQWLKCLEH 333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 3/72 (4%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWII 61
               L  L  L++    L             +L EL+L  N    +          L  +
Sbjct: 68  LCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126

Query: 62  ELEECQRLQSLP 73
           +L     L S  
Sbjct: 127 DLSHNG-LSSTK 137

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 2   PSLLGLCSLTKLDISDCNLGEGAIPSDIGNIC--SLKELYLSKNRFFSL-PASINLLSKL 58
            + + L +L +L +S+  + +     ++      SLK+L LS N+     P   + + +L
Sbjct: 139 GTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197

Query: 59  WIIELEECQRLQSLPQ 74
           + + L   Q   SL +
Sbjct: 198 FGLFLNNVQLGPSLTE 213

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 6   GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEE 65
               LT+L++    L    +  D G +  L  L LS N+  SLP     L  L ++++  
Sbjct: 53  PYTRLTQLNLDRAELT--KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109

Query: 66  CQRLQSLP 73
            + L SLP
Sbjct: 110 NR-LTSLP 116

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASI-NLLSKLW 59
           L     L  L  LD+S   L   ++P     + +L  L +S NR  SLP      L +L 
Sbjct: 70  LQVDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 60  IIELEECQRLQSLP 73
            + L+  + L++LP
Sbjct: 128 ELYLKGNE-LKTLP 140

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/114 (15%), Positives = 37/114 (32%), Gaps = 23/114 (20%)

Query: 2   PSLLGLCSLTKLDISDCNLG-EGAI-----------PSDIGNICSLKELYLSKNRFFSLP 49
             L     L  L + +  LG +                   N   L+ +   +NR  +  
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-- 173

Query: 50  ASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSI 103
            S+   +K      +  + L ++ ++  N   ++  G   L  L   L  C+ +
Sbjct: 174 GSMKEWAKT----FQSHRLLHTV-KMVQN--GIRPEGIEHL--LLEGLAYCQEL 218

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 12/107 (11%)

Query: 3   SLLGLCSLTKLDISDCNLG-EGAIP--SDIGNICSLKELYLSKNRFFSLPASI---NLLS 56
           +LL    L  + +SD   G     P    +     L+ LYL  N       +     L  
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148

Query: 57  KLWIIELEECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSI 103
                + +    L+S+     N  +++              +  + +
Sbjct: 149 LAVNKKAKNAPPLRSI-ICGRN--RLENGSMKEWA---KTFQSHRLL 189

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASI-NLLSKLWII 61
             LGL SL  L ++  +  +  + +   N  +L  L LSK +   +   + + L +L ++
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 62  ELEECQRLQSLP 73
            +     L  L 
Sbjct: 503 NMSHNN-LLFLD 513

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRF--FSLPASINLLSKLWI 60
           S  GL SL  L   +  L        IG + +LK+L ++ N      LPA  + L+ L  
Sbjct: 99  SFSGLTSLENLVAVETKL-ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157

Query: 61  IELEECQRLQSLP 73
           ++L     +Q++ 
Sbjct: 158 VDLSYNY-IQTIT 169

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 1  LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLW 59
          L   + +         D  L +  +P DI +  S K + LS N    L + S +  S+L 
Sbjct: 4  LNPCIEVVPNITYQCMDQKLSK--VPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQ 59

Query: 60 IIELEECQRLQSLP 73
           ++L  C+ ++++ 
Sbjct: 60 WLDLSRCE-IETIE 72

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 10/50 (20%), Positives = 24/50 (48%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASI 52
            +  L +L KL+++   +    +P+   N+ +L  + LS N   ++  + 
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDI-GNICSLKELYLSKNRFFSLPASINL--LSKLW 59
           +  GL  L +L +  C L +  +      N+ +L  L LSKN+  SL    +   L+ L 
Sbjct: 92  AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151

Query: 60  IIELEECQRLQSLP 73
            I+    Q +  + 
Sbjct: 152 SIDFSSNQ-IFLVC 164

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDI-GNICSLKELYLSKNRFFSLPASINLLSKLWII 61
               L  LTKL +S   L      S       SLK L LS N   ++ ++   L +L  +
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106

Query: 62  ELEECQRLQSLPQ 74
           + +    L+ + +
Sbjct: 107 DFQHSN-LKQMSE 118

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 12/103 (11%)

Query: 6   GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEE 65
            + +L  LD+S  +L    +  +      L+ LYL  N   +L   ++    L  + L  
Sbjct: 293 PIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 348

Query: 66  CQRLQ--SLPQLPSNIEQVQVNG----CASLGTLSHALKLCKS 102
                  SL  L  N+ +  V+     C     L H L  CK 
Sbjct: 349 -NDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLC-CKE 389

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIE 62
             + +  L +L IS+  L    +      I +LK L LS N    +  +     +L  + 
Sbjct: 267 PFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324

Query: 63  LEECQRLQSLP 73
           L+    + +L 
Sbjct: 325 LDHNS-IVTLK 334

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 6   GLCSLTKLDISDCNLGEGAIPSDI-GNICSLKELYLSKNRFFSLPASI-NLLSKLWIIEL 63
            L +L  L ++D  L   A+P  +   + +L EL L +N+  SLP  + + L+KL  + L
Sbjct: 83  ELKNLETLWVTDNKLQ--ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140

Query: 64  EECQRLQSLP 73
              + LQSLP
Sbjct: 141 GYNE-LQSLP 149

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 14/99 (14%)

Query: 8   CSLTKLDISDCNLGE---GAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELE 64
           C L  L +  C +       +   + +  SL+EL L  N+       +  L       L 
Sbjct: 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL--GDVGMAELCPGL---LH 253

Query: 65  ECQRLQSLPQLPSNIEQVQVNGCASLGTLSHALKLCKSI 103
              RL++L  +      +   GC  L      L+  +S+
Sbjct: 254 PSSRLRTL-WIWEC--GITAKGCGDLCR---VLRAKESL 286

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 3   SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIE 62
              GL ++  +++    L          +   L  L +S+ +   +P   +L   L  + 
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLNELH 199

Query: 63  LEECQRLQSLPQ 74
           L+  + +Q++  
Sbjct: 200 LDHNK-IQAIEL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.1 bits (93), Expect = 8e-04
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
           L SL  L  L  L +    + +  I + + ++  L+ LYL  N+   +   ++ L+KL  
Sbjct: 102 LSSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDT 157

Query: 61  IELEECQ--RLQSLPQLPSNIE-QVQVNGCASLGTLSHALKL 99
           + LE+ Q   +  L  L       +  N  + L  L+    L
Sbjct: 158 LSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNL 199

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 6   GLCSLTKLDISDCNLGEGAIPSDI-GNICSLKELYLSKNRFFSLPASI-NLLSKLWIIEL 63
               L  LD+S C +    I      ++  L  L L+ N   SL     + LS L  +  
Sbjct: 50  SFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 64  EECQRLQSLP 73
            E   L SL 
Sbjct: 108 VETN-LASLE 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	341
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.1
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.1
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.03
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.01
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.01
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.99
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.99
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.97
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.96
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.94
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.94
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.92
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.92
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.91
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.9
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.9
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.87
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.85
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.84
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.83
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.81
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.8
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.79
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.79
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.78
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.78
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.76
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.76
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.75
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.74
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.74
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.74
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.74
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.74
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.74
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.74
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.74
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.74
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.73
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.72
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.72
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.71
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.69
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.69
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.68
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.67
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.67
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.66
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.66
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.65
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.65
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.65
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.64
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.64
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.64
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.64
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.63
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.63
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.63
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.62
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.62
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.62
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.6
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.6
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.6
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.59
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.59
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.59
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.57
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.56
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.56
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.56
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.55
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.55
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.54
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.53
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.51
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.5
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.5
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.49
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.4
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.36
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.34
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.33
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.26
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.23
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.1
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.98
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.59
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.23
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.91
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.89
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.87
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.81
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.77
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.33
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.3
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.0
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.82
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.72
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.7
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.26
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	94.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.7
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.46
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	89.3
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	88.78
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	88.1
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	87.41
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	86.18
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	86.13

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.26  E-value=7.8e-12  Score=118.27  Aligned_cols=107  Identities=21%  Similarity=0.309  Sum_probs=59.9

Q ss_pred             CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC---Cccccccc
Q 039899            7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL---PSNIEQVQ   83 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~   83 (341)
                      +++|+.|+|++|.+.  .+|..++.+++|+.|+|++|.++.+|..++.+++|+.|+|++|.+.+.+|..   .++|+.|+
T Consensus       182 l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             STTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             CCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence            555555555555554  2565566666666666666666666666666666666666666666655542   24555566


Q ss_pred             cccccccCcchhhhHHHHhhchhccCCCCcccc
Q 039899           84 VNGCASLGTLSHALKLCKSIDVEVSKPIPHLSI  116 (341)
Q Consensus        84 ~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~  116 (341)
                      +.+|..+..++.....+ ..++.+++++|.+.+
T Consensus       260 L~~n~~~~~~p~~~~~l-~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          260 LKDCSNLLTLPLDIHRL-TQLEKLDLRGCVNLS  291 (328)
T ss_dssp             CTTCTTCCBCCTTGGGC-TTCCEEECTTCTTCC
T ss_pred             CCCCCchhhcchhhhcC-CCCCEEeCCCCCchh
Confidence            65555444443221111 225566666666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.25  E-value=5.9e-12  Score=119.12  Aligned_cols=108  Identities=22%  Similarity=0.339  Sum_probs=86.1

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC-------
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL-------   75 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l-------   75 (341)
                      .+.++++|++|+|++|.+.  .+|..++.+++|++|+|++|.++.+|..++++++|+.|+|++|+.++.+|..       
T Consensus        99 ~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~  176 (328)
T 4fcg_A           99 QAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS  176 (328)
T ss_dssp             CGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred             hhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence            4777899999999999996  4999999999999999999999999999999999999999999999988863       


Q ss_pred             -----CccccccccccccccCcchhhhHHHHh--hchhccCCCCcccc
Q 039899           76 -----PSNIEQVQVNGCASLGTLSHALKLCKS--IDVEVSKPIPHLSI  116 (341)
Q Consensus        76 -----p~sL~~L~~~~c~sL~~l~~~p~~l~~--~l~~l~l~~n~~~~  116 (341)
                           .++|+.|+++++ .++.+   |..+..  .++.+++++|.+.+
T Consensus       177 ~~~~~l~~L~~L~L~~n-~l~~l---p~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          177 GEHQGLVNLQSLRLEWT-GIRSL---PASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             CCEEESTTCCEEEEEEE-CCCCC---CGGGGGCTTCCEEEEESSCCCC
T ss_pred             hhhccCCCCCEEECcCC-CcCcc---hHhhcCCCCCCEEEccCCCCCc
Confidence                 557777777665 33333   333322  36666777777664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.17  E-value=3.6e-11  Score=126.10  Aligned_cols=69  Identities=29%  Similarity=0.387  Sum_probs=36.0

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCC
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLP   73 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP   73 (341)
                      +.++++|+.|+|++|++. |.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|++++|++.|.+|
T Consensus       486 l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          486 LSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             GGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred             HhcCCCCCEEEccCCccC-CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence            344445555555555554 445555555555555555555555 455555555555555555555555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.14  E-value=1.2e-11  Score=115.95  Aligned_cols=138  Identities=17%  Similarity=0.241  Sum_probs=97.3

Q ss_pred             CCCCCCCCcEEeccC-CCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCCCC---Cc
Q 039899            3 SLLGLCSLTKLDISD-CNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLPQL---PS   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~-~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~   77 (341)
                      ++.++++|++|+|++ |++. +.+|..++.+++|++|+|++|.++ .+|..+.++++|+.|+|++|++.+.+|..   .+
T Consensus        71 ~l~~l~~L~~L~L~~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  149 (313)
T 1ogq_A           71 SLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEE-SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             hHhCCCCCCeeeCCCCCccc-ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence            577889999999995 8887 789999999999999999999998 88989999999999999999988777753   35


Q ss_pred             cccccccccccccCcchhhhHHHHhhchhccCCCCccccccCCC--CccccchhccCCCeEEEEcCC
Q 039899           78 NIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGS--EISKCFRYQKEDSAMAVTMPL  142 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg~--~iP~wf~~~~~g~si~~~Lp~  142 (341)
                      +|+.|++.++.--..++.....+...++.+++++|.+.+.+|..  ..+ .-.....++.++..+|.
T Consensus       150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~  215 (313)
T 1ogq_A          150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV  215 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG
T ss_pred             CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH
Confidence            67777776653211222222222235778888888888766643  111 11223455666655443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.10  E-value=1.3e-10  Score=122.01  Aligned_cols=98  Identities=28%  Similarity=0.279  Sum_probs=84.7

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCCCCCccccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQ   81 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~   81 (341)
                      .+..+++|+.|||++|+++ |.+|..++.+++|+.|+|++|.++ .+|.+|++|++|+.|+|++|++.|.+|.....+  
T Consensus       627 ~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l--  703 (768)
T 3rgz_A          627 TFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL--  703 (768)
T ss_dssp             SCSSSBCCCEEECCSSCCB-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC--
T ss_pred             hhhccccccEEECcCCccc-ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC--
Confidence            5778899999999999999 999999999999999999999999 999999999999999999999999777533322  


Q ss_pred             cccccccccCcchhhhHHHHhhchhccCCCCccccccCCCCc
Q 039899           82 VQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGSEI  123 (341)
Q Consensus        82 L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg~~i  123 (341)
                            ++              ++.+++++|.++|.+|....
T Consensus       704 ------~~--------------L~~L~ls~N~l~g~iP~~~~  725 (768)
T 3rgz_A          704 ------TM--------------LTEIDLSNNNLSGPIPEMGQ  725 (768)
T ss_dssp             ------CC--------------CSEEECCSSEEEEECCSSSS
T ss_pred             ------CC--------------CCEEECcCCcccccCCCchh
Confidence                  22              45678999999998886543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.10  E-value=7.5e-11  Score=110.58  Aligned_cols=83  Identities=27%  Similarity=0.366  Sum_probs=54.4

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCCC----CCc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLPQ----LPS   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~----lp~   77 (341)
                      ++.++++|++|+|++|++. +.+|..++.+++|++|+|++|.++ .+|..++.+++|+.|+|++|++.+.+|.    +++
T Consensus        96 ~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  174 (313)
T 1ogq_A           96 AIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK  174 (313)
T ss_dssp             GGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCT
T ss_pred             hHhcCCCCCEEECcCCeeC-CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhh
Confidence            3566677777777777776 566777777777777777777766 6666677777777777777776655553    233


Q ss_pred             ccccccccc
Q 039899           78 NIEQVQVNG   86 (341)
Q Consensus        78 sL~~L~~~~   86 (341)
                      .|+.|++++
T Consensus       175 ~L~~L~L~~  183 (313)
T 1ogq_A          175 LFTSMTISR  183 (313)
T ss_dssp             TCCEEECCS
T ss_pred             cCcEEECcC
Confidence            555555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.07  E-value=6.1e-11  Score=121.91  Aligned_cols=136  Identities=13%  Similarity=0.099  Sum_probs=102.2

Q ss_pred             CCCCCCCCcEEeccCCCCCCCC-----------------CCcccc--CCCCCcEEEccCCCCC-CCChhccCCCCccEEE
Q 039899            3 SLLGLCSLTKLDISDCNLGEGA-----------------IPSDIG--NICSLKELYLSKNRFF-SLPASINLLSKLWIIE   62 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~-----------------iP~~i~--~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~   62 (341)
                      +++++++|++|+|++|.+. |.                 +|..++  .+++|++|+|++|.+. .+|..++++++|+.|+
T Consensus       201 ~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSPFV-AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN  279 (636)
T ss_dssp             GGGGCTTCCEEEEESCCCC-GGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred             HHhcccCCCEEECcCCccc-cccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence            4788999999999999997 75                 999999  9999999999999987 8999999999999999


Q ss_pred             cCCcc-ccc-cCCCC---------CccccccccccccccCcchhhhH--HHHh--hchhccCCCCccccccCCC-Ccccc
Q 039899           63 LEECQ-RLQ-SLPQL---------PSNIEQVQVNGCASLGTLSHALK--LCKS--IDVEVSKPIPHLSIVVPGS-EISKC  126 (341)
Q Consensus        63 Ls~c~-~l~-~lP~l---------p~sL~~L~~~~c~sL~~l~~~p~--~l~~--~l~~l~l~~n~~~~~lPg~-~iP~w  126 (341)
                      |++|+ +.+ .+|.-         .++|+.|+++++ .++.   +|.  .+..  .++.+++++|.+.|.+|.- ..+..
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~---ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L  355 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT---FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL  355 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS---CCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEE
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCc---cCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCC
Confidence            99998 776 67642         167888888776 3333   343  3332  4788889999988877721 23333


Q ss_pred             chhccCCCeEEEEcCCCC
Q 039899          127 FRYQKEDSAMAVTMPLFL  144 (341)
Q Consensus       127 f~~~~~g~si~~~Lp~~~  144 (341)
                      -.....++.++ .+|...
T Consensus       356 ~~L~L~~N~l~-~lp~~l  372 (636)
T 4eco_A          356 ASLNLAYNQIT-EIPANF  372 (636)
T ss_dssp             SEEECCSSEEE-ECCTTS
T ss_pred             CEEECCCCccc-cccHhh
Confidence            33345666666 666543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.03  E-value=5.5e-10  Score=102.36  Aligned_cols=83  Identities=22%  Similarity=0.223  Sum_probs=49.7

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Cc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PS   77 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~   77 (341)
                      +.+..+++|+.|+|++|.+. + + +.++.+++|+.|+|++|.++.+|. .++.+++|+.|+|++|++.+..|..   .+
T Consensus        57 ~~l~~l~~L~~L~l~~n~l~-~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  133 (272)
T 3rfs_A           57 QGIQYLPNVRYLALGGNKLH-D-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT  133 (272)
T ss_dssp             TTGGGCTTCCEEECTTSCCC-C-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             cccccCCCCcEEECCCCCCC-C-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC
Confidence            34556666777777777665 2 3 356666677777777776665554 3566666777777766665433322   24


Q ss_pred             cccccccccc
Q 039899           78 NIEQVQVNGC   87 (341)
Q Consensus        78 sL~~L~~~~c   87 (341)
                      +|+.|++.++
T Consensus       134 ~L~~L~L~~n  143 (272)
T 3rfs_A          134 NLTYLNLAHN  143 (272)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEECCCC
Confidence            5566666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.01  E-value=3e-10  Score=106.23  Aligned_cols=112  Identities=10%  Similarity=0.064  Sum_probs=62.6

Q ss_pred             CCCCCCcEEeccCCCCCCCCCCccccCC-----CCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCccccccCC-----
Q 039899            5 LGLCSLTKLDISDCNLGEGAIPSDIGNI-----CSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQSLP-----   73 (341)
Q Consensus         5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L-----~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~lP-----   73 (341)
                      ..+++|+.|+|++|.+. + +|..++.+     ++|++|+|++|.+..+| ..++.+++|+.|+|++|++.+.++     
T Consensus       118 ~~l~~L~~L~Ls~N~l~-~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWA-T-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCSCCCSEEEEESCBCS-S-SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             hcCCCccEEEccCCCCc-c-hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            45556666666666664 3 25555544     56666666666666444 456666666666666666544311     


Q ss_pred             --CCCccccccccccccccCcchhhhHHHH---hhchhccCCCCccccccC
Q 039899           74 --QLPSNIEQVQVNGCASLGTLSHALKLCK---SIDVEVSKPIPHLSIVVP  119 (341)
Q Consensus        74 --~lp~sL~~L~~~~c~sL~~l~~~p~~l~---~~l~~l~l~~n~~~~~lP  119 (341)
                        .-.++|+.|+++++ .++.+..++..+.   ..++.+++++|.+.+..|
T Consensus       196 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  245 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG  245 (312)
T ss_dssp             CTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred             HhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence              22345556666554 3443334444432   347777888888776553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.01  E-value=1.1e-09  Score=99.09  Aligned_cols=60  Identities=23%  Similarity=0.249  Sum_probs=31.5

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCcccc
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRL   69 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l   69 (341)
                      +|+.|+|++|++. +..|..++.+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++.
T Consensus        36 ~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   96 (251)
T 3m19_A           36 DTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA   96 (251)
T ss_dssp             TCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             CCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc
Confidence            4555555555554 3334445555555555555555554332 3455555555555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.99  E-value=4.7e-10  Score=115.30  Aligned_cols=115  Identities=14%  Similarity=0.218  Sum_probs=88.4

Q ss_pred             CCccccCCCCCcEEEccCCCCCC------------------CChhcc--CCCCccEEEcCCccccccCCCC---Cccccc
Q 039899           25 IPSDIGNICSLKELYLSKNRFFS------------------LPASIN--LLSKLWIIELEECQRLQSLPQL---PSNIEQ   81 (341)
Q Consensus        25 iP~~i~~L~~L~~L~Ls~N~~~~------------------LP~si~--~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~   81 (341)
                      ||..++.+++|+.|+|++|.|+.                  +|..++  ++++|++|+|++|++.+.+|..   .++|+.
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            89999999999999999999997                  999999  9999999999999999998864   357788


Q ss_pred             cccccccccCcchhhhHHHH--------hhchhccCCCCccccccCC--C--CccccchhccCCCeEEEEcC
Q 039899           82 VQVNGCASLGTLSHALKLCK--------SIDVEVSKPIPHLSIVVPG--S--EISKCFRYQKEDSAMAVTMP  141 (341)
Q Consensus        82 L~~~~c~sL~~l~~~p~~l~--------~~l~~l~l~~n~~~~~lPg--~--~iP~wf~~~~~g~si~~~Lp  141 (341)
                      |+++++..++. ..+|..+.        ..++.+++++|.++ .+|.  .  .++..-.....++.+++.+|
T Consensus       278 L~Ls~n~~l~~-~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          278 INVACNRGISG-EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             EECTTCTTSCH-HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred             EECcCCCCCcc-ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence            88877753432 02455543        45888999999998 5665  1  34443334456677777777

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.99  E-value=6.6e-10  Score=92.25  Aligned_cols=108  Identities=18%  Similarity=0.151  Sum_probs=85.8

Q ss_pred             CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC---Ccccccc
Q 039899            6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL---PSNIEQV   82 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L   82 (341)
                      ..++|+.|++++|.+.+|.+|..++.+++|+.|+|++|.++.+ ..++.+++|+.|++++|++.+.+|..   .++|+.|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            4578999999999997457999999999999999999999988 78999999999999999998767654   4578888


Q ss_pred             ccccccccCcchhhhHHHH--hhchhccCCCCcccc
Q 039899           83 QVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSI  116 (341)
Q Consensus        83 ~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~  116 (341)
                      +++++. ++.++. +..+.  ..++.+++++|.+++
T Consensus        94 ~ls~N~-i~~~~~-~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           94 NLSGNK-IKDLST-IEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             ECTTSC-CCSHHH-HGGGGGCTTCCEEECTTCGGGG
T ss_pred             ECCCCc-CCChHH-HHHHhhCCCCCEEeCcCCcccc
Confidence            887763 444321 12232  247888999998875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.97  E-value=2.5e-09  Score=95.76  Aligned_cols=107  Identities=18%  Similarity=0.198  Sum_probs=82.6

Q ss_pred             CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Ccccccc
Q 039899            7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PSNIEQV   82 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L   82 (341)
                      .++|+.|+|++|++. +..|..++.+++|+.|+|++|.|..+|. .+..+++|+.|+|++|++.+..+..   .++|+.|
T Consensus        39 ~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           39 PTNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence            378999999999998 6668889999999999999999998886 4689999999999999886544432   3577888


Q ss_pred             ccccccccCcchhhhHHHH--hhchhccCCCCcccccc
Q 039899           83 QVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVV  118 (341)
Q Consensus        83 ~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~l  118 (341)
                      +++++ .++.+   |..+.  ..++.+++++|.+....
T Consensus       118 ~Ls~N-~l~~l---p~~~~~l~~L~~L~L~~N~l~~~~  151 (229)
T 3e6j_A          118 FMCCN-KLTEL---PRGIERLTHLTHLALDQNQLKSIP  151 (229)
T ss_dssp             ECCSS-CCCSC---CTTGGGCTTCSEEECCSSCCCCCC
T ss_pred             eccCC-ccccc---CcccccCCCCCEEECCCCcCCccC
Confidence            88665 34444   33332  24788899999987533

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.96  E-value=6e-10  Score=97.70  Aligned_cols=78  Identities=24%  Similarity=0.319  Sum_probs=42.7

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Cccccccc
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PSNIEQVQ   83 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~   83 (341)
                      ++|+.|+|++|++. +..+..++.+++|+.|+|++|.++.+|.. +..+++|++|+|++|++.+..+..   .++|+.|+
T Consensus        28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            45666666666665 32233356666666666666666655543 456666666666666654322221   23455555


Q ss_pred             ccc
Q 039899           84 VNG   86 (341)
Q Consensus        84 ~~~   86 (341)
                      +++
T Consensus       107 L~~  109 (208)
T 2o6s_A          107 LNT  109 (208)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.94  E-value=5.6e-10  Score=116.75  Aligned_cols=64  Identities=28%  Similarity=0.318  Sum_probs=33.5

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCcccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRL   69 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l   69 (341)
                      +..++.|+.|+|++|.+..  +|..++.+++|+.|+|++|.|+.||.+|+.|++|+.|+|++|++.
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             --CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS
T ss_pred             hccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC
Confidence            4445555555555555532  555555555555555555555555555555555555555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.94  E-value=4.6e-10  Score=117.37  Aligned_cols=115  Identities=23%  Similarity=0.229  Sum_probs=85.9

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCC---ccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLP---SNI   79 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp---~sL   79 (341)
                      .+.+|++|+.|+|++|.|.  .+|..|+.|++|+.|+|++|.|+.||.+|+.|++|+.|+|++|.+ +.||.-.   ++|
T Consensus       242 ~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L  318 (727)
T 4b8c_D          242 NIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNL  318 (727)
T ss_dssp             GGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTC
T ss_pred             hhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCc
Confidence            4567899999999999997  499999999999999999999999999999999999999999987 4676532   456


Q ss_pred             cccccccccccCcchhhhHHHHhhchhccCCCCccccccCC
Q 039899           80 EQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPG  120 (341)
Q Consensus        80 ~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg  120 (341)
                      +.|+++++.--..++.....+......+++++|.+++.+|.
T Consensus       319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            66666655322222222222222233466788888886665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.92  E-value=1.2e-09  Score=95.37  Aligned_cols=83  Identities=10%  Similarity=0.138  Sum_probs=40.4

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCCC---CCcc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLPQ---LPSN   78 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~---lp~s   78 (341)
                      .+..+++|+.|++++|.+.   .++.++.+++|+.|+|++|.++ ..|..++.+++|+.|++++|++.+..|.   -.++
T Consensus        61 ~l~~l~~L~~L~l~~n~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~  137 (197)
T 4ezg_A           61 GIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK  137 (197)
T ss_dssp             TGGGCTTCSEEEEESCCCS---CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSS
T ss_pred             HHhcCCCCCEEEccCCCCC---cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCC
Confidence            3444555555555555443   2334555555555555555555 2444555555555555555555432221   1234


Q ss_pred             cccccccccc
Q 039899           79 IEQVQVNGCA   88 (341)
Q Consensus        79 L~~L~~~~c~   88 (341)
                      |+.|++++|.
T Consensus       138 L~~L~L~~n~  147 (197)
T 4ezg_A          138 VNSIDLSYNG  147 (197)
T ss_dssp             CCEEECCSCT
T ss_pred             CCEEEccCCC
Confidence            4555555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.92  E-value=7e-10  Score=96.77  Aligned_cols=85  Identities=20%  Similarity=0.245  Sum_probs=71.0

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCccccccCCCC--Ccc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQSLPQL--PSN   78 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~s   78 (341)
                      |.+..+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++ ..|..++.+++|+.|++++|+..+.+|.+  .++
T Consensus        82 ~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~  160 (197)
T 4ezg_A           82 NPISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE  160 (197)
T ss_dssp             GGGTTCTTCCEEEEECTTCB-GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSS
T ss_pred             hhhhcCCCCCEEEeECCccC-cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCC
Confidence            45788999999999999998 667899999999999999999999 57889999999999999999866666532  235


Q ss_pred             ccccccccc
Q 039899           79 IEQVQVNGC   87 (341)
Q Consensus        79 L~~L~~~~c   87 (341)
                      |+.|+++++
T Consensus       161 L~~L~l~~n  169 (197)
T 4ezg_A          161 LKSLNIQFD  169 (197)
T ss_dssp             CCEEECTTB
T ss_pred             CCEEECCCC
Confidence            566666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.92  E-value=4.8e-09  Score=97.39  Aligned_cols=137  Identities=20%  Similarity=0.215  Sum_probs=77.9

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC---Cccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL---PSNI   79 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL   79 (341)
                      ++.++++|+.|+|++|.+..  +|.. +.+++|+.|+|++|.++.+|..+..+++|+.|+|++|++.+..|..   .++|
T Consensus        50 ~~~~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L  126 (290)
T 1p9a_G           50 TLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL  126 (290)
T ss_dssp             GGTTCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred             HhhcCCCCCEEECCCCccCc--ccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC
Confidence            35667778888888877752  5543 6777777777777777777777777777777777777765433332   2356


