Citrus Sinensis ID: 039943

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-
Protein Sequence
MGTHSEEKNMITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCREEASEALDEKDGMEEEC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEccccHHHcHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEcccccccccccccccccHHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHcccccccccHHHHccccccccccccccccEEHccEEEEEccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgthseeknmitepllinknpkgglrtlpfIIANEAFERMASMGLMPNMILYLCGeynmettagTNVLLIWTAATNFLPIIGAFLadscvgrypmigfGCITYLLGVVLLWLTTILsqaqppacdqlrsdceSATWSQLMLLYSALGLmslggggirssslafgaeqlekgdenkskgaLQSYFSWYYVSVLASSMVAVTCIVYIQdnlgwkvgfGVPAVISLLSALSFFlaspfyvqskaNTSLLTGLIQVLVASYKNrhiklssqtteemyhprkgsmllvpsenlrclnkaciikhpgqdstpdrrasnpwslcTVDQVEELKALIKVIPLWSTGIMIAVTIsqssfpvlqastmdrhitpnfeipsgsfgiFTIITVILWIGFYDRILQPiaskirgkpcqlRLKQRMGIGLLFSTASMAAWAITETVRRNIAinegisddpRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFyyselprsmSSIASALHGLGMSVASLVASFIMNAVDEITkrggkegwipsninkgryDYYYWLLAGLNMASFIYFLACCKAygpcreeasealdekdgmeeec
Flexible Loop (DISEMBL)
mgthseeknmitepllinknpkggLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLssqtteemyhprKGSMLLVPSENLRCLNKACIIKhpgqdstpdrrasnPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRHITPNfeipsgsfgIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAinegisddprAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEitkrggkegwipsninKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCREEAsealdekdgmeeec
Low Complexity Region (SEG)
MGTHSEEKNMITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQlmllysalglmslggggirssslAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVIsllsalsfflasPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCREEASEALDEKDGMEEEC
Disordered region (IsUnstruct)
**************LLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIR*********************ALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKL**************SMLLVPSENLRCLNKACIIKH*************PWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPC******************
Disordered Region (DISOPRED)
***********************GLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACD***S*CESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGD****KGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKL**********************NLRCLNKACI******************SLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAY*********************
Disordered Region (DISEMBL)
********NMITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQ*********KGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHP***********NPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCREE***************
Disordered Region (DISPRO)
****SEEKNMITEPLLIN**PKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQD****RRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCRE****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGTHSEEKNMITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCREEASEALDEKDGMEEEC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	581	2.2.26 [Sep-21-2011]
Q9M817	607	Probable peptide transpor	yes	no	0.963	0.922	0.519	1e-171
Q8LPL2	591	Probable peptide/nitrate	no	no	0.986	0.969	0.495	1e-167
Q9LYD5	481	Putative peptide/nitrate	no	no	0.817	0.987	0.408	1e-112
Q8RX77	620	Nitrate transporter 1.7 O	no	no	0.924	0.866	0.370	1e-108
Q9SX20	596	Probable nitrite transpor	no	no	0.975	0.951	0.352	1e-100
Q9M390	570	Peptide transporter PTR1	no	no	0.939	0.957	0.359	6e-99
Q9LV10	616	Probable peptide/nitrate	no	no	0.920	0.868	0.336	4e-98
Q9M9V7	587	Probable peptide/nitrate	no	no	0.908	0.899	0.339	4e-96
Q93Z20	590	Probable peptide/nitrate	no	no	0.905	0.891	0.372	4e-95
Q9LFB8	570	Peptide transporter PTR5	no	no	0.920	0.938	0.349	1e-94

>sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1

 Score =  603 bits (1554), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 295/568 (51%), Positives = 405/568 (71%), Gaps = 8/568 (1%)

Query: 19  KNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFL 78
           K  KGG+ T+PFIIANEAFE++AS GL+PNMI+YL  +Y      GTNVL +W+AA+NF 
Sbjct: 19  KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78

Query: 79  PIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLR--SDCESATW 136
           P++GAFL+DS +GR+  I    ++  LG+VLLWLT +L Q +P  CD     S C S+T 
Sbjct: 79  PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTA 138

Query: 137 SQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSM 196
           SQL LLYSA  L+S+G GGIR  SLAFGA+QL+  +  K++  L+S+F WYY S   + +
Sbjct: 139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVL 198

Query: 197 VAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVAS 256
           +A T IVYIQ++LGWK+GFGVPAV+ L++AL F LASP YV      SL TGL Q +VA+
Sbjct: 199 IAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAA 258

Query: 257 YKNRHIKL-SSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWS 315
           YK R + L     + + Y+  K S +  PS+ LR LNKAC+I +  ++   D  A NPW 
Sbjct: 259 YKKRKLSLPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKACLISNREEEIGSDGFALNPWR 318

Query: 316 LCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRHIT---PNFEIPSGS 372
           LCT D+VEELKALIKVIP+WSTGIM+++  SQSSF +LQA++MDR ++    +F++P+GS
Sbjct: 319 LCTTDKVEELKALIKVIPIWSTGIMMSINTSQSSFQLLQATSMDRRLSRHGSSFQVPAGS 378

Query: 373 FGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETV 432
           FG+FTII + LW+  YDR + P+ASKIRG+P +L +K RMG+GL  S  +MA  A+ E+ 
Sbjct: 379 FGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSFLAMAISAMVESF 438

Query: 433 RRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIAS 492
           RR  AI++G +++  AVV +SAMW++P +VL GLA A   IGQ EF+Y+E P+SMSSIA+
Sbjct: 439 RRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQTEFFYTEFPKSMSSIAA 498

Query: 493 ALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIY 552
           +L GLGM+VASL+AS ++NAV+E+T R GKE W+  NINKG Y+YYYW+LA ++  + IY
Sbjct: 499 SLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYYYWVLAIMSFINVIY 558

Query: 553 FLACCKAYGPCREEASEALDEKDGMEEE 580
           ++ C  +YGP  ++        +G+ EE
Sbjct: 559 YVICSWSYGPLVDQVRNG--RVNGVREE 584

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2

 Score =  588 bits (1515), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 288/581 (49%), Positives = 403/581 (69%), Gaps = 8/581 (1%)

Query: 4   HSEEKNMITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTA 63
            +E K  + +P+   +  KGGL T+PFIIANE FE++AS GL+ NMILYL  +Y +    
Sbjct: 7   QTESKETLQQPI-TRRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVK 65

Query: 64  GTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPA 123
           G  VL +W AATNF+P++GAFL+DS +GR+  I    ++ LLG+V+LWLT +L Q +P  
Sbjct: 66  GQTVLFMWVAATNFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSP 125

Query: 124 C-DQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS 182
           C     ++C SAT SQL LLY+A  L+S+G GGIR  SLAFGA+QL+  +  K++  L+S
Sbjct: 126 CVATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLES 185

Query: 183 YFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKAN 242
           +F WYY S   + ++A T IVYIQD+LGWK+GFG+PA++ LL+   F  ASP YV+   +
Sbjct: 186 FFGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVS 245

Query: 243 TSLLTGLIQVLVASYKNRHIKL-SSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPG 301
            SL TGL QV+ A+Y  R++ L     + + Y+  K S L  PS+ LR LNKAC I +  
Sbjct: 246 KSLFTGLAQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELKAPSDKLRFLNKACAISNRD 305

Query: 302 QDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRH 361
           +D   D  A N W LCT DQVE+LKAL+KVIP+WSTGIM+++ +SQ+SF +LQA +MDR 
Sbjct: 306 EDLGSDGLALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQNSFQLLQAKSMDRR 365

Query: 362 ITPN--FEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFS 419
           ++ N  F+IP+GSFG+FTII +I W+  YDR + P+ASKIRG+P ++ +K RMG+GL  S
Sbjct: 366 LSSNSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFIS 425

Query: 420 TASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFY 479
             +MA  A  E  RR  AI++G+++D  + V +SAMW++P +VL GLA A   IGQ EF+
Sbjct: 426 FLAMAVSATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEFF 485

Query: 480 YSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYY 539
           Y+E P+SMSSIA++L GLGM+VA+++AS I+NAV   +K+G    WI  NINKG YDYYY
Sbjct: 486 YTEFPKSMSSIAASLFGLGMAVANILASVILNAVKNSSKQGNVS-WIEDNINKGHYDYYY 544

Query: 540 WLLAGLNMASFIYFLACCKAYGPCREEASEALDEKDGMEEE 580
           W+LA L+  + IY++ C  +YGP  ++     D+ +GM +E
Sbjct: 545 WVLAILSFVNVIYYVVCSWSYGPTVDQVRN--DKVNGMRKE 583

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYD5|PTR48_ARATH Putative peptide/nitrate transporter At5g11570 OS=Arabidopsis thaliana GN=At5g11570 PE=2 SV=1

 Score =  404 bits (1039), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/558 (40%), Positives = 328/558 (58%), Gaps = 83/558 (14%)

Query: 10  MITEPLLINKNP-KGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVL 68
           M  E LL+ +   K G+ T+PFI+A++A E++A  GL+PNMIL+L  EY M T    N+L
Sbjct: 1   MDQEALLVGRTLLKRGIPTIPFILASQALEKLAYFGLVPNMILFLTVEYGMGTAEAANIL 60

Query: 69  LIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLR 128
            +W+AATNF P++GAF+ADS  GR+P+IGFG    L G+VLLWLTTI+     P CD+L 
Sbjct: 61  FLWSAATNFFPLVGAFIADSYTGRFPLIGFGSSISLTGMVLLWLTTIIR----PECDKLT 116

Query: 129 SDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENK-SKGALQSYFSWY 187
           + C+  T  + +LLYS   L ++G GG+RSS LAF A+QL+    ++ +  +L++ F+WY
Sbjct: 117 NVCQPTTLLKSVLLYSFFALTAIGAGGVRSSCLAFAADQLQPNQTSRVTTSSLETLFNWY 176

Query: 188 YVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLT 247
           Y SV+ +  ++ + +V++Q   GW++GFGV      LS   FF ASP+YV+ +       
Sbjct: 177 YFSVMVACFLSQSLLVFVQTTYGWQIGFGVSVAAMALSVALFFAASPYYVRFQK------ 230

Query: 248 GLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPD 307
                                               P+ N R   K C ++         
Sbjct: 231 ------------------------------------PTRNSRNPWKLCRVQ--------- 245

Query: 308 RRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIA-VTISQSSFPVLQASTMDRH-ITPN 365
                        QVE+LK+LI VIP+WSTGI+++ VT  Q SF VLQA TMDRH     
Sbjct: 246 -------------QVEDLKSLINVIPIWSTGIILSLVTACQVSFIVLQAKTMDRHTFIQG 292

Query: 366 FEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAA 425
           FEIP GS+GIF +I+ +L++G YD ++ P+ S    +P +L +  RM  G + S   ++A
Sbjct: 293 FEIPPGSYGIFLVISFLLFLGLYDLVIVPLLSWALREPFRLGVMVRMWAGYVISVLCISA 352

Query: 426 WAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPR 485
            A TE  RR  A +E  +       K+SAMW+LPY +L G+A A N I Q EF+YSELP+
Sbjct: 353 LAATEYARRKTARDESGT-------KLSAMWLLPYMILGGIAEALNTIAQNEFFYSELPK 405

Query: 486 SMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGL 545
           +MSS+A+ L  L M+ ASL++S+I+  VD +T  G    WI  NI++G  DYYYWLL GL
Sbjct: 406 TMSSVATTLSSLNMAAASLISSWIITIVD-VTTYG---SWITENIDEGHLDYYYWLLVGL 461

Query: 546 NMASFIYFLACCKAYGPC 563
           ++ + +YF+ C K+YG C
Sbjct: 462 SLLNVLYFVWCKKSYGKC 479

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1

 Score =  393 bits (1009), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/551 (37%), Positives = 324/551 (58%), Gaps = 14/551 (2%)

Query: 17  INKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATN 76
           + K P GG R + FI+ NE  ER+ S+GL+ N ++YL   +++E     NV+ IW+  TN
Sbjct: 48  VEKKP-GGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTN 106

Query: 77  FLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACD-QLRSDCESAT 135
             P++GA+++D+ VGR+  I F     LLG++ + LT    Q  P +C+ Q    C    
Sbjct: 107 LTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPN 166

Query: 136 WSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASS 195
             Q+ +L   L  +S+G GGIR  S+ FG +Q ++  E   KG + S+F+WYY++     
Sbjct: 167 KLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKG-VASFFNWYYMTFTVVL 225

Query: 196 MVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVA 255
           ++  T +VYIQD + W +GF +P  +  L+ + FF     YV  K   S+ +G+ QV+VA
Sbjct: 226 IITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVA 285

Query: 256 SYKNRHIKLSSQT--TEEMYHPR-KGSML--LVPSENLRCLNKACIIKHPGQDSTPDRRA 310
           + K R +KL ++   T   Y P  K S+L  L  S   RCL+KA ++     D TP+   
Sbjct: 286 ARKKRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVIE--GDLTPEGPP 343

Query: 311 SNPWSLCTVDQVEELKALIKVIPLWSTGIM-IAVTISQSSFPVLQASTMDRHITPNFEIP 369
           ++ W LC+V +VEE+K LI+++P+WS GI+ +A   +Q +F V QA  MDR++ P FEIP
Sbjct: 344 ADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFEIP 403

Query: 370 SGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAIT 429
           +GS  + +++T+ +++ FYDR+  P   +I G    + L QR+G G++F+  SM    I 
Sbjct: 404 AGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAGIV 463

Query: 430 ETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSS 489
           E +RR  +IN G   DP  +  MS  W+ P  +L GL  AFN+IGQIEF+ S+ P  M S
Sbjct: 464 ERMRRIRSINAG---DPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRS 520

Query: 490 IASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMAS 549
           IA++L  L  + +S ++SF++  V + +    +  W+  N+N G+ DY+Y+L+A L + +
Sbjct: 521 IANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIAVLGVVN 580

Query: 550 FIYFLACCKAY 560
            +YF  C + Y
Sbjct: 581 LVYFWYCARGY 591

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/582 (35%), Positives = 333/582 (57%), Gaps = 15/582 (2%)

Query: 6   EEKNMITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGT 65
           EEK +   P      PKGGL T+PFI ANE  E++A +G   NMI YL  + ++  T   
Sbjct: 12  EEKQLHGRP----NRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAA 67

Query: 66  NVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACD 125
           N L  +   ++  P++GAF+ADS  GR+  I F  I Y +G+ LL ++ I+   +PP C 
Sbjct: 68  NTLTNFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCK 127

Query: 126 QLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS 185
                C  A  +QL +LY AL L +LG GGIR   +AFGA+Q ++ D N++     +YF+
Sbjct: 128 G-EEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTW-NYFN 185

Query: 186 WYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSL 245
           WYY  + A+ ++AVT +V+IQDN+GW +G G+P V   LS ++F      Y       S 
Sbjct: 186 WYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSP 245

Query: 246 LTGLIQVLVASYKNRHIKLSSQTT-----EEMYHPRKGSMLLVPSENLRCLNKACIIKHP 300
            T LIQV VA+++ R +++ S  +     +E+  P      L  ++++  L+KA I+   
Sbjct: 246 FTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTE- 304

Query: 301 GQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIM-IAVTISQSSFPVLQASTMD 359
            +D+    +  N W L TV +VEELK++I++ P+ ++GI+ I     Q +F + QA TM+
Sbjct: 305 -EDNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMN 363

Query: 360 RHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFS 419
           RH+T +F+IP+GS  +FT + ++  I FYDR+   +A K  G    +    RMGIG + S
Sbjct: 364 RHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVIS 423

Query: 420 TASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFY 479
             +       E  R+++AI  G+ D P  +V +S +W++P + L G+A AF  IG +EF+
Sbjct: 424 IIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFF 483

Query: 480 YSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIP-SNINKGRYDYY 538
           Y + P SM S A+AL  + +S+ + V++ ++  V + + +     W+P +N+N+GR +Y+
Sbjct: 484 YDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYF 543

Query: 539 YWLLAGLNMASFIYFLACCKAYGPCREEASEALDEKDGMEEE 580
           YWL+  L   + +Y+L C K Y     +   + ++   ++EE
Sbjct: 544 YWLITVLQAVNLVYYLWCAKIYTYKPVQVHHSKEDSSPVKEE 585

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  362 bits (928), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 204/568 (35%), Positives = 319/568 (56%), Gaps = 22/568 (3%)

Query: 6   EEKNMITEP--LLINKNP-----KGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYN 58
           EEK++ T+   + I+KNP      G  +   FI+ NE  ER+A  G+  N++ YL    N
Sbjct: 2   EEKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLN 61

Query: 59  METTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQ 118
                  N +  W+      P+IGAF+AD+ +GRY  I      Y+ G+ LL L+  +  
Sbjct: 62  QGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPG 121

Query: 119 AQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKG 178
            +P  C+   +D      SQ  + + AL +++LG GGI+    +FGA+Q ++ DEN+ K 
Sbjct: 122 LKPGNCN---ADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENE-KI 177

Query: 179 ALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQ 238
              S+F+W+Y S+   +++A T +V+IQ N+GW  GFGVP V  +++   FF  S FY  
Sbjct: 178 KKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRL 237

Query: 239 SKANTSLLTGLIQVLVASYKNRHIKLSSQT-----TEEMYHPRKGSMLLVPSENLRCLNK 293
            +   S LT + QV+VA+++   +K+         T +     KGS  LV ++NL+  +K
Sbjct: 238 QRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDK 297

Query: 294 ACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFPV 352
           A +      DS  D    NPW LC+V QVEELK++I ++P+W+TGI+ A   SQ S+  V
Sbjct: 298 AAV--ESQSDSIKDGEV-NPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFV 354

Query: 353 LQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRM 412
           LQ +TMD+H+  NFEIPS S  +F  ++V+ W   YD+ + P+A K           QRM
Sbjct: 355 LQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRM 414

Query: 413 GIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNM 472
           GIGL+ S  +M    + E VR +        D  +  + MS  W +P ++L G A  F  
Sbjct: 415 GIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQ--IHMSIFWQIPQYLLIGCAEVFTF 472

Query: 473 IGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINK 532
           IGQ+EF+Y + P +M S+ SAL    +++ + +++ ++  V +ITK+ GK GWIP N+N+
Sbjct: 473 IGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNR 532

Query: 533 GRYDYYYWLLAGLNMASFIYFLACCKAY 560
           G  DY+++LLA L+  +F+ +L   K Y
Sbjct: 533 GHLDYFFYLLATLSFLNFLVYLWISKRY 560

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1

 Score =  359 bits (921), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 309/546 (56%), Gaps = 11/546 (2%)

Query: 24  GLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGA 83
           G + +PFII NE FE++  +G + N+++YL   +N+++     ++  ++   NF   + A
Sbjct: 46  GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGTINFGTFVAA 105

Query: 84  FLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQL-RSDCESATWSQLMLL 142
           FL D+  GRY  +    I   LG  ++ LT  + Q  P AC     S C   +  Q+  L
Sbjct: 106 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAADSICNGPSGGQIAFL 165

Query: 143 YSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCI 202
              LG + +G GGIR  +LAFGA+Q     E+  +G + S+F+WY+ +   + ++++T +
Sbjct: 166 LMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRG-IDSFFNWYFFTFTFAQILSLTLV 224

Query: 203 VYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHI 262
           VY+Q N+ W +G  +PAV+  L+ L FF     YV+ KA+ S L G+ QV+  + K R +
Sbjct: 225 VYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGL 284

Query: 263 KLSSQTTEEMYH---PRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTV 319
           K + Q    +Y+   P+  +  L  ++  R L+KA I+  P     PD + ++PW LCT+
Sbjct: 285 KPAKQPWLNLYNYYPPKYANSKLKYTDQFRFLDKAAILT-PEDKLQPDGKPADPWKLCTM 343

Query: 320 DQVEELKALIKVIPLWSTGIMIAVTISQS-SFPVLQASTMDRHI-TPNFEIPSGSFGIFT 377
            QVEE+K +++V+P+W    +  +TI+Q  ++PV QA   DR + +  F IP+ ++ +F 
Sbjct: 344 QQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRLGSGGFVIPAATYVVFL 403

Query: 378 IITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIA 437
           +  + ++I  YDR+L P   +I G    + L QR+G G+ F+TAS+      E  RR  A
Sbjct: 404 MTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATASLVVAGFVEERRRTFA 463

Query: 438 INE---GISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASAL 494
           + +   G++     +  MSAMW++P   L+G+A AF  IGQ+EFYY + P +M S A ++
Sbjct: 464 LTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQMEFYYKQFPENMRSFAGSI 523

Query: 495 HGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFL 554
             +G  V+S + SF++  V   T+      W+  ++NKGR D +Y+++AG+   +F YFL
Sbjct: 524 FYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGRLDLFYFMIAGILAVNFAYFL 583

Query: 555 ACCKAY 560
              + Y
Sbjct: 584 VMSRWY 589

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1

 Score =  352 bits (903), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 187/551 (33%), Positives = 314/551 (56%), Gaps = 23/551 (4%)

Query: 24  GLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGA 83
           G + +PFII NE FE++  +G   N+++YL   +NM++     V+ I+   +NF  I+ A
Sbjct: 22  GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81

Query: 84  FLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPAC-DQLRSDCESATWSQLMLL 142
           FL DS  GRY  + F  I   LG V + LT ++    P  C  ++ S C   +  Q+M L
Sbjct: 82  FLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFL 141

Query: 143 YSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCI 202
             A+ L+ +G GGIR  +L FGA+Q +   +   +G ++S+F+WY+ +   + MV++T I
Sbjct: 142 AGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKRG-IESFFNWYFFTFTFAQMVSLTLI 200

Query: 203 VYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHI 262
           VY+Q N+ W +G  +PA++ LL  + FF  S  YV+ KA+ S +  + +V+V + K R +
Sbjct: 201 VYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRL 260

Query: 263 K------LSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRAS--NPW 314
           K      L +    +  + + G      +E  R L+K+ I     QD   ++  S  + W
Sbjct: 261 KPVGPNELYNYIASDFKNSKLGH-----TEQFRFLDKSAI---QTQDDKLNKDGSPVDAW 312

Query: 315 SLCTVDQVEELKALIKVIPLW-STGIMIAVTISQSSFPVLQASTMDRHITP-NFEIPSGS 372
            LC++ QVEE+K +I+V+P+W S  +     I Q+++ + Q+   DR + P +F+IP+GS
Sbjct: 313 KLCSMQQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGS 372

Query: 373 FGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETV 432
           + +F ++ + ++I  YDR+L P   K  G+   +   QR+G GL     SM   AI E  
Sbjct: 373 YTVFLMLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQY 432

Query: 433 RRNIAINE---GISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSS 489
           RR +A+ +   G++    A+  MS MW++P  VL G+A A   +GQ+EFYY + P +M S
Sbjct: 433 RRKVALTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEFYYKQFPENMRS 492

Query: 490 IASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMAS 549
            A +L+  G+ +AS +++F+++AV + T+      W+P ++NKGR +Y+Y+L+AG+   +
Sbjct: 493 FAGSLYYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRLEYFYFLVAGMMTLN 552

Query: 550 FIYFLACCKAY 560
             YFL     Y
Sbjct: 553 LAYFLLVSHWY 563

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  349 bits (895), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 205/550 (37%), Positives = 307/550 (55%), Gaps = 24/550 (4%)

Query: 18  NKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNF 77
           +K   G  +  PFI+ NE  ER+A  G+  N+I Y   E +    +  + ++IW      
Sbjct: 49  SKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYI 108

Query: 78  LPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSD-CESATW 136
            P+IGA +ADS  GRY  I      Y +G+ LL L+  L   +P AC  + +  C  AT 
Sbjct: 109 TPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSPATT 168

Query: 137 SQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSM 196
            Q  + ++ L L++LG GGI+    +FGA+Q +  D  + +    S+F+W+Y S+   S 
Sbjct: 169 VQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDP-RERVRKASFFNWFYFSINIGSF 227

Query: 197 VAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVAS 256
           ++ T +V++Q+N+GW +GF +P V   +S  SFF+ +P Y   K   S +T + QVLVA+
Sbjct: 228 ISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAA 287

Query: 257 YKNRHIKLSSQTTEEMYHPRK------GSMLLVPSENLRCLNKACIIKHPGQDSTPDRRA 310
           Y+   + L  +    +Y  R+      GS  +  ++  + L+KA +I      S      
Sbjct: 288 YRKLKLNLP-EDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSGA---F 343

Query: 311 SNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFPVLQASTMDRHITPNFEIP 369
           SNPW LCTV QVEE+K LI++ P+W++GI+ +V  SQ S+  V Q  +M+R I  +FEIP
Sbjct: 344 SNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNR-IIRSFEIP 402

Query: 370 SGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAIT 429
             SFG+F  + V++ I  YDR L P   +  G P  L   QRMGIGL  S  S+AA AI 
Sbjct: 403 PASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIV 462

Query: 430 ETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSS 489
           ETVR  +A         +  V MS  W +P ++L G+A  F  IG++EF+Y E P +M S
Sbjct: 463 ETVRLQLA---------QDFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRS 513

Query: 490 IASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMAS 549
           + SAL  L  +V S ++S I+  V   T  GGK+GW+P ++NKG  DY++WLL  L + +
Sbjct: 514 VCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVSLGLVN 573

Query: 550 F-IYFLACCK 558
             +Y L C K
Sbjct: 574 IPVYALICVK 583

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  348 bits (892), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 191/547 (34%), Positives = 301/547 (55%), Gaps = 12/547 (2%)

Query: 18  NKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNF 77
           NKN  G  +   FI+  E  ER+A  G+  N+I YL  + NME  + +  +  W+     
Sbjct: 22  NKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYA 81

Query: 78  LPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWS 137
            P+IGAF+AD+ +GRY  I    + Y+ G+ LL     +S + P        +   AT  
Sbjct: 82  TPLIGAFIADAYLGRYWTIASFVVIYIAGMTLL----TISASVPGLTPTCSGETCHATAG 137

Query: 138 QLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMV 197
           Q  + + AL L++LG GGI+    +FGA+Q +  DE K K +  S+F+W+Y  +   +M+
Sbjct: 138 QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDE-KEKESKSSFFNWFYFVINVGAMI 196

Query: 198 AVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASY 257
           A + +V+IQ N+GW  G GVP V   ++ + FF  S FY   K   S LT ++QV+VAS 
Sbjct: 197 ASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASC 256

Query: 258 KNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRA---SNPW 314
           +   +K+  +    +Y  +     ++ S  L              ++  D +    S+ W
Sbjct: 257 RKSKVKIP-EDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKGAAKSSSW 315

Query: 315 SLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFPVLQASTMDRHITPNFEIPSGSF 373
            LCTV QVEELKALI+++P+W+TGI+ A   SQ  +  VLQ +T+D+H+ PNF+IPS S 
Sbjct: 316 KLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASL 375

Query: 374 GIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVR 433
            +F  ++V+ W   YD+++ P A K  G        QR+GIGL+ S  SM +  I E  R
Sbjct: 376 SLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVAR 435

Query: 434 RNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASA 493
            N      + ++    + M+  W +P + L G A  F  IGQ+EF+Y + P +M S+ SA
Sbjct: 436 LNYVQTHNLYNEE--TIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSA 493

Query: 494 LHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYF 553
           L    ++  + +++F++  V ++T+ GG+ GWI  N+N G  DY++WLLAGL+  +F+ +
Sbjct: 494 LSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVY 553

Query: 554 LACCKAY 560
           L   K Y
Sbjct: 554 LWIAKWY 560

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	581
255550992	578	nitrate transporter, putative [Ricinus c	0.989	0.994	0.603	0.0
224087732	605	predicted protein [Populus trichocarpa]	0.951	0.914	0.600	0.0
224106908	606	predicted protein [Populus trichocarpa]	0.951	0.912	0.596	0.0
224141763	581	predicted protein [Populus trichocarpa]	0.989	0.989	0.596	0.0
356507909	568	PREDICTED: probable peptide transporter	0.963	0.985	0.584	0.0
224141757	568	predicted protein [Populus trichocarpa]	0.969	0.991	0.598	0.0
297743243	622	unnamed protein product [Vitis vinifera]	0.981	0.916	0.563	0.0
225442569	584	PREDICTED: probable peptide transporter	0.977	0.972	0.561	0.0
224141759	564	predicted protein [Populus trichocarpa]	0.969	0.998	0.575	0.0
255549914	612	nitrate transporter, putative [Ricinus c	0.967	0.918	0.544	0.0

>gi|255550992|ref|XP_002516544.1| nitrate transporter, putative [Ricinus communis] gi|223544364|gb|EEF45885.1| nitrate transporter, putative [Ricinus communis]

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/577 (60%), Positives = 437/577 (75%), Gaps = 2/577 (0%)

Query: 1   MGTHSEEKNMITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNME 60
           MGT    +N      LI+ N KGG R LPFI+ N AFE++AS GL PNMILYL  EY +E
Sbjct: 1   MGTGDPSENNTISEALISSNQKGGFRVLPFIVVNMAFEKVASFGLTPNMILYLTREYRIE 60

Query: 61  TTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQ 120
              G N++  W+AATNF PI+GAF+ADS VGR+ MIGFG I  LLG++LLWLT ++ QA+
Sbjct: 61  AAKGANIIFFWSAATNFTPILGAFIADSYVGRFRMIGFGSIASLLGIILLWLTAVIPQAR 120

Query: 121 PPACDQLRSD-CESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGA 179
           P  CDQ  SD C+S T  QL+LLYS+ GL+S+G GGIRSSSLAFGA+QL  G   K  G 
Sbjct: 121 PLPCDQFTSDSCQSPTTLQLLLLYSSFGLLSIGAGGIRSSSLAFGADQLGMGQSLKRAGI 180

Query: 180 LQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQS 239
           L+ + SWYYV V  S++VA+TCIVYIQD +GWKVGFGVP V+  ++ LSFF AS FYV+S
Sbjct: 181 LERFISWYYVLVSVSAVVAMTCIVYIQDAMGWKVGFGVPVVLMAIAVLSFFSASSFYVKS 240

Query: 240 KANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKH 299
           K   S  TG  QVL A+Y NR I  SSQ + + YH RKG+ ++ PSE LR LNKACII++
Sbjct: 241 KPTASSFTGFAQVLAAAYHNRSIPFSSQDSNDGYHNRKGATVVAPSEMLRFLNKACIIEN 300

Query: 300 PGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMD 359
           P +D TPD RASNPWSLCTV+QVEELKALIK+IP+W +G++++V ++QSSFPVLQASTMD
Sbjct: 301 PEEDLTPDGRASNPWSLCTVNQVEELKALIKIIPIWLSGMIMSVNVAQSSFPVLQASTMD 360

Query: 360 RHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFS 419
           RHI   FEIP+GS  +F +I++ +W+  YDR++ P+ASK+RGKP +L LKQRMGIG+L S
Sbjct: 361 RHIISKFEIPAGSMNVFMVISLAIWVSLYDRVIVPLASKLRGKPVRLSLKQRMGIGILLS 420

Query: 420 TASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFY 479
           +ASM A+AI E  RR  AI EG SDDP AVV MS +W+LPY VL GLA  F+ IGQ EFY
Sbjct: 421 SASMLAFAIAEKNRRERAIREGFSDDPNAVVNMSVLWLLPYLVLCGLAETFSAIGQNEFY 480

Query: 480 YSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYY 539
           Y+ELP+SMSSIA+ L  +G+S A+L+ASFIM+ +D  +KRGG+E W+ SNINKG YDYYY
Sbjct: 481 YTELPKSMSSIAATLFDMGLSAANLLASFIMSTIDSFSKRGGEESWVSSNINKGHYDYYY 540

Query: 540 WLLAGLNMASFIYFLACCKAYGPCREEASEALDEKDG 576
           WLLA L++ +F+Y+LAC K YGPCR +   A D+ DG
Sbjct: 541 WLLASLSLLNFVYYLACSKGYGPCRAKEGNAPDD-DG 576

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087732|ref|XP_002335129.1| predicted protein [Populus trichocarpa] gi|222832886|gb|EEE71363.1| predicted protein [Populus trichocarpa]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/578 (60%), Positives = 427/578 (73%), Gaps = 25/578 (4%)

Query: 10  MITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLL 69
           MITEPLL   +PKGG+R L FIIANEA ER+AS GL  NMILYL  EY M+  +G  +L 
Sbjct: 1   MITEPLL--SSPKGGIRALFFIIANEALERLASFGLSTNMILYLTREYGMDAASGAQILF 58

Query: 70  IWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL----------------------GV 107
           +++AA NF+PIIGAFLAD+ VGRYPMIGFGCI  LL                      G+
Sbjct: 59  LYSAAGNFMPIIGAFLADTYVGRYPMIGFGCIASLLTTIYVSGQRIYGSVAILSQTKVGM 118

Query: 108 VLLWLTTILSQAQPPACDQLRSDC-ESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAE 166
           VLLWLTTI+  A+ P+C Q  S+C   AT  QL+ LY  LGLMS+G GGIRS SLAFGA+
Sbjct: 119 VLLWLTTIIPGARVPSCAQFSSNCTNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGAD 178

Query: 167 QLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSA 226
           QL K D  K  G L+S+FSWYYV+  AS  +++TCIVYIQD +GWKVGFGVP V+ +LS 
Sbjct: 179 QLSKRDSLKHAGILESFFSWYYVTSSASVFISMTCIVYIQDTMGWKVGFGVPVVLMILST 238

Query: 227 LSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSE 286
           LSFFLASP YV+ KA  S L G  +VLVAS++ R I+LSS  T+E+YH RKGS L+VPSE
Sbjct: 239 LSFFLASPIYVKPKAKASWLIGFARVLVASFRKRRIELSSLDTDELYHHRKGSALVVPSE 298

Query: 287 NLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTIS 346
            +R LNKAC+IK+P +D  PD RAS+PWSLCTVDQVEELKALIKVIP+WSTG++++V + 
Sbjct: 299 RIRFLNKACVIKNPEEDLMPDGRASDPWSLCTVDQVEELKALIKVIPIWSTGVLVSVNVC 358

Query: 347 QSSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQL 406
           Q+SF +LQASTM+RHIT  FEIP+GSF  F +++  +WI  YDR++ P+ASKI GKP +L
Sbjct: 359 QNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTRL 418

Query: 407 RLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGL 466
            LKQ++GIG+L S ASMA  AI E VRR IAI EGISD P AV  MSAMW+LP++ L G 
Sbjct: 419 GLKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLGF 478

Query: 467 AMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWI 526
           + A N +G  EF+Y+ELP+SMSS+AS L  +G+S ASLVASFI++ V        +E W+
Sbjct: 479 SEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVCGFIGEANQESWV 538

Query: 527 PSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCR 564
            SNINKG YDYYYWLL  L  A+FIY+LAC KAYGPC+
Sbjct: 539 SSNINKGHYDYYYWLLYSLGFANFIYYLACSKAYGPCK 576

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106908|ref|XP_002333609.1| predicted protein [Populus trichocarpa] gi|222837572|gb|EEE75937.1| predicted protein [Populus trichocarpa]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/578 (59%), Positives = 425/578 (73%), Gaps = 25/578 (4%)

Query: 10  MITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLL 69
           MITEPLL   +PKGG+R L FIIANEA ER+AS GL  NMILYL  EY M+  +G  +L 
Sbjct: 1   MITEPLL--SSPKGGIRALFFIIANEALERLASFGLSTNMILYLTREYGMDAASGAQILF 58

Query: 70  IWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL----------------------GV 107
           +++AA NF+PIIGAFLAD+ VGRYPMIGFGCI  LL                      G+
Sbjct: 59  LYSAAGNFMPIIGAFLADTYVGRYPMIGFGCIASLLTTIYVSGQRIYGSVAILSQTKVGM 118

Query: 108 VLLWLTTILSQAQPPACDQLRSDCES-ATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAE 166
           VLLWLTTI+  A  P+C Q  S C + AT  QL+ LY  LGLMS+G GGIRS SLAFGA+
Sbjct: 119 VLLWLTTIIPGATVPSCAQFSSICNNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGAD 178

Query: 167 QLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSA 226
           QL K D  K  G L+S+FSWYYV+  AS  +++TCIVYIQD +GWKVGFGVP V+ +LS 
Sbjct: 179 QLSKRDSLKHAGILESFFSWYYVTSSASVFISMTCIVYIQDTMGWKVGFGVPVVLMILST 238

Query: 227 LSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSE 286
           LSFFLASP YV+ K   S L G  +VLVASY+ R I+LS   T+E+YH RKGS L+VPSE
Sbjct: 239 LSFFLASPIYVKPKVKASWLIGFARVLVASYRKRRIELSWLDTDELYHHRKGSALVVPSE 298

Query: 287 NLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTIS 346
            +R LNKAC+IK+P +D  PD RAS+PW+LCTVDQVEELKALIKVIP+WSTG++++V + 
Sbjct: 299 RIRFLNKACVIKNPEEDLMPDGRASDPWTLCTVDQVEELKALIKVIPIWSTGVLVSVNVC 358

Query: 347 QSSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQL 406
           Q+SF +LQASTM+RHIT  FEIP+GSF  F +++  +WI  YDR++ P+ASKI GKP +L
Sbjct: 359 QNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTRL 418

Query: 407 RLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGL 466
            LKQ++GIG+L S ASMA  AI E VRR IAI EGISD P AV  MSAMW+LP++ L G 
Sbjct: 419 GLKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLGF 478

Query: 467 AMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWI 526
           + A N +G  EF+Y+ELP+SMSS+AS L  +G+S ASLVASFI++ V        +E W+
Sbjct: 479 SEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVRGFIGEANQESWV 538

Query: 527 PSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCR 564
            SNINKG YDYYYWLL+ L  A+FIY+LAC KAYGPC+
Sbjct: 539 SSNINKGHYDYYYWLLSSLGFANFIYYLACSKAYGPCK 576

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141763|ref|XP_002324234.1| predicted protein [Populus trichocarpa] gi|222865668|gb|EEF02799.1| predicted protein [Populus trichocarpa]

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/575 (59%), Positives = 438/575 (76%)

Query: 6   EEKNMITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGT 65
           + K  I EPLL +   KGGLR L FII NEAFER+A+ GL  N+ILYL  EY ++   G 
Sbjct: 6   DHKGKIKEPLLSSSTTKGGLRALIFIIVNEAFERLANYGLSTNLILYLTREYGIDAVNGA 65

Query: 66  NVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACD 125
            +L + +AAT+F P IGAFLAD+ VGRY MIGFGCI  LLGV+LLWLTTI+   +PP C 
Sbjct: 66  QILYLHSAATSFTPFIGAFLADTYVGRYFMIGFGCIACLLGVILLWLTTIIPGTRPPPCV 125

Query: 126 QLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS 185
           Q    CESA+  QL+LLYS+LGLM++G GGIRSSSLAFGAEQL K D  K  G L+S+F 
Sbjct: 126 QFHDSCESASTLQLLLLYSSLGLMAIGAGGIRSSSLAFGAEQLGKRDTLKRAGILESFFR 185

Query: 186 WYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSL 245
           WYY +V  +  +A+TCI+YIQDN+GWKVGFG+P V+ +LS LSFFLASP YV+SKA    
Sbjct: 186 WYYATVSVALFLAMTCILYIQDNMGWKVGFGIPVVLMILSTLSFFLASPIYVKSKAKAGW 245

Query: 246 LTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDST 305
           L G  +VLVAS++NR IKLSSQ T+++YH RKGS LLVPSE LR LNKAC+I++P +D  
Sbjct: 246 LDGFARVLVASFRNRSIKLSSQVTDDVYHHRKGSRLLVPSEKLRFLNKACVIRNPKEDLI 305

Query: 306 PDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRHITPN 365
           PD RASNPWSLCTVD+VEELK+LIKVIP+WSTG+++++ + Q SF VLQASTMDRHIT  
Sbjct: 306 PDGRASNPWSLCTVDEVEELKSLIKVIPIWSTGVLMSINVLQHSFIVLQASTMDRHITSK 365

Query: 366 FEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAA 425
           F++P+GSF  F + + ++WI  YDR+  P+ASKIRGKP +L LKQR+GIG+L S+A+MAA
Sbjct: 366 FQVPAGSFTAFQLFSSVIWIALYDRVAIPLASKIRGKPTRLGLKQRIGIGILSSSAAMAA 425

Query: 426 WAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPR 485
            AI E+VRR  AI EG SDDP +V+ +SA+W+L Y  ++G A AF  IGQ EF+Y+ELP+
Sbjct: 426 LAIIESVRRKTAIKEGFSDDPNSVLHISALWLLLYFFITGFAEAFCGIGQNEFFYTELPK 485

Query: 486 SMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGL 545
           SMSS+AS L  +G+SV++L+AS ++  V    K   +E W+ SNINKG YDYYYWLLAGL
Sbjct: 486 SMSSVASNLFEMGLSVSNLIASLLVTIVRNFFKGNDQESWLSSNINKGHYDYYYWLLAGL 545

Query: 546 NMASFIYFLACCKAYGPCREEASEALDEKDGMEEE 580
           ++A+FIY+ AC KAYGPC+ +   A D  + + +E
Sbjct: 546 SLANFIYYRACSKAYGPCKGQEGNATDGGEALTDE 580

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507909|ref|XP_003522705.1| PREDICTED: probable peptide transporter At1g52190-like [Glycine max]

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/566 (58%), Positives = 425/566 (75%), Gaps = 6/566 (1%)

Query: 5   SEEKNMITEPLLI--NKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETT 62
           SE +++I EPLL   N N KGG RTLPFIIANEAFER+AS+GLMPNMILYL  EY M+T 
Sbjct: 5   SEMESVIEEPLLSKQNSNAKGGFRTLPFIIANEAFERLASLGLMPNMILYLTREYGMQTA 64

Query: 63  AGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPP 122
             TN LL+W+AA+NF P +GA L+DS VGRY MI FG I  LLG+VLLWLTT++  ++P 
Sbjct: 65  GATNFLLLWSAASNFTPFVGAVLSDSYVGRYSMIAFGSIASLLGMVLLWLTTLIPLSKP- 123

Query: 123 ACDQLRSDCE-SATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQ 181
            C+Q  + C  S T   L++L+S+  LMS+G GGIRSSSLAFG +QL K D+N   G  +
Sbjct: 124 LCNQFTNSCNNSPTTIHLLILHSSFALMSIGAGGIRSSSLAFGVDQLSKRDKNA--GIKE 181

Query: 182 SYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKA 241
           SYFSWYY  V  SS++ +T +VYIQDN+GW VGFG+P ++  ++  SFFLASPFYV  + 
Sbjct: 182 SYFSWYYAIVAMSSLIGLTVVVYIQDNMGWAVGFGIPVILMFVATASFFLASPFYVMVEV 241

Query: 242 NTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPG 301
             ++L+GL QVLVASYKNR ++L  +T   +YH  K S LL+P+E LR LNKAC+I++  
Sbjct: 242 KRNMLSGLAQVLVASYKNRLLQLPQETENGIYHLEKDSDLLMPTEKLRFLNKACLIRNSL 301

Query: 302 QDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRH 361
           QD TP+ RA NPW+LCTVDQVEELKALIK++P+WSTGIM+ V ISQ S  VL+AS+MDRH
Sbjct: 302 QDLTPEGRALNPWNLCTVDQVEELKALIKIVPIWSTGIMMGVNISQGSLLVLEASSMDRH 361

Query: 362 ITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTA 421
           IT NFEIPSGSF  F I++++LW+  YDRIL P+ASKI+G P  +  KQ+MGIGLL    
Sbjct: 362 ITSNFEIPSGSFVTFMIVSLVLWVIIYDRILVPVASKIKGSPACIGAKQKMGIGLLTGCI 421

Query: 422 SMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYS 481
           ++A+ A+ E +RR IAI +G  D P+AVV MSA+W+LP  +L+GLA A  ++GQ EF+ +
Sbjct: 422 AIASLAVVEDIRRKIAIEKGYEDQPQAVVNMSALWLLPRQILNGLAEALGVVGQNEFFLT 481

Query: 482 ELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWL 541
           ELP+SMSS+AS L+GLG SVA+LVASFI++ VD +T  GG E W+ SNINKG YDYYY L
Sbjct: 482 ELPQSMSSLASTLNGLGSSVANLVASFILSVVDNVTGGGGHESWLSSNINKGHYDYYYTL 541

Query: 542 LAGLNMASFIYFLACCKAYGPCREEA 567
           +  L   +F+YFL C K+YGPC+   
Sbjct: 542 ICALCFVNFVYFLYCSKSYGPCKNRG 567

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141757|ref|XP_002324231.1| predicted protein [Populus trichocarpa] gi|222865665|gb|EEF02796.1| predicted protein [Populus trichocarpa]

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/566 (59%), Positives = 428/566 (75%), Gaps = 3/566 (0%)

Query: 1   MGTHSEEKNMITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNME 60
           M   SE   MITEPLL N+  KGG+RTLPFI+ANEAFE +A+ GL PN+ILYL  EY ++
Sbjct: 1   MDCPSEHGQMITEPLLSNR--KGGIRTLPFILANEAFESLANYGLFPNLILYLTREYRID 58

Query: 61  TTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQ 120
              G +VL + ++A NF PI+GAFLAD+ VGRY MIGFGC+  LLG+VLLWLTT   +A+
Sbjct: 59  AAKGAHVLFLLSSAINFTPILGAFLADTYVGRYRMIGFGCMASLLGMVLLWLTT-FPEAR 117

Query: 121 PPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGAL 180
           PP C Q   DC+SAT  QL+LLY+A   +++G GGIRSSSLAFGA+QL   +  +     
Sbjct: 118 PPPCVQFSYDCKSATTLQLLLLYTAFCFLAIGAGGIRSSSLAFGADQLGTSNSLEHARIR 177

Query: 181 QSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSK 240
           +S+FSWYY  V AS  + +T +VYIQDN+GW VGFGVP V+ +LS+LSFF+ASP YV+SK
Sbjct: 178 ESFFSWYYGIVAASVFLGMTFVVYIQDNIGWMVGFGVPVVLMILSSLSFFVASPSYVKSK 237

Query: 241 ANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHP 300
              S +TGL QV+V S +NR IKLSSQ T+++ +   GSMLLVPSE LR LNKACII++P
Sbjct: 238 PKASWITGLAQVVVGSIRNRRIKLSSQATDKVDYHTTGSMLLVPSEKLRFLNKACIIRNP 297

Query: 301 GQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDR 360
            +D TPD +AS+PWSLCTVDQVE+LKALIKVIP+WS G++ +V +SQ SF VLQASTM+R
Sbjct: 298 QEDLTPDGKASDPWSLCTVDQVEDLKALIKVIPIWSAGMLKSVNVSQGSFLVLQASTMNR 357

Query: 361 HITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFST 420
           HIT  FE+P+ SF    ++ +  W+  YDRI+ P+ SK+ GK   L LKQRMGIG+L ST
Sbjct: 358 HITSKFEVPAASFPSIVVLVITTWVVLYDRIIIPLVSKVSGKIVCLNLKQRMGIGILLST 417

Query: 421 ASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYY 480
            SMAA AI E+ RR  AI EG  D+P A + +SAMW+LPY VLSGLA AFN IGQ EF+Y
Sbjct: 418 ISMAALAIAESFRRATAIKEGFPDNPNAELHISAMWLLPYFVLSGLAEAFNAIGQNEFFY 477

Query: 481 SELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYW 540
           +ELP+SMSS+AS L GLG+S ASLV+SFI++AV + TK   +E W+ SNINKG YDYYYW
Sbjct: 478 TELPKSMSSVASTLQGLGLSAASLVSSFIVSAVRDFTKGEAQESWVSSNINKGHYDYYYW 537

Query: 541 LLAGLNMASFIYFLACCKAYGPCREE 566
           +L  L++ +FIY+L C K YGPCR+E
Sbjct: 538 ILTILSLVNFIYYLVCSKTYGPCRQE 563

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743243|emb|CBI36110.3| unnamed protein product [Vitis vinifera]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/577 (56%), Positives = 433/577 (75%), Gaps = 7/577 (1%)

Query: 4   HSEEKNMITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTA 63
           +SE++ M       ++  KGGL T+PFIIANEAFER+AS GL+PNMILYL  +Y++    
Sbjct: 6   NSEQRKM-------SQRAKGGLITMPFIIANEAFERVASYGLLPNMILYLIQDYHLGVAK 58

Query: 64  GTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPA 123
           GTN+L +W+AATNFLP++GAFL+DS +GR+  IG G IT LLG++LLWLT ++ + +PP 
Sbjct: 59  GTNILFLWSAATNFLPVVGAFLSDSYLGRFLTIGLGSITSLLGMILLWLTAMIPKTKPPH 118

Query: 124 CDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY 183
           CD L   C++ T +Q +LLYS+  LMS+G GG+R  SLAFGA+QL+K D  K++  L+S+
Sbjct: 119 CDLLTQSCKAPTAAQFILLYSSFALMSIGAGGVRPCSLAFGADQLDKRDNPKNERVLESF 178

Query: 184 FSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANT 243
           FSWYY S   S ++A+T IVYIQ +LGW+VGFGVPA++   +AL FFLASPFY++ KA+ 
Sbjct: 179 FSWYYASAALSVVIALTGIVYIQVHLGWRVGFGVPAILMFFAALLFFLASPFYIKQKASR 238

Query: 244 SLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQD 303
           SLLTG +QVLV +YKNR +    + T+  YH  K S L+VP++ LR LNKACII+ P +D
Sbjct: 239 SLLTGFVQVLVVAYKNRKLAFPPRNTDGWYHYSKDSKLVVPTDRLRFLNKACIIRSPERD 298