Q ss_pred             cccccccccccCcch-hhhHHHHhhchhccCCCCccccccCCC--CccccchhccCCCeEEEEcCCCCC
Q 039899           80 EQVQVNGCASLGTLS-HALKLCKSIDVEVSKPIPHLSIVVPGS--EISKCFRYQKEDSAMAVTMPLFLR  145 (341)
Q Consensus        80 ~~L~~~~c~sL~~l~-~~p~~l~~~l~~l~l~~n~~~~~lPg~--~iP~wf~~~~~g~si~~~Lp~~~~  145 (341)
                      +.|+++++ .++.++ ..+.. ...++.+++++|.+....++.  .++..-.....+|.++ .+|....
T Consensus       127 ~~L~L~~N-~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~  192 (290)
T 1p9a_G          127 QELYLKGN-ELKTLPPGLLTP-TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF  192 (290)
T ss_dssp             CEEECTTS-CCCCCCTTTTTT-CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             CEEECCCC-CCCccChhhccc-ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence            66666554 233222 11111 123666677777776433321  2333333333445444 4554443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.91  E-value=4.5e-09  Score=93.53  Aligned_cols=107  Identities=17%  Similarity=0.174  Sum_probs=69.9

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCC-C---Ccccccc
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQ-L---PSNIEQV   82 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~-l---p~sL~~L   82 (341)
                      ++|+.|+|++|++. +..|..+..+++|+.|+|++|.++.+ |..+.++++|+.|+|++|++. .+|. .   .++|+.|
T Consensus        32 ~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           32 ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEE
Confidence            46888888888886 33334678888888888888888855 667888888888888888775 3442 2   2456666


Q ss_pred             ccccccccCcchhhhHHHH--hhchhccCCCCccccccC
Q 039899           83 QVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVVP  119 (341)
Q Consensus        83 ~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~lP  119 (341)
                      +++++ .++.+.  +..+.  ..++.+++++|.+.+..|
T Consensus       110 ~L~~N-~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B          110 LLNAN-KINCLR--VDAFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             ECCSS-CCCCCC--TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ECCCC-CCCEeC--HHHcCCCCCCCEEECCCCcCCEECH
Confidence            66554 223221  11121  236777888888875444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.91  E-value=4.1e-09  Score=93.79  Aligned_cols=109  Identities=11%  Similarity=0.088  Sum_probs=57.8

Q ss_pred             CCcEEeccCCCCCCCCCC-ccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Cccccccc
Q 039899            9 SLTKLDISDCNLGEGAIP-SDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PSNIEQVQ   83 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP-~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~   83 (341)
                      .++.|+|++|++. +..| ..++.+++|+.|+|++|.|+.+|. .+..+++|+.|+|++|++.+..|..   .++|+.|+
T Consensus        33 ~~~~L~L~~N~l~-~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           33 YTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TCSEEECCSSCCC-EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCEEEcCCCcCC-ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            4566677777665 3223 235666667777777776665544 5666666777777766665433321   23455555


Q ss_pred             cccccccCcch-hhhHHHHhhchhccCCCCccccccCC
Q 039899           84 VNGCASLGTLS-HALKLCKSIDVEVSKPIPHLSIVVPG  120 (341)
Q Consensus        84 ~~~c~sL~~l~-~~p~~l~~~l~~l~l~~n~~~~~lPg  120 (341)
                      ++++. ++.+. ..+..+ ..++.+++++|.+++..|+
T Consensus       112 Ls~N~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~  147 (220)
T 2v70_A          112 LRSNR-ITCVGNDSFIGL-SSVRLLSLYDNQITTVAPG  147 (220)
T ss_dssp             CTTSC-CCCBCTTSSTTC-TTCSEEECTTSCCCCBCTT
T ss_pred             CCCCc-CCeECHhHcCCC-ccCCEEECCCCcCCEECHH
Confidence            54432 22221 111111 2256666777777654443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.91  E-value=4.4e-09  Score=96.30  Aligned_cols=115  Identities=21%  Similarity=0.206  Sum_probs=82.0

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Cc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PS   77 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~   77 (341)
                      |++..+++|++|+|++|.+. +..|..++.+++|+.|+|++|.++.+|.. ++.+++|+.|++++|++.+..|..   .+
T Consensus        79 ~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  157 (272)
T 3rfs_A           79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT  157 (272)
T ss_dssp             GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc
Confidence            45778889999999999997 54455578899999999999999977754 788999999999999876544432   45


Q ss_pred             cccccccccccccCcchh-hhHHHHhhchhccCCCCccccccC
Q 039899           78 NIEQVQVNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLSIVVP  119 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~~~lP  119 (341)
                      +|+.|+++++ .++.+.. .+.. ...++.+++++|.+.+..|
T Consensus       158 ~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          158 NLTELDLSYN-QLQSLPEGVFDK-LTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             TCCEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSSCCSCCCT
T ss_pred             cCCEEECCCC-CcCccCHHHhcC-CccCCEEECCCCcCCccCH
Confidence            7788888776 3333321 1111 1347778888888876544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.90  E-value=5.5e-09  Score=95.89  Aligned_cols=59  Identities=14%  Similarity=0.170  Sum_probs=28.9

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCcc
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQ   67 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~   67 (341)
                      ++|+.|+|++|++. +..|..++.+++|+.|+|++|.++.+ |..+..+++|+.|++++|+
T Consensus        32 ~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             CCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            34555555555554 22223345555555555555555533 3445555555555555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.90  E-value=3.3e-09  Score=98.52  Aligned_cols=108  Identities=23%  Similarity=0.172  Sum_probs=62.0

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCC---cccccccc
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLP---SNIEQVQV   84 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp---~sL~~L~~   84 (341)
                      +.|+.|+|++|.+. +..|..+..+++|+.|+|++|.++.+|.. +.+++|+.|+|++|++. .+|...   ++|+.|++
T Consensus        31 ~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence            45777777777775 44455677777777777777777766643 66777777777777663 455422   34555555


Q ss_pred             ccccccCcch-hhhHHHHhhchhccCCCCccccccCC
Q 039899           85 NGCASLGTLS-HALKLCKSIDVEVSKPIPHLSIVVPG  120 (341)
Q Consensus        85 ~~c~sL~~l~-~~p~~l~~~l~~l~l~~n~~~~~lPg  120 (341)
                      +++ .++.++ ..+..+ ..++.+++++|.+....|+
T Consensus       108 ~~N-~l~~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~  142 (290)
T 1p9a_G          108 SFN-RLTSLPLGALRGL-GELQELYLKGNELKTLPPG  142 (290)
T ss_dssp             CSS-CCCCCCSSTTTTC-TTCCEEECTTSCCCCCCTT
T ss_pred             CCC-cCcccCHHHHcCC-CCCCEEECCCCCCCccChh
Confidence            443 222222 111111 2366667777776654443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.90  E-value=1.2e-09  Score=92.63  Aligned_cols=108  Identities=19%  Similarity=0.233  Sum_probs=83.6

Q ss_pred             CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC---Ccccccc
Q 039899            6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL---PSNIEQV   82 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L   82 (341)
                      ..++|+.|+|++|++.+|.+|..++.+++|+.|+|++|.++.+ ..+..+++|+.|+|++|++.+.+|..   .++|+.|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            3578999999999997457998889999999999999999988 78999999999999999987766653   4578888


Q ss_pred             ccccccccCcchhhhHHHH--hhchhccCCCCcccc
Q 039899           83 QVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSI  116 (341)
Q Consensus        83 ~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~  116 (341)
                      +++++ .++.++.+ ..+.  ..++.+++++|.++.
T Consensus       101 ~Ls~N-~l~~~~~~-~~l~~l~~L~~L~l~~N~l~~  134 (168)
T 2ell_A          101 NLSGN-KLKDISTL-EPLKKLECLKSLDLFNCEVTN  134 (168)
T ss_dssp             ECBSS-SCCSSGGG-GGGSSCSCCCEEECCSSGGGT
T ss_pred             eccCC-ccCcchhH-HHHhcCCCCCEEEeeCCcCcc
Confidence            88776 44544321 2222  237788888888874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.90  E-value=2.7e-09  Score=98.87  Aligned_cols=66  Identities=32%  Similarity=0.408  Sum_probs=32.9

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC--CChhccCCCCccEEEcCCccccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFS--LPASINLLSKLWIIELEECQRLQ   70 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~--LP~si~~Ls~L~~L~Ls~c~~l~   70 (341)
                      +.++++|+.|+|++|.+. +..|..++.+++|+.|+|++|.+..  +|..+..+++|+.|++++|++.+
T Consensus       122 ~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  189 (306)
T 2z66_A          122 FLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ  189 (306)
T ss_dssp             TTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             hhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC
Confidence            344445555555555554 3344444555555555555555542  44455555555555555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.87  E-value=1.8e-09  Score=94.03  Aligned_cols=106  Identities=16%  Similarity=0.199  Sum_probs=73.9

Q ss_pred             CCcEEeccCCCCCCCCCCcc--ccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC---Ccccccc
Q 039899            9 SLTKLDISDCNLGEGAIPSD--IGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL---PSNIEQV   82 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~--i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L   82 (341)
                      +|+.|+|++|++. + +|..  ++.+++|+.|+|++|.|+.+ |..++.+++|+.|+|++|++.+..|..   .++|+.|
T Consensus        30 ~l~~L~l~~n~i~-~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           30 HTTELLLNDNELG-R-ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TCSEEECCSCCCC-S-BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCEEECCCCcCC-c-cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            7889999999886 3 5543  88899999999999999865 678888999999999999887655542   3566666


Q ss_pred             ccccccccCcchhhhHHHH--hhchhccCCCCccccccC
Q 039899           83 QVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVVP  119 (341)
Q Consensus        83 ~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~lP  119 (341)
                      ++++.. +..+.  |..+.  ..++.+++++|.+.+..+
T Consensus       108 ~L~~N~-l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          108 NLYDNQ-ISCVM--PGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             ECCSSC-CCEEC--TTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ECCCCc-CCeeC--HHHhhcCCCCCEEEeCCCCccCcCc
Confidence            665542 22221  22221  236777888888875433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.87  E-value=3.7e-09  Score=103.71  Aligned_cols=90  Identities=19%  Similarity=0.236  Sum_probs=64.5

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCC-C---Cc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQ-L---PS   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~-l---p~   77 (341)
                      ++.++++|+.|+|++|++. +..|..++.+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++.. +|. .   .+
T Consensus        94 ~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~  171 (452)
T 3zyi_A           94 TFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVP  171 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCT
T ss_pred             HcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCC
Confidence            4677888888888888886 5455678888888888888888887775 47778888888888887753 332 1   34


Q ss_pred             cccccccccccccCcch
Q 039899           78 NIEQVQVNGCASLGTLS   94 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~   94 (341)
                      +|+.|++.+|..++.++
T Consensus       172 ~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          172 SLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             TCCEEECCCCTTCCEEC
T ss_pred             cccEEeCCCCCCccccC
Confidence            66777776665555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.87  E-value=5.2e-09  Score=97.54  Aligned_cols=114  Identities=11%  Similarity=0.051  Sum_probs=83.8

Q ss_pred             CCCCCCcEEeccCCCCCCCCCC----ccccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCcccccc--CC----
Q 039899            5 LGLCSLTKLDISDCNLGEGAIP----SDIGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQS--LP----   73 (341)
Q Consensus         5 ~~L~~L~~LdLs~~~l~eg~iP----~~i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~--lP----   73 (341)
                      ..+++|+.|+|++|.+. +..|    ..+..+++|+.|+|++|.+..+| ..++.+++|+.|+|++|++.+.  ++    
T Consensus       114 ~~~~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  192 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWA-TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC  192 (310)
T ss_dssp             CCCBCCSSCEEESCCCS-STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred             ccCCCCCEEEeeccccc-chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence            67888888888888887 5555    34567889999999999998655 5788999999999999987542  11    


Q ss_pred             -CCCccccccccccccccCcchhhhHHHH---hhchhccCCCCccccccCC
Q 039899           74 -QLPSNIEQVQVNGCASLGTLSHALKLCK---SIDVEVSKPIPHLSIVVPG  120 (341)
Q Consensus        74 -~lp~sL~~L~~~~c~sL~~l~~~p~~l~---~~l~~l~l~~n~~~~~lPg  120 (341)
                       .-.++|+.|+++++ .++.++..+..+.   ..++.+++++|.+.+..|.
T Consensus       193 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~  242 (310)
T 4glp_A          193 PHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP  242 (310)
T ss_dssp             TTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred             hhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence             12347888888776 4565555544442   3488899999999887664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.86  E-value=3.7e-09  Score=112.65  Aligned_cols=66  Identities=17%  Similarity=0.237  Sum_probs=36.5

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCC-ccEEEcCCccccccCC
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSK-LWIIELEECQRLQSLP   73 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~-L~~L~Ls~c~~l~~lP   73 (341)
                      +.++++|+.|+|++|++.  .+| .++.+++|+.|+|++|.+..+|..+..+++ |+.|+|++|++. .+|
T Consensus       569 l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp  635 (876)
T 4ecn_A          569 LQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIP  635 (876)
T ss_dssp             HTTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred             hhcCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCc
Confidence            455555555555555554  255 555555555555555555555555555555 555555555543 444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.85  E-value=4.1e-09  Score=104.78  Aligned_cols=107  Identities=9%  Similarity=0.111  Sum_probs=85.3

Q ss_pred             CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC---CChhccCCCCccEEEcCCccccccCCC----CCc
Q 039899            5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFS---LPASINLLSKLWIIELEECQRLQSLPQ----LPS   77 (341)
Q Consensus         5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~---LP~si~~Ls~L~~L~Ls~c~~l~~lP~----lp~   77 (341)
                      ..+++|+.|+|++|.+. +.+|..++.+++|+.|+|++|.++.   +|..++.+++|+.|++++|++.+.+|.    ..+
T Consensus       321 ~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCC-TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccC-hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            67899999999999998 7889999999999999999999994   556799999999999999999875663    246


Q ss_pred             cccccccccccccCcchhhhHHHHhhchhccCCCCccc
Q 039899           78 NIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLS  115 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~  115 (341)
                      +|+.|+++++.--.   .+|..+...++.+++++|.++
T Consensus       400 ~L~~L~Ls~N~l~~---~~~~~l~~~L~~L~Ls~N~l~  434 (520)
T 2z7x_B          400 SLLSLNMSSNILTD---TIFRCLPPRIKVLDLHSNKIK  434 (520)
T ss_dssp             TCCEEECCSSCCCG---GGGGSCCTTCCEEECCSSCCC
T ss_pred             cCCEEECcCCCCCc---chhhhhcccCCEEECCCCccc
Confidence            78888887764222   223333355788888888886

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.85  E-value=3.6e-09  Score=107.58  Aligned_cols=105  Identities=15%  Similarity=0.141  Sum_probs=79.0

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Ccccccccccc
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNIEQVQVNG   86 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL~~L~~~~   86 (341)
                      .|+.|+|++|.+..  +|. ++.+++|+.|+|++|.|+.+|..|++|++|+.|+|++|++.+ +|.+  .++|+.|++++
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCC
Confidence            48889999999863  886 899999999999999999999999999999999999998864 6643  35677777766


Q ss_pred             ccccCcchhhhHHHHh--hchhccCCCCccccccC
Q 039899           87 CASLGTLSHALKLCKS--IDVEVSKPIPHLSIVVP  119 (341)
Q Consensus        87 c~sL~~l~~~p~~l~~--~l~~l~l~~n~~~~~lP  119 (341)
                      + .++.+. .|..+..  .|+.+++++|.+++..|
T Consensus       518 N-~l~~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          518 N-RLQQSA-AIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             S-CCCSSS-TTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             C-CCCCCC-CcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            4 333331 0333432  47889999999987554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.85  E-value=1.1e-08  Score=92.34  Aligned_cols=114  Identities=20%  Similarity=0.198  Sum_probs=82.2

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PSN   78 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s   78 (341)
                      ++.++++|++|+|++|.+. +..|..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++.+..+..   .++
T Consensus        54 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  132 (251)
T 3m19_A           54 TFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK  132 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             HhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence            4778899999999999997 6556668999999999999999997774 5788999999999999886443332   456


Q ss_pred             ccccccccccccCcchh-hhHHHHhhchhccCCCCccccccC
Q 039899           79 IEQVQVNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLSIVVP  119 (341)
Q Consensus        79 L~~L~~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~~~lP  119 (341)
                      |+.|+++++ .++.++. .+..+ ..++.+++++|.+.+..|
T Consensus       133 L~~L~Ls~N-~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A          133 LKELRLNTN-QLQSIPAGAFDKL-TNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             CCEEECCSS-CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCT
T ss_pred             ccEEECcCC-cCCccCHHHcCcC-cCCCEEECCCCcCCccCH
Confidence            777777665 3443321 11111 237778888888875433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.85  E-value=1.7e-09  Score=115.18  Aligned_cols=43  Identities=16%  Similarity=0.202  Sum_probs=20.0

Q ss_pred             CCcccc--CCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCcc
Q 039899           25 IPSDIG--NICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQ   67 (341)
Q Consensus        25 iP~~i~--~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~   67 (341)
                      +|..++  .+++|+.|+|++|.+. .+|..+++|++|+.|+|++|+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            444444  4444444444444433 444444444444444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.84  E-value=1.2e-08  Score=93.21  Aligned_cols=60  Identities=23%  Similarity=0.345  Sum_probs=35.6

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCcccc
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRL   69 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l   69 (341)
                      +|+.|+|++|++. +..|..++.+++|++|+|++|.++.+|.. +..+++|+.|+|++|++.
T Consensus        38 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~   98 (270)
T 2o6q_A           38 DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ   98 (270)
T ss_dssp             TCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC
T ss_pred             CCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC
Confidence            4666666666665 22233566666666666666666666554 355666666666666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.83  E-value=6.5e-09  Score=95.40  Aligned_cols=115  Identities=19%  Similarity=0.221  Sum_probs=80.1

Q ss_pred             CCCCCCCCcEEeccCCC-CCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC---Cc
Q 039899            3 SLLGLCSLTKLDISDCN-LGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL---PS   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~-l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~   77 (341)
                      ++.++++|+.|+|++|. +. +..|..++.+++|+.|+|++|.++.+ |..+..+++|+.|++++|++.+..+..   .+
T Consensus        75 ~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  153 (285)
T 1ozn_A           75 AFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG  153 (285)
T ss_dssp             TTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC
Confidence            57788899999999997 64 33377788899999999999999866 567888999999999999886543332   35


Q ss_pred             cccccccccccccCcchh-hhHHHHhhchhccCCCCccccccCC
Q 039899           78 NIEQVQVNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLSIVVPG  120 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~~~lPg  120 (341)
                      +|+.|+++++ .++.++. .+.. ...++.+++++|.+.+..|.
T Consensus       154 ~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~  195 (285)
T 1ozn_A          154 NLTHLFLHGN-RISSVPERAFRG-LHSLDRLLLHQNRVAHVHPH  195 (285)
T ss_dssp             TCCEEECCSS-CCCEECTTTTTT-CTTCCEEECCSSCCCEECTT
T ss_pred             CccEEECCCC-cccccCHHHhcC-ccccCEEECCCCcccccCHh
Confidence            6777777665 2333221 1111 12366777888877765443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.83  E-value=4.6e-09  Score=104.42  Aligned_cols=108  Identities=16%  Similarity=0.133  Sum_probs=69.2

Q ss_pred             CCCCCCCCcEEeccCCCCCCC--CCCccccCCCCCcEEEccCCCCCC-CChh-ccCCCCccEEEcCCccccccCCC-CCc
Q 039899            3 SLLGLCSLTKLDISDCNLGEG--AIPSDIGNICSLKELYLSKNRFFS-LPAS-INLLSKLWIIELEECQRLQSLPQ-LPS   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg--~iP~~i~~L~~L~~L~Ls~N~~~~-LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~-lp~   77 (341)
                      .+..+++|+.|+|++|++. +  .+|..++.+++|+.|+|++|.+.. +|.. +..+++|+.|++++|++.+.+|. +|+
T Consensus       343 ~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  421 (520)
T 2z7x_B          343 NCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP  421 (520)
T ss_dssp             TCCCCSSCCEEECCSSCCC-BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCT
T ss_pred             hhccCCCCCEEEccCCccC-ccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcc
Confidence            4566777777777777775 3  345567777777777777777775 7754 66677777777777777665554 446


Q ss_pred             cccccccccccccCcchhhhHHHH--hhchhccCCCCccc
Q 039899           78 NIEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLS  115 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~  115 (341)
                      +|+.|+++++ .++.+   |..+.  ..++.+++++|.+.
T Consensus       422 ~L~~L~Ls~N-~l~~i---p~~~~~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          422 RIKVLDLHSN-KIKSI---PKQVVKLEALQELNVASNQLK  457 (520)
T ss_dssp             TCCEEECCSS-CCCCC---CGGGGGCTTCCEEECCSSCCC
T ss_pred             cCCEEECCCC-ccccc---chhhhcCCCCCEEECCCCcCC
Confidence            7777777665 33433   33222  23666677777766

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.82  E-value=9.8e-09  Score=100.35  Aligned_cols=89  Identities=19%  Similarity=0.177  Sum_probs=62.8

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PSN   78 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s   78 (341)
                      ++.++++|+.|+|++|.+. +..|..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++....+..   .++
T Consensus        83 ~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  161 (440)
T 3zyj_A           83 SFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS  161 (440)
T ss_dssp             TTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             HhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence            4677888888888888886 4344667888888888888888887775 5788888888888888765322211   346


Q ss_pred             ccccccccccccCc
Q 039899           79 IEQVQVNGCASLGT   92 (341)
Q Consensus        79 L~~L~~~~c~sL~~   92 (341)
                      |+.|++.++..+..
T Consensus       162 L~~L~l~~~~~l~~  175 (440)
T 3zyj_A          162 LRRLDLGELKRLSY  175 (440)
T ss_dssp             CCEEECCCCTTCCE
T ss_pred             cCEeCCCCCCCcce
Confidence            66676666544443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.81  E-value=1.3e-08  Score=89.13  Aligned_cols=112  Identities=20%  Similarity=0.205  Sum_probs=83.0

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PSN   78 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~s   78 (341)
                      +.++++|++|+|++|++. + +|. .++.+++|++|+|++|.++.+|.. ++.+++|+.|+|++|++.+..+..   .++
T Consensus        48 ~~~l~~L~~L~l~~n~l~-~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  125 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQ-S-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ  125 (208)
T ss_dssp             TTTCTTCSEEECCSSCCC-C-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hcccccCcEEECCCCccC-c-cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCc
Confidence            678999999999999997 4 554 578999999999999999988864 689999999999999986544432   357


Q ss_pred             ccccccccccccCcchh-hhHHHHhhchhccCCCCccccccC
Q 039899           79 IEQVQVNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLSIVVP  119 (341)
Q Consensus        79 L~~L~~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~~~lP  119 (341)
                      |+.|++.++ .++.+.. .+.. ...++.+++++|.+.+..|
T Consensus       126 L~~L~l~~N-~l~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          126 LKDLRLYQN-QLKSVPDGVFDR-LTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CCEEECCSS-CCSCCCTTTTTT-CTTCCEEECCSCCBCCCTT
T ss_pred             CCEEECCCC-ccceeCHHHhcc-CCCccEEEecCCCeecCCC
Confidence            777777665 3333321 1111 1247788889888876444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.80  E-value=3.9e-09  Score=99.99  Aligned_cols=112  Identities=20%  Similarity=0.197  Sum_probs=61.5

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCC--C---Cc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQ--L---PS   77 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~--l---p~   77 (341)
                      +.++++|+.|+|++|++. +..|..++.+++|+.|+|++|.++.+|.. ++++++|+.|++++|++. .+|.  .   .+
T Consensus        72 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~  149 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLT  149 (353)
T ss_dssp             TTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCT
T ss_pred             hccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCC
Confidence            556666666666666665 33345566666677777776666666654 666666777777666654 3433  1   23


Q ss_pred             cccccccccccccCcchhhhHHHH--hhchhccCCCCccccccC
Q 039899           78 NIEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVVP  119 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~lP  119 (341)
                      +|+.|+++++..+..+.  +..+.  ..++.+++++|.+.+..|
T Consensus       150 ~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~  191 (353)
T 2z80_A          150 KLQILRVGNMDTFTKIQ--RKDFAGLTFLEELEIDASDLQSYEP  191 (353)
T ss_dssp             TCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             CCcEEECCCCccccccC--HHHccCCCCCCEEECCCCCcCccCH
Confidence            55555555543333321  11111  124555566665554333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.79  E-value=1.1e-08  Score=103.55  Aligned_cols=84  Identities=20%  Similarity=0.195  Sum_probs=54.5

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL---PSN   78 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s   78 (341)
                      ++.++++|++|+|++|.+. +..|..++.+++|+.|+|++|.++.+ |..|+++++|++|++++|++.+..|..   ..+
T Consensus        51 ~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  129 (606)
T 3vq2_A           51 SFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT  129 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred             hccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence            4667777777777777776 44456677777777777777777755 667777777777777777764322221   235


Q ss_pred             ccccccccc
Q 039899           79 IEQVQVNGC   87 (341)
Q Consensus        79 L~~L~~~~c   87 (341)
                      |+.|+++++
T Consensus       130 L~~L~L~~n  138 (606)
T 3vq2_A          130 LKKLNVAHN  138 (606)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEeCCCC
Confidence            555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.79  E-value=9.3e-09  Score=86.97  Aligned_cols=107  Identities=18%  Similarity=0.192  Sum_probs=79.4

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC-CChhccCCCCccEEEcCCccccccCC---C--CCc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFS-LPASINLLSKLWIIELEECQRLQSLP---Q--LPS   77 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~-LP~si~~Ls~L~~L~Ls~c~~l~~lP---~--lp~   77 (341)
                      +..+++|+.|+|++|.+. + + ..++.+++|+.|+|++|.++. +|..+..+++|+.|+|++|++.+ +|   .  -.+
T Consensus        45 ~~~l~~L~~L~l~~n~l~-~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~  120 (168)
T 2ell_A           45 TAEFVNLEFLSLINVGLI-S-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLE  120 (168)
T ss_dssp             CGGGGGCCEEEEESSCCC-C-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCS
T ss_pred             HHhCCCCCEEeCcCCCCC-C-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCC
Confidence            477899999999999997 3 5 789999999999999999996 88888889999999999998754 33   1  134


Q ss_pred             cccccccccccccCcchhhhH-HHH--hhchhccCCCCccc
Q 039899           78 NIEQVQVNGCASLGTLSHALK-LCK--SIDVEVSKPIPHLS  115 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~~~p~-~l~--~~l~~l~l~~n~~~  115 (341)
                      +|+.|+++++ .+..++.... .+.  ..++.++++.|.+.
T Consensus       121 ~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          121 CLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            6777777765 3333332111 221  23777788777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.79  E-value=1.5e-08  Score=86.44  Aligned_cols=108  Identities=19%  Similarity=0.196  Sum_probs=77.6

Q ss_pred             CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Ccccccc
Q 039899            7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PSNIEQV   82 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L   82 (341)
                      .++|+.|+|++|++. +..|..++.+++|+.|+|++|.++.+|.. +..+++|+.|+|++|++.+..+..   .++|+.|
T Consensus        27 ~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           27 PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence            468999999999997 43444578899999999999999988764 688999999999999887544432   3567777


Q ss_pred             ccccccccCcchhhhHHH---HhhchhccCCCCccccccC
Q 039899           83 QVNGCASLGTLSHALKLC---KSIDVEVSKPIPHLSIVVP  119 (341)
Q Consensus        83 ~~~~c~sL~~l~~~p~~l---~~~l~~l~l~~n~~~~~lP  119 (341)
                      +++++ .++.++   ...   ...++.+++++|.+.+..|
T Consensus       106 ~l~~N-~l~~~~---~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          106 ALDTN-QLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             ECCSS-CCSCCC---TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ECcCC-cceEeC---HHHhcCCcccCEEEecCCCeeccCc
Confidence            77665 344332   222   1236777888888875444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.79  E-value=9.3e-09  Score=95.38  Aligned_cols=110  Identities=22%  Similarity=0.244  Sum_probs=69.1

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cccc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNI   79 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL   79 (341)
                      |.+..+++|+.|+|++|++..  +|. ++.+++|+.|+|++|.++.+|. +..+++|+.|++++|++.+ ++.+  .++|
T Consensus        62 ~~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~-~~~l~~l~~L  136 (291)
T 1h6t_A           62 QGIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISD-INGLVHLPQL  136 (291)
T ss_dssp             TTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCC-CGGGGGCTTC
T ss_pred             hhHhcCCCCCEEEccCCccCC--Ccc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCC-ChhhcCCCCC
Confidence            445667777788888887762  554 7777788888888887777664 7777788888888777643 3432  2456


Q ss_pred             cccccccccccCcchhhhHHHHhhchhccCCCCccccccC
Q 039899           80 EQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVP  119 (341)
Q Consensus        80 ~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lP  119 (341)
                      +.|+++++ .++.+.. ... ...++.+++++|.+....|
T Consensus       137 ~~L~l~~n-~l~~~~~-l~~-l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          137 ESLYLGNN-KITDITV-LSR-LTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             CEEECCSS-CCCCCGG-GGG-CTTCSEEECCSSCCCCCGG
T ss_pred             CEEEccCC-cCCcchh-hcc-CCCCCEEEccCCccccchh
Confidence            66666554 2333311 111 1236677777777765433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.78  E-value=5.2e-09  Score=95.77  Aligned_cols=106  Identities=18%  Similarity=0.171  Sum_probs=81.3

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCC-ccccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLP-SNIEQ   81 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp-~sL~~   81 (341)
                      ++..+++|+.|++++|.+.+  +| .++.+++|+.|+|++|.++.+|. +..+++|+.|+|++|++.+ +|.++ .+|+.
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~  110 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN-LNGIPSACLSR  110 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC-CTTCCCSSCCE
T ss_pred             chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC-cCccccCcccE
Confidence            35567889999999999964  77 78999999999999999999887 9999999999999998854 55433 68888