Query: 304 STPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRHIT 363
              D  ASNPWSLCTVDQVEELKALIKVIP+WSTGIM+++  S SSFPVLQA++MDRH+ 
Sbjct: 299 INSDGLASNPWSLCTVDQVEELKALIKVIPMWSTGIMMSINTSNSSFPVLQANSMDRHVF 358

Query: 364 PNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASM 423
            +F+IP+GS+ +F +I + LW+  YDR++ P+ASK+RGK  +L +KQRMGIGL  S   M
Sbjct: 359 SSFQIPAGSYAMFLVIVLFLWVALYDRVILPLASKVRGKRVRLGVKQRMGIGLFLSCLGM 418

Query: 424 AAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSEL 483
              AI E VRR  AI +G+ ++P+ +V MSAMW++P + L GLA AFN IGQ EFYYSE 
Sbjct: 419 VVAAIVENVRRRKAIRQGLLNNPQTLVGMSAMWLVPQYCLYGLAEAFNAIGQTEFYYSEF 478

Query: 484 PRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLA 543
           P+SMSSIA+AL GLGM+VA+L+AS I++AV+ +T RGGKE W+ +NINKG YD YYWLLA
Sbjct: 479 PKSMSSIAAALFGLGMAVANLLASVILSAVNHLTSRGGKESWVSNNINKGHYDNYYWLLA 538

Query: 544 GLNMASFIYFLACCKAYGPCREEASEALDEKDGMEEE 580
            ++  + +Y+L C   YGPC E+ ++  DE   ME E
Sbjct: 539 IMSAINLLYYLVCSYFYGPCVEQGTKVSDEGKSMEGE 575

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442569|ref|XP_002279092.1| PREDICTED: probable peptide transporter At1g52190-like [Vitis vinifera]

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/577 (56%), Positives = 436/577 (75%), Gaps = 9/577 (1%)

Query: 4   HSEEKNMITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTA 63
           +SE++ M       ++  KGGL T+PFIIANEAFER+AS GL+PNMILYL  +Y++    
Sbjct: 6   NSEQRKM-------SQRAKGGLITMPFIIANEAFERVASYGLLPNMILYLIQDYHLGVAK 58

Query: 64  GTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPA 123
           GTN+L +W+AATNFLP++GAFL+DS +GR+  IG G IT LLG++LLWLT ++ + +PP 
Sbjct: 59  GTNILFLWSAATNFLPVVGAFLSDSYLGRFLTIGLGSITSLLGMILLWLTAMIPKTKPPH 118

Query: 124 CDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY 183
           CD L   C++ T +Q +LLYS+  LMS+G GG+R  SLAFGA+QL+K D  K++  L+S+
Sbjct: 119 CDLLTQSCKAPTAAQFILLYSSFALMSIGAGGVRPCSLAFGADQLDKRDNPKNERVLESF 178

Query: 184 FSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANT 243
           FSWYY S   S ++A+T IVYIQ +LGW+VGFGVPA++   +AL FFLASPFY++ KA+ 
Sbjct: 179 FSWYYASAALSVVIALTGIVYIQVHLGWRVGFGVPAILMFFAALLFFLASPFYIKQKASR 238

Query: 244 SLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQD 303
           SLLTG +QVLV +YKNR +    + T+  YH  K S L+VP++ LR LNKACII+ P +D
Sbjct: 239 SLLTGFVQVLVVAYKNRKLAFPPRNTDGWYHYSKDSKLVVPTDRLRFLNKACIIRSPERD 298

Query: 304 STPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRHIT 363
              D  ASNPWSLCTVDQVEELKALIKVIP+WSTGIM+++  S SSFPVLQA++MDRH+ 
Sbjct: 299 INSDGLASNPWSLCTVDQVEELKALIKVIPMWSTGIMMSINTSNSSFPVLQANSMDRHVF 358

Query: 364 PNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASM 423
            +F+IP+GS+ +F +I + LW+  YDR++ P+ASK+RGK  +L +KQRMGIGL  S   M
Sbjct: 359 SSFQIPAGSYAMFLVIVLFLWVALYDRVILPLASKVRGKRVRLGVKQRMGIGLFLSCLGM 418

Query: 424 AAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSEL 483
              AI E VRR  AI +G+ ++P+ +V MSAMW++P + L GLA AFN IGQ EFYYSE 
Sbjct: 419 VVAAIVENVRRRKAIRQGLLNNPQTLVGMSAMWLVPQYCLYGLAEAFNAIGQTEFYYSEF 478

Query: 484 PRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLA 543
           P+SMSSIA+AL GLGM+VA+L+AS I++AV+ +T RGGKE W+ +NINKG YD YYWLLA
Sbjct: 479 PKSMSSIAAALFGLGMAVANLLASVILSAVNHLTSRGGKESWVSNNINKGHYDNYYWLLA 538

Query: 544 GLNMASFIYFLACCKAYGPCREEASEALDEKDGMEEE 580
            ++  + +Y+L C   YGPC E+ ++  DE +G+++E
Sbjct: 539 IMSAINLLYYLVCSYFYGPCVEQGTK--DEVEGLKDE 573

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141759|ref|XP_002324232.1| predicted protein [Populus trichocarpa] gi|222865666|gb|EEF02797.1| predicted protein [Populus trichocarpa]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/566 (57%), Positives = 420/566 (74%), Gaps = 3/566 (0%)

Query: 10  MITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLL 69
           MITEPLL   N KGG+RT+PFI+ANEAFER+AS GL  NMI+YL  EY M+      +L 
Sbjct: 1   MITEPLL--SNGKGGIRTIPFILANEAFERLASFGLSTNMIMYLTREYGMDAAQAAQLLF 58

Query: 70  IWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRS 129
           ++++ATNF PI+ A LADS VGRY MIGFGC+  LLG+VLLWLTT   +A+ P C     
Sbjct: 59  LFSSATNFTPILXAVLADSYVGRYRMIGFGCMASLLGMVLLWLTT-FPEARQPLCVHFSH 117

Query: 130 DCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYV 189
            C S +  QL+ LY+A G M++G GGIRSSSLAFGA+QL      +     +S+F WYYV
Sbjct: 118 SCNSRSTLQLVHLYTAFGFMAIGAGGIRSSSLAFGADQLSITHNLQRARIRESFFRWYYV 177

Query: 190 SVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGL 249
           +V AS  VA+TC+VYIQ+N+GW VGFGVP V+ +LSALSF LASPFYV+SK   S +TGL
Sbjct: 178 TVTASVFVAMTCVVYIQENMGWMVGFGVPVVLMILSALSFSLASPFYVKSKPKASWITGL 237

Query: 250 IQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRR 309
            QV+VAS++NR ++LS+Q T E+ +   GS+L VPS+ LR  NKACI+ +P  D TPD  
Sbjct: 238 AQVVVASFRNRSVELSTQATVEVRYHTTGSILPVPSKRLRFFNKACIVGNPQVDVTPDGN 297

Query: 310 ASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRHITPNFEIP 369
           A +PWSLCTVDQVE+LK LIKVIP+WS+G+++ V +SQ SF VLQ STMDRHIT  FEIP
Sbjct: 298 ALDPWSLCTVDQVEDLKTLIKVIPIWSSGMLMFVNVSQGSFIVLQVSTMDRHITSKFEIP 357

Query: 370 SGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAIT 429
           + +F  F ++ ++LW+  YDRI+ P+ SKI+G+P  L LK+RMGIG+L ST SMAA AI 
Sbjct: 358 AATFLSFAVLVIVLWVALYDRIIIPLVSKIKGQPVCLGLKKRMGIGILLSTTSMAALAIA 417

Query: 430 ETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSS 489
           E+VRR  AI EG SD P A + +S    LP+  LSG+A AF  IGQ EF+Y+ELP+SMSS
Sbjct: 418 ESVRRETAIKEGFSDRPDAGLHISTFLFLPFLALSGVAEAFTPIGQNEFFYTELPKSMSS 477

Query: 490 IASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMAS 549
           +AS L+G+GMSVASLV+SFI+ AV ++T   G+E W+ SNINKG YDYYYWLLA L++ +
Sbjct: 478 VASTLNGIGMSVASLVSSFIVRAVRDLTTVEGQESWVSSNINKGHYDYYYWLLASLSLVN 537

Query: 550 FIYFLACCKAYGPCREEASEALDEKD 575
           F+Y+LAC K+YGP  EE  + + ++ 
Sbjct: 538 FLYYLACSKSYGPSMEEQRDIVADES 563

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549914|ref|XP_002516008.1| nitrate transporter, putative [Ricinus communis] gi|223544913|gb|EEF46428.1| nitrate transporter, putative [Ricinus communis]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/562 (54%), Positives = 413/562 (73%)

Query: 19  KNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFL 78
           K+ KGGL T+PFIIANEAFE+++S GL+PNMI YL  +Y +    G N++ +W AATNF+
Sbjct: 26  KSRKGGLITMPFIIANEAFEKVSSYGLLPNMIFYLMKDYGLGVAKGANIIFLWNAATNFM 85

Query: 79  PIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQ 138
           P++GAF++DS +GRY  IG G I  LLG VLLWLTT++ Q++PP CD +  +C+S T  Q
Sbjct: 86  PLLGAFISDSYLGRYLTIGLGSIFSLLGTVLLWLTTMIPQSKPPLCDLMTQNCKSPTAGQ 145

Query: 139 LMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVA 198
           + +L S++  +S+G GGIR  SLAFGA+QL+     K++  L+SYF WYY S   S ++A
Sbjct: 146 ITMLLSSMAFISIGAGGIRPCSLAFGADQLDNKSNPKNERILESYFGWYYASTAISVLIA 205

Query: 199 VTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYK 258
           +T IVYIQD+ GW+VGFGVPA++  LSA  FF+ASP Y++ KA+ SLL G  QVLV +YK
Sbjct: 206 LTGIVYIQDHHGWRVGFGVPAILVFLSAFLFFIASPLYLKQKASKSLLAGFAQVLVVAYK 265

Query: 259 NRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCT 318
           NR I      ++  YH RK S  + P+EN+R LNKACII++  QD  PD  ASNPWSLCT
Sbjct: 266 NRKIPFPPTNSDSKYHRRKNSEYITPTENIRFLNKACIIRNAEQDLAPDGSASNPWSLCT 325

Query: 319 VDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRHITPNFEIPSGSFGIFTI 378
           ++QVEELKALI+VIP+WSTGIM+++ +SQ SF VLQAS+MDRH++  F++P+GSF  F +
Sbjct: 326 IEQVEELKALIRVIPIWSTGIMMSINVSQGSFQVLQASSMDRHLSSKFQVPAGSFATFVV 385

Query: 379 ITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAI 438
           I++ +WI  YDR + P+A+KI+GKP +L +K RMGIGL  S   M    I E VRR  AI
Sbjct: 386 ISMAIWIVLYDRAILPLATKIKGKPVRLGVKLRMGIGLFLSCMGMVVAGIVENVRRRKAI 445

Query: 439 NEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLG 498
           +EG  ++P AVV+MSA W+ P + L+G A A N IGQ EFYY+E P+SMSSIA AL GLG
Sbjct: 446 HEGYLNNPNAVVQMSAFWLAPQYCLNGFAEALNAIGQTEFYYTEFPKSMSSIAGALFGLG 505

Query: 499 MSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCK 558
           M+VA+L+A+ I++ V+ IT +GGK GW+PSNIN+G YD YYWLLA ++  + +YFL C  
Sbjct: 506 MAVANLLATVILSLVNNITSKGGKVGWVPSNINQGHYDNYYWLLAIMSAVNLLYFLICSW 565

Query: 559 AYGPCREEASEALDEKDGMEEE 580
            YGPC+E+ ++  DE +G + E
Sbjct: 566 GYGPCKEQITKVSDEGNGFKHE 587

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	581
TAIR|locus:2037452	607	AT1G52190 [Arabidopsis thalian	0.963	0.922	0.480	4.2e-143
TAIR|locus:2093442	591	AT3G16180 [Arabidopsis thalian	0.984	0.967	0.463	1.9e-140
TAIR|locus:2144281	481	AT5G11570 [Arabidopsis thalian	0.425	0.513	0.484	1.1e-105
TAIR|locus:2196800	620	NRT1.7 "nitrate transporter 1.	0.924	0.866	0.350	3.4e-93
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.975	0.951	0.326	8.6e-88
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.939	0.957	0.341	1e-84
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.905	0.891	0.352	4.4e-84
TAIR|locus:2205719	576	NRT1.6 "nitrate transporter 1.	0.898	0.906	0.327	6.4e-83
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.920	0.938	0.330	6.4e-83
TAIR|locus:2172249	616	GTR2 "AT5G62680" [Arabidopsis	0.920	0.868	0.313	1.7e-82

TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)]

 Score = 1399 (497.5 bits), Expect = 4.2e-143, P = 4.2e-143
 Identities = 273/568 (48%), Positives = 378/568 (66%)

Query:    19 KNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFL 78
             K  KGG+ T+PFIIANEAFE++AS GL+PNMI+YL  +Y      GTNVL +W+AA+NF 
Sbjct:    19 KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78

Query:    79 PIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLR--SDCESATW 136
             P++GAFL+DS +GR+  I    ++  LG+VLLWLT +L Q +P  CD     S C S+T 
Sbjct:    79 PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTA 138

Query:   137 SQXXXXXXXXXXXXXXXXXXXXXXXAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSM 196
             SQ                       AFGA+QL+  +  K++  L+S+F WYY S   + +
Sbjct:   139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVL 198

Query:   197 VAVTCIVYIQDNLGWKVGFGVPAVIXXXXXXXXXXXXPFYVQSKANTSLLTGLIQVLVAS 256
             +A T IVYIQ++LGWK+GFGVPAV+            P YV      SL TGL Q +VA+
Sbjct:   199 IAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAA 258

Query:   257 YKNRHIKLSSQTTE-EMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWS 315
             YK R + L       + Y+  K S +  PS+ LR LNKAC+I +  ++   D  A NPW 
Sbjct:   259 YKKRKLSLPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKACLISNREEEIGSDGFALNPWR 318

Query:   316 LCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRHIT---PNFEIPSGS 372
             LCT D+VEELKALIKVIP+WSTGIM+++  SQSSF +LQA++MDR ++    +F++P+GS
Sbjct:   319 LCTTDKVEELKALIKVIPIWSTGIMMSINTSQSSFQLLQATSMDRRLSRHGSSFQVPAGS 378

Query:   373 FGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETV 432
             FG+FTII + LW+  YDR + P+ASKIRG+P +L +K RMG+GL  S  +MA  A+ E+ 
Sbjct:   379 FGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSFLAMAISAMVESF 438

Query:   433 RRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIAS 492
             RR  AI++G +++  AVV +SAMW++P +VL GLA A   IGQ EF+Y+E P+SMSSIA+
Sbjct:   439 RRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQTEFFYTEFPKSMSSIAA 498

Query:   493 ALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIY 552
             +L GLGM+VASL+AS ++NAV+E+T R GKE W+  NINKG Y+YYYW+LA ++  + IY
Sbjct:   499 SLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYYYWVLAIMSFINVIY 558

Query:   553 FLACCKAYGPCREEASEALDEKDGMEEE 580
             ++ C  +YGP  ++        +G+ EE
Sbjct:   559 YVICSWSYGPLVDQVRNG--RVNGVREE 584

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)]

 Score = 1374 (488.7 bits), Expect = 1.9e-140, P = 1.9e-140
 Identities = 269/580 (46%), Positives = 380/580 (65%)

Query:     5 SEEKNMITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAG 64
             +E K  + +P+   +  KGGL T+PFIIANE FE++AS GL+ NMILYL  +Y +    G
Sbjct:     8 TESKETLQQPIT-RRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKG 66

Query:    65 TNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPAC 124
               VL +W AATNF+P++GAFL+DS +GR+  I    ++ LLG+V+LWLT +L Q +P  C
Sbjct:    67 QTVLFMWVAATNFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPC 126

Query:   125 DQLR-SDCESATWSQXXXXXXXXXXXXXXXXXXXXXXXAFGAEQLEKGDENKSKGALQSY 183
                  ++C SAT SQ                       AFGA+QL+  +  K++  L+S+
Sbjct:   127 VATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESF 186

Query:   184 FSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVIXXXXXXXXXXXXPFYVQSKANT 243
             F WYY S   + ++A T IVYIQD+LGWK+GFG+PA++            P YV+   + 
Sbjct:   187 FGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSK 246

Query:   244 SLLTGLIQVLVASYKNRHIKLSSQ-TTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQ 302
             SL TGL QV+ A+Y  R++ L     + + Y+  K S L  PS+ LR LNKAC I +  +
Sbjct:   247 SLFTGLAQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELKAPSDKLRFLNKACAISNRDE 306

Query:   303 DSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQSSFPVLQASTMDRHI 362
             D   D  A N W LCT DQVE+LKAL+KVIP+WSTGIM+++ +SQ+SF +LQA +MDR +
Sbjct:   307 DLGSDGLALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQNSFQLLQAKSMDRRL 366

Query:   363 TPN--FEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFST 420
             + N  F+IP+GSFG+FTII +I W+  YDR + P+ASKIRG+P ++ +K RMG+GL  S 
Sbjct:   367 SSNSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFISF 426

Query:   421 ASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYY 480
              +MA  A  E  RR  AI++G+++D  + V +SAMW++P +VL GLA A   IGQ EF+Y
Sbjct:   427 LAMAVSATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEFFY 486

Query:   481 SELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYW 540
             +E P+SMSSIA++L GLGM+VA+++AS I+NAV   +K+G    WI  NINKG YDYYYW
Sbjct:   487 TEFPKSMSSIAASLFGLGMAVANILASVILNAVKNSSKQGNVS-WIEDNINKGHYDYYYW 545

Query:   541 LLAGLNMASFIYFLACCKAYGPCREEASEALDEKDGMEEE 580
             +LA L+  + IY++ C  +YGP  ++     D+ +GM +E
Sbjct:   546 VLAILSFVNVIYYVVCSWSYGPTVDQVRN--DKVNGMRKE 583

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2144281 AT5G11570 [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 1.1e-105, Sum P(2) = 1.1e-105
 Identities = 126/260 (48%), Positives = 173/260 (66%)

Query:   306 PDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIA-VTISQSSFPVLQASTMDRH-IT 363
             P R + NPW LC V QVE+LK+LI VIP+WSTGI+++ VT  Q SF VLQA TMDRH   
Sbjct:   231 PTRNSRNPWKLCRVQQVEDLKSLINVIPIWSTGIILSLVTACQVSFIVLQAKTMDRHTFI 290

Query:   364 PNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASM 423
               FEIP GS+GIF +I+ +L++G YD ++ P+ S    +P +L +  RM  G + S   +
Sbjct:   291 QGFEIPPGSYGIFLVISFLLFLGLYDLVIVPLLSWALREPFRLGVMVRMWAGYVISVLCI 350

Query:   424 AAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSEL 483
             +A A TE  RR  A +E       +  K+SAMW+LPY +L G+A A N I Q EF+YSEL
Sbjct:   351 SALAATEYARRKTARDE-------SGTKLSAMWLLPYMILGGIAEALNTIAQNEFFYSEL 403

Query:   484 PRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLA 543
             P++MSS+A+ L  L M+ ASL++S+I+  VD +T  G    WI  NI++G  DYYYWLL 
Sbjct:   404 PKTMSSVATTLSSLNMAAASLISSWIITIVD-VTTYGS---WITENIDEGHLDYYYWLLV 459

Query:   544 GLNMASFIYFLACCKAYGPC 563
             GL++ + +YF+ C K+YG C
Sbjct:   460 GLSLLNVLYFVWCKKSYGKC 479

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 193/551 (35%), Positives = 306/551 (55%)

Query:    17 INKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATN 76
             + K P GG R + FI+ NE  ER+ S+GL+ N ++YL   +++E     NV+ IW+  TN
Sbjct:    48 VEKKP-GGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTN 106

Query:    77 FLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACD-QLRSDCESAT 135
               P++GA+++D+ VGR+  I F     LLG++ + LT    Q  P +C+ Q    C    
Sbjct:   107 LTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPN 166

Query:   136 WSQXXXXXXXXXXXXXXXXXXXXXXXAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASS 195
               Q                        FG +Q ++  E   KG + S+F+WYY++     
Sbjct:   167 KLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKG-VASFFNWYYMTFTVVL 225

Query:   196 MVAVTCIVYIQDNLGWKVGFGVPAVIXXXXXXXXXXXXPFYVQSKANTSLLTGLIQVLVA 255
             ++  T +VYIQD + W +GF +P  +              YV  K   S+ +G+ QV+VA
Sbjct:   226 IITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVA 285

Query:   256 SYKNRHIKLSSQT--TEEMYHPR-KGSML--LVPSENLRCLNKACIIKHPGQDSTPDRRA 310
             + K R +KL ++   T   Y P  K S+L  L  S   RCL+KA ++   G D TP+   
Sbjct:   286 ARKKRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVIE-G-DLTPEGPP 343

Query:   311 SNPWSLCTVDQVEELKALIKVIPLWSTGIM-IAVTISQSSFPVLQASTMDRHITPNFEIP 369
             ++ W LC+V +VEE+K LI+++P+WS GI+ +A   +Q +F V QA  MDR++ P FEIP
Sbjct:   344 ADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFEIP 403

Query:   370 SGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAIT 429
             +GS  + +++T+ +++ FYDR+  P   +I G    + L QR+G G++F+  SM    I 
Sbjct:   404 AGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAGIV 463

Query:   430 ETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSS 489
             E +RR  +IN G   DP  +  MS  W+ P  +L GL  AFN+IGQIEF+ S+ P  M S
Sbjct:   464 ERMRRIRSINAG---DPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRS 520

Query:   490 IASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMAS 549
             IA++L  L  + +S ++SF++  V + +    +  W+  N+N G+ DY+Y+L+A L + +
Sbjct:   521 IANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIAVLGVVN 580

Query:   550 FIYFLACCKAY 560
              +YF  C + Y
Sbjct:   581 LVYFWYCARGY 591

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015706 "nitrate transport" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 190/582 (32%), Positives = 316/582 (54%)

Query:     6 EEKNMITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGT 65
             EEK +   P   N+ PKGGL T+PFI ANE  E++A +G   NMI YL  + ++  T   
Sbjct:    12 EEKQLHGRP---NR-PKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAA 67

Query:    66 NVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACD 125
             N L  +   ++  P++GAF+ADS  GR+  I F  I Y +G+ LL ++ I+   +PP C 
Sbjct:    68 NTLTNFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCK 127

Query:   126 QLRSDCESATWSQXXXXXXXXXXXXXXXXXXXXXXXAFGAEQLEKGDENKSKGALQSYFS 185
                  C  A  +Q                       AFGA+Q ++ D N++     +YF+
Sbjct:   128 G-EEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTW-NYFN 185

Query:   186 WYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVIXXXXXXXXXXXXPFYVQSKANTSL 245
             WYY  + A+ ++AVT +V+IQDN+GW +G G+P V               Y       S 
Sbjct:   186 WYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSP 245

Query:   246 LTGLIQVLVASYKNRHIKLSSQTT-----EEMYHPRKGSMLLVPSENLRCLNKACIIKHP 300
              T LIQV VA+++ R +++ S  +     +E+  P      L  ++++  L+KA I+   
Sbjct:   246 FTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTE- 304

Query:   301 GQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQS-SFPVLQASTMD 359
              +D+    +  N W L TV +VEELK++I++ P+ ++GI++    +Q  +F + QA TM+
Sbjct:   305 -EDNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMN 363

Query:   360 RHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFS 419
             RH+T +F+IP+GS  +FT + ++  I FYDR+   +A K  G    +    RMGIG + S
Sbjct:   364 RHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVIS 423

Query:   420 TASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFY 479
               +       E  R+++AI  G+ D P  +V +S +W++P + L G+A AF  IG +EF+
Sbjct:   424 IIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFF 483

Query:   480 YSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIP-SNINKGRYDYY 538
             Y + P SM S A+AL  + +S+ + V++ ++  V + + +     W+P +N+N+GR +Y+
Sbjct:   484 YDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYF 543

Query:   539 YWLLAGLNMASFIYFLACCKAYGPCREEASEALDEKDGMEEE 580
             YWL+  L   + +Y+L C K Y     +   + ++   ++EE
Sbjct:   544 YWLITVLQAVNLVYYLWCAKIYTYKPVQVHHSKEDSSPVKEE 585

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 194/568 (34%), Positives = 300/568 (52%)

Query:     6 EEKNMITEP--LLINKNPK-----GGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYN 58
             EEK++ T+   + I+KNP      G  +   FI+ NE  ER+A  G+  N++ YL    N
Sbjct:     2 EEKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLN 61

Query:    59 METTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQ 118
                    N +  W+      P+IGAF+AD+ +GRY  I      Y+ G+ LL L+  +  
Sbjct:    62 QGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPG 121

Query:   119 AQPPACDQLRSDCESATWSQXXXXXXXXXXXXXXXXXXXXXXXAFGAEQLEKGDENKSKG 178
              +P  C+     C   + SQ                       +FGA+Q ++ DEN+ K 
Sbjct:   122 LKPGNCNA--DTCHPNS-SQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENE-KI 177

Query:   179 ALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVIXXXXXXXXXXXXPFYVQ 238
                S+F+W+Y S+   +++A T +V+IQ N+GW  GFGVP V              FY  
Sbjct:   178 KKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRL 237

Query:   239 SKANTSLLTGLIQVLVASYKNRHIKLSSQT-----TEEMYHPRKGSMLLVPSENLRCLNK 293
              +   S LT + QV+VA+++   +K+         T +     KGS  LV ++NL+  +K
Sbjct:   238 QRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDK 297

Query:   294 ACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFPV 352
             A +      DS  D    NPW LC+V QVEELK++I ++P+W+TGI+ A   SQ S+  V
Sbjct:   298 AAVESQ--SDSIKDGEV-NPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFV 354

Query:   353 LQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRM 412
             LQ +TMD+H+  NFEIPS S  +F  ++V+ W   YD+ + P+A K           QRM
Sbjct:   355 LQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRM 414

Query:   413 GIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNM 472
             GIGL+ S  +M    + E VR +        D  +  + MS  W +P ++L G A  F  
Sbjct:   415 GIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQ--IHMSIFWQIPQYLLIGCAEVFTF 472

Query:   473 IGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINK 532
             IGQ+EF+Y + P +M S+ SAL    +++ + +++ ++  V +ITK+ GK GWIP N+N+
Sbjct:   473 IGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNR 532

Query:   533 GRYDYYYWLLAGLNMASFIYFLACCKAY 560
             G  DY+++LLA L+  +F+ +L   K Y
Sbjct:   533 GHLDYFFYLLATLSFLNFLVYLWISKRY 560

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 194/550 (35%), Positives = 289/550 (52%)

Query:    18 NKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNF 77
             +K   G  +  PFI+ NE  ER+A  G+  N+I Y   E +    +  + ++IW      
Sbjct:    49 SKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYI 108

Query:    78 LPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSD-CESATW 136
              P+IGA +ADS  GRY  I      Y +G+ LL L+  L   +P AC  + +  C  AT 
Sbjct:   109 TPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSPATT 168

Query:   137 SQXXXXXXXXXXXXXXXXXXXXXXXAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSM 196
              Q                       +FGA+Q +  D  + +    S+F+W+Y S+   S 
Sbjct:   169 VQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDP-RERVRKASFFNWFYFSINIGSF 227

Query:   197 VAVTCIVYIQDNLGWKVGFGVPAVIXXXXXXXXXXXXPFYVQSKANTSLLTGLIQVLVAS 256
             ++ T +V++Q+N+GW +GF +P V             P Y   K   S +T + QVLVA+
Sbjct:   228 ISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAA 287

Query:   257 YKNRHIKLSSQTTEEMYHPR-KGSML-----LVPSENLRCLNKACIIKHPGQDSTPDRRA 310
             Y+   + L    +  +Y  R K SM+     +  ++  + L+KA +I    +  +     
Sbjct:   288 YRKLKLNLPEDISF-LYETREKNSMIAGSRKIQHTDGYKFLDKAAVIS---EYESKSGAF 343

Query:   311 SNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFPVLQASTMDRHITPNFEIP 369
             SNPW LCTV QVEE+K LI++ P+W++GI+ +V  SQ S+  V Q  +M+R I  +FEIP
Sbjct:   344 SNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNR-IIRSFEIP 402

Query:   370 SGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAIT 429
               SFG+F  + V++ I  YDR L P   +  G P  L   QRMGIGL  S  S+AA AI 
Sbjct:   403 PASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIV 462

Query:   430 ETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSS 489
             ETVR  +A         +  V MS  W +P ++L G+A  F  IG++EF+Y E P +M S
Sbjct:   463 ETVRLQLA---------QDFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRS 513

Query:   490 IASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMAS 549
             + SAL  L  +V S ++S I+  V   T  GGK+GW+P ++NKG  DY++WLL  L + +
Sbjct:   514 VCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVSLGLVN 573

Query:   550 F-IYFLACCK 558
               +Y L C K
Sbjct:   574 IPVYALICVK 583

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 179/546 (32%), Positives = 299/546 (54%)

Query:    23 GGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIG 82
             GG R + FI+ NE  E++ S+G+  N +LYL   ++ME     NV  +W   TNF P++G
Sbjct:    16 GGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMGLTNFAPLLG 75

Query:    83 AFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSD-CESATWSQXXX 141
             A ++D+ +GR+  I +  +  +LG++ + LT  L Q  PP C+    D C+     Q   
Sbjct:    76 ALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCNNPHPDECDDPNKLQLGI 135

Query:   142 XXXXXXXXXXXXXXXXXXXXAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTC 201
                                  FG +Q ++  E   KG + S+F+WYY+++    + + T 
Sbjct:   136 LFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQGLKG-VASFFNWYYLTLTMVLIFSHTV 194

Query:   202 IVYIQDNLGWKVGFGVPAVIXXXXXXXXXXXXPFYVQSKANTSLLTGLIQVLVASYKNRH 261
             +VY+Q  + W +GF +P  +             FYV  K   S+ +G+ +V+VA+ K R 
Sbjct:   195 VVYLQ-TVSWVIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVFSGIARVIVAARKKRD 253

Query:   262 IKLS--SQTTEEMYHP--RKGSMLLVP-SENLRCLNKACIIKHPGQDSTPDRRASNPWSL 316
             +K+S     TEE Y P  + G +  +P ++  + L+KA +I   G D T +   +N W L
Sbjct:   254 LKISLVDDGTEEYYEPPVKPGVLSKLPLTDQFKFLDKAAVILD-G-DLTSEGVPANKWRL 311

Query:   317 CTVDQVEELKALIKVIPLWSTGIMIAVTIS-QSSFPVLQASTMDRHITPNFEIPSGSFGI 375
             C++ +VEE+K LI+V+P+WS GI+  V ++ Q++F V QA+ MDRH+ P+FEIP+ S  +
Sbjct:   312 CSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQATFMVFQATKMDRHMGPHFEIPAASITV 371

Query:   376 FTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRN 435
              + IT+ +W+  Y+ +L P   ++R    ++ L QRMGIG++F+  SM      E VRR 
Sbjct:   372 ISYITIGIWVPIYEHLLVPFLWRMR--KFRVTLLQRMGIGIVFAILSMFTAGFVEGVRRT 429

Query:   436 IAINEGISDDPRAVVKMSAMWV-LPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASAL 494
              A           + +MS  W+ LP  +L GL  +FN IG IEF+ S+ P  M SIA++L
Sbjct:   430 RATE---------MTQMSVFWLALPL-ILMGLCESFNFIGLIEFFNSQFPEHMRSIANSL 479

Query:   495 HGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFL 554
               L  + A+ ++S ++  V +++       W+  ++++G+ DY+Y+L+A L + + +YF 
Sbjct:   480 FPLSFAAANYLSSLLVTTVHKVSGTKDHPDWLNKDLDRGKLDYFYYLIAVLGVVNLVYFW 539

Query:   555 ACCKAY 560
              C   Y
Sbjct:   540 YCAHRY 545

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0010098 "suspensor development" evidence=IMP

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0048316 "seed development" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 181/547 (33%), Positives = 283/547 (51%)

Query:    18 NKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNF 77
             NKN  G  +   FI+  E  ER+A  G+  N+I YL  + NME  + +  +  W+     
Sbjct:    22 NKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYA 81

Query:    78 LPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWS 137
              P+IGAF+AD+ +GRY  I    + Y+ G+ LL ++  +     P C      C  AT  
Sbjct:    82 TPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVP-GLTPTCSG--ETCH-ATAG 137

Query:   138 QXXXXXXXXXXXXXXXXXXXXXXXAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMV 197
             Q                       +FGA+Q +  DE K K +  S+F+W+Y  +   +M+
Sbjct:   138 QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDE-KEKESKSSFFNWFYFVINVGAMI 196

Query:   198 AVTCIVYIQDNLGWKVGFGVPAVIXXXXXXXXXXXXPFYVQSKANTSLLTGLIQVLVASY 257
             A + +V+IQ N+GW  G GVP V              FY   K   S LT ++QV+VAS 
Sbjct:   197 ASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASC 256

Query:   258 KNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRA---SNPW 314
             +   +K+    +  +Y  +     ++ S  L              ++  D +    S+ W
Sbjct:   257 RKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKGAAKSSSW 315

Query:   315 SLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFPVLQASTMDRHITPNFEIPSGSF 373
              LCTV QVEELKALI+++P+W+TGI+ A   SQ  +  VLQ +T+D+H+ PNF+IPS S 
Sbjct:   316 KLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASL 375

Query:   374 GIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVR 433
              +F  ++V+ W   YD+++ P A K  G        QR+GIGL+ S  SM +  I E  R
Sbjct:   376 SLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVAR 435

Query:   434 RNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASA 493
              N      + ++    + M+  W +P + L G A  F  IGQ+EF+Y + P +M S+ SA
Sbjct:   436 LNYVQTHNLYNEE--TIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSA 493

Query:   494 LHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYF 553
             L    ++  + +++F++  V ++T+ GG+ GWI  N+N G  DY++WLLAGL+  +F+ +
Sbjct:   494 LSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVY 553

Query:   554 LACCKAY 560
             L   K Y
Sbjct:   554 LWIAKWY 560

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)]

 Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 171/546 (31%), Positives = 291/546 (53%)

Query:    24 GLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGA 83
             G + +PFII NE FE++  +G + N+++YL   +N+++     ++  ++   NF   + A
Sbjct:    46 GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGTINFGTFVAA 105

Query:    84 FLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLR-SDCESATWSQXXXX 142
             FL D+  GRY  +    I   LG  ++ LT  + Q  P AC     S C   +  Q    
Sbjct:   106 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAADSICNGPSGGQIAFL 165

Query:   143 XXXXXXXXXXXXXXXXXXXAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCI 202
                                AFGA+Q     E+  +G + S+F+WY+ +   + ++++T +
Sbjct:   166 LMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRG-IDSFFNWYFFTFTFAQILSLTLV 224

Query:   203 VYIQDNLGWKVGFGVPAVIXXXXXXXXXXXXPFYVQSKANTSLLTGLIQVLVASYKNRHI 262
             VY+Q N+ W +G  +PAV+              YV+ KA+ S L G+ QV+  + K R +
Sbjct:   225 VYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGL 284

Query:   263 KLSSQTTEEMYH---PRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTV 319
             K + Q    +Y+   P+  +  L  ++  R L+KA I+  P     PD + ++PW LCT+
Sbjct:   285 KPAKQPWLNLYNYYPPKYANSKLKYTDQFRFLDKAAILT-PEDKLQPDGKPADPWKLCTM 343

Query:   320 DQVEELKALIKVIPLWSTGIMIAVTISQS-SFPVLQASTMDRHI-TPNFEIPSGSFGIFT 377
              QVEE+K +++V+P+W    +  +TI+Q  ++PV QA   DR + +  F IP+ ++ +F 
Sbjct:   344 QQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRLGSGGFVIPAATYVVFL 403

Query:   378 IITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIA 437
             +  + ++I  YDR+L P   +I G    + L QR+G G+ F+TAS+      E  RR  A
Sbjct:   404 MTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATASLVVAGFVEERRRTFA 463

Query:   438 INE---GISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASAL 494
             + +   G++     +  MSAMW++P   L+G+A AF  IGQ+EFYY + P +M S A ++
Sbjct:   464 LTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQMEFYYKQFPENMRSFAGSI 523

Query:   495 HGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFL 554
               +G  V+S + SF++  V   T+      W+  ++NKGR D +Y+++AG+   +F YFL
Sbjct:   524 FYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGRLDLFYFMIAGILAVNFAYFL 583

Query:   555 ACCKAY 560
                + Y
Sbjct:   584 VMSRWY 589

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

GO:0090448 "glucosinolate:hydrogen symporter activity" evidence=IDA

GO:0090449 "phloem glucosinolate loading" evidence=IMP

GO:1901349 "glucosinolate transport" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M817	PTR6_ARATH	No assigned EC number	0.5193	0.9638	0.9225	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.25930001 hypothetical protein (605 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	581
pfam00854	372	pfam00854, PTR2, POT family	1e-52
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	3e-21
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	5e-13
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	1e-07
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	1e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.002
PRK09584	500	PRK09584, tppB, putative tripeptide transporter pe	0.003

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  184 bits (468), Expect = 1e-52
 Identities = 114/402 (28%), Positives = 181/402 (45%), Gaps = 41/402 (10%)

Query: 96  IGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGG 155
           I  G I Y +G VLL L  I     P                Q+ L Y  L L++LG GG
Sbjct: 4   ILLGSIIYAIGHVLLTLGAIPPSLSP---------------VQVALFYIGLYLIALGTGG 48

Query: 156 IRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGF 215
           I+ +  AFGA+Q ++            +FSW+Y S+ A S++A     Y+Q N+G+ +GF
Sbjct: 49  IKPNVSAFGADQFDETQ----DPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGF 104

Query: 216 GVPAVISLLSALSFFLASPFY--VQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMY 273
           G+PAV  LL+ L F L S  Y        +     +  ++ A+ KNR ++L   +   +Y
Sbjct: 105 GLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHW-LY 163

Query: 274 HPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIP 333
                ++      ++        +        P  +    +       V  L+A++ ++P
Sbjct: 164 W----ALEKYNKRSISQTKVHTRVAVI---FIPLPKFWALF--DQQGSVWLLQAILLMLP 214

Query: 334 LWSTGIMIAVTISQ-SSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRIL 392
           +W+  I+     +Q ++  V Q  TMDR I P FEIP  SF  F  + V++ +   D ++
Sbjct: 215 IWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLV 274

Query: 393 QPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKM 452
            P+    R K   L L QR G+G+     +    AI E  R   A   G++  P   V +
Sbjct: 275 YPLL---RLKR-GLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLT-SPGWTVPL 329

Query: 453 SAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASAL 494
             +W LP   +SG+ +A    G +EF    LP SM S+ + L
Sbjct: 330 FILWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTLL 367

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 97.0 bits (242), Expect = 3e-21
 Identities = 94/518 (18%), Positives = 166/518 (32%), Gaps = 87/518 (16%)

Query: 6   EEKNMITEPLLINKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEY----NMET 61
            E+   T  +     P+G    L  I   E +ER +  G+   +ILYL  +       + 
Sbjct: 5   TEEENTTLEMKFFGQPRG----LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDE 60

Query: 62  TAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQP 121
           T  T +   + +     PIIG +LAD  +G    I  G I   +G ++L ++++      
Sbjct: 61  THATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSG---- 116

Query: 122 PACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQ 181
                               LY  L L+ +G G  + +  +   E   K D  +  G   
Sbjct: 117 -----------------PGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG--- 156

Query: 182 SYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQ--- 238
             F+ +Y+ +   S++A      +  N GW VGFG+ AV  ++  + F L          
Sbjct: 157 --FTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGG 214

Query: 239 -----SKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNK 293
                  +   LL  L  ++V         L +Q T           LLV S     L  
Sbjct: 215 VPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGV-------LLVIS----ILIA 263

Query: 294 ACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ--SSFP 351
                                        +E + L+  IPL+   ++      Q  SS  
Sbjct: 264 IIYFAEA-----------FRSPKVF----DERRRLLAAIPLFLFAVIFWALYEQMGSSL- 307

Query: 352 VLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQR 411
            L A          FE+P   F       +IL+      +   +    +    Q     +
Sbjct: 308 NLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNK----QPSTPIK 363

Query: 412 MGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFN 471
             +GL+ +        +        +              +S  W++  +VL      F 
Sbjct: 364 FALGLILAGLGFLILLLAGIWFGGPSG------------LVSVWWLVLSYVLQSFGELFI 411

Query: 472 MIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFI 509
               +       P ++ S   A+  L ++    +   +
Sbjct: 412 SPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQV 449

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 71.7 bits (176), Expect = 5e-13
 Identities = 77/401 (19%), Positives = 147/401 (36%), Gaps = 87/401 (21%)

Query: 49  MILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVV 108
           ++LYL           TN+   +T      P+IGA +ADS +G++  I +  + Y++G  
Sbjct: 10  LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69

Query: 109 LLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQL 168
           L  L  + S   P                   L    L L++LG GGI+    AFG +Q 
Sbjct: 70  LASLGAVPSLGHPL---------------HDALSLVGLALIALGTGGIKPCVSAFGGDQF 114

Query: 169 EKGDENKSKGALQSYFSWYYVSVLASSMVAVT-------CIVYIQDNLGWKVGFGVPAVI 221
           E+   +        +FS++Y ++ A S+ +          +        + + FGVP ++
Sbjct: 115 EERQLS----LRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGIL 170

Query: 222 SLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSML 281
             L+ + F + S  Y +     ++++ +++ +V + K R    S           +   L
Sbjct: 171 MTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKRFRTRSE-------DWPRLHWL 223

Query: 282 LVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKV----IPLWST 337
              +            K+                   +  +   K L++V    IPL   
Sbjct: 224 DWAAP-----------KYL------------------IRMIRSTKRLLRVLFLFIPLP-- 252

Query: 338 GIMIAVTISQSSFPVLQASTMDRHITPNFEIPSGSFGIFTI-------ITVILWIGFYDR 390
            +  A+   Q S   LQA+ MD           G  G+F I       +  +L +     
Sbjct: 253 -MFWALFDQQGSRWTLQATRMD-----------GDVGLFPIQPDQMQAVNPLLVLILVPI 300

Query: 391 ILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITET 431
               +   +     +    ++M +G+L +  + A  A+ + 
Sbjct: 301 FDYVVYPALAKCGTRFTSLRKMAVGMLLAALAFAVAALLQN 341

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 46/212 (21%), Positives = 84/212 (39%), Gaps = 32/212 (15%)

Query: 24  GLRTLPFIIANEAFERMASMGLMPNMILYLC--GEYNMETTAGTNVLLIWTAATNFLPII 81
            L TL F+   E +ER +  G+   + +YL               +   ++A    L  +
Sbjct: 11  PLFTLFFV---ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSV 67

Query: 82  GAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLML 141
           G +  D   G    +  G I  +LG  +L        A     D               L
Sbjct: 68  GWWFGDRVWGTKKTMVLGGIVLMLGHFML--------AMSIYPD---------------L 104

Query: 142 LYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTC 201
           ++  LG +++G G  +++  +   +  E+GD  +  G     F+ +Y+S+   S ++   
Sbjct: 105 IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGG----FTLFYMSINIGSFISPLL 160

Query: 202 IVYIQDNLGWKVGFGVPAVISLLSALSFFLAS 233
              I +N G+ VGF + AV  ++  L+FF   
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 46/206 (22%), Positives = 83/206 (40%), Gaps = 28/206 (13%)

Query: 26  RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFL 85
           R + +++A + +E  +  G+   +ILYL  +   +      +   + +     PI+G FL
Sbjct: 9   RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFL 68

Query: 86  ADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSA 145
           AD  +G    +  G +   +G V+L  + I                          LY +
Sbjct: 69  ADKVLGNRMAVMLGALLMAIGHVVLGASEIHP----------------------SFLYLS 106

Query: 146 LGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYI 205
           L ++  G G  +S+      E  E  D  +  G     FS  Y +    S++A     Y 
Sbjct: 107 LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGG-----FSLMYAAGNVGSIIAPIACGYA 161

Query: 206 QDNLGWKVGFGVPAVISLLSALSFFL 231
           Q+   W +GFG+ A + +++ L  FL
Sbjct: 162 QEEYSWAMGFGL-AAVGMIAGLVIFL 186

Length = 493

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 32/196 (16%)

Query: 36  AFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPM 95
               +    L P + L    +  +  +    ++  ++       ++  +L+D   GR  +
Sbjct: 9   FLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSD-RFGRRRV 66

Query: 96  IGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGG 155
           +  G + + LG +LL                       A  S L LL     L+ LGGG 
Sbjct: 67  LLLGLLLFALGSLLL-----------------------AFASSLWLLLVGRFLLGLGGGA 103

Query: 156 IRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGF 215
           +  ++ A  AE     +              +       +++       + ++LGW+  F
Sbjct: 104 LYPAAAALIAEWFPPKE-------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLF 156

Query: 216 GVPAVISLLSALSFFL 231
            + A++ LL AL    
Sbjct: 157 LILAILGLLLALLLLF 172

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 35/192 (18%), Positives = 65/192 (33%), Gaps = 31/192 (16%)

Query: 40  MASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFG 99
           +    L P + LYL  +  +  T    +L  ++        +   L+D   GR  ++  G
Sbjct: 10  LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDR-FGRRRVLLIG 68

Query: 100 CITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSS 159
            + + LG++LL                          S L LL     L  LGGG +  +
Sbjct: 69  LLLFALGLLLLLFA-----------------------SSLWLLLVLRVLQGLGGGALFPA 105

Query: 160 SLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPA 219
           + A  A+     +                      + +       +    GW+  F + A
Sbjct: 106 AAALIADWFPPEE-------RGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILA 158

Query: 220 VISLLSALSFFL 231
           +++LL+A+   L
Sbjct: 159 ILALLAAVLAAL 170

Length = 346

>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 31/203 (15%)

Query: 31  IIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCV 90
           I + E +ER    GL   M +YL  +  M       +   ++A    L  IG +L D  +
Sbjct: 26  IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVL 85

Query: 91  GRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWS--QLMLLYSALGL 148
           G   +I  G I   +G  L+                         WS     ++Y  +  
Sbjct: 86  GTKRVIMLGAIVLAIGYALV------------------------AWSGHDAGIVYMGMAT 121

Query: 149 MSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDN 208
           +++G G  +++  +  +   EK D+ +  GA    F+ YY+S+   S  ++    ++   
Sbjct: 122 IAVGNGLFKANPSSLLSTCYEK-DDPRLDGA----FTMYYMSINIGSFFSMLATPWLAAK 176

Query: 209 LGWKVGFGVPAVISLLSALSFFL 231
            GW V F +  V  L++ ++F  
Sbjct: 177 YGWSVAFALSVVGMLITVVNFAF 199

Length = 500

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	581
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.96
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.94
PRK03545	390	putative arabinose transporter; Provisional	99.94
PRK05122	399	major facilitator superfamily transporter; Provisi	99.93
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.93
PRK10504	471	putative transporter; Provisional	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.93
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.93
PRK12382	392	putative transporter; Provisional	99.93
PRK11663	434	regulatory protein UhpC; Provisional	99.93
PRK10054	395	putative transporter; Provisional	99.93
PRK10489	417	enterobactin exporter EntS; Provisional	99.93
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.92
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.92
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.92
TIGR00893	399	2A0114 d-galactonate transporter.	99.92
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.92
PRK10642	490	proline/glycine betaine transporter; Provisional	99.92
PRK09874	408	drug efflux system protein MdtG; Provisional	99.92
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.91
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.91
PRK09705	393	cynX putative cyanate transporter; Provisional	99.91
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.91
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.91
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.91
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.91
TIGR00900	365	2A0121 H+ Antiporter protein.	99.91
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.9
PRK12307	426	putative sialic acid transporter; Provisional	99.9
PRK10091	382	MFS transport protein AraJ; Provisional	99.9
PRK09952	438	shikimate transporter; Provisional	99.9
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.9
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.9
TIGR00891	405	2A0112 putative sialic acid transporter.	99.9
PRK03893	496	putative sialic acid transporter; Provisional	99.9
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.9
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.9
PLN00028	476	nitrate transmembrane transporter; Provisional	99.9
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.9
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.9
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.9
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.9
PRK03699	394	putative transporter; Provisional	99.9
TIGR00898	505	2A0119 cation transport protein.	99.89
PRK03633	381	putative MFS family transporter protein; Provision	99.89
PRK15011	393	sugar efflux transporter B; Provisional	99.89
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.89
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.89
TIGR00895	398	2A0115 benzoate transport.	99.89
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.88
PRK15075	434	citrate-proton symporter; Provisional	99.88
KOG0254	513	consensus Predicted transporter (major facilitator	99.88
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.88
PRK11043	401	putative transporter; Provisional	99.88
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.88
PRK09528	420	lacY galactoside permease; Reviewed	99.88
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.87
KOG0569	485	consensus Permease of the major facilitator superf	99.87
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.87
KOG2532	466	consensus Permease of the major facilitator superf	99.87
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.87
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.86
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.86
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.86
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.85
PRK10133	438	L-fucose transporter; Provisional	99.85
PRK11010	491	ampG muropeptide transporter; Validated	99.85
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.85
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.84
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.84
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.83
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.83
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.83
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.83
PRK11902	402	ampG muropeptide transporter; Reviewed	99.83
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.82
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.81
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.8
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.8
TIGR00901	356	2A0125 AmpG-related permease.	99.79
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.79
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.78
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.77
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.76
PRK09848	448	glucuronide transporter; Provisional	99.75
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.75
PRK09669	444	putative symporter YagG; Provisional	99.75
PRK10429	473	melibiose:sodium symporter; Provisional	99.74
PTZ00207	591	hypothetical protein; Provisional	99.73
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.73
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.72
TIGR00805	633	oat sodium-independent organic anion transporter.	99.72
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.71
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.71
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.7
KOG2615	451	consensus Permease of the major facilitator superf	99.7
PF13347	428	MFS_2: MFS/sugar transport protein	99.69
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.68
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.66
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.65
PRK11462	460	putative transporter; Provisional	99.65
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.63
KOG2533	495	consensus Permease of the major facilitator superf	99.61
COG2211	467	MelB Na+/melibiose symporter and related transport	99.6
PRK15011	393	sugar efflux transporter B; Provisional	99.53
PRK10642	490	proline/glycine betaine transporter; Provisional	99.49
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.48
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.48
PRK03699	394	putative transporter; Provisional	99.45
PRK05122	399	major facilitator superfamily transporter; Provisi	99.45
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.43
PRK09952	438	shikimate transporter; Provisional	99.43
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.43
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.42
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.42
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.41
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.41
PRK09874	408	drug efflux system protein MdtG; Provisional	99.41
PRK09705	393	cynX putative cyanate transporter; Provisional	99.41
PRK12382	392	putative transporter; Provisional	99.38
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.38
PRK03545	390	putative arabinose transporter; Provisional	99.37
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.37
PRK10489	417	enterobactin exporter EntS; Provisional	99.37
PRK03893	496	putative sialic acid transporter; Provisional	99.36
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.36
PRK11663	434	regulatory protein UhpC; Provisional	99.35
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.35
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.34
PRK09528	420	lacY galactoside permease; Reviewed	99.33
TIGR00893	399	2A0114 d-galactonate transporter.	99.33
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.32
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.32
TIGR00891	405	2A0112 putative sialic acid transporter.	99.3
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.3
PRK03633	381	putative MFS family transporter protein; Provision	99.3
KOG2563	480	consensus Permease of the major facilitator superf	99.28
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.28
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.27
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.26
PRK11010	491	ampG muropeptide transporter; Validated	99.25
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.25
PRK15075	434	citrate-proton symporter; Provisional	99.25
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.24
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.23
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.23
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.22
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.21
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.2
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.19
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.18
TIGR00900	365	2A0121 H+ Antiporter protein.	99.17
PRK10091	382	MFS transport protein AraJ; Provisional	99.17
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.16
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.16
PRK10504	471	putative transporter; Provisional	99.14
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.13
PLN00028	476	nitrate transmembrane transporter; Provisional	99.13
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.13
PRK12307	426	putative sialic acid transporter; Provisional	99.13
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.12
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.12
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.12
KOG3626	735	consensus Organic anion transporter [Secondary met	99.11
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.11
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.11
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.1
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.1
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.08
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.08
PRK10054	395	putative transporter; Provisional	99.07
TIGR00895	398	2A0115 benzoate transport.	99.06
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.04
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.03
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.03
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.01
PRK10133	438	L-fucose transporter; Provisional	99.01
PRK11902	402	ampG muropeptide transporter; Reviewed	99.01
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.99
PF13347	428	MFS_2: MFS/sugar transport protein	98.98
PRK09848	448	glucuronide transporter; Provisional	98.98
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.98
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.97
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.94
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.94
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.91
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.91
TIGR00901	356	2A0125 AmpG-related permease.	98.89
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.89
TIGR00898	505	2A0119 cation transport protein.	98.87
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.86
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.86
PRK10429	473	melibiose:sodium symporter; Provisional	98.79
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.75
PRK09669	444	putative symporter YagG; Provisional	98.74
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.71
PRK11043	401	putative transporter; Provisional	98.7
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.69
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.65
KOG0569	485	consensus Permease of the major facilitator superf	98.62
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.62
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.61
KOG3762	618	consensus Predicted transporter [General function	98.59
COG2211	467	MelB Na+/melibiose symporter and related transport	98.55
KOG2532	466	consensus Permease of the major facilitator superf	98.54
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.52
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.52
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.46
PRK11462	460	putative transporter; Provisional	98.43
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.38
COG0477	338	ProP Permeases of the major facilitator superfamil	98.38
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.37
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.33
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.32
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.23
KOG0637	498	consensus Sucrose transporter and related proteins	98.22
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.2
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.2
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.19
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.19
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.19
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.17
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.16
KOG2533	495	consensus Permease of the major facilitator superf	98.08
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.05
KOG3762	618	consensus Predicted transporter [General function	97.96
PF12832	77	MFS_1_like: MFS_1 like family	97.95
KOG0254	513	consensus Predicted transporter (major facilitator	97.87
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.87
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.84
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.69
PTZ00207	591	hypothetical protein; Provisional	97.65
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.62
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.56
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.53
TIGR00805	633	oat sodium-independent organic anion transporter.	97.5
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.49
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.35
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.29
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.26
KOG2615	451	consensus Permease of the major facilitator superf	97.19
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.05
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.76
PRK03612	521	spermidine synthase; Provisional	96.47
KOG2563	480	consensus Permease of the major facilitator superf	96.44
KOG3626	735	consensus Organic anion transporter [Secondary met	96.19
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.15
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	96.14
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.86
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	95.6
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.1
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.03
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.87
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	93.5
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	92.93
KOG0637	498	consensus Sucrose transporter and related proteins	92.91
KOG3098	461	consensus Uncharacterized conserved protein [Funct	92.55
COG3202	509	ATP/ADP translocase [Energy production and convers	91.83
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	90.64
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	90.53
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	90.4
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	90.22
KOG3810	433	consensus Micronutrient transporters (folate trans	89.0
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	88.87
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	88.02
KOG3097	390	consensus Predicted membrane protein [Function unk	86.78
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	86.2
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	85.7
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	84.79
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	83.04
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	80.26

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-43  Score=379.93  Aligned_cols=534  Identities=39%  Similarity=0.683  Sum_probs=469.3

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHH
Q 039943           21 PKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGC  100 (581)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~  100 (581)
                      ....|+....++..+.++++++|++..++..|++.+++.+...+...++.+.......++.+++++|.|+||.+++.++.
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s  111 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS  111 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            45668889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCcc--cccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccch
Q 039943          101 ITYLLGVVLLWLTTILSQAQPPAC--DQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKG  178 (581)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~  178 (581)
                      ++..+|..++.++...+.+.+.+|  +...-.|+.++......++.++-+.++|.|+..|+..++.+|++++.++.++ .
T Consensus       112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~-~  190 (571)
T KOG1237|consen  112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEV-K  190 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchh-h
Confidence            999999999999988888887765  2223457777777889999999999999999999999999999995444333 5


Q ss_pred             hhhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHh
Q 039943          179 ALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYK  258 (581)
Q Consensus       179 ~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (581)
                      .+.+.+++++...++|..++..+..++.++.||.+.|.++.++..+++++++...+.++.++|.+++...+.+++..+.+
T Consensus       191 ~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~  270 (571)
T KOG1237|consen  191 GIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAF  270 (571)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHH
Confidence            56689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhh
Q 039943          259 NRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTG  338 (581)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (581)
                      +++...+.+++.. ....+........+++++++++....+.+.   +.+....+|+.|...++++.|..++.++.+...
T Consensus       271 k~~~~~~~~~~~~-~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~---~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~  346 (571)
T KOG1237|consen  271 KRKAVVSLDPEEL-YYDCTDSVAIEGTKPFRFLDKAALKTSDDL---KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTT  346 (571)
T ss_pred             HHhccCCCcchhc-cccccccccccCCcccchhhHhhccCCccc---ccccccCCccCCCceehhhhhhhhhhhHHHHHH
Confidence            9887766553222 222222223344667889998877655432   444557889999999999999999999999999


Q ss_pred             HHHHHhhcC-CChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHH
Q 039943          339 IMIAVTISQ-SSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLL  417 (581)
Q Consensus       339 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~  417 (581)
                      +.++..+.| .+.+..|+..++++.++++.++++.++.+..+...+..|+++++..|+.+|+.+++.+++..+++.+|++
T Consensus       347 i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~  426 (571)
T KOG1237|consen  347 IIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLV  426 (571)
T ss_pred             HHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccch
Confidence            999999999 9999999999999998569999999999999999999999999999999999987777899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHH
Q 039943          418 FSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGL  497 (581)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~  497 (581)
                      +..+++...+..+..+.+....     +.....+++++|++++++++|++|.+.+++.+++.++++|+++|+.+++++.+
T Consensus       427 ~si~sm~~aa~vE~krl~~~~~-----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~  501 (571)
T KOG1237|consen  427 LSILSMAVAGIVEAKRLKTAVS-----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLL  501 (571)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhh-----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHH
Confidence            9999999999999877766543     11223578999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcCCCCCCcC-CCCCCchhHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 039943          498 GMSVASLVASFIMNAVDEITKRGGKEGWIP-SNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCREE  566 (581)
Q Consensus       498 ~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~  566 (581)
                      ...+|+.++..+...+...++.  ..+|++ +++|+++.+.+|++++....+....+.++.++++.++.+
T Consensus       502 t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~  569 (571)
T KOG1237|consen  502 TVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK  569 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence            9999999999999988876543  448999 899999999999999999999999999999888776544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=4.8e-38  Score=322.26  Aligned_cols=461  Identities=19%  Similarity=0.245  Sum_probs=351.5

Q ss_pred             ccCCCCCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcC----CcchhhHHHHHHHHHHHHHHHHHHHHhhccccCc
Q 039943           17 INKNPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYN----METTAGTNVLLIWTAATNFLPIIGAFLADSCVGR   92 (581)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~----~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Gr   92 (581)
                      ..++.-++||.++.++..+++|+++|||+...+..|++.+++    ++.+++.-+.+.|....+..++++||++||++|+
T Consensus        12 ~~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~   91 (498)
T COG3104          12 LEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGT   91 (498)
T ss_pred             cccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            344555689999999999999999999999999999998888    9999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCC
Q 039943           93 YPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGD  172 (581)
Q Consensus        93 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~  172 (581)
                      |+++..+.+++.+|.++++..+                     ..+...++++.+++++|.|.+.|+..++++|++|+.|
T Consensus        92 ~~tI~lGail~~iGh~~L~~~~---------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~D  150 (498)
T COG3104          92 RRTIVLGAILMAIGHLVLAISS---------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDD  150 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHhccc---------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCC
Confidence            9999999999999999998873                     0156789999999999999999999999999999988


Q ss_pred             CcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCC--C--CChhhh
Q 039943          173 ENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKA--N--TSLLTG  248 (581)
Q Consensus       173 ~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~--~--~~~~~~  248 (581)
                      +     +|..+++++|++.|+|+.++|++.+++.++.||+..|.++++.+.++++.+.+.+++......  .  ......
T Consensus       151 p-----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~  225 (498)
T COG3104         151 P-----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNF  225 (498)
T ss_pred             c-----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhh
Confidence            4     599999999999999999999999999999999999999999999999888887755443321  1  111110


Q ss_pred             HH----HHHHHHHhhc-cccccCccccccccCCCCCccccCCcchhhhhh-----hhhccCCCCCCCCCCCCCCCCCccc
Q 039943          249 LI----QVLVASYKNR-HIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNK-----ACIIKHPGQDSTPDRRASNPWSLCT  318 (581)
Q Consensus       249 ~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  318 (581)
                      ..    ..+......- .....                   .+..+....     ..+..-.         ....++   
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~l~-------------------~~~~~~~~~~~~i~~~~~~~~---------~~~~~~---  274 (498)
T COG3104         226 LLPVLGGLVVMILAALLTLLLN-------------------QNTFSGVLLVISILIAIIYFA---------EAFRSP---  274 (498)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHH---------HHhccC---
Confidence            00    0000000000 00000                   000000000     0000000         000111   


Q ss_pred             hhhHHHHHhHHhhHhHHHhhHHHHHhhcC-CChh-heecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHh
Q 039943          319 VDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFP-VLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIA  396 (581)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (581)
                      +.. +++|+++..+++++...+||..+.| .+.+ ++.....+++.. ++++++..++.+|++.+++++|+.+++..++.
T Consensus       275 ~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~  352 (498)
T COG3104         275 KVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLG  352 (498)
T ss_pred             ccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhh
Confidence            112 5789999999999999999999999 4444 444445555534 58999999999999999999999999888777


Q ss_pred             hhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhh
Q 039943          397 SKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQI  476 (581)
Q Consensus       397 ~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  476 (581)
                      ++. ++   ++...++..|++++++++++.........+            +....+.+|++++++++++||.+.+|...
T Consensus       353 ~~~-~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~~~------------~~~~~s~~~lil~y~l~s~gEL~iSpvGL  416 (498)
T COG3104         353 RGN-KQ---PSTPIKFALGLILAGLGFLILLLAGIWFGG------------PSGLVSVWWLVLSYVLQSFGELFISPVGL  416 (498)
T ss_pred             cCC-CC---CCcchHHHHHHHHHHHHHHHHHHHHHhhcC------------CCCCcCHHHHHHHHHHHHHHHHHhCHHHH
Confidence            764 33   789999999999999999988876432111            12357999999999999999999999999


Q ss_pred             eeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 039943          477 EFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLAC  556 (581)
Q Consensus       477 ~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~  556 (581)
                      +++.+.+|+...+..++++.+.+..++.++..+.+.... ++     .    ..+......+|+.++.+.++..+..+..
T Consensus       417 s~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~-----~----~~~~~~~~~~F~~~g~v~i~~~~~~~~~  486 (498)
T COG3104         417 SMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD-----P----AYTAFIEGRVFGTIGVVAIVIGILLLLL  486 (498)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-cc-----h----hhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999887763211 00     0    0111234567888888888888777777


Q ss_pred             hccccc
Q 039943          557 CKAYGP  562 (581)
Q Consensus       557 ~~~~~~  562 (581)
                      .++.++
T Consensus       487 ~~~~~r  492 (498)
T COG3104         487 SPKLNR  492 (498)
T ss_pred             hHHHHH
Confidence            665433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=3.9e-36  Score=324.06  Aligned_cols=462  Identities=13%  Similarity=0.162  Sum_probs=327.1

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHH
Q 039943           21 PKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGC  100 (581)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~  100 (581)
                      .++|||.++.+++.++++++++|++..+++.|+++++|++.++++++.+.+.+...+..+++|+++||++||||+++++.
T Consensus         9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~   88 (489)
T PRK10207          9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA   88 (489)
T ss_pred             hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999569999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhh
Q 039943          101 ITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGAL  180 (581)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r  180 (581)
                      +++.++.+.+.++.+                      ....++++|+++|+|.|...|+..++++|++|+++     ++|
T Consensus        89 ~~~~~g~~~~~~~~~----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~-----~~~  141 (489)
T PRK10207         89 IVLAIGYFMTGMSLL----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD-----PRL  141 (489)
T ss_pred             HHHHHHHHHHHHhcc----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc-----hhh
Confidence            999999999998761                      12346688999999999999999999999999865     467


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCccccc--CCCCChhhhHHHHH-----
Q 039943          181 QSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQS--KANTSLLTGLIQVL-----  253 (581)
Q Consensus       181 ~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----  253 (581)
                      ++++++++++.|+|..+||.+++++.++.||++.|+++++..+++++.+...++.+++.  +|++++.+.....+     
T Consensus       142 ~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~  221 (489)
T PRK10207        142 DGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGS  221 (489)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHH
Confidence            88999999999999999999999999999999999998776665655555544333322  22222221101000     


Q ss_pred             ---HHHHhhccccccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHh
Q 039943          254 ---VASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIK  330 (581)
Q Consensus       254 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (581)
                         ............... ......       ......-++.+..   +                   .+. .++++.+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~-~~~~~~-------~~i~~~~f~~~~~---~-------------------~~~-~~r~r~~~  270 (489)
T PRK10207        222 VVMIFVCAWLMHNVEVAN-LVLIVL-------SIVVTIIFFREAF---K-------------------LDK-TGRNKMFV  270 (489)
T ss_pred             HHHHHHHHHHHhhhhHHH-HHHHHH-------HHHHHHHHHHHHh---c-------------------CCH-HHHHHHHH
Confidence               000000000000000 000000       0000000000000   0                   001 12444555


Q ss_pred             hHhHHHhhHHHHHhhcC-CChhheecc-cCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCc
Q 039943          331 VIPLWSTGIMIAVTISQ-SSFPVLQAS-TMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRL  408 (581)
Q Consensus       331 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~  408 (581)
                      .+.++.....+|..+.| ......+.. ..++... ++.+++..++.++++.+++..|+.++    +.+|+++|+.++++
T Consensus       271 ~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~----l~~rl~~r~~~~~~  345 (489)
T PRK10207        271 AFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAG----IYTHLGSKGKDLSM  345 (489)
T ss_pred             HHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHH----HHHHHhhCCCCCCc
Confidence            55556667888888888 333322222 3444444 67788888889999999889998654    66777666555788


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhh
Q 039943          409 KQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMS  488 (581)
Q Consensus       409 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~r  488 (581)
                      ..++.+|+++.+++++.........   ...+         ...+.||+++.+++.++||.+.+|..++++++.+|++++
T Consensus       346 ~~k~~~G~~l~~~~~~~~~~~~~~~---~~~~---------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~  413 (489)
T PRK10207        346 PMKFTLGMFLCSLGFLTAAAAGMWF---ADAQ---------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLM  413 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh---cCCC---------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHH
Confidence            9999999999998887654432110   0001         135778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 039943          489 SIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPC  563 (581)
Q Consensus       489 g~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~  563 (581)
                      |.++|++++.+.+|+.++..+........  .   ...|. .....+..+|..+++.++++.++++++.++.++.
T Consensus       414 g~~~g~~~l~~~ig~~lg~~l~~~~~~~~--~---~~~~~-~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~  482 (489)
T PRK10207        414 GFILGMWFLTQAAAFLLGGYVATFTAVPD--N---ITDPL-ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM  482 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccc--c---cccch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988876442100  0   01000 0122467889999999988888888877765543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=2.8e-35  Score=317.23  Aligned_cols=452  Identities=16%  Similarity=0.203  Sum_probs=327.7

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhh--cCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHH
Q 039943           21 PKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGE--YNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGF   98 (581)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~   98 (581)
                      ..+++|.++.+++.++++++++|++.++++.|++++  +|++..+++++.+.+.++..++++++|+++||++|||+++.+
T Consensus         5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~   84 (475)
T TIGR00924         5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL   84 (475)
T ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence            346788899999999999999999999999999887  999999999999999999999999999999994599999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccch
Q 039943           99 GCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKG  178 (581)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~  178 (581)
                      +.++.+++.+++++++                       +...++++|.+.|+|.|...|+..++++|++|++++    +
T Consensus        85 ~~~~~~~g~~~~~~~~-----------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~----~  137 (475)
T TIGR00924        85 GGIVLMLGHFMLAMSI-----------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM----P  137 (475)
T ss_pred             HHHHHHHHHHHHHhcc-----------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc----c
Confidence            9999999999888876                       566788899999999999999999999999987553    3


Q ss_pred             hhhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhh----hHHHH--
Q 039943          179 ALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLT----GLIQV--  252 (581)
Q Consensus       179 ~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--  252 (581)
                      +|++++++++.+.|+|..+||++++++.++.||++.|+++++..+++.+.+....+.+++.++++++..    +..+.  
T Consensus       138 ~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (475)
T TIGR00924       138 RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLL  217 (475)
T ss_pred             cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHH
Confidence            588899999999999999999999999998999999999887766666655554444332222111110    00000  


Q ss_pred             -----HHHHHhhccccccCccccccccCCCCCccccCCcc-hhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHH
Q 039943          253 -----LVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSEN-LRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELK  326 (581)
Q Consensus       253 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (581)
                           +............ ..        .. ..+..... ..+........+             +.    .+. .+++
T Consensus       218 ~~~~~~~~~~~~~~~~~~-~~--------~~-~~~~~~~~~~~~~~~~~~~~~-------------~~----~~~-~~~~  269 (475)
T TIGR00924       218 ALLAALALVFFCAWLMHH-VV--------IA-NILLMTVTLAVIIFFFRLAFK-------------PR----LDA-VARN  269 (475)
T ss_pred             HHHHHHHHHHHHHHHHhc-cH--------HH-HHHHHHHHHHHHHHHHHHHHh-------------cc----CCH-HHHh
Confidence                 0000000000000 00        00 00000000 000000000000             00    011 1233


Q ss_pred             hHHhhHhHHHhhHHHHHhhcC--CChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCC
Q 039943          327 ALIKVIPLWSTGIMIAVTISQ--SSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPC  404 (581)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~  404 (581)
                      +....+++++...++|..+.|  .+..+++...++.... +++++++.+..+|++.+++..|+.+.+.    .|+.+|..
T Consensus       270 ~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~----~~l~~~~~  344 (475)
T TIGR00924       270 KMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIW----TRLGRKGK  344 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHH----HHHHhCCC
Confidence            444567777888889999998  4445555555666655 7888999999999999999999977543    34433322


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCC
Q 039943          405 QLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELP  484 (581)
Q Consensus       405 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P  484 (581)
                      +.+...++.+|+++.++++...+.....    ..         .....++||+++.+++.++||.+..|..++++.+.+|
T Consensus       345 ~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~---------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP  411 (475)
T TIGR00924       345 DPTTPLKFTLGMLFCGASFLTFAASIWF----AD---------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAP  411 (475)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHhh----cC---------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence            2566777899999999998887764321    01         1114689999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhcccc
Q 039943          485 RSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYG  561 (581)
Q Consensus       485 ~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~  561 (581)
                      ++.||+++|++.+...+|+.+++.+.....+..      +          ...+|...++++++..++++++.|..+
T Consensus       412 ~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (475)
T TIGR00924       412 QRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ------G----------VTGVFGKIGLVTLLVGVVMALMVPWLN  472 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c----------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988877654321      2          255777888888877777777766543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=4.6e-34  Score=303.68  Aligned_cols=448  Identities=17%  Similarity=0.233  Sum_probs=319.5

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc-CchhhHHHHH
Q 039943           22 KGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCV-GRYPMIGFGC  100 (581)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~-Grr~~~~~~~  100 (581)
                      .+|+|.++.+++.++++++++|++..+++.|+++++|++..+++.+.+.+.+...++++++|+++|| + ||||++.++.
T Consensus         5 ~~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDR-ilGrrr~iliG~   83 (493)
T PRK15462          5 ASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADK-VLGNRMAVMLGA   83 (493)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHH
Confidence            3478899999999999999999999999999999999999999999999999999999999999999 6 9999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhh
Q 039943          101 ITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGAL  180 (581)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r  180 (581)
                      ++..++.++++...+                      +...++.+..+.++|.|...++..++++|++|+++     ++|
T Consensus        84 il~~lg~lll~~~~~----------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~-----~~R  136 (493)
T PRK15462         84 LLMAIGHVVLGASEI----------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTD-----PRR  136 (493)
T ss_pred             HHHHHHHHHHHHhhc----------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCC-----ccc
Confidence            999998877664320                      12234455566677888888999999999999866     469


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCccccc---CCCCChhhhHHHH-----
Q 039943          181 QSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQS---KANTSLLTGLIQV-----  252 (581)
Q Consensus       181 ~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----  252 (581)
                      .++++++|...|+|+.++|.+++++.+..||++.|.++++.++++++.+....+.+.+.   ++++.+.++....     
T Consensus       137 ~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  216 (493)
T PRK15462        137 DGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWL  216 (493)
T ss_pred             cceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999998887777766665544433221   1111110110000     


Q ss_pred             -HHH----HHhhccccccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHh
Q 039943          253 -LVA----SYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKA  327 (581)
Q Consensus       253 -~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (581)
                       ...    ............. ..+.        ....-...++-.  ....                   ....+++++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~--~~~~-------------------~~~~~er~r  266 (493)
T PRK15462        217 LVLLVATPALITVLFWKEWSV-YALI--------VATIIGLGVLAK--IYRK-------------------AENQKQRKE  266 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHH--------HHHHHHHHHHHH--HHHh-------------------cCCHHHHhh
Confidence             000    0000000000000 0000        000000000000  0000                   011246788


Q ss_pred             HHhhHhHHHhhHHHHHhhcC--CChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCC
Q 039943          328 LIKVIPLWSTGIMIAVTISQ--SSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQ  405 (581)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~  405 (581)
                      +...++++...+.||..+.|  .++.++...+.|+++. ++++++..++.+|++.+++..|+...+..++.+    |+++
T Consensus       267 ~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~----~~~~  341 (493)
T PRK15462        267 LGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVA----GNRT  341 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhc----CCCC
Confidence            88888899999999999999  6666666677888877 899999999999999999999998775433322    2223


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCc
Q 039943          406 LRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPR  485 (581)
Q Consensus       406 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~  485 (581)
                      ++...++.+|+++++++++++......    .+.+|         ..+.+|++..++++++||.+.+|...+.+.+.+|+
T Consensus       342 ~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~~---------~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~  408 (493)
T PRK15462        342 VRIWGKFALGLGLMSAGFCILTLSARW----SAMYG---------HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIP  408 (493)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCCC---------CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChH
Confidence            788899999999999999888764421    11111         36888999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHH
Q 039943          486 SMSSIASALHGLGM-SVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMAS  549 (581)
Q Consensus       486 ~~rg~~~g~~~~~~-~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~  549 (581)
                      +.+|+.+|++.+.. .+|+.++..+..........    +-.....+...|..+|..++.+.+++
T Consensus       409 ~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        409 GVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFD----ASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC----ccccccchhhhHHHHHHHHHHHHHHH
Confidence            99999999997754 68888887776655321000    00000001235777888888777766

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=1e-32  Score=298.99  Aligned_cols=458  Identities=16%  Similarity=0.214  Sum_probs=320.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH
Q 039943           23 GGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCIT  102 (581)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (581)
                      +++|.++.+++.++++++++|++..+++.|+++++|++.++++++.+.+........+++|+++||++|||+++..+.++
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~   97 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV   97 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            56678899999999999999999999999999999999999999998888777777889999999933999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhH
Q 039943          103 YLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS  182 (581)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (581)
                      +.++..+++++.+                      +...++++|+++|++.|...|+..++++|++|+++     ++|.+
T Consensus        98 ~~ig~~l~~~~~~----------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~-----~~~~~  150 (500)
T PRK09584         98 LAIGYALVAWSGH----------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD-----PRLDG  150 (500)
T ss_pred             HHHHHHHHHHhcc----------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc-----hhhhh
Confidence            9999888887641                      34567788999999999999999999999998755     45677


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCccccc--CCCCChhhhHH------HHHH
Q 039943          183 YFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQS--KANTSLLTGLI------QVLV  254 (581)
Q Consensus       183 ~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~~~  254 (581)
                      ++++++++.++|..+||++++++.++.||++.|++.++..+++++.++...+..++.  +|++++.+...      ....
T Consensus       151 ~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (500)
T PRK09584        151 AFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVA  230 (500)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHH
Confidence            899999999999999999999999999999999998876666655544433322221  22211111100      0000


Q ss_pred             HHHhhccccccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhH
Q 039943          255 ASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPL  334 (581)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (581)
                      ............+.    .     +..................                   +... ..++++....+.+
T Consensus       231 ~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~  281 (500)
T PRK09584        231 LIAIATWLLHNQEI----A-----RMALGVVALGIVVIFGKEA-------------------FAMK-GAARRKMIVAFIL  281 (500)
T ss_pred             HHHHHHHHHhcchH----H-----HHHHHHHHHHHHHHHHHHH-------------------hhcC-HHHHHHHHHHHHH
Confidence            00000000000000    0     0000000000000000000                   0001 1234555555666


Q ss_pred             HHhhHHHHHhhcC-CChhheecc-cCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHH
Q 039943          335 WSTGIMIAVTISQ-SSFPVLQAS-TMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRM  412 (581)
Q Consensus       335 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~  412 (581)
                      ++..+.+|..+.| +.....+.. ..+.... ++.+++..++.+|++.+++..|+.++    +.+|+++|   .+..+++
T Consensus       282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~----~~~~l~~r---~~~~~~~  353 (500)
T PRK09584        282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAA----IYNKMGDR---LPMPHKF  353 (500)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHH----HHHHhCcC---CCcHHHH
Confidence            6778889999998 555444332 3344444 67788889999999999999998765    45666666   6778899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHH
Q 039943          413 GIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIAS  492 (581)
Q Consensus       413 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~  492 (581)
                      .+|+++++++++........    .+.+         ...+.+|+++.+++.++||.+.+|...+++.+.+|++.||+.+
T Consensus       354 ~~G~~l~~l~f~~l~~~~~~----~~~~---------~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~  420 (500)
T PRK09584        354 AIGMVLCSGAFLVLPLGAKF----ANDA---------GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIM  420 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHh----cCCC---------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHH
Confidence            99999999999887664421    1111         1467889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 039943          493 ALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPC  563 (581)
Q Consensus       493 g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~  563 (581)
                      |++.+...+|+.++..+.........  ..+..    ...+.+..+|..+++++++..++++...+..++.
T Consensus       421 g~~~l~~a~g~~~~g~~~~~~~~~~~--~~~~~----~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~  485 (500)
T PRK09584        421 GSWFLTTAGAALIAGYVANLMAVPDN--VTDPL----MSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM  485 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccc--cccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988998888877653321000  00000    1122477889999988888777777777665554

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.96  E-value=5.5e-26  Score=249.89  Aligned_cols=333  Identities=23%  Similarity=0.406  Sum_probs=265.2

Q ss_pred             HHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccC
Q 039943           40 MASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQA  119 (581)
Q Consensus        40 ~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (581)
                      ++|||+...+..|+.+.+|++.+++..+...+.....+.++++|+++|+++||++++..+.++..+|.+++++....+. 
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~-   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSS-   79 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccc-
Confidence            4689999999999999999999999999999999999999999999999999999999999999999998887641110 


Q ss_pred             CCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHH
Q 039943          120 QPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAV  199 (581)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p  199 (581)
                                    ........++.+..+.++|.|+..|+..++.+|+++++++    ++|.+.++++|+++|+|+.+++
T Consensus        80 --------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~----~~~~s~F~~fY~~iNiGSlis~  141 (654)
T TIGR00926        80 --------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL----SLRSRFFSFFYFAINAGSLIST  141 (654)
T ss_pred             --------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch----hHHHHHHHHHHHHHHHHHHHHH
Confidence                          0112345577889999999999999999999999986543    5699999999999999999999


Q ss_pred             HHHHhhhcc-------ccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhccccccCcccccc
Q 039943          200 TCIVYIQDN-------LGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEM  272 (581)
Q Consensus       200 ~~~~~i~~~-------~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (581)
                      ++.+++.+.       .+|..+|.+++++++++++++....+++++.+|.++...+..+.+....++++.....      
T Consensus       142 ~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~------  215 (654)
T TIGR00926       142 IITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE------  215 (654)
T ss_pred             HHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc------
Confidence            999999744       3699999999999999998888877777766676665555556555555443211110      


Q ss_pred             ccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHHHhhcC-CChh
Q 039943          273 YHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFP  351 (581)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  351 (581)
                                  ..+.+|++.+....                   ....+++.|++++.+++++....+|..+.| .+.+
T Consensus       216 ------------~~~~~~ld~a~~~~-------------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~  264 (654)
T TIGR00926       216 ------------HWPLHWLDYAKDKH-------------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRW  264 (654)
T ss_pred             ------------ccchhHHHHhcccc-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence                        00123343322111                   123466789999999999999999999999 8888


Q ss_pred             heecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 039943          352 VLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITET  431 (581)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  431 (581)
                      ..|...++..++ ++.+++..++.++++.+++..|+++..+.|..+|.+.+   .++..++.+|++++++++.+.+..+.
T Consensus       265 ~~qa~~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~  340 (654)
T TIGR00926       265 TLQATRMDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQL  340 (654)
T ss_pred             HHHHHHhcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888877777765 67889999999999999999999998888888776554   78899999999999999877666554


Q ss_pred             H
Q 039943          432 V  432 (581)
Q Consensus       432 ~  432 (581)
                      .
T Consensus       341 ~  341 (654)
T TIGR00926       341 K  341 (654)
T ss_pred             H
Confidence            4

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.94  E-value=1.4e-23  Score=228.16  Aligned_cols=178  Identities=12%  Similarity=0.039  Sum_probs=147.5

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      ..+..+.+..++..+.. .+.+...+.+.+++|.+.++.+|+.+.+.++..++.++.|+++|| +|||++++.+.+++.+
T Consensus         6 ~~~~~~~~~~~~~~ld~-tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          6 LTLVIIVLVYIPVAIDA-TVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFGL   83 (495)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHH
Confidence            33444444444444443 344444556678999999999999999999999999999999999 7999999999999999


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +.+++++++                       +.+.++++|+++|+|.+...|...+.+.+.++++      ++|+++++
T Consensus        84 ~~~~~~~a~-----------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~------~~r~~~~g  134 (495)
T PRK14995         84 ASLAAAFSP-----------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEE------KQRNMALG  134 (495)
T ss_pred             HHHHHHHcC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHH
Confidence            999999988                       7889999999999999999888888887777432      67999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCC
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASP  234 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~  234 (581)
                      ++....++|..+||.+++++.++.||||.|++...+.++.++......+
T Consensus       135 ~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~  183 (495)
T PRK14995        135 VWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVP  183 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999987766665554444333

>PRK03545 putative arabinose transporter; Provisional

Probab=99.94  E-value=8e-24  Score=223.13  Aligned_cols=173  Identities=12%  Similarity=0.084  Sum_probs=146.1

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      |..++.+.+..++.....+...+.+ +.+.+++|.+.++.+++.+.+.+++.++.++.|+++|| +||||++..+.++..
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~   85 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFI   85 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHH
Confidence            3344555555555444444333334 45678999999999999999999999999999999999 799999999999999


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      ++.+.+.+++                       +++.+++.|+++|++.+...+...+++.|++|+       ++|++++
T Consensus        86 ~~~~~~~~~~-----------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~  135 (390)
T PRK03545         86 ASHVLSALAW-----------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPA-------GKKAQAL  135 (390)
T ss_pred             HHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-------hhhhhHH
Confidence            9999999887                       788999999999999999999999999999998       6799999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 039943          185 SWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSF  229 (581)
Q Consensus       185 ~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~  229 (581)
                      ++...+.++|..++|.+++.+.+..|||+.|++.++..++..+..
T Consensus       136 g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~  180 (390)
T PRK03545        136 SLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL  180 (390)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988999999999887666554443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.93  E-value=2e-23  Score=220.70  Aligned_cols=376  Identities=12%  Similarity=0.030  Sum_probs=245.6

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      +|.+..+.+..++..++.....+.++.|+++++|.|..+.+++.+++.++..+++++.|+++|| +||||++..+.++.+
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~   92 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCA   92 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHH
Confidence            4556677777888888877788899999999999999999999999999999999999999999 799999999999888


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      ++.+.+.++.....               ....++..+++.|+++|++.+...+...+++.|.+|+       ++|+++.
T Consensus        93 ~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~  150 (399)
T PRK05122         93 LSGLLYLLAGLLAA---------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGA-------LHTGRVI  150 (399)
T ss_pred             HHHHHHHHhhhhhc---------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcCh-------hhhccch
Confidence            87766655431000               0112566889999999999999999999999999987       5699999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhccccc
Q 039943          185 SWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKL  264 (581)
Q Consensus       185 ~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (581)
                      ++.....++|..+||.+++++.+..||++.+.+.++..++..+..   .+ .+++++++++..                 
T Consensus       151 ~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~-----------------  209 (399)
T PRK05122        151 SWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVKGERL-----------------  209 (399)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCCccch-----------------
Confidence            998888899999999999999998999998877665444332221   11 111110000000                 


Q ss_pred             cCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhH-hHHHhhHHHHH
Q 039943          265 SSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVI-PLWSTGIMIAV  343 (581)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  343 (581)
                                                                      ++    .   +..++..... ...+....+..
T Consensus       210 ------------------------------------------------~~----~---~~~~~~~~~~~~~~~~~~~~~~  234 (399)
T PRK05122        210 ------------------------------------------------PF----R---RVLGRVWPYGMGLALASIGFGT  234 (399)
T ss_pred             ------------------------------------------------hH----H---HHHHHHHHHHHHHHHHHHHHHH
Confidence                                                            00    0   0001110000 01111111111


Q ss_pred             hhcCCChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHH
Q 039943          344 TISQSSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASM  423 (581)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~  423 (581)
                      .....+.++.+ ...    .    . .........+..++..+    +..++.+|.++|       +.+..+.++.++++
T Consensus       235 ~~~~~~~~~~~-~~~----~----~-~~~~~~~~~~~~~~~~~----~~g~l~~r~~~~-------~~~~~~~~~~~~~~  293 (399)
T PRK05122        235 IATFITLYYAA-RGW----D----G-AALALTLFGVAFVGARL----LFGNLINRLGGL-------RVAIVSLLVEILGL  293 (399)
T ss_pred             HHHHHHHHHHH-ccc----c----c-chHHHHHHHHHHHHHHH----HHHHHHHHhccH-------HHHHHHHHHHHHHH
Confidence            11111222111 110    0    0 00011111112222222    233455664433       56666666666666


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHH
Q 039943          424 AAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVAS  503 (581)
Q Consensus       424 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~  503 (581)
                      .......                      +.+..++..++.+++.+...+.......+..|++.||++.|+.+....+|.
T Consensus       294 ~~~~~~~----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  351 (399)
T PRK05122        294 LLLWLAP----------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSL  351 (399)
T ss_pred             HHHHHhc----------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            5544321                      334445567788888888888777777788999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhc
Q 039943          504 LVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCK  558 (581)
Q Consensus       504 ~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~  558 (581)
                      .+++.+.+.+.+..                +++..|++.+++++++.+..+++.+
T Consensus       352 ~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        352 GITGPLAGLVASWF----------------GYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHHHHHHHHHHc----------------CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99998888887632                2577888888888887766665543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=2.7e-23  Score=211.86  Aligned_cols=181  Identities=15%  Similarity=0.169  Sum_probs=165.1

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHH
Q 039943           22 KGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCI  101 (581)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~  101 (581)
                      +..|..++.+.++.|.-..+-+..+..+|. +.+++|.|..++|+++++|.++..++.|+...+.|| +.||++++..+.
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHH
Confidence            344666777888888888888877777765 667999999999999999999999999999999999 799999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhh
Q 039943          102 TYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQ  181 (581)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~  181 (581)
                      +++++.+++++++                       +++.++++|++.|+..|.+++...+..+++.|+       ++|+
T Consensus        87 lFi~~n~l~alAp-----------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp-------~~~~  136 (394)
T COG2814          87 LFIVSNLLSALAP-----------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPP-------GKRG  136 (394)
T ss_pred             HHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------cchh
Confidence            9999999999999                       899999999999999999999999999999999       7799


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCC
Q 039943          182 SYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASP  234 (581)
Q Consensus       182 ~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~  234 (581)
                      ++.++...+..++..+|.+++.++.|.+|||..|++.+.+.++.++..+...|
T Consensus       137 ~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         137 RALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999988888877776666555

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.93  E-value=2e-23  Score=221.17  Aligned_cols=175  Identities=17%  Similarity=0.083  Sum_probs=148.2

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHH
Q 039943           22 KGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCI  101 (581)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~  101 (581)
                      +.+|..+....+..+++.+..+......| .+.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++..+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~   88 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVA   88 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHH
Confidence            44455555555666666666665545444 5567899999999999999999999999999999999 799999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhh
Q 039943          102 TYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQ  181 (581)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~  181 (581)
                      +..++.+++.++.                       +++.+++.|++.|++.+...+...+++.|.+|+       ++|+
T Consensus        89 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~  138 (406)
T PRK11551         89 LFGLFSLATAQAW-----------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGP-------RLRG  138 (406)
T ss_pred             HHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH-------HHHH
Confidence            9888888888877                       778899999999999999999999999999988       6799


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHH
Q 039943          182 SYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALS  228 (581)
Q Consensus       182 ~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~  228 (581)
                      +++++.+....+|..++|.+++.+.+..+|++.|++.+++.++..+.
T Consensus       139 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK11551        139 TAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL  185 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988888889999999877655544433

>PRK10504 putative transporter; Provisional

Probab=99.93  E-value=4.1e-23  Score=223.26  Aligned_cols=177  Identities=11%  Similarity=0.107  Sum_probs=153.5

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      |.++.+.+..++..+..+.+.+.+|.+.+ ++|.+..+.+++.+.+.++..++.++.|+++|| +|||++++.+.++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~   87 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFTL   87 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHH
Confidence            35666777777888888888888887764 799999999999999999999999999999999 7999999999999988


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +.+++.+++                       +.+.+++.|+++|++.+...|...+++.|.+|+       ++|+++++
T Consensus        88 ~~~~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  137 (471)
T PRK10504         88 GSLFCALSG-----------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR-------EQYMAAMT  137 (471)
T ss_pred             HHHHHHHhC-----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH-------HHHHHHHH
Confidence            888887766                       678889999999999999999999999999988       67999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCC
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASP  234 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~  234 (581)
                      +.+...++|..++|.+++++.++.||++.|++.....++..+......+
T Consensus       138 ~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~  186 (471)
T PRK10504        138 FVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP  186 (471)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999987766655554444333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=2.5e-23  Score=220.02  Aligned_cols=168  Identities=17%  Similarity=0.203  Sum_probs=152.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVV  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  108 (581)
                      ..++...++...+.+.+.++++.|+++++|+|..+.|++.++..+...+..+++|+++|| +|||+++..+.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHH
Confidence            556678888899999999999999999999999999999999999999999999999999 7999999999999999999


Q ss_pred             HHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHH
Q 039943          109 LLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYY  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (581)
                      .+.+++                       +.+.+++.|++.|++.+...|...+++.|.+|+       ++|+++.++.+
T Consensus        92 ~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~a~~~~~  141 (400)
T PRK11646         92 TMAIAH-----------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP-------HQRGRFFSLLM  141 (400)
T ss_pred             HHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHH
Confidence            888776                       678889999999999998899999999999987       67999999999


Q ss_pred             HHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHH
Q 039943          189 VSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALS  228 (581)
Q Consensus       189 ~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~  228 (581)
                      ...++|..+||.+++++. .+||++.|++.++..++..+.
T Consensus       142 ~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        142 MQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998 679999999887766555443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.93  E-value=2.3e-23  Score=231.91  Aligned_cols=156  Identities=14%  Similarity=0.058  Sum_probs=134.6

Q ss_pred             hhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcc
Q 039943           45 LMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPAC  124 (581)
Q Consensus        45 ~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (581)
                      .+..+.+++.+++|++..+.+++.+++.++.+++.+++|+++|| +|||+++++++++.+++.+++++++          
T Consensus       185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~----------  253 (742)
T TIGR01299       185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQ----------  253 (742)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence            34555667778999999999999999999999999999999999 7999999999999999999988887          


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHh
Q 039943          125 DQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVY  204 (581)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  204 (581)
                                   +++.++++|++.|++.|+..|...++++|.+|+       +.|++.+++...+..+|.++++.++.+
T Consensus       254 -------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~-------~~Rg~~~g~~~~~~~iG~ila~~la~~  313 (742)
T TIGR01299       254 -------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ-------EKRGEHLSWLCMFWMIGGIYAAAMAWA  313 (742)
T ss_pred             -------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         788899999999999999999999999999998       779999999999999999999987765


Q ss_pred             hhcc-------------ccchhhhHHHHHHHHHHHHHHHh
Q 039943          205 IQDN-------------LGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       205 i~~~-------------~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      +...             .+||+.|++.++..++.++..++
T Consensus       314 il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~  353 (742)
T TIGR01299       314 IIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF  353 (742)
T ss_pred             HHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            5432             36899888877766655544433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.93  E-value=2e-23  Score=226.07  Aligned_cols=411  Identities=12%  Similarity=0.064  Sum_probs=234.0

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccch
Q 039943           58 NMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWS  137 (581)
Q Consensus        58 ~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (581)
                      +.+..+.+++.+++.++..+++++.|+++|| +|||++++.+.++++++.++++++.....           +....+..
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~-----------~~~~~~~~  118 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGFT-----------SIGPDNTG  118 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhccccc-----------cccccchh
Confidence            8899999999999999999999999999999 79999999999999998887776420000           00001122


Q ss_pred             hHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhh--------ccc
Q 039943          138 QLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQ--------DNL  209 (581)
Q Consensus       138 ~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~--------~~~  209 (581)
                      ....++++|+++|++.|+..+...++++|++|+       ++|+++.++...+..+|..+++++++.+.        +.+
T Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-------~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~  191 (479)
T PRK10077        119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA-------HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD  191 (479)
T ss_pred             HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence            467788999999999999999999999999998       67999999999999999999987765543        357


Q ss_pred             cchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhccccccCccccccccCCCCCccccCCcchh
Q 039943          210 GWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLR  289 (581)
Q Consensus       210 g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (581)
                      |||+.|++.++..++..+..++. ++.++...++.+.++..+..    ++  ....          .+         ...
T Consensus       192 gWr~~f~~~~~~~~~~~~~~~~l-~~s~~~l~~~~~~~~~~~~~----~~--~~~~----------~~---------~~~  245 (479)
T PRK10077        192 GWRYMFASEAIPALLFLMLLYFV-PETPRYLMSRGKQEQAEGIL----RK--IMGN----------TL---------ATQ  245 (479)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHcCCHHHHHHHH----HH--HcCC----------hh---------HHH
Confidence            99999998877666655443332 22111000000111100000    00  0000          00         000


Q ss_pred             hhhhh-hhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHHHhhcC-C---ChhheecccCCCCCCC
Q 039943          290 CLNKA-CIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ-S---SFPVLQASTMDRHITP  364 (581)
Q Consensus       290 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~  364 (581)
                      .++.. ...+.+.                     +..+..+...............+.+ .   ...++.+... ...  
T Consensus       246 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~-~~~--  301 (479)
T PRK10077        246 ALQEIKHSLDHGR---------------------KTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIF-KTL--  301 (479)
T ss_pred             HHHHHHHHHHHhh---------------------hhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHH-HHc--
Confidence            00000 0000000                     0000000000000000000000111 0   0000000000 000  


Q ss_pred             CcccC-cccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Q 039943          365 NFEIP-SGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGIS  443 (581)
Q Consensus       365 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~  443 (581)
                      +++.. .........+..++..    .+..++.+|+++|       +.+..+.++++++++.+......           
T Consensus       302 g~~~~~~~~~~~~~~~~~~i~~----~~~g~l~dr~g~r-------~~~i~~~~~~~v~~~~l~~~~~~-----------  359 (479)
T PRK10077        302 GASTDIALLQTIIVGVINLTFT----VLAIMTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFYT-----------  359 (479)
T ss_pred             CCCCchHHHHHHHHHHHHHHHH----HHHHHHHHHhcCh-------HHHHHhHHHHHHHHHHHHHHHhc-----------
Confidence            00000 0011111111222222    2334466776655       56777777777777665543210           


Q ss_pred             CCCCCcccchHHHHHHHHHHHHHHHHH-HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Q 039943          444 DDPRAVVKMSAMWVLPYHVLSGLAMAF-NMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGK  522 (581)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~  522 (581)
                             ....++....+++.+.+... +.|..+.++.|.+|+++|+++.|+.+..+++++++++.+.+.+.+.      
T Consensus       360 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~------  426 (479)
T PRK10077        360 -------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKN------  426 (479)
T ss_pred             -------CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc------
Confidence                   11122233333444444433 3466788889999999999999999999999999998888766521      


Q ss_pred             CCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhhhccC
Q 039943          523 EGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCREEASEALDEKDG  576 (581)
Q Consensus       523 ~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (581)
                       +|..+   ..+....|++.++++++++++.+++.+|+|+++.+|.++..++..
T Consensus       427 -~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  476 (479)
T PRK10077        427 -SWLVA---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPET  476 (479)
T ss_pred             -cchhh---hccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhcc
Confidence             12111   111244677778888888888888888988888887776655543

>PRK12382 putative transporter; Provisional

Probab=99.93  E-value=3.9e-23  Score=217.97  Aligned_cols=373  Identities=15%  Similarity=0.058  Sum_probs=239.3

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      +.++.+.+..++..++.....+.+|.|+++++|+|..+.+++.+++.++..+++++.|+++|| +||||+++.+.+...+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~   93 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACGL   93 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHHH
Confidence            445666677777777777777888889999999999999999999999999999999999999 7999999999887776


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +.+........+.               ....+++.+++.|+++|++.+...+...+++.|.+|+       ++|+++.+
T Consensus        94 ~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~a~~  151 (392)
T PRK12382         94 AGLAYLLAAILPV---------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGP-------KHSGKVMS  151 (392)
T ss_pred             HHHHHHhhhcccc---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc-------cccchhhh
Confidence            6543332210000               0112678899999999999999889889999999987       56999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhcccccc
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLS  265 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (581)
                      +...+.++|..++|.+++++.+.+||++.+.+..+..++.+..   . ++.++.+++++...                  
T Consensus       152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~------------------  209 (392)
T PRK12382        152 WNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF---N-GTVRKVPAHAGERP------------------  209 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH---H-HhccCCCCCcccCc------------------
Confidence            9999999999999999999988899998766554433322211   1 11111111000000                  


Q ss_pred             CccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHH-HhHHhhHhHHHhhHHHHHh
Q 039943          266 SQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEEL-KALIKVIPLWSTGIMIAVT  344 (581)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  344 (581)
                                             +..                           + ..+.. +....   ..+....+...
T Consensus       210 -----------------------~~~---------------------------~-~~~~~~~~~~~---~~l~~~~~~~~  235 (392)
T PRK12382        210 -----------------------SLW---------------------------S-VVGLIWKPGLG---LALQGVGFAVI  235 (392)
T ss_pred             -----------------------hHH---------------------------H-HHHHHHHhHHH---HHHHHHHHhHH
Confidence                                   000                           0 00000 00000   00111111111