Q ss_pred             cccccccccCcchhhhHHHHhhchhccCCCCcccc
Q 039899           82 VQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSI  116 (341)
Q Consensus        82 L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~  116 (341)
                      |+++++ .++.++.+ .. ...++.+++++|.+++
T Consensus       111 L~L~~N-~l~~~~~l-~~-l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A          111 LFLDNN-ELRDTDSL-IH-LKNLEILSIRNNKLKS  142 (263)
T ss_dssp             EECCSS-CCSBSGGG-TT-CTTCCEEECTTSCCCB
T ss_pred             EEccCC-ccCCChhh-cC-cccccEEECCCCcCCC
Confidence            888776 44444311 11 1247778888888875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.78  E-value=1.9e-09  Score=99.99  Aligned_cols=125  Identities=14%  Similarity=0.136  Sum_probs=87.1

Q ss_pred             CCCCCCCCcEEeccCCCCCCC-CCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC---Cc
Q 039899            3 SLLGLCSLTKLDISDCNLGEG-AIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL---PS   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg-~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~   77 (341)
                      .+.++++|+.|+|++|.+. + .+|..++.+++|+.|+|++|.++.+ |..+..+++|+.|+|++|++.+..+..   .+
T Consensus       145 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  223 (306)
T 2z66_A          145 IFNGLSSLEVLKMAGNSFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN  223 (306)
T ss_dssp             TTTTCTTCCEEECTTCEEG-GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred             hcccCcCCCEEECCCCccc-cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence            3678899999999999997 4 5788999999999999999999966 678999999999999999986432211   25


Q ss_pred             cccccccccccccCcchhhhHHHHhhchhccCCCCccccccCCCCccccch
Q 039899           78 NIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGSEISKCFR  128 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg~~iP~wf~  128 (341)
                      +|+.|+++++.--.........+...++.+++++|.+.+.-+-..++.|+.
T Consensus       224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~  274 (306)
T 2z66_A          224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK  274 (306)
T ss_dssp             TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred             cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence            677777766532221111111111346777888888764333234556654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.78  E-value=7.1e-09  Score=104.45  Aligned_cols=114  Identities=16%  Similarity=0.172  Sum_probs=66.6

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC----Cc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL----PS   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l----p~   77 (341)
                      +|.++++|++|+|++|+|. +..|..|++|++|++|+|++|.++.+|. .+.+|++|+.|+|++|++.+ +|..    .+
T Consensus        71 ~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~  148 (635)
T 4g8a_A           71 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLK  148 (635)
T ss_dssp             TTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCT
T ss_pred             HHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCc
Confidence            4667777777777777775 3223456777777777777777776664 46777777777777776643 3321    23


Q ss_pred             cccccccccccccCcchhhhHHHH--hhchhccCCCCccccccCC
Q 039899           78 NIEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVVPG  120 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~lPg  120 (341)
                      +|+.|+++++. ++.+ .+|..+.  ..++.+++++|.+.+..|+
T Consensus       149 ~L~~L~Ls~N~-l~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          149 TLKELNVAHNL-IQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             TCCEEECCSSC-CCCC-CCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             ccCeeccccCc-cccC-CCchhhccchhhhhhcccCccccccccc
Confidence            55556554431 2111 1122222  2366777777777655443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.78  E-value=2.7e-08  Score=90.80  Aligned_cols=113  Identities=15%  Similarity=0.142  Sum_probs=79.0

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCccccccCCC---CCcc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQSLPQ---LPSN   78 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~lP~---lp~s   78 (341)
                      ++.++++|++|+|++|.+. +..|..++.+++|+.|+|++|.++.+| ..+.++++|+.|++++|++.+..+.   -.++
T Consensus        47 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  125 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred             HhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence            5778899999999999986 434457888999999999999998665 5788899999999999887643331   1246


Q ss_pred             ccccccccccccCcchhhhHHHH--hhchhccCCCCcccccc
Q 039899           79 IEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVV  118 (341)
Q Consensus        79 L~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~l  118 (341)
                      |+.|+++++. ++.+ .+|..+.  ..++.+++++|.+.+..
T Consensus       126 L~~L~l~~n~-l~~~-~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A          126 LKELNVAHNL-IQSF-KLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             CCEEECCSSC-CCCC-CCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCEEECcCCc-ccee-cCchhhccCCCCCEEECCCCCCCcCC
Confidence            7777776542 2221 1222332  23777788888776543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.78  E-value=8.5e-09  Score=103.87  Aligned_cols=133  Identities=10%  Similarity=0.063  Sum_probs=95.9

Q ss_pred             CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC---hhccCCCCccEEEcCCccccccCCC----CCc
Q 039899            5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP---ASINLLSKLWIIELEECQRLQSLPQ----LPS   77 (341)
Q Consensus         5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP---~si~~Ls~L~~L~Ls~c~~l~~lP~----lp~   77 (341)
                      ..+++|+.|+|++|.+. +.+|..++.+++|+.|+|++|.++.+|   ..++.+++|+.|++++|++.+.+|.    ..+
T Consensus       350 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCC-TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccc-cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            67889999999999998 788999999999999999999999665   5689999999999999999876664    246


Q ss_pred             cccccccccccccCcchhhhHHHHhhchhccCCCCccccccCCC--CccccchhccCCCeEEEEcCCC
Q 039899           78 NIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPGS--EISKCFRYQKEDSAMAVTMPLF  143 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg~--~iP~wf~~~~~g~si~~~Lp~~  143 (341)
                      +|+.|+++++. +.  ..+|..+...++.+++++|.++. +|..  ..|..-.....+|.++ .+|+.
T Consensus       429 ~L~~L~l~~n~-l~--~~~~~~l~~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~-~l~~~  491 (562)
T 3a79_B          429 SILVLNLSSNM-LT--GSVFRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDG  491 (562)
T ss_dssp             TCCEEECCSSC-CC--GGGGSSCCTTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCC-CCCTT
T ss_pred             cCCEEECCCCC-CC--cchhhhhcCcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCC-CCCHH
Confidence            77888887764 22  12333333457888888888872 3322  2333323334555555 45554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.77  E-value=9.6e-09  Score=91.39  Aligned_cols=121  Identities=12%  Similarity=0.064  Sum_probs=89.5

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Cccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PSNI   79 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL   79 (341)
                      +.++++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++.+..|..   .++|
T Consensus        53 ~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  131 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV  131 (220)
T ss_dssp             GGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred             hccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence            678999999999999997 5445589999999999999999997776 5899999999999999998765643   2567


Q ss_pred             cccccccccccCcchhhhHHHH--hhchhccCCCCccccccCCCCccccch
Q 039899           80 EQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVVPGSEISKCFR  128 (341)
Q Consensus        80 ~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~lPg~~iP~wf~  128 (341)
                      +.|+++++ .++.+.  |..+.  ..++.+++++|.+..-.+-..+..|+.
T Consensus       132 ~~L~L~~N-~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~  179 (220)
T 2v70_A          132 RLLSLYDN-QITTVA--PGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR  179 (220)
T ss_dssp             SEEECTTS-CCCCBC--TTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred             CEEECCCC-cCCEEC--HHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence            77777664 333331  22222  237788999999875333223444554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.77  E-value=1.3e-08  Score=95.14  Aligned_cols=81  Identities=21%  Similarity=0.293  Sum_probs=49.6

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cccc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNI   79 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL   79 (341)
                      |.+..+++|+.|+|++|.+..  +|. ++.+++|+.|+|++|.++.+| .+..+++|+.|++++|++.+ +|.+  .++|
T Consensus        57 ~~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L  131 (308)
T 1h6u_A           57 EGVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITD-VTPLAGLSNL  131 (308)
T ss_dssp             TTGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCC-CGGGTTCTTC
T ss_pred             hhhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCC-chhhcCCCCC
Confidence            445566677777777777652  554 666777777777777776665 46666777777777766543 3322  2455


Q ss_pred             cccccccc
Q 039899           80 EQVQVNGC   87 (341)
Q Consensus        80 ~~L~~~~c   87 (341)
                      +.|+++++
T Consensus       132 ~~L~l~~n  139 (308)
T 1h6u_A          132 QVLYLDLN  139 (308)
T ss_dssp             CEEECCSS
T ss_pred             CEEECCCC
Confidence            55555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.76  E-value=2.1e-08  Score=102.04  Aligned_cols=99  Identities=28%  Similarity=0.353  Sum_probs=59.7

Q ss_pred             CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCcccccccccc
Q 039899            7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNG   86 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~~~   86 (341)
                      +++|+.|+|++|++. + +|. ++.  +|+.|+|++|.|+.+|.   .+++|+.|+|++|++.+ +|..+++|+.|++++
T Consensus        99 l~~L~~L~Ls~N~l~-~-ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~  169 (571)
T 3cvr_A           99 PASLEYLDACDNRLS-T-LPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-LPELPTSLEVLSVRN  169 (571)
T ss_dssp             CTTCCEEECCSSCCS-C-CCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCS
T ss_pred             cCCCCEEEccCCCCC-C-cch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc-CCCcCCCcCEEECCC
Confidence            455666666666664 2 555 443  66666666666666665   45667777777776643 666666677777765


Q ss_pred             ccccCcchhhhHHHHhhchhccCCCCccccccCC
Q 039899           87 CASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPG  120 (341)
Q Consensus        87 c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg  120 (341)
                      + .|+.++.    +...++.+++++|.++ .+|.
T Consensus       170 N-~L~~lp~----l~~~L~~L~Ls~N~L~-~lp~  197 (571)
T 3cvr_A          170 N-QLTFLPE----LPESLEALDVSTNLLE-SLPA  197 (571)
T ss_dssp             S-CCSCCCC----CCTTCCEEECCSSCCS-SCCC
T ss_pred             C-CCCCcch----hhCCCCEEECcCCCCC-chhh
Confidence            5 2343332    2255777888888876 3443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.76  E-value=2.3e-08  Score=97.98  Aligned_cols=84  Identities=25%  Similarity=0.393  Sum_probs=68.3

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCC----CCc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQ----LPS   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~----lp~   77 (341)
                      ++.++++|+.|+|++|++. +..+..++.+++|+.|+|++|.++.+|. .+..+++|+.|++++|..++.+|.    -.+
T Consensus       118 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~  196 (452)
T 3zyi_A          118 AFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF  196 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred             hccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence            5788999999999999997 4334458999999999999999998775 788899999999999887777764    235


Q ss_pred             cccccccccc
Q 039899           78 NIEQVQVNGC   87 (341)
Q Consensus        78 sL~~L~~~~c   87 (341)
                      +|+.|+++++
T Consensus       197 ~L~~L~L~~n  206 (452)
T 3zyi_A          197 NLKYLNLGMC  206 (452)
T ss_dssp             TCCEEECTTS
T ss_pred             CCCEEECCCC
Confidence            6777777554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.75  E-value=5.6e-09  Score=86.57  Aligned_cols=88  Identities=19%  Similarity=0.200  Sum_probs=70.2

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC-CChhccCCCCccEEEcCCcccccc-CCC---CCc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFS-LPASINLLSKLWIIELEECQRLQS-LPQ---LPS   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~-LP~si~~Ls~L~~L~Ls~c~~l~~-lP~---lp~   77 (341)
                      .+..+++|+.|+|++|.+. + + ..++.+++|+.|+|++|.++. +|..++.+++|+.|++++|++.+. .|.   -.+
T Consensus        37 ~~~~l~~L~~L~l~~n~l~-~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~  113 (149)
T 2je0_A           37 LTDEFEELEFLSTINVGLT-S-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE  113 (149)
T ss_dssp             CCTTCTTCCEEECTTSCCC-C-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCT
T ss_pred             HHhhcCCCcEEECcCCCCC-C-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCC
Confidence            4578999999999999997 3 4 789999999999999999996 888888899999999999998642 111   134


Q ss_pred             cccccccccccccCcch
Q 039899           78 NIEQVQVNGCASLGTLS   94 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~   94 (341)
                      +|+.|+++++ .+..++
T Consensus       114 ~L~~L~l~~N-~l~~~~  129 (149)
T 2je0_A          114 NLKSLDLFNC-EVTNLN  129 (149)
T ss_dssp             TCCEEECTTC-GGGGST
T ss_pred             CCCEEeCcCC-cccchH
Confidence            6778888776 344443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.75  E-value=9.4e-09  Score=105.33  Aligned_cols=81  Identities=25%  Similarity=0.283  Sum_probs=55.9

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cccc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNI   79 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL   79 (341)
                      |++..|++|+.|+|++|.+. + +|. ++.+++|+.|+|++|.+..+| .+..+++|+.|+|++|++.+ +|.+  .++|
T Consensus        59 ~~l~~l~~L~~L~Ls~N~l~-~-~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L  133 (605)
T 1m9s_A           59 QGIQYLPNVTKLFLNGNKLT-D-IKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQL  133 (605)
T ss_dssp             TTGGGCTTCCEEECTTSCCC-C-CGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCC-CGGGGGCTTC
T ss_pred             hHHccCCCCCEEEeeCCCCC-C-Chh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCC-CccccCCCcc
Confidence            55667778888888888876 3 554 777778888888888777766 57777777777777777643 4432  2456


Q ss_pred             cccccccc
Q 039899           80 EQVQVNGC   87 (341)
Q Consensus        80 ~~L~~~~c   87 (341)
                      +.|+++++
T Consensus       134 ~~L~Ls~N  141 (605)
T 1m9s_A          134 ESLYLGNN  141 (605)
T ss_dssp             SEEECCSS
T ss_pred             CEEECCCC
Confidence            66666544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.75  E-value=2.3e-08  Score=97.65  Aligned_cols=113  Identities=28%  Similarity=0.406  Sum_probs=80.3

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC----C
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL----P   76 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l----p   76 (341)
                      ++.++++|+.|+|++|++. + +|. .+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+.++.+|.-    .
T Consensus       107 ~~~~l~~L~~L~L~~n~l~-~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l  184 (440)
T 3zyj_A          107 AFNGLANLNTLELFDNRLT-T-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL  184 (440)
T ss_dssp             GGTTCSSCCEEECCSSCCS-S-CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred             hccCCccCCEEECCCCcCC-e-eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence            4778999999999999997 3 554 68999999999999999997775 7888999999999998877777641    3


Q ss_pred             ccccccccccccccCcchhhhHHHHhhchhccCCCCccccccCC
Q 039899           77 SNIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVVPG  120 (341)
Q Consensus        77 ~sL~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~lPg  120 (341)
                      ++|+.|+++++ .++.++.+. . ...++.+++++|.+....|+
T Consensus       185 ~~L~~L~L~~n-~l~~~~~~~-~-l~~L~~L~Ls~N~l~~~~~~  225 (440)
T 3zyj_A          185 SNLRYLNLAMC-NLREIPNLT-P-LIKLDELDLSGNHLSAIRPG  225 (440)
T ss_dssp             SSCCEEECTTS-CCSSCCCCT-T-CSSCCEEECTTSCCCEECTT
T ss_pred             cccCeecCCCC-cCccccccC-C-CcccCEEECCCCccCccChh
Confidence            56777777665 333332100 0 11255556666665554443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.74  E-value=3.3e-08  Score=85.91  Aligned_cols=107  Identities=24%  Similarity=0.253  Sum_probs=79.5

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh--ccCCCCccEEEcCCccccccCCCC---Cccccccc
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS--INLLSKLWIIELEECQRLQSLPQL---PSNIEQVQ   83 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s--i~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~   83 (341)
                      .-+.|+++++++.  .+|..+..  +|+.|+|++|.|..+|..  ++.+++|+.|+|++|++.+..|..   .++|+.|+
T Consensus         9 ~~~~l~~s~~~l~--~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A            9 EGTTVDCTGRGLK--EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             ETTEEECTTSCCS--SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCEEEcCCCCcC--cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence            3578999999995  49987764  899999999999988864  899999999999999998766653   35677777


Q ss_pred             cccccccCcchh-hhHHHHhhchhccCCCCccccccCCC
Q 039899           84 VNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLSIVVPGS  121 (341)
Q Consensus        84 ~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~~~lPg~  121 (341)
                      +++. .++.+.. .+.. ...++.+++++|.+++..|+.
T Consensus        85 Ls~N-~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~  121 (192)
T 1w8a_A           85 LGEN-KIKEISNKMFLG-LHQLKTLNLYDNQISCVMPGS  121 (192)
T ss_dssp             CCSC-CCCEECSSSSTT-CTTCCEEECCSSCCCEECTTS
T ss_pred             CCCC-cCCccCHHHhcC-CCCCCEEECCCCcCCeeCHHH
Confidence            7664 2333221 1111 134778889999998866653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.74  E-value=9.9e-09  Score=102.44  Aligned_cols=104  Identities=20%  Similarity=0.222  Sum_probs=52.4

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCC---ccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCC-CCCccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIP---SDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLP-QLPSNI   79 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP---~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP-~lp~sL   79 (341)
                      ++.+++|+.|+|++|++..  +|   ..++.+++|+.|+|++|.++.+|..++.+++|+.|++++|++. .+| .+|++|
T Consensus       357 ~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L  433 (549)
T 2z81_A          357 KGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTL  433 (549)
T ss_dssp             TTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTC
T ss_pred             hhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc-cccchhcCCc
Confidence            3445555555555555542  33   2355556666666666666666655555666666666666543 233 234555


Q ss_pred             cccccccccccCcchhhhHHHHhhchhccCCCCccc
Q 039899           80 EQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLS  115 (341)
Q Consensus        80 ~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~  115 (341)
                      +.|+++++ .++.+.   .. ...++.+++++|.++
T Consensus       434 ~~L~Ls~N-~l~~~~---~~-l~~L~~L~Ls~N~l~  464 (549)
T 2z81_A          434 EVLDVSNN-NLDSFS---LF-LPRLQELYISRNKLK  464 (549)
T ss_dssp             SEEECCSS-CCSCCC---CC-CTTCCEEECCSSCCS
T ss_pred             eEEECCCC-Chhhhc---cc-CChhcEEECCCCccC
Confidence            55555544 222211   00 112555556666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.74  E-value=3.7e-08  Score=89.87  Aligned_cols=113  Identities=19%  Similarity=0.245  Sum_probs=80.7

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCcc-ccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Cc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSD-IGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PS   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~-i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~   77 (341)
                      ++.++++|++|+|++|.+.+  +|.. +..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++.+..|..   .+
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  133 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT  133 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSC--CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             HhcCCCCCCEEECCCCccCe--eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc
Confidence            47788999999999999963  6655 5789999999999999998875 5688999999999999886544432   45


Q ss_pred             cccccccccccccCcchh-hhHHHHhhchhccCCCCccccccC
Q 039899           78 NIEQVQVNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLSIVVP  119 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~~~lP  119 (341)
                      +|+.|+++++ .++.++. .+.. ...++.+++++|.+....|
T Consensus       134 ~L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A          134 KLTYLSLGYN-ELQSLPKGVFDK-LTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             TCCEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSSCCSCCCT
T ss_pred             CCCEEECCCC-cCCccCHhHccC-CcccceeEecCCcCcEeCh
Confidence            7777777665 2333321 1111 1236777788887775444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.74  E-value=1.8e-08  Score=95.10  Aligned_cols=85  Identities=18%  Similarity=0.185  Sum_probs=65.4

Q ss_pred             CCCCCCCCCCcEEeccC-CCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCCCc-
Q 039899            1 LPSLLGLCSLTKLDISD-CNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQLPS-   77 (341)
Q Consensus         1 LPsl~~L~~L~~LdLs~-~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~lp~-   77 (341)
                      +|.+..+++|+.|+|++ |++. +..|..|+.|++|+.|+|++|.|+.+|+ .|.+|++|+.|+|++|++.+..|.... 
T Consensus        24 ip~l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  102 (347)
T 2ifg_A           24 LHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG  102 (347)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred             cCCCCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence            46677888999999996 8886 4334679999999999999999996654 789999999999999998643333222 


Q ss_pred             -ccccccccc
Q 039899           78 -NIEQVQVNG   86 (341)
Q Consensus        78 -sL~~L~~~~   86 (341)
                       .|+.|++.+
T Consensus       103 ~~L~~l~l~~  112 (347)
T 2ifg_A          103 LSLQELVLSG  112 (347)
T ss_dssp             CCCCEEECCS
T ss_pred             CCceEEEeeC
Confidence             266666654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.74  E-value=1.6e-08  Score=98.44  Aligned_cols=79  Identities=14%  Similarity=0.155  Sum_probs=43.7

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC---Cccccccc
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL---PSNIEQVQ   83 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~   83 (341)
                      ++|+.|+|++|.+. +.+|..++.+++|+.|+|++|.+..+ |..++.+++|+.|+|++|++.+..|..   .++|+.|+
T Consensus       275 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          275 SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             SCCCEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             cCceEEEecCcccc-ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            45666666666665 44555566666666666666666633 345666666666666666554333322   23455555


Q ss_pred             cccc
Q 039899           84 VNGC   87 (341)
Q Consensus        84 ~~~c   87 (341)
                      ++++
T Consensus       354 Ls~N  357 (455)
T 3v47_A          354 LSYN  357 (455)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            5444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.74  E-value=7.2e-09  Score=103.46  Aligned_cols=116  Identities=17%  Similarity=0.145  Sum_probs=78.8

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccc-cCCCC---Cc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQ-SLPQL---PS   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~-~lP~l---p~   77 (341)
                      ++.++++|++|+|++|++. +..|..++.+++|++|+|++|.++.+|.. ++++++|++|++++|++.+ .+|..   .+
T Consensus        45 ~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~  123 (549)
T 2z81_A           45 DLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT  123 (549)
T ss_dssp             TTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred             hhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence            4777888888888888887 55567788888888888888888877654 8888888888888888764 23322   34


Q ss_pred             cccccccccccccCcch-hhhHHHHhhchhccCCCCccccccCC
Q 039899           78 NIEQVQVNGCASLGTLS-HALKLCKSIDVEVSKPIPHLSIVVPG  120 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~-~~p~~l~~~l~~l~l~~n~~~~~lPg  120 (341)
                      +|+.|+++++..+..++ ..+.. ...++.+++++|.+.+..|.
T Consensus       124 ~L~~L~L~~n~~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A          124 NLQTLRIGNVETFSEIRRIDFAG-LTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTT-CCEEEEEEEEETTCCEECTT
T ss_pred             CccEEECCCCccccccCHhhhhc-ccccCeeeccCCcccccChh
Confidence            66777776665343332 11111 12366677777777765554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.74  E-value=1.4e-08  Score=95.44  Aligned_cols=77  Identities=19%  Similarity=0.333  Sum_probs=44.0

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCC-CCCccccccccc
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLP-QLPSNIEQVQVN   85 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP-~lp~sL~~L~~~   85 (341)
                      ++|+.|+|++|++. +..|..++.+++|+.|+|++|.++.+ |..++++++|+.|++++|++. .+| .++++|+.|+++
T Consensus        54 ~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~  131 (332)
T 2ft3_A           54 PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIH  131 (332)
T ss_dssp             TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCCTTCCEEECC
T ss_pred             CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccccccCCEEECC
Confidence            45666666666665 33344566666666666666666644 455666666666666666554 333 234455555554


Q ss_pred             c
Q 039899           86 G   86 (341)
Q Consensus        86 ~   86 (341)
                      +
T Consensus       132 ~  132 (332)
T 2ft3_A          132 D  132 (332)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.74  E-value=3e-08  Score=97.93  Aligned_cols=106  Identities=22%  Similarity=0.235  Sum_probs=72.9

Q ss_pred             CCCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCcccc
Q 039899            1 LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIE   80 (341)
Q Consensus         1 LPsl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~   80 (341)
                      +|+++++++|++|++++|++. + +|..+   .+|+.|+|++|.++.+| .++++++|+.|++++|++.+ +|..|++|+
T Consensus       146 lp~~~~l~~L~~L~l~~N~l~-~-lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~  218 (454)
T 1jl5_A          146 LPELQNSSFLKIIDVDNNSLK-K-LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLE  218 (454)
T ss_dssp             CCCCTTCTTCCEEECCSSCCS-C-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCCTTCC
T ss_pred             CcccCCCCCCCEEECCCCcCc-c-cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCcCccc
Confidence            356667777777777777775 2 66543   46777777777777777 58888899999999988754 788888899


Q ss_pred             ccccccccccCcchhhhHHHHhhchhccCCCCcccc
Q 039899           81 QVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSI  116 (341)
Q Consensus        81 ~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~  116 (341)
                      .|+++++ .++.++.+ .. ...++.+++++|.+.+
T Consensus       219 ~L~l~~n-~l~~lp~~-~~-l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          219 SIVAGNN-ILEELPEL-QN-LPFLTTIYADNNLLKT  251 (454)
T ss_dssp             EEECCSS-CCSSCCCC-TT-CTTCCEEECCSSCCSS
T ss_pred             EEECcCC-cCCccccc-CC-CCCCCEEECCCCcCCc
Confidence            8888776 44444321 01 1236667777777764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.74  E-value=3.4e-08  Score=99.89  Aligned_cols=115  Identities=17%  Similarity=0.247  Sum_probs=86.1

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCccccc-cCCCC---Cc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQ-SLPQL---PS   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~-~lP~l---p~   77 (341)
                      ++.++++|++|+|++|.+. +..|..++.+++|++|+|++|.++.+| ..++++++|+.|++++|++.+ .+|..   .+
T Consensus        75 ~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~  153 (606)
T 3vq2_A           75 AWHGLHHLSNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT  153 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT
T ss_pred             HhhchhhcCEeECCCCccc-ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC
Confidence            5789999999999999998 666899999999999999999999777 689999999999999999875 55653   34


Q ss_pred             cccccccccccccCcc-hhhhHHHHhh---chhccCCCCccccccC
Q 039899           78 NIEQVQVNGCASLGTL-SHALKLCKSI---DVEVSKPIPHLSIVVP  119 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l-~~~p~~l~~~---l~~l~l~~n~~~~~lP  119 (341)
                      +|+.|+++++. ++.+ ...+..+.++   +..++++.|.+.+..+
T Consensus       154 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~  198 (606)
T 3vq2_A          154 NLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD  198 (606)
T ss_dssp             TCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECT
T ss_pred             CCCEEEccCCc-ceecChhhhhhhhccccccceeeccCCCcceeCc
Confidence            66777776652 3322 1222333322   3467788887765444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.73  E-value=1.5e-08  Score=94.94  Aligned_cols=78  Identities=23%  Similarity=0.352  Sum_probs=56.7

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCC-CCccccccccc
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQ-LPSNIEQVQVN   85 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~-lp~sL~~L~~~   85 (341)
                      +.|+.|+|++|++. +..+..++.+++|++|+|++|.++.+ |..++.+++|+.|++++|++. .+|. ++++|+.|++.
T Consensus        52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~  129 (330)
T 1xku_A           52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVH  129 (330)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECC
T ss_pred             CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECC
Confidence            56788888888886 33344678888888888888888865 677888888888888888764 4543 45677777765


Q ss_pred             cc
Q 039899           86 GC   87 (341)
Q Consensus        86 ~c   87 (341)
                      ++
T Consensus       130 ~n  131 (330)
T 1xku_A          130 EN  131 (330)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.73  E-value=4.6e-08  Score=85.32  Aligned_cols=62  Identities=21%  Similarity=0.244  Sum_probs=44.8

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCcccccc
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQS   71 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~   71 (341)
                      ++|+.|+|++|++..  +|..++.+++|+.|+|++|.|+.+|. .+.++++|+.|+|++|++.+.
T Consensus        31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i   93 (193)
T 2wfh_A           31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI   93 (193)
T ss_dssp             TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe
Confidence            467777777777753  77777777777777777777776653 577777777777777776543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.73  E-value=2.8e-08  Score=100.45  Aligned_cols=136  Identities=17%  Similarity=0.155  Sum_probs=83.8

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC----Ccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL----PSN   78 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l----p~s   78 (341)
                      +.++++|+.|+|++|.+.+  +|..++.+++|+.|+|++|.+..+ |..+..+++|+.|++++|...+.+|.-    .++
T Consensus       274 ~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  351 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN  351 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred             hccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence            6677788888888888753  787788888888888888888755 457778888888888888776665531    346


Q ss_pred             ccccccccccccCcchhhhHHHH--hhchhccCCCCccccccCCC--CccccchhccCCCeEEEEcCC
Q 039899           79 IEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLSIVVPGS--EISKCFRYQKEDSAMAVTMPL  142 (341)
Q Consensus        79 L~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~~~lPg~--~iP~wf~~~~~g~si~~~Lp~  142 (341)
                      |+.|+++++. +..+...+..+.  ..++.+++++|.+.+..|+.  ..|..-.....++.++...|+
T Consensus       352 L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  418 (606)
T 3t6q_A          352 LRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ  418 (606)
T ss_dssp             CCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC
T ss_pred             CCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc
Confidence            6666665542 222211111221  23667777777776655543  334333334455555544443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.72  E-value=4.7e-08  Score=83.91  Aligned_cols=61  Identities=16%  Similarity=0.371  Sum_probs=36.4

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCcccc
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRL   69 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l   69 (341)
                      ++|+.|+|++|++. +..|..++.+++|+.|+|++|.|+.+|.. +..+++|+.|+|++|++.
T Consensus        33 ~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~   94 (174)
T 2r9u_A           33 TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK   94 (174)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence            45666666666665 44455566666666666666666666554 355666666666666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.72  E-value=1.2e-08  Score=99.29  Aligned_cols=123  Identities=14%  Similarity=0.116  Sum_probs=92.1