Q ss_pred             hcCCChhheecccCCCCCCCCcccCccccc-chhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHH
Q 039943          345 ISQSSFPVLQASTMDRHITPNFEIPSGSFG-IFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASM  423 (581)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~  423 (581)
                      ....+.++.+ .    ..      ....+. ....+..++..++    ..++.+|.++|       +.+..+..+.++++
T Consensus       236 ~~~~~~~~~~-~----~~------~~~~~~~~~~~~~~~~~~~~----~g~l~~r~g~~-------~~~~~~~~~~~~~~  293 (392)
T PRK12382        236 GTFVSLYFAS-K----GW------AMAGFTLTAFGGAFVLMRVL----FGWMPDRFGGV-------KVAIVSLLVETVGL  293 (392)
T ss_pred             HHHHHHHHHh-c----CC------chhHHHHHHHHHHHHHHHHH----HHHHHHhcCCC-------eehHHHHHHHHHHH
Confidence            1111122111 0    11      001111 1111112222222    33456665544       35556666666665


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHH
Q 039943          424 AAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVAS  503 (581)
Q Consensus       424 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~  503 (581)
                      .......                      +.+...+..++.+++.+...+.....+.+.+|++.||++.|+.+....+|+
T Consensus       294 ~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  351 (392)
T PRK12382        294 LLLWLAP----------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAY  351 (392)
T ss_pred             HHHHHcc----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            5443321                      334445566777888888788777788888999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhh
Q 039943          504 LVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACC  557 (581)
Q Consensus       504 ~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~  557 (581)
                      .+++.+.+.+.+..      +          ++..|.+.+++.+++.+..+...
T Consensus       352 ~ig~~~~g~l~~~~------g----------~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        352 GVSGPLAGMLATSF------G----------YPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHHHHHHHHh------C----------chHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999888743      2          46788888888888777766553

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.93  E-value=2.7e-23  Score=222.23  Aligned_cols=165  Identities=9%  Similarity=0.099  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHH
Q 039943           30 FIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVL  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~  109 (581)
                      ..++..++..+..+.+...+|.+ .+++|++..+.+++.+++.++..++.++.|+++|| +|||+++.++.++..++.++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~  104 (434)
T PRK11663         27 TMYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINIL  104 (434)
T ss_pred             HHHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHH
Confidence            33344444444444555555554 45799999999999999999999999999999999 79999999999999999999


Q ss_pred             HHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHH
Q 039943          110 LWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYV  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  189 (581)
                      +++++                       +++.+++.|++.|++.|...+...+++.|++|+       ++|+++.++++.
T Consensus       105 ~~~~~-----------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~-------~~rg~~~~~~~~  154 (434)
T PRK11663        105 FGFSS-----------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR-------TERGGWWAIWNT  154 (434)
T ss_pred             HHHHh-----------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH-------HHHHHHHHHHHH
Confidence            88887                       788888999999999999999999999999998       679999999999


Q ss_pred             HHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHH
Q 039943          190 SVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSA  226 (581)
Q Consensus       190 ~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~  226 (581)
                      +.++|..++|.+.+++.+.+|||+.|++.++..++..
T Consensus       155 ~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~  191 (434)
T PRK11663        155 AHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG  191 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            9999999999999999998999999998877655443

>PRK10054 putative transporter; Provisional

Probab=99.93  E-value=5.6e-23  Score=216.94  Aligned_cols=174  Identities=14%  Similarity=0.141  Sum_probs=153.6

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      +|.++.+....++...+.+.+.++++.|+++++|++..+.+++.+++.+++.++.++.|+++|| +|||+++..+.++..
T Consensus         6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~~   84 (395)
T PRK10054          6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAFA   84 (395)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHH
Confidence            4567778888889999999999999999999999999999999999999999999999999999 799999999999988


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      ++.+++.+++                       +.+.+++.|.+.|.+.+...+...++..|.+|+       ++|++++
T Consensus        85 ~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  134 (395)
T PRK10054         85 SGFIAIPLVN-----------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSS-------TSKTKIF  134 (395)
T ss_pred             HHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------hHHHHHH
Confidence            8888888877                       677777888888888888888899999999987       6799999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 039943          185 SWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       185 ~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      ++.+...++|.+++|.+++++.+ .+|+.+|++.++..++..+...
T Consensus       135 g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~  179 (395)
T PRK10054        135 SLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQ  179 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875 7999999988777666544433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.93  E-value=3.8e-23  Score=219.96  Aligned_cols=387  Identities=13%  Similarity=0.010  Sum_probs=241.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVV  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  108 (581)
                      ..++...++..+........+|.+. ++++.+..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++.+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~~   97 (417)
T PRK10489         20 RAVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGFI   97 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHHH
Confidence            3444455566666555555566555 5678899999999999999999999999999999 6999999998888777766


Q ss_pred             HHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHH
Q 039943          109 LLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYY  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (581)
                      ++......                  ...+++.+++.|++.|++.+...+...+++.|.+|+       ++|+++.++.+
T Consensus        98 ~~~~~~~~------------------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  152 (417)
T PRK10489         98 GLALNAFL------------------PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR-------ENLMQAGAITM  152 (417)
T ss_pred             HHHHHHHc------------------CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH-------HHHHHHHHHHH
Confidence            55432100                  011567788899999999888888889999999987       66999999999


Q ss_pred             HHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCC-CCChhhhHHHHHHHHHhhccccccCc
Q 039943          189 VSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKA-NTSLLTGLIQVLVASYKNRHIKLSSQ  267 (581)
Q Consensus       189 ~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (581)
                      ...++|..+||.+++++.+..+|++.|++.++..++..+..... ++.++++. +++..++                   
T Consensus       153 ~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~-------------------  212 (417)
T PRK10489        153 LTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PALPPPPQPREHPLRS-------------------  212 (417)
T ss_pred             HHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCCCCCCcccccchHH-------------------
Confidence            99999999999999999888899999988777665554433322 21110000 0000000                   


Q ss_pred             cccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHHHhhcC
Q 039943          268 TTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ  347 (581)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (581)
                                            ..+.                    +     ....+.+............... .....
T Consensus       213 ----------------------~~~~--------------------~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~  244 (417)
T PRK10489        213 ----------------------LLAG--------------------F-----RFLLASPVVGGIALLGGLLTMA-SAVRV  244 (417)
T ss_pred             ----------------------HHHH--------------------H-----HHHHcChHHHHHHHHHHHHHHH-HhHHH
Confidence                                  0000                    0     0000001111111010000011 11111


Q ss_pred             -CChhheecccCCCCCCCCcccCcccccch---hhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHH
Q 039943          348 -SSFPVLQASTMDRHITPNFEIPSGSFGIF---TIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASM  423 (581)
Q Consensus       348 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~  423 (581)
                       .+.+..+...          .+....+.+   ..+..++...+    ..++.+|       .+..+.+..+.++.++++
T Consensus       245 ~~p~~~~~~~g----------~~~~~~g~~~~~~~~g~~ig~~~----~~~l~~~-------~~~~~~l~~~~~~~~~~~  303 (417)
T PRK10489        245 LYPALADEVWQ----------MGAAQIGLLYAAVPLGAALGALT----SGWLAHS-------ARPGLLMLLSTLGSFLAV  303 (417)
T ss_pred             hhHHHHHhccC----------CChhHhHHHHHHHHHHHHHHHHH----HHHhhhc-------cCcchHHHHHHHHHHHHH
Confidence             2222221111          111112211   12222222222    2223333       223345566666666665


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHH
Q 039943          424 AAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVAS  503 (581)
Q Consensus       424 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~  503 (581)
                      +.+...                      .+.+......++.+++.+...+...+++.+.+|++.||++.|+.+....+|.
T Consensus       304 ~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~  361 (417)
T PRK10489        304 GLFGLM----------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGD  361 (417)
T ss_pred             HHHHcc----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhH
Confidence            544331                      1334445566777777777777777888899999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhccccccccchhh
Q 039943          504 LVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCREEASE  569 (581)
Q Consensus       504 ~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  569 (581)
                      .+++.+.+.+.+..+                +...+...+++.++..++.+...+++|++++||.+
T Consensus       362 ~~g~~l~G~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (417)
T PRK10489        362 AIGAALLGGLGAMMT----------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPE  411 (417)
T ss_pred             hHHHHHHHHHHHHhc----------------hhhHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            999999999987432                34566777777777777777777888877777653

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.92  E-value=1.2e-22  Score=221.35  Aligned_cols=180  Identities=16%  Similarity=0.054  Sum_probs=135.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhh-----cCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHH
Q 039943           24 GLRTLPFIIANEAFERMASMGLMPNMILYLCGE-----YNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGF   98 (581)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~   98 (581)
                      +++.+....+..+.+.+....+....+ .+.++     .+.+..+.+++.+.+.++..++.++.|+++|| +|||+++.+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~   91 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTK-MLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHH
Confidence            333444444555555554433333333 33332     24556678899999999999999999999999 799999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccch
Q 039943           99 GCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKG  178 (581)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~  178 (581)
                      +.+++.++.++++++.+..                 +..+...++++|++.|++.|...+..+++++|.+|+       +
T Consensus        92 ~~~~~~v~~~~~~~~~~~~-----------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~-------~  147 (502)
T TIGR00887        92 ELIIMIIATVASGLSPGSS-----------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATK-------K  147 (502)
T ss_pred             HHHHHHHHHHHHHHccCcc-----------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh-------h
Confidence            9999999998888765100                 011367899999999999999999999999999999       7


Q ss_pred             hhhHHHHHHHHHHhhHHHHHHHHHHhhhc-----------------------cccchhhhHHHHHHHHHHHHHH
Q 039943          179 ALQSYFSWYYVSVLASSMVAVTCIVYIQD-----------------------NLGWKVGFGVPAVISLLSALSF  229 (581)
Q Consensus       179 ~r~~~~~~~~~~~~~g~~~~p~~~~~i~~-----------------------~~g~~~~f~~~~~~~~i~~~~~  229 (581)
                      +|+++.++.+....+|..+++.+..++..                       .++||+.|.+.++..++.++..
T Consensus       148 ~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~  221 (502)
T TIGR00887       148 WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR  221 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999988765431                       2479999988777666554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.92  E-value=6.2e-23  Score=213.99  Aligned_cols=153  Identities=13%  Similarity=0.052  Sum_probs=124.6

Q ss_pred             hhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHh-hhcccCCCCcc
Q 039943           46 MPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLT-TILSQAQPPAC  124 (581)
Q Consensus        46 ~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  124 (581)
                      .....+.+++++|++.++.+++.+.+.+++.+++++.|+++|| +|||+++..++.....+.. .... .          
T Consensus        10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~-~~~~~~----------   77 (368)
T TIGR00903        10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAG-RLLDPF----------   77 (368)
T ss_pred             HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHH-HHHHhc----------
Confidence            3444456678999999999999999999999999999999999 6999987766555544433 2232 3          


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHh
Q 039943          125 DQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVY  204 (581)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  204 (581)
                                   ++..+++.|+++|++.+.. +...+.++|++|+       ++|++++++.+.+..+|..++++++++
T Consensus        78 -------------~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~-------~~r~~a~~~~~~~~~lG~~l~~~~~~~  136 (368)
T TIGR00903        78 -------------NYEWLLACQLLAALGQPFL-LNAFAPAASQIRE-------ERRDLVISLLSFAMYLGIIFALAAGLK  136 (368)
T ss_pred             -------------cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         6788999999999999864 5556667999998       679999999999999999999999999


Q ss_pred             hhccccchhhhHHHHHHHHHHHHHHHh
Q 039943          205 IQDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       205 i~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      +.+.+|||+.|++.+++.++..+.+..
T Consensus       137 l~~~~gWr~~f~~~~~l~~~~~~~~~~  163 (368)
T TIGR00903       137 IYTAGGLQLLIIPIAAVAAAGIILVLA  163 (368)
T ss_pred             HHHccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999877766555444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.92  E-value=5.4e-24  Score=214.02  Aligned_cols=176  Identities=14%  Similarity=0.095  Sum_probs=159.3

Q ss_pred             chHHHHHHHHHHHHHHHhhhhh---HHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMP---NMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCIT  102 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~---~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (581)
                      |.-+.+++..++...++|-..-   ...+++.++.++|.+|.|.+.+++.+++.++..+.|.++|| .+.|+.+.+++++
T Consensus        25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLil  103 (448)
T COG2271          25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLIL  103 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHH
Confidence            3347888888899999998664   45678888999999999999999999999999999999999 6999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhH
Q 039943          103 YLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS  182 (581)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (581)
                      .++..+++++++                       ++..+.+..++.|..+|...|.+...++.++++       ++||+
T Consensus       104 sai~nil~Gfs~-----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr-------~eRG~  153 (448)
T COG2271         104 SAIVNILFGFSP-----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR-------KERGT  153 (448)
T ss_pred             HHHHHHHHhhhh-----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc-------cccCc
Confidence            999999999998                       889999999999999999999999999999999       67999


Q ss_pred             HHHHHHHHHhhHHHHHHHHH--HhhhccccchhhhHHHHHHHHHHHHHHHhc
Q 039943          183 YFSWYYVSVLASSMVAVTCI--VYIQDNLGWKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       183 ~~~~~~~~~~~g~~~~p~~~--~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                      ..++.+.+.|+|+++.|++.  +++..+.+||..|++++++.++..+..+..
T Consensus       154 ~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~  205 (448)
T COG2271         154 WWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL  205 (448)
T ss_pred             eEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999  999998999999999999876655544443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.92  E-value=4.5e-22  Score=210.01  Aligned_cols=176  Identities=11%  Similarity=0.143  Sum_probs=152.4

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHH
Q 039943           20 NPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFG   99 (581)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~   99 (581)
                      ..|..|+.+..+.+..++.....|.....+|+ +.+++|+++++.++..+++.++..++.++.|+++|| +|||+++..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~   91 (394)
T PRK10213         14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILF   91 (394)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHH
Confidence            44556776666666666666666666666665 456899999999999999999999999999999999 7999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchh
Q 039943          100 CITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGA  179 (581)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  179 (581)
                      .++.+++.+++.+++                       +++.+++.|+++|++.+...|...+++.|++|+       ++
T Consensus        92 ~~~~~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~  141 (394)
T PRK10213         92 AVLLTLSCLLVSFAN-----------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPP-------RT  141 (394)
T ss_pred             HHHHHHHHHHHHHHC-----------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH-------hH
Confidence            999999998888877                       889999999999999999999999999999988       67


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHH
Q 039943          180 LQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSAL  227 (581)
Q Consensus       180 r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~  227 (581)
                      |+++.++...+.++|..++|.+++++.+.+|||+.|++.++..++..+
T Consensus       142 ~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        142 VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988765554433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.92  E-value=1.2e-22  Score=212.71  Aligned_cols=155  Identities=10%  Similarity=0.098  Sum_probs=139.5

Q ss_pred             hhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCccc
Q 039943           46 MPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACD  125 (581)
Q Consensus        46 ~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (581)
                      .....+++.+++|++..+.+++.+++.++..++.++.|+++|| +|||+++..+.++..++..+++++.           
T Consensus        13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~-----------   80 (399)
T TIGR00893        13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFAG-----------   80 (399)
T ss_pred             hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHHc-----------
Confidence            3445566888999999999999999999999999999999999 7999999999999999999988887           


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhh
Q 039943          126 QLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYI  205 (581)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i  205 (581)
                                  +++.+++.|++.|++.+...+...+++.|.+|+       ++|++.+++.....++|..++|.+++++
T Consensus        81 ------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l  141 (399)
T TIGR00893        81 ------------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA-------SERATAVSIFNSAQGLGGIIGGPLVGWI  141 (399)
T ss_pred             ------------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH-------HHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence                        788899999999999999999999999999998       7799999999999999999999999999


Q ss_pred             hccccchhhhHHHHHHHHHHHHHHHh
Q 039943          206 QDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       206 ~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      .+..+|++.|++.++..++..+...+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (399)
T TIGR00893       142 LIHFSWQWAFIIEGVLGIIWGVLWLK  167 (399)
T ss_pred             HHhCCchHHHHHHHHHHHHHHHHhhh
Confidence            88899999999887766655544443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.92  E-value=2.1e-22  Score=213.84  Aligned_cols=177  Identities=12%  Similarity=0.066  Sum_probs=148.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHH
Q 039943           24 GLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITY  103 (581)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (581)
                      +|+.++...+..+++......+ .+..+.+++++|++.++.+++.+++.+++.+++++.|+++|| +|||+++..+++++
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~   83 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVLW   83 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHHH
Confidence            4555555555555555544433 445558899999999999999999999999999999999999 79999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          104 LLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                      .++..++++++                       +.+.+++.|++.|++.+...|...+++.|++|+       ++|++.
T Consensus        84 ~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~rg~~  133 (412)
T TIGR02332        84 GIASTATMFAT-----------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPA-------YFRARA  133 (412)
T ss_pred             HHHHHHHHHhc-----------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH-------HHHHHH
Confidence            99999999987                       788899999999999999999999999999998       779999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhhc------cccchhhhHHHHHHHHHHHHHHHhc
Q 039943          184 FSWYYVSVLASSMVAVTCIVYIQD------NLGWKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       184 ~~~~~~~~~~g~~~~p~~~~~i~~------~~g~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                      .++++.+..+|..++|.+++++.+      ..|||+.|++.++..++..+...+.
T Consensus       134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~  188 (412)
T TIGR02332       134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFW  188 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999998864      3699999999877665544444333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.92  E-value=2.9e-22  Score=217.65  Aligned_cols=176  Identities=13%  Similarity=0.126  Sum_probs=131.5

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchh-hHHH-----HHHHHHHHHHHHHHHHHhhccccCchhhHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTA-GTNV-----LLIWTAATNFLPIIGAFLADSCVGRYPMIGFG   99 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-~~~i-----~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~   99 (581)
                      +.+....+..+++.+.+. +..+..+++.++++.+.++ .+++     .++..++..+++++.|+++|| +|||+++.++
T Consensus        16 ~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~   93 (490)
T PRK10642         16 KAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAIT   93 (490)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHH
Confidence            445555567777776654 4555666888887644322 1222     466778899999999999999 6999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchh
Q 039943          100 CITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGA  179 (581)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  179 (581)
                      +++++++.+++++++++.++               ......++++.|+++|++.|+..+...++++|++|+       ++
T Consensus        94 ~~l~~i~~~~~a~~~~~~~~---------------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~-------~~  151 (490)
T PRK10642         94 IVIMSISTFCIGLIPSYATI---------------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPD-------RK  151 (490)
T ss_pred             HHHHHHHHHHHHhcccHHHH---------------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCC-------CC
Confidence            99999999999998832110               000112488999999999999999999999999998       66


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHhhh--------ccccchhhhHHHHHHHHHH
Q 039943          180 LQSYFSWYYVSVLASSMVAVTCIVYIQ--------DNLGWKVGFGVPAVISLLS  225 (581)
Q Consensus       180 r~~~~~~~~~~~~~g~~~~p~~~~~i~--------~~~g~~~~f~~~~~~~~i~  225 (581)
                      |++..++...+..+|..+|+.+..++.        ..+|||++|++.++..+++
T Consensus       152 Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~  205 (490)
T PRK10642        152 RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIG  205 (490)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH
Confidence            999988888877888888876654432        2579999999876654443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.92  E-value=1.7e-22  Score=214.03  Aligned_cols=379  Identities=13%  Similarity=0.107  Sum_probs=240.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchh-----hHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTA-----GTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCI  101 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-----~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~  101 (581)
                      ....+.+..++..+++....+.+|.|.+ ++|++..+     .+++.+++.+...++.++.|+++|| +|||+++..+.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~   92 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHH
Confidence            3555666777788887778888888885 68888665     3888999999999999999999999 699999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhh
Q 039943          102 TYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQ  181 (581)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~  181 (581)
                      +..++.+++.+.+                       +++.+++.|++.|++.+ ..+...+++.|.+|+       ++|+
T Consensus        93 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~-------~~~~  141 (408)
T PRK09874         93 GMGIVMVLMGLAQ-----------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPR-------NKSG  141 (408)
T ss_pred             HHHHHHHHHHHHh-----------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCH-------hhhh
Confidence            9888888887776                       78889999999999865 567778888999887       6799


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhcc
Q 039943          182 SYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRH  261 (581)
Q Consensus       182 ~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (581)
                      +..++.+...++|..++|.+++.+.+..+|++.|++.+++.++..+...+..++..+++++++. .+ .+       +  
T Consensus       142 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-------~--  210 (408)
T PRK09874        142 WALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM-LH-MR-------E--  210 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh-hH-HH-------H--
Confidence            9999999999999999999999999889999999988877666554443332221110000000 00 00       0  


Q ss_pred             ccccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHh-HHHhhHH
Q 039943          262 IKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIP-LWSTGIM  340 (581)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  340 (581)
                                                  ...   ..                         ++.+....... .......
T Consensus       211 ----------------------------~~~---~~-------------------------~~~~~~~~~~~~~~~~~~~  234 (408)
T PRK09874        211 ----------------------------VVT---SL-------------------------KNPKLVLSLFVTTLIIQVA  234 (408)
T ss_pred             ----------------------------HHH---hC-------------------------cCCchHHHHHHHHHHHHHH
Confidence                                        000   00                         00000000000 0111111


Q ss_pred             HHHhhcC-CChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHH
Q 039943          341 IAVTISQ-SSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFS  419 (581)
Q Consensus       341 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~  419 (581)
                      ... ... .+.+............    .....+.....+..++..+.    ..++.||+++|       +.+..+.++.
T Consensus       235 ~~~-~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~l~~~~~~~~----~g~l~dr~g~~-------~~~~~~~~~~  298 (408)
T PRK09874        235 TGS-IAPILTLYVRELAGNVSNIA----FISGMIASVPGVAALLSAPR----LGKLGDRIGPE-------KILITALIFS  298 (408)
T ss_pred             HHH-HHHHHHHHHHHHhccchHHH----HHHHHHHHHHHHHHHHHHHH----HHHHHhccccc-------hhHHHHHHHH
Confidence            000 001 1111111000000000    00000111111122222222    23355555444       4555665555


Q ss_pred             HHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHH
Q 039943          420 TASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGM  499 (581)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~  499 (581)
                      .++++.....                      .+.+...+..++.+++.+...|.......+..|++.+|+..++.+...
T Consensus       299 ~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  356 (408)
T PRK09874        299 VLLLIPMSFV----------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFR  356 (408)
T ss_pred             HHHHHHHHHh----------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHH
Confidence            5544433321                      133444556677788888888888888888899999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 039943          500 SVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKA  559 (581)
Q Consensus       500 ~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~  559 (581)
                      .+|..+++.+.+.+.+..                ++...|++.+++.+++.+..+...++
T Consensus       357 ~~g~~~gp~~~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~~  400 (408)
T PRK09874        357 DIGNVTGPLMGAAISANY----------------GFRAVFLVTAGVVLFNAVYSWNSLRR  400 (408)
T ss_pred             HHHHHhhHHHHHHHHhhc----------------chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999887532                24778888888888887776665443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.91  E-value=3.9e-23  Score=223.17  Aligned_cols=158  Identities=11%  Similarity=0.010  Sum_probs=129.8

Q ss_pred             HHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCccccc
Q 039943           48 NMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQL  127 (581)
Q Consensus        48 ~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (581)
                      ...+.+.+++|++.++.+++.+++.+++.+++++.|+++|| +|||+++..++++..++....++....           
T Consensus        50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~-----------  117 (467)
T PRK09556         50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSAICMLGFGASLGS-----------  117 (467)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHHHHHHHHHHHHhc-----------
Confidence            34556778999999999999999999999999999999999 699999999888887777666653100           


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhc
Q 039943          128 RSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQD  207 (581)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~  207 (581)
                             ...+++.+++.|++.|++.+...|...++++|++|+       ++|+++.+++..+.++|.++++.+..++..
T Consensus       118 -------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~  183 (467)
T PRK09556        118 -------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPR-------RKRGRFLGFWNISHNLGGAGAGGVALWGAN  183 (467)
T ss_pred             -------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCc-------cceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence                   011788899999999999999999999999999998       669999999999999999999988877665


Q ss_pred             cc---cchhhhHHHHHHHHHHHHHHHh
Q 039943          208 NL---GWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       208 ~~---g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      ..   +|+..|.+.+++.++..+..++
T Consensus       184 ~~~~~~~~~~f~~~g~~~~~~~i~~~~  210 (467)
T PRK09556        184 YFFDGHVIGMFIFPSIIALIIGFIGLR  210 (467)
T ss_pred             hhccCcchhHHHHHHHHHHHHHHHHHH
Confidence            43   6898888877766554444333

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.91  E-value=2.8e-22  Score=215.76  Aligned_cols=152  Identities=18%  Similarity=0.263  Sum_probs=128.6

Q ss_pred             HHhhhhcCCc--------chhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 039943           51 LYLCGEYNME--------TTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPP  122 (581)
Q Consensus        51 ~yl~~~~~~s--------~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (581)
                      +.+..+++++        ..+.+++.+++.++..++.++.|+++|| +|||++++.+.+++.++.+++.+..+       
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~-------  123 (481)
T TIGR00879        52 ALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAF-------  123 (481)
T ss_pred             hcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence            3444555555        8999999999999999999999999999 79999999999999999888876551       


Q ss_pred             cccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHH
Q 039943          123 ACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCI  202 (581)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~  202 (581)
                                   ..+.+.+++.|++.|++.+...+...++++|.+|+       ++|+++.++.+.+.++|..+++.++
T Consensus       124 -------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       124 -------------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPK-------ALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             -------------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCCh-------hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence                         12456899999999999999999999999999998       6799999999999999999999998


Q ss_pred             ---HhhhccccchhhhHHHHHHHHHHHHHHH
Q 039943          203 ---VYIQDNLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       203 ---~~i~~~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                         +...+..+||+.|++.++..++..+..+
T Consensus       184 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~  214 (481)
T TIGR00879       184 SGKVSLNNTLGWRIPLGLQLIPAGLLFLGLF  214 (481)
T ss_pred             HHhhcCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence               6666778999999997665555544333

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.91  E-value=3.5e-22  Score=210.86  Aligned_cols=151  Identities=13%  Similarity=0.140  Sum_probs=131.7

Q ss_pred             hhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 039943           43 MGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPP  122 (581)
Q Consensus        43 ~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (581)
                      +.+.+.+| .+++++|+|..+.+++.+++.+++.+++++.|+++|| +|||+++..+..+++++.+++++++        
T Consensus        26 ~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a~--------   95 (393)
T PRK09705         26 TSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELYP--------   95 (393)
T ss_pred             hccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHCc--------
Confidence            44444444 5778999999999999999999999999999999999 7999999999999999999999998        


Q ss_pred             cccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHH
Q 039943          123 ACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCI  202 (581)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~  202 (581)
                                     ++..++++|+++|++.+...+...+++.|++|+        +|+++.+.+..+.++|..+++.++
T Consensus        96 ---------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~~~~~~g~~~g~~~~  152 (393)
T PRK09705         96 ---------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ--------RTPLVMGLWSAALMGGGGLGAAIT  152 (393)
T ss_pred             ---------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc--------cchhHHHHHHHHHHHHHHHHHHHH
Confidence                           778899999999999999999999999998863        489999999999999999999999


Q ss_pred             Hhhhccc-cchhhhHHHHHHHHHHH
Q 039943          203 VYIQDNL-GWKVGFGVPAVISLLSA  226 (581)
Q Consensus       203 ~~i~~~~-g~~~~f~~~~~~~~i~~  226 (581)
                      +++.++. +||+.+.+.++..++..
T Consensus       153 ~~l~~~~~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705        153 PWLVQHSETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            9988875 89998776555444433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.91  E-value=7.8e-22  Score=206.32  Aligned_cols=171  Identities=14%  Similarity=0.109  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHH-HHHHHHHHHHHH
Q 039943           32 IANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGF-GCITYLLGVVLL  110 (581)
Q Consensus        32 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~-~~~~~~~~~~~~  110 (581)
                      .+..++..++.....+.++.|+++++|.+..+.+++.+++.+...+..++.|+++|| +||||.++. +.++.+++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHH
Confidence            345667777777888999999999999999999999999999999999999999999 699887654 555556666777


Q ss_pred             HHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHH
Q 039943          111 WLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVS  190 (581)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  190 (581)
                      ++++                       +++.+++.|++.|.+.+...|...++..|..|+++     +.+....+..+..
T Consensus        82 ~~~~-----------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  133 (375)
T TIGR00899        82 AWNR-----------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG-----REAVMFSSVMRAQ  133 (375)
T ss_pred             Hhcc-----------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-----hhhHHHHHHHHHH
Confidence            7766                       67778888999988888888888888888876622     1222335777778


Q ss_pred             HhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh
Q 039943          191 VLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       191 ~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      .++|..++|.+++++.+..|||+.|++.+++.++..+....
T Consensus       134 ~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       134 ISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999899999999988876655544433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.91  E-value=1.4e-21  Score=207.25  Aligned_cols=158  Identities=18%  Similarity=0.195  Sum_probs=135.2

Q ss_pred             HHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCC
Q 039943           41 ASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQ  120 (581)
Q Consensus        41 ~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (581)
                      +...+.+.++. +.+++|.+..+.++..+++.+++.++.++.|+++|| +||||++..+.++..++.+++.+++      
T Consensus        28 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~------   99 (406)
T PRK15402         28 ANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVAFFILTCLAILLAQ------   99 (406)
T ss_pred             hhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHc------
Confidence            33334444544 557899999999999999999999999999999999 7999999999999999888888876      


Q ss_pred             CCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHH
Q 039943          121 PPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVT  200 (581)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~  200 (581)
                                       +.+.+++.|++.|++.+...+...+++.|.+|+       ++|.+..++......+|..++|.
T Consensus       100 -----------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~  155 (406)
T PRK15402        100 -----------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEE-------ADAIKITALMANVALLAPLLGPL  155 (406)
T ss_pred             -----------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhCh-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence                             677889999999999998888999999999988       56888888888888899999999


Q ss_pred             HHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 039943          201 CIVYIQDNLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       201 ~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      +++++.++.+|++.|++.+++.++..+...
T Consensus       156 i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK15402        156 VGAALIHVLPWRGMFVLFAALAALSFFGLW  185 (406)
T ss_pred             HHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence            999998888999999988777666555443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.91  E-value=4.2e-22  Score=214.19  Aligned_cols=157  Identities=13%  Similarity=0.040  Sum_probs=126.1

Q ss_pred             hHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccc
Q 039943           47 PNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQ  126 (581)
Q Consensus        47 ~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (581)
                      ....+|+.++ |++.++.+++.+++.++..+++++.|+++|| +|||++++.+.++.+++.+.+++....          
T Consensus        49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~~~----------  116 (452)
T PRK11273         49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWA----------  116 (452)
T ss_pred             HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhhcc----------
Confidence            3445577777 9999999999999999999999999999999 799999999999999988888776411          


Q ss_pred             cccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHH-HHHHHHHhh
Q 039943          127 LRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSM-VAVTCIVYI  205 (581)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~p~~~~~i  205 (581)
                               ..+...+++.|++.|++.+...|...+.+.|++|+       ++|+++.++++.+.++|.. .+|+++..+
T Consensus       117 ---------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~  180 (452)
T PRK11273        117 ---------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGLPPLLFLLGM  180 (452)
T ss_pred             ---------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh-------HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence                     11567788899999999999888888889999988       6799999999999888864 455544333


Q ss_pred             hccccchhhhHHHHHHHHHHHHHHHh
Q 039943          206 QDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       206 ~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      ....+||+.|++.+++.++..+...+
T Consensus       181 ~~~~gw~~~f~i~~~~~~~~~~l~~~  206 (452)
T PRK11273        181 AWFNDWHAALYMPAFAAILVALFAFA  206 (452)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            33459999999987766554443333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.91  E-value=1.1e-21  Score=209.85  Aligned_cols=173  Identities=18%  Similarity=0.191  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhcC---CcchhhHHHHHHHHHHH---HHHHHHHHHhhccccCchhhHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEYN---METTAGTNVLLIWTAAT---NFLPIIGAFLADSCVGRYPMIGFGCIT  102 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~~~~i~~~~~~~~---~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (581)
                      ....+..+++.+.... .+++.+++.++++   .+..+.+.+.+++..+.   .++.+++|+++|| +||||++..+.++
T Consensus        25 ~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~  102 (432)
T PRK10406         25 VGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCM  102 (432)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHH
Confidence            3333455666666544 6666778888874   55555444444444444   4999999999999 6999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhH
Q 039943          103 YLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS  182 (581)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (581)
                      +.++.+++++++++..               ....+...+++.|+++|++.|+..|...++++|.+|+       ++|++
T Consensus       103 ~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~-------~~rg~  160 (432)
T PRK10406        103 MCFGSLVIACLPGYET---------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVE-------GRKGF  160 (432)
T ss_pred             HHHHHHHHhhcCCchh---------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCC-------CcccH
Confidence            9999999998773211               0011345789999999999999999999999999998       56999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhh--------ccccchhhhHHHHHHHHHH
Q 039943          183 YFSWYYVSVLASSMVAVTCIVYIQ--------DNLGWKVGFGVPAVISLLS  225 (581)
Q Consensus       183 ~~~~~~~~~~~g~~~~p~~~~~i~--------~~~g~~~~f~~~~~~~~i~  225 (581)
                      ..+..+.+.+.|..+++++...+.        +.+|||++|++.++..++.
T Consensus       161 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        161 YASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            999888888888888887655543        2579999999877765544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.91  E-value=4.7e-22  Score=206.53  Aligned_cols=353  Identities=13%  Similarity=0.023  Sum_probs=227.3

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHH
Q 039943           31 IIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLL  110 (581)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~  110 (581)
                      ++...++..++.......+|.|.. +++.+..+.+++.+++.++..++.++.|+++|| +|||+++..+.++..++..+.
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHH
Confidence            344555566665555666676665 689999999999999999999999999999999 799999999998888877777


Q ss_pred             HHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHH
Q 039943          111 WLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVS  190 (581)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  190 (581)
                      .+.....                  ..+.+.+++.|++.|++.+...+...++++|.+|+       ++|++.+++.+..
T Consensus        82 ~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  136 (365)
T TIGR00900        82 PFVALLG------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE-------EQLTQANSLSQAV  136 (365)
T ss_pred             HHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHhHHHHH
Confidence            6654111                  12678899999999999999999999999999998       6799999999999


Q ss_pred             HhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhh-hHHHHHHHHHhhccccccCccc
Q 039943          191 VLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLT-GLIQVLVASYKNRHIKLSSQTT  269 (581)
Q Consensus       191 ~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  269 (581)
                      .++|..++|.+++++.+..||++.|++.++..++..+.......+.++++ ++++.+ +..+.                 
T Consensus       137 ~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------------  198 (365)
T TIGR00900       137 RSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS-EIQALSNAVLRD-----------------  198 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc-cccccchhHHHH-----------------
Confidence            99999999999999999899999999887766555444333221111100 000000 00000                 


Q ss_pred             cccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhH-HHhhHHHHHhhcC-
Q 039943          270 EEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPL-WSTGIMIAVTISQ-  347 (581)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-  347 (581)
                                          ..+..                         ....+.+.....+.. ............. 
T Consensus       199 --------------------~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (365)
T TIGR00900       199 --------------------TREGI-------------------------KFVLKNPLLRTLLLLALLFNLVFAPAIVAL  233 (365)
T ss_pred             --------------------HHhHH-------------------------HHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                00000                         000001111111111 1111111111111 


Q ss_pred             CChhheecccCCCCCCCCcccCcccccch---hhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHH
Q 039943          348 SSFPVLQASTMDRHITPNFEIPSGSFGIF---TIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMA  424 (581)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~  424 (581)
                      .+.+..+...          .+....+..   ..+..++...+    ..++.+|.++|       +.+..+.++.++++.
T Consensus       234 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~-------~~~~~~~~~~~~~~~  292 (365)
T TIGR00900       234 FPYVQSKYLG----------RGSTHYGWVLAAFGLGALLGALL----LGLLGRYFKRM-------ALMTGAIFVIGLAIL  292 (365)
T ss_pred             hHHHHHHHhC----------CchHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchh-------HHHHHHHHHHHHHHH
Confidence            2332221111          111112211   12222222222    22344554333       455555555555555


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHH
Q 039943          425 AWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASL  504 (581)
Q Consensus       425 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~  504 (581)
                      ......                    + +.+...+..++.+++.+...+....++.+.+|++.|+++.|+.+....++..
T Consensus       293 ~~~~~~--------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (365)
T TIGR00900       293 VVGLTP--------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWP  351 (365)
T ss_pred             HHHhhc--------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            444321                    1 2455566778888898888999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 039943          505 VASFIMNAVDE  515 (581)
Q Consensus       505 i~~~i~~~i~~  515 (581)
                      +++.+.+.+.|
T Consensus       352 ~g~~~~g~l~~  362 (365)
T TIGR00900       352 LGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHHHHH
Confidence            99999998876

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.90  E-value=5.1e-22  Score=213.50  Aligned_cols=149  Identities=16%  Similarity=0.089  Sum_probs=128.0

Q ss_pred             HHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccc
Q 039943           51 LYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSD  130 (581)
Q Consensus        51 ~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (581)
                      +.+.+++|++.++.+++.+.+.++..++.++.|+++|| +|||++++.+.++..++.+++++++                
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~----------------  105 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS----------------  105 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence            44567999999999999999999999999999999999 7999999999999999998888877                


Q ss_pred             cccccchhHHHHHH-HHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccc
Q 039943          131 CESATWSQLMLLYS-ALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNL  209 (581)
Q Consensus       131 ~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~  209 (581)
                             +.+.+++ .|++.|++.+...+...+++.+.++        ++|+++.++.+.+..+|..++|.+++++.+.+
T Consensus       106 -------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~--------~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~  170 (455)
T TIGR00892       106 -------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY--------RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF  170 (455)
T ss_pred             -------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH--------hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence                   5666654 5788999998876777788888884        35999999999999999999999999999989


Q ss_pred             cchhhhHHHHHHHHHHHHHHHh
Q 039943          210 GWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       210 g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      |||++|++.+++.+++.+..++
T Consensus       171 gwr~~f~~~~~~~~~~~v~~~~  192 (455)
T TIGR00892       171 GWRGSFLILGGLLLHCCVCGAL  192 (455)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988877655544333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.90  E-value=5e-22  Score=211.85  Aligned_cols=166  Identities=15%  Similarity=0.202  Sum_probs=143.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHH
Q 039943           24 GLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITY  103 (581)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (581)
                      +++.+....+..+.+.+..+.. .++.+++++++|+++.+.+++.+++.++..++.++.|+++|| +|||+++..+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~~   93 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHH
Confidence            3444555555555555555443 455567788999999999999999999999999999999999 79999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          104 LLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                      .++..+++++.                       +.+.+++.|++.|++.+...+...+++.|.+|+       ++|+++
T Consensus        94 ~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~-------~~r~~~  143 (426)
T PRK12307         94 SVGTGLSGLAS-----------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPK-------HLKSKA  143 (426)
T ss_pred             HHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH-------hHhhHh
Confidence            99999998887                       788899999999999999999999999999998       679999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHH
Q 039943          184 FSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVI  221 (581)
Q Consensus       184 ~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~  221 (581)
                      .++...+..+|..+++.+.+.+.+..+||+.|++.++.
T Consensus       144 ~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        144 SAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            99999999999999999999998889999999875543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.90  E-value=4.9e-21  Score=201.31  Aligned_cols=173  Identities=12%  Similarity=0.173  Sum_probs=149.1

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      +.++.+.+..+......+...+.+|. +++++|++.++.+++.+++.++..+++++.|+++|| +|||+++..+.++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHH
Confidence            34555666666666666666666654 567899999999999999999999999999999999 6999999999999999


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +.+++++++                       +++.+++.|++.|++.+...+...+++.|++|+       ++|++..+
T Consensus        81 ~~~l~~~~~-----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  130 (382)
T PRK10091         81 GNAMFTLSS-----------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP-------GKVTAAVA  130 (382)
T ss_pred             HHHHHHHhC-----------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh-------HHhhHHHH
Confidence            999999887                       788999999999999999888888999999887       66899999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      +...+..+|..++|.+++++.+..+||+.|++.++..++..+...
T Consensus       131 ~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  175 (382)
T PRK10091        131 GMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIY  175 (382)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999989999999998876655544433

>PRK09952 shikimate transporter; Provisional

Probab=99.90  E-value=2.5e-21  Score=207.28  Aligned_cols=177  Identities=15%  Similarity=0.151  Sum_probs=131.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhc--CCcchhhHHHH-----HHHHHHHHHHHHHHHHhhccccCchhhH
Q 039943           24 GLRTLPFIIANEAFERMASMGLMPNMILYLCGEY--NMETTAGTNVL-----LIWTAATNFLPIIGAFLADSCVGRYPMI   96 (581)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~~s~~~~~~i~-----~~~~~~~~i~~~~~G~laDr~~Grr~~~   96 (581)
                      ++|.+....+..+++.+....+....+.++.+++  +.++.+ +++.     ++..++..++.++.|+++|| +|||+++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l   97 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHH
Confidence            3455666666777777776655555555666655  677664 4443     23445566888889999999 6999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCccc
Q 039943           97 GFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKS  176 (581)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~  176 (581)
                      ..+.+++.++.+++++++++..               ....+...+++.|+++|++.|+..|...+++.|++|+      
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~------  156 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFST---------------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPK------  156 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHH---------------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCC------
Confidence            9999999999999999873211               0001123688899999999999999999999999998      


Q ss_pred             chhhhHHHHHHHHHHhhHHHHHHHHHHhhh--------ccccchhhhHHHHHHHHH
Q 039943          177 KGALQSYFSWYYVSVLASSMVAVTCIVYIQ--------DNLGWKVGFGVPAVISLL  224 (581)
Q Consensus       177 ~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~--------~~~g~~~~f~~~~~~~~i  224 (581)
                       ++|+...+....+..+|..++..+..++.        +.+|||++|++.++..++
T Consensus       157 -~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        157 -NKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence             56898888888888888888877666654        357999999987765443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.90  E-value=4.4e-22  Score=207.57  Aligned_cols=152  Identities=19%  Similarity=0.122  Sum_probs=132.3

Q ss_pred             hHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccc
Q 039943           47 PNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQ  126 (581)
Q Consensus        47 ~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (581)
                      +...+++.+++|++..+.+++.+++.++..++.++.|+++|| +|||+++..+.++..++.+++++++            
T Consensus        23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~------------   89 (377)
T TIGR00890        23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIAD------------   89 (377)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHHH------------
Confidence            445567888999999999999999999999999999999999 7999999999999999999999988            


Q ss_pred             cccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhh
Q 039943          127 LRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQ  206 (581)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~  206 (581)
                                 +.+.+++.|++.|++.+...+.....+.|.+|+        +|+++.++...+.++|..+++.+.+.+.
T Consensus        90 -----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~  150 (377)
T TIGR00890        90 -----------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD--------KRGLASGIIIGGYGLGSFILSPLITSVI  150 (377)
T ss_pred             -----------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc--------ccHHHHHHHHHhcchhHhHHHHHHHHHH
Confidence                       788899999999999998888888888888764        4899999999999999888777777777


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHH
Q 039943          207 DNLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       207 ~~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      +..|||+.|++.++..++..+...
T Consensus       151 ~~~~~~~~f~~~~~~~~~~~~~~~  174 (377)
T TIGR00890       151 NLEGVPAAFIYMGIIFLLVIVLGA  174 (377)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHH
Confidence            778999999998877665554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.90  E-value=1.4e-21  Score=211.84  Aligned_cols=173  Identities=15%  Similarity=0.192  Sum_probs=147.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      +..+.+..++..+... +.....+++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++..+.+++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDST-IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHH
Confidence            3344444555555443 34444556678999999999999999999999999999999999 799999999999999999


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      +++++++                       ++..+++.|+++|++.+...+...+++.|.+|+       ++|+++.+++
T Consensus        82 ~~~~~~~-----------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~  131 (485)
T TIGR00711        82 LLCGVAP-----------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP-------EKRGRAMAIW  131 (485)
T ss_pred             HHHhCcC-----------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH-------HHHHHHHHHH
Confidence            9998877                       788899999999999999999999999999998       7799999999


Q ss_pred             HHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhc
Q 039943          188 YVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       188 ~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                      +....+|..++|.+++++.++++|++.|++.++..++..+...+.
T Consensus       132 ~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  176 (485)
T TIGR00711       132 GLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFI  176 (485)
T ss_pred             HHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999877666555444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.90  E-value=1.3e-21  Score=206.47  Aligned_cols=173  Identities=13%  Similarity=0.152  Sum_probs=148.4

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHH
Q 039943           22 KGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCI  101 (581)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~  101 (581)
                      +.+|+.+....+..+.+.+..+.+....+ .+++++|++..+.+++.+++.++..++.++.|+++|| +|||++++.+.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~   85 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTSIV   85 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence            45566666666777777776665555444 6678999999999999999999999999999999999 699999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhh
Q 039943          102 TYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQ  181 (581)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~  181 (581)
                      +.+++.+++.+++                       +++.+++.|++.|++.+...+...+++.|.+|+       ++|+
T Consensus        86 ~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~~~  135 (405)
T TIGR00891        86 LFSAGTLACGFAP-----------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPK-------HLRN  135 (405)
T ss_pred             HHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCCh-------hhhh
Confidence            9999998888877                       788899999999999999999999999999998       6699


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhhcccc--chhhhHHHHHHHHHHH
Q 039943          182 SYFSWYYVSVLASSMVAVTCIVYIQDNLG--WKVGFGVPAVISLLSA  226 (581)
Q Consensus       182 ~~~~~~~~~~~~g~~~~p~~~~~i~~~~g--~~~~f~~~~~~~~i~~  226 (581)
                      ++.++.+.+..+|..+++.+++.+.+..+  |++.|++.++..++.+
T Consensus       136 ~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       136 KASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998887665  9999987665544443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.90  E-value=1.9e-21  Score=211.58  Aligned_cols=169  Identities=12%  Similarity=0.151  Sum_probs=145.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH
Q 039943           23 GGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCIT  102 (581)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (581)
                      .+|+.+..+.+..++..+....+ ..+.+++.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLI-TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence            44555555666666666655444 444456778999999999999999999999999999999999 6999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhH
Q 039943          103 YLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS  182 (581)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (581)
                      .+++.+++.++.                       +++.+++.|++.|++.+...+...+++.|.+|+       ++|++
T Consensus        95 ~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~  144 (496)
T PRK03893         95 FSVGTLACGFAP-----------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK-------HLRNK  144 (496)
T ss_pred             HHHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHH
Confidence            999999988887                       788899999999999999999999999999998       77999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHH
Q 039943          183 YFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISL  223 (581)
Q Consensus       183 ~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~  223 (581)
                      ..++.+.+.++|..++|.+.+++.+.++|++.|++.++..+
T Consensus       145 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~  185 (496)
T PRK03893        145 ASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPII  185 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987544433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.90  E-value=2.6e-21  Score=208.91  Aligned_cols=147  Identities=11%  Similarity=0.101  Sum_probs=130.1

Q ss_pred             hcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCccccccccccccc
Q 039943           56 EYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESAT  135 (581)
Q Consensus        56 ~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (581)
                      +++++..+.+++.+.+.+++.++++++|+++|| +|||+++..+.++..++.+++.++.                     
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~---------------------  127 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAA---------------------  127 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHH---------------------
Confidence            689999999999999999999999999999999 7999999999999888887776543                     


Q ss_pred             chhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccc-cchhh
Q 039943          136 WSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNL-GWKVG  214 (581)
Q Consensus       136 ~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~-g~~~~  214 (581)
                      ..+...+++.|+++|++.+...|....+++|++|+       ++|+++.++.+.+.++|..++|++++++.+.. ||++.
T Consensus       128 ~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~  200 (465)
T TIGR00894       128 GGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPP-------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI  200 (465)
T ss_pred             HcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence            11467789999999999999999999999999998       67999999999999999999999999999884 99999


Q ss_pred             hHHHHHHHHHHHHHHHh
Q 039943          215 FGVPAVISLLSALSFFL  231 (581)
Q Consensus       215 f~~~~~~~~i~~~~~~~  231 (581)
                      |++.++..++..+.++.
T Consensus       201 f~i~~~~~~~~~~~~~~  217 (465)
T TIGR00894       201 FYVFGIVGCAWSLLWFV  217 (465)
T ss_pred             hhhhhHHHHHHHHHHHH
Confidence            99988876665554444

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.90  E-value=4.8e-22  Score=205.50  Aligned_cols=166  Identities=19%  Similarity=0.293  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHH
Q 039943           32 IANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLW  111 (581)
Q Consensus        32 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~  111 (581)
                      ++..++..+......+.++.++.+++|.+..+.+++.+++.++..++.++.|+++|| +|||+++..+.++.+++..++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhh
Confidence            345556666666666667668888999999999999999999999999999999999 7999999999999999966666


Q ss_pred             HhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHH
Q 039943          112 LTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSV  191 (581)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (581)
                      +++                       +.+.+++.|++.|++.+...+...+++.|.+|+       ++|++.+++.+...
T Consensus        81 ~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~  130 (352)
T PF07690_consen   81 FAS-----------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPP-------EERGRAFGILSAGF  130 (352)
T ss_dssp             HHC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-------CCHHHHHHHHHHHH
T ss_pred             hhh-----------------------hHHHHhhhccccccccccccccccccccccchh-------hhhhhccccccchh
Confidence            654                       556899999999999999999999999999998       56999999999999