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL---PSN   78 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s   78 (341)
                      .+..+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.+..+ |..++.+++|+.|+|++|++.+..|..   .++
T Consensus       294 ~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  372 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN  372 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence            3678899999999999997 66678899999999999999999965 568899999999999999997766643   357


Q ss_pred             ccccccccccccCcchh-hhHHHHhhchhccCCCCccccccCCC-Cccccch
Q 039899           79 IEQVQVNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLSIVVPGS-EISKCFR  128 (341)
Q Consensus        79 L~~L~~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~~~lPg~-~iP~wf~  128 (341)
                      |+.|+++++ .++.++. .+..+ ..++.+++++|.+.+..|.- .+..|+.
T Consensus       373 L~~L~L~~N-~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~l~~~l~  422 (455)
T 3v47_A          373 LKELALDTN-QLKSVPDGIFDRL-TSLQKIWLHTNPWDCSCPRIDYLSRWLN  422 (455)
T ss_dssp             CCEEECCSS-CCSCCCTTTTTTC-TTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred             ccEEECCCC-ccccCCHhHhccC-CcccEEEccCCCcccCCCcchHHHHHHH
Confidence            778888775 3444331 11111 34778889999998766632 3445654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.71  E-value=2.1e-08  Score=93.65  Aligned_cols=107  Identities=21%  Similarity=0.268  Sum_probs=73.4

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Ccccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNIE   80 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL~   80 (341)
                      .+..+++|+.|+|++|.+..  +| .++.+++|+.|+|++|.++.+|. +..+++|+.|++++|++.+ +|.+  .++|+
T Consensus        80 ~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~  154 (308)
T 1h6u_A           80 PLKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITN-ISPLAGLTNLQ  154 (308)
T ss_dssp             GGTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGGGCTTCC
T ss_pred             hHccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCc-CccccCCCCcc
Confidence            36778888999999988863  54 68888888899998888888875 8888888888888887753 3322  25677


Q ss_pred             ccccccccccCcchhhhHHHHhhchhccCCCCccccc
Q 039899           81 QVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIV  117 (341)
Q Consensus        81 ~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~  117 (341)
                      .|+++++ .++.+.. ... ...++.+++++|.+...
T Consensus       155 ~L~l~~n-~l~~~~~-l~~-l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          155 YLSIGNA-QVSDLTP-LAN-LSKLTTLKADDNKISDI  188 (308)
T ss_dssp             EEECCSS-CCCCCGG-GTT-CTTCCEEECCSSCCCCC
T ss_pred             EEEccCC-cCCCChh-hcC-CCCCCEEECCCCccCcC
Confidence            7777665 3333322 111 12366667777776643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.71  E-value=3.8e-08  Score=99.05  Aligned_cols=108  Identities=17%  Similarity=0.141  Sum_probs=74.9

Q ss_pred             CCCCCCCCcEEeccCCCCCCC--CCCccccCCCCCcEEEccCCCCCC-CChh-ccCCCCccEEEcCCccccccCCC-CCc
Q 039899            3 SLLGLCSLTKLDISDCNLGEG--AIPSDIGNICSLKELYLSKNRFFS-LPAS-INLLSKLWIIELEECQRLQSLPQ-LPS   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg--~iP~~i~~L~~L~~L~Ls~N~~~~-LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~-lp~   77 (341)
                      .+.++++|+.|+|++|++. +  .+|..++.+++|+.|+|++|.++. +|.. +..+++|+.|++++|++.+.+|. +|+
T Consensus       372 ~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  450 (562)
T 3a79_B          372 GCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP  450 (562)
T ss_dssp             TCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCT
T ss_pred             hhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcC
Confidence            4667778888888888876 3  233567778888888888888875 7763 67778888888888887776664 446


Q ss_pred             cccccccccccccCcchhhhHHHH--hhchhccCCCCccc
Q 039899           78 NIEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLS  115 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~  115 (341)
                      +|+.|+++++ .++.+   |..+.  ..++.+++++|.++
T Consensus       451 ~L~~L~L~~N-~l~~i---p~~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          451 KVKVLDLHNN-RIMSI---PKDVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             TCSEEECCSS-CCCCC---CTTTTSSCCCSEEECCSSCCC
T ss_pred             cCCEEECCCC-cCccc---ChhhcCCCCCCEEECCCCCCC
Confidence            7888887766 45543   33332  23677778888776

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.70  E-value=3.2e-08  Score=90.44  Aligned_cols=108  Identities=17%  Similarity=0.202  Sum_probs=82.6

Q ss_pred             CCCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Ccc
Q 039899            1 LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSN   78 (341)
Q Consensus         1 LPsl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~s   78 (341)
                      +|.+..+++|+.|+|++|++..  +|. ++.+++|+.|+|++|.++.+|....  ++|+.|+|++|++.+ +|.+  .++
T Consensus        56 l~~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~-~~~l~~l~~  129 (263)
T 1xeu_A           56 LAGMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRD-TDSLIHLKN  129 (263)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSB-SGGGTTCTT
T ss_pred             chHHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCC-ChhhcCccc
Confidence            3567788999999999999973  766 9999999999999999999986444  999999999998854 5543  357


Q ss_pred             ccccccccccccCcchhhhHHHHhhchhccCCCCccccc
Q 039899           79 IEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIV  117 (341)
Q Consensus        79 L~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~  117 (341)
                      |+.|+++++ .++.++. ... ...++.+++++|.+.+.
T Consensus       130 L~~L~Ls~N-~i~~~~~-l~~-l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          130 LEILSIRNN-KLKSIVM-LGF-LSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CCEEECTTS-CCCBCGG-GGG-CTTCCEEECTTSCCCBC
T ss_pred             ccEEECCCC-cCCCChH-Hcc-CCCCCEEECCCCcCcch
Confidence            888888765 3444431 111 23478889999998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.69  E-value=6.1e-08  Score=82.68  Aligned_cols=83  Identities=22%  Similarity=0.297  Sum_probs=66.9

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Cccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PSNI   79 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL   79 (341)
                      +.++++|++|+|++|++. +..|..++.+++|+.|+|++|.++.+|.. +..+++|+.|+|++|++.+..+..   .++|
T Consensus        48 ~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  126 (177)
T 2o6r_A           48 FDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL  126 (177)
T ss_dssp             TTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             hcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCccc
Confidence            678999999999999997 43344579999999999999999988864 689999999999999886433332   3567


Q ss_pred             cccccccc
Q 039899           80 EQVQVNGC   87 (341)
Q Consensus        80 ~~L~~~~c   87 (341)
                      +.|++++.
T Consensus       127 ~~L~l~~N  134 (177)
T 2o6r_A          127 QKIWLHTN  134 (177)
T ss_dssp             CEEECCSS
T ss_pred             CEEEecCC
Confidence            77777665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.69  E-value=2.7e-09  Score=99.55  Aligned_cols=108  Identities=14%  Similarity=0.063  Sum_probs=68.4

Q ss_pred             CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC---CCh--hccCCCCccEEEcCCccccccCCCC----
Q 039899            5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFS---LPA--SINLLSKLWIIELEECQRLQSLPQL----   75 (341)
Q Consensus         5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~---LP~--si~~Ls~L~~L~Ls~c~~l~~lP~l----   75 (341)
                      ..+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.+..   +|.  .++.+++|+.|+|++|++. .+|..    
T Consensus       142 ~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l  219 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAAL  219 (310)
T ss_dssp             TBCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHH
Confidence            35778888888888886 5566778888888888888888752   332  3467778888888888763 33321    


Q ss_pred             ---CccccccccccccccCcc-hhhhHHHH--hhchhccCCCCccc
Q 039899           76 ---PSNIEQVQVNGCASLGTL-SHALKLCK--SIDVEVSKPIPHLS  115 (341)
Q Consensus        76 ---p~sL~~L~~~~c~sL~~l-~~~p~~l~--~~l~~l~l~~n~~~  115 (341)
                         .++|+.|+++++. ++.+ +.....+.  ..++.+++++|.++
T Consensus       220 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             HHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             HhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCC
Confidence               2466677766543 2222 11111111  34667777777776

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.69  E-value=1.5e-08  Score=103.07  Aligned_cols=63  Identities=16%  Similarity=0.219  Sum_probs=34.7

Q ss_pred             CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCcccc
Q 039899            6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRL   69 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l   69 (341)
                      ++++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+|+ .++.+++|+.|+|++|.+.
T Consensus        73 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  136 (597)
T 3oja_B           73 SFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS  136 (597)
T ss_dssp             HCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC
Confidence            4455566666666554 3333455556666666666665554443 3455566666666655554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.69  E-value=5.6e-08  Score=86.85  Aligned_cols=109  Identities=19%  Similarity=0.204  Sum_probs=82.3

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Cc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PS   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~   77 (341)
                      .+.++++|+.|+|++|++.  .+|. .++.+++|+.|+|++|.|+.+|.. +..+++|+.|+|++|++. .+|.-   .+
T Consensus        59 ~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  135 (229)
T 3e6j_A           59 VFDSLINLKELYLGSNQLG--ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT  135 (229)
T ss_dssp             TTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCT
T ss_pred             HhhCccCCcEEECCCCCCC--CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCC
Confidence            4778999999999999996  3664 468999999999999999988864 689999999999999986 66642   35


Q ss_pred             cccccccccccccCcchh-hhHHHHhhchhccCCCCcccc
Q 039899           78 NIEQVQVNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLSI  116 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~~  116 (341)
                      +|+.|++++. .++.++. .+.. ...++.+++++|.+..
T Consensus       136 ~L~~L~L~~N-~l~~~~~~~~~~-l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          136 HLTHLALDQN-QLKSIPHGAFDR-LSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TCSEEECCSS-CCCCCCTTTTTT-CTTCCEEECTTSCBCT
T ss_pred             CCCEEECCCC-cCCccCHHHHhC-CCCCCEEEeeCCCccC
Confidence            6777777664 3444331 1111 1247788899998874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.68  E-value=7e-08  Score=82.34  Aligned_cols=61  Identities=23%  Similarity=0.290  Sum_probs=30.6

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCcccc
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRL   69 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l   69 (341)
                      ++|+.|+|++|++. +..|..++.+++|+.|+|++|.|+.+|.. +..+++|+.|+|++|++.
T Consensus        30 ~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~   91 (170)
T 3g39_A           30 TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK   91 (170)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC
Confidence            34555555555554 33344455555555555555555544443 345555555555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.67  E-value=3.6e-08  Score=92.68  Aligned_cols=60  Identities=23%  Similarity=0.302  Sum_probs=30.5

Q ss_pred             CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899            5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR   68 (341)
Q Consensus         5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~   68 (341)
                      ..+++|+.|++++|.+..  ++. ++.+++|+.|+|++|.++.+|. +..+++|+.|++++|++
T Consensus       196 ~~l~~L~~L~l~~n~l~~--~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          196 ASLTSLHYFTAYVNQITD--ITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             GGCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             cCCCccceeecccCCCCC--Cch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCcc
Confidence            344555555555555541  222 4555555555555555555444 55555555555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.67  E-value=2.2e-08  Score=91.34  Aligned_cols=115  Identities=16%  Similarity=0.264  Sum_probs=83.0

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccc-cCCCC---Cc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQ-SLPQL---PS   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~-~lP~l---p~   77 (341)
                      ++.++++|+.|+|++|.+. +..|..++.+++|+.|+|++|.+..++. .++.+++|+.|++++|++.+ .+|..   .+
T Consensus        71 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~  149 (276)
T 2z62_A           71 AYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT  149 (276)
T ss_dssp             TTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred             HccCCcCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC
Confidence            4788999999999999997 5555779999999999999999997776 79999999999999998865 34542   25


Q ss_pred             cccccccccccccCcch-hhhHHHHhhch----hccCCCCccccccCC
Q 039899           78 NIEQVQVNGCASLGTLS-HALKLCKSIDV----EVSKPIPHLSIVVPG  120 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~-~~p~~l~~~l~----~l~l~~n~~~~~lPg  120 (341)
                      +|+.|+++++. ++.+. ..+..+.+ ++    .+++++|.+.+..|+
T Consensus       150 ~L~~L~Ls~N~-l~~~~~~~~~~l~~-L~~l~l~L~ls~n~l~~~~~~  195 (276)
T 2z62_A          150 NLEHLDLSSNK-IQSIYCTDLRVLHQ-MPLLNLSLDLSLNPMNFIQPG  195 (276)
T ss_dssp             TCCEEECCSSC-CCEECGGGGHHHHT-CTTCCEEEECCSSCCCEECTT
T ss_pred             CCCEEECCCCC-CCcCCHHHhhhhhh-ccccceeeecCCCcccccCcc
Confidence            67777777653 33322 22222222 33    567778877754443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.67  E-value=3.7e-08  Score=99.17  Aligned_cols=111  Identities=18%  Similarity=0.172  Sum_probs=57.7

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC---Cccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL---PSNI   79 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL   79 (341)
                      +..+++|+.|+|++|++.++.+|..++.+++|+.|+|++|.++.+ |..|+++++|+.|+|++|++.+..|..   .++|
T Consensus       465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  544 (635)
T 4g8a_A          465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL  544 (635)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred             cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence            345566666666666544233455566666666666666666643 445666666666666666654333321   1345


Q ss_pred             cccccccccccCcch-hhhHHHHhhchhccCCCCccc
Q 039899           80 EQVQVNGCASLGTLS-HALKLCKSIDVEVSKPIPHLS  115 (341)
Q Consensus        80 ~~L~~~~c~sL~~l~-~~p~~l~~~l~~l~l~~n~~~  115 (341)
                      +.|++++.. +..+. .....+...++.+++++|.+.
T Consensus       545 ~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          545 QVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            555554432 22221 111111233556667777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.67  E-value=3.7e-08  Score=93.97  Aligned_cols=64  Identities=22%  Similarity=0.164  Sum_probs=35.1

Q ss_pred             CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccc
Q 039899            6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQ   70 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~   70 (341)
                      ++++|+.|+|++|++. +..|..++.+++|+.|+|++|.|+.+|. .+..+++|+.|+|++|++.+
T Consensus        62 ~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~  126 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV  126 (361)
T ss_dssp             CCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE
Confidence            4555566666666554 2223345555666666666666554443 35555666666666655543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.66  E-value=2.8e-08  Score=84.88  Aligned_cols=108  Identities=13%  Similarity=0.110  Sum_probs=76.4

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCC-CCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC---Cc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNIC-SLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL---PS   77 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~-~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~   77 (341)
                      |++..+++|+.|+|++|++..  +|. +..+. +|+.|+|++|.++.+ ..++.+++|+.|+|++|++.+..|.+   .+
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~--i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPV--IEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCS--CCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             HhcCCcCCceEEEeeCCCCch--hHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            345677889999999999963  665 55544 999999999999987 57889999999999999886432232   35


Q ss_pred             cccccccccccccCcchhhhHHHH--hhchhccCCCCccc
Q 039899           78 NIEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLS  115 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~  115 (341)
                      +|+.|+++++ .+..++.+ ..+.  ..++.+++++|.+.
T Consensus        89 ~L~~L~L~~N-~i~~~~~~-~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           89 DLTELILTNN-SLVELGDL-DPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             TCCEEECCSC-CCCCGGGG-GGGGGCTTCCEEECCSSGGG
T ss_pred             CCCEEECCCC-cCCcchhh-HhhhcCCCCCEEEecCCCCC
Confidence            7777777665 33443321 0222  23777888888876

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.66  E-value=5.3e-08  Score=84.94  Aligned_cols=67  Identities=24%  Similarity=0.301  Sum_probs=59.7

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQ   70 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~   70 (341)
                      ++.++++|+.|+|++|.+. +..|..+..+++|+.|+|++|.|+.+|. .+..+++|+.|+|++|++..
T Consensus        49 ~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~  116 (193)
T 2wfh_A           49 ELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV  116 (193)
T ss_dssp             GGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             HhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence            5678899999999999998 5555679999999999999999997775 79999999999999999863

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.66  E-value=1.6e-08  Score=101.13  Aligned_cols=66  Identities=32%  Similarity=0.373  Sum_probs=30.7

Q ss_pred             CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC--CCChhccCCCCccEEEcCCcccccc
Q 039899            5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF--SLPASINLLSKLWIIELEECQRLQS   71 (341)
Q Consensus         5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~--~LP~si~~Ls~L~~L~Ls~c~~l~~   71 (341)
                      .++++|+.|+|++|.+. +..|..++.+++|+.|+|++|.+.  .+|..+..+++|+.|++++|++.+.
T Consensus       418 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~  485 (570)
T 2z63_A          418 LSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL  485 (570)
T ss_dssp             TTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred             hcCCCCCEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence            34444444444444444 334444444444444444444443  3444444444444444444444433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.65  E-value=6.5e-08  Score=90.55  Aligned_cols=63  Identities=24%  Similarity=0.359  Sum_probs=36.3

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCcccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRL   69 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l   69 (341)
                      +.++++|++|+|++|.+. +..|..++.+++|+.|+|++|.++.+|..+.  ++|+.|++++|++.
T Consensus        72 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~  134 (330)
T 1xku_A           72 FKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEIT  134 (330)
T ss_dssp             TTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCC
T ss_pred             hccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCccc
Confidence            455556666666666664 3335556666666666666666665555443  45666666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.65  E-value=3.4e-08  Score=97.08  Aligned_cols=82  Identities=21%  Similarity=0.321  Sum_probs=58.3

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PSN   78 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s   78 (341)
                      ++.++++|++|+|++|.+. +..|..++.+++|+.|+|++|.++.+|. .+.++++|+.|+|++|++.+..|..   .++
T Consensus        51 ~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  129 (477)
T 2id5_A           51 EFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN  129 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             HccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence            4667778888888888876 5557778888888888888888887775 3677888888888888776554432   235


Q ss_pred             ccccccc
Q 039899           79 IEQVQVN   85 (341)
Q Consensus        79 L~~L~~~   85 (341)
                      |+.|++.
T Consensus       130 L~~L~l~  136 (477)
T 2id5_A          130 LKSLEVG  136 (477)
T ss_dssp             CCEEEEC
T ss_pred             CCEEECC
Confidence            5555553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.65  E-value=1.7e-08  Score=106.82  Aligned_cols=83  Identities=18%  Similarity=0.211  Sum_probs=55.7

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCC-CccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCCC-----
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAI-PSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQL-----   75 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~i-P~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~l-----   75 (341)
                      ++.++++|++|+|++|... +.+ |..++++++|+.|+|++|.+..+ |..++++++|+.|+|++|.+.+.+|.-     
T Consensus        43 ~~~~l~~L~~LdLs~n~~~-~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  121 (844)
T 3j0a_A           43 SFPFLEQLQLLELGSQYTP-LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN  121 (844)
T ss_dssp             SCSSCCSCSEEEECTTCCC-CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred             HCcccccCeEEeCCCCCCc-cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence            4667777777777777655 556 56677777777777777777744 667777777777777777776644431     


Q ss_pred             Ccccccccccc
Q 039899           76 PSNIEQVQVNG   86 (341)
Q Consensus        76 p~sL~~L~~~~   86 (341)
                      .++|+.|++++
T Consensus       122 L~~L~~L~Ls~  132 (844)
T 3j0a_A          122 LKALTRLDLSK  132 (844)
T ss_dssp             CSSCCEEEEES
T ss_pred             cCCCCEEECCC
Confidence            24556665544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.65  E-value=5.3e-08  Score=98.45  Aligned_cols=83  Identities=14%  Similarity=0.104  Sum_probs=56.5

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCC---CCcc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQ---LPSN   78 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~---lp~s   78 (341)
                      ++.++++|++|+|++|.+. +..|..++.+++|+.|+|++|.+..+ |..++++++|+.|++++|++.+..|.   -.++
T Consensus        52 ~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~  130 (606)
T 3t6q_A           52 TFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT  130 (606)
T ss_dssp             TSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred             HhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence            4677788888888888876 55577778888888888888877743 56777777777777777776542121   1235


Q ss_pred             cccccccc
Q 039899           79 IEQVQVNG   86 (341)
Q Consensus        79 L~~L~~~~   86 (341)
                      |+.|++++
T Consensus       131 L~~L~L~~  138 (606)
T 3t6q_A          131 LESLYLGS  138 (606)
T ss_dssp             CCEEECCS
T ss_pred             ccEEECCC
Confidence            55555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.64  E-value=5.7e-08  Score=92.62  Aligned_cols=110  Identities=16%  Similarity=0.170  Sum_probs=82.1

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCCC-C-----
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLPQ-L-----   75 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP~-l-----   75 (341)
                      ++.++++|+.|+|++|++. +..|..+..+++|+.|+|++|.|+.+ |..+..+++|+.|+|++|++.+ +|. .     
T Consensus        83 ~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~  160 (361)
T 2xot_A           83 AFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGN  160 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC---
T ss_pred             hccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcc
Confidence            4788999999999999997 43345689999999999999999966 5689999999999999998864 543 2     


Q ss_pred             -CccccccccccccccCcch-hhhHHHHh-hchhccCCCCccc
Q 039899           76 -PSNIEQVQVNGCASLGTLS-HALKLCKS-IDVEVSKPIPHLS  115 (341)
Q Consensus        76 -p~sL~~L~~~~c~sL~~l~-~~p~~l~~-~l~~l~l~~n~~~  115 (341)
                       .++|+.|++++. .++.++ .....+.. .++.+++++|.+.
T Consensus       161 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          161 KLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             -CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence             457777887664 344443 11222222 1467788888875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.64  E-value=6.1e-08  Score=98.61  Aligned_cols=84  Identities=17%  Similarity=0.162  Sum_probs=68.5

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PSN   78 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~s   78 (341)
                      ++..+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+|.. ++.+++|+.|+|++|.+.+..|..   .++
T Consensus        94 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  172 (597)
T 3oja_B           94 AFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS  172 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred             HhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence            6788999999999999997 65566689999999999999999988876 488999999999999887766542   356


Q ss_pred             ccccccccc
Q 039899           79 IEQVQVNGC   87 (341)
Q Consensus        79 L~~L~~~~c   87 (341)
                      |+.|+++++
T Consensus       173 L~~L~L~~N  181 (597)
T 3oja_B          173 LQNLQLSSN  181 (597)
T ss_dssp             CCEEECTTS
T ss_pred             CcEEECcCC
Confidence            777777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.64  E-value=4.2e-08  Score=92.18  Aligned_cols=107  Identities=16%  Similarity=0.233  Sum_probs=69.2

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cccc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNI   79 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL   79 (341)
                      |.+..+++|++|+|++|.+.+  +|. ++.+++|+.|+|++|.++.+| .+..+++|+.|++++|++.+ +|.+  .++|
T Consensus        60 ~~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~-~~~~~~l~~L  134 (347)
T 4fmz_A           60 QGIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISD-ISPLANLTKM  134 (347)
T ss_dssp             TTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCC-CGGGTTCTTC
T ss_pred             hhhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccC-chhhccCCce
Confidence            456677788888888888763  655 778888888888888888776 57788888888888887643 3322  3466


Q ss_pred             cccccccccccCcchhhhHHHHhhchhccCCCCccc
Q 039899           80 EQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLS  115 (341)
Q Consensus        80 ~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~  115 (341)
                      +.|++++|..+..+..+ .. ...++.++++++.+.
T Consensus       135 ~~L~l~~n~~~~~~~~~-~~-l~~L~~L~l~~~~~~  168 (347)
T 4fmz_A          135 YSLNLGANHNLSDLSPL-SN-MTGLNYLTVTESKVK  168 (347)
T ss_dssp             CEEECTTCTTCCCCGGG-TT-CTTCCEEECCSSCCC
T ss_pred             eEEECCCCCCcccccch-hh-CCCCcEEEecCCCcC
Confidence            77777666555444321 00 112455555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.64  E-value=7.4e-08  Score=95.08  Aligned_cols=103  Identities=23%  Similarity=0.208  Sum_probs=67.9

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCccccc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQ   81 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~   81 (341)
                      |++.++++|+.|++++|.+. + +|...   ++|+.|+|++|.++.+| .++.+++|+.|++++|++. .+|..+++|+.
T Consensus       189 ~~~~~l~~L~~L~l~~N~l~-~-l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~l~~~~~~L~~  261 (454)
T 1jl5_A          189 PELQNLPFLTAIYADNNSLK-K-LPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLK-TLPDLPPSLEA  261 (454)
T ss_dssp             CCCTTCTTCCEEECCSSCCS-S-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCSCCTTCCE
T ss_pred             ccccCCCCCCEEECCCCcCC-c-CCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCC-cccccccccCE
Confidence            55666667777777777765 2 55432   46777777777777777 4777888888888888774 47777778888


Q ss_pred             cccccccccCcchhhhHHHHhhchhccCCCCcccc
Q 039899           82 VQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSI  116 (341)
Q Consensus        82 L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~  116 (341)
                      |+++++. ++.++..+    ..++.+++++|.+++
T Consensus       262 L~l~~N~-l~~l~~~~----~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          262 LNVRDNY-LTDLPELP----QSLTFLDVSENIFSG  291 (454)
T ss_dssp             EECCSSC-CSCCCCCC----TTCCEEECCSSCCSE
T ss_pred             EECCCCc-ccccCccc----CcCCEEECcCCccCc
Confidence            8776653 44433222    346666777777665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.63  E-value=3e-08  Score=88.65  Aligned_cols=55  Identities=29%  Similarity=0.409  Sum_probs=30.5

Q ss_pred             CCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCC-CCCCCh-hccCCCCccEEEcCC
Q 039899            9 SLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNR-FFSLPA-SINLLSKLWIIELEE   65 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~-~~~LP~-si~~Ls~L~~L~Ls~   65 (341)
                      +|+.|+|++|++. + +|. .++.+++|+.|+|++|. ++.+|. .+.++++|+.|++++
T Consensus        32 ~l~~L~l~~n~l~-~-i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~   89 (239)
T 2xwt_C           32 STQTLKLIETHLR-T-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN   89 (239)
T ss_dssp             TCCEEEEESCCCS-E-ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred             cccEEEEeCCcce-E-ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence            4556666666654 2 333 45555666666666664 555543 455556666666655

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.63  E-value=2.8e-08  Score=95.25  Aligned_cols=81  Identities=16%  Similarity=0.254  Sum_probs=45.7

Q ss_pred             CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCccccccCCC-C---Cccc
Q 039899            5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQSLPQ-L---PSNI   79 (341)
Q Consensus         5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~lP~-l---p~sL   79 (341)
                      .++++|++|+|++|.+. +..|..++.+++|+.|+|++|.+..+| ..++.+++|+.|+|++|++. .+|. .   .++|
T Consensus        66 ~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L  143 (390)
T 3o6n_A           66 DSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL  143 (390)
T ss_dssp             HHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             cccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCC
Confidence            44566666666666665 323345666666666666666666544 34566666666666666554 3332 1   3455


Q ss_pred             cccccccc
Q 039899           80 EQVQVNGC   87 (341)
Q Consensus        80 ~~L~~~~c   87 (341)
                      +.|+++++
T Consensus       144 ~~L~L~~n  151 (390)
T 3o6n_A          144 TTLSMSNN  151 (390)
T ss_dssp             CEEECCSS
T ss_pred             cEEECCCC
Confidence            55555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.63  E-value=2.1e-08  Score=93.52  Aligned_cols=108  Identities=13%  Similarity=0.158  Sum_probs=85.2

Q ss_pred             CCCCCcEEeccCCCCCCCCCCccc--cCCCCCcEEEccCCCCCCCChhccCC-----CCccEEEcCCccccccCCCC---
Q 039899            6 GLCSLTKLDISDCNLGEGAIPSDI--GNICSLKELYLSKNRFFSLPASINLL-----SKLWIIELEECQRLQSLPQL---   75 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~~i--~~L~~L~~L~Ls~N~~~~LP~si~~L-----s~L~~L~Ls~c~~l~~lP~l---   75 (341)
                      ++++|++|+|++|.+. |.+|..+  +.+++|+.|+|++|.++.+|..++.+     ++|+.|+|++|++.+..|..   
T Consensus        93 ~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            5889999999999998 8899987  99999999999999999889888888     99999999999987655442   


Q ss_pred             CccccccccccccccCcchhhhHHH----HhhchhccCCCCccc
Q 039899           76 PSNIEQVQVNGCASLGTLSHALKLC----KSIDVEVSKPIPHLS  115 (341)
Q Consensus        76 p~sL~~L~~~~c~sL~~l~~~p~~l----~~~l~~l~l~~n~~~  115 (341)
                      .++|+.|+++++.-...+ .++..+    ...++.+++++|.+.
T Consensus       172 l~~L~~L~Ls~N~l~~~~-~~~~~~~~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGER-GLISALCPLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             CSSCCEEECCSCTTCHHH-HHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred             CCCCCEEECCCCCcCcch-HHHHHHHhccCCCCCEEECCCCcCc
Confidence            457788888776422211 122222    134788899999887

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.63  E-value=3.9e-08  Score=84.02  Aligned_cols=109  Identities=15%  Similarity=0.115  Sum_probs=77.3

Q ss_pred             CCCCCCC-CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhc-cCCCCccEEEcCCccccccCCCC----
Q 039899            2 PSLLGLC-SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASI-NLLSKLWIIELEECQRLQSLPQL----   75 (341)
Q Consensus         2 Psl~~L~-~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si-~~Ls~L~~L~Ls~c~~l~~lP~l----   75 (341)
                      |.+..+. +|+.|+|++|.+. + + ..++.+++|+.|+|++|.++.+|+.+ ..+++|+.|++++|++ +.+|.+    
T Consensus        35 ~~~~~~~~~L~~L~Ls~N~l~-~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~  110 (176)
T 1a9n_A           35 ENLGATLDQFDAIDFSDNEIR-K-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLA  110 (176)
T ss_dssp             CCGGGGTTCCSEEECCSSCCC-E-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGG
T ss_pred             HHhhhcCCCCCEEECCCCCCC-c-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhh
Confidence            4455555 8999999999997 3 5 68899999999999999999888765 8999999999999988 555541    


Q ss_pred             -CccccccccccccccCcchhhhH-HHH--hhchhccCCCCccc
Q 039899           76 -PSNIEQVQVNGCASLGTLSHALK-LCK--SIDVEVSKPIPHLS  115 (341)
Q Consensus        76 -p~sL~~L~~~~c~sL~~l~~~p~-~l~--~~l~~l~l~~n~~~  115 (341)
                       .++|+.|+++++. +..++.... .+.  ..++.++++.|...
T Consensus       111 ~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          111 SLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             GCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence             2466777776653 222222100 122  23677777776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.62  E-value=2.4e-08  Score=89.31  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=77.0

Q ss_pred             CCCCCCCCcEEeccC-CCCCCCCCC-ccccCCCCCcEEEccCCCCCCCChhccCCCCcc---EEEcCCc-cccccCCC-C
Q 039899            3 SLLGLCSLTKLDISD-CNLGEGAIP-SDIGNICSLKELYLSKNRFFSLPASINLLSKLW---IIELEEC-QRLQSLPQ-L   75 (341)
Q Consensus         3 sl~~L~~L~~LdLs~-~~l~eg~iP-~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~---~L~Ls~c-~~l~~lP~-l   75 (341)
                      ++.++++|+.|+|++ |++. + +| ..++.+++|+.|+|++|.++.+|. ++.+++|+   .|++++| ++ ..+|. .
T Consensus        75 ~f~~l~~L~~L~l~~~n~l~-~-i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l-~~i~~~~  150 (239)
T 2xwt_C           75 SFYNLSKVTHIEIRNTRNLT-Y-IDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYM-TSIPVNA  150 (239)
T ss_dssp             TEESCTTCCEEEEEEETTCC-E-ECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTC-CEECTTT
T ss_pred             HcCCCcCCcEEECCCCCCee-E-cCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcch-hhcCccc
Confidence            467889999999998 8886 3 55 568899999999999999999987 88888888   9999999 55 44443 1


Q ss_pred             ---Ccccc-ccccccccccCcchhhhHHHH--hhchhccCCCCc-cccccC
Q 039899           76 ---PSNIE-QVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPH-LSIVVP  119 (341)
Q Consensus        76 ---p~sL~-~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~-~~~~lP  119 (341)
                         .++|+ .|+++++ .++.++   ....  ..++.+++++|. +....|
T Consensus       151 ~~~l~~L~~~L~l~~n-~l~~i~---~~~~~~~~L~~L~L~~n~~l~~i~~  197 (239)
T 2xwt_C          151 FQGLCNETLTLKLYNN-GFTSVQ---GYAFNGTKLDAVYLNKNKYLTVIDK  197 (239)
T ss_dssp             TTTTBSSEEEEECCSC-CCCEEC---TTTTTTCEEEEEECTTCTTCCEECT
T ss_pred             ccchhcceeEEEcCCC-CCcccC---HhhcCCCCCCEEEcCCCCCcccCCH
Confidence               24566 6766554 233332   2211  347788888884 764333

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.62  E-value=4.5e-08  Score=99.66  Aligned_cols=119  Identities=19%  Similarity=0.227  Sum_probs=82.2

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCcccccccccccc
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCA   88 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~~~c~   88 (341)
                      +|+.|+|++|++. + +|.   .+++|+.|+|++|.|+.+|.   .+++|+.|+|++|++.+ +|.++++|+.|+++++ 
T Consensus       121 ~L~~L~Ls~N~l~-~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~l~~~L~~L~Ls~N-  190 (571)
T 3cvr_A          121 SLKHLDVDNNQLT-M-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPELPESLEALDVSTN-  190 (571)
T ss_dssp             TCCEEECCSSCCS-C-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSS-
T ss_pred             CCCEEECCCCcCC-C-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cchhhCCCCEEECcCC-
Confidence            8899999999997 4 887   68889999999999998886   57889999999998755 7777788888888776 


Q ss_pred             ccCcchhhhHHHH---hhchhccCCCCccccccCCCCccccchhccCCCeEEEEcCCCCC
Q 039899           89 SLGTLSHALKLCK---SIDVEVSKPIPHLSIVVPGSEISKCFRYQKEDSAMAVTMPLFLR  145 (341)
Q Consensus        89 sL~~l~~~p~~l~---~~l~~l~l~~n~~~~~lPg~~iP~wf~~~~~g~si~~~Lp~~~~  145 (341)
                      .++.++.++.++.   ..++.+++++|.++      .||.++..  ..+...+.|..|..
T Consensus       191 ~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~------~lp~~l~~--l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          191 LLESLPAVPVRNHHSEETEIFFRCRENRIT------HIPENILS--LDPTCTIILEDNPL  242 (571)
T ss_dssp             CCSSCCCCC--------CCEEEECCSSCCC------CCCGGGGG--SCTTEEEECCSSSC
T ss_pred             CCCchhhHHHhhhcccccceEEecCCCcce------ecCHHHhc--CCCCCEEEeeCCcC
Confidence            4555544322110   01277888888887      45554432  22344455554443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.62  E-value=5.2e-08  Score=90.29  Aligned_cols=106  Identities=15%  Similarity=0.174  Sum_probs=82.4

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Ccccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNIE   80 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL~   80 (341)
                      .+.++++|+.|+|++|.+..  +| .++.+++|+.|+|++|.++.+| .+..+++|+.|++++|++.+ ++.+  .++|+
T Consensus        85 ~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~  159 (291)
T 1h6t_A           85 PLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-ITVLSRLTKLD  159 (291)
T ss_dssp             GGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCS
T ss_pred             ccccCCCCCEEECCCCcCCC--Ch-hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCc-chhhccCCCCC
Confidence            36789999999999999973  55 4999999999999999999885 68999999999999998854 3432  35788


Q ss_pred             ccccccccccCcchhhhHHHHhhchhccCCCCcccc
Q 039899           81 QVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSI  116 (341)
Q Consensus        81 ~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~  116 (341)
                      .|+++++ .+..+.. ... ...++.+++++|.++.
T Consensus       160 ~L~L~~N-~l~~~~~-l~~-l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          160 TLSLEDN-QISDIVP-LAG-LTKLQNLYLSKNHISD  192 (291)
T ss_dssp             EEECCSS-CCCCCGG-GTT-CTTCCEEECCSSCCCB
T ss_pred             EEEccCC-ccccchh-hcC-CCccCEEECCCCcCCC
Confidence            8888776 3444432 111 2347888999998874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.61  E-value=1.6e-08  Score=100.61  Aligned_cols=78  Identities=22%  Similarity=0.264  Sum_probs=63.8

Q ss_pred             CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCccccccccc
Q 039899            6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVN   85 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~~   85 (341)
                      .+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+++ ++.+++|+.|+|++|.+.+ +|.. ++|+.|+++
T Consensus        32 ~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~~~-~~L~~L~L~  107 (487)
T 3oja_A           32 SAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LLVG-PSIETLHAA  107 (487)
T ss_dssp             TGGGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EEEC-TTCCEEECC
T ss_pred             cCCCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CCCC-CCcCEEECc
Confidence            3458999999999998 6566789999999999999999996665 9999999999999998754 4432 577777776


Q ss_pred             cc
Q 039899           86 GC   87 (341)
Q Consensus        86 ~c   87 (341)
                      ++
T Consensus       108 ~N  109 (487)
T 3oja_A          108 NN  109 (487)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.60  E-value=4.1e-08  Score=100.70  Aligned_cols=65  Identities=20%  Similarity=0.181  Sum_probs=40.6

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCcccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRL   69 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l   69 (341)
                      +.++++|++|+|++|.+. +..|..++.+++|+.|+|++|.++.+|. .++++++|++|++++|++.
T Consensus        45 ~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~  110 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ  110 (680)
T ss_dssp             GGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred             HhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC
Confidence            455666666666666665 4445556666666666666666666664 4666666666666666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.60  E-value=1.2e-07  Score=94.69  Aligned_cols=83  Identities=22%  Similarity=0.272  Sum_probs=56.1

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCccccccCCCC----Cc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQSLPQL----PS   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~lP~l----p~   77 (341)
                      ++.++++|++|+|++|++. +..|..++.+++|++|+|++|.++.+| ..++++++|+.|++++|++.+ +|..    ..
T Consensus        47 ~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~  124 (570)
T 2z63_A           47 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLK  124 (570)
T ss_dssp             TTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCT
T ss_pred             HhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccccc-CCCccccccc
Confidence            4677788888888888876 433556777888888888888877555 567777777777777776542 3321    23


Q ss_pred             cccccccccc
Q 039899           78 NIEQVQVNGC   87 (341)
Q Consensus        78 sL~~L~~~~c   87 (341)
                      +|+.|+++++
T Consensus       125 ~L~~L~L~~n  134 (570)
T 2z63_A          125 TLKELNVAHN  134 (570)
T ss_dssp             TCCEEECCSS
T ss_pred             cccEEecCCC
Confidence            5555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.60  E-value=6.1e-08  Score=98.54  Aligned_cols=84  Identities=25%  Similarity=0.243  Sum_probs=72.4

Q ss_pred             CCCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccC-CCC---C
Q 039899            1 LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSL-PQL---P   76 (341)
Q Consensus         1 LPsl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~l-P~l---p   76 (341)
                      +|.++.|++|+.|+|++|++.  .+|..++.+++|+.|+|++|.|+.+| .++.|++|+.|+|++|++.+.+ |..   .
T Consensus       456 lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l  532 (567)
T 1dce_A          456 LCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSC  532 (567)
T ss_dssp             CCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGC
T ss_pred             CcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcC
Confidence            577889999999999999996  49999999999999999999999999 8999999999999999987654 542   3


Q ss_pred             ccccccccccc
Q 039899           77 SNIEQVQVNGC   87 (341)
Q Consensus        77 ~sL~~L~~~~c   87 (341)
                      ++|+.|+++++
T Consensus       533 ~~L~~L~L~~N  543 (567)
T 1dce_A          533 PRLVLLNLQGN  543 (567)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEEecCC
Confidence            46667777654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.60  E-value=5.5e-08  Score=96.79  Aligned_cols=41  Identities=17%  Similarity=0.109  Sum_probs=21.2

Q ss_pred             CCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccC
Q 039899           32 ICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSL   72 (341)
Q Consensus        32 L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~l   72 (341)
                      +++|+.|+|++|.++.+ |..++.+++|+.|+|++|.+.+.+
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence            44555555555555533 334555555555555555554433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.59  E-value=9.7e-08  Score=81.45  Aligned_cols=65  Identities=26%  Similarity=0.319  Sum_probs=58.2

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCcccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRL   69 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l   69 (341)
                      ++.++++|+.|+|++|++. + +|. .++.+++|+.|+|++|.|+.+|. .+..+++|+.|+|++|.+.
T Consensus        49 ~~~~l~~L~~L~Ls~N~l~-~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           49 VFDRLTQLTRLDLDNNQLT-V-LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             TTTTCTTCSEEECCSSCCC-C-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hhcCcccCCEEECCCCCcC-c-cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            4788999999999999997 4 555 46899999999999999998887 5899999999999999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.59  E-value=7.2e-08  Score=98.79  Aligned_cols=105  Identities=15%  Similarity=0.177  Sum_probs=64.9

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cccccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNIEQ   81 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL~~   81 (341)
                      +..|++|+.|+|++|.+..  +| .++.+++|+.|+|++|.+..+| .+..|++|+.|+|++|++.+ ++.+  .++|+.
T Consensus        83 l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~  157 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-ITVLSRLTKLDT  157 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC-CGGGGSCTTCSE
T ss_pred             hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC-chhhcccCCCCE
Confidence            5667777888888887752  44 6777777788888777777765 47777777777777777643 3322  346666


Q ss_pred             cccccccccCcchhhhHHHHhhchhccCCCCcccc
Q 039899           82 VQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSI  116 (341)
Q Consensus        82 L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~  116 (341)
                      |+++++ .+..+.. ... ...|+.|++++|.++.
T Consensus       158 L~Ls~N-~l~~~~~-l~~-l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          158 LSLEDN-QISDIVP-LAG-LTKLQNLYLSKNHISD  189 (605)
T ss_dssp             EECCSS-CCCCCGG-GTT-CTTCCEEECCSSCCCB
T ss_pred             EECcCC-cCCCchh-hcc-CCCCCEEECcCCCCCC
Confidence            666555 2332221 000 1235566666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.59  E-value=9.1e-08  Score=94.12  Aligned_cols=81  Identities=23%  Similarity=0.313  Sum_probs=49.5

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCC-CCCccccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLP-QLPSNIEQ   81 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP-~lp~sL~~   81 (341)
                      .+..+++|+.|++++|.+. + ++. ++.+++|+.|+|++|.+..+|. +..+++|+.|++++|++.+..| .-.++|+.
T Consensus       238 ~l~~l~~L~~L~l~~n~l~-~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~  313 (466)
T 1o6v_A          238 TLASLTNLTDLDLANNQIS-N-LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTY  313 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCC-C-CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSE
T ss_pred             hhhcCCCCCEEECCCCccc-c-chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCE
Confidence            4556667777777777775 3 333 6667777777777777776665 6666777777777766543221 11245555


Q ss_pred             cccccc
Q 039899           82 VQVNGC   87 (341)
Q Consensus        82 L~~~~c   87 (341)
                      |+++++
T Consensus       314 L~L~~n  319 (466)
T 1o6v_A          314 LTLYFN  319 (466)
T ss_dssp             EECCSS
T ss_pred             EECcCC
Confidence            555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.57  E-value=1.2e-07  Score=97.45  Aligned_cols=70  Identities=27%  Similarity=0.304  Sum_probs=37.7

Q ss_pred             CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCcccccccc
Q 039899            6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQV   84 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~   84 (341)
                      .+++|++|+|++|++..  +|.   .+++|+.|+|++|.++.+|..   +++|+.|+|++|++. .+|..|++|+.|++
T Consensus        99 ~l~~L~~L~Ls~N~l~~--l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L  168 (622)
T 3g06_A           99 LPPGLLELSIFSNPLTH--LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SLPALPSELCKLWA  168 (622)
T ss_dssp             CCTTCCEEEECSCCCCC--CCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCCCCCTTCCEEEC
T ss_pred             CCCCCCEEECcCCcCCC--CCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCC-CcCCccCCCCEEEC
Confidence            45566666666666642  554   345566666666666655543   255555555555443 34444444444433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.56  E-value=1.3e-07  Score=81.04  Aligned_cols=65  Identities=25%  Similarity=0.289  Sum_probs=58.7

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCcc-ccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCcccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSD-IGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRL   69 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~-i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l   69 (341)
                      .+.++++|+.|+|++|++. + +|.. ++.+++|+.|+|++|.|+.+|.. +..+++|+.|+|++|.+.
T Consensus        52 ~~~~l~~L~~L~Ls~N~l~-~-i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           52 VFDHLVNLQQLYFNSNKLT-A-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             TTTTCTTCCEEECCSSCCC-C-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             HhcCCcCCCEEECCCCCCC-c-cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            4788999999999999997 3 7665 68999999999999999999875 999999999999999875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.56  E-value=1.6e-07  Score=87.95  Aligned_cols=81  Identities=26%  Similarity=0.299  Sum_probs=63.2

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccc--cCCCCCc--
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQ--SLPQLPS--   77 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~--~lP~lp~--   77 (341)
                      ++.++++|++|+|++|.+.+  +|..+.  ++|+.|+|++|.+..+|. .+..+++|+.|++++|.+..  ..|....  
T Consensus        97 ~~~~l~~L~~L~L~~n~l~~--l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  172 (332)
T 2ft3_A           97 AFSPLRKLQKLYISKNHLVE--IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL  172 (332)
T ss_dssp             GSTTCTTCCEEECCSSCCCS--CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred             HhhCcCCCCEEECCCCcCCc--cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence            47889999999999999964  888776  899999999999998876 58899999999999998842  3332211  


Q ss_pred             cccccccccc
Q 039899           78 NIEQVQVNGC   87 (341)
Q Consensus        78 sL~~L~~~~c   87 (341)
                      +|+.|++.++
T Consensus       173 ~L~~L~l~~n  182 (332)
T 2ft3_A          173 KLNYLRISEA  182 (332)
T ss_dssp             CCSCCBCCSS
T ss_pred             ccCEEECcCC
Confidence            5666666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.56  E-value=1.7e-07  Score=89.68  Aligned_cols=84  Identities=17%  Similarity=0.162  Sum_probs=68.9

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PSN   78 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~s   78 (341)
                      ++.++++|++|+|++|.+. +..|..++.+++|+.|+|++|.++.+|.. ++++++|+.|++++|++.+..|..   .++
T Consensus        88 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  166 (390)
T 3o6n_A           88 AFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS  166 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred             hccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC
Confidence            5788999999999999997 55566789999999999999999999976 488999999999999887655542   356


Q ss_pred             ccccccccc
Q 039899           79 IEQVQVNGC   87 (341)
Q Consensus        79 L~~L~~~~c   87 (341)
                      |+.|++.++
T Consensus       167 L~~L~l~~n  175 (390)
T 3o6n_A          167 LQNLQLSSN  175 (390)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECCCC
Confidence            777777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.55  E-value=1.6e-07  Score=92.84  Aligned_cols=62  Identities=21%  Similarity=0.238  Sum_probs=39.2

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCcccc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRL   69 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l   69 (341)
                      |++..+++|++|+|++|++. + +|  ++.+++|+.|+|++|.++.+|  ++++++|+.|++++|++.
T Consensus        58 ~~l~~l~~L~~L~Ls~n~l~-~-~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~  119 (457)
T 3bz5_A           58 TGIEKLTGLTKLICTSNNIT-T-LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLT  119 (457)
T ss_dssp             TTGGGCTTCSEEECCSSCCS-C-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCS
T ss_pred             hhhcccCCCCEEEccCCcCC-e-Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCC
Confidence            45566666777777777665 2 44  666666666666666666654  566666666666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.55  E-value=1.4e-07  Score=96.84  Aligned_cols=71  Identities=31%  Similarity=0.389  Sum_probs=44.5

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCccccccccccc
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGC   87 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~~~c   87 (341)
                      ++|+.|+|++|++..  +|.   .+++|+.|+|++|.|+.+|.   .+++|+.|+|++|++. .+|..+++|+.|++.++
T Consensus        61 ~~L~~L~L~~N~l~~--lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-~l~~~l~~L~~L~L~~N  131 (622)
T 3g06_A           61 AHITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT-HLPALPSGLCKLWIFGN  131 (622)
T ss_dssp             TTCSEEEECSCCCSC--CCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC-CCCCCCTTCCEEECCSS
T ss_pred             CCCcEEEecCCCCCC--CCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC-CCCCCCCCcCEEECCCC
Confidence            567777777777653  665   45667777777777776665   5566666666666553 35555556666655444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.55  E-value=2.1e-07  Score=95.45  Aligned_cols=65  Identities=17%  Similarity=0.178  Sum_probs=33.5

Q ss_pred             CCCCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCcccccc
Q 039899            5 LGLCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQS   71 (341)
Q Consensus         5 ~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~   71 (341)
                      .++++|++|+|++|.+..  +|. .++.+++|++|+|++|.++.+| ..++++++|+.|++++|++.+.
T Consensus        70 ~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  136 (680)
T 1ziw_A           70 QKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST  136 (680)
T ss_dssp             HHCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC
T ss_pred             hcccCcCEEECCCCccCc--cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccccc
Confidence            344555555555555542  443 3555555555555555555444 3455555555555555554443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.54  E-value=3.2e-08  Score=93.61  Aligned_cols=108  Identities=21%  Similarity=0.230  Sum_probs=79.4

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCcc-ccCCCCCcEEEccCCCCCCCCh--hccCCCCccEEEcCCccccccCC-CC---
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSD-IGNICSLKELYLSKNRFFSLPA--SINLLSKLWIIELEECQRLQSLP-QL---   75 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~-i~~L~~L~~L~Ls~N~~~~LP~--si~~Ls~L~~L~Ls~c~~l~~lP-~l---   75 (341)
                      ++.++++|++|+|++|.+..  +|.. ++.+++|+.|+|++|.++.+|.  .+..+++|+.|++++|...+.++ ..   
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  172 (353)
T 2z80_A           95 SFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG  172 (353)
T ss_dssp             TTTTCTTCCEEECCSSCCSS--CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             hcCCCCCCCEEECCCCcCCc--CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence            47889999999999999973  7766 8999999999999999999987  78999999999999996555553 22   


Q ss_pred             CccccccccccccccCcchhhhHHHH--hhchhccCCCCccc
Q 039899           76 PSNIEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLS  115 (341)
Q Consensus        76 p~sL~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~  115 (341)
                      .++|+.|++.++. +..+  .|..+.  ..++.+++++|.+.
T Consensus       173 l~~L~~L~l~~n~-l~~~--~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          173 LTFLEELEIDASD-LQSY--EPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             CCEEEEEEEEETT-CCEE--CTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCEEECCCCC-cCcc--CHHHHhccccCCeecCCCCccc
Confidence            3467777776553 2221  122221  23666677777664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.53  E-value=1.3e-07  Score=99.99  Aligned_cols=84  Identities=15%  Similarity=0.122  Sum_probs=65.4

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChh--ccCCCCccEEEcCCccccccCCC----C
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPAS--INLLSKLWIIELEECQRLQSLPQ----L   75 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~s--i~~Ls~L~~L~Ls~c~~l~~lP~----l   75 (341)
                      ++.++++|++|+|++|++. +..|..++.+++|+.|+|++|.+. .+|..  ++++++|+.|+|++|.+.+..|.    -
T Consensus        68 ~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~  146 (844)
T 3j0a_A           68 AFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK  146 (844)
T ss_dssp             TTSSCTTCCEEECTTCCCC-EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred             HhcCCCCCCEEECCCCcCc-ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence            4788889999999999987 666888999999999999999888 46655  88899999999999888664331    1


Q ss_pred             Cccccccccccc
Q 039899           76 PSNIEQVQVNGC   87 (341)
Q Consensus        76 p~sL~~L~~~~c   87 (341)
                      .++|+.|+++++
T Consensus       147 L~~L~~L~Ls~N  158 (844)
T 3j0a_A          147 LNSLKSIDFSSN  158 (844)
T ss_dssp             CSSCCEEEEESS
T ss_pred             CCCCCEEECCCC
Confidence            346677776554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.51  E-value=2.2e-07  Score=91.74  Aligned_cols=76  Identities=14%  Similarity=0.107  Sum_probs=45.3

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCC-CCcccccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQ-LPSNIEQV   82 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~-lp~sL~~L   82 (341)
                      +..+++|+.|++++|++. + +|  ++.+++|+.|+|++|.++.++  ++.+++|+.|++++|++.+ +|- -.++|+.|
T Consensus       166 ~~~l~~L~~L~ls~n~l~-~-l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip~~~l~~L~~L  238 (457)
T 3bz5_A          166 VTPQTQLTTLDCSFNKIT-E-LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-IDVTPLTQLTYF  238 (457)
T ss_dssp             CTTCTTCCEEECCSSCCC-C-CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CCCTTCTTCSEE
T ss_pred             cccCCcCCEEECCCCccc-e-ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cCccccCCCCEE
Confidence            456677777777777775 2 55  666666666666666666553  5666666666666666544 441 12344555


Q ss_pred             cccc
Q 039899           83 QVNG   86 (341)
Q Consensus        83 ~~~~   86 (341)
                      ++++
T Consensus       239 ~l~~  242 (457)
T 3bz5_A          239 DCSV  242 (457)
T ss_dssp             ECCS
T ss_pred             EeeC
Confidence            4443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.50  E-value=1.9e-07  Score=91.81  Aligned_cols=84  Identities=18%  Similarity=0.224  Sum_probs=58.9

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PSN   78 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s   78 (341)
                      .+.++++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+|. .+..+++|+.|+|++|.+.+..+..   .++
T Consensus       123 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~  201 (477)
T 2id5_A          123 MFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR  201 (477)
T ss_dssp             TTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTT
T ss_pred             HccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcc
Confidence            4677888888888888886 5556678888888888888888887774 5777777777777777765433321   234


Q ss_pred             ccccccccc
Q 039899           79 IEQVQVNGC   87 (341)
Q Consensus        79 L~~L~~~~c   87 (341)
                      |+.|++.++
T Consensus       202 L~~L~l~~~  210 (477)
T 2id5_A          202 LKVLEISHW  210 (477)
T ss_dssp             CCEEEEECC
T ss_pred             cceeeCCCC
Confidence            555555444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.50  E-value=2e-08  Score=93.94  Aligned_cols=104  Identities=17%  Similarity=0.204  Sum_probs=76.4

Q ss_pred             CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCccccccccc
Q 039899            6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVN   85 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~~   85 (341)
                      .+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+++ +..+++|+.|++++|++.+ +|. +++|+.|++.
T Consensus        32 ~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~-l~~-~~~L~~L~l~  107 (317)
T 3o53_A           32 SAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LLV-GPSIETLHAA  107 (317)
T ss_dssp             TGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE-EEE-CTTCCEEECC
T ss_pred             cCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc-ccC-CCCcCEEECC
Confidence            4568999999999997 5556789999999999999999997765 9999999999999998753 443 2678888876


Q ss_pred             cccccCcchhhhHHHHhhchhccCCCCccccc
Q 039899           86 GCASLGTLSHALKLCKSIDVEVSKPIPHLSIV  117 (341)
Q Consensus        86 ~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~  117 (341)
                      ++. +..+.   ......++.+++++|.+.+.
T Consensus       108 ~n~-l~~~~---~~~~~~L~~L~l~~N~l~~~  135 (317)
T 3o53_A          108 NNN-ISRVS---CSRGQGKKNIYLANNKITML  135 (317)
T ss_dssp             SSC-CSEEE---ECCCSSCEEEECCSSCCCSG
T ss_pred             CCc-cCCcC---ccccCCCCEEECCCCCCCCc
Confidence            652 22221   11112356666777766643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.49  E-value=1.5e-07  Score=87.88  Aligned_cols=60  Identities=13%  Similarity=0.008  Sum_probs=27.6

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-Chhc-cCCCCccEEEcCCccc
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSL-PASI-NLLSKLWIIELEECQR   68 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~L-P~si-~~Ls~L~~L~Ls~c~~   68 (341)
                      ++|+.|+|++|.+. +..|..++.+++|+.|+|++|.+..+ |..+ ..+++|+.|+|++|++
T Consensus       120 ~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          120 QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             SSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             CCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence            34444444444444 22233444455555555555555532 2223 2445555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.49  E-value=4e-07  Score=80.80  Aligned_cols=110  Identities=16%  Similarity=0.157  Sum_probs=85.8

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL---PSN   78 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l---p~s   78 (341)
                      ++..+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.|+.+|.. +..+++|+.|+|++|++.+..|..   .++
T Consensus        51 ~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  129 (220)
T 2v9t_B           51 AFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN  129 (220)
T ss_dssp             SSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             HhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC
Confidence            5788999999999999998 66688999999999999999999999975 688999999999999987655543   357


Q ss_pred             ccccccccccccCcchh-hhHHHHhhchhccCCCCccc
Q 039899           79 IEQVQVNGCASLGTLSH-ALKLCKSIDVEVSKPIPHLS  115 (341)
Q Consensus        79 L~~L~~~~c~sL~~l~~-~p~~l~~~l~~l~l~~n~~~  115 (341)
                      |+.|+++++ .++.+.. .+.. ...++.+++++|.+.
T Consensus       130 L~~L~L~~N-~l~~~~~~~~~~-l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          130 LNLLSLYDN-KLQTIAKGTFSP-LRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCEEECCSS-CCSCCCTTTTTT-CTTCCEEECCSSCEE
T ss_pred             CCEEECCCC-cCCEECHHHHhC-CCCCCEEEeCCCCcC
Confidence            777887665 3333321 1111 123778889999885

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.43  E-value=1.8e-09  Score=94.21  Aligned_cols=60  Identities=18%  Similarity=0.153  Sum_probs=28.6

Q ss_pred             CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899            6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR   68 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~   68 (341)
                      .+++|+.|+|++|.+..  +| .++.+++|+.|+|++|.++.+|..+..+++|+.|++++|++
T Consensus        46 ~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l  105 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI  105 (198)
T ss_dssp             HTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEEC
T ss_pred             cCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcC
Confidence            34444555555544431  44 44444455555555554444444444444455555554444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.40  E-value=3.2e-07  Score=90.17  Aligned_cols=80  Identities=23%  Similarity=0.286  Sum_probs=46.7

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCC-CCCcccccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLP-QLPSNIEQV   82 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP-~lp~sL~~L   82 (341)
                      ++.+++|+.|++++|.+.+  ++ .++.+++|+.|+|++|.+..++. +..+++|+.|++++|++.+..| .-.++|+.|
T Consensus       217 ~~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L  292 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKD--IG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNL  292 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             ccccCCCCEEECCCCCccc--ch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCccccccCCCccCeE
Confidence            3455666677777766652  33 46666667777777776666554 6666667777777666543211 112455555


Q ss_pred             ccccc
Q 039899           83 QVNGC   87 (341)
Q Consensus        83 ~~~~c   87 (341)
                      ++.++
T Consensus       293 ~L~~n  297 (466)
T 1o6v_A          293 ELNEN  297 (466)
T ss_dssp             ECCSS
T ss_pred             EcCCC
Confidence            55443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.36  E-value=6.6e-08  Score=90.28  Aligned_cols=87  Identities=16%  Similarity=0.271  Sum_probs=48.1