Q ss_pred             hhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHH
Q 039943          192 LASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALS  228 (581)
Q Consensus       192 ~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~  228 (581)
                      ++|..++|.+++++.+..+|++.|++.++..++..+.
T Consensus       131 ~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  131 SLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            9999999999999998899999999998887777654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.90  E-value=3.7e-21  Score=208.00  Aligned_cols=173  Identities=9%  Similarity=0.019  Sum_probs=134.1

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      +.+....+..++..+..+...+.+ +++.+++|++.++.+++.+.+.+++.++++++|+++|| +|||+++..+.++..+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~  113 (476)
T PLN00028         36 RAFHLSWISFFTCFVSTFAAAPLL-PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTAP  113 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHH
Confidence            334444444445555555544444 46678999999999999999999999999999999999 7999999999999999


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +.+++++++                       +...+++.|++.|++.+... ....+++|++|+       ++|+++++
T Consensus       114 ~~~~~~~~~-----------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~-------~~rg~a~g  162 (476)
T PLN00028        114 AVFCMSLVS-----------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNG-------KIVGTANG  162 (476)
T ss_pred             HHHHHHHhc-----------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcCh-------hheeHHHH
Confidence            988888877                       67788889999999988754 355678999998       67999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhc---------cccchhhhHHHHHHHHHHHHHHHh
Q 039943          186 WYYVSVLASSMVAVTCIVYIQD---------NLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~---------~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      +.+...++|..+++.+.+.+..         ..|||+.|++.+++.++..+...+
T Consensus       163 ~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        163 IAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9888778888877766655422         248999999988876655444433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.90  E-value=1.7e-20  Score=196.79  Aligned_cols=175  Identities=15%  Similarity=0.135  Sum_probs=147.0

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      .|.++.+.+..+...++.....+.+| .+.+++|.+.++.+++.+++.++..++.++.|+++|| +|||+++..+.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~   81 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFA   81 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHH
Confidence            34444444444445555444444444 5667899999999999999999999999999999999 799999999999999


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      ++.+++.+++                       +.+.+++.|++.|++.+...+...+++.|.+|+       ++|++.+
T Consensus        82 ~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  131 (385)
T TIGR00710        82 LSSLGLALSN-----------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPG-------EELSRIY  131 (385)
T ss_pred             HHHHHHHHHc-----------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc-------HHHHHHH
Confidence            9999888877                       778899999999999999999999999999997       6799999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh
Q 039943          185 SWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       185 ~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      ++.+....+|..++|.+++++.+..+|++.|++.++..++..+...+
T Consensus       132 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       132 SILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999899999999887766655544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.90  E-value=1.9e-22  Score=204.74  Aligned_cols=180  Identities=13%  Similarity=0.171  Sum_probs=161.0

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHH
Q 039943           22 KGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCI  101 (581)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~  101 (581)
                      +..++.+..+.+.++++++.-|.+...+ .-.++.+|+++++.|++..++.+..+++.|+.|+++|| +.||+++.+|.+
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~  106 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIF  106 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHH
Confidence            3445556777788888888888776644 46778999999999999999999999999999999999 699999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhh
Q 039943          102 TYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQ  181 (581)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~  181 (581)
                      ++.++.+..+++.                       .++++.+.|.+.|+|.+.+.|.++++++|.||.       .+|+
T Consensus       107 iW~~Av~~~~fs~-----------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~-------~~Rs  156 (493)
T KOG1330|consen  107 IWTLAVFASGFSN-----------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD-------DKRS  156 (493)
T ss_pred             HHHHHHHHHHHHH-----------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcc-------hhhh
Confidence            9999999999998                       899999999999999999999999999999998       7799


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhhcccc-chhhhHHHHHHHHHHHHHHHhcC
Q 039943          182 SYFSWYYVSVLASSMVAVTCIVYIQDNLG-WKVGFGVPAVISLLSALSFFLAS  233 (581)
Q Consensus       182 ~~~~~~~~~~~~g~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~i~~~~~~~~~  233 (581)
                      +.++++|++..+|.++|.+++..+.+..+ |||+|.+.+++.++..++.++..
T Consensus       157 ~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~  209 (493)
T KOG1330|consen  157 RVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFV  209 (493)
T ss_pred             HHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhc
Confidence            99999999999999999999999988766 99999999998877766555543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.90  E-value=1.2e-20  Score=199.06  Aligned_cols=164  Identities=20%  Similarity=0.188  Sum_probs=136.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~  106 (581)
                      ..+.+.+..++..++.......++.. .++++.+..+.+++.+.+.+.+.++.+++|+++|| +||||+++++.++++++
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~   81 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLG   81 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHH
Confidence            34556666777777655555555554 57899999999999999999999999999999999 79999999999999988


Q ss_pred             HHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHH
Q 039943          107 VVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSW  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (581)
                      .+.+.++.                       +.   ++.|+++|++.+...|+..+++.|++|+       ++|+++.++
T Consensus        82 ~~~~~~~~-----------------------~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~-------~~~~~a~~~  128 (393)
T PRK11195         82 CLLMLFGI-----------------------HP---LLAYGLVGIGAAAYSPAKYGILTELLPG-------EKLVKANGW  128 (393)
T ss_pred             HHHHHHHH-----------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHH
Confidence            88776655                       32   6789999999999999999999999998       779999999


Q ss_pred             HHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHH
Q 039943          187 YYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSA  226 (581)
Q Consensus       187 ~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~  226 (581)
                      .....++|..+||.++|++.+. .|+..+.+.+...+++.
T Consensus       129 ~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~  167 (393)
T PRK11195        129 MEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAA  167 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999874 47767666555444443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.90  E-value=3.5e-21  Score=198.46  Aligned_cols=346  Identities=16%  Similarity=0.216  Sum_probs=250.8

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHH
Q 039943           30 FIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVL  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~  109 (581)
                      .+.+..++..+..+...+..+.|. +++|.+..+.+++.+...++..++.++.|+++|| +|||+.+..+.++..++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHH
Confidence            345566677777777777777776 4679999999999999999999999999999999 79999999999999999999


Q ss_pred             HHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHH
Q 039943          110 LWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYV  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  189 (581)
                      +.+.+                       +.+.+++.|++.|++.+...+...+++.|.+|+       ++|++.+++.+.
T Consensus        81 ~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  130 (352)
T cd06174          81 LAFAS-----------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP-------KERGRALGLFSA  130 (352)
T ss_pred             HHHhc-----------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCc-------cchhhhhhHHHH
Confidence            88876                       788899999999999999999999999999998       569999999999


Q ss_pred             HHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhccccccCccc
Q 039943          190 SVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTT  269 (581)
Q Consensus       190 ~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (581)
                      ..++|..++|.+++++.+..+|++.|++.++..++..+...+..             +                      
T Consensus       131 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~----------------------  175 (352)
T cd06174         131 GFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------R----------------------  175 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------H----------------------
Confidence            99999999999999999988999999988877666655443321             0                      


Q ss_pred             cccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHHHhhcC-C
Q 039943          270 EEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ-S  348 (581)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  348 (581)
                                                                               ..................+.. .
T Consensus       176 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  198 (352)
T cd06174         176 ---------------------------------------------------------LLLLLALAFFLLSFGYYGLLTYL  198 (352)
T ss_pred             ---------------------------------------------------------HHHHHHHHHHHHHhHHHHHHHHH
Confidence                                                                     000000000000000011111 1


Q ss_pred             ChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchH-HHHHHHHHHHHHHHHHH
Q 039943          349 SFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQ-RMGIGLLFSTASMAAWA  427 (581)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~-~~~~g~~~~~~~~~~~~  427 (581)
                      +.+..+..+.+..       ..........+...+..++    ..++.+|.++|       + .+..+..+..++.....
T Consensus       199 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~  260 (352)
T cd06174         199 PLYLQEVLGLSAA-------EAGLLLSLFGLGGILGALL----GGLLSDRLGRR-------RLLLLIGLLLAALGLLLLA  260 (352)
T ss_pred             HHHHHHhcCCCHH-------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHH
Confidence            1111111000000       0111222233333333333    33466776655       3 56677777777766555


Q ss_pred             HHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHH
Q 039943          428 ITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVAS  507 (581)
Q Consensus       428 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~  507 (581)
                      ...                      +.+......++.+++.+...+....++.+..|++.|++..|+.+....+++.+++
T Consensus       261 ~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  318 (352)
T cd06174         261 LAP----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGP  318 (352)
T ss_pred             Hhc----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            421                      3556677788899999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 039943          508 FIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLA  555 (581)
Q Consensus       508 ~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~  555 (581)
                      .+.+.+.+..                ++...|++.+++.+++.+..+.
T Consensus       319 ~i~g~l~~~~----------------~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         319 LLAGLLLDTG----------------GYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HHHHHHhccc----------------CcchHHHHHHHHHHHHHHHhee
Confidence            9999887522                2366788888888877766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03699 putative transporter; Provisional

Probab=99.90  E-value=6.1e-21  Score=201.50  Aligned_cols=173  Identities=13%  Similarity=0.086  Sum_probs=143.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHH
Q 039943           24 GLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITY  103 (581)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (581)
                      ++|..+...+..++.......+-..+|. +.+++|+|.++.+++.+.+.+++.++.++.|+++|| +|||+++..+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~~   82 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFALM   82 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Confidence            3455566656666666655545455554 567899999999999999999999999999999999 79999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          104 LLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                      .++.+++.+++                       +++.+++.|++.|++.|...+...+++.|.+|+       ++|++.
T Consensus        83 ~i~~~l~~~~~-----------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~  132 (394)
T PRK03699         83 ILAVAGLMFSH-----------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEG-------KQRGSR  132 (394)
T ss_pred             HHHHHHHHHcc-----------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhccc-------chHHHH
Confidence            99999888877                       788899999999999999999999999999987       569999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhhc-cccchhhhHHHHHHHHHHHHH
Q 039943          184 FSWYYVSVLASSMVAVTCIVYIQD-NLGWKVGFGVPAVISLLSALS  228 (581)
Q Consensus       184 ~~~~~~~~~~g~~~~p~~~~~i~~-~~g~~~~f~~~~~~~~i~~~~  228 (581)
                      .+..+....+|+.++|.+.+++.. ..|||+.|.+.++..++..+.
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        133 LLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            988888888999999998888754 579999999877765554433

>TIGR00898 2A0119 cation transport protein

Probab=99.89  E-value=3.1e-21  Score=210.45  Aligned_cols=147  Identities=14%  Similarity=0.128  Sum_probs=129.9

Q ss_pred             HHhhhhcCCc---chhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCccccc
Q 039943           51 LYLCGEYNME---TTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQL  127 (581)
Q Consensus        51 ~yl~~~~~~s---~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (581)
                      +.+.++++++   ..+.+++.+++.++..++.++.|+++|| +|||++++++.++..++.++.++++             
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~~-------------  178 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFSP-------------  178 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHcc-------------
Confidence            3466789999   8999999999999999999999999999 7999999999999999999988887             


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhc
Q 039943          128 RSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQD  207 (581)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~  207 (581)
                                +++.+++.|++.|++.++..+...+++.|.+|+       ++|+...++...+..+|..++|.++..+.+
T Consensus       179 ----------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  241 (505)
T TIGR00898       179 ----------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPK-------KQRAIVGTLIQVFFSLGLVLLPLVAYFIPD  241 (505)
T ss_pred             ----------cHHHHHHHHHHHHhhccchHHHHHHHhheecCh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence                      788999999999999999999999999999998       669999999888889999999988776643


Q ss_pred             cccchhhhHHHHHHHHHHHHHHHh
Q 039943          208 NLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       208 ~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                         ||+.|++.++..++..+..++
T Consensus       242 ---wr~~~~~~~i~~~~~~~~~~~  262 (505)
T TIGR00898       242 ---WRWLQLAVSLPTFLFFLLSWF  262 (505)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHh
Confidence               999999888776665554433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.89  E-value=1.4e-20  Score=197.89  Aligned_cols=156  Identities=10%  Similarity=0.018  Sum_probs=137.9

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      .|.++.+++..++..++...+.+.+|.|+. ++|.|..+.|++.+.+.++..+++++.|+++|| +|||+++..+.++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHH
Confidence            345778888888888888778888888876 789999999999999999999999999999999 799999999999999


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      ++...+++++                       +++.+++.|++.|++.+...|...+.+.+..++       ++|++.+
T Consensus        83 ~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  132 (381)
T PRK03633         83 AGCAGLGLMV-----------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS-------RNRGRLL  132 (381)
T ss_pred             HHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHH
Confidence            9998888877                       788899999999999999888888888888877       6699999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhhccccch
Q 039943          185 SWYYVSVLASSMVAVTCIVYIQDNLGWK  212 (581)
Q Consensus       185 ~~~~~~~~~g~~~~p~~~~~i~~~~g~~  212 (581)
                      +.++.+.++|..+||.+++++.+...+.
T Consensus       133 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633        133 AAYMMVYYLGTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccch
Confidence            9999999999999999999987754333

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.89  E-value=1.8e-20  Score=197.91  Aligned_cols=174  Identities=13%  Similarity=0.121  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHH-HHHHHHHHHHHhhccccCchhhHH-HHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTA-ATNFLPIIGAFLADSCVGRYPMIG-FGCITYLL  105 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~-~~~i~~~~~G~laDr~~Grr~~~~-~~~~~~~~  105 (581)
                      .+..++..++..+....+.+.++.|+++++|.+.++.|++.+...+ +..++++++|+ +|| +||||.++ .+.++..+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~~~~   94 (393)
T PRK15011         17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLLGVL   94 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHHHHH
Confidence            4556666888888888888999999999999999999999876655 55566666666 999 69998754 45555556


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +..+.++++                       +++.+++.+.+.+...+...|...++..|..++++     +..+...+
T Consensus        95 ~~~~~~~~~-----------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  146 (393)
T PRK15011         95 ACTLFAWNR-----------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG-----REAVMFSS  146 (393)
T ss_pred             HHHHHHHhh-----------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc-----chHHHHHH
Confidence            666666666                       56665554444444445667888888888665522     12234456


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      +.+.+.++|..+||.+++++.++.|||..|++.++..++..+...+
T Consensus       147 ~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        147 FLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            7888899999999999999999899999999888766655544443

>TIGR00897 2A0118 polyol permease family

Probab=99.89  E-value=4.1e-20  Score=195.73  Aligned_cols=170  Identities=12%  Similarity=0.107  Sum_probs=139.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH
Q 039943           23 GGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCIT  102 (581)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (581)
                      ..||.+....+..++..+..+...+++++++ +++|++.++.+++.+.+.++..++.++.|+++|| +||||++..+.++
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~   87 (402)
T TIGR00897        10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLL   87 (402)
T ss_pred             CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHH
Confidence            3356777778888888888877788888888 5789999999999999999999999999999999 7999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhH
Q 039943          103 YLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS  182 (581)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (581)
                      ..++.+++.....                   ...+.+.+++.|++.|++.+...+...+.+.+.+|+       ++|++
T Consensus        88 ~~~~~~~~~~~~~-------------------~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~-------~~~g~  141 (402)
T TIGR00897        88 WCVGHAAFIVFGL-------------------GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ-------DNLSS  141 (402)
T ss_pred             HHHHHHHHHHHhc-------------------cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH-------HHHHH
Confidence            8888765532110                   011567788899999999888878788888898887       67999


Q ss_pred             HHHHHHHHHhhHH-HHHHHHHHhhhccccchhhhHHHHH
Q 039943          183 YFSWYYVSVLASS-MVAVTCIVYIQDNLGWKVGFGVPAV  220 (581)
Q Consensus       183 ~~~~~~~~~~~g~-~~~p~~~~~i~~~~g~~~~f~~~~~  220 (581)
                      +.++.+.+.++|. .++|++++++.+..||+..++....
T Consensus       142 ~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~  180 (402)
T TIGR00897       142 AVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA  180 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            9999999999996 5899999999888887666555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.89  E-value=9.6e-20  Score=193.44  Aligned_cols=148  Identities=16%  Similarity=0.203  Sum_probs=132.9

Q ss_pred             HhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCccccccccc
Q 039943           52 YLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDC  131 (581)
Q Consensus        52 yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (581)
                      .+.+++|.+.++.++..+++.+++.+++++.|+++|| +|||++++.+.+++.++.+++.+++                 
T Consensus        41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~-----------------  102 (413)
T PRK15403         41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFTT-----------------  102 (413)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHcC-----------------
Confidence            3677999999999999999999999999999999999 7999999999999999999998887                 


Q ss_pred             ccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccc
Q 039943          132 ESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGW  211 (581)
Q Consensus       132 ~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~  211 (581)
                            +++.++++|+++|++.+...+...+++.|.+|+       ++|++.+++.....++|..+||++++++.++.||
T Consensus       103 ------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw  169 (413)
T PRK15403        103 ------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQ-------TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHW  169 (413)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence                  788899999999999987777778889999988       6689999999999999999999999999988899


Q ss_pred             hhhhHHHHHHHHHHHHHHH
Q 039943          212 KVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       212 ~~~f~~~~~~~~i~~~~~~  230 (581)
                      |+.|++.++..+++.+...
T Consensus       170 ~~~f~~~~~~~~i~~~~~~  188 (413)
T PRK15403        170 KVLFAIIAVMGLIAFVGLL  188 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999998887666655433

>TIGR00895 2A0115 benzoate transport

Probab=99.89  E-value=1.2e-20  Score=198.37  Aligned_cols=172  Identities=17%  Similarity=0.138  Sum_probs=142.6

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      |+.+....+..+......+ ...+..+++.+++|++..+.+++.+++.++..++.++.|+++|| +|||+++..+.++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~   93 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLFS   93 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHHH
Confidence            3334444444444444443 33444556677899999999999999999999999999999999 799999999999999


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      ++.+++.++.                       +.+.+++.|++.|++.+...+...+++.|.+|+       ++|++..
T Consensus        94 ~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~  143 (398)
T TIGR00895        94 VFTLLCALAT-----------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK-------RFRGTAV  143 (398)
T ss_pred             HHHHHHHHcc-----------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCH-------HhhchhH
Confidence            8888888776                       677889999999999999999999999999988       6799999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHH
Q 039943          185 SWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALS  228 (581)
Q Consensus       185 ~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~  228 (581)
                      ++...+..+|..++|.+++++.+..||++.|++.+++.++..+.
T Consensus       144 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  187 (398)
T TIGR00895       144 GLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLL  187 (398)
T ss_pred             hhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHH
Confidence            99999999999999999999999899999999886554444433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.88  E-value=5.5e-21  Score=204.72  Aligned_cols=156  Identities=13%  Similarity=0.056  Sum_probs=129.0

Q ss_pred             HHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCccccc
Q 039943           48 NMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQL  127 (581)
Q Consensus        48 ~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (581)
                      ...+++++ +|++.++.+++.+++.++..++.++.|+++|| +|||+++..+.++..++.+++.+.++..          
T Consensus        48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~----------  115 (438)
T TIGR00712        48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVPWAT----------  115 (438)
T ss_pred             hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhcccccc----------
Confidence            34456765 59999999999999999999999999999999 7999999999999888887776653111          


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhh-
Q 039943          128 RSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQ-  206 (581)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~-  206 (581)
                               .+...+++.|++.|++.|...+.....+.|++|+       ++|+++.++++.+.++|..++|.+.+... 
T Consensus       116 ---------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~-------~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~  179 (438)
T TIGR00712       116 ---------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQ-------SERGTIVSIWNCAHNIGGGIPPLLVLLGMA  179 (438)
T ss_pred             ---------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCc-------ccchhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence                     1566778889999999999999899999999988       66999999999999999999988777644 


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHh
Q 039943          207 DNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       207 ~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      +..+||+.|++.+++.++..+...+
T Consensus       180 ~~~~w~~~f~~~~~~~~i~~~~~~~  204 (438)
T TIGR00712       180 WFNDWHAALYFPAICAIIVALFAFA  204 (438)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999988876665444433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.88  E-value=2.7e-20  Score=199.17  Aligned_cols=172  Identities=13%  Similarity=0.103  Sum_probs=127.1

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHH-HHHHH-----HHHHHHHHHHHhhccccCchhhHHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVL-LIWTA-----ATNFLPIIGAFLADSCVGRYPMIGF   98 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~-~~~~~-----~~~i~~~~~G~laDr~~Grr~~~~~   98 (581)
                      ++......+..+++.+.... ...+.+.+.++++.+.++.+... +...+     ...+++++.|+++|| +|||++++.
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~   91 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFL-FGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIV   91 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHH
Confidence            34445555566666665544 44555578889999887765443 32222     224678999999999 799999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccch
Q 039943           99 GCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKG  178 (581)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~  178 (581)
                      +.+++.++.+++++++++...               .......+++.|+++|++.+...+...++++|++|+       +
T Consensus        92 ~~~~~~~~~~l~~~~~~~~~~---------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~-------~  149 (434)
T PRK15075         92 TLSIMASGTLLIAFVPGYATI---------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP-------G  149 (434)
T ss_pred             HHHHHHHHHHHHHhCCcHHHH---------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc-------c
Confidence            999999999999998721100               000012578899999999999999999999999998       6


Q ss_pred             hhhHHHHHHHHHHhhHHHHHHHHHHhhh--------ccccchhhhHHHHH
Q 039943          179 ALQSYFSWYYVSVLASSMVAVTCIVYIQ--------DNLGWKVGFGVPAV  220 (581)
Q Consensus       179 ~r~~~~~~~~~~~~~g~~~~p~~~~~i~--------~~~g~~~~f~~~~~  220 (581)
                      +|++..++.....++|..+++.+++.+.        +.+|||++|++.++
T Consensus       150 ~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        150 RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            6999999988888888888887777652        46899999987544

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.88  E-value=2.7e-20  Score=203.20  Aligned_cols=424  Identities=12%  Similarity=0.111  Sum_probs=254.0

Q ss_pred             hhhhHHHHHhhhhc-----CCcc--hhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhc
Q 039943           44 GLMPNMILYLCGEY-----NMET--TAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTIL  116 (581)
Q Consensus        44 ~~~~~l~~yl~~~~-----~~s~--~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~  116 (581)
                      +....+...+++..     ..+.  .+.+++.++..++..++.++.|+++|+ +|||++++++.+++.+|.++++++.  
T Consensus        64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a~--  140 (513)
T KOG0254|consen   64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALAP--  140 (513)
T ss_pred             ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhh--
Confidence            45555555555422     1222  344899999999999999999999999 7999999999999999999999998  


Q ss_pred             ccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHH
Q 039943          117 SQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSM  196 (581)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  196 (581)
                                           +...++++|++.|+|.|+.....+.+++|..|+       +.|+...+..+...++|..
T Consensus       141 ---------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~-------~~RG~l~~~~~l~~~~Gi~  192 (513)
T KOG0254|consen  141 ---------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPA-------HIRGTLVSLYQLFITIGIL  192 (513)
T ss_pred             ---------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCCh-------hhhHHHHHHHHHHHHHHHH
Confidence                                 899999999999999999999999999999998       7799999999999999999


Q ss_pred             HHHHHHHhhhcc--ccchhhhHHHHHHHHHHHHHHHhcC--CcccccCCCCChhhhHHHHHHHHHhhccccccCcccccc
Q 039943          197 VAVTCIVYIQDN--LGWKVGFGVPAVISLLSALSFFLAS--PFYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEM  272 (581)
Q Consensus       197 ~~p~~~~~i~~~--~g~~~~f~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (581)
                      ++..+ ++..++  ++||..+.+..+..++..+.+++.+  |++..++.+.   .+..+.+.......    +.+.+.+.
T Consensus       193 ~~~~~-~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~---~~a~~~l~~l~g~~----~~~~~~~~  264 (513)
T KOG0254|consen  193 LGYCI-NYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRL---EEAKRSLKRLRGLS----PEDVEVEL  264 (513)
T ss_pred             HHHHH-hhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCCh---HHHHHHHHHHhCCC----CcchHHHH
Confidence            99644 444443  4899888887776665555533322  2221111111   11111111111100    00000000


Q ss_pred             ccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHHHhhcC-CChh
Q 039943          273 YHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFP  351 (581)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  351 (581)
                      .+             .. .+........+.        ...|..+..  ....|+.+..+.+..++......... ....
T Consensus       265 ~~-------------~~-~~~~~~~~~~~~--------~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~  320 (513)
T KOG0254|consen  265 EL-------------LK-IKLLVEAEVAEG--------KASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTT  320 (513)
T ss_pred             HH-------------HH-HHHHHhhhcccc--------cccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHH
Confidence            00             00 000000000000        001111111  11233344333333333332221111 1111


Q ss_pred             heecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 039943          352 VLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITET  431 (581)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  431 (581)
                      ..+.......   . .......+.++....++        ...+.||.|||       ..+..|...+.+++++.+....
T Consensus       321 if~~~g~~~~---~-~~~~~~~~~v~~~~t~~--------~~~lvd~~gRr-------~lll~s~~~m~~~~~~~~~~~~  381 (513)
T KOG0254|consen  321 IFKSAGLKSD---T-FLASIILGVVNFLGTLV--------ATYLVDRFGRR-------KLLLFGAAGMSICLVILAVVGV  381 (513)
T ss_pred             HHHhcCCCCc---h-HHHHHHHHHHHHHHHHH--------HHHHHHHhccH-------HHHHHhHHHHHHHHHHHHHHHH
Confidence            1111111100   0 01111111222222222        23477787777       4788888888888887776543


Q ss_pred             HHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039943          432 VRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMN  511 (581)
Q Consensus       432 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~  511 (581)
                      ...+....         .....++.+...+++.........|..+.+..|.+|.+.|+.+.++...++++.+.+.....+
T Consensus       382 ~~~~~~~~---------~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~  452 (513)
T KOG0254|consen  382 FALYYPNS---------SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFP  452 (513)
T ss_pred             HhccCCCc---------ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            21110000         112344444555556666667777888889999999999999999999999999998877666


Q ss_pred             hhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHH-HHhhhhccccccccchhhhhhhc
Q 039943          512 AVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFI-YFLACCKAYGPCREEASEALDEK  574 (581)
Q Consensus       512 ~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  574 (581)
                      .+....+                ....|..+++++.+... +++++.+|+|+++.||.+...++
T Consensus       453 ~~~~~~~----------------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~  500 (513)
T KOG0254|consen  453 FITEALG----------------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE  500 (513)
T ss_pred             HHHHhcc----------------ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence            5553210                13457777777777777 88999999999999998776544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.88  E-value=9.8e-20  Score=192.19  Aligned_cols=174  Identities=19%  Similarity=0.253  Sum_probs=145.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH
Q 039943           23 GGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCIT  102 (581)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (581)
                      +.+|.++...+...+..+......+.+| ++.+++|++..+.+++.+++.++..++.++.|+++|| +|||+++..+.++
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~   82 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIA-DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSI   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHH
Confidence            3456666666666666666554555554 4557899999999999999999999999999999999 7999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhH
Q 039943          103 YLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS  182 (581)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (581)
                      ..++.+.+.+++                       +.+.+++.|++.|++.+...+....+..|.+++       +++++
T Consensus        83 ~~~~~~~~~~~~-----------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~  132 (394)
T PRK11652         83 FILGTLVALFAH-----------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG-------TQLRH  132 (394)
T ss_pred             HHHHHHHHHHHc-----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH-------HHHHH
Confidence            999988888776                       678899999999999988888888888898877       56888


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHH
Q 039943          183 YFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALS  228 (581)
Q Consensus       183 ~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~  228 (581)
                      ..++...+..++..++|.+++++.+..||++.|++.++..++..+.
T Consensus       133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  178 (394)
T PRK11652        133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS  178 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence            9999889999999999999999998889999999877665544433

>PRK11043 putative transporter; Provisional

Probab=99.88  E-value=6.4e-20  Score=194.11  Aligned_cols=162  Identities=15%  Similarity=0.158  Sum_probs=136.8

Q ss_pred             HHHHHhhhhhHHHHH--hhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhh
Q 039943           38 ERMASMGLMPNMILY--LCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTI  115 (581)
Q Consensus        38 ~~~~~~~~~~~l~~y--l~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~  115 (581)
                      ....++....++|.+  +++++|.+.++.+++.+++.++..++.++.|+++|| +|||+++..+.++..++.+++.+++ 
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~-   92 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWVE-   92 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHhc-
Confidence            334444444444433  678999999999999999999999999999999999 7999999999999998888888877 


Q ss_pred             cccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHH
Q 039943          116 LSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASS  195 (581)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  195 (581)
                                            +++.+++.|++.|++.+...+...+++.|.+|+       +++.+.++......++|.
T Consensus        93 ----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  143 (401)
T PRK11043         93 ----------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPA-------QKANRVFATIMPLVALSP  143 (401)
T ss_pred             ----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHH
Confidence                                  778889999999999888888888999999987       568888888888888999


Q ss_pred             HHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 039943          196 MVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       196 ~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      .++|.+++++.+..||++.|++.++..++..+..+
T Consensus       144 ~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  178 (401)
T PRK11043        144 ALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL  178 (401)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988776665554433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.88  E-value=1.5e-19  Score=190.16  Aligned_cols=364  Identities=11%  Similarity=-0.022  Sum_probs=224.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH-HHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCIT-YLLGV  107 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~-~~~~~  107 (581)
                      +.+.+..++...++....+++|.|++ ++|+|.++.+++.+++.+...+++++.|.++|| +||++.....+.+ ..+..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHH
Confidence            33444555555555556788888885 789999999999999999999999999999999 6985433222111 11111


Q ss_pred             -HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHH
Q 039943          108 -VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSW  186 (581)
Q Consensus       108 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (581)
                       .++..++                       +++.+++.|++++.+.+...|...++..+.  .       ++|++.++.
T Consensus        85 ~~~~~~~~-----------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~-------~~~~~~~g~  132 (382)
T TIGR00902        85 AAFSAGAH-----------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW--Q-------KQFGLDYGK  132 (382)
T ss_pred             HHHHHhhh-----------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--H-------HHcCCCccH
Confidence             2222344                       688899999999999988889888886553  2       458888999


Q ss_pred             HHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhccccccC
Q 039943          187 YYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSS  266 (581)
Q Consensus       187 ~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (581)
                      .....++|.+++|++++++.+.+||+..|++.+...++.++. ....++.   +++++..+                 + 
T Consensus       133 ~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~-----------------~-  190 (382)
T TIGR00902       133 VRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIG-FLIKPTI---PPKDAIPE-----------------D-  190 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHcCCCC---CCCccccc-----------------c-
Confidence            999999999999999999999999999988765543322222 2222111   11100000                 0 


Q ss_pred             ccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhH-hHHHhhHHHHHhh
Q 039943          267 QTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVI-PLWSTGIMIAVTI  345 (581)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  345 (581)
                       +                .                          ...+.  .....+.++..... ..++........+
T Consensus       191 -~----------------~--------------------------~~~~~--~~~~l~~~~~~~~l~~~~l~~~~~~~~~  225 (382)
T TIGR00902       191 -E----------------S--------------------------QGDSA--FIALLKNPMNLRFLAAVCLIQGAHAAYY  225 (382)
T ss_pred             -c----------------c--------------------------ccchh--HHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence             0                0                          00000  00000111111111 1111122221211


Q ss_pred             cCCChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHH
Q 039943          346 SQSSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAA  425 (581)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~  425 (581)
                      ...+.++.. .      +    .+....+....+..+ ...+    ...+.+|+.+|   .+.++.+.++.+..++....
T Consensus       226 ~~~~~~l~~-~------g----~s~~~~g~l~~~~~~-~~i~----~~~~~~~l~~r---~g~~~~l~~~~~~~~~~~~~  286 (382)
T TIGR00902       226 GFSAIYWQA-A------G----ISASATGLLWGIGVL-AEII----IFAFSNKLFQN---CSARDLLLISAIACVGRWAI  286 (382)
T ss_pred             HHHHHHHHH-C------C----CCHhHHHHHHHHHHH-HHHH----HHHHhHHHHhh---CCHHHHHHHHHHHHHHHHHH
Confidence            112222211 1      1    222222222222111 1111    22234444444   56667888888888888776


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHH-HHHHHHHH
Q 039943          426 WAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHG-LGMSVASL  504 (581)
Q Consensus       426 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~ig~~  504 (581)
                      ....+                      +.+.++...++.++..+...+....++.+. |++.+++++++++ ....+|.+
T Consensus       287 ~~~~~----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~  343 (382)
T TIGR00902       287 IGAIE----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIA  343 (382)
T ss_pred             HHhHh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHH
Confidence            65532                      456666678999999999999999999888 9999999999986 56779999


Q ss_pred             HHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHH
Q 039943          505 VASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIY  552 (581)
Q Consensus       505 i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~  552 (581)
                      +++.+.|.+.|..+                 ...|+..+++.+++.++
T Consensus       344 ~g~~~~G~l~~~~g-----------------~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       344 IFTAFAGFIYPTLG-----------------AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHhcc-----------------HHHHHHHHHHHHHHHHH
Confidence            99999999987431                 24577778777766544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.88  E-value=2.2e-20  Score=198.95  Aligned_cols=394  Identities=9%  Similarity=0.032  Sum_probs=221.5

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      +..+...+..++..++++...++++.|+++++|++..+.+++.+++.++..+++++.|+++|| +|||++++++..+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence            455666667777778777889999999999999999999999999999999999999999999 7999999887666555


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +..........+..               ........+.+.+..|.+.....+....+    .++..     ++++..++
T Consensus        89 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~~g~~~g  144 (420)
T PRK09528         89 LFGPFFIYVFAPLL---------------QYNILLGAIVGGIYLGFGFLAGAGAIEAY----IERVS-----RRSGFEYG  144 (420)
T ss_pred             HHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhhhhccchhhhhhH----HHHHH-----hhccccch
Confidence            43322111100000               00011112233333443333333333333    22111     34667778


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhcccccc
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLS  265 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (581)
                      ..+...++|..++|.+++++.+ .+|++.|++.++..++.++..+...++.++++ +.+              ++.  .+
T Consensus       145 ~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~--~~  206 (420)
T PRK09528        145 RARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTA-KVA--------------NAL--GA  206 (420)
T ss_pred             hhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchh-hhc--------------cch--hc
Confidence            8888889999999999999876 58999998887766655544433322211100 000              000  00


Q ss_pred             CccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHHHhh
Q 039943          266 SQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTI  345 (581)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (581)
                        +        +      +..  ...+.....                          ..+.+.............+..+
T Consensus       207 --~--------~------~~~--~~~~~~~~l--------------------------~~~~~~~l~l~~~~~~~~~~~~  242 (420)
T PRK09528        207 --N--------A------SAV--SLKDALALL--------------------------KLPKFWFLVLYVIGVACFYDVF  242 (420)
T ss_pred             --c--------c------ccc--cHHHHHHHc--------------------------cCCCeEeehHHHHHHHHHHHHH
Confidence              0        0      000  000000000                          0011111111111111111111


Q ss_pred             cC-CChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHH
Q 039943          346 SQ-SSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMA  424 (581)
Q Consensus       346 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~  424 (581)
                      .+ .+.++.+.. .+..      .+....+.+..+..+.. .+...+..++.||+++|       +.+.++.++.++++.
T Consensus       243 ~~~~~~~~~~~~-~~~~------~~~~~~g~~~~~~~~~~-~~~~~~~g~l~dr~g~~-------~~~~~~~~l~~~~~~  307 (420)
T PRK09528        243 DQQFPNFFASFF-ATPE------QGTRVFGYLNSFQVFLE-ALIMFFAPFIINRIGAK-------NALLLAGTIMAVRII  307 (420)
T ss_pred             HHHHHHHHHHHH-hccC------cchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcc-------hhhHHHHHHHHHHHH
Confidence            11 222221111 0111      11111222222111111 11222344577776666       356666666666655


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHH-HHHHHHHHH
Q 039943          425 AWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASAL-HGLGMSVAS  503 (581)
Q Consensus       425 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig~  503 (581)
                      ......                      +.+++....++.+++.....+....++.+..|++.+++..+. +++...+|.
T Consensus       308 l~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~  365 (420)
T PRK09528        308 GSGFAT----------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGA  365 (420)
T ss_pred             HHHhcc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHH
Confidence            554421                      344555566777777777777777888888999999988765 677788999


Q ss_pred             HHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 039943          504 LVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKA  559 (581)
Q Consensus       504 ~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~  559 (581)
                      ++++.+.+.+.|..      +          ++..|.+.+++.++..++.++..++
T Consensus       366 ~ig~~~~G~l~~~~------G----------~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        366 VFLSTLAGNLYDSI------G----------FQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHHHHhh------C----------chHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999988743      2          4678888888887777666655443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.87  E-value=7.9e-21  Score=198.23  Aligned_cols=154  Identities=16%  Similarity=0.175  Sum_probs=135.6

Q ss_pred             hHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccc
Q 039943           47 PNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQ  126 (581)
Q Consensus        47 ~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (581)
                      ....+++.+++|++..+.+++.+++.++..++.++.|+++|| +|||+++..+.++..++.+++.++.            
T Consensus        15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~------------   81 (379)
T TIGR00881        15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFST------------   81 (379)
T ss_pred             hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHhh------------
Confidence            334457888999999999999999999999999999999999 6999999999999999999998887            


Q ss_pred             cccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHH-HHHHhh
Q 039943          127 LRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAV-TCIVYI  205 (581)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p-~~~~~i  205 (581)
                                 +.+.+++.|++.|++.+...+...+++.|.+|+       ++|++..++.+.+.++|..++| ++++.+
T Consensus        82 -----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  143 (379)
T TIGR00881        82 -----------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSR-------SERGTWVSFWNCSHNVGGGLLPPLVLFGI  143 (379)
T ss_pred             -----------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCH-------hhheeeEeehhccchhHHHHHHHHHHHHH
Confidence                       788899999999999999999999999999998       6699999999999999999999 567777


Q ss_pred             hccccchhhhHHHHHHHHHHHHHHHh
Q 039943          206 QDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       206 ~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      .+..+|++.|++.+++.++..+...+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (379)
T TIGR00881       144 AELYSWHWVFIVPGIIAIIVSLICFL  169 (379)
T ss_pred             HhcCCchhHHHHHHHHHHHHHHHHhe
Confidence            77789999998887766555444433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.87  E-value=3.2e-20  Score=194.99  Aligned_cols=395  Identities=11%  Similarity=0.077  Sum_probs=236.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHH
Q 039943           65 TNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYS  144 (581)
Q Consensus        65 ~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (581)
                      +.+++++.+++++|.+++|+++|| +|||+.++++.++..++.+++.++...                    .+..+++.
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~--------------------~~~e~li~  121 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSA--------------------PSFEMLIL  121 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHh--------------------hhHHHHHH
Confidence            566899999999999999999999 699999999999999988888887632                    27899999


Q ss_pred             HHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHH--hhhccccchhhhHHHHHHH
Q 039943          145 ALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIV--YIQDNLGWKVGFGVPAVIS  222 (581)
Q Consensus       145 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~--~i~~~~g~~~~f~~~~~~~  222 (581)
                      +|++.|+..|......+.++.|..|+       +.||..-.+...+..+|..++.+++.  .+.....|.+.+.+..+..
T Consensus       122 GR~i~Gl~~gl~~~~~pmyl~E~sP~-------~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~  194 (485)
T KOG0569|consen  122 GRLIVGLACGLSTGLVPMYLTEISPK-------NLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA  194 (485)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhhcChh-------hhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999       77999999999999999999976653  2334456999988888877


Q ss_pred             HHHHHHHHhcC--Cccccc-CCCCChhhhHHHHHHHHHhhccccccCccccccccCCCCCccccCCcchhhhhhhhhccC
Q 039943          223 LLSALSFFLAS--PFYVQS-KANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKH  299 (581)
Q Consensus       223 ~i~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (581)
                      ++.++.+.+.+  |++.-. +.+.++.++..+..       +-+.+  +++..             ++.....+.....+
T Consensus       195 ~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y-------~G~~~--~~~~~-------------e~~~~e~~~~~~~~  252 (485)
T KOG0569|consen  195 LLQLALLPFLPESPKYLLIKKGDEEEARKALKFY-------RGKED--VEAEI-------------EEMLREIEEEELEK  252 (485)
T ss_pred             HHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHH-------hCCCc--chhHH-------------HHHHHHHHHhcccc
Confidence            76665554433  333222 22222222211111       00000  00000             00000000000000


Q ss_pred             CCCCCCCCCCCCCCCCccchhhHHHHHh-HHhhHhHHHhhHHHHHhhc-CCChhheecccCCCCCCCCcccCcccccchh
Q 039943          300 PGQDSTPDRRASNPWSLCTVDQVEELKA-LIKVIPLWSTGIMIAVTIS-QSSFPVLQASTMDRHITPNFEIPSGSFGIFT  377 (581)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (581)
                       .        ...++......  +..|+ +...+.+...+..-..... +.+.......+....   .....+...+.++
T Consensus       253 -~--------~~~sl~~~~~~--~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~---~a~~an~~~g~v~  318 (485)
T KOG0569|consen  253 -K--------KQISLRQLLKN--PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPE---EAQYANLGIGIVN  318 (485)
T ss_pred             -c--------cCCcHHHHhcC--cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHH---HHHHHHHHHHHHH
Confidence             0        01111100000  01122 1222212111111111000 011111111111100   0001111222222


Q ss_pred             hHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHH-
Q 039943          378 IITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMW-  456 (581)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-  456 (581)
                      ....+        +...+.+|.|||+       .+..+..++.+..+++..........              . ++.. 
T Consensus       319 ~~~t~--------~~~~lid~~gRRp-------Lll~~~~~~~~~~~~~~~~~~l~~~~--------------~-~~~~y  368 (485)
T KOG0569|consen  319 LLSTL--------VSPFLIDRLGRRP-------LLLISLSLMAVALLLMSIALFLSNSF--------------G-SWLSY  368 (485)
T ss_pred             HHHHH--------HHHHHHHhcCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHh--------------h-hHHHH
Confidence            22222        2334778888884       67777776666665555443211100              0 1211 


Q ss_pred             -HHHHHH-HHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCch
Q 039943          457 -VLPYHV-LSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGR  534 (581)
Q Consensus       457 -~~~~~~-~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~  534 (581)
                       .+...+ +.........|..+-+..|.+|++.|+.++++...++++.+++.....+.+.+..+                
T Consensus       369 ~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g----------------  432 (485)
T KOG0569|consen  369 LCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG----------------  432 (485)
T ss_pred             HHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------
Confidence             122222 23333455578889999999999999999999999999999999999998887543                


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhccccccccchhhh
Q 039943          535 YDYYYWLLAGLNMASFIYFLACCKAYGPCREEASEA  570 (581)
Q Consensus       535 ~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (581)
                       .+.|+.+++.+++..+..+...||+|+|+-.|+.+
T Consensus       433 -~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~  467 (485)
T KOG0569|consen  433 -PYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIE  467 (485)
T ss_pred             -chhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHH
Confidence             25789999999999999999999999998776433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.87  E-value=2e-19  Score=188.54  Aligned_cols=154  Identities=18%  Similarity=0.199  Sum_probs=136.7

Q ss_pred             hhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcc
Q 039943           45 LMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPAC  124 (581)
Q Consensus        45 ~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (581)
                      ..+.+|.+. +++|++..+.+++.+++.++..++.++.|+++|| +|||+++..+.++.+++..++.+++          
T Consensus        10 ~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~----------   77 (377)
T PRK11102         10 YLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALAQ----------   77 (377)
T ss_pred             HhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHHc----------
Confidence            446666655 5799999999999999999999999999999999 7999999999999999999988877          


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHh
Q 039943          125 DQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVY  204 (581)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  204 (581)
                                   +.+.+++.|++.|++.+...+...+++.|.+|+       ++|++.+++.+....+|..++|.++++
T Consensus        78 -------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~  137 (377)
T PRK11102         78 -------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPK-------EEFSRMMSFVTLVMTIAPLLAPIIGGW  137 (377)
T ss_pred             -------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         678889999999999999999999999999988       679999999999999999999999999


Q ss_pred             hhccccchhhhHHHHHHHHHHHHHHH
Q 039943          205 IQDNLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       205 i~~~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      +.+..+|++.|++.++..++..+...
T Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102        138 LLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            99989999999987776665544433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.87  E-value=1.3e-20  Score=200.06  Aligned_cols=379  Identities=14%  Similarity=0.128  Sum_probs=236.2

Q ss_pred             hhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccc
Q 039943           55 GEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESA  134 (581)
Q Consensus        55 ~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (581)
                      ++++++.+|.+++.+.+..++.++++++|+++|| +|-|+++..+.++.++++++.+++..                   
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~-------------------  125 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAAS-------------------  125 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            3688999999999999999999999999999999 69999999999999999999999882                   


Q ss_pred             cchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhcc-ccchh
Q 039943          135 TWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDN-LGWKV  213 (581)
Q Consensus       135 ~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~-~g~~~  213 (581)
                        .+.+.+++.|+++|++.|...|+...+.+.+.|+       .+|++..++.+.+..+|.+++.+++|++.+. +||++
T Consensus       126 --~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~-------~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~s  196 (466)
T KOG2532|consen  126 --IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPP-------NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPS  196 (466)
T ss_pred             --hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCch
Confidence              2445789999999999999999999999999999       6799999999999999999999999999998 99999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhccccccCccccccccCCCCCccccCCcchhhhhh
Q 039943          214 GFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNK  293 (581)
Q Consensus       214 ~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (581)
                      +||+.+++.++..+++++.....+.++|.-+..+                                        +.+++.
T Consensus       197 ifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~E----------------------------------------l~~I~~  236 (466)
T KOG2532|consen  197 IFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKE----------------------------------------LKYIEK  236 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHH----------------------------------------HHHHHh
Confidence            9999999988887777665443333222211100                                        000100


Q ss_pred             hhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHHHhhcC-CChhheecccCCCCCCCCcccCccc
Q 039943          294 ACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFPVLQASTMDRHITPNFEIPSGS  372 (581)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  372 (581)
                      .+...+.     + .....||+....     ...+...+..............+ .+.|+.+...++..-       .+.
T Consensus       237 ~k~~~~~-----~-~~~~vP~~~i~t-----s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~-------~G~  298 (466)
T KOG2532|consen  237 GKSEAHV-----K-KKPPVPYKAILT-----SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRE-------TGF  298 (466)
T ss_pred             ccccccc-----C-CCCCCCHHHHHc-----CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhh-------hhH
Confidence            0000000     0 001445542111     11111111111111111112222 455544433332221       233


Q ss_pred             ccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcc
Q 039943          373 FGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRM--GIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVV  450 (581)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  450 (581)
                      +..+..+...+...+.+.    +.||+..|....+..+++  .++....++.++..++...                   
T Consensus       299 ~salP~l~~~~~k~~~g~----lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~-------------------  355 (466)
T KOG2532|consen  299 LSALPFLAMAIVKFVAGQ----LSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD-------------------  355 (466)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC-------------------
Confidence            334444444444444344    444443331112233333  5555666666655554321                   


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCC
Q 039943          451 KMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNI  530 (581)
Q Consensus       451 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~  530 (581)
                      ... +..++.+.+.-...++..+..+.-..+.+ +++.+..+|+.+.+..+..+++|.+.+.+...   ++.++|     
T Consensus       356 ~~~-~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~---~t~~eW-----  425 (466)
T KOG2532|consen  356 EHR-LLAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVTD---NTREEW-----  425 (466)
T ss_pred             Ccc-hHHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeCC---CCHHHH-----
Confidence            111 11111111111111222222222112223 56689999999999999999999999888631   133466     


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhhhhc
Q 039943          531 NKGRYDYYYWLLAGLNMASFIYFLACCK  558 (581)
Q Consensus       531 ~~~~~~~~f~~~a~~~~~~~~~~~~~~~  558 (581)
                           +.+|.+.+++.+++.+++.++..
T Consensus       426 -----~~VF~i~a~i~~~~~i~f~~f~s  448 (466)
T KOG2532|consen  426 -----RIVFLIAAGILIVGNIIFLFFGS  448 (466)
T ss_pred             -----HHHHHHHHHHHHHhchheeEeec
Confidence                 88999999999999988877753

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.87  E-value=7.9e-19  Score=185.16  Aligned_cols=171  Identities=15%  Similarity=0.112  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVV  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  108 (581)
                      .......+....+.......+| .+.+++|.+..+.+++.+++.++..++.++.|+++|| +|||+++..+.++..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~   83 (392)
T PRK10473          6 LCSFALVLLYPAGIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASL   83 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHH
Confidence            3334444555555555555555 4557899999999999999999999999999999999 7999999999999999988


Q ss_pred             HHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHH
Q 039943          109 LLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYY  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (581)
                      ++..++                       +.+.+++.|+++|++.+...+...+++.|.+|+       ++|++..++.+
T Consensus        84 ~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~  133 (392)
T PRK10473         84 LCSLAE-----------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD-------RRRAKVLSLLN  133 (392)
T ss_pred             HHHHhC-----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH-------HHHHHHHHHHH
Confidence            888776                       677888999999999999999999999999988       67999999999


Q ss_pred             HHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh
Q 039943          189 VSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       189 ~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      ...++|..++|.+++++.+..+|++.|++.+++.++..+....
T Consensus       134 ~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  176 (392)
T PRK10473        134 GITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF  176 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888889999999987766655544333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.86  E-value=3.7e-19  Score=190.38  Aligned_cols=172  Identities=15%  Similarity=0.177  Sum_probs=129.5

Q ss_pred             HHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc---cCch-hhHHHHHHHHHHHHHHHHH
Q 039943           37 FERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSC---VGRY-PMIGFGCITYLLGVVLLWL  112 (581)
Q Consensus        37 ~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~---~Grr-~~~~~~~~~~~~~~~~~~~  112 (581)
                      ..++....+..+++.|+++++|+++.++|++.++..+..++..|+.|+++||.   +||| +.++.+.++.+++.+++..
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~   89 (437)
T TIGR00792        10 GNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFT   89 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHh
Confidence            34455555668899999999999999999999999999999999999999972   4774 4677787888888777766


Q ss_pred             hhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHh
Q 039943          113 TTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVL  192 (581)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  192 (581)
                      .++...                 ......+++.+++.+++.+.......++.+|..+++      ++|++..++.....+
T Consensus        90 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~~R~~~~~~~~~~~~  146 (437)
T TIGR00792        90 TPDFSA-----------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDP------RERESLSTFRRFGAT  146 (437)
T ss_pred             CCCCCc-----------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCH------HHHHHHHHHHHHHHH
Confidence            552111                 123566777788888888888888888888887543      469999988888888


Q ss_pred             hHHHHHHHHHHhhh-------ccccchhhhHHHHHHHHHHHHHHHh
Q 039943          193 ASSMVAVTCIVYIQ-------DNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       193 ~g~~~~p~~~~~i~-------~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      +|..+++.+.+.+.       +..+|++.+.+.+++.++..+....
T Consensus       147 ~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~  192 (437)
T TIGR00792       147 LGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFF  192 (437)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHc
Confidence            88877766655443       2458999988877766655544433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.86  E-value=5.5e-19  Score=187.85  Aligned_cols=396  Identities=12%  Similarity=0.032  Sum_probs=225.8

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCc-hhhHHHHHHHHHHHHH
Q 039943           30 FIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGR-YPMIGFGCITYLLGVV  108 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Gr-r~~~~~~~~~~~~~~~  108 (581)
                      .+.+..++...++-...+++++|+++++|++..|.|++.+++.++..+++++.|+++|| +|| |+++.++.++..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~   84 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLF   84 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHH
Confidence            34455556666666677999999999999999999999999999999999999999999 665 7788888887777777


Q ss_pred             HHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCC--CCcccchhhhHHHHH
Q 039943          109 LLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKG--DENKSKGALQSYFSW  186 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~r~~~~~~  186 (581)
                      +..+.+                       +++.++..|++.|++.+...+...++..+...+.  |..+. ..|.+.++ 
T Consensus        85 ~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~-~~~~r~~G-  139 (418)
T TIGR00889        85 FAAQVT-----------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTD-FPPIRVMG-  139 (418)
T ss_pred             HHHHhc-----------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhc-CCCeeeeh-
Confidence            777666                       6777888888999987777776665543222110  00000 12444443 


Q ss_pred             HHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhccccccC
Q 039943          187 YYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSS  266 (581)
Q Consensus       187 ~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (581)
                           .+|.++||.+++.+.....|. +|++.++..++..+..+ ..++.++.+ +++. .+..+       +.      
T Consensus       140 -----~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~-~~~~-~~~~~-------~~------  197 (418)
T TIGR00889       140 -----TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAK-STAK-MSIKV-------ML------  197 (418)
T ss_pred             -----hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCc-cccc-cCHHH-------Hh------
Confidence                 478899999988884433454 45555555444443322 222211100 0000 00000       00      


Q ss_pred             ccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHHHhhc
Q 039943          267 QTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTIS  346 (581)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (581)
                                          +   .+.....                         ++.+.....+..++..........
T Consensus       198 --------------------~---~~~~~~~-------------------------k~~~~~~~~~~~~~~~~~~~~~~~  229 (418)
T TIGR00889       198 --------------------G---LDAFILF-------------------------KNKRMAIFFFFSMLLGAPLQITNI  229 (418)
T ss_pred             --------------------h---hhHHHHh-------------------------cCCCeeeHHHHHHHHHhHHHHHHH
Confidence                                0   0000000                         000000000111111111111111


Q ss_pred             CCChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHH
Q 039943          347 QSSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAW  426 (581)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~  426 (581)
                      ..+.+..+. ..+.....+  ......+....+..+.. .+...+..++.||+++|       +.+..+.++.++++..+
T Consensus       230 ~~~~~~~~~-g~~~~~~~~--~~~~~~g~~~~~~~i~~-i~~~~~~g~l~dr~g~r-------~~l~~~~~~~~v~~~l~  298 (418)
T TIGR00889       230 FGNGFLHEF-GRNPEFADS--FVVKNASIWMSLSQFSE-IFFILTIPFFLKRFGIK-------KVMLLSLVAWALRFGFF  298 (418)
T ss_pred             hHHHHHHHh-cccccccch--hhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhCcH-------HHHHHHHHHHHHHHHHH
Confidence            111121110 000000000  00111122222211111 11123344567775554       57777777777766555


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHH-HHHHHHHHH
Q 039943          427 AITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHG-LGMSVASLV  505 (581)
Q Consensus       427 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~ig~~i  505 (581)
                      .....                  .....+.++...++.+++++...+....++.+.+|++.|++++|+.+ ....+|.++
T Consensus       299 ~~~~~------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i  360 (418)
T TIGR00889       299 AYGDP------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL  360 (418)
T ss_pred             HHcCc------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence            44210                  01123344556788888888888888889999999999999999997 678899999


Q ss_pred             HHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhccc
Q 039943          506 ASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAY  560 (581)
Q Consensus       506 ~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~  560 (581)
                      ++.+.+.+.+..+....          .+|+..|.+.+++.+++.+.++++.++.
T Consensus       361 Gp~l~G~l~~~~g~~~~----------~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       361 GYILSGVMVEKMFAYGT----------FDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHhccccC----------CchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999876432110          1357888888888888888888887654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.86  E-value=5e-19  Score=187.00  Aligned_cols=385  Identities=9%  Similarity=0.031  Sum_probs=226.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~  106 (581)
                      .+|......++...+...+.++++.|+++++|++..+.+++.+++.++..++.++.|+++|| +|||+.++.+.+..+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~   81 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVL   81 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence            45666667777778878888999999999999999999999999999999999999999999 79999999877666554


Q ss_pred             HHHHH---HhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          107 VVLLW---LTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       107 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                      .....   +.+...                  ......+++.+++.|++.+...+...++..|.-+         +++..
T Consensus        82 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---------~~~~~  134 (396)
T TIGR00882        82 FAPFFIYVFGPLLQ------------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR---------NSNFE  134 (396)
T ss_pred             HHHHHHHHhhhHHH------------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh---------hcccc
Confidence            33221   111000                  0023445667888898888888888777666422         23456


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhcccc
Q 039943          184 FSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIK  263 (581)
Q Consensus       184 ~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (581)
                      ++..+...++|..++|.+++.+.+ .+|+.+|++.+++.++..+..+...++.    ++++...            +..+
T Consensus       135 ~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~~------------~~~~  197 (396)
T TIGR00882       135 YGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA----PSSATVA------------NALG  197 (396)
T ss_pred             cchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC----chhhhhh------------cccc
Confidence            677777889999999999998865 5999999988777666554443322211    1100000            0000


Q ss_pred             ccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHHH
Q 039943          264 LSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAV  343 (581)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (581)
                      .+           +      ..++.+  +..                          .....|.....+.........+.
T Consensus       198 ~~-----------~------~~~~~~--~~~--------------------------~~l~~~~~~~~~l~~~~~~~~~~  232 (396)
T TIGR00882       198 AN-----------A------SAFSLK--LAL--------------------------ELFRQRKFWMFVLYVVGVACVYD  232 (396)
T ss_pred             cc-----------c------CCCCHH--HHH--------------------------HHHcCCcHHHHHHHHHHHHHHHH
Confidence            00           0      000000  000                          00001111111111111111111


Q ss_pred             hhcC-CChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHH
Q 039943          344 TISQ-SSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTAS  422 (581)
Q Consensus       344 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~  422 (581)
                      ...+ .+.++..... +..      ......+....+..+...+ ......++.||+++|       +.+.++.++.++.
T Consensus       233 ~~~~~~~~y~~~~~~-~~~------~~~~~~g~~~~~~~i~~~~-~~~~~g~l~~r~g~~-------~~l~~~~~l~~l~  297 (396)
T TIGR00882       233 VFDQQFANFFTSFFA-TPQ------QGTRVFGYVTTMGELLNAL-IMFCAPLIINRIGAK-------NALLIAGTIMSVR  297 (396)
T ss_pred             HHHHHHHHHHHHhcc-ccc------cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccc-------hhHHHHHHHHHHH
Confidence            1111 1222111110 001      1111122222221111111 122334567776655       4566777666666


Q ss_pred             HHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHH-HHHHHHH
Q 039943          423 MAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASAL-HGLGMSV  501 (581)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~i  501 (581)
                      +......                      .+.+++.+..++.+++..........+..+..|++.+++..+. .+....+
T Consensus       298 ~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~l  355 (396)
T TIGR00882       298 IIGSSFA----------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQL  355 (396)
T ss_pred             HHHHHhc----------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHH
Confidence            5543331                      2444555666777777666666666677777888888887776 5788999


Q ss_pred             HHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 039943          502 ASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFL  554 (581)
Q Consensus       502 g~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~  554 (581)
                      |+++++.+.+.+.|..                ++...|.+.+++.++..+...
T Consensus       356 g~~~~~~l~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       356 AMIFLSTLAGNMYDSI----------------GFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHhHHHHHHhc----------------ccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998743                257788888888777665543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.85  E-value=1e-18  Score=184.47  Aligned_cols=179  Identities=11%  Similarity=0.000  Sum_probs=131.8

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhh-hcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCG-EYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      |.++...+ .+.-.+..+.+.+.+...+.+ ++|+|.+|.+++.+++.+++.++.++.|++.|| +|.|+++.++.++..
T Consensus        34 r~l~~s~~-~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWISVS-CLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHH
Confidence            44443333 344444444455555556544 899999999999999999999999999999999 699999999999999


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      +...+++++.+.                  ...++..+++.|++.|++ +...+.....++++||+       ++|+++.
T Consensus       112 i~~~~~~~a~~~------------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~-------~~rG~A~  165 (462)
T PRK15034        112 IPCVWLGIAVQN------------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPK-------AKQGSAL  165 (462)
T ss_pred             HHHHHHHHHHcc------------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH-------hHhHHHH
Confidence            999888876200                  011788999999999998 66888899999999998       6799999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhh-----c-------------cccchhhhHHHHHHHHHHHHHHHhc
Q 039943          185 SWYYVSVLASSMVAVTCIVYIQ-----D-------------NLGWKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       185 ~~~~~~~~~g~~~~p~~~~~i~-----~-------------~~g~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                      ++.....++|..+++.+...+.     .             ..+|+.++++..+..++..+..++.
T Consensus       166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9997666777766555544322     2             2346666666666655555444443

>PRK10133 L-fucose transporter; Provisional

Probab=99.85  E-value=1.2e-18  Score=186.22  Aligned_cols=148  Identities=12%  Similarity=0.071  Sum_probs=119.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~  106 (581)
                      .++.+.+..+...+........+ +.+++++|+++.+.+++.+.+.+++.+++++.|+++|| +|||+++..+.++++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~-p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~~~~~~  104 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALG  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence            33444444445555544444444 45689999999999999999999999999999999999 79999999999999999


Q ss_pred             HHHHH---HhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          107 VVLLW---LTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       107 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                      .+++.   +++                       ++..++++|+++|+|.|...+...+++.|..|+       ++|...
T Consensus       105 ~~l~~~~~~a~-----------------------~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~-------~~~~~~  154 (438)
T PRK10133        105 AALFWPAAEIM-----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------SSGHFR  154 (438)
T ss_pred             HHHHHHHHhcC-----------------------CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh-------hhHHHH
Confidence            98763   344                       788899999999999999999999999987554       446666


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhh
Q 039943          184 FSWYYVSVLASSMVAVTCIVYIQ  206 (581)
Q Consensus       184 ~~~~~~~~~~g~~~~p~~~~~i~  206 (581)
                      .++......+|..+||.+++.+.
T Consensus       155 ~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        155 LNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888899999998876543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.85  E-value=3.7e-18  Score=185.09  Aligned_cols=175  Identities=10%  Similarity=0.041  Sum_probs=138.4

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc-----Cchhh-HHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCV-----GRYPM-IGF   98 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~-----Grr~~-~~~   98 (581)
                      +|..+.+++..+......+.....+|.|++ +.|.+.++.+.. +...... ++.++.|.++|| +     ||||. ++.
T Consensus        11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr-~~~~~~Grrr~~ll~   86 (491)
T PRK11010         11 QPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDR-YTPPFLGRRRGWLLA   86 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHc-ccccCCCCchHHHHH
Confidence            445666666777777777777777888876 569999999886 3333332 688999999999 8     99986 667


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccch
Q 039943           99 GCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKG  178 (581)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~  178 (581)
                      +.+..+++...+++..+                    ..+++.+.+.+++.+++.+...+...++..|++|+       +
T Consensus        87 ~~i~~~~~~~~~a~~~~--------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~-------~  139 (491)
T PRK11010         87 TQLLLLVAIAAMGFLEP--------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPA-------E  139 (491)
T ss_pred             HHHHHHHHHHHHHHcCC--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-------h
Confidence            77777777777777541                    22677888899999999999999999999999997       6


Q ss_pred             hhhHHHHHHHHHHhhHHHHHHHHHHhhhc-cccchhhhHHHHHHHHHHHHHHH
Q 039943          179 ALQSYFSWYYVSVLASSMVAVTCIVYIQD-NLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       179 ~r~~~~~~~~~~~~~g~~~~p~~~~~i~~-~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      +|+++.++...+..+|..+++.+.+++.+ ..|||..|++.++..++..+..+
T Consensus       140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~  192 (491)
T PRK11010        140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL  192 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999988 47999999998877665544433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.85  E-value=1.4e-18  Score=208.12  Aligned_cols=155  Identities=11%  Similarity=0.068  Sum_probs=124.9

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcc--hhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMET--TAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITY  103 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~--~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (581)
                      +.....++..++.++...+....+..++...++.+.  ...+++.+++.++..++.+++|+++|| +|||++++++.++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~   87 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFE   87 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHH
Confidence            445555566666666665555666666666666654  346888999999999999999999999 69999999998776


Q ss_pred             HHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          104 LLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                      +++.++..++..                    ..+++.+++.|+++|++.+...+...++++|++|+       ++|+++
T Consensus        88 ~~~~~~~~~~~~--------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~  140 (1146)
T PRK08633         88 VGLTLLIVLAYY--------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK-------ENLSRA  140 (1146)
T ss_pred             HHHHHHHHHHHH--------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc-------ccchhh
Confidence            666655544321                    11578899999999999999999999999999998       669999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhhcc
Q 039943          184 FSWYYVSVLASSMVAVTCIVYIQDN  208 (581)
Q Consensus       184 ~~~~~~~~~~g~~~~p~~~~~i~~~  208 (581)
                      +++...+.++|.++||.+++++.+.
T Consensus       141 ~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        141 NGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998765

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.84  E-value=6.3e-18  Score=182.58  Aligned_cols=381  Identities=12%  Similarity=0.036  Sum_probs=242.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~  106 (581)
                      .+..+.+..++.+++......-++-++. ++.-|+...+++..+..+-..+..+++|.++|| +.|||+++.+-++..+.
T Consensus        11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~~   88 (524)
T PF05977_consen   11 NFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRALV   88 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHH
Confidence            4445556666777776554444554444 556688999999999999999999999999999 69999999998887776


Q ss_pred             HHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHH
Q 039943          107 VVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSW  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (581)
                      ...+++....                  +..+.+.+++.-++.|++.+...|+..+++.|+.|+       ++..++.++
T Consensus        89 ~~~L~~l~~~------------------~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~-------~~L~~A~al  143 (524)
T PF05977_consen   89 ALLLAVLAFF------------------GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK-------EDLPAANAL  143 (524)
T ss_pred             HHHHHHHHHh------------------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-------hhHHHHHHH
Confidence            5555544311                  123678889999999999999999999999999998       568999999


Q ss_pred             HHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhccccccC
Q 039943          187 YYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSS  266 (581)
Q Consensus       187 ~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (581)
                      .....|+...+||.++|.+....|-.++|.+.++..++....+...++..++   ++.+.+...+.+...++.       
T Consensus       144 ~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~---~~~~~e~~~~~l~~G~ry-------  213 (524)
T PF05977_consen  144 NSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPP---SSLPRERFFSALREGLRY-------  213 (524)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc---cccchhhhhhhHHHHHHH-------
Confidence            9999999999999999999888898899999888766655443333222111   111111111111111110       


Q ss_pred             ccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHHHhhc
Q 039943          267 QTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTIS  346 (581)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (581)
                                              .                               ...+.+...+........+...+.
T Consensus       214 ------------------------v-------------------------------~~~~~l~~~l~~~~~~~l~~~a~~  238 (524)
T PF05977_consen  214 ------------------------V-------------------------------RSSPPLRSVLLRSFLFNLFASAVW  238 (524)
T ss_pred             ------------------------H-------------------------------hcchHHHHHHHHHHHHHHhhhHHH
Confidence                                    0                               000111111110000011111111


Q ss_pred             C-CChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHH
Q 039943          347 Q-SSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAA  425 (581)
Q Consensus       347 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~  425 (581)
                      . .+.+..+..+          ..+..++.+....  ..+.+.+.+   +..|+.+|   .+..+.+..+.++.+++++.
T Consensus       239 aLlPl~a~~~l~----------~~a~~yGll~a~~--gvGai~Gal---~~~~l~~~---~~~~~lv~~~~~~~a~~~~~  300 (524)
T PF05977_consen  239 ALLPLFARDVLG----------GGASGYGLLLAAF--GVGAILGAL---LLPRLRRR---LSSRRLVLLASLLFALALLL  300 (524)
T ss_pred             HhhhHHHHHHhC----------CcHHHHHHHHHHH--HHHHHHHHH---HHHHhhcc---cCcchhhHHHHHHHHHHHHH
Confidence            1 2222221111          1122222222111  111111111   23333334   45556677777777777766


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHH
Q 039943          426 WAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLV  505 (581)
Q Consensus       426 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i  505 (581)
                      +++.                      .+.+..++.+++.|++.....+..++.+...+|+++||+..+++.+....+..+
T Consensus       301 lal~----------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~l  358 (524)
T PF05977_consen  301 LALS----------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPL  358 (524)
T ss_pred             Hhcc----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHH
Confidence            6653                      255666777888899989988888999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 039943          506 ASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLA  555 (581)
Q Consensus       506 ~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~  555 (581)
                      |..+.|.+.+..+                ....+.+.+++.+++.++.+.
T Consensus       359 Gsll~G~la~~~g----------------~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  359 GSLLWGFLADHFG----------------VRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHHHHHHHHHhC----------------HHHHHHHHHHHHHHHHHHHHH
Confidence            9999998877542                345566555555555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.84  E-value=5.8e-21  Score=199.92  Aligned_cols=362  Identities=31%  Similarity=0.465  Sum_probs=226.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCC
Q 039943           93 YPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGD  172 (581)
Q Consensus        93 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~  172 (581)
                      .|++.++.+++.+|.+++.++...+..              ++..+...++++..+.++|.|+..|+..++++|++++++
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~--------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~   66 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSL--------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD   66 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC--------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchh--------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence            378899999999999998887632221              123356789999999999999999999999999999874


Q ss_pred             CcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCccccc-CCCCChhhh-HH
Q 039943          173 ENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQS-KANTSLLTG-LI  250 (581)
Q Consensus       173 ~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~-~~  250 (581)
                      +    ++|.+.++++|++.|+|+.+++.+.+++.++.||.+.|.++++.++++++.++...+++.+. ++.++...+ ..
T Consensus        67 ~----~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~  142 (372)
T PF00854_consen   67 D----SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIK  142 (372)
T ss_dssp             T----THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SH
T ss_pred             h----hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHH
Confidence            3    78999999999999999999999999999999999999999999999999999888877776 555655554 33


Q ss_pred             HHHHHHHhhccccccCccccccccCCCC--CccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCc-cchhhHHHHHh
Q 039943          251 QVLVASYKNRHIKLSSQTTEEMYHPRKG--SMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSL-CTVDQVEELKA  327 (581)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  327 (581)
                      .......+++....+..+ ....+....  ........  .... ......+.         ...|.. +..++.+..+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~k~  209 (372)
T PF00854_consen  143 LVLVAAFKKRKLAVPKGS-SWLDWALFQYSERSIFGII--VFIR-AAVIFFPE---------IFFWALFCQVQRVEELKA  209 (372)
T ss_dssp             HHHHHHHHHHCCCH-HHH-HHHHHHHHHHCCCCCCCCC--CHHH-HHHHHCCC---------HHHHTTTSSTTTHHHCCH
T ss_pred             HHHHHHHHHhhcccccch-HHHHHhhhhhhhhhhhhhh--hhcc-chhhhhhh---------hhhcccCCccceeeeeee
Confidence            333444444433322111 000000000  00000000  0000 00000000         000000 11234455666


Q ss_pred             HHhhHhHHHhhHHHHHhhcC-CChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCC
Q 039943          328 LIKVIPLWSTGIMIAVTISQ-SSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQL  406 (581)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~  406 (581)
                      ..+.++.+.+.+.++..+.+ ......+...+++...+.+++++..++.++.+.+++..|+.+++.+|+.+ .+++   .
T Consensus       210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~-~~~~---~  285 (372)
T PF00854_consen  210 LIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLR-RGIQ---P  285 (372)
T ss_dssp             HHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTT-T-------
T ss_pred             eeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhh-hccc---c
Confidence            66666666667777777777 66667777777777773489999999999999999999999999999888 3333   7


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCch
Q 039943          407 RLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRS  486 (581)
Q Consensus       407 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~  486 (581)
                      +...++.+|++++.+++.+....+..+.......+         ..+.+|.++.+++..++|.+..+...+..++.+|++
T Consensus       286 ~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~  356 (372)
T PF00854_consen  286 SPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSR  356 (372)
T ss_dssp             --HHHHHHH-HHHHHHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHh
Confidence            88899999999999998888776653332322222         233467779999999999999998888666666666


Q ss_pred             hhHHHHHHHHHH
Q 039943          487 MSSIASALHGLG  498 (581)
Q Consensus       487 ~rg~~~g~~~~~  498 (581)
                      ..+..+|++...
T Consensus       357 ~p~~m~~~~~~~  368 (372)
T PF00854_consen  357 APSSMMGIWFAL  368 (372)
T ss_dssp             -SSSSTHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            555555555443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.83  E-value=1.9e-18  Score=206.52  Aligned_cols=159  Identities=12%  Similarity=0.069  Sum_probs=117.2

Q ss_pred             HHHHhhhhhHHHHHhhhhcCCcc-hhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH--HHHHHHHHHH-hh
Q 039943           39 RMASMGLMPNMILYLCGEYNMET-TAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCIT--YLLGVVLLWL-TT  114 (581)
Q Consensus        39 ~~~~~~~~~~l~~yl~~~~~~s~-~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~--~~~~~~~~~~-~~  114 (581)
                      ++....+...+...+++..+.+. ...++..+++.+.+.++.+++|+++|| +|||+++......  ......+.++ ..
T Consensus        28 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~~  106 (1140)
T PRK06814         28 NFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHLN  106 (1140)
T ss_pred             HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333333333333444443333 446778889999999999999999999 6999986442222  2222222222 23


Q ss_pred             hcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhH
Q 039943          115 ILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLAS  194 (581)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  194 (581)
                                             +++.+++.|+++|++.+...|+..+++.|++|+       ++|++++++.+++.++|
T Consensus       107 -----------------------s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~-------~~~~~a~~~~~~~~~ig  156 (1140)
T PRK06814        107 -----------------------SVPLLFAALFLMGIHSALFGPIKYSILPDHLNK-------DELLGANALVEAGTFIA  156 (1140)
T ss_pred             -----------------------hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCc-------cccchhhHHHHHHHHHH
Confidence                                   788999999999999999999999999999998       66999999999999999


Q ss_pred             HHHHHHHHHhhhccccchhhhHHHHHHHHHHHHH
Q 039943          195 SMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALS  228 (581)
Q Consensus       195 ~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~  228 (581)
                      .++||+++|++.+..+|++.|.+.+++.+++++.
T Consensus       157 ~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~  190 (1140)
T PRK06814        157 ILLGTIIGGLATISGNFVILVALLMGIAVLGWLA  190 (1140)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999985444444444433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.83  E-value=9.4e-19  Score=183.54  Aligned_cols=156  Identities=17%  Similarity=0.179  Sum_probs=115.8

Q ss_pred             HHHHhhhhcC--CcchhhHHHHHHH-----HHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 039943           49 MILYLCGEYN--METTAGTNVLLIW-----TAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQP  121 (581)
Q Consensus        49 l~~yl~~~~~--~s~~~~~~i~~~~-----~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (581)
                      +..++.++..  .++++.+.+.+..     .+...++.++.|+++|| +||||++..+.++..++.+++++++++...  
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--   91 (394)
T TIGR00883        15 AAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIGLLPSYATI--   91 (394)
T ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhCCChhhh--
Confidence            4445544433  4455555544432     22334688999999999 799999999999999999999887732110  


Q ss_pred             CcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHH
Q 039943          122 PACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTC  201 (581)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~  201 (581)
                                   .......+++.|+++|++.+...+...+++.|.+|+       ++|++..+..+.+..+|..+++.+
T Consensus        92 -------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~~  151 (394)
T TIGR00883        92 -------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPP-------GKRGFYGSFQQVGAPVGLLLAALT  151 (394)
T ss_pred             -------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCc-------ccchHHHHHHHHHHHHHHHHHHHH
Confidence                         001124688899999999999999999999999988       669999999999999999999987


Q ss_pred             HHhhh--------ccccchhhhHHHHHHHHHHHH
Q 039943          202 IVYIQ--------DNLGWKVGFGVPAVISLLSAL  227 (581)
Q Consensus       202 ~~~i~--------~~~g~~~~f~~~~~~~~i~~~  227 (581)
                      ++.+.        +.++||+.|++.++..+++..
T Consensus       152 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       152 VLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY  185 (394)
T ss_pred             HHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence            76553        357899999887766554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.83  E-value=8.5e-18  Score=176.75  Aligned_cols=156  Identities=10%  Similarity=-0.043  Sum_probs=119.0

Q ss_pred             HHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCch----hhHHHHHHHHHHHHHHH
Q 039943           35 EAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRY----PMIGFGCITYLLGVVLL  110 (581)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr----~~~~~~~~~~~~~~~~~  110 (581)
                      .++..++...+.+++|.|++ ++|.|..+.|++.+++.+...++.++.|.++|| +|||    +.+.+..++.  .....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~--~~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLF--AVAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHH--HHHHH
Confidence            34444555666788889995 689999999999999999999999999999999 6984    3332222111  11122


Q ss_pred             HHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHH
Q 039943          111 WLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVS  190 (581)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  190 (581)
                      ..++                       +++.+++.|++.|++.+...|...++..+..         ++|++.++..+..
T Consensus        89 ~~~~-----------------------~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~---------~~~~~a~~~~~~~  136 (382)
T PRK11128         89 FGAH-----------------------SFWLLFVAIGLFNLFFSPLVPLTDALANTWQ---------KQIGLDYGKVRLW  136 (382)
T ss_pred             Hhcc-----------------------cHHHHHHHHHHHHHHHcccccHHHHHHHHHH---------hhccCCcchHHHH
Confidence            2223                       6788889999999999999998888877752         2377778888888


Q ss_pred             HhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHH
Q 039943          191 VLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSA  226 (581)
Q Consensus       191 ~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~  226 (581)
                      .++|.++||++++++.+++|||..|++.++..++..
T Consensus       137 ~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~  172 (382)
T PRK11128        137 GSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML  172 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence            899999999999999999999999988776544443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.83  E-value=2.2e-18  Score=174.11  Aligned_cols=182  Identities=13%  Similarity=0.073  Sum_probs=152.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHH
Q 039943           24 GLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITY  103 (581)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~  103 (581)
                      +.|.++ +....+.-.+..+.+.+.+.+++.+++|+|+.|.+++..+..+...+..++-|.+.|| ||-|++...+.++.
T Consensus        12 ~~~~L~-~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~l~   89 (417)
T COG2223          12 ARRNLW-LSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSMLLL   89 (417)
T ss_pred             hhHHHH-HHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHHHH
Confidence            344444 3344445555566677778888999999999999999999999999999999999999 79999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          104 LLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                      ++-.+..+++...                    .+.+.+++.+.+.|++.|. .+...+++++.||+       +++|.+
T Consensus        90 ~IP~~~~~~a~~~--------------------~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~-------~~qG~A  141 (417)
T COG2223          90 LIPCLGLAFAVTY--------------------PSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPK-------EKQGLA  141 (417)
T ss_pred             HHHHHHHHHHccC--------------------CchHHHHHHHHHHhcccce-ehcccccccccCCh-------hhhhHH
Confidence            9999999998732                    2457899999999998555 57788889999999       679999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhhcccc---chhhhHHHHHHHHHHHHHHHhcCCcc
Q 039943          184 FSWYYVSVLASSMVAVTCIVYIQDNLG---WKVGFGVPAVISLLSALSFFLASPFY  236 (581)
Q Consensus       184 ~~~~~~~~~~g~~~~p~~~~~i~~~~g---~~~~f~~~~~~~~i~~~~~~~~~~~~  236 (581)
                      .+++. ..|+|..+...++.++....+   |+.+..+..+.+++..+..++..+..
T Consensus       142 lGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~  196 (417)
T COG2223         142 LGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDV  196 (417)
T ss_pred             HHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999 899999999999999988888   99999988888888777766655443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.83  E-value=2.1e-17  Score=175.05  Aligned_cols=164  Identities=13%  Similarity=0.064  Sum_probs=130.4

Q ss_pred             HHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc-----Cchh-hHHHHHHHHHHHH
Q 039943           34 NEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCV-----GRYP-MIGFGCITYLLGV  107 (581)
Q Consensus        34 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~-----Grr~-~~~~~~~~~~~~~  107 (581)
                      ..+.+...+.-...-+|.|++ +.|+|.++.|++..+...  .+..++.|+++|| +     |||| .+.++.++.+++.
T Consensus         7 l~~~~~~~~~~~~~~~~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l~~   82 (402)
T PRK11902          7 LGFASGLPLALTSGTLQAWMT-VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAASI   82 (402)
T ss_pred             HHHHHhhhHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHHHH
Confidence            344445555556677889997 459999999999777665  6889999999999 7     8875 7888888888877


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      ..+.+..+                    ..+++.+++..++.++..+...+...+++.|.+|+       ++|+++.++.
T Consensus        83 ~~l~~~~~--------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~-------~~r~~~~~~~  135 (402)
T PRK11902         83 AAMAFCPP--------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP-------EERGAGAAVK  135 (402)
T ss_pred             HHHHhcCc--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-------hhhhHHHHHH
Confidence            77777641                    12566677777778888888899999999999988       6699999999


Q ss_pred             HHHHhhHHHHHHHHHHhhhcc-ccchhhhHHHHHHHHHHHHH
Q 039943          188 YVSVLASSMVAVTCIVYIQDN-LGWKVGFGVPAVISLLSALS  228 (581)
Q Consensus       188 ~~~~~~g~~~~p~~~~~i~~~-~g~~~~f~~~~~~~~i~~~~  228 (581)
                      ..+.++|..+++.+++++.+. +|||..|++.++..++..+.
T Consensus       136 ~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        136 VLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988875 59999999988766555443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.82  E-value=1.6e-18  Score=180.75  Aligned_cols=164  Identities=17%  Similarity=0.117  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      .+...+..+......+...+.+|.++++++|++..+.+++.+++.++..++.++.|+++|| +|||+++.++.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHH
Confidence            4455555566666666677777778999999999999999999999999999999999999 699999999999999998


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      +++++++.                      +++.+++.|+++|++.+. .+...++++|.+|+       ++|++..++.
T Consensus        82 ~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-------~~r~~~~~~~  131 (366)
T TIGR00886        82 LWAGLAVQ----------------------SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPK-------KIQGTALGLA  131 (366)
T ss_pred             HHHHHHhh----------------------hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCH-------hhhhHHHHHH
Confidence            88887650                      467788899999999665 45678899999988       6699999998


Q ss_pred             HHHHhhHHHHHHHHHHhhhc----------cccchhhhHH-HHHHH
Q 039943          188 YVSVLASSMVAVTCIVYIQD----------NLGWKVGFGV-PAVIS  222 (581)
Q Consensus       188 ~~~~~~g~~~~p~~~~~i~~----------~~g~~~~f~~-~~~~~  222 (581)
                      ....++|..+++.+++.+..          ..+|++.|++ .+++.
T Consensus       132 ~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~  177 (366)
T TIGR00886       132 AGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGIL  177 (366)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH
Confidence            88888888888877766554          2489999844 34433

>TIGR00896 CynX cyanate transporter

Probab=99.81  E-value=6.8e-18  Score=175.57  Aligned_cols=145  Identities=13%  Similarity=0.187  Sum_probs=122.0

Q ss_pred             hHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccc
Q 039943           47 PNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQ  126 (581)
Q Consensus        47 ~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (581)
                      ..+.+.+.+++|++.++.+++.+++.++..++.++.|+++|| +||||++..+.++..++.+.+ .++            
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~~------------   85 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SAP------------   85 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hhc------------
Confidence            334446777999999999999999999999999999999999 799999999998888777666 444            


Q ss_pred             cccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhh
Q 039943          127 LRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQ  206 (581)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~  206 (581)
                                 +.+.+++.|++.|++.+...+..+..+.|.+|+        +|+++.++++...++|..+++.+++.+.
T Consensus        86 -----------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~i~~~~~~~l~  146 (355)
T TIGR00896        86 -----------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ--------RVGLMTGLYSMALMGGAALAAAATVPLA  146 (355)
T ss_pred             -----------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       567788999999999998888888888888753        4899999999999999999999998887


Q ss_pred             ccc--cchhhhHHHHHHHHH
Q 039943          207 DNL--GWKVGFGVPAVISLL  224 (581)
Q Consensus       207 ~~~--g~~~~f~~~~~~~~i  224 (581)
                      +..  +||+.|.+.++..++
T Consensus       147 ~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896       147 QHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             HhhhhhHHHHHHHHHHHHHH
Confidence            764  399888776654443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.80  E-value=1.1e-16  Score=170.32  Aligned_cols=445  Identities=9%  Similarity=0.003  Sum_probs=248.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhc----cccCchhhHHHH-HHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLAD----SCVGRYPMIGFG-CIT  102 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laD----r~~Grr~~~~~~-~~~  102 (581)
                      ++.+....+--++++-...+++++|+ +++|.+..+.+++..+..+...+.+|+.|+++|    | +||||.++.+ .+.
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr-~GRRrp~il~g~~~   83 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSR-FGRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCC-CCChHHHHHHHHHH
Confidence            44455555556677666778888887 579999999999999999999999999999999    6 6999998875 556


Q ss_pred             HHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhH
Q 039943          103 YLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS  182 (581)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (581)
                      .+++.++++++.+......    |..  ...........++.+..+..++....++...++++|..|+++     ++++.
T Consensus        84 ~~~~l~ll~~~~~~~~~~~----~~~--~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~-----~~~~~  152 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLFG----DNL--DKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDA-----RRTRI  152 (477)
T ss_pred             HHHHHHHHHhCchhhhhcc----ccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchh-----HHHHH
Confidence            6667777777653211000    000  000011122344555556667888888889999999999854     34578


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhh--hcc-------------ccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhh
Q 039943          183 YFSWYYVSVLASSMVAVTCIVYI--QDN-------------LGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLT  247 (581)
Q Consensus       183 ~~~~~~~~~~~g~~~~p~~~~~i--~~~-------------~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  247 (581)
                      ++++.+...++|+.+|+.++++.  .+.             .+.+..|++.+++.++..++..+..++.+..++++ ..+
T Consensus       153 a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~-~~~  231 (477)
T TIGR01301       153 ANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDD-FIN  231 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcccc-chh
Confidence            89999999999999999988764  211             15688899888877777665555443322111100 000


Q ss_pred             hHHHHHHHHHhhccccccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHh
Q 039943          248 GLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKA  327 (581)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (581)
                      +              +..           +.++    .+.                       ...++++.....+--|.
T Consensus       232 ~--------------~~~-----------~~~~----~~~-----------------------~~~~~~i~~~~~~mP~~  259 (477)
T TIGR01301       232 S--------------EAA-----------PPSK----HGE-----------------------EAFFGELFGAFKYLPRP  259 (477)
T ss_pred             h--------------hcc-----------cccc----cch-----------------------hhhHHHHHHHHHHCCHH
Confidence            0              000           0000    000                       00000000000011122


Q ss_pred             HHhhHhHHHhhHHHHHhhcC-CChhheecccCC-CCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCC
Q 039943          328 LIKVIPLWSTGIMIAVTISQ-SSFPVLQASTMD-RHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQ  405 (581)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~  405 (581)
                      +.+++....+.-..|+.+.. .+.++-+..+-. ......|+. ...++........+...+...+..++.+|+++|   
T Consensus       260 m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~-gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~---  335 (477)
T TIGR01301       260 VWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDD-GVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAG---  335 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence            22333232333333333333 333322211100 000001100 000111111111111123334455577776643   


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccch-HHHHHHHHHHHHHHHHHHhhhhheeecccCC
Q 039943          406 LRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMS-AMWVLPYHVLSGLAMAFNMIGQIEFYYSELP  484 (581)
Q Consensus       406 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P  484 (581)
                         +..-.++.++.++++....+......+. ..++-+ +.--.++.. .+..+..+...|+..+......++.+.+..|
T Consensus       336 ---k~~~~~s~~~~~~~l~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~  410 (477)
T TIGR01301       336 ---KRLWGIVNIILAICLAATVLVTYVAKNS-RYYDGD-GESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS  410 (477)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHhhhhcc-cccccc-ccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc
Confidence               1233666666766766555433210000 000000 000011112 3566677788888888888889999999988


Q ss_pred             c--hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhcccc
Q 039943          485 R--SMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYG  561 (581)
Q Consensus       485 ~--~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~  561 (581)
                      +  +..|..+|+.|++-.+.+++.+...+.+.+..+.              +...++.+-++..+++.+..++..|+.+
T Consensus       411 ~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~--------------~~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       411 NLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG--------------GNLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            5  4569999999999999999999888876554431              1234677777778888888887777654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.80  E-value=1.1e-16  Score=169.79  Aligned_cols=169  Identities=13%  Similarity=0.122  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHH
Q 039943           30 FIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVL  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~  109 (581)
                      .+....+...+.. ++...+.+.+++++|++..+.+++.+.+.+++.++.++.|++.|| +|||+++..+.++++++..+
T Consensus         7 ~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         7 LITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHH
Confidence            3333334444443 455455567789999999999999999999999999999999999 79999999999999999887


Q ss_pred             HHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHH
Q 039943          110 LWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYV  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  189 (581)
                      +..+..                    ..+++.+++.|++.|+|.|...+...+++.+..|+       ++|++..++.+.
T Consensus        85 ~~~~~~--------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  137 (410)
T TIGR00885        85 FWPAAE--------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE-------STATRRLNLAQS  137 (410)
T ss_pred             HHHHHh--------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH-------hHHHHHHHHHHH
Confidence            655431                    12678899999999999999999999999998877       568888999999


Q ss_pred             HHhhHHHHHHHHHHhhhcc--------------------------ccchhhhHHHHHHHHHHHH
Q 039943          190 SVLASSMVAVTCIVYIQDN--------------------------LGWKVGFGVPAVISLLSAL  227 (581)
Q Consensus       190 ~~~~g~~~~p~~~~~i~~~--------------------------~g~~~~f~~~~~~~~i~~~  227 (581)
                      ..++|..++|.+++.+...                          .+||++|.+.+++.++..+
T Consensus       138 ~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~  201 (410)
T TIGR00885       138 FNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL  201 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998877422                          3699999887775554433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.79  E-value=2.9e-17  Score=170.87  Aligned_cols=157  Identities=17%  Similarity=0.091  Sum_probs=121.5

Q ss_pred             hhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc----cCchhhH-HHHHHHHHHHHHHHHHhhhcccC
Q 039943           45 LMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSC----VGRYPMI-GFGCITYLLGVVLLWLTTILSQA  119 (581)
Q Consensus        45 ~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~----~Grr~~~-~~~~~~~~~~~~~~~~~~~~~~~  119 (581)
                      +.....+.+.+++|+|.++.++.... .+...+ .++.|.++||+    +||||.+ +.+.++.++....+++..+    
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~----   79 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP----   79 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc----
Confidence            33444445556889999999998655 444444 89999999993    2899974 5667777777666666541    


Q ss_pred             CCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHH
Q 039943          120 QPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAV  199 (581)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p  199 (581)
                                      ..+++.+....++.+++.+...+...++++|++|+       ++|+++.++...+.++|..+++
T Consensus        80 ----------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~  136 (356)
T TIGR00901        80 ----------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSD-------EELGYGSTIYIVGYRAGMLLSG  136 (356)
T ss_pred             ----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hhhchHHHHHHHHHHHHHHHHH
Confidence                            12566677777788888888889999999999988       6799999999999999999999


Q ss_pred             HHHHhhhcccc--------chhhhHHHHHHHHHHHHHHH
Q 039943          200 TCIVYIQDNLG--------WKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       200 ~~~~~i~~~~g--------~~~~f~~~~~~~~i~~~~~~  230 (581)
                      .+++++....+        ||..|++.++..++..+..+
T Consensus       137 ~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       137 SLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             HHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            99999888777        99999998887666554433

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.79  E-value=3.2e-17  Score=170.08  Aligned_cols=154  Identities=12%  Similarity=0.080  Sum_probs=136.1

Q ss_pred             hhhHHHHHhhhhcCCcchh-hHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 039943           45 LMPNMILYLCGEYNMETTA-GTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPA  123 (581)
Q Consensus        45 ~~~~l~~yl~~~~~~s~~~-~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (581)
                      ..+++.+|+.+++|++.+| .|.+.++++.+++++.+++|+++|| +|-|+++..+.+.+.+..++++++.         
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~---------  113 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGT---------  113 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHH---------
Confidence            4466778999999999999 9999999999999999999999999 7999999999999999999999988         


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHH
Q 039943          124 CDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIV  203 (581)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~  203 (581)
                                    ++..+.+.|++.|++.|+.. +...++..++|+       ++|+++.++...+..+|.++++++++
T Consensus       114 --------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~-------kER~ratsi~~sg~~vG~~Ia~~L~q  171 (511)
T TIGR00806       114 --------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP-------SRYQRAAAYSRAAVLLGVFLSSVLGQ  171 (511)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          78899999999999999999 999999999999       78999999999999999999999999


Q ss_pred             hhhccccchhhhHHH---HHHHHHHHHHHHh
Q 039943          204 YIQDNLGWKVGFGVP---AVISLLSALSFFL  231 (581)
Q Consensus       204 ~i~~~~g~~~~f~~~---~~~~~i~~~~~~~  231 (581)
                      + ...+||++-+.+.   .....++++..++
T Consensus       172 l-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       172 L-LVTLGWISYSTLNIISLVFMTFSVFLALF  201 (511)
T ss_pred             H-HHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            9 4567888765554   3334445444444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.78  E-value=3.6e-18  Score=172.95  Aligned_cols=406  Identities=15%  Similarity=0.076  Sum_probs=228.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchh
Q 039943           59 METTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQ  138 (581)
Q Consensus        59 ~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (581)
                      +++.-.+.+..+..++..+|+++.||++|| +|||+++...+++++++++++++..                +.++...-
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~----------------~~~~~~~~  143 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSV----------------GTTSPLGV  143 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCC----------------CCCCCcch
Confidence            677888999999999999999999999999 7999999999999999999776654                11222235


Q ss_pred             HHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhh---c-c------
Q 039943          139 LMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQ---D-N------  208 (581)
Q Consensus       139 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~---~-~------  208 (581)
                      +++++..|+++|+|.|+-+|...+..+|...+       ++||...+........|...|.++.-.+.   + .      
T Consensus       144 m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~-------~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~  216 (538)
T KOG0252|consen  144 MMTLCFFRFLLGIGIGGDYPLSATIMSESANK-------KTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPST  216 (538)
T ss_pred             hhHHHHHHHHhhccccCCCcchHHHhhhhhhh-------ccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCC
Confidence            68899999999999999999999999998776       66888777666666666655554433321   1 1      


Q ss_pred             -----ccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHH-HHHHHHHhhccccccCccccccccCCCCCccc
Q 039943          209 -----LGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLI-QVLVASYKNRHIKLSSQTTEEMYHPRKGSMLL  282 (581)
Q Consensus       209 -----~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (581)
                           .=||..|.+.++..++.+.. -+..|+       .+..+... +....+. +   +..+..   ..+.++...  
T Consensus       217 ~~~ld~vWRl~~glg~vpa~~~ly~-Rl~M~E-------t~~Y~al~~~~~~~a~-~---d~~k~~---~~~~~~~~~--  279 (538)
T KOG0252|consen  217 YPHLDGVWRIIFGLGAVPALLVLYF-RLKMPE-------TARYTALVSKKLKQAA-G---DMKKVL---SVDIEAEST--  279 (538)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHh-hhcCCc-------chhHHHHhhcCHhhhh-h---cccccc---ccccchhhc--
Confidence                 12888887776655443322 111111       11111000 0000000 0   000000   000000000  


Q ss_pred             cCCcchhhhhhhhhccCCCCCCCCCCC-CCCCCCccchhhHH-HHHhHHhhHhHHHhhHHHHHhhcC--CChhheecccC
Q 039943          283 VPSENLRCLNKACIIKHPGQDSTPDRR-ASNPWSLCTVDQVE-ELKALIKVIPLWSTGIMIAVTISQ--SSFPVLQASTM  358 (581)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  358 (581)
                                           .+.... .+++.+++...... .-++++.       ....|+.+..  .+.-+++..-.
T Consensus       280 ---------------------~~~~~~~~~~~~~~F~~~f~~~hg~~Llg-------t~~~WFllDiafy~~nL~~s~I~  331 (538)
T KOG0252|consen  280 ---------------------AESDVPPPSNSFGLFSRLFLRWHGKHLLG-------TAGTWFLLDIAFYGQNLFQSVIF  331 (538)
T ss_pred             ---------------------cccCCCCcccccchHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhccccHHHHHH
Confidence                                 000000 11222212111111 1122222       2222332222  11111221111


Q ss_pred             CCCCCCCcccCcccc------cchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 039943          359 DRHITPNFEIPSGSF------GIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETV  432 (581)
Q Consensus       359 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  432 (581)
                      + .+  ++.-.....      ...+.+.......-.-++...+.+++||+       .....|++++++.+++.+..-+.
T Consensus       332 ~-~i--g~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk-------~iq~~GF~~~~i~~~~~~~~y~~  401 (538)
T KOG0252|consen  332 S-AI--GVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK-------YIQLMGFFIMTIFFFVIAGPYNQ  401 (538)
T ss_pred             H-hh--ccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH-------HHHHhhHHHHHHHHHHHcCCccc
Confidence            1 00  000011111      11112221211111223334466776666       57788888888887776652210


Q ss_pred             HhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 039943          433 RRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNA  512 (581)
Q Consensus       433 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~  512 (581)
                         .              .......++.-+....+......+...+..|.+|.+.||+.-|+...+.-+|.+++......
T Consensus       402 ---~--------------~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~  464 (538)
T KOG0252|consen  402 ---L--------------ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLY  464 (538)
T ss_pred             ---c--------------cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhH
Confidence               0              00111222222333345566666777888899999999999999999999999999887766


Q ss_pred             hhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhh
Q 039943          513 VDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCREEASEALD  572 (581)
Q Consensus       513 i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  572 (581)
                      ..+.       + +|.   ..++..++++++++++++.++.+++. |+++++++|.++..
T Consensus       465 ~t~~-------~-yp~---~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~leei~~e~  512 (538)
T KOG0252|consen  465 LTDH-------N-YPP---NIGVRNVFIILAGCMLLGILFTLLIP-ETKGKSLEEISNEE  512 (538)
T ss_pred             hhhc-------c-CCc---cccchHHHHHHHHHHHHhHheeEEee-cccccCHHHhcChh
Confidence            6541       1 111   22457789999999999988877765 99999998875543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.77  E-value=6.8e-16  Score=161.98  Aligned_cols=384  Identities=15%  Similarity=0.127  Sum_probs=217.7

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHH
Q 039943           31 IIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLL  110 (581)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~  110 (581)
                      +....++..+.+-...++++.|++ +.|+|..|.|.+.++..++..+++++.|+++||...+||.+.+..++.++.....
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            334444555555556788999997 5789999999999999999999999999999995346777777666666555555


Q ss_pred             HHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHH
Q 039943          111 WLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVS  190 (581)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  190 (581)
                      ....                       +.+.++...++..+...+..|...++.-+...+         ++.-++-....
T Consensus        86 ~~~~-----------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~---------~~~~YG~iRlw  133 (400)
T PF03825_consen   86 AFSS-----------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD---------RGKDYGRIRLW  133 (400)
T ss_pred             HHhc-----------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc---------ccCCCCcchhh
Confidence            4444                       566667777778888888888888887777654         33335555555


Q ss_pred             HhhHHHHHHHH-HHhhhcccc---chhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhccccccC
Q 039943          191 VLASSMVAVTC-IVYIQDNLG---WKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSS  266 (581)
Q Consensus       191 ~~~g~~~~p~~-~~~i~~~~g---~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (581)
                      .++|-+++... ++++....+   ..+.+++.+...++.....+. .|+.+.++..++..++                  
T Consensus       134 GSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~-lp~~~~~~~~~~~~~~------------------  194 (400)
T PF03825_consen  134 GSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF-LPKTPPKRSAKESVKK------------------  194 (400)
T ss_pred             hhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh-CCCCccccccCCCccc------------------
Confidence            55666655433 233332222   234555555443333222222 2221111000000000                  