Q ss_pred             CCCCCCCcEEeccCCCCCCCC-CCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCcc-ccc-cCCCC---C
Q 039899            4 LLGLCSLTKLDISDCNLGEGA-IPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQ-RLQ-SLPQL---P   76 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~-iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~-~l~-~lP~l---p   76 (341)
                      +.++++|+.|+|++|.+. +. +|..++.+++|+.|+|++|.+. ..|..++.+++|+.|+|++|. +.+ .+|..   .
T Consensus        89 ~~~~~~L~~L~L~~~~l~-~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~  167 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIE-VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  167 (336)
T ss_dssp             CCCCBCCCEEECTTCEEC-HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             hccCCCCCEEEccCCCcC-HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence            445566666666666654 33 5555666666666666666665 455566666666666666663 322 12221   2


Q ss_pred             ccccccccccccccC
Q 039899           77 SNIEQVQVNGCASLG   91 (341)
Q Consensus        77 ~sL~~L~~~~c~sL~   91 (341)
                      ++|+.|++.+|..+.
T Consensus       168 ~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          168 SRLDELNLSWCFDFT  182 (336)
T ss_dssp             TTCCEEECCCCTTCC
T ss_pred             CCCCEEcCCCCCCcC
Confidence            355566665554443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.34  E-value=5.1e-07  Score=84.98  Aligned_cols=66  Identities=26%  Similarity=0.111  Sum_probs=58.3

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCcccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRL   69 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l   69 (341)
                      +|.+|++|+.|+|++|+|. +..|..|+.|++|+.|+|++|.|+.+|..+.....|+.|+|.+|++.
T Consensus        51 ~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           51 DLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             GSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             HhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence            4889999999999999998 76677899999999999999999999986655555999999999875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.33  E-value=2.8e-07  Score=86.02  Aligned_cols=84  Identities=14%  Similarity=0.288  Sum_probs=50.1

Q ss_pred             CCCCCCcEEeccCC-CCCCCCCCccccCCC-CCcEEEccCC--CCC--CCChhccCCCCccEEEcCCccc-cccCC-CC-
Q 039899            5 LGLCSLTKLDISDC-NLGEGAIPSDIGNIC-SLKELYLSKN--RFF--SLPASINLLSKLWIIELEECQR-LQSLP-QL-   75 (341)
Q Consensus         5 ~~L~~L~~LdLs~~-~l~eg~iP~~i~~L~-~L~~L~Ls~N--~~~--~LP~si~~Ls~L~~L~Ls~c~~-l~~lP-~l-   75 (341)
                      .++++|+.|+|++| .+....+|..++.++ +|+.|+|++|  .++  .+|..+..+++|+.|++++|.. ....+ .+ 
T Consensus       165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~  244 (336)
T 2ast_B          165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  244 (336)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence            34667777777777 665212555566677 7777777777  343  5666666677777777777763 22222 11 


Q ss_pred             -Ccccccccccccc
Q 039899           76 -PSNIEQVQVNGCA   88 (341)
Q Consensus        76 -p~sL~~L~~~~c~   88 (341)
                       .++|+.|++++|.
T Consensus       245 ~l~~L~~L~l~~~~  258 (336)
T 2ast_B          245 QLNYLQHLSLSRCY  258 (336)
T ss_dssp             GCTTCCEEECTTCT
T ss_pred             CCCCCCEeeCCCCC
Confidence             2456666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.26  E-value=5.6e-07  Score=85.25  Aligned_cols=51  Identities=20%  Similarity=0.214  Sum_probs=26.3

Q ss_pred             CCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCC-CCCh-hccCCCCccE
Q 039899            8 CSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFF-SLPA-SINLLSKLWI   60 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~-~LP~-si~~Ls~L~~   60 (341)
                      ++++.|+|++|+|..  ||. .+.++++|+.|+|++|.+. .+|. .+.+|++|..
T Consensus        30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~   83 (350)
T 4ay9_X           30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE   83 (350)
T ss_dssp             TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred             CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence            345566666666542  543 3555666666666665543 3443 3444544443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.23  E-value=4.8e-08  Score=85.04  Aligned_cols=104  Identities=17%  Similarity=0.198  Sum_probs=79.4

Q ss_pred             CCCCCcEEeccCCCCCCCCCCc------cccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCC---
Q 039899            6 GLCSLTKLDISDCNLGEGAIPS------DIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLP---   76 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~------~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp---   76 (341)
                      ....++.++++.+.+. |.+|.      .++.+++|+.|+|++|.++.+| .+..+++|+.|++++|++. .+|...   
T Consensus        16 ~~~~l~~l~l~~~~l~-~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           16 ERKSVVATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             HTTCCCCTTCSEEECC-BCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             hcccccCcchheeEec-cccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence            3456777888888887 77776      8999999999999999999999 9999999999999999885 677542   


Q ss_pred             ccccccccccccccCcchhhhHHHHhhchhccCCCCccc
Q 039899           77 SNIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLS  115 (341)
Q Consensus        77 ~sL~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~  115 (341)
                      ++|+.|+++++ .+..++. ... ...++.+++++|.+.
T Consensus        93 ~~L~~L~L~~N-~l~~l~~-~~~-l~~L~~L~l~~N~i~  128 (198)
T 1ds9_A           93 DTLEELWISYN-QIASLSG-IEK-LVNLRVLYMSNNKIT  128 (198)
T ss_dssp             HHCSEEEEEEE-ECCCHHH-HHH-HHHSSEEEESEEECC
T ss_pred             CcCCEEECcCC-cCCcCCc-ccc-CCCCCEEECCCCcCC
Confidence            57888888776 4454431 111 234677777777765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.14  E-value=1.5e-06  Score=80.08  Aligned_cols=66  Identities=23%  Similarity=0.190  Sum_probs=55.0

Q ss_pred             CCCCCcEEeccCCCCCCC--CCCccccCCCCCcEEEccCCCCCCCChhccCCC--CccEEEcCCccccccCC
Q 039899            6 GLCSLTKLDISDCNLGEG--AIPSDIGNICSLKELYLSKNRFFSLPASINLLS--KLWIIELEECQRLQSLP   73 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg--~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls--~L~~L~Ls~c~~l~~lP   73 (341)
                      ++++|+.|+|++|++. +  .+|..++.+++|+.|+|++|.|..+. .+..+.  +|+.|+|++|.+.+.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~-~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCC-CCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCC-CCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence            4788999999999997 5  45677788999999999999999773 455555  89999999999887665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.12  E-value=9.6e-07  Score=84.44  Aligned_cols=66  Identities=21%  Similarity=0.133  Sum_probs=40.5

Q ss_pred             CCCCCCCcEEeccCCCCCC--CCCCccc-------cCCCCCcEEEccCCCCCC-----CChhccCCCCccEEEcCCcccc
Q 039899            4 LLGLCSLTKLDISDCNLGE--GAIPSDI-------GNICSLKELYLSKNRFFS-----LPASINLLSKLWIIELEECQRL   69 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~e--g~iP~~i-------~~L~~L~~L~Ls~N~~~~-----LP~si~~Ls~L~~L~Ls~c~~l   69 (341)
                      +..+++|+.|+|++|.+..  +.+|..+       ..+++|+.|+|++|.+..     +|..+..+++|+.|+|++|.+.
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            4456667777776653320  3344443       566677777777776664     5666666777777777777653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.10  E-value=3.6e-07  Score=87.41  Aligned_cols=108  Identities=12%  Similarity=0.143  Sum_probs=74.8

Q ss_pred             CCCcEEeccCCCCCCCCCC---ccccCCCCCcEEEccCCCCC------CCChhccCCCCccEEEcCCcccc----ccCCC
Q 039899            8 CSLTKLDISDCNLGEGAIP---SDIGNICSLKELYLSKNRFF------SLPASINLLSKLWIIELEECQRL----QSLPQ   74 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP---~~i~~L~~L~~L~Ls~N~~~------~LP~si~~Ls~L~~L~Ls~c~~l----~~lP~   74 (341)
                      ++|+.|+|++|.+..+.+|   ..+..+++|+.|+|++|.+.      .+|..+..+++|+.|+|++|.+.    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            7888999999988644455   46777888999999999888      34447888888999999988874    44442


Q ss_pred             ---CCccccccccccccccCcch--hhhHHH----HhhchhccCCCCcccc
Q 039899           75 ---LPSNIEQVQVNGCASLGTLS--HALKLC----KSIDVEVSKPIPHLSI  116 (341)
Q Consensus        75 ---lp~sL~~L~~~~c~sL~~l~--~~p~~l----~~~l~~l~l~~n~~~~  116 (341)
                         -.++|+.|++++|. +....  .++..+    ...++.+++++|.+..
T Consensus       239 ~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence               12467778877764 33221  234444    2337778888888764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.09  E-value=5.2e-07  Score=85.81  Aligned_cols=80  Identities=19%  Similarity=0.114  Sum_probs=53.7

Q ss_pred             CCCcEEeccCCCCCCCCCC----ccccCCC-CCcEEEccCCCCCCC-ChhccCC-----CCccEEEcCCccccccCC---
Q 039899            8 CSLTKLDISDCNLGEGAIP----SDIGNIC-SLKELYLSKNRFFSL-PASINLL-----SKLWIIELEECQRLQSLP---   73 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP----~~i~~L~-~L~~L~Ls~N~~~~L-P~si~~L-----s~L~~L~Ls~c~~l~~lP---   73 (341)
                      ++|+.|+|++|.+. +.-+    ..+..++ +|+.|+|++|.+... +..+..+     ++|+.|+|++|++.+..+   
T Consensus        22 ~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           22 HGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            44888888888876 3223    5567777 788888888888743 4556554     788888888887654332   


Q ss_pred             -----CCCcccccccccccc
Q 039899           74 -----QLPSNIEQVQVNGCA   88 (341)
Q Consensus        74 -----~lp~sL~~L~~~~c~   88 (341)
                           ..|++|+.|+++++.
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSC
T ss_pred             HHHHHhCCCCccEEECcCCc
Confidence                 223677777776653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.98  E-value=1.4e-06  Score=82.86  Aligned_cols=110  Identities=17%  Similarity=0.189  Sum_probs=72.6

Q ss_pred             CCCC-CCcEEeccCCCCCCCCCCccccCC-----CCCcEEEccCCCCCCCC-hh----ccCC-CCccEEEcCCccccccC
Q 039899            5 LGLC-SLTKLDISDCNLGEGAIPSDIGNI-----CSLKELYLSKNRFFSLP-AS----INLL-SKLWIIELEECQRLQSL   72 (341)
Q Consensus         5 ~~L~-~L~~LdLs~~~l~eg~iP~~i~~L-----~~L~~L~Ls~N~~~~LP-~s----i~~L-s~L~~L~Ls~c~~l~~l   72 (341)
                      .+++ +|+.|+|++|.+. +..+..+..+     ++|+.|+|++|.++..+ ..    +..+ ++|+.|+|++|++....
T Consensus        47 ~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A           47 ANTPASVTSLNLSGNSLG-FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             HTCCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             HhCCCceeEEECcCCCCC-HHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence            3556 7888889888886 5556566554     88888999888888444 33    4444 78888888888875432


Q ss_pred             CC--------CCccccccccccccccCc--chhhhHHHH---hhchhccCCCCcccc
Q 039899           73 PQ--------LPSNIEQVQVNGCASLGT--LSHALKLCK---SIDVEVSKPIPHLSI  116 (341)
Q Consensus        73 P~--------lp~sL~~L~~~~c~sL~~--l~~~p~~l~---~~l~~l~l~~n~~~~  116 (341)
                      +.        +|.+|+.|+++++. +..  ...++..+.   ..++.+++++|.++.
T Consensus       126 ~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          126 SSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence            21        15688888887762 221  112333333   257788888888764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.95  E-value=8.8e-06  Score=76.96  Aligned_cols=88  Identities=25%  Similarity=0.281  Sum_probs=64.6

Q ss_pred             CCCCC-CCcEEeccCCCCCCCCCCccccCCCCCcEEEccC-CCCCCCCh-hccCCCCccEEEcCCccccccCCC-CCccc
Q 039899            4 LLGLC-SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSK-NRFFSLPA-SINLLSKLWIIELEECQRLQSLPQ-LPSNI   79 (341)
Q Consensus         4 l~~L~-~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~-N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~-lp~sL   79 (341)
                      +..+. .++.|+|++|++.+  +|..+...++|+.|++++ |.++.||. .+..+++|+.|+|++|++. .+|. ...+|
T Consensus       149 f~~~~~~l~~L~L~~N~i~~--i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L  225 (350)
T 4ay9_X          149 FVGLSFESVILWLNKNGIQE--IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENL  225 (350)
T ss_dssp             STTSBSSCEEEECCSSCCCE--ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTC
T ss_pred             hhhcchhhhhhccccccccC--CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhccc
Confidence            34443 57788888888864  887777778888888874 67778886 4688888888888888764 5553 56677


Q ss_pred             cccccccccccCcch
Q 039899           80 EQVQVNGCASLGTLS   94 (341)
Q Consensus        80 ~~L~~~~c~sL~~l~   94 (341)
                      +.|.+.++..|+.++
T Consensus       226 ~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          226 KKLRARSTYNLKKLP  240 (350)
T ss_dssp             CEEECTTCTTCCCCC
T ss_pred             hHhhhccCCCcCcCC
Confidence            777777777666665

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.59  E-value=1.6e-05  Score=77.17  Aligned_cols=63  Identities=16%  Similarity=0.158  Sum_probs=32.8

Q ss_pred             CCCCCcEEeccCCCCCCCCCCccc-cCCC----CCcEEEccCCCCC-----CCChhccCCCCccEEEcCCcccc
Q 039899            6 GLCSLTKLDISDCNLGEGAIPSDI-GNIC----SLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQRL   69 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~~i-~~L~----~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~l   69 (341)
                      .+++|++|+|++|.+. +..+..+ ..++    +|+.|+|++|.+.     .+|..+..+++|+.|+|++|++.
T Consensus        54 ~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  126 (461)
T 1z7x_W           54 VNPALAELNLRSNELG-DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  126 (461)
T ss_dssp             TCTTCCEEECTTCCCH-HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             hCCCcCEEeCCCCcCC-hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence            3455666666665554 2112121 2233    4666666666655     34555666666666666666543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.27  E-value=3.4e-05  Score=74.82  Aligned_cols=80  Identities=23%  Similarity=0.307  Sum_probs=59.9

Q ss_pred             CCCCcEEeccCCCCCCCC----CCccccCCCCCcEEEccCCCCCCC-ChhccC-----CCCccEEEcCCccccc----cC
Q 039899            7 LCSLTKLDISDCNLGEGA----IPSDIGNICSLKELYLSKNRFFSL-PASINL-----LSKLWIIELEECQRLQ----SL   72 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~----iP~~i~~L~~L~~L~Ls~N~~~~L-P~si~~-----Ls~L~~L~Ls~c~~l~----~l   72 (341)
                      .++|+.|+|++|.+. +.    +|..+..+++|+.|+|++|.+... +..+..     .++|+.|+|++|++..    .+
T Consensus       312 ~~~L~~L~L~~n~l~-~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  390 (461)
T 1z7x_W          312 GCQLESLWVKSCSFT-AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL  390 (461)
T ss_dssp             TCCCCEEECTTSCCB-GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             CccceeeEcCCCCCc-hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHH
Confidence            368999999999987 43    566777889999999999988833 333332     6799999999998864    44


Q ss_pred             CCC---Cccccccccccc
Q 039899           73 PQL---PSNIEQVQVNGC   87 (341)
Q Consensus        73 P~l---p~sL~~L~~~~c   87 (341)
                      |..   .++|+.|+++++
T Consensus       391 ~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          391 AATLLANHSLRELDLSNN  408 (461)
T ss_dssp             HHHHHHCCCCCEEECCSS
T ss_pred             HHHHHhCCCccEEECCCC
Confidence            432   357788888776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.23  E-value=5.7e-05  Score=72.50  Aligned_cols=61  Identities=11%  Similarity=0.174  Sum_probs=32.9

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC-----hhc-cCCCCccEEEcCCccc
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP-----ASI-NLLSKLWIIELEECQR   68 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP-----~si-~~Ls~L~~L~Ls~c~~   68 (341)
                      ++|+.|+|++|.+.+..+..-...+++|+.|+|++|.+...+     ..+ ...++|+.|+|++|.+
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l  167 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL  167 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCC
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCC
Confidence            567777777777652111111223456677777777665221     112 2345666777776665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.13  E-value=0.00033  Score=60.34  Aligned_cols=83  Identities=12%  Similarity=0.244  Sum_probs=58.5

Q ss_pred             CCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCC-CC--CCChhccCC----CCccEEEcCCcccccc-----CCCC
Q 039899            8 CSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNR-FF--SLPASINLL----SKLWIIELEECQRLQS-----LPQL   75 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~-~~--~LP~si~~L----s~L~~L~Ls~c~~l~~-----lP~l   75 (341)
                      ..|+.|||++|.+++..+ ..+..+++|+.|+|++|. ++  .+ ..|..+    ++|+.|+|++|.....     |-.+
T Consensus        61 ~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             ceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            468999999999874333 456889999999999985 65  12 234443    3699999999974331     2223


Q ss_pred             CccccccccccccccCcc
Q 039899           76 PSNIEQVQVNGCASLGTL   93 (341)
Q Consensus        76 p~sL~~L~~~~c~sL~~l   93 (341)
                       ++|+.|++++|+.++..
T Consensus       139 -~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          139 -RNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             -TTCCEEEEESCTTCCCH
T ss_pred             -CCCCEEECCCCCCCCch
Confidence             67888888888877654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.91  E-value=0.00023  Score=71.13  Aligned_cols=82  Identities=17%  Similarity=0.167  Sum_probs=55.8

Q ss_pred             CCCCCcEEeccCCCCCCCCCCcccc-CCCCCcEEEccCC-CCCC--CChhccCCCCccEEEcCCccccc-------cCCC
Q 039899            6 GLCSLTKLDISDCNLGEGAIPSDIG-NICSLKELYLSKN-RFFS--LPASINLLSKLWIIELEECQRLQ-------SLPQ   74 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~~i~-~L~~L~~L~Ls~N-~~~~--LP~si~~Ls~L~~L~Ls~c~~l~-------~lP~   74 (341)
                      .+++|+.|+|++|.+. +..+..+. .+++|+.|+|++| .+..  ++..+.++++|+.|+|++|.+..       .++.
T Consensus       103 ~~~~L~~L~L~~~~~~-~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVT-DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HCTTCCEEEEESCBCC-HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             hCCCCCeEEeeCcEEc-HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            3567888888888876 55555554 5788888888888 5553  66556678888888888887433       1222


Q ss_pred             CCcccccccccccc
Q 039899           75 LPSNIEQVQVNGCA   88 (341)
Q Consensus        75 lp~sL~~L~~~~c~   88 (341)
                      ..++|+.|++.+|.
T Consensus       182 ~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          182 TYTSLVSLNISCLA  195 (594)
T ss_dssp             TCCCCCEEECTTCC
T ss_pred             cCCcCcEEEecccC
Confidence            23467777776664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.89  E-value=0.00019  Score=71.81  Aligned_cols=82  Identities=16%  Similarity=0.069  Sum_probs=60.4

Q ss_pred             CCCCCcEEeccCCC--CCCCCCCcccc-CCCCCcEEEccCCCCC--CCChhccCCCCccEEEcCCcccccc-CCCC---C
Q 039899            6 GLCSLTKLDISDCN--LGEGAIPSDIG-NICSLKELYLSKNRFF--SLPASINLLSKLWIIELEECQRLQS-LPQL---P   76 (341)
Q Consensus         6 ~L~~L~~LdLs~~~--l~eg~iP~~i~-~L~~L~~L~Ls~N~~~--~LP~si~~Ls~L~~L~Ls~c~~l~~-lP~l---p   76 (341)
                      ++++|+.|+|++|+  ++ +..+..++ .+++|+.|+|++|.++  .+|..+..+++|+.|+|++|.+... ++.+   .
T Consensus       434 ~~~~L~~L~L~~~~~~l~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l  512 (592)
T 3ogk_B          434 GCKKLRRFAFYLRQGGLT-DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL  512 (592)
T ss_dssp             HCTTCCEEEEECCGGGCC-HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred             hCCCCCEEEEecCCCCcc-HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence            47889999998765  55 33444443 4788999999999987  5676778889999999999985432 2322   3


Q ss_pred             cccccccccccc
Q 039899           77 SNIEQVQVNGCA   88 (341)
Q Consensus        77 ~sL~~L~~~~c~   88 (341)
                      ++|+.|++++|.
T Consensus       513 ~~L~~L~ls~n~  524 (592)
T 3ogk_B          513 PSLRYLWVQGYR  524 (592)
T ss_dssp             SSCCEEEEESCB
T ss_pred             CccCeeECcCCc
Confidence            578888888886

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.87  E-value=0.002  Score=52.32  Aligned_cols=57  Identities=23%  Similarity=0.276  Sum_probs=46.7

Q ss_pred             cEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCcccc
Q 039899           11 TKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRL   69 (341)
Q Consensus        11 ~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l   69 (341)
                      ..++.++++++...+|..+.  ++|+.|+|++|.|+.||. .+..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            57889999986124897543  579999999999999987 4688999999999999763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.81  E-value=0.00013  Score=70.01  Aligned_cols=107  Identities=16%  Similarity=0.138  Sum_probs=73.6

Q ss_pred             CCCCcEEeccCCCCCCCCCCccc-----cCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCcccccc----C
Q 039899            7 LCSLTKLDISDCNLGEGAIPSDI-----GNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQRLQS----L   72 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~~i-----~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~l~~----l   72 (341)
                      +++|+.|+|++|.+.+ .-...+     ...++|+.|+|++|.|+     .++..+..+++|+.|+|++|.+...    +
T Consensus       125 L~~L~~L~Ls~n~l~~-~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L  203 (372)
T 3un9_A          125 FLRARKLGLQLNSLGP-EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL  203 (372)
T ss_dssp             HHTEEEEECCSSCCCH-HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH
T ss_pred             HHhccHhhcCCCCCCH-HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH
Confidence            5679999999999962 222222     34678999999999987     3666778899999999999987531    1


Q ss_pred             C---CCCccccccccccccccCcch--hhhHHHH--hhchhccCCCCccc
Q 039899           73 P---QLPSNIEQVQVNGCASLGTLS--HALKLCK--SIDVEVSKPIPHLS  115 (341)
Q Consensus        73 P---~lp~sL~~L~~~~c~sL~~l~--~~p~~l~--~~l~~l~l~~n~~~  115 (341)
                      +   .-+++|+.|++++|. +....  .+...+.  ..++.+++++|.++
T Consensus       204 ~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          204 AAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            1   123578889988763 33221  2233332  23788999999876

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.77  E-value=0.00034  Score=69.91  Aligned_cols=63  Identities=13%  Similarity=0.107  Sum_probs=43.3

Q ss_pred             CCCCCcEEeccCCCCCCCC----CCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCcccc
Q 039899            6 GLCSLTKLDISDCNLGEGA----IPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQRL   69 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~----iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~l   69 (341)
                      ++++|++|+|++|.+. +.    ++..+..+++|+.|+|++|.+.     .++..+.++++|+.|++++|...
T Consensus       162 ~~~~L~~L~L~~~~~~-~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  233 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFS-EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL  233 (592)
T ss_dssp             HCTTCSEEECTTCEEE-CCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred             hCCCCCEEECcccccc-CcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence            4678888888888875 33    3334556777888888877775     34445566777788887777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.33  E-value=0.0034  Score=58.31  Aligned_cols=56  Identities=25%  Similarity=0.308  Sum_probs=43.2

Q ss_pred             CCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCh-hccCCCCcc-EEEcCC
Q 039899            7 LCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPA-SINLLSKLW-IIELEE   65 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~-~L~Ls~   65 (341)
                      +++|+.|+|++|++..  ||. .+.++++|+.|+|.+| ++.||. .+.++++|+ .|.+.+
T Consensus       225 ~~~L~~l~L~~n~i~~--I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          225 MPNLVSLDISKTNATT--IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             CTTCCEEECTTBCCCE--ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred             cCCCeEEECCCCCcce--ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence            5778888888888753  765 4777888888888877 777765 678888888 888876

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.30  E-value=0.0046  Score=57.45  Aligned_cols=79  Identities=13%  Similarity=0.056  Sum_probs=61.5

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCc-cccCCCCCc-EEEccCCCCCCCC-hhccCCCCccEEEcCCccccccCCCCCccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPS-DIGNICSLK-ELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQSLPQLPSNI   79 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~-~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL   79 (341)
                      +|.++.+|+.|+|++| +.  .|+. .|.++++|+ .|+|.. +++.|+ ..+.++++|+.|++++|++. .   ++...
T Consensus       245 aF~~~~~L~~l~l~~n-i~--~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~---I~~~a  316 (329)
T 3sb4_A          245 TFAQKKYLLKIKLPHN-LK--TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-T---LGDEL  316 (329)
T ss_dssp             TTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-E---ECTTT
T ss_pred             hhhCCCCCCEEECCcc-cc--eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-c---cchhh
Confidence            4788999999999997 64  3764 588999999 999998 788776 58999999999999888764 2   33322


Q ss_pred             cccccccccccCcc
Q 039899           80 EQVQVNGCASLGTL   93 (341)
Q Consensus        80 ~~L~~~~c~sL~~l   93 (341)
                      -    .+|++|+.+
T Consensus       317 F----~~~~~L~~l  326 (329)
T 3sb4_A          317 F----GNGVPSKLI  326 (329)
T ss_dssp             T----CTTCCCCEE
T ss_pred             h----cCCcchhhh
Confidence            1    567777654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.07  E-value=0.00056  Score=68.27  Aligned_cols=104  Identities=12%  Similarity=0.087  Sum_probs=63.9

Q ss_pred             CCCCCcEEecc--C----CCCCCCCCCc------cccCCCCCcEEEccCCCCC-CCChhccC-CCCccEEEcCCcccccc
Q 039899            6 GLCSLTKLDIS--D----CNLGEGAIPS------DIGNICSLKELYLSKNRFF-SLPASINL-LSKLWIIELEECQRLQS   71 (341)
Q Consensus         6 ~L~~L~~LdLs--~----~~l~eg~iP~------~i~~L~~L~~L~Ls~N~~~-~LP~si~~-Ls~L~~L~Ls~c~~l~~   71 (341)
                      .+++|+.|+|+  +    ++++  ..|.      -+..+++|+.|+|++ .++ ..+..+.. +++|+.|+|++|.+...
T Consensus       395 ~~~~L~~L~L~~~~~~~~~~l~--~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~  471 (594)
T 2p1m_B          395 NRPNMTRFRLCIIEPKAPDYLT--LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL  471 (594)
T ss_dssp             HCTTCCEEEEEESSTTCCCTTT--CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHH
T ss_pred             hCCCcceeEeecccCCCccccc--CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHH
Confidence            47889999998  3    4443  2332      256778899999977 555 33345554 78899999998886432


Q ss_pred             CC-CC---CccccccccccccccCcchhhhHHH--HhhchhccCCCCcc
Q 039899           72 LP-QL---PSNIEQVQVNGCASLGTLSHALKLC--KSIDVEVSKPIPHL  114 (341)
Q Consensus        72 lP-~l---p~sL~~L~~~~c~sL~~l~~~p~~l--~~~l~~l~l~~n~~  114 (341)
                      .+ .+   .++|+.|++++|.- .. ..+....  ...++.+++++|.+
T Consensus       472 ~~~~l~~~~~~L~~L~L~~n~~-~~-~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          472 GMHHVLSGCDSLRKLEIRDCPF-GD-KALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCSC-CH-HHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHHhcCCCcCEEECcCCCC-cH-HHHHHHHHhCCCCCEEeeeCCCC
Confidence            11 11   35788888887753 11 1111111  13467777777765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.00  E-value=0.0048  Score=56.54  Aligned_cols=41  Identities=29%  Similarity=0.350  Sum_probs=35.4

Q ss_pred             cCCCCCcEEEccCCCCCCCC---hhccCCCCccEEEcCCccccc
Q 039899           30 GNICSLKELYLSKNRFFSLP---ASINLLSKLWIIELEECQRLQ   70 (341)
Q Consensus        30 ~~L~~L~~L~Ls~N~~~~LP---~si~~Ls~L~~L~Ls~c~~l~   70 (341)
                      .++++|+.|+|++|.|+.++   ..+..+++|+.|+|++|++.+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  210 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence            46889999999999999654   667899999999999999853

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.82  E-value=0.0028  Score=54.25  Aligned_cols=111  Identities=12%  Similarity=0.125  Sum_probs=70.1

Q ss_pred             CCCCCCCcEEeccCC-CCCCC---CCCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCcccccc---
Q 039899            4 LLGLCSLTKLDISDC-NLGEG---AIPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQRLQS---   71 (341)
Q Consensus         4 l~~L~~L~~LdLs~~-~l~eg---~iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~l~~---   71 (341)
                      +...++|+.|+|++| .+.+.   .+...+...++|+.|+|++|.|.     .+...+...+.|+.|+|++|.+...   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            345678999999999 88521   13445677789999999999987     3556677778999999999987531   