Q ss_pred             ccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHHHhhc
Q 039943          267 QTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTIS  346 (581)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (581)
                                           ....+..+.                         .++.+...-.+..++.+......+.
T Consensus       195 ---------------------~~~~~~~~l-------------------------lk~~~~~~Fll~~~l~~~~~~~~~~  228 (400)
T PF03825_consen  195 ---------------------LLGLDALKL-------------------------LKNPRFLVFLLAAFLIGISHAAYYT  228 (400)
T ss_pred             ---------------------ccchHHHHH-------------------------hcCccHHHHHHHHHHHHHHHHHHHH
Confidence                                 000000000                         0011111111111122222222121


Q ss_pred             CCChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHH
Q 039943          347 QSSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAW  426 (581)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~  426 (581)
                      ..+.++.+......          ...+....+..+.=+|+     -...+|.-+|   .+..+.+.++.+..++=..++
T Consensus       229 f~~~yl~~~gg~~~----------~~~g~~~~l~~~aEi~~-----f~~~~~~~~r---~g~~~ll~~a~~~~~vR~~l~  290 (400)
T PF03825_consen  229 FFSIYLQELGGYSG----------STIGILWALGVVAEIPF-----FFFSGRFLKR---FGIKWLLLLALVAYAVRWLLY  290 (400)
T ss_pred             HHHHHHHHcccchh----------hHHHHHHHHHHHHHHHH-----HHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHH
Confidence            13333222111000          11111111111111111     1133344444   566678888888888887777


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCcccch--HHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHH-HHHHHH
Q 039943          427 AITETVRRNIAINEGISDDPRAVVKMS--AMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGL-GMSVAS  503 (581)
Q Consensus       427 ~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~-~~~ig~  503 (581)
                      ....+                   +..  +....+...++|+..++.......|+.+.+|++.|++++++++. ...+|+
T Consensus       291 a~~~~-------------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~  351 (400)
T PF03825_consen  291 AYFSD-------------------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGG  351 (400)
T ss_pred             HHhcC-------------------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHH
Confidence            66421                   111  12223345679999999999999999999999999999998765 467999


Q ss_pred             HHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 039943          504 LVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKA  559 (581)
Q Consensus       504 ~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~  559 (581)
                      .+|..+.|.+.|..+.++.          ..+..++.+.+++.++..+.++++.|+
T Consensus       352 ~iG~~igG~l~~~~g~~~~----------~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  352 AIGSLIGGWLYDAFGARGM----------FDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHhcchhh----------hhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            9999999999986542211          123556777777777777777777665

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.76  E-value=1.4e-21  Score=210.11  Aligned_cols=397  Identities=14%  Similarity=0.106  Sum_probs=227.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHH
Q 039943           62 TAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLML  141 (581)
Q Consensus        62 ~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (581)
                      .+.++..+...++..+|.+++|+++|| +|||++++++.++..++.++..+++..                    .+.+.
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~~--------------------~~~~~  104 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPSY--------------------NNFWM  104 (451)
T ss_pred             HHHHHHHHHHHhhhccccccccccccc-ccccccccccccccccccccccccccc--------------------ccccc
Confidence            346889999999999999999999999 699999999999999999999988721                    25778


Q ss_pred             HHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhcc---ccchhhhHHH
Q 039943          142 LYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDN---LGWKVGFGVP  218 (581)
Q Consensus       142 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~---~g~~~~f~~~  218 (581)
                      ++++|++.|++.|+..+..+.++.|..|+       +.|+...++......+|..++..+.-.+.+.   .+||+.+.+.
T Consensus       105 ~~~~R~~~G~~~g~~~~~~~~~~~E~~~~-------~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~  177 (451)
T PF00083_consen  105 LLIGRFLIGFGIGGAYVVSPIYISEIAPP-------KHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFG  177 (451)
T ss_pred             ccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999998       6799999998888889988888665444332   4599999888


Q ss_pred             HHHHHHHHHHHHhc--CCcccccCCCCChhhhHHHHHHHHHhhccccccCccccccccCCCCCccccCCcchhhhhhhhh
Q 039943          219 AVISLLSALSFFLA--SPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACI  296 (581)
Q Consensus       219 ~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (581)
                      ++..++.++...+.  .|++...+.+.++.++..+       +  .+..+..+++..+..+   ..              
T Consensus       178 ~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~-------~--~~~~~~~~~~~~~~~~---~~--------------  231 (451)
T PF00083_consen  178 AIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLR-------K--LRGKEIEDEEIEEIKA---EK--------------  231 (451)
T ss_pred             ccccccccccccccccccceecccccccccccccc-------c--cccccccccccccccc---cc--------------
Confidence            77665444333222  2333222222211111110       0  0000000000000000   00              


Q ss_pred             ccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHH-HhhcC-CChhheecccCCCCCCCCcccCccccc
Q 039943          297 IKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIA-VTISQ-SSFPVLQASTMDRHITPNFEIPSGSFG  374 (581)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (581)
                        +      +..+...+|+....... .+++....+.+...+.... ..... .+..... ...+...     .......
T Consensus       232 --~------~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~~-----~~~~~~~  296 (451)
T PF00083_consen  232 --K------ESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNSF-----LATLILG  296 (451)
T ss_pred             --c------cccccceeeeecccccc-ccccccccccccccccccccccccccccccccc-ccccccc-----ccccccc
Confidence              0      00000122222111100 1122222221211111111 00101 1111111 0000000     0011111


Q ss_pred             chhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhccCCCCCCCCcccch
Q 039943          375 IFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWA-ITETVRRNIAINEGISDDPRAVVKMS  453 (581)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~  453 (581)
                      ....+..+        +...+.+|+|||+       .+..+..+++++++..+ ....     ..+ .       ....+
T Consensus       297 ~~~~~~~~--------~~~~~~~~~GRr~-------~~i~~~~~~~~~~~~~~~~~~~-----~~~-~-------~~~~~  348 (451)
T PF00083_consen  297 LVNFLGTL--------LAIFLIDRFGRRK-------LLIIGLLLMAICSLILGIIFFL-----GVS-S-------SSWWS  348 (451)
T ss_pred             cccccccc--------ccccccccccccc-------cccccccccccccccccccccc-----ccc-c-------ccccc
Confidence            11111111        1223677877773       55566666555555443 1100     000 0       00012


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCc
Q 039943          454 AMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKG  533 (581)
Q Consensus       454 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~  533 (581)
                      .+.+....+........+.+..+.+..|.+|.+.|+++.++...++++++++++.+.+.+.+..+               
T Consensus       349 ~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~---------------  413 (451)
T PF00083_consen  349 ILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG---------------  413 (451)
T ss_pred             cccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc---------------
Confidence            22222222222233345567778899999999999999999999999999999888777664321               


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhh
Q 039943          534 RYDYYYWLLAGLNMASFIYFLACCKAYGPCREEASEAL  571 (581)
Q Consensus       534 ~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  571 (581)
                       ....|.++++++++..++.+++.||+|+++.+|.+++
T Consensus       414 -~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  414 -GWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             -ccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence             1345778888999999999999999999999988765

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09848 glucuronide transporter; Provisional

Probab=99.75  E-value=1e-15  Score=164.51  Aligned_cols=151  Identities=11%  Similarity=0.069  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc---cCchhhH-HHHHHHHHHHHH
Q 039943           33 ANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSC---VGRYPMI-GFGCITYLLGVV  108 (581)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~---~Grr~~~-~~~~~~~~~~~~  108 (581)
                      +..+..++.+....++++.|+++.+|++..++|.+.++..+..++..++.|+++||.   +||||.+ .++.+...+...
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~   94 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV   94 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence            455556666666678888899999999999999999999999999999999999992   2677644 555554544443


Q ss_pred             HHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHH
Q 039943          109 LLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYY  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (581)
                      ++...+.  .              .........++...++.+++.+...+...++..+...++      ++|.+..+.-.
T Consensus        95 ~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~~r~~~~~~r~  152 (448)
T PRK09848         95 LVFWVPT--D--------------WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQP------QSRARLGAARG  152 (448)
T ss_pred             HHHhCcC--C--------------CCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCH------HHHHHHHHHHH
Confidence            3321110  0              000112344455566778888888888888877776653      35777655544


Q ss_pred             HH-----HhhHHHHHHHHHHhh
Q 039943          189 VS-----VLASSMVAVTCIVYI  205 (581)
Q Consensus       189 ~~-----~~~g~~~~p~~~~~i  205 (581)
                      .+     .+++..++|.+.+..
T Consensus       153 ~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848        153 IAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC
Confidence            33     345666677665543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.75  E-value=4.8e-15  Score=159.94  Aligned_cols=149  Identities=12%  Similarity=0.122  Sum_probs=121.5

Q ss_pred             hHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccc
Q 039943           47 PNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQ  126 (581)
Q Consensus        47 ~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (581)
                      ....+++..++|-+ ....|+.....++..++.++.|+++|. ||||.+++.+.++..+|.++++.++            
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~------------  129 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQ------------  129 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCC------------
Confidence            34456888899965 566789999999999999999999999 7999999999999999999999998            


Q ss_pred             cccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhh
Q 039943          127 LRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQ  206 (581)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~  206 (581)
                                 +...++++..+.|+|.|... .....++|..|.       +.|..+..+...........+|.++..+.
T Consensus       130 -----------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~-------k~R~~~~~~~~~~~i~~~~~~~~ia~~~~  190 (599)
T PF06609_consen  130 -----------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPN-------KWRGLGLAIASIPFIITTWISPLIAQLFA  190 (599)
T ss_pred             -----------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhccc-------chhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence                       88889999999999977765 456668999988       56777766665555555556777776666


Q ss_pred             ccccchhhhHHHHHHHHHHHHH
Q 039943          207 DNLGWKVGFGVPAVISLLSALS  228 (581)
Q Consensus       207 ~~~g~~~~f~~~~~~~~i~~~~  228 (581)
                      .+.+|||.|++.++...++++.
T Consensus       191 ~~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  191 AHSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             cCCCcchHHHHHHHHHHHHHHH
Confidence            6679999999998876665543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09669 putative symporter YagG; Provisional

Probab=99.75  E-value=2.4e-15  Score=161.42  Aligned_cols=174  Identities=11%  Similarity=0.139  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc---cCc-hhhHHHHHHHHHHHHH
Q 039943           33 ANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSC---VGR-YPMIGFGCITYLLGVV  108 (581)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~---~Gr-r~~~~~~~~~~~~~~~  108 (581)
                      +..+..++.+..+..+++.|+++.+|++..++|.+..+..+.-++..|+.|+++||.   +|| |+.++++.+..++...
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~   95 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL   95 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence            444555555666678899999999999999999999999999999999999999993   366 4556677777777766


Q ss_pred             HHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHH
Q 039943          109 LLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYY  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (581)
                      ++...++..                 .......+++..++.+.+.........++.+|+.+++      ++|.+..++..
T Consensus        96 l~f~~p~~~-----------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~------~eR~~l~~~r~  152 (444)
T PRK09669         96 LTFYTPDFG-----------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDP------RERHSLQSWRF  152 (444)
T ss_pred             HHHhCCCCC-----------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCH------HHHHHHHHHHH
Confidence            555443111                 1124556666666677666677777789999987553      46888888888


Q ss_pred             HHHhhHHHHHHHHHHhhhc-------cccchhhhHHHHHHHHHHHHHH
Q 039943          189 VSVLASSMVAVTCIVYIQD-------NLGWKVGFGVPAVISLLSALSF  229 (581)
Q Consensus       189 ~~~~~g~~~~p~~~~~i~~-------~~g~~~~f~~~~~~~~i~~~~~  229 (581)
                      ...++|..+++.+...+..       ..+|+..+.+.+++.++..+..
T Consensus       153 ~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~  200 (444)
T PRK09669        153 ALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCC  200 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence            8888888777765433322       2467777776666555544433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.74  E-value=2.5e-15  Score=162.57  Aligned_cols=173  Identities=9%  Similarity=0.045  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhc----cccCc-hhhHHHHHHHHHHHH
Q 039943           33 ANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLAD----SCVGR-YPMIGFGCITYLLGV  107 (581)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laD----r~~Gr-r~~~~~~~~~~~~~~  107 (581)
                      +..+..++.+..+.++++.|+++.+|++...+|.+..+..+.-++..|+.|+++|    | +|| |+.++++.+..+++.
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVL   91 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHH
Confidence            4445556666677788999999999999999999999999999999999999999    6 598 566667777777776


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      .++...++.+                 +......+++..++.+++.........++.+|+.+++      ++|.+..++-
T Consensus        92 ~llf~~p~~~-----------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~------~eR~~l~~~~  148 (473)
T PRK10429         92 FLLFSAHLFE-----------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDK------REREQLVPYP  148 (473)
T ss_pred             HHHHcCCCCC-----------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCH------HHHHHHHHHH
Confidence            6664433111                 1113445556666777888888888889999987543      5699988887


Q ss_pred             HHHHhhHHHHHHHHHHhhhc-------cccchhhhHHHHHHHHHHHHHH
Q 039943          188 YVSVLASSMVAVTCIVYIQD-------NLGWKVGFGVPAVISLLSALSF  229 (581)
Q Consensus       188 ~~~~~~g~~~~p~~~~~i~~-------~~g~~~~f~~~~~~~~i~~~~~  229 (581)
                      ....++|+.+.+.+...+.+       ..+|+....+.+++.++..+..
T Consensus       149 ~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~  197 (473)
T PRK10429        149 RFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIIT  197 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence            77777776666554433221       1245555555555444444333

>PTZ00207 hypothetical protein; Provisional

Probab=99.73  E-value=1.7e-14  Score=156.59  Aligned_cols=157  Identities=14%  Similarity=0.113  Sum_probs=121.3

Q ss_pred             hhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 039943           43 MGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPP  122 (581)
Q Consensus        43 ~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (581)
                      |++. ...+.+++++|++.++.+++.++.. ...++.++.|+++|| +|+|++++++.+++.++.++++++.+- .    
T Consensus        44 y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr-~G~R~vllig~ll~~iG~ll~ala~~~-~----  115 (591)
T PTZ00207         44 YAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDY-LGPRPIFVLSMTVFCLGTLLFALTFQE-V----  115 (591)
T ss_pred             HHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhcc-c----
Confidence            3433 3445678899999999999887744 344667789999999 799999999999999999999997310 0    


Q ss_pred             cccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHH-HHHH
Q 039943          123 ACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMV-AVTC  201 (581)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~p~~  201 (581)
                                  -..+++.+++.|++.|+|.+...+.....+.++||+        +|+.+.++...+.++|+++ +++.
T Consensus       116 ------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~--------~RG~a~Gi~~~~~gLGsaI~~~l~  175 (591)
T PTZ00207        116 ------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS--------NRGAVVAIMKTFTGLGSAILGSIQ  175 (591)
T ss_pred             ------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh--------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence                        012788899999999999999888889999999974        5899999999999999975 5555


Q ss_pred             HHhhhccccchhhhHHHHHHHHHHHHHH
Q 039943          202 IVYIQDNLGWKVGFGVPAVISLLSALSF  229 (581)
Q Consensus       202 ~~~i~~~~g~~~~f~~~~~~~~i~~~~~  229 (581)
                      .+++.+  +|+..|++.+++.++..++.
T Consensus       176 ~~l~~~--~~~~~fl~l~vl~~vv~ll~  201 (591)
T PTZ00207        176 LAFFSD--NTSAYFFFLMSFALVVGILA  201 (591)
T ss_pred             HHHHHH--hHHHHHHHHHHHHHHHHHHH
Confidence            555543  57777777766655444433

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.73  E-value=3.4e-15  Score=163.63  Aligned_cols=140  Identities=14%  Similarity=0.080  Sum_probs=126.9

Q ss_pred             hhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccc
Q 039943           55 GEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESA  134 (581)
Q Consensus        55 ~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (581)
                      +.+..+.....+..+++.++..+|+++.|.++|| +|||+++++++++.+++.++.++++                    
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~--------------------  169 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP--------------------  169 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence            5667788888999999999999999999999999 7999999999999999999999999                    


Q ss_pred             cchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhh
Q 039943          135 TWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVG  214 (581)
Q Consensus       135 ~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~  214 (581)
                         +++.+++.|++.|++.++...+...+++|.+++       +.|+.+..+ ......++.++|..++++..  +||+.
T Consensus       170 ---~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~-------~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~  236 (521)
T KOG0255|consen  170 ---NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSP-------KQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL  236 (521)
T ss_pred             ---cHHHHHHHHHHHHhhccchhHHhHhhheeecCc-------chhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence               899999999999999999999999999999999       679999998 77777888888888888877  89999


Q ss_pred             hHHHHHHHHHHHHH
Q 039943          215 FGVPAVISLLSALS  228 (581)
Q Consensus       215 f~~~~~~~~i~~~~  228 (581)
                      +++..+..++.++.
T Consensus       237 ~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  237 FWIISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988776666555

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.72  E-value=5.8e-16  Score=166.57  Aligned_cols=434  Identities=15%  Similarity=0.071  Sum_probs=250.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhH---HHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPN---MILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~---l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      |.+.+..++.++..+++...   +-..++++++.+..+.+|+.++......+..|+.+.+.|| +|.|++.++|.++..+
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHH
Confidence            56666777777777765533   3456678999999999999999999999999999999999 7999999999999999


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHH-HHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSA-LGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      |.++..+++                       +++.+++. =++.|+|.|..+......++.+|++        +|+.+.
T Consensus       124 g~~lssF~~-----------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k--------kR~lA~  172 (509)
T KOG2504|consen  124 GLLLSSFAT-----------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK--------KRALAT  172 (509)
T ss_pred             HHHHHHHHh-----------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH--------HHHHHH
Confidence            999999998                       66665555 5667899999999999999988764        799999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhccccc
Q 039943          185 SWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKL  264 (581)
Q Consensus       185 ~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (581)
                      ++...+..+|..+=|.+.-++.+..|||+.+++.+.+.+-......+.+|...+.++..++  +..+      .....+.
T Consensus       173 Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~--~~~~------~~~~~~~  244 (509)
T KOG2504|consen  173 GIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEK--DLRN------SAASVES  244 (509)
T ss_pred             hhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhh--hhcc------ccccccc
Confidence            9999999999999999999999999999999988777665555555544433332222100  0000      0000000


Q ss_pred             cCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchh-hHHHHHhHHhhHhHHHhhHHHHH
Q 039943          265 SSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVD-QVEELKALIKVIPLWSTGIMIAV  343 (581)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  343 (581)
                      .    ....+...........+ ..........+.+++..   +...+....+.+. ..++...+...+...+....+..
T Consensus       245 ~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~  316 (509)
T KOG2504|consen  245 T----PKPVELRISERDSGLKK-LSLSNLATLKRGPDKWR---NSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNV  316 (509)
T ss_pred             c----ccccccccccCCCCCCc-ccccchhhhhhCCcccc---ccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            0    00000000000000000 00000000000000000   0000000000011 11111111111111111111111


Q ss_pred             hhcCCChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHH
Q 039943          344 TISQSSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASM  423 (581)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~  423 (581)
                      .+...+.+.. ....+.... .  .....++..+.+..++...        ++++..     .+......++++.++++.
T Consensus       317 p~~~l~~~~~-~~g~~~~~a-a--~l~Siigi~~i~gRi~~G~--------laD~~~-----~~~~~~~~~~ll~~gl~~  379 (509)
T KOG2504|consen  317 PFVYLPSYAK-SLGLSSNDA-A--FLLSIIGVSDIIGRIILGL--------LADKPG-----IRALVLFLLTLLIAGLAR  379 (509)
T ss_pred             HHHHHHHHHh-hcCCChhhh-H--HHHHHHHHhhhhhhhhhhh--------hcCccc-----cchHHHHHHHHHHHHHHH
Confidence            0000111111 111111100 0  0001111122222222211        333321     233445566666666666


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHH
Q 039943          424 AAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVAS  503 (581)
Q Consensus       424 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~  503 (581)
                      ++....                      .+.+.++...++.|...+...........+..+.+.-+.+.|+..+++.++.
T Consensus       380 ~~~p~~----------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~  437 (509)
T KOG2504|consen  380 LFLPFA----------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGA  437 (509)
T ss_pred             HHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHH
Confidence            444332                      2455666667777877777777766778888999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 039943          504 LVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCR  564 (581)
Q Consensus       504 ~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~  564 (581)
                      .+++.+.+.+.|.++               +|+..|++.+++.+++..+.++...+.+++.
T Consensus       438 l~gpPiag~~~d~tg---------------~Y~~~f~~~g~~~~~s~~~~~~~~~~~~~~~  483 (509)
T KOG2504|consen  438 LVGPPIAGLLYDITG---------------NYDHAFYFCGLCFLLSAVLLLILRECLKRRE  483 (509)
T ss_pred             HcCcccceeeeeccC---------------CeeeehhhcChHHHHHHHHHHHhHHHHHhcc
Confidence            999999998877542               3677788888888887766555542444443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.72  E-value=2.6e-16  Score=174.84  Aligned_cols=200  Identities=16%  Similarity=0.267  Sum_probs=149.6

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      ++.++.......+......+......+.++++|+++.++.|++.+.+.+++.++.++.|+++|| +||||.+.+++++++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~~  109 (633)
T TIGR00805        31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIMG  109 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHHH
Confidence            3333344444455555666777777788899999999999999999999999999999999999 799999999999999


Q ss_pred             HHHHHHHHhhhccc-CC---------------CCccccc----------cccccccc--chhHHHHHHHHHHHHHhcccc
Q 039943          105 LGVVLLWLTTILSQ-AQ---------------PPACDQL----------RSDCESAT--WSQLMLLYSALGLMSLGGGGI  156 (581)
Q Consensus       105 ~~~~~~~~~~~~~~-~~---------------~~~~~~~----------~~~~~~~~--~~~~~~~~~~~~l~g~~~g~~  156 (581)
                      ++.+++++...+.. ..               ...|.+.          .++|+...  ...+..++++|+++|+|.+..
T Consensus       110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~  189 (633)
T TIGR00805       110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI  189 (633)
T ss_pred             HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence            99999888642110 00               0001000          00111111  113567889999999999999


Q ss_pred             chhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccc----------------------cchhh
Q 039943          157 RSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNL----------------------GWKVG  214 (581)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~----------------------g~~~~  214 (581)
                      .+...+++.|.+|+       ++|+...++++.+..+|.++|+++++++.+.+                      +|+..
T Consensus       190 ~~~~~~~i~d~~~~-------~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~  262 (633)
T TIGR00805       190 FPLGISYIDDFAKS-------KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIG  262 (633)
T ss_pred             hhcCchhhhccCCc-------cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHH
Confidence            99999999999998       66999999999999999999999999877532                      26667


Q ss_pred             hHHHHHHHHHHHHHHHhc
Q 039943          215 FGVPAVISLLSALSFFLA  232 (581)
Q Consensus       215 f~~~~~~~~i~~~~~~~~  232 (581)
                      |++.+++.++..+.++..
T Consensus       263 Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       263 FLICGGVALLTSIPFFFF  280 (633)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            877777666555444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.71  E-value=1.9e-14  Score=151.74  Aligned_cols=176  Identities=12%  Similarity=-0.038  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHH--HHHHHHHHHHHHHHH-HHhhccccCchhhHHHHHHH-H
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNV--LLIWTAATNFLPIIG-AFLADSCVGRYPMIGFGCIT-Y  103 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i--~~~~~~~~~i~~~~~-G~laDr~~Grr~~~~~~~~~-~  103 (581)
                      +..+....+.+.+-+..+.+.+|.|++ +.|+|.++.|..  .....+...+..|+. ++..|| +||||.+++.+.+ .
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHH
Confidence            344455556666776667788888886 569999999997  355577776677777 558999 6999997666533 2


Q ss_pred             HHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          104 LLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                      .+....+.....                   .......++....+.++..+...+...++..|..++       ++++..
T Consensus        81 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~-------~~~~~~  134 (390)
T TIGR02718        81 SACLASLALVGP-------------------DVAGAGWAVGLLACASLASATQDIATDGMAAEHFNG-------RTLAKG  134 (390)
T ss_pred             HHHHHHHHcCCc-------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hhhhHH
Confidence            222222222110                   001223334445555566666677777777776665       456777


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh
Q 039943          184 FSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       184 ~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      .+....+..+|..+|+...+++.+..||+..|++.++..++..+..+.
T Consensus       135 ~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       135 NAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            777777778899999988889999999999999988876665554433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.71  E-value=9.1e-15  Score=157.52  Aligned_cols=386  Identities=11%  Similarity=0.028  Sum_probs=219.4

Q ss_pred             CCCCchHH-HHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccC-----chhh
Q 039943           22 KGGLRTLP-FIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVG-----RYPM   95 (581)
Q Consensus        22 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~G-----rr~~   95 (581)
                      ..+++..+ .+....+.+.+. +.+...+++++++++|++.++.+...+...+...+-.+ .|.++|| ++     ||+.
T Consensus        21 ~~~~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~   97 (468)
T TIGR00788        21 SFHPRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWY   97 (468)
T ss_pred             cCCcchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHH
Confidence            33344433 333455667776 66777888899999999999999999999998888655 9999999 67     7777


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcc
Q 039943           96 IGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENK  175 (581)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~  175 (581)
                      ++++.++.. ...+..++.                    .+.+.....+.+++.+++.+....+..++..|..+ +++  
T Consensus        98 l~~~~~l~~-~~~~~~l~~--------------------~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~--  153 (468)
T TIGR00788        98 LVLSGLLGS-AILYGLLPG--------------------KVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP--  153 (468)
T ss_pred             HHHHHHHHH-HHHHHhccc--------------------ccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC--
Confidence            777765553 122222221                    01123344447888999999999999999999998 332  


Q ss_pred             cchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHH
Q 039943          176 SKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVA  255 (581)
Q Consensus       176 ~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (581)
                        +.++...+..+...++|..+|+.++|++.+..+|+..|++.+...++..+...+..++.....|+.+.....      
T Consensus       154 --~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~------  225 (468)
T TIGR00788       154 --SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEM------  225 (468)
T ss_pred             --CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchh------
Confidence              445556667777788999999999999999899999999988776666443333322110011110000000      


Q ss_pred             HHhhccccccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHH
Q 039943          256 SYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLW  335 (581)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (581)
                                       +...     ...    ...+..+.                .++.  .......+.....+.+ 
T Consensus       226 -----------------~~~~-----~~~----~~~~~~~~----------------~~~~--l~~~l~~~~i~~~l~f-  260 (468)
T TIGR00788       226 -----------------NMAL-----LTL----GVLANVKV----------------QILG--LRGAIQLLEIAKPLIF-  260 (468)
T ss_pred             -----------------hhhh-----hhh----hHHHHHHH----------------HHHH--HHHHHhcHHHHHHHHH-
Confidence                             0000     000    00000000                0000  0000001111111111 


Q ss_pred             HhhHHHHHhhcC--CChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHH
Q 039943          336 STGIMIAVTISQ--SSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMG  413 (581)
Q Consensus       336 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~  413 (581)
                        ..+.+.....  .+.++.+..    .++    .++...+.......+ .    ..+...+.+|+.+|   .+.++.+.
T Consensus       261 --ifl~~~~~~~~~~~~f~~~~~----~lG----~s~~~~G~~~~~~~v-~----~i~g~~~~~~~~~~---~~~r~~l~  322 (468)
T TIGR00788       261 --IFLSYANLPGASGSVFCATTQ----CLP----GGPSFSGMSKVVGNL-G----SLCGVGGYDRFLKT---FPYRLLFG  322 (468)
T ss_pred             --HHHHHhhcCCCCceeEEEEcc----cCC----CCcchhhhHHHHHHH-H----HHHHHHHHHHHHhh---CCHHHHHH
Confidence              1110111111  222222211    121    333334333322221 1    11122244444444   56667788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHH
Q 039943          414 IGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASA  493 (581)
Q Consensus       414 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g  493 (581)
                      ++.++.+++.+....... +  .....|         ..+.+++....++.+++.++...+...++.+.+|++.+|+..+
T Consensus       323 ~~~~l~~~~~~~~~~l~~-~--~~~~~g---------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~a  390 (468)
T TIGR00788       323 VTTLLYTLSSLFDLILVK-R--WNLAFG---------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFA  390 (468)
T ss_pred             HHHHHHHHHHhCceeeee-c--cccccC---------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHH
Confidence            887777766543221100 0  000000         0122344445677788888888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhh
Q 039943          494 LHGLGMSVASLVASFIMNAVDEIT  517 (581)
Q Consensus       494 ~~~~~~~ig~~i~~~i~~~i~~~~  517 (581)
                      +.+...++|..+++.+.+.+.+..
T Consensus       391 l~~s~~~lg~~v~~~~gg~l~~~~  414 (468)
T TIGR00788       391 LLASILHLGSSVSGFLGVLLMETI  414 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999998888887654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.70  E-value=8.8e-15  Score=147.14  Aligned_cols=136  Identities=11%  Similarity=0.095  Sum_probs=119.7

Q ss_pred             hhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 039943           44 GLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPA  123 (581)
Q Consensus        44 ~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (581)
                      ...-.+.+.+++.|+++..|++++..++..++.++.++.|++.+| +|+|+.++.++.++++|..+..=++         
T Consensus        30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa---------   99 (422)
T COG0738          30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAA---------   99 (422)
T ss_pred             hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhh---------
Confidence            355667788889999999999999999999999999999999999 7999999999999999998886554         


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHH
Q 039943          124 CDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIV  203 (581)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~  203 (581)
                                 +..++..++.+.++.|.|.+..+.+...+++.+.+++       .-..-.++.+....+|++++|++++
T Consensus       100 -----------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~-------~a~~rlnl~q~fn~lGa~~gp~~g~  161 (422)
T COG0738         100 -----------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE-------SAAFRLNLAQAFNGLGAILGPLLGS  161 (422)
T ss_pred             -----------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch-------hHHHHHHHHHHhhhhHHHHHHHHHH
Confidence                       2347889999999999999999999999999999883       3555567777788899999999999


Q ss_pred             hhhc
Q 039943          204 YIQD  207 (581)
Q Consensus       204 ~i~~  207 (581)
                      ++..
T Consensus       162 ~lil  165 (422)
T COG0738         162 SLIL  165 (422)
T ss_pred             HHHH
Confidence            8776

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.70  E-value=7.1e-16  Score=152.95  Aligned_cols=119  Identities=13%  Similarity=-0.010  Sum_probs=107.2

Q ss_pred             cCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccc
Q 039943           57 YNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATW  136 (581)
Q Consensus        57 ~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (581)
                      .+.+..-+|.+-+.|.+..++.++..|.++|| +|||++++++++..++..++.+++.                      
T Consensus        63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S~----------------------  119 (451)
T KOG2615|consen   63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALSR----------------------  119 (451)
T ss_pred             ccccchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence            33455668999999999999999999999999 6999999999999999888888888                      


Q ss_pred             hhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhc
Q 039943          137 SQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQD  207 (581)
Q Consensus       137 ~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~  207 (581)
                       ++..++++|++.|+.-|-. ....++++|.+++       +.|+.+++....+..+|..+||.++|++.+
T Consensus       120 -~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~se-------k~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  120 -NFAAFVLARFLGGIFKGNL-SVIRAIISDVVSE-------KYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             -HHHHHHHHHHhhhhccCch-HHHHHHHHhhcCh-------hhccceeeeeehhhhcchhhcchhhhHHHh
Confidence             7778888899999998765 6788999999998       669999999999999999999999999987

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.69  E-value=4.4e-15  Score=158.64  Aligned_cols=356  Identities=13%  Similarity=0.093  Sum_probs=219.6

Q ss_pred             HHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhc----cccCchh-hHHHHHHHHHHHHHHH
Q 039943           36 AFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLAD----SCVGRYP-MIGFGCITYLLGVVLL  110 (581)
Q Consensus        36 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laD----r~~Grr~-~~~~~~~~~~~~~~~~  110 (581)
                      +..++.......+++.|+++.+|+++...+.+..+..+..++..|+.|+++|    | +|||| .++++.++.+++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHh
Confidence            3444555556678889999999999999999999999999999999999999    7 69765 5556778888887777


Q ss_pred             HHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHH
Q 039943          111 WLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVS  190 (581)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  190 (581)
                      ..... ..              .........+.+..++..++.........++.+|..++++      +|.+..+.-...
T Consensus        90 f~~~p-~~--------------~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~------~R~~l~~~~~~~  148 (428)
T PF13347_consen   90 FSPPP-AG--------------LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD------ERTRLSSWRMIF  148 (428)
T ss_pred             hcccc-ch--------------hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh------hhhhHHHHHHHH
Confidence            76520 00              0011134455677777789999999999999999988654      588888888888


Q ss_pred             HhhHHHHHHHHHHhhhccc-------cchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhcccc
Q 039943          191 VLASSMVAVTCIVYIQDNL-------GWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIK  263 (581)
Q Consensus       191 ~~~g~~~~p~~~~~i~~~~-------g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (581)
                      ..+|..+...+.+.+.+..       +|++...+.+++.++..++.....++.+++.+++++                  
T Consensus       149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~------------------  210 (428)
T PF13347_consen  149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK------------------  210 (428)
T ss_pred             HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc------------------
Confidence            8888866665555544322       578777777666665555544433330000000000                  


Q ss_pred             ccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHHH
Q 039943          264 LSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAV  343 (581)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (581)
                                                                     ..++++......++ |.....+.........+.
T Consensus       211 -----------------------------------------------~~~~~~~~~~~~~n-r~~~~l~~~~~~~~~~~~  242 (428)
T PF13347_consen  211 -----------------------------------------------KISLRDSLRSLFRN-RPFRILLLAFFLQWLAFA  242 (428)
T ss_pred             -----------------------------------------------ccccccchhhhccc-chHHHHHHHHHHHHhhhh
Confidence                                                           00000000000001 111111111111111111


Q ss_pred             hhcC-CChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHH
Q 039943          344 TISQ-SSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTAS  422 (581)
Q Consensus       344 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~  422 (581)
                      .... ..++.......+ ..       ...+.....+..++..|+.    .++.+|+++|       +.+..+.++.+++
T Consensus       243 ~~~~~~~y~~~~vl~~~-~~-------~~~~~~~~~~~~~v~~~~~----~~l~~r~gk~-------~~~~~~~~~~~~~  303 (428)
T PF13347_consen  243 LMNTFLPYYFTYVLGNE-GL-------ISIFMLIFFVASIVGSPLW----GRLSKRFGKK-------KVYIIGLLLAALG  303 (428)
T ss_pred             hhhhHHHHHHHHHhcCc-hh-------hHHHHHHHHHHHHHHHHHH----HHHHHHccce-------eehhhhHHHHHHH
Confidence            1111 111111111111 00       1112223344444444543    4477777666       4777777777777


Q ss_pred             HHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCC-------chhhHHHHHHH
Q 039943          423 MAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELP-------RSMSSIASALH  495 (581)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~  495 (581)
                      .++.....                    ..+.++..+..++.+++.+..++..++...|..+       ++..|...|++
T Consensus       304 ~~~~~~~~--------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~  363 (428)
T PF13347_consen  304 FLLLFFLG--------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVN  363 (428)
T ss_pred             HHHHHHHH--------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhh
Confidence            77665543                    1266777888899999999988888888888776       35579999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhh
Q 039943          496 GLGMSVASLVASFIMNAVDEITK  518 (581)
Q Consensus       496 ~~~~~ig~~i~~~i~~~i~~~~~  518 (581)
                      ++...++..+++.+.+.+.+..+
T Consensus       364 ~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  364 SFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999998887653

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=2.4e-15  Score=150.04  Aligned_cols=148  Identities=17%  Similarity=0.106  Sum_probs=135.8

Q ss_pred             hcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCccccccccccccc
Q 039943           56 EYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESAT  135 (581)
Q Consensus        56 ~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (581)
                      .++-++++.|++...+.+.+.+..++.|.+.|| +|+|-.+++|++++...++++++.+                     
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~---------------------  157 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN---------------------  157 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence            466788999999999999999999999999999 7999999999999999999999998                     


Q ss_pred             chhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhh
Q 039943          136 WSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGF  215 (581)
Q Consensus       136 ~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f  215 (581)
                        +++.++++|.++|+|.+....+..++++|.||++.      +|++++|..-.+..+|-.+||+.+|.+.+..|++.+|
T Consensus       158 --sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~------er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPF  229 (464)
T KOG3764|consen  158 --SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN------ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPF  229 (464)
T ss_pred             --hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch------hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcH
Confidence              78899999999999999999999999999999854      5999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcC
Q 039943          216 GVPAVISLLSALSFFLAS  233 (581)
Q Consensus       216 ~~~~~~~~i~~~~~~~~~  233 (581)
                      ++.+++.++...+-++..
T Consensus       230 lVL~~v~Lld~~L~l~vi  247 (464)
T KOG3764|consen  230 LVLAIVLLLDGALQLLVI  247 (464)
T ss_pred             HHHHHHHHHHHHHHHhee
Confidence            999888777665544433

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.66  E-value=4.5e-14  Score=139.22  Aligned_cols=154  Identities=13%  Similarity=0.042  Sum_probs=124.1

Q ss_pred             hhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcc
Q 039943           45 LMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPAC  124 (581)
Q Consensus        45 ~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (581)
                      ....+.+-+....|.+..|..+++.....++.+++...|.++|+ +|||+.+........+..++-+.++          
T Consensus        96 ~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~sp----------  164 (528)
T KOG0253|consen   96 LLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGASP----------  164 (528)
T ss_pred             HHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCCC----------
Confidence            34445556667788999999999999999999999999999999 7999999988888888777777777          


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHh
Q 039943          125 DQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVY  204 (581)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  204 (581)
                                   ++..++..|.+.|+|.|+ .|...++-.|..|...       |....-.. ....+|.++...+.-.
T Consensus       165 -------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~-------r~~~~V~~-~~waig~v~ea~law~  222 (528)
T KOG0253|consen  165 -------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH-------RWLLTVMS-FFWAIGQVFEALLAWG  222 (528)
T ss_pred             -------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC-------CCcchhHH-HHHHHHHHHHHHHHHH
Confidence                         788899999999999999 8999999999998844       55555544 5566888888877666


Q ss_pred             hhccccchhhhHHHHHHHHHHHHHHHh
Q 039943          205 IQDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       205 i~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      ...++||||......+...+.....++
T Consensus       223 vm~~~gwr~~l~~~~~pl~~~a~f~~w  249 (528)
T KOG0253|consen  223 VMSNFGWRYLLFTSSTPLMFAARFLVW  249 (528)
T ss_pred             HHHhhhHHHHHHHHHhHHHHHHHHHhh
Confidence            777889999887777655555444444

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.65  E-value=3.1e-14  Score=147.17  Aligned_cols=389  Identities=10%  Similarity=0.031  Sum_probs=219.0

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      +..+......++..+++-...++.+.|++++.|++.+|.|.+.++..+...+.+|+.|.++|| +|.||-++..+....+
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~   85 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLL   85 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHH
Confidence            345555565666666655677999999998899999999999999999999999999999999 7977765544333221


Q ss_pred             --HHHHH-HHhhhcccCCCCcccccccccccccchhH-HHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhh
Q 039943          106 --GVVLL-WLTTILSQAQPPACDQLRSDCESATWSQL-MLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQ  181 (581)
Q Consensus       106 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~  181 (581)
                        +-... .+.+-+.                   .+. ...+++-+..++...+..|...+++.+..         ++.+
T Consensus        86 l~~pff~~v~~pll~-------------------~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s---------r~~~  137 (412)
T PF01306_consen   86 LFGPFFIYVFGPLLQ-------------------SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS---------RRNG  137 (412)
T ss_dssp             TCHHHHHHTHHHHHH-------------------TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH---------HHHS
T ss_pred             HHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH---------HHhc
Confidence              22222 1222000                   011 11222222334444455566666544432         2344


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhcc
Q 039943          182 SYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRH  261 (581)
Q Consensus       182 ~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (581)
                      -=+|-..+...+|.+++..++|++.+ .+-+..|++.....++..++..+.++..+++.+..+..               
T Consensus       138 feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~---------------  201 (412)
T PF01306_consen  138 FEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL---------------  201 (412)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS---------------
T ss_pred             CCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc---------------
Confidence            44666677888999999999999876 45566778766554444443333322111110000000               


Q ss_pred             ccccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHH
Q 039943          262 IKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMI  341 (581)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (581)
                        ..                   .                         +.+.+.-........++....+.+.......
T Consensus       202 --~~-------------------~-------------------------~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~  235 (412)
T PF01306_consen  202 --GA-------------------K-------------------------KDKVSLKDVLSLFKMRNFWFFVLFVIGVAAI  235 (412)
T ss_dssp             --SS--------------------------------------------------HHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             --cc-------------------C-------------------------CCCCcHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence              00                   0                         0000000000111123333333333333333


Q ss_pred             HHhhcC--CChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHH
Q 039943          342 AVTISQ--SSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFS  419 (581)
Q Consensus       342 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~  419 (581)
                      +..+.|  +.++..   ..+..     ......++..+.+.++.=.+++ .+..++.+|.       +++..+.++..++
T Consensus       236 Y~vfdqqf~~y~~~---~f~~~-----~~g~~~~G~l~s~~v~~E~~~m-~~~p~li~ri-------g~k~~Lllag~i~  299 (412)
T PF01306_consen  236 YDVFDQQFPIYFAS---FFQSA-----GQGNQMYGYLWSVQVFLEALMM-FFSPWLINRI-------GAKNLLLLAGVIM  299 (412)
T ss_dssp             HHHHHHHHHHHHHH---TSSSH-----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---Hhccc-----ccChhHHhHHHHHHHHHHHHHH-HHHHHHHHhc-------ChHhHHHHHHHHH
Confidence            333433  222211   11110     0112223333333222222221 1233366664       4446777777777


Q ss_pred             HHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHH-HHH
Q 039943          420 TASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALH-GLG  498 (581)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~  498 (581)
                      ++=....+..                      .+.+++.+.-.++++-..+......-|+.+.+|++..++...+. ++.
T Consensus       300 ~iRi~~~~~~----------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~  357 (412)
T PF01306_consen  300 AIRIIGSGFA----------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFA  357 (412)
T ss_dssp             HHHHHHHHT------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTT
T ss_pred             HHHHHHHhhh----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHH
Confidence            7776666553                      36677888889999988888899999999999999999999885 788


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 039943          499 MSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKA  559 (581)
Q Consensus       499 ~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~  559 (581)
                      .+++.++.+.+.|.+.|..|                ++..|++++.+.+...++..+..++
T Consensus       358 ~~~~~~i~s~~~G~lyd~~G----------------~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  358 KQIGIIILSPLAGYLYDRIG----------------FQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHhhhHHhhHhhcC----------------cHHHHHHHHHHHHHHHHHheeeecC
Confidence            99999999999999998653                5678888888888777776666554

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11462 putative transporter; Provisional

Probab=99.65  E-value=2.2e-13  Score=146.56  Aligned_cols=173  Identities=18%  Similarity=0.231  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc---cCchh-hHHHHHHHHHHHHH
Q 039943           33 ANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSC---VGRYP-MIGFGCITYLLGVV  108 (581)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~---~Grr~-~~~~~~~~~~~~~~  108 (581)
                      +..+..++.+..+..++..|+++.+|+++..+|.+..+.-+.-++.-|+.|+++||.   +|||| -++++.+..+++.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            444455666666677899999999999999999999999999999999999999972   68864 45566677777776


Q ss_pred             HHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHH
Q 039943          109 LLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYY  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (581)
                      ++...+.+.                 .......+++.-++..++.........++.+|..++.      ++|.+..++..
T Consensus        96 llf~~p~~s-----------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~------~eRt~l~s~r~  152 (460)
T PRK11462         96 LAYSTPDLS-----------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDP------TQRISLQSWRF  152 (460)
T ss_pred             HHHhCCCCC-----------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCH------HHHHHHHHHHH
Confidence            665544111                 1112445556666677888888888889999988764      56999999999


Q ss_pred             HHHhhHHHHHHHHHHhhhcc-------ccchhhhHHHHHHHHHHHHH
Q 039943          189 VSVLASSMVAVTCIVYIQDN-------LGWKVGFGVPAVISLLSALS  228 (581)
Q Consensus       189 ~~~~~g~~~~p~~~~~i~~~-------~g~~~~f~~~~~~~~i~~~~  228 (581)
                      .+.++|..+++.+...+...       .+|+....+.+++.++...+
T Consensus       153 ~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i  199 (460)
T PRK11462        153 VLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF  199 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            88888888887665444332       24665555555444444333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.63  E-value=4.4e-13  Score=133.05  Aligned_cols=350  Identities=14%  Similarity=0.171  Sum_probs=226.6

Q ss_pred             HHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCccccc
Q 039943           48 NMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQL  127 (581)
Q Consensus        48 ~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (581)
                      .+..-+++++|+|.+.+|+++++-.+...+..++..+++.| +|.++.+..++++..+|.++=...              
T Consensus        33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~--------------   97 (395)
T COG2807          33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG--------------   97 (395)
T ss_pred             hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc--------------
Confidence            34456788999999999999999999999999999999999 799999999999988888775554              


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhc
Q 039943          128 RSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQD  207 (581)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~  207 (581)
                                +...++.+-.+.|.|.+......+.++-+.||+        +-+..+++|....++|+++++.+...+.+
T Consensus        98 ----------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk--------~~~~mtglYs~sl~~~aaLaa~lavpla~  159 (395)
T COG2807          98 ----------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK--------RVGLMTGLYSTSLGAGAALAAALAVPLAQ  159 (395)
T ss_pred             ----------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc--------chhhHHhHHHHHHHHHHHHHhhhhhHHHH
Confidence                      356688888999999999999999999999996        57889999999999999999999988888


Q ss_pred             cc-cchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhccccccCccccccccCCCCCccccCCc
Q 039943          208 NL-GWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSE  286 (581)
Q Consensus       208 ~~-g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (581)
                      +. ||+....+=+...++++++++.-..+.+....+...                  .+                     
T Consensus       160 ~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~------------------~~---------------------  200 (395)
T COG2807         160 HSGGWRGALGFWALLALLALLIWLPQALREQAASIATKL------------------VS---------------------  200 (395)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHhhhccccccccccccc------------------cc---------------------
Confidence            77 799998887777777777665532211100000000                  00                     


Q ss_pred             chhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHHHhhcC-CChhheecccCCCCCCCC
Q 039943          287 NLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFPVLQASTMDRHITPN  365 (581)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  365 (581)
                                             ...-|+        +.......+.+-+....+++.+.+ +..+..+  ..+..    
T Consensus       201 -----------------------~~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~--G~sa~----  243 (395)
T COG2807         201 -----------------------VRKVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR--GLSAA----  243 (395)
T ss_pred             -----------------------cccccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc--CCCHH----
Confidence                                   001111        011111122222333444444444 3333222  11111    


Q ss_pred             cccCcccccchhhHHHHHHhhhccchhhh-HhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC
Q 039943          366 FEIPSGSFGIFTIITVILWIGFYDRILQP-IASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISD  444 (581)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  444 (581)
                            ..+..-.+..+.-.|.  .+..| +++|..++      +.........+.++++.+.+.+.             
T Consensus       244 ------~aG~llsl~~l~~~~~--~ll~P~la~R~~n~------r~~~~~~~~~~l~G~~G~~~~P~-------------  296 (395)
T COG2807         244 ------EAGSLLSLMQLAQLPT--ALLIPLLARRSKNQ------RPLVVLALLLMLVGLVGLLLAPG-------------  296 (395)
T ss_pred             ------HhhhHHHHHHHHHHHH--HHHHHHHHHHhccc------chHHHHHHHHHHHHHHHHHHhhh-------------
Confidence                  1111111111111111  11222 45553333      23444445555555555444331             


Q ss_pred             CCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCC-chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Q 039943          445 DPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELP-RSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKE  523 (581)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~  523 (581)
                            ...++|    .+++|+|.+..+|....+...... ++..+..+|+.+.+..+=..+||.++|.+.|.++     
T Consensus       297 ------~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g-----  361 (395)
T COG2807         297 ------QLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG-----  361 (395)
T ss_pred             ------hHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC-----
Confidence                  223334    477888888888888888777665 5667778888888899999999999999999776     


Q ss_pred             CCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhc
Q 039943          524 GWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCK  558 (581)
Q Consensus       524 ~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~  558 (581)
                      +|          ...+..++.+.++..++-+...|
T Consensus       362 sw----------~~~~~~l~~~~i~m~i~Gl~a~r  386 (395)
T COG2807         362 SW----------SAPLVLLALATLLMLIFGLRAGR  386 (395)
T ss_pred             Ch----------HHHHHHHHHHHHHHHHHHhhcch
Confidence            56          55566666666665555444433

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.61  E-value=2.3e-13  Score=145.24  Aligned_cols=151  Identities=14%  Similarity=0.049  Sum_probs=128.8

Q ss_pred             hhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Q 039943           54 CGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCES  133 (581)
Q Consensus        54 ~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (581)
                      .++.++..++.+.+.++|.++++++.+++|.+.|| +.-.+.+....+.+.+-.++.....                   
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~~-------------------  132 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAVH-------------------  132 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            46788999999999999999999999999999999 6977777777666666665555566                   


Q ss_pred             ccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhh------c
Q 039943          134 ATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQ------D  207 (581)
Q Consensus       134 ~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~------~  207 (581)
                          +++.+++.|++.|+.+++.+|....+++.+|.+       ++|+..+++++....+|+++|.++...+.      .
T Consensus       133 ----s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~-------~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~  201 (495)
T KOG2533|consen  133 ----SFPGLIALRFLLGLFESGGWPGVVAILGNWYGK-------SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG  201 (495)
T ss_pred             ----hhHHHHHHHHHHHHHhcccchHHHHHHHhhcCh-------hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence                788899999999999999999999999999998       67999999999999999999998877753      3