Q ss_pred             -CCC-C--Ccccccccc--ccccccCcch--hhhHHHH--hhchhccCCCCccc
Q 039899           72 -LPQ-L--PSNIEQVQV--NGCASLGTLS--HALKLCK--SIDVEVSKPIPHLS  115 (341)
Q Consensus        72 -lP~-l--p~sL~~L~~--~~c~sL~~l~--~~p~~l~--~~l~~l~l~~n~~~  115 (341)
                       |.. +  -.+|+.|++  .++ .+..-.  .+...+.  ..++.++++.|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             111 1  235677776  322 222111  1222222  23667777777664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.72  E-value=0.0031  Score=54.03  Aligned_cols=83  Identities=11%  Similarity=0.075  Sum_probs=59.3

Q ss_pred             CCCCCCcEEeccCCCCCCC---CCCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEc--CCcccccc---
Q 039899            5 LGLCSLTKLDISDCNLGEG---AIPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIEL--EECQRLQS---   71 (341)
Q Consensus         5 ~~L~~L~~LdLs~~~l~eg---~iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~L--s~c~~l~~---   71 (341)
                      ...++|++|+|++|.+.+.   .+...+...++|+.|+|++|.|.     .+...+...+.|+.|+|  ++|.+...   
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            4467899999999999621   13445666788999999999998     36677888899999999  77877431   


Q ss_pred             -CCCC---Cccccccccccc
Q 039899           72 -LPQL---PSNIEQVQVNGC   87 (341)
Q Consensus        72 -lP~l---p~sL~~L~~~~c   87 (341)
                       +.+.   -++|+.|+++++
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCCCcCEEeccCC
Confidence             1110   145666666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.70  E-value=0.0014  Score=56.34  Aligned_cols=66  Identities=12%  Similarity=0.266  Sum_probs=49.3

Q ss_pred             CCCCCCCCcEEeccCCC-CCCCCCCccccCC----CCCcEEEccCCC-CC--CCChhccCCCCccEEEcCCccccc
Q 039899            3 SLLGLCSLTKLDISDCN-LGEGAIPSDIGNI----CSLKELYLSKNR-FF--SLPASINLLSKLWIIELEECQRLQ   70 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~-l~eg~iP~~i~~L----~~L~~L~Ls~N~-~~--~LP~si~~Ls~L~~L~Ls~c~~l~   70 (341)
                      .+.++++|+.|+|++|. +++ .--..++.+    ++|+.|+|++|. ++  .+ ..+.++++|+.|+|++|...+
T Consensus        80 ~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A           80 HMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             GGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTCC
T ss_pred             HhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCCC
Confidence            46789999999999996 552 112235554    369999999984 77  34 357789999999999997543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.26  E-value=0.0022  Score=61.30  Aligned_cols=81  Identities=14%  Similarity=0.068  Sum_probs=52.7

Q ss_pred             CCCCCcEEeccC--CCCCCCC-----CCccc--cCCCCCcEEEccCCCCC-CCChhc---cCCCCccEEEcCCcccccc-
Q 039899            6 GLCSLTKLDISD--CNLGEGA-----IPSDI--GNICSLKELYLSKNRFF-SLPASI---NLLSKLWIIELEECQRLQS-   71 (341)
Q Consensus         6 ~L~~L~~LdLs~--~~l~eg~-----iP~~i--~~L~~L~~L~Ls~N~~~-~LP~si---~~Ls~L~~L~Ls~c~~l~~-   71 (341)
                      .+++|+.|+|+.  ++.. |.     +...+  +.+++|+.|+|.+|.+. ..+..+   ..+++|+.|+|+.|.+... 
T Consensus       217 ~lp~L~~L~L~~~~~~~~-~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G  295 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYG-FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG  295 (362)
T ss_dssp             BCTTCCEEEEECBCGGGT-CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred             cCCCCcEEEEeccccccc-cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence            689999999864  2211 11     11222  35789999999999887 233333   3578999999999987542 


Q ss_pred             ---CCCC---Cccccccccccc
Q 039899           72 ---LPQL---PSNIEQVQVNGC   87 (341)
Q Consensus        72 ---lP~l---p~sL~~L~~~~c   87 (341)
                         ++.-   .++|+.|++++|
T Consensus       296 ~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          296 ARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             HHHHHTTHHHHTTCSEEECCSB
T ss_pred             HHHHHhhcccCCcceEEECCCC
Confidence               2221   246777777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=94.65  E-value=0.025  Score=53.87  Aligned_cols=14  Identities=7%  Similarity=-0.239  Sum_probs=9.5

Q ss_pred             hchhccCCCCcccc
Q 039899          103 IDVEVSKPIPHLSI  116 (341)
Q Consensus       103 ~l~~l~l~~n~~~~  116 (341)
                      .++.|+++.|.+..
T Consensus       280 ~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          280 QLETMDISAGVLTD  293 (362)
T ss_dssp             GCSEEECCSSCCBH
T ss_pred             CCCEEECCCCCCCh
Confidence            46777787777653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.70  E-value=0.099  Score=50.24  Aligned_cols=55  Identities=20%  Similarity=0.193  Sum_probs=36.2

Q ss_pred             CCCcEEeccCCCCCCCCCC-ccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCC
Q 039899            8 CSLTKLDISDCNLGEGAIP-SDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEE   65 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP-~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~   65 (341)
                      ++|+.+.|.. ++.  .|+ ..+.++++|+.++|++|+++.||...-..++|+.+.|..
T Consensus       157 ~~L~~i~lp~-~l~--~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~  212 (401)
T 4fdw_A          157 STVQEIVFPS-TLE--QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV  212 (401)
T ss_dssp             CCCCEEECCT-TCC--EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred             CCceEEEeCC-Ccc--EehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence            3577777765 443  244 456777778888887777777776544467777777753

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.46  E-value=0.073  Score=42.90  Aligned_cols=36  Identities=22%  Similarity=0.354  Sum_probs=31.6

Q ss_pred             CCcEEeccCCCCCCCCCCcc-ccCCCCCcEEEccCCCCC
Q 039899            9 SLTKLDISDCNLGEGAIPSD-IGNICSLKELYLSKNRFF   46 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~-i~~L~~L~~L~Ls~N~~~   46 (341)
                      +|+.|+|++|+|+.  +|.. +..+++|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTA--LPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSS--CCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCc--cChhhhhhccccCEEEecCCCee
Confidence            69999999999974  7754 688999999999999876

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=89.30  E-value=0.41  Score=44.77  Aligned_cols=59  Identities=15%  Similarity=0.152  Sum_probs=44.0

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCC
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEE   65 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~   65 (341)
                      +.+..+|+.+.+..+ +.  .++. .+..+++|+.+.+.++.++.|+. .+.++.+|+.+.|..
T Consensus       259 F~~~~~l~~i~l~~~-i~--~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          259 LQNCTALKTLNFYAK-VK--TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             TTTCTTCCEEEECCC-CS--EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             cceeehhcccccccc-ce--eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence            456677888888654 32  2554 46778899999999888888875 688888999888753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=88.78  E-value=0.7  Score=44.24  Aligned_cols=60  Identities=13%  Similarity=0.146  Sum_probs=45.3

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCcc-ccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCcccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSD-IGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRL   69 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~-i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l   69 (341)
                      |.+ ++|+.+.|..+ +.  .|+.. +.+ .+|+.+.|.. +++.|+ ..+.++.+|+.++|.+|++.
T Consensus       132 F~~-~~L~~i~l~~~-i~--~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~  193 (401)
T 4fdw_A          132 FRN-SQIAKVVLNEG-LK--SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT  193 (401)
T ss_dssp             TTT-CCCSEEECCTT-CC--EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS
T ss_pred             ccc-CCccEEEeCCC-cc--EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce
Confidence            445 47999998776 53  36543 444 5799999986 788777 47899999999999988663

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=88.10  E-value=0.79  Score=43.24  Aligned_cols=58  Identities=21%  Similarity=0.249  Sum_probs=36.8

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCC-ccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCC
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIP-SDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEE   65 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP-~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~   65 (341)
                      |.+..+|+.+.+......   ++ ..+.+.++|+.+.+. +.++.|+. .+.++.+|+.+.|..
T Consensus       261 F~~c~~L~~i~lp~~~~~---I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~  320 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVS---IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE  320 (394)
T ss_dssp             TTTCSSCCEEECCTTCCE---ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred             eeecccccEEecccccce---ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence            455666777776554432   33 345667778888875 45666664 567777888777653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=87.41  E-value=0.84  Score=42.56  Aligned_cols=61  Identities=18%  Similarity=0.214  Sum_probs=45.0

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCC-ccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIP-SDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQR   68 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP-~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~   68 (341)
                      +.+...|+.+.+..+ +.  .|+ ..+.+..+|+.+.+.. ++..++. .+.++++|+.+.+.++..
T Consensus       236 f~~~~~L~~i~lp~~-v~--~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i  298 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VT--SIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAI  298 (379)
T ss_dssp             TTTCSSCCEEEECTT-CC--EECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTC
T ss_pred             ccCCccceEEEcCCC-cc--EeCccccceeehhccccccc-cceecccccccccccccccccccccc
Confidence            556778888888765 43  254 3467788999999965 4777765 678899999999987654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=86.18  E-value=0.34  Score=42.09  Aligned_cols=82  Identities=12%  Similarity=0.169  Sum_probs=55.5

Q ss_pred             CCCCCcEEeccCC-CCCCC---CCCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCcccccc----C
Q 039899            6 GLCSLTKLDISDC-NLGEG---AIPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQRLQS----L   72 (341)
Q Consensus         6 ~L~~L~~LdLs~~-~l~eg---~iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~l~~----l   72 (341)
                      +-+.|+.|+|+++ .+.+.   .+-..+..=+.|+.|+|++|.|.     .|-..+..=+.|+.|+|++|.+...    |
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3467999999986 66310   12344666678999999999988     4555666678899999999987431    0


Q ss_pred             ---CCCCccccccccccc
Q 039899           73 ---PQLPSNIEQVQVNGC   87 (341)
Q Consensus        73 ---P~lp~sL~~L~~~~c   87 (341)
                         -.....|+.|+++++
T Consensus       119 a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCceeEEECCCC
Confidence               012345777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=86.13  E-value=0.24  Score=43.07  Aligned_cols=61  Identities=13%  Similarity=0.127  Sum_probs=45.6

Q ss_pred             CCCCcEEeccCCCCCC---CCCCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCcc
Q 039899            7 LCSLTKLDISDCNLGE---GAIPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQ   67 (341)
Q Consensus         7 L~~L~~LdLs~~~l~e---g~iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~   67 (341)
                      =+.|+.|+|++|.+.+   ..|-..+..=+.|+.|+|++|.|.     .|-..+..=+.|+.|+|++|.
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence            3679999999999962   123344555678999999999998     344456666779999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	341
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 7   LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEEC 66
             SL +L++S+  L E  +P+       L+ L  S N    +P     L +L +    E 
Sbjct: 283 PPSLEELNVSNNKLIE--LPALPPR---LERLIASFNHLAEVPELPQNLKQLHV----EY 333

Query: 67  QRLQSLPQLPSNIEQVQVN 85
             L+  P +P ++E +++N
Sbjct: 334 NPLREFPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 18  CNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPS 77
            N     I S      SL+EL +S N+   LPA    L +L          L  +P+LP 
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIA----SFNHLAEVPELPQ 324

Query: 78  NIEQVQVNGC 87
           N++Q+ V   
Sbjct: 325 NLKQLHVEYN 334

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 6   GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWI 60
               L +L  S  +L E  +P    N   LK+L++  N     P     +  L +
Sbjct: 302 LPPRLERLIASFNHLAE--VPELPQN---LKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 9   SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR 68
              +L++++  L    +P    +   L+ L  S N    LP     L  L +        
Sbjct: 39  QAHELELNNLGLSS--LPELPPH---LESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93

Query: 69  LQSLPQLP 76
               P L 
Sbjct: 94  SDLPPLLE 101

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 1   LPSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINL--LSKL 58
           +  +  L  L +L  ++  + +    S + N+ ++  L    N+   L    NL  +++L
Sbjct: 322 ISPVSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 378

Query: 59  WI 60
            +
Sbjct: 379 GL 380

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 14  DISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLP 73
           D+ +  +  G +P  +  +  L  L +S N           L +  +      + L   P
Sbjct: 250 DLRNNRI-YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

Query: 74  QLPS 77
            LP+
Sbjct: 309 -LPA 311

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	341
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.08
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.98
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.98
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.89
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.83
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.58
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.57
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.55
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.45
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.43
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.42
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.38
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.36
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.35
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.29
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.24
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.23
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.16
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.15
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.09
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.08
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.88
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.68
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.56
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.45
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.25
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.82
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	94.16
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	93.54
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.05
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	92.11
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	89.67
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	81.84

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.08  E-value=2.9e-11  Score=110.63  Aligned_cols=68  Identities=25%  Similarity=0.344  Sum_probs=40.9

Q ss_pred             CCCCCCCCcEEeccC-CCCCCCCCCccccCCCCCcEEEccCCCCCC-CChhccCCCCccEEEcCCcccccc
Q 039899            3 SLLGLCSLTKLDISD-CNLGEGAIPSDIGNICSLKELYLSKNRFFS-LPASINLLSKLWIIELEECQRLQS   71 (341)
Q Consensus         3 sl~~L~~L~~LdLs~-~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~-LP~si~~Ls~L~~L~Ls~c~~l~~   71 (341)
                      ++++|++|++|+|++ |++. |.+|.+|++|++|++|+|++|+|.. .|..+..+.+|+.+++++|+..+.
T Consensus        71 ~l~~L~~L~~L~Ls~~N~l~-g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~  140 (313)
T d1ogqa_          71 SLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT  140 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEE-SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred             HHhcCccccccccccccccc-cccccccccccccchhhhccccccccccccccchhhhccccccccccccc
Confidence            466777777777775 5666 6777777777777777777776552 223344444444444444444333

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=5.6e-10  Score=89.18  Aligned_cols=63  Identities=24%  Similarity=0.270  Sum_probs=32.6

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR   68 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~   68 (341)
                      .+..+++|++|+|++|.+.+  +|+.++.+++|+.|++++|.|+.+| .+..+++|+.|++++|++
T Consensus        15 ~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3          15 HLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             CGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred             ccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccccccC-ccccccccCeEECCCCcc
Confidence            34445555555555555532  5555555555555555555555554 255555555555555544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.98  E-value=1.3e-10  Score=106.15  Aligned_cols=133  Identities=23%  Similarity=0.311  Sum_probs=96.1

Q ss_pred             CCcEEeccCCCCCCC--CCCccccCCCCCcEEEccC-CCCC-CCChhccCCCCccEEEcCCccccccCCCCC---ccccc
Q 039899            9 SLTKLDISDCNLGEG--AIPSDIGNICSLKELYLSK-NRFF-SLPASINLLSKLWIIELEECQRLQSLPQLP---SNIEQ   81 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg--~iP~~i~~L~~L~~L~Ls~-N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp---~sL~~   81 (341)
                      .++.|+|+++++. |  .+|++++.|++|++|+|++ |++. .||++|++|++|++|+|++|++.+..|...   ..|+.
T Consensus        51 ~v~~L~L~~~~l~-g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLP-KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCS-SCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCC-CCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            5899999999998 6  4899999999999999997 7888 899999999999999999999988666543   34566


Q ss_pred             cccccccccCcchhhhHHHHh--hchhccCCCCccccccCCC--Cccccch-hccCCCeEEEEcCCCCC
Q 039899           82 VQVNGCASLGTLSHALKLCKS--IDVEVSKPIPHLSIVVPGS--EISKCFR-YQKEDSAMAVTMPLFLR  145 (341)
Q Consensus        82 L~~~~c~sL~~l~~~p~~l~~--~l~~l~l~~n~~~~~lPg~--~iP~wf~-~~~~g~si~~~Lp~~~~  145 (341)
                      +++..+.....+   |..+.+  .++.+++++|.+.+.+|..  ..+.... .....+.++...|..+.
T Consensus       130 l~l~~N~~~~~~---p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~  195 (313)
T d1ogqa_         130 LDFSYNALSGTL---PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA  195 (313)
T ss_dssp             EECCSSEEESCC---CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred             cccccccccccC---chhhccCcccceeecccccccccccccccccccccccccccccccccccccccc
Confidence            666555444333   333332  3677889999998877753  2222211 22355667766665443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=1e-09  Score=87.60  Aligned_cols=100  Identities=14%  Similarity=0.133  Sum_probs=74.7

Q ss_pred             cEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Ccccccccccccc
Q 039899           11 TKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNIEQVQVNGCA   88 (341)
Q Consensus        11 ~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL~~L~~~~c~   88 (341)
                      |+|+|++|++++  +| .++.+++|++|+|++|.++.+|+.++.+++|+.|++++|++. .+|.+  .++|+.|++.+. 
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~-~l~~~~~l~~L~~L~l~~N-   75 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNN-   75 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCSSCCEEECCSS-
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccc-ccCccccccccCeEECCCC-
Confidence            689999999974  66 599999999999999999999999999999999999999885 45543  246677776553 


Q ss_pred             ccCcchhhhHHHH--hhchhccCCCCcccc
Q 039899           89 SLGTLSHALKLCK--SIDVEVSKPIPHLSI  116 (341)
Q Consensus        89 sL~~l~~~p~~l~--~~l~~l~l~~n~~~~  116 (341)
                      .++.++.+ ..+.  ..++.+++++|.+..
T Consensus        76 ~i~~~~~~-~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAI-QPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTT-GGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCc-hhhcCCCCCCEEECCCCcCCc
Confidence            23322221 1121  236777888888763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.6e-09  Score=96.84  Aligned_cols=133  Identities=16%  Similarity=0.068  Sum_probs=83.9

Q ss_pred             CCCcEEeccCCCCCCCCCC-ccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC---Cccccccc
Q 039899            8 CSLTKLDISDCNLGEGAIP-SDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL---PSNIEQVQ   83 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP-~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~   83 (341)
                      ++|++|+|++|++..  +| ..+..+++|+.|+|++|.|+.+|. ++.+++|+.|+|++|++.. +|..   .++|+.|+
T Consensus        31 ~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLLYT--FSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCCSE--EEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEE
T ss_pred             cCCCEEECcCCcCCC--cCHHHhhcccccccccccccccccccc-ccccccccccccccccccc-ccccccccccccccc
Confidence            468999999999863  65 568889999999999999998874 6788899999999988754 3332   24566666


Q ss_pred             cccccccCcch--------------------hhhHHH---HhhchhccCCCCccccccCCC--CccccchhccCCCeEEE
Q 039899           84 VNGCASLGTLS--------------------HALKLC---KSIDVEVSKPIPHLSIVVPGS--EISKCFRYQKEDSAMAV  138 (341)
Q Consensus        84 ~~~c~sL~~l~--------------------~~p~~l---~~~l~~l~l~~n~~~~~lPg~--~iP~wf~~~~~g~si~~  138 (341)
                      +.++..-+...                    .++...   ...++.+++++|.++...|+.  .++........+|.++ 
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-  185 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-
Confidence            65432111111                    112111   123556677777777654442  3444444445666666 


Q ss_pred             EcCCCCC
Q 039899          139 TMPLFLR  145 (341)
Q Consensus       139 ~Lp~~~~  145 (341)
                      .+|+..+
T Consensus       186 ~lp~~~~  192 (266)
T d1p9ag_         186 TIPKGFF  192 (266)
T ss_dssp             CCCTTTT
T ss_pred             ccChhHC
Confidence            5666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.1e-09  Score=89.70  Aligned_cols=109  Identities=12%  Similarity=0.049  Sum_probs=83.0

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL---PSN   78 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s   78 (341)
                      |++.+...|++|+|++|++..  +|..+..+++|+.|+|++|.+++++ .+..+++|+.|++++|++.+-.+.+   .++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             HhccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccc
Confidence            556778889999999999964  8877788999999999999999986 6899999999999999986433322   457


Q ss_pred             ccccccccccccCcchhhhHHHH--hhchhccCCCCccc
Q 039899           79 IEQVQVNGCASLGTLSHALKLCK--SIDVEVSKPIPHLS  115 (341)
Q Consensus        79 L~~L~~~~c~sL~~l~~~p~~l~--~~l~~l~l~~n~~~  115 (341)
                      ++.|++.++ .++.++.+. .+.  ..++.+++++|.+.
T Consensus        89 L~~L~L~~N-~i~~~~~l~-~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          89 LTELILTNN-SLVELGDLD-PLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCEEECCSC-CCCCGGGGG-GGGGCTTCCEEECCSSGGG
T ss_pred             cccceeccc-ccccccccc-ccccccccchhhcCCCccc
Confidence            888888765 334333211 121  23778888888875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.76  E-value=3.3e-09  Score=90.32  Aligned_cols=106  Identities=12%  Similarity=0.138  Sum_probs=70.6

Q ss_pred             CCCcEEeccCCCCCCCCC-CccccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCccccccCCCC---Ccccccc
Q 039899            8 CSLTKLDISDCNLGEGAI-PSDIGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQSLPQL---PSNIEQV   82 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~i-P~~i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L   82 (341)
                      +++++|+|++|+|+ +.+ +..++.+++|+.|+|++|.+..+| ..+..+++|+.|+|++|++..-.|..   .++|+.|
T Consensus        29 ~~l~~L~Ls~N~i~-~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCc-ccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccc
Confidence            47888999999886 444 445688889999999988888554 57788888999999988876443433   2455666


Q ss_pred             ccccccccCcch-hhhHHHHhhchhccCCCCcccc
Q 039899           83 QVNGCASLGTLS-HALKLCKSIDVEVSKPIPHLSI  116 (341)
Q Consensus        83 ~~~~c~sL~~l~-~~p~~l~~~l~~l~l~~n~~~~  116 (341)
                      ++.+. .|+.++ ..+..+ ..++.+++++|.+..
T Consensus       108 ~L~~N-~l~~i~~~~f~~l-~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         108 NLYDN-QISCVMPGSFEHL-NSLTSLNLASNPFNC  140 (192)
T ss_dssp             ECCSS-CCCEECTTSSTTC-TTCCEEECTTCCBCC
T ss_pred             ccCCc-cccccCHHHhcCC-ccccccccccccccc
Confidence            66554 344432 112111 236677787777653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.58  E-value=5.4e-08  Score=83.02  Aligned_cols=58  Identities=21%  Similarity=0.283  Sum_probs=34.7

Q ss_pred             CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899            7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR   68 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~   68 (341)
                      +.+|+.|++++|++.+  ++ .+..+++|++|+|++|.++.+|. ++++++|+.|++++|..
T Consensus        39 l~~l~~L~l~~~~i~~--l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             hcCCCEEECCCCCCCC--cc-ccccCCCcCcCccccccccCccc-ccCCccccccccccccc
Confidence            4556666666666642  43 35566666666666666665553 66666666666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.57  E-value=8.9e-08  Score=81.16  Aligned_cols=106  Identities=25%  Similarity=0.239  Sum_probs=79.1

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC-CC-hhccCCCCccEEEcCCccccccCCCC---Cccccccc
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFS-LP-ASINLLSKLWIIELEECQRLQSLPQL---PSNIEQVQ   83 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~-LP-~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~sL~~L~   83 (341)
                      +.+.++.++++++.  ||..+.  +++++|+|++|.|+. ++ ..+..+++|+.|+|++|++.+..+..   .++|+.|+
T Consensus         9 ~~~~v~Cs~~~L~~--iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_           9 EGTTVDCTGRGLKE--IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             ETTEEECTTSCCSS--CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEEeCCCcCc--cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceee
Confidence            46789999999975  998874  789999999999984 54 46789999999999999998766553   45777777


Q ss_pred             cccccccCcch-hhhHHHHhhchhccCCCCccccccCC
Q 039899           84 VNGCASLGTLS-HALKLCKSIDVEVSKPIPHLSIVVPG  120 (341)
Q Consensus        84 ~~~c~sL~~l~-~~p~~l~~~l~~l~l~~n~~~~~lPg  120 (341)
                      +++. .++.++ ..+..+ ..++.+++++|.++++.|+
T Consensus        85 Ls~N-~l~~l~~~~F~~l-~~L~~L~L~~N~l~~i~~~  120 (192)
T d1w8aa_          85 LGEN-KIKEISNKMFLGL-HQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             CCSC-CCCEECSSSSTTC-TTCCEEECCSSCCCEECTT
T ss_pred             eccc-cccccCHHHHhCC-CcccccccCCccccccCHH
Confidence            7665 344443 122222 2378889999999875554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.2e-07  Score=84.33  Aligned_cols=65  Identities=25%  Similarity=0.304  Sum_probs=52.9

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQ   70 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~   70 (341)
                      +|.++++|++|+|++|++++  +| .++.+++|+.|+|++|.++.+|..+..+++|+.|++++|+..+
T Consensus        50 ~f~~l~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~  114 (266)
T d1p9ag_          50 TLMPYTRLTQLNLDRAELTK--LQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS  114 (266)
T ss_dssp             GGTTCTTCCEEECTTSCCCE--EE-CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC
T ss_pred             Hhhccccccccccccccccc--cc-cccccccccccccccccccccccccccccccccccccccccce
Confidence            46788889999999998863  66 3578888999999999888888888888888888888887654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.45  E-value=1.4e-07  Score=81.09  Aligned_cols=76  Identities=16%  Similarity=0.289  Sum_probs=40.3

Q ss_pred             CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Ccccccccc
Q 039899            7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNIEQVQV   84 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL~~L~~   84 (341)
                      |.+|+.|++++|.+..  ++ .+..+++|+.|+|++|.|+.+| .++.+++|+.|++++|++. .+|.+  .++|+.|++
T Consensus        45 L~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC-CGGGGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCCC--ch-hHhhCCCCCEEeCCCccccCcc-ccccCcccccccccccccc-cccccccccccccccc
Confidence            4456666666666542  33 3555666666666666666555 3555666666666666543 23322  134455554


Q ss_pred             ccc
Q 039899           85 NGC   87 (341)
Q Consensus        85 ~~c   87 (341)
                      .++
T Consensus       120 ~~~  122 (210)
T d1h6ta2         120 EHN  122 (210)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=7.5e-08  Score=79.96  Aligned_cols=79  Identities=18%  Similarity=0.199  Sum_probs=63.2

Q ss_pred             CCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChh-ccCCCCccEEEcCCccccccCCCC-----Ccc
Q 039899            5 LGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPAS-INLLSKLWIIELEECQRLQSLPQL-----PSN   78 (341)
Q Consensus         5 ~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~s-i~~Ls~L~~L~Ls~c~~l~~lP~l-----p~s   78 (341)
                      ..+++|+.|+|++|.+.+  ++ .++.+++|+.|+|++|.++.+|.. +..+++|+.|++++|++. .++.+     .++
T Consensus        38 ~~l~~L~~L~Ls~N~i~~--l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~  113 (162)
T d1a9na_          38 ATLDQFDAIDFSDNEIRK--LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKS  113 (162)
T ss_dssp             GGTTCCSEEECCSSCCCE--EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTT
T ss_pred             cccccCCEEECCCCCCCc--cC-CcccCcchhhhhcccccccCCCccccccccccccceecccccc-ccccccccccccc
Confidence            457899999999999974  75 589999999999999999998875 467999999999999874 33332     245


Q ss_pred             ccccccccc
Q 039899           79 IEQVQVNGC   87 (341)
Q Consensus        79 L~~L~~~~c   87 (341)
                      |+.|++.++
T Consensus       114 L~~L~l~~N  122 (162)
T d1a9na_         114 LTYLCILRN  122 (162)
T ss_dssp             CCEEECCSS
T ss_pred             cchhhcCCC
Confidence            666666665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.9e-07  Score=83.54  Aligned_cols=112  Identities=19%  Similarity=0.215  Sum_probs=76.1

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL---PSN   78 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s   78 (341)
                      ++.++++|+.|++++|.+. +..+..++.+.+|+.+++++|.++.+|. .+..+++|+.|++++|++.+-.|..   .++
T Consensus       100 ~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~  178 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS  178 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccc
Confidence            4677888999999999886 4445567788889999999999987764 6778888999999998875433333   245


Q ss_pred             ccccccccccccCcchhhhHHHHhhchhccCCCCcccc
Q 039899           79 IEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSI  116 (341)
Q Consensus        79 L~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~  116 (341)
                      |+.|++.++.-....+..+..+ ..++.+++++|.+.+
T Consensus       179 L~~l~l~~N~l~~i~~~~f~~l-~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHPHAFRDL-GRLMTLYLFANNLSA  215 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCSC
T ss_pred             cchhhhhhccccccChhHhhhh-hhccccccccccccc
Confidence            6666665543222111212111 236778888888875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.42  E-value=2.4e-07  Score=83.79  Aligned_cols=69  Identities=25%  Similarity=0.353  Sum_probs=44.9

Q ss_pred             CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCcccccccc
Q 039899            7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQV   84 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~   84 (341)
                      +++|++|+|++|++..  +|..   +++|+.|+|++|+|+.+|..   +.+|+.|++++|++ +.+|.+|.+|+.|.+
T Consensus       283 ~~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~L-~~lp~~~~~L~~L~~  351 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIE--LPAL---PPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPL-REFPDIPESVEDLRM  351 (353)
T ss_dssp             CTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SSCCCCCTTCCEEEC
T ss_pred             CCCCCEEECCCCccCc--cccc---cCCCCEEECCCCcCCccccc---cCCCCEEECcCCcC-CCCCccccccCeeEC
Confidence            4567777777777753  6643   45677777777777777642   34677777777763 567777776665544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.40  E-value=2.3e-07  Score=83.60  Aligned_cols=106  Identities=18%  Similarity=0.161  Sum_probs=70.6

Q ss_pred             CCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCccccccCCC-C--Ccccccc
Q 039899            7 LCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQSLPQ-L--PSNIEQV   82 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~lP~-l--p~sL~~L   82 (341)
                      +++|+.|++++|... +..|..+..++.++.|++++|.+..+| ..+.++++|+.|+|++|++ ..||. +  .++|+.|
T Consensus       170 ~~~L~~L~l~~n~~~-~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L-~~lp~~l~~l~~L~~L  247 (305)
T d1xkua_         170 PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVV  247 (305)
T ss_dssp             CTTCSEEECTTSCCC-EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEE
T ss_pred             CCccCEEECCCCcCC-CCChhHhhccccccccccccccccccccccccccccceeeecccccc-cccccccccccCCCEE
Confidence            567888888888877 666777788888888888888888553 4677788888888888866 35554 2  2467777


Q ss_pred             ccccccccCcchh-hhH---HH--HhhchhccCCCCccc
Q 039899           83 QVNGCASLGTLSH-ALK---LC--KSIDVEVSKPIPHLS  115 (341)
Q Consensus        83 ~~~~c~sL~~l~~-~p~---~l--~~~l~~l~l~~n~~~  115 (341)
                      +++++ .|+.++. .+.   ..  ...++.+.+++|.+.
T Consensus       248 ~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         248 YLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             ECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ECCCC-ccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            77664 4555531 110   00  122566778888875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3.3e-07  Score=75.44  Aligned_cols=65  Identities=20%  Similarity=0.235  Sum_probs=47.9

Q ss_pred             CCCCCCCCcEEeccCCC-CCCCCCC-ccccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCcccc
Q 039899            3 SLLGLCSLTKLDISDCN-LGEGAIP-SDIGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRL   69 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~-l~eg~iP-~~i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l   69 (341)
                      .+.++++|+.|++++++ +.  .+| ..|.++++|+.|+|++|+|+.|| ..+..+++|+.|+|++|++.
T Consensus        26 ~l~~l~~l~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          26 HLPGAENLTELYIENQQHLQ--HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (156)
T ss_dssp             TSCSCSCCSEEECCSCSSCC--EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             cccCccccCeeecCCCcccc--ccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc
Confidence            35567778888887665 54  355 45778888888888888888775 45778888888888888874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.1e-07  Score=76.65  Aligned_cols=65  Identities=26%  Similarity=0.123  Sum_probs=57.5

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR   68 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~   68 (341)
                      +|.+|++|+.|+|++|+|. +.-|..+..+++|+.|+|++|.|+++|..+....+|+.|+|++|.+
T Consensus        51 ~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          51 DLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             GSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             hhccccccCcceeeccccC-CcccccccccccccceeccCCCCcccChhhhccccccccccCCCcc
Confidence            5788999999999999997 3335668999999999999999999998877777899999999976

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.36  E-value=3.8e-07  Score=82.45  Aligned_cols=96  Identities=20%  Similarity=0.210  Sum_probs=73.9

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCCCcccccccccccc
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQLPSNIEQVQVNGCA   88 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~lp~sL~~L~~~~c~   88 (341)
                      ++++|||+++.+++  +|+.   +++|+.|+|++|+|+++|..+   .+|+.|++++|++ ..++.+|+.|+.|+++++ 
T Consensus        39 ~l~~LdLs~~~L~~--lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l-~~l~~lp~~L~~L~L~~n-  108 (353)
T d1jl5a_          39 QAHELELNNLGLSS--LPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNL-KALSDLPPLLEYLGVSNN-  108 (353)
T ss_dssp             TCSEEECTTSCCSC--CCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCC-SCCCSCCTTCCEEECCSS-
T ss_pred             CCCEEEeCCCCCCC--CCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhccc-chhhhhcccccccccccc-
Confidence            58999999999964  9964   568999999999999999764   5789999999987 578999999999999765 


Q ss_pred             ccCcchhhhHHHHhhchhccCCCCcccc
Q 039899           89 SLGTLSHALKLCKSIDVEVSKPIPHLSI  116 (341)
Q Consensus        89 sL~~l~~~p~~l~~~l~~l~l~~n~~~~  116 (341)
                      .++.++.. .. ...++.++++++.+..
T Consensus       109 ~l~~lp~~-~~-l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         109 QLEKLPEL-QN-SSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             CCSSCCCC-TT-CTTCCEEECCSSCCSC
T ss_pred             ccccccch-hh-hccceeeccccccccc
Confidence            45555432 11 2346677777666553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.35  E-value=8.1e-07  Score=79.86  Aligned_cols=63  Identities=29%  Similarity=0.369  Sum_probs=54.1

Q ss_pred             CCCcEEeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCC-ChhccCCCCccEEEcCCccccccCC
Q 039899            8 CSLTKLDISDCNLGEGAIPS-DIGNICSLKELYLSKNRFFSL-PASINLLSKLWIIELEECQRLQSLP   73 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg~iP~-~i~~L~~L~~L~Ls~N~~~~L-P~si~~Ls~L~~L~Ls~c~~l~~lP   73 (341)
                      +++++|+|++|++.+  +|+ ++.++++|+.|++++|.+..+ |..|.++++|+.|++++|++. .+|
T Consensus        31 ~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~   95 (305)
T d1xkua_          31 PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELP   95 (305)
T ss_dssp             TTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCC
T ss_pred             CCCCEEECcCCcCCC--cChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCc
Confidence            679999999999964  875 689999999999999999977 557999999999999999864 444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.29  E-value=5.4e-07  Score=76.56  Aligned_cols=107  Identities=15%  Similarity=0.220  Sum_probs=79.1

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cccc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNI   79 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL   79 (341)
                      +.+..+++|++|+|++|+++.  ++. ++.+++|+.|++++|.+..+| .+.++..|+.|++++|.... ++.+  .++|
T Consensus        56 ~~l~~l~nL~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~L  130 (199)
T d2omxa2          56 DGVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITD-IDPLKNLTNL  130 (199)
T ss_dssp             TTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCC-CGGGTTCTTC
T ss_pred             cccccCCCcCcCccccccccC--ccc-ccCCccccccccccccccccc-cccccccccccccccccccc-ccccchhhhh
Confidence            346678999999999999973  554 899999999999999999988 48999999999999998764 2222  3567


Q ss_pred             cccccccccccCcchhhhHHHHhhchhccCCCCcccc
Q 039899           80 EQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSI  116 (341)
Q Consensus        80 ~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~  116 (341)
                      +.|+++++. +..++.+.  -...++.+++.+|.++.
T Consensus       131 ~~L~l~~n~-l~~~~~l~--~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2         131 NRLELSSNT-ISDISALS--GLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             SEEECCSSC-CCCCGGGT--TCTTCSEEECCSSCCCC
T ss_pred             HHhhhhhhh-hccccccc--ccccccccccccccccC
Confidence            777776652 33333211  12236677888887764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.27  E-value=4.8e-07  Score=83.08  Aligned_cols=61  Identities=28%  Similarity=0.341  Sum_probs=32.0

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR   68 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~   68 (341)
                      +..+..++.++++.|.+. +  +..+..+++++.|+|++|+++.+++ +..+++|+.|++++|++
T Consensus       281 ~~~~~~l~~l~~~~n~l~-~--~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         281 LAGLTALTNLELNENQLE-D--ISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             GTTCTTCSEEECCSSCCS-C--CGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCC
T ss_pred             cccccccccccccccccc-c--ccccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCC
Confidence            344455555555555554 1  2234555555555555555555542 55555555555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.24  E-value=6e-09  Score=89.64  Aligned_cols=60  Identities=18%  Similarity=0.153  Sum_probs=31.6

Q ss_pred             CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899            6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR   68 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~   68 (341)
                      .|++|+.|+|++|++.+  ++ .++.+++|+.|+|++|.++.+|..+..+.+|+.|++++|++
T Consensus        46 ~L~~L~~L~Ls~n~I~~--i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i  105 (198)
T d1m9la_          46 TLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI  105 (198)
T ss_dssp             HTTTCCEEECSEEEESC--CC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEEC
T ss_pred             cccccceeECcccCCCC--cc-cccCCccccChhhcccccccccccccccccccccccccccc
Confidence            34555555555555542  43 35555555555555555555554444444555555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.6e-06  Score=77.25  Aligned_cols=111  Identities=19%  Similarity=0.158  Sum_probs=82.1

Q ss_pred             CCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC-hhccCCCCccEEEcCCccccccCCCC---Ccc
Q 039899            3 SLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLP-ASINLLSKLWIIELEECQRLQSLPQL---PSN   78 (341)
Q Consensus         3 sl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP-~si~~Ls~L~~L~Ls~c~~l~~lP~l---p~s   78 (341)
                      .+..+.+|+.+++++|++. +..|..+..+++|+.|+|++|.++.+| ..+.++++|+.|++++|++.+..|..   .++
T Consensus       124 ~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~  202 (284)
T d1ozna_         124 LFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             ccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhh
Confidence            3566788999999999997 433456888999999999999999776 57889999999999999998766643   356


Q ss_pred             ccccccccccccCcch-hhhHHHHhhchhccCCCCcccc
Q 039899           79 IEQVQVNGCASLGTLS-HALKLCKSIDVEVSKPIPHLSI  116 (341)
Q Consensus        79 L~~L~~~~c~sL~~l~-~~p~~l~~~l~~l~l~~n~~~~  116 (341)
                      ++.|++++.. +..+. ..+..+ ..++.+++++|.+..
T Consensus       203 L~~L~l~~N~-i~~~~~~~~~~~-~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         203 LMTLYLFANN-LSALPTEALAPL-RALQYLRLNDNPWVC  239 (284)
T ss_dssp             CCEEECCSSC-CSCCCHHHHTTC-TTCCEEECCSSCEEC
T ss_pred             cccccccccc-cccccccccccc-cccCEEEecCCCCCC
Confidence            7777776653 33322 122111 237788899998864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.16  E-value=1.2e-06  Score=75.02  Aligned_cols=86  Identities=22%  Similarity=0.366  Sum_probs=61.2

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccccccCCCC--Cccc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRLQSLPQL--PSNI   79 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l~~lP~l--p~sL   79 (341)
                      |.+..+++|+.|++++|.+.+  + ..+..+++|+.+++++|.++.++ .+..+++|+.+++++|++.+ ++.+  .++|
T Consensus       106 ~~l~~l~~L~~L~l~~~~~~~--~-~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~-i~~l~~l~~L  180 (210)
T d1h6ta2         106 SSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISD-IVPLAGLTKL  180 (210)
T ss_dssp             GGGTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-CGGGTTCTTC
T ss_pred             ccccccccccccccccccccc--c-ccccccccccccccccccccccc-cccccccccccccccccccc-cccccCCCCC
Confidence            557778889999999988763  4 45777888888888888877655 46778888888888887643 4322  3567


Q ss_pred             cccccccccccCcc
Q 039899           80 EQVQVNGCASLGTL   93 (341)
Q Consensus        80 ~~L~~~~c~sL~~l   93 (341)
                      +.|+++++ .++.+
T Consensus       181 ~~L~Ls~N-~i~~l  193 (210)
T d1h6ta2         181 QNLYLSKN-HISDL  193 (210)
T ss_dssp             CEEECCSS-CCCBC
T ss_pred             CEEECCCC-CCCCC
Confidence            77777665 34444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.15  E-value=1.5e-06  Score=74.91  Aligned_cols=61  Identities=23%  Similarity=0.399  Sum_probs=36.1

Q ss_pred             CCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899            4 LLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR   68 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~   68 (341)
                      +.++++|+.|++++|.+..  ++ .++++++|+.|+|++|.++.+|. +.++++|+.|+|++|++
T Consensus       147 ~~~~~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSD--LT-PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCC
T ss_pred             hcccccccccccccccccc--ch-hhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcC
Confidence            3445556666666666542  22 35666666666666666666553 56666666666666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.09  E-value=1.3e-06  Score=75.34  Aligned_cols=60  Identities=25%  Similarity=0.412  Sum_probs=53.0

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCC
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEE   65 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~   65 (341)
                      +++.++++|+.|+|++|++..  +| .++.+++|++|+|++|+++.+|+ ++++++|+.|++++
T Consensus       167 ~~l~~l~~L~~L~Ls~n~l~~--l~-~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         167 TPLANLSKLTTLKADDNKISD--IS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGTTCTTCCEEECCSSCCCC--CG-GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred             hhhcccccceecccCCCccCC--Ch-hhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence            347789999999999999973  65 48999999999999999999984 89999999999974

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.08  E-value=3.5e-06  Score=77.14  Aligned_cols=63  Identities=27%  Similarity=0.404  Sum_probs=41.1

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCccc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQR   68 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~   68 (341)
                      |.+..+++|+.|++++|.+. + ++ .++.+++|+.|++++|.+..+|+ +..+..++.+.++.|++
T Consensus       235 ~~l~~l~~L~~L~l~~n~l~-~-~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l  297 (384)
T d2omza2         235 GTLASLTNLTDLDLANNQIS-N-LA-PLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL  297 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCC-C-CG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC
T ss_pred             chhhcccccchhccccCccC-C-CC-cccccccCCEeeccCcccCCCCc-ccccccccccccccccc
Confidence            34567778888888888886 3 44 37778888888888887776653 44444444444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.88  E-value=7.3e-08  Score=82.62  Aligned_cols=65  Identities=25%  Similarity=0.280  Sum_probs=56.3

Q ss_pred             CCCCCCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCChhccCCCCccEEEcCCcccc
Q 039899            2 PSLLGLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPASINLLSKLWIIELEECQRL   69 (341)
Q Consensus         2 Psl~~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~si~~Ls~L~~L~Ls~c~~l   69 (341)
                      +.+.+|++|+.|+|++|.+.+  +|.....+++|+.|++++|.++.++ .+..+++|+.|++++|++.
T Consensus        64 ~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N~i~  128 (198)
T d1m9la_          64 SSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             CCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEESEEECC
T ss_pred             ccccCCccccChhhccccccc--ccccccccccccccccccccccccc-cccccccccccccccchhc
Confidence            456678899999999999964  8876666778999999999999886 5888999999999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.5e-06  Score=76.45  Aligned_cols=86  Identities=15%  Similarity=0.271  Sum_probs=61.3

Q ss_pred             CCCCCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCChhccCCCCccEEEcCCcccccc--CC---CCCccc
Q 039899            6 GLCSLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-SLPASINLLSKLWIIELEECQRLQS--LP---QLPSNI   79 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-~LP~si~~Ls~L~~L~Ls~c~~l~~--lP---~lp~sL   79 (341)
                      ....|++|||++|.+.+..++..+..+++|++|+|+++.+. ..+..+.++++|+.|++++|...+.  +.   +-.++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            45678889999888763334455677888999999988877 5667788888899999988865431  11   113567


Q ss_pred             cccccccccccC
Q 039899           80 EQVQVNGCASLG   91 (341)
Q Consensus        80 ~~L~~~~c~sL~   91 (341)
                      +.|++++|..+.
T Consensus       124 ~~L~ls~c~~~~  135 (284)
T d2astb2         124 DELNLSWCFDFT  135 (284)
T ss_dssp             CEEECCCCTTCC
T ss_pred             cccccccccccc
Confidence            888887776554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=5.9e-06  Score=67.94  Aligned_cols=63  Identities=24%  Similarity=0.087  Sum_probs=45.0

Q ss_pred             CCCCCcEEeccCCCCCCCCCC---ccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccc
Q 039899            6 GLCSLTKLDISDCNLGEGAIP---SDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQ   70 (341)
Q Consensus         6 ~L~~L~~LdLs~~~l~eg~iP---~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~   70 (341)
                      .++.|++|+|++|+++.  ++   ..+..+++|+.|+|++|.|+.+++ ......+|+.|++++|.+..
T Consensus        63 ~~~~L~~L~Ls~N~i~~--l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSSCCCC--CSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hCCCCCEeeCCCccccC--CchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            46778888888888863  43   345678888888888888887775 22234467888888887754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=6e-05  Score=64.67  Aligned_cols=81  Identities=21%  Similarity=0.188  Sum_probs=55.2

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEE-EccCCCCCCCCh-hccCCCCccEEEcCCccccccCCC-CCccccccccc
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKEL-YLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQ-LPSNIEQVQVN   85 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L-~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~-lp~sL~~L~~~   85 (341)
                      .++.|++++|++..  ++......++++.+ .+++|.++.||. .+.++++|+.|+|++|++. .+|. ...++..|..-
T Consensus       154 ~l~~L~l~~n~l~~--i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         154 ESVILWLNKNGIQE--IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRAR  230 (242)
T ss_dssp             SCEEEECCSSCCCE--ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESS
T ss_pred             cceeeecccccccc--cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccC
Confidence            67788888888863  77776667776555 467778888886 4688999999999999874 5553 34444444433


Q ss_pred             cccccCc
Q 039899           86 GCASLGT   92 (341)
Q Consensus        86 ~c~sL~~   92 (341)
                      ++.+|+.
T Consensus       231 ~~~~l~~  237 (242)
T d1xwdc1         231 STYNLKK  237 (242)
T ss_dssp             SEESSSC
T ss_pred             cCCCCCc
Confidence            3333433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.3e-05  Score=67.49  Aligned_cols=101  Identities=13%  Similarity=0.122  Sum_probs=58.9

Q ss_pred             CcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCh-hccCCCCccEEEcCCccccccCCCC----Ccccccccc
Q 039899           10 LTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFFSLPA-SINLLSKLWIIELEECQRLQSLPQL----PSNIEQVQV   84 (341)
Q Consensus        10 L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~~LP~-si~~Ls~L~~L~Ls~c~~l~~lP~l----p~sL~~L~~   84 (341)
                      .+.++.++.++++  +|..+.  +++++|+|++|.|+.+|. .+.++++|+.|++++|...+.+|.-    -+.++.|.+
T Consensus        10 ~~~i~c~~~~l~~--iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          10 NRVFLCQESKVTE--IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SSEEEEESCSCSS--CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCEEEEeCCCCCC--cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            4567777777754  776553  467888888888877775 4677888888888887776655431    124444444


Q ss_pred             ccccccCcch-hhhHHHHhhchhccCCCCccc
Q 039899           85 NGCASLGTLS-HALKLCKSIDVEVSKPIPHLS  115 (341)
Q Consensus        85 ~~c~sL~~l~-~~p~~l~~~l~~l~l~~n~~~  115 (341)
                      ..+..+..+. ..+..+ ..++.+.++++.+.
T Consensus        86 ~~~n~l~~~~~~~~~~l-~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNL-PNLQYLLISNTGIK  116 (242)
T ss_dssp             ECCTTCCEECTTSEECC-TTCCEEEEESCCCC
T ss_pred             ccccccccccccccccc-ccccccccchhhhc
Confidence            4444443322 111111 12555666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=7.6e-06  Score=75.93  Aligned_cols=106  Identities=12%  Similarity=0.122  Sum_probs=56.4

Q ss_pred             CCcEEeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCccccc--------cCCCC
Q 039899            9 SLTKLDISDCNLGEGAIPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQRLQ--------SLPQL   75 (341)
Q Consensus         9 ~L~~LdLs~~~l~eg~iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~l~--------~lP~l   75 (341)
                      .|+.||++++++++..+..-++.+++|+.|+|++|.++     .|+..+..+++|+.|+|++|++..        .++..
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            46677777777763222333455666777777777665     344555666777777777766521        12222


Q ss_pred             CccccccccccccccCcch--hhhHHHH--hhchhccCCCCccc
Q 039899           76 PSNIEQVQVNGCASLGTLS--HALKLCK--SIDVEVSKPIPHLS  115 (341)
Q Consensus        76 p~sL~~L~~~~c~sL~~l~--~~p~~l~--~~l~~l~l~~n~~~  115 (341)
                      ..+|+.|++.+|. ++...  .++..+.  ..++.+++++|.++
T Consensus        83 ~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCC-ccccccccccchhhccccccccccccccch
Confidence            3456666666653 33221  1222221  23555666665543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=7.8e-05  Score=66.32  Aligned_cols=107  Identities=20%  Similarity=0.233  Sum_probs=70.0

Q ss_pred             CCCCcEEeccCCC--CCCCCCCccccCCCCCcEEEccCCC-CC-CCChhccCCCCccEEEcCCccccc-----cCCCCCc
Q 039899            7 LCSLTKLDISDCN--LGEGAIPSDIGNICSLKELYLSKNR-FF-SLPASINLLSKLWIIELEECQRLQ-----SLPQLPS   77 (341)
Q Consensus         7 L~~L~~LdLs~~~--l~eg~iP~~i~~L~~L~~L~Ls~N~-~~-~LP~si~~Ls~L~~L~Ls~c~~l~-----~lP~lp~   77 (341)
                      .++|+.|++++|.  +.+..+..-..++++|+.|+|++|. ++ ..+..+.++++|++|+|++|....     .+... +
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~-~  225 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI-P  225 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC-T
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcC-C
Confidence            3679999999874  4322233334668999999999874 66 566789999999999999986432     22223 3


Q ss_pred             cccccccccccccCcchhhhHHHHhhchhccCCCCcccccc
Q 039899           78 NIEQVQVNGCASLGTLSHALKLCKSIDVEVSKPIPHLSIVV  118 (341)
Q Consensus        78 sL~~L~~~~c~sL~~l~~~p~~l~~~l~~l~l~~n~~~~~l  118 (341)
                      +|+.|++.+|.+-..+..    +...+..+.+..+.++.+.
T Consensus       226 ~L~~L~l~~~~~d~~l~~----l~~~lp~L~i~~~~ls~~~  262 (284)
T d2astb2         226 TLKTLQVFGIVPDGTLQL----LKEALPHLQINCSHFTTIA  262 (284)
T ss_dssp             TCCEEECTTSSCTTCHHH----HHHHSTTSEESCCCSCCTT
T ss_pred             CCCEEeeeCCCCHHHHHH----HHHhCccccccCccCCCCC
Confidence            778888888744333332    3333455555556666443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.00075  Score=61.86  Aligned_cols=107  Identities=21%  Similarity=0.265  Sum_probs=59.6

Q ss_pred             CCCCcEEeccCCCCCCCCC----CccccCCCCCcEEEccCCCCC-----CCChhcc-CCCCccEEEcCCcccccc----C
Q 039899            7 LCSLTKLDISDCNLGEGAI----PSDIGNICSLKELYLSKNRFF-----SLPASIN-LLSKLWIIELEECQRLQS----L   72 (341)
Q Consensus         7 L~~L~~LdLs~~~l~eg~i----P~~i~~L~~L~~L~Ls~N~~~-----~LP~si~-~Ls~L~~L~Ls~c~~l~~----l   72 (341)
                      ...|+.+++++|.+. ..-    ...+....+|++|+|++|.+.     .++..+. ..+.|+.|+|++|.+...    |
T Consensus       311 ~~~L~~l~l~~~~l~-~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l  389 (460)
T d1z7xw1         311 GCQLESLWVKSCSFT-AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL  389 (460)
T ss_dssp             TCCCCEEECTTSCCB-GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             ccccccccccccchh-hhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHH
Confidence            356888888888875 221    122344567888888888875     3444554 356688888888876421    1


Q ss_pred             CC-C--CccccccccccccccCc--chhhhHHHH---hhchhccCCCCccc
Q 039899           73 PQ-L--PSNIEQVQVNGCASLGT--LSHALKLCK---SIDVEVSKPIPHLS  115 (341)
Q Consensus        73 P~-l--p~sL~~L~~~~c~sL~~--l~~~p~~l~---~~l~~l~l~~n~~~  115 (341)
                      ++ +  -++|+.|++++. .+..  +..+...+.   ..++.+.+.++.+.
T Consensus       390 ~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         390 AATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            11 1  145677776554 2221  111222221   13566666666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.00011  Score=60.01  Aligned_cols=40  Identities=30%  Similarity=0.357  Sum_probs=31.7

Q ss_pred             cCCCCCcEEEccCCCCCCCC---hhccCCCCccEEEcCCcccc
Q 039899           30 GNICSLKELYLSKNRFFSLP---ASINLLSKLWIIELEECQRL   69 (341)
Q Consensus        30 ~~L~~L~~L~Ls~N~~~~LP---~si~~Ls~L~~L~Ls~c~~l   69 (341)
                      ..+++|+.|+|++|.++.++   ..+..+++|+.|+|++|++.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            35788999999999888654   45677888999999988874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.16  E-value=0.008  Score=53.72  Aligned_cols=61  Identities=18%  Similarity=0.252  Sum_probs=29.0

Q ss_pred             CCCcEEeccCCCCCCC----CCCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCccc
Q 039899            8 CSLTKLDISDCNLGEG----AIPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQR   68 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg----~iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~   68 (341)
                      +.|+.|+|++|.+...    .+...+...++|+.|+|++|.|.     .+...+..+++|+.|+|++|.+
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence            3455555555554310    01222444555555555555544     1333445555555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.54  E-value=0.0086  Score=53.51  Aligned_cols=84  Identities=18%  Similarity=0.127  Sum_probs=57.1

Q ss_pred             CCCCCCCcEEeccCCCCCCC---CCCccccCCCCCcEEEccCCCCCC-----CChhccC--CCCccEEEcCCcccccc--
Q 039899            4 LLGLCSLTKLDISDCNLGEG---AIPSDIGNICSLKELYLSKNRFFS-----LPASINL--LSKLWIIELEECQRLQS--   71 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg---~iP~~i~~L~~L~~L~Ls~N~~~~-----LP~si~~--Ls~L~~L~Ls~c~~l~~--   71 (341)
                      +..+++|+.|+|++|.+...   .+...+...++|+.|+|++|.+..     +-..+..  -..|+.|++++|++...  
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~  290 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV  290 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHH
Confidence            55678899999999998521   134557788999999999999883     2223333  35799999999986431  


Q ss_pred             --CCC----CCccccccccccc
Q 039899           72 --LPQ----LPSNIEQVQVNGC   87 (341)
Q Consensus        72 --lP~----lp~sL~~L~~~~c   87 (341)
                        +..    -.+.|+.|++.+.
T Consensus       291 ~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         291 RTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTS
T ss_pred             HHHHHHHHccCCCCCEEECCCC
Confidence              111    1245777777553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.05  E-value=0.014  Score=47.08  Aligned_cols=81  Identities=11%  Similarity=0.127  Sum_probs=56.0

Q ss_pred             CCCCCcEEeccCCC-CCCCC---CCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCcccccc-----
Q 039899            6 GLCSLTKLDISDCN-LGEGA---IPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQRLQS-----   71 (341)
Q Consensus         6 ~L~~L~~LdLs~~~-l~eg~---iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~l~~-----   71 (341)
                      +.+.|+.|+|++++ +.+..   +-..+..-++|+.|+|++|.+.     .+-..+...+.|+.|+|++|.+...     
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            45789999999854 54211   2234667788999999999887     3444667778999999999987532     


Q ss_pred             ---CCCCCccccccccccc
Q 039899           72 ---LPQLPSNIEQVQVNGC   87 (341)
Q Consensus        72 ---lP~lp~sL~~L~~~~c   87 (341)
                         +.. -.+|+.|++.++
T Consensus        93 ~~aL~~-n~sL~~L~l~~n  110 (167)
T d1pgva_          93 LRSTLV-TQSIVEFKADNQ  110 (167)
T ss_dssp             HHHTTT-TCCCSEEECCCC
T ss_pred             HHHHHh-CCcCCEEECCCC
Confidence               111 246777777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.11  E-value=0.037  Score=44.40  Aligned_cols=59  Identities=14%  Similarity=0.146  Sum_probs=24.6

Q ss_pred             CCCcEEeccCCCCCCC---CCCccccCCCCCcEEEccCCCCCC-----CChhccCCCCccEEEcCCc
Q 039899            8 CSLTKLDISDCNLGEG---AIPSDIGNICSLKELYLSKNRFFS-----LPASINLLSKLWIIELEEC   66 (341)
Q Consensus         8 ~~L~~LdLs~~~l~eg---~iP~~i~~L~~L~~L~Ls~N~~~~-----LP~si~~Ls~L~~L~Ls~c   66 (341)
                      ++|+.|+|++|.+.+.   .+...+...+.|+.|+|++|.+..     +=..+..-..|+.|+|++|
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            3455555555544310   111223333445555555554441     1123333444555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.67  E-value=0.044  Score=43.60  Aligned_cols=64  Identities=11%  Similarity=0.100  Sum_probs=47.0

Q ss_pred             CCCCCcEEeccCC-CCCCCC---CCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCcccc
Q 039899            6 GLCSLTKLDISDC-NLGEGA---IPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEECQRL   69 (341)
Q Consensus         6 ~L~~L~~LdLs~~-~l~eg~---iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c~~l   69 (341)
                      +.+.|++|+|+++ .+..+.   +-..+...++|+.|+|++|.+.     .|-..+...++|+.|++++|...
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            4578999999984 464211   2234567889999999999887     23345677789999999998764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=81.84  E-value=0.18  Score=39.71  Aligned_cols=63  Identities=14%  Similarity=0.130  Sum_probs=46.3

Q ss_pred             CCCCCCCcEEeccCCCCCCCC---CCccccCCCCCcEEEccCCCCC-----CCChhccCCCCccEEEcCCc
Q 039899            4 LLGLCSLTKLDISDCNLGEGA---IPSDIGNICSLKELYLSKNRFF-----SLPASINLLSKLWIIELEEC   66 (341)
Q Consensus         4 l~~L~~L~~LdLs~~~l~eg~---iP~~i~~L~~L~~L~Ls~N~~~-----~LP~si~~Ls~L~~L~Ls~c   66 (341)
                      +...++|+.|+|++|.+.+..   +-..+...++|+.|++++|.+.     .+-..+...++|+.+.|+.+
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~  112 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQ  112 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCC
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccC
Confidence            346788999999999986211   2234566789999999999887     34456777888988777643