Q ss_pred             cccchhhhHHHHHHHHHHHHHHHhcCCc
Q 039943          208 NLGWKVGFGVPAVISLLSALSFFLASPF  235 (581)
Q Consensus       208 ~~g~~~~f~~~~~~~~i~~~~~~~~~~~  235 (581)
                      ..||||.|++.+++.++..++.++..|.
T Consensus       202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  202 LAGWRWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             cCCceeehhHHHHHHHHHHheEEEEecC
Confidence            4689999999998877766665555443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.60  E-value=1.4e-12  Score=136.31  Aligned_cols=362  Identities=14%  Similarity=0.134  Sum_probs=224.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc---cCc-hhhHHHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSC---VGR-YPMIGFGCITYL  104 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~---~Gr-r~~~~~~~~~~~  104 (581)
                      ..-.+..+..++.+-.+..++..|.++.+|+++..+|.+..+.-+.=++.-|+.|.+.||.   +|| |+-++++.+.++
T Consensus        15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~   94 (467)
T COG2211          15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFA   94 (467)
T ss_pred             HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHH
Confidence            3344556666677777889999999999999999999999999999999999999999973   466 466777778888


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      +..+++..++++..                 +.+....++.-.+.+++.....-...++.+|+.+++      ++|.+..
T Consensus        95 i~~~l~F~~p~~~~-----------------~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~------~ER~~l~  151 (467)
T COG2211          95 IVAVLLFITPDFSM-----------------TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDP------QERASLT  151 (467)
T ss_pred             HHHHHHHcCCCccc-----------------CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCH------HHHHHHH
Confidence            88888888763221                 235666777788888998888888899999987764      5699999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhhc-------cccchhhhHHHHHHHHHHHHHHHhcCCc-ccccCCCCChhhhHHHHHHHH
Q 039943          185 SWYYVSVLASSMVAVTCIVYIQD-------NLGWKVGFGVPAVISLLSALSFFLASPF-YVQSKANTSLLTGLIQVLVAS  256 (581)
Q Consensus       185 ~~~~~~~~~g~~~~p~~~~~i~~-------~~g~~~~f~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  256 (581)
                      ++-....++|..+...+.+.+..       ..||+..-.+.+++..+.++.++...++ ..+..+.++..          
T Consensus       152 s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~----------  221 (467)
T COG2211         152 SWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGV----------  221 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccc----------
Confidence            99988888887776665554432       2356666555555555554444432221 11111110000          


Q ss_pred             HhhccccccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHH
Q 039943          257 YKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWS  336 (581)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (581)
                                                    ++.+.+.-                         ......|.++..+.   
T Consensus       222 ------------------------------~~~~~~~~-------------------------~~~~~Nrp~~~~l~---  243 (467)
T COG2211         222 ------------------------------KLKLKDSF-------------------------LLIFKNRPLLLLLL---  243 (467)
T ss_pred             ------------------------------cccHHHHH-------------------------HHHHccchHHHHHH---
Confidence                                          00000000                         00001111111111   


Q ss_pred             hhHHHHHhhcC-CChhheecc-cCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHH
Q 039943          337 TGIMIAVTISQ-SSFPVLQAS-TMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGI  414 (581)
Q Consensus       337 ~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~  414 (581)
                      .....+...+. .+...+... .+.+.-     ..+...........++..++    ..++.+|+|+|       +...+
T Consensus       244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~-----l~~~~~~~~~~~~~l~~~~~----~p~L~~~~gkk-------~~~~~  307 (467)
T COG2211         244 MNLLLFIAFNIRGSIMVYYVTYVLGDPE-----LFAYLLLLASGAGLLIGLIL----WPRLVKKFGKK-------KLFLI  307 (467)
T ss_pred             HHHHHHHHHHHHhhhhheeEEEEcCChH-----HHHHHHHHHHHHHHHHHHHh----HHHHHHHhchH-------HHHHH
Confidence            22223333333 222222211 111110     10101111111111111222    33466666555       67888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccC-------Cchh
Q 039943          415 GLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSEL-------PRSM  487 (581)
Q Consensus       415 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------P~~~  487 (581)
                      +.++.+++.+...+..                    ..+.+..++..++.++|.+...+..++.+.+..       -++.
T Consensus       308 ~~~~~~i~~~~~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~  367 (467)
T COG2211         308 GLLLLAVGYLLLYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRR  367 (467)
T ss_pred             HHHHHHHHHHHHHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCc
Confidence            8888877777666542                    224556666678888888888888888877653       3467


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 039943          488 SSIASALHGLGMSVASLVASFIMNAVDEIT  517 (581)
Q Consensus       488 rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~  517 (581)
                      .|...|.+++++-+|..++..+.+++.+..
T Consensus       368 eGi~~s~~tF~~K~g~ala~~~~g~~L~~~  397 (467)
T COG2211         368 EGIVYSGMTFFRKLGLALAGFIPGWILGAI  397 (467)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            788899999999999999999999998765

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.53  E-value=5.8e-13  Score=140.64  Aligned_cols=176  Identities=9%  Similarity=0.063  Sum_probs=133.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH
Q 039943           23 GGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCIT  102 (581)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (581)
                      +++|..+..+...+.....++....++|.|+++++|++..+.+++.+...++..++.++.|+++|| +|||+.+..+.+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~  291 (393)
T PRK15011        213 RNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVA  291 (393)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHH
Confidence            344444444444444444555566789999999999999999999888888888899999999999 7999988877665


Q ss_pred             HHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhH
Q 039943          103 YLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS  182 (581)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (581)
                      ..+.........                       +.+.+++.+++.+++.|...+...++..|.+|+        +|++
T Consensus       292 ~~~~~~~~~~~~-----------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~--------~~g~  340 (393)
T PRK15011        292 GVCFYAGMLMAH-----------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG--------QAGS  340 (393)
T ss_pred             HHHHHHHHHHHh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------Ccch
Confidence            555444443333                       455566777777777777667777788888875        3888


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 039943          183 YFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       183 ~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      +.++++...++|..++|.++|++.+.+||+..|++.+++.+++++..+
T Consensus       341 ~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK15011        341 ATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL  388 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            999988888999999999999999989999999888777776665544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.49  E-value=1.1e-12  Score=142.58  Aligned_cols=178  Identities=12%  Similarity=0.124  Sum_probs=131.6

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      ++.+.......++..+.+|++..++|.|+++.+|++..+.+++.....++..++.++.|+++|| +|||+++..+.++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~  327 (490)
T PRK10642        249 WRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVALF  327 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence            3333333344455677888999999999988899999888888888889999999999999999 799999988876544


Q ss_pred             HHHHH-HHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          105 LGVVL-LWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       105 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                      ++.+. .....                     ..+...+++++++.|++.+...+....++.|.+|+       +.|+++
T Consensus       328 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~-------~~Rg~~  379 (490)
T PRK10642        328 VLAIPAFILIN---------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPT-------HIRYSA  379 (490)
T ss_pred             HHHHHHHHHHh---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------ccchHH
Confidence            43332 22222                     11456677888888888777777788889999998       669999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhhccc-cchhhhHHHHHHHHHHHHHHHh
Q 039943          184 FSWYYVSVLASSMVAVTCIVYIQDNL-GWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       184 ~~~~~~~~~~g~~~~p~~~~~i~~~~-g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      ++..+....+++.++|.+.+++.+.. +|+.++++..+..+++++..++
T Consensus       380 ~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~  428 (490)
T PRK10642        380 LAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT  428 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            99866666777888999999987754 4676666555555555444443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.48  E-value=9.7e-13  Score=142.18  Aligned_cols=176  Identities=11%  Similarity=0.024  Sum_probs=133.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~  106 (581)
                      .++.+.+..++....++++..++|.|+++++|++..++++..+...++..++.+++|+++|| +|||+.+.....+..++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~~  337 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALII  337 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHH
Confidence            45666677777777778888999999999999999999999999999999999999999999 69998877655444443


Q ss_pred             HHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHH
Q 039943          107 VVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSW  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (581)
                      ..+..+..                     ..+....++.+++.|+...+..........|.+|+       +.|+++.++
T Consensus       338 ~~~~~~~~---------------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~-------~~~g~a~gi  389 (467)
T PRK09556        338 FTLGVYQH---------------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK-------KAIGVANGI  389 (467)
T ss_pred             HHHHHHHh---------------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch-------hhHHHHHHH
Confidence            32222221                     01344555667777755433333334566799988       679999999


Q ss_pred             HHHHHhh-HHHHHHHHHHhhhc------------cccchhhhHHHHHHHHHHHHHHHh
Q 039943          187 YYVSVLA-SSMVAVTCIVYIQD------------NLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       187 ~~~~~~~-g~~~~p~~~~~i~~------------~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      .+...++ |..++|.+.|++.+            ..||+..|++.+++.+++.+..+.
T Consensus       390 ~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        390 KGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             HHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence            9988886 77999999999999            578999998887777766555443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.48  E-value=1.8e-10  Score=123.45  Aligned_cols=90  Identities=14%  Similarity=0.128  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCch
Q 039943          455 MWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGR  534 (581)
Q Consensus       455 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~  534 (581)
                      +...+.-++.|+..+...+..-++..+..|+...+...|++.+......++||.+.+.+.+.++               +
T Consensus       381 ~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg---------------~  445 (477)
T PF11700_consen  381 WEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG---------------S  445 (477)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------C
Confidence            3344455678888899999999999999999999999999999999999999999999998764               2


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhcc
Q 039943          535 YDYYYWLLAGLNMASFIYFLACCKA  559 (581)
Q Consensus       535 ~~~~f~~~a~~~~~~~~~~~~~~~~  559 (581)
                      .+..+..+.++.++++++++.+..+
T Consensus       446 ~r~g~~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  446 QRYGFLFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             chhHHHHHHHHHHHHHHHHhhccch
Confidence            3556778888888888887555443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK03699 putative transporter; Provisional

Probab=99.45  E-value=2.6e-12  Score=135.63  Aligned_cols=172  Identities=12%  Similarity=0.066  Sum_probs=135.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~  106 (581)
                      .++.+.+..++.....+++..++|.|+++++|++..+++++.+.+.++..++.++.|+++|| +|||+++.....+..+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~~  284 (394)
T PRK03699        206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALVL  284 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHH
Confidence            34555555566666777888999999998999999999999999999999999999999999 79999998877666665


Q ss_pred             HHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHH
Q 039943          107 VVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSW  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (581)
                      ..+....+                       +...+....++.|++.+...+...++..|..|.        .+++..+.
T Consensus       285 ~~~~~~~~-----------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~--------~~~~~~g~  333 (394)
T PRK03699        285 MYLFVNTD-----------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV--------ASPKLVNF  333 (394)
T ss_pred             HHHHHHcC-----------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--------CCHHHHHH
Confidence            55544443                       344455566778888887888888887877654        24556777


Q ss_pred             HHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 039943          187 YYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       187 ~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      .....++|..++|.+.|++.+..|++..+++.+++.+++.+...
T Consensus       334 ~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  377 (394)
T PRK03699        334 ILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI  377 (394)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence            78888999999999999999999999999887776666654433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.45  E-value=2.8e-12  Score=135.51  Aligned_cols=166  Identities=14%  Similarity=0.114  Sum_probs=134.2

Q ss_pred             HHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhh
Q 039943           36 AFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTI  115 (581)
Q Consensus        36 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~  115 (581)
                      .+..++++.+..+++.|+. +.|+  .+.++..+.+.++..++.++.|++.|| +||||.+..+.++..++..+..+.. 
T Consensus       226 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~-  300 (399)
T PRK05122        226 ALASIGFGTIATFITLYYA-ARGW--DGAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLAP-  300 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHH-Hccc--ccchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhc-
Confidence            3445556666778888876 4465  345667788888999999999999999 7999999988888888877776655 


Q ss_pred             cccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHH
Q 039943          116 LSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASS  195 (581)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  195 (581)
                                            +.+.++..+++.|++.+...+.......|.+|+       ++|++++++++...++|.
T Consensus       301 ----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~  351 (399)
T PRK05122        301 ----------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPP-------QNRGAALGAYSVFLDLSL  351 (399)
T ss_pred             ----------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHH
Confidence                                  556677788999999998888888888888887       679999999999999999


Q ss_pred             HHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 039943          196 MVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPF  235 (581)
Q Consensus       196 ~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~  235 (581)
                      .++|.+.|++.+..||++.|++.+++.+++++......++
T Consensus       352 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        352 GITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999998999999999888777776655544443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.43  E-value=6.4e-12  Score=131.31  Aligned_cols=164  Identities=9%  Similarity=0.039  Sum_probs=130.6

Q ss_pred             HHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhh
Q 039943           35 EAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTT  114 (581)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~  114 (581)
                      .++..........++|.|+.+++|.+..+.+++.+...+...++.++.|+++|| +|||+++..+.++..+........+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~  286 (375)
T TIGR00899       208 CTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAADN  286 (375)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHH
Confidence            333333344455678889988999999999998888887888889999999999 7999999887766555554444444


Q ss_pred             hcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhH
Q 039943          115 ILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLAS  194 (581)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  194 (581)
                                             +.+.++..+++.|++.+...+...++..|..|+        +++++.++++...++|
T Consensus       287 -----------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g  335 (375)
T TIGR00899       287 -----------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG--------RAGAATTLYTNTGRVG  335 (375)
T ss_pred             -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--------hhhHHHHHHHHHHHHH
Confidence                                   556677778888988888888888888888765        3568999999999999


Q ss_pred             HHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 039943          195 SMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       195 ~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      ..++|.+.|++.+..||+..|++.++..+++.+...
T Consensus       336 ~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       336 WIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            999999999999989999999988887776665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09952 shikimate transporter; Provisional

Probab=99.43  E-value=4.9e-12  Score=135.52  Aligned_cols=181  Identities=14%  Similarity=0.045  Sum_probs=132.0

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      ++.........++..+.+|....+++.|+++.+|++......+..+..+...++.++.|+++|| +||||++..+.++.+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~~  327 (438)
T PRK09952        249 PGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIGT  327 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHH
Confidence            3333333445666777888899999999999999998876666667777788899999999999 799999998877665


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      ++.+.+......                   ..+...++...++.+++.+...+..+++++|.+|.       +.|+++.
T Consensus       328 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~-------~~r~tg~  381 (438)
T PRK09952        328 LSAFPFFMALEA-------------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA-------SYRYSGA  381 (438)
T ss_pred             HHHHHHHHHHHc-------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc-------chhHHHH
Confidence            544333332100                   01234444556667888888888889999999998       5698888


Q ss_pred             HHHHHH-HhhHHHHHHHHHHhhhccc--cchhhhHHHHHHHHHHHHHHHhc
Q 039943          185 SWYYVS-VLASSMVAVTCIVYIQDNL--GWKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       185 ~~~~~~-~~~g~~~~p~~~~~i~~~~--g~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                      ++.+.. ..+|+.++|.+.+++.+..  +|...+.+.+++.+++.+..+..
T Consensus       382 g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        382 GVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            886654 4589999999999998743  48888777777666666554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.43  E-value=2.8e-12  Score=133.58  Aligned_cols=169  Identities=11%  Similarity=0.086  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      .+.+....++..+.......+.++|. +++|.+..+.+++.+.+.++..++.++.|+++|| +|||+.+.++.++..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~  284 (377)
T TIGR00890       207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGM  284 (377)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHH
Confidence            34444444444455444556666665 5689999999999999999999999999999999 799999999988888887


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      ++..+.++                     .+...++...++.|++.+...+..++++.|.+|+       ++|++..++.
T Consensus       285 ~~~~~~~~---------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-------~~~~~~~g~~  336 (377)
T TIGR00890       285 AAMLFIPM---------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGP-------ANSAANYGFL  336 (377)
T ss_pred             HHHHHccc---------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhh-------hhhhhHhHHH
Confidence            77666541                     1223345566778888888888888999999988       6699999999


Q ss_pred             HHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHH
Q 039943          188 YVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSA  226 (581)
Q Consensus       188 ~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~  226 (581)
                      +...++|..++|.+.|++.++.||++.|.+.+++.++++
T Consensus       337 ~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       337 YTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            999999999999999999999999999988877665543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.42  E-value=5.1e-10  Score=114.19  Aligned_cols=376  Identities=14%  Similarity=0.105  Sum_probs=217.5

Q ss_pred             hhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccC-----ch-hhHHHHHHHHHHHHHHHHHhhhcccCCCCccccc
Q 039943           54 CGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVG-----RY-PMIGFGCITYLLGVVLLWLTTILSQAQPPACDQL  127 (581)
Q Consensus        54 ~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~G-----rr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (581)
                      ..|++++..-.+.+.+.-.+... ..+..|+.+|+ .+     || +-+..|..+...+..+.+++.....       +.
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~-~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~-------~~   77 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDT-HPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA-------ES   77 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHH-HHHHhcccccc-CcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc-------cc
Confidence            45788888888888877776655 57889999999 47     66 4555566677777777766653222       00


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhc
Q 039943          128 RSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQD  207 (581)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~  207 (581)
                      .-+...+.........+...+.|+|.+....+..++++|..|+       ++|+++.++.+...-+|.+++.++.+.+.+
T Consensus        78 ~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e-------~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~  150 (403)
T PF03209_consen   78 GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE-------ERRPRVVAIVWVMLIVGIIVSAIVFGRLLD  150 (403)
T ss_pred             ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            0001111222334566667888999999999999999999998       679999999999999999999999998888


Q ss_pred             cccchhhhHHHHH----HHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhccccccCccccccccCCCCCcccc
Q 039943          208 NLGWKVGFGVPAV----ISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLV  283 (581)
Q Consensus       208 ~~g~~~~f~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (581)
                      .++..-..-+.-.    ..++.++..+-..++.++..+..+                                       
T Consensus       151 ~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~---------------------------------------  191 (403)
T PF03209_consen  151 PFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAE---------------------------------------  191 (403)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCC---------------------------------------
Confidence            7663333222222    222222221111111111110000                                       


Q ss_pred             CCcchhhhhhh-hhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHHHhhcC-CChhheecccCCCC
Q 039943          284 PSENLRCLNKA-CIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFPVLQASTMDRH  361 (581)
Q Consensus       284 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  361 (581)
                       .++..+.+.- +...+                       .+.++++..+  ++...   ..+.| .-+-.|-..    .
T Consensus       192 -~~~~~f~~a~~~~~~~-----------------------~~a~~f~~fl--~l~t~---a~~~QD~iLEPygg~----V  238 (403)
T PF03209_consen  192 -RPRPPFREAWRQVWAS-----------------------PQARRFFVFL--FLGTL---AFFMQDVILEPYGGE----V  238 (403)
T ss_pred             -CCCccHHHHHHHHHhC-----------------------CChhHHHHHH--HHHHH---HHHhhHHHcCCchhH----H
Confidence             0000000000 00000                       0122222211  11111   11223 111111111    1


Q ss_pred             CCCCcccCc---ccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 039943          362 ITPNFEIPS---GSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAI  438 (581)
Q Consensus       362 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  438 (581)
                      +    .++.   ..+........++...+..+    ...|   |   .++.+...+|..+.++++........       
T Consensus       239 f----gmsv~eTT~Lta~~~~G~L~G~~~~g~----~l~~---~---~~~~~~a~~G~~~~~~~f~lii~a~~-------  297 (403)
T PF03209_consen  239 F----GMSVGETTRLTAFWGGGTLLGMLLAGF----LLSR---R---LGKKRTAALGCLLGALAFALIILAGP-------  297 (403)
T ss_pred             c----CCCHHHHHHHHHHHHHHHHHHHHHHHH----HhcC---C---CCchHHHHHHHHHHHHHHHHHHHHHh-------
Confidence            1    1222   22333344444444443332    2222   2   34445566676666666655444321       


Q ss_pred             ccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 039943          439 NEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITK  518 (581)
Q Consensus       439 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~  518 (581)
                                  .-+.+.+-...+++|++.++......+..++.++++..|..+|.+...+.++..++..+.+.+.|...
T Consensus       298 ------------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~  365 (403)
T PF03209_consen  298 ------------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR  365 (403)
T ss_pred             ------------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        12456667788999999999999999999999999999999999999999999999999999998764


Q ss_pred             cCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 039943          519 RGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLAC  556 (581)
Q Consensus       519 ~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~  556 (581)
                            ++.++.....|..+|.+=+++.++++.+..-+
T Consensus       366 ------~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~l  397 (403)
T PF03209_consen  366 ------ALFGNSPALAYGVVFALEAVLLLAALVLLGRL  397 (403)
T ss_pred             ------HhccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  22221133456777776666666666554433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.42  E-value=2.4e-12  Score=130.47  Aligned_cols=179  Identities=18%  Similarity=0.171  Sum_probs=147.1

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc-Cchhh-HHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCV-GRYPM-IGFGCITY  103 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~-Grr~~-~~~~~~~~  103 (581)
                      |.+|.+.++.++-.+.-|++..|.|.|+.+..|+|..++++..+.|-.++..++++.||++||.+ |||.. -++++++.
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            45688889999999999999999999999999999999999999999999999999999999988 77643 44444455


Q ss_pred             HHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          104 LLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                      .++.+...+++                     ..+..+..+..+.+|+-.-+.+-..-....|..|+       +.-|++
T Consensus       332 ~~~~~~~w~~~---------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK-------~AaGtA  383 (448)
T COG2271         332 TASLVLYWLAP---------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK-------KAAGTA  383 (448)
T ss_pred             HHHHHHHHcCC---------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH-------hhccch
Confidence            55666666655                     22567777888888887777667777778898888       668999


Q ss_pred             HHHHHHHHhh-HHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhc
Q 039943          184 FSWYYVSVLA-SSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       184 ~~~~~~~~~~-g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                      .|+...+..+ |...+-...|++.|.+||...|++..+..+++.+.+...
T Consensus       384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence            9999888887 999999999999999999999998877776666555443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.41  E-value=5.6e-12  Score=141.20  Aligned_cols=135  Identities=13%  Similarity=0.024  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHH
Q 039943           66 NVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSA  145 (581)
Q Consensus        66 ~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (581)
                      +...+..++..++.+++|+++|| +|||++++++.++.+++.+++++..                       +...+++.
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~-----------------------s~~~ll~~  654 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN-----------------------SESAMIAL  654 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc-----------------------cHHHHHHH
Confidence            33556668889999999999999 7999999999999999888888776                       44556677


Q ss_pred             HHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHH
Q 039943          146 LGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLS  225 (581)
Q Consensus       146 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~  225 (581)
                      +++.++..++..+...++++|++|+       +.|++++++.+...++|+++||.+++++.+. +...+|++.+++.+++
T Consensus       655 ~~l~g~~~~~~~~~~~a~~aEl~Pt-------~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~  726 (742)
T TIGR01299       655 LCLFGGLSIAAWNALDVLTVELYPS-------DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACG  726 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence            7888888888889999999999999       7899999999999999999999999988764 4566777777776666


Q ss_pred             HHHHHhc
Q 039943          226 ALSFFLA  232 (581)
Q Consensus       226 ~~~~~~~  232 (581)
                      .++..+.
T Consensus       727 ~ll~~~L  733 (742)
T TIGR01299       727 GLLALKL  733 (742)
T ss_pred             HHHHHhC
Confidence            5554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.41  E-value=8.5e-12  Score=128.34  Aligned_cols=170  Identities=21%  Similarity=0.245  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchh-hHHHHHHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYP-MIGFGCITYLLGV  107 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~-~~~~~~~~~~~~~  107 (581)
                      +...+..++..........+.+.++.+.+|.+..+.+++.....++..++.++.|++.|| +|||+ .+..+.++..++.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~  256 (352)
T cd06174         178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAALGL  256 (352)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHH
Confidence            334444555666666777888888888789999999999999999999999999999999 79999 9999999999988


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      +......                       +.+.++...++.|++.+...+...+++.|..|+       ++|++.++..
T Consensus       257 ~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  306 (352)
T cd06174         257 LLLALAP-----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPP-------EARGTASGLF  306 (352)
T ss_pred             HHHHHhc-----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH-------HHHHHHHHHH
Confidence            8888776                       567788899999999999999999999999998       6799999999


Q ss_pred             HHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 039943          188 YVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSF  229 (581)
Q Consensus       188 ~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~  229 (581)
                      +...++|..++|.+.+++.+..+|+..|++.++..+++.+..
T Consensus       307 ~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         307 NTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            999999999999999999998999999999888777766554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.41  E-value=5.1e-12  Score=133.75  Aligned_cols=166  Identities=14%  Similarity=0.060  Sum_probs=131.1

Q ss_pred             HHHHHHHHhhhhhHHHHHhhhhcCCcch---hhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHH
Q 039943           35 EAFERMASMGLMPNMILYLCGEYNMETT---AGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLW  111 (581)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~---~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~  111 (581)
                      .++..+....+.++++.|+.+..+....   ..+.+.++..++..++.+..|+++|| +|||+++..+.++..++.+...
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~  306 (408)
T PRK09874        228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMS  306 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHH
Confidence            3344445455667778888764443222   24556667778888999999999999 7999999998887777776666


Q ss_pred             HhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHH
Q 039943          112 LTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSV  191 (581)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (581)
                      +..                       +.+.+++.+++.|++.+...|...+++.+..|+       +.|++.++.++...
T Consensus       307 ~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~  356 (408)
T PRK09874        307 FVQ-----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSN-------QIAGRIFSYNQSFR  356 (408)
T ss_pred             Hhc-----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCc-------ccceeeehHHHHHH
Confidence            555                       566777888999999999999999988887776       56899999999999


Q ss_pred             hhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh
Q 039943          192 LASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       192 ~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      ++|..+||.++|++.+..||++.|++.+++.+++.+....
T Consensus       357 ~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        357 DIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988887777665544

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.41  E-value=2e-11  Score=128.95  Aligned_cols=176  Identities=11%  Similarity=0.038  Sum_probs=135.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~  106 (581)
                      ..+.+.+..++....++++..++|.|+++ +|++..+++...+.+.++..++.++.|+++|| +|||+.+..+..+..++
T Consensus       206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~  283 (393)
T PRK09705        206 RAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVG  283 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHH
Confidence            34555555566677888899999999975 89999999999999999999999999999999 79999999888777776


Q ss_pred             HHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHH
Q 039943          107 VVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSW  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (581)
                      ..+....+.                      +...+  ...+.|++.+...|.......+.++++      +.|++.+++
T Consensus       284 ~~~~~~~~~----------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~------~~~g~~~g~  333 (393)
T PRK09705        284 FCGFIWLPL----------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQP------AIAGKLVAF  333 (393)
T ss_pred             HHHHHHccc----------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCH------HHHHHHHHH
Confidence            655443220                      11112  124568888888888777777777532      468999999


Q ss_pred             HHHHHhhHHHHHHHHHHhhhcccc-chhhhHHHHHHHHHHHHHHHhcCC
Q 039943          187 YYVSVLASSMVAVTCIVYIQDNLG-WKVGFGVPAVISLLSALSFFLASP  234 (581)
Q Consensus       187 ~~~~~~~g~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~  234 (581)
                      .+...+++..++|++.|++.|..| |...|++.++..++++.......+
T Consensus       334 ~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        334 MQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999875 788888877766666555444333

>PRK12382 putative transporter; Provisional

Probab=99.38  E-value=1.3e-11  Score=130.23  Aligned_cols=162  Identities=14%  Similarity=0.134  Sum_probs=132.5

Q ss_pred             HHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhh
Q 039943           36 AFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTI  115 (581)
Q Consensus        36 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~  115 (581)
                      ++....+..+..+.+.|+++ .+++  +.+.....+.++..++.++.|++.|| +||||.+..+..+..++.++..+.+ 
T Consensus       226 ~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~-  300 (392)
T PRK12382        226 ALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAP-  300 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcc-
Confidence            33445555666777888864 4654  35666777888888999999999999 7999999999888888877776655 


Q ss_pred             cccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHH
Q 039943          116 LSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASS  195 (581)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  195 (581)
                                            +...++...++.|++.+...+...+...|.+|+       ++|++..++++....+|.
T Consensus       301 ----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~  351 (392)
T PRK12382        301 ----------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPS-------QVRGTALGGYAAFQDIAY  351 (392)
T ss_pred             ----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHH
Confidence                                  556667788899999998888888888998887       679999999999999999


Q ss_pred             HHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh
Q 039943          196 MVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       196 ~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      .++|.+.|++.++.||+..|.+.+++.+++.+..+.
T Consensus       352 ~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        352 GVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999988877776665543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.38  E-value=1.4e-11  Score=131.20  Aligned_cols=175  Identities=9%  Similarity=0.013  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHhhhhcCCc--------chhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH
Q 039943           31 IIANEAFERMASMGLMPNMILYLCGEYNME--------TTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCIT  102 (581)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s--------~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (581)
                      .++..++..........+.+.|+. +.|.+        ..+.+.+.++..+...++.++.|+++|| +|||+++..+.++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~  290 (418)
T TIGR00889       213 FFFFSMLLGAPLQITNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVA  290 (418)
T ss_pred             HHHHHHHHHhHHHHHHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence            333344444433344466777875 34544        3667899999999999999999999999 7999999999998


Q ss_pred             HHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhH
Q 039943          103 YLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS  182 (581)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (581)
                      ..++..++.....                   +..+...+++.+++.|++.+...+....++.|.+|+       +.|++
T Consensus       291 ~~v~~~l~~~~~~-------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~-------~~~g~  344 (418)
T TIGR00889       291 WALRFGFFAYGDP-------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV-------HIRAS  344 (418)
T ss_pred             HHHHHHHHHHcCc-------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHH
Confidence            8887766666320                   011345677889999999999889999999999998       77999


Q ss_pred             HHHHHH-HHHhhHHHHHHHHHHhhhcc------ccchhhhHHHHHHHHHHHHHHHhcC
Q 039943          183 YFSWYY-VSVLASSMVAVTCIVYIQDN------LGWKVGFGVPAVISLLSALSFFLAS  233 (581)
Q Consensus       183 ~~~~~~-~~~~~g~~~~p~~~~~i~~~------~g~~~~f~~~~~~~~i~~~~~~~~~  233 (581)
                      ++++.+ ....+|..+||+++|++.++      +||+.+|.+.+++.+++.+.+....
T Consensus       345 ~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~  402 (418)
T TIGR00889       345 AQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFF  402 (418)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            999997 56789999999999999887      4699999988877666655544433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.37  E-value=3.9e-11  Score=126.51  Aligned_cols=172  Identities=10%  Similarity=-0.081  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVV  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  108 (581)
                      +...+..++.....++...++++|+.+.+|++..+++++.+.+.++..++.++.|+++|| +|||+++. +..+..++..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~-~~~~~~~~~~  285 (390)
T PRK03545        208 VSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLLI-AIALLLVCLL  285 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHH-HHHHHHHHHH
Confidence            333444445555556666788889988899999999999999999999999999999999 69887544 4444444333


Q ss_pred             HH-HHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          109 LL-WLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       109 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      +. ...+                       +...+++..++.|++.+...+...+.+.+..|+        .|+++.+++
T Consensus       286 ~l~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~  334 (390)
T PRK03545        286 LLLPAAN-----------------------SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD--------ATDVAMALF  334 (390)
T ss_pred             HHHHHhc-----------------------hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC--------cHHHHHHHH
Confidence            32 3333                       556677788888998887777777887776553        478999999


Q ss_pred             HHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcC
Q 039943          188 YVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLAS  233 (581)
Q Consensus       188 ~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~  233 (581)
                      +....+|..+||.++|++.+++|++..|++.+++.+++++......
T Consensus       335 ~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        335 SGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            9889999999999999999999999999998888877776655433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.37  E-value=3.4e-12  Score=133.71  Aligned_cols=168  Identities=15%  Similarity=0.061  Sum_probs=129.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~  106 (581)
                      .++...+..++....++.+..++|.|+++++|.+..+.+.+.....++..++.++.|+++|| +|||+.+..+..+..+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~  298 (394)
T TIGR00883       220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALL  298 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHH
Confidence            35555666667777788888999999988999999999999999999999999999999999 79999887655444332


Q ss_pred             H-HHH-HHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          107 V-VLL-WLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       107 ~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      . .+. .+..                     ..+...++...++.|++.+...+...+++.|.+|+       +.|+++.
T Consensus       299 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~~~~~  350 (394)
T TIGR00883       299 AVPLLMALLD---------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPT-------EVRYTGA  350 (394)
T ss_pred             HHHHHHHHhc---------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCc-------cceeeEe
Confidence            2 222 2221                     11455666777888888888889999999999998       5588888


Q ss_pred             HHHH-HHHhhHHHHHHHHHHhhhcccc-chhhhHHHHHHHH
Q 039943          185 SWYY-VSVLASSMVAVTCIVYIQDNLG-WKVGFGVPAVISL  223 (581)
Q Consensus       185 ~~~~-~~~~~g~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~  223 (581)
                      ++.+ ....+|..++|.++|++.++.| |++.++..++..+
T Consensus       351 ~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       351 SLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             eehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            8754 4556889999999999999888 8877666555433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.37  E-value=2.1e-11  Score=129.82  Aligned_cols=160  Identities=9%  Similarity=-0.002  Sum_probs=133.4

Q ss_pred             HhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 039943           42 SMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQP  121 (581)
Q Consensus        42 ~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (581)
                      ..++..++|.|+++.+|.+..+.+++.+...++..++.++.|++.|| .++++++..+.++..++.++..+.+       
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~-------  310 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLMP-------  310 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHccc-------
Confidence            35566788999988799999999999999999999999999999999 5888888888888777777766655       


Q ss_pred             CcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHH
Q 039943          122 PACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTC  201 (581)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~  201 (581)
                                      +.....+..++.|++.+...+...+++.|..|+       +.|++++++++...++|..+||.+
T Consensus       311 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~~g~~l  367 (417)
T PRK10489        311 ----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPD-------EMLGRINGLWTAQNVTGDAIGAAL  367 (417)
T ss_pred             ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HHHHHHHHHHHHHHhhhHhHHHHH
Confidence                            555667778888988888778888899999988       779999999999999999999999


Q ss_pred             HHhhhccccchhhhHHHHHHHHHHHHHHHhc
Q 039943          202 IVYIQDNLGWKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       202 ~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                      .|++.+..|++..+.+.+.+.++..++....
T Consensus       368 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  398 (417)
T PRK10489        368 LGGLGAMMTPVASASASGFGLLIIGVLLLLV  398 (417)
T ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence            9999999999888887776655544444443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.36  E-value=2.9e-11  Score=131.63  Aligned_cols=149  Identities=13%  Similarity=0.089  Sum_probs=116.6

Q ss_pred             hhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 039943           44 GLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPA  123 (581)
Q Consensus        44 ~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (581)
                      ....++|.|+++++|++..+++++.+...++..++.+++|+++|| +|||+++..+.++..++.++.....         
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~---------  362 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIG---------  362 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhcc---------
Confidence            456789999988999999999999999999999999999999999 7999999888766665544433322         


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHH
Q 039943          124 CDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIV  203 (581)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~  203 (581)
                                  +.+.+.+.+..++.+....+..+..++++.|.+|+       ++|++.+++++...++|..+||.+.|
T Consensus       363 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~g~~lgp~l~g  423 (496)
T PRK03893        363 ------------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT-------EQRAAGLGFTYNVGALGGALAPILGA  423 (496)
T ss_pred             ------------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCH-------HHhhcccchhhhhhhHHHHHHHHHHH
Confidence                        11333344444444433334456777888999988       67999999999999999999999999


Q ss_pred             hhhccccchhhhHHHHHH
Q 039943          204 YIQDNLGWKVGFGVPAVI  221 (581)
Q Consensus       204 ~i~~~~g~~~~f~~~~~~  221 (581)
                      ++.+.+||+..+.+.+..
T Consensus       424 ~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        424 LIAQRLDLGTALASLSFS  441 (496)
T ss_pred             HHhccCChHHHHHHHHHH
Confidence            999999998887655443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.36  E-value=4.4e-12  Score=112.10  Aligned_cols=133  Identities=16%  Similarity=0.227  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHH
Q 039943           68 LLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALG  147 (581)
Q Consensus        68 ~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (581)
                      .+.+.++..++.++.|+++|| +|||+.+..+..+..++.+.+....                       +.+.++..++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~   59 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALSS-----------------------NITVLIIARF   59 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhc-----------------------cHHHHHHHHH
Confidence            345667888899999999999 7999999999988888888777766                       6777888999


Q ss_pred             HHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHH
Q 039943          148 LMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSAL  227 (581)
Q Consensus       148 l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~  227 (581)
                      +.|++.+...+...+++.|.+|+       ++|++..+..+....+|..++|.+.+++.+..+|++.|++.++..++..+
T Consensus        60 ~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (141)
T TIGR00880        60 LQGFGAAFALVAGAALIADIYPP-------EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFI  132 (141)
T ss_pred             HHHHHHHHHHHhHHHHHHHHCCh-------hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998       66999999999999999999999999999888999999888776666554


Q ss_pred             HHHh
Q 039943          228 SFFL  231 (581)
Q Consensus       228 ~~~~  231 (581)
                      ....
T Consensus       133 ~~~~  136 (141)
T TIGR00880       133 LLAF  136 (141)
T ss_pred             HHhh
Confidence            4443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.35  E-value=2.5e-11  Score=129.90  Aligned_cols=175  Identities=11%  Similarity=0.043  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccC--chhhH-HHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVG--RYPMI-GFGCITYL  104 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~G--rr~~~-~~~~~~~~  104 (581)
                      ++.+.+..++....++++..++|.|+.+++|++..++++..+.+.+++.++.++.|+++|| ++  +|+.. ....+...
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~~~~~~  323 (434)
T PRK11663        245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIFAAGIL  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHHHHHHH
Confidence            4555555556666677788899999988899999999999999999999999999999999 62  33332 22222222


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      +....+.....                    . +.....+..++.|++............+|.+|+       +.|+++.
T Consensus       324 ~~~~~~~~~~~--------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~  375 (434)
T PRK11663        324 LSVGSLWLMPF--------------------A-SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK-------EAAGAAT  375 (434)
T ss_pred             HHHHHHHHccc--------------------c-cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH-------hhHHhHH
Confidence            22222111110                    0 222233333444443332223334566888877       6799999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh
Q 039943          185 SWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       185 ~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      ++.+...++|..++|.+.|++.++.||+..|++.+++.+++.+....
T Consensus       376 g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        376 GFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888877766554443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.35  E-value=6.8e-12  Score=119.72  Aligned_cols=134  Identities=16%  Similarity=0.183  Sum_probs=112.9

Q ss_pred             HHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccc
Q 039943           49 MILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLR  128 (581)
Q Consensus        49 l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (581)
                      +..+...+.+++.++..++++++..-..+.++++|++.||.+|-|..-++-++...+|.+..+...+             
T Consensus        66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi-------------  132 (459)
T KOG4686|consen   66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI-------------  132 (459)
T ss_pred             hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-------------
Confidence            5566777778888888999999999999999999999999889887777666677777777766541             


Q ss_pred             cccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhcc
Q 039943          129 SDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDN  208 (581)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~  208 (581)
                             ..++|.+.++|+++|+|.-....+..++...+|..       ++..-++++......+|+.+-..+.+++.+.
T Consensus       133 -------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKG-------KELn~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  133 -------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKG-------KELNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             -------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecC-------ccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence                   22789999999999999988888889999999988       6699999999999999999888888888765


Q ss_pred             c
Q 039943          209 L  209 (581)
Q Consensus       209 ~  209 (581)
                      .
T Consensus       199 ~  199 (459)
T KOG4686|consen  199 M  199 (459)
T ss_pred             H
Confidence            3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.34  E-value=3.3e-11  Score=127.63  Aligned_cols=167  Identities=11%  Similarity=-0.066  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHH
Q 039943           32 IANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLW  111 (581)
Q Consensus        32 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~  111 (581)
                      ....++....++.+..++|.|+. +.|++..+.+.+.+.+.++..++.++.|+++|| +|||+.+..+.+...++.+...
T Consensus       226 ~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~  303 (406)
T PRK11551        226 WISYFFTLIVLYFLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALA  303 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH
Confidence            33444455566677788888886 479999999999999999999999999999999 7999999887766666665555


Q ss_pred             HhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHH
Q 039943          112 LTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSV  191 (581)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (581)
                      +.+                       +.+.+++..++.|++.++..+...++..|.+|+       +.|++..++.+...
T Consensus       304 ~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~  353 (406)
T PRK11551        304 AAP-----------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPT-------QVRGTGVGAAVAVG  353 (406)
T ss_pred             hcC-----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcch-------hhhhhhhhHHHHhh
Confidence            544                       445566667778888878888899999999998       66999999999999


Q ss_pred             hhHHHHHHHHHHhhhccc-cchhhhHHHHHHHHHHHHHHH
Q 039943          192 LASSMVAVTCIVYIQDNL-GWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       192 ~~g~~~~p~~~~~i~~~~-g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      .+|..++|.+.|++.++. +|...+++.+...+++.+..+
T Consensus       354 ~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        354 RLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             hHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998864 455556555555555444433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.33  E-value=1.4e-11  Score=131.21  Aligned_cols=158  Identities=8%  Similarity=-0.009  Sum_probs=126.9

Q ss_pred             HhhhhhHHHHHhhhh---cCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhccc
Q 039943           42 SMGLMPNMILYLCGE---YNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQ  118 (581)
Q Consensus        42 ~~~~~~~l~~yl~~~---~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~  118 (581)
                      +......++.|+.+.   .+.+..+.+.+.++..++..++.++.|+++|| +|||+.+..+.++..++..+.++++    
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~~----  313 (420)
T PRK09528        239 YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFAT----  313 (420)
T ss_pred             HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhcc----
Confidence            333444566676543   35667788999999999999999999999999 7999999999998888888887766    


Q ss_pred             CCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHH-HHHHHhhHHHH
Q 039943          119 AQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSW-YYVSVLASSMV  197 (581)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~  197 (581)
                                         +.+.+++.+++.|++.+...+....++.|.+|+       +.|++.++. ++....+|.++
T Consensus       314 -------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~a~~~~~~~~~~~~lg~~i  367 (420)
T PRK09528        314 -------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDV-------RLSATIYLVGFQFAKQLGAVF  367 (420)
T ss_pred             -------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------cceeeeeeehHHHHHHHHHHH
Confidence                               567778889999998888878888899999987       457766654 56677899999


Q ss_pred             HHHHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 039943          198 AVTCIVYIQDNLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       198 ~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      +|.+.|++.+..||+..|.+.+++.++..+..+
T Consensus       368 g~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        368 LSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987776655544433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.33  E-value=4e-11  Score=125.38  Aligned_cols=176  Identities=15%  Similarity=0.044  Sum_probs=127.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhH-HHHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMI-GFGCITYLL  105 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~-~~~~~~~~~  105 (581)
                      .++...+..++.......+..+++.|+++.+|.+..+.+++.+...++..++.+++|+++|| +|||+.. ........+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~  294 (399)
T TIGR00893       216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAII  294 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHHH
Confidence            45556666777777788888899999999999999999999999999999999999999999 6999611 111111111


Q ss_pred             HH---HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhH
Q 039943          106 GV---VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS  182 (581)
Q Consensus       106 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (581)
                      +.   .+..+..+.                   ..+.........+.+.+.+ ..+...+++.|.+|+       +.|++
T Consensus       295 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~g~  347 (399)
T TIGR00893       295 AGLVLSLLMFATNY-------------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPG-------NIAGL  347 (399)
T ss_pred             HHHHHHHHHHHhcc-------------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcCh-------hHHHH
Confidence            11   111111100                   0122333333333344444 788999999999998       67999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhhcccc-chhhhHHHHHHHHHHHHHHH
Q 039943          183 YFSWYYVSVLASSMVAVTCIVYIQDNLG-WKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       183 ~~~~~~~~~~~g~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~i~~~~~~  230 (581)
                      ..++.+...++|..++|.+.|++.+..| |+..|++.++..+++.+..+
T Consensus       348 ~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       348 TGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888 99999888777666655443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.32  E-value=3.9e-11  Score=129.11  Aligned_cols=175  Identities=17%  Similarity=0.157  Sum_probs=122.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc--CchhhHH-HHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCV--GRYPMIG-FGCITY  103 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~--Grr~~~~-~~~~~~  103 (581)
                      .++...+..++.....+++..++|.|+++++|++..+++++...+.++..++.+++|+++|| +  |||+... ....+.
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~  332 (452)
T PRK11273        254 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLV  332 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHH
Confidence            35556666666677778888999999998899999999999999999999999999999999 7  4454332 222233


Q ss_pred             HHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          104 LLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                      .++.+++.+..                     ..+....+...++.|.+.........++..|.+|+       +.|+++
T Consensus       333 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~  384 (452)
T PRK11273        333 TIATIVYWLNP---------------------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTA  384 (452)
T ss_pred             HHHHHHHHHhc---------------------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh-------hhhhhH
Confidence            33333332221                     00223333444555544333223344566788988       679999


Q ss_pred             HHHHHHHHhhHHHH-HHHHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 039943          184 FSWYYVSVLASSMV-AVTCIVYIQDNLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       184 ~~~~~~~~~~g~~~-~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      .++.+...++|+.+ +|.+.|++.+..||+..|++.+...+++++...
T Consensus       385 ~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        385 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            99999888887654 799999999999999999888776666655443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.32  E-value=8.5e-11  Score=123.62  Aligned_cols=169  Identities=11%  Similarity=0.008  Sum_probs=143.3

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      |.++...+..++.....+...++.++|++ ++|.+..+.+.+.++..++..+..++.|++.|| +|+|+++.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHH
Confidence            34555666667777777788889999996 589999999999999999999999999999999 7999999999999999


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      ...+.++++                       +.+.++...++.|+..|...+....++.+. |+       +.|+++.+
T Consensus       283 ~~~~~~~~~-----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~-------~~~~~~q~  331 (382)
T TIGR00902       283 RWAIIGAIE-----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG-------SEIAKLQA  331 (382)
T ss_pred             HHHHHHhHh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH-------hhHHHHHH
Confidence            998888877                       778888999999999999999999999987 76       55888888


Q ss_pred             HHH-HHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHH
Q 039943          186 WYY-VSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALS  228 (581)
Q Consensus       186 ~~~-~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~  228 (581)
                      +++ ....+|..++|.++|++.|++|+ ..|.+.+++.+++++.
T Consensus       332 ~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       332 LYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            876 46679999999999999999986 5677666666655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.30  E-value=4.1e-11  Score=126.30  Aligned_cols=154  Identities=12%  Similarity=0.079  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHH-HHH
Q 039943           33 ANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVV-LLW  111 (581)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~-~~~  111 (581)
                      ....+......+...++|.|+.+++|++..+.+++.+...++..++.++.|+++|| +|||+.+..+.++..+... +..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~  323 (405)
T TIGR00891       245 VLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLIIPVFA  323 (405)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHHHHHHH
Confidence            33344455555677788999998999999999999999999999999999999999 7999999888766533322 222


Q ss_pred             HhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHH
Q 039943          112 LTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSV  191 (581)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (581)
                      ...                       +.+.+.+..++.++..++..+..++++.|.+|+       ++|++.+++.+...
T Consensus       324 ~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~  373 (405)
T TIGR00891       324 IGA-----------------------NVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPT-------DQRAAGLGFTYQLG  373 (405)
T ss_pred             hCC-----------------------chHHHHHHHHHHHHHHccchhhHHHHHhhhCCc-------chhHHHhhHHHHHH
Confidence            222                       445555666777777777778888999999988       66999999999999


Q ss_pred             hhHHHHHHHHHHhhhcccc-chhhhHH
Q 039943          192 LASSMVAVTCIVYIQDNLG-WKVGFGV  217 (581)
Q Consensus       192 ~~g~~~~p~~~~~i~~~~g-~~~~f~~  217 (581)
                      ++|..++|++.|++.+..| |+..+..
T Consensus       374 ~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       374 NLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHHHhccccchhHHh
Confidence            9999999999999999888 8766544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.30  E-value=5.1e-11  Score=128.29  Aligned_cols=172  Identities=10%  Similarity=0.025  Sum_probs=135.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc-cCchhhHHHHH--HHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSC-VGRYPMIGFGC--ITY  103 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~-~Grr~~~~~~~--~~~  103 (581)
                      .++...+..++..++++....+++.|++ ++|++..+++++.++..++..++.+++|+++||. +++|+...++.  ++.
T Consensus       242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  320 (455)
T TIGR00892       242 GFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN  320 (455)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence            3455556666677777888889999986 5799999999999999999999999999999972 23343333333  333


Q ss_pred             HHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          104 LLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                      .++.+++.+..                       +.+.+++.+++.|++.+...+...+++.|.+|+       +++++.
T Consensus       321 ~l~~ll~~~~~-----------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~-------~~~g~~  370 (455)
T TIGR00892       321 GLTHLLCALAG-----------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA-------QRFSSA  370 (455)
T ss_pred             HHHHHHHHHhc-----------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH-------HHHhhH
Confidence            33444444444                       567778889999999999999999999999987       679999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhhccc-cchhhhHHHHHHHHHHHHHH
Q 039943          184 FSWYYVSVLASSMVAVTCIVYIQDNL-GWKVGFGVPAVISLLSALSF  229 (581)
Q Consensus       184 ~~~~~~~~~~g~~~~p~~~~~i~~~~-g~~~~f~~~~~~~~i~~~~~  229 (581)
                      +++++...++|..+||.++|++.+.. +|++.|++.+++.+++.+..
T Consensus       371 ~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~  417 (455)
T TIGR00892       371 VGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL  417 (455)
T ss_pred             HhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence            99999999999999999999998877 59999999888766665543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.30  E-value=1.1e-10  Score=122.57  Aligned_cols=158  Identities=18%  Similarity=0.171  Sum_probs=123.7

Q ss_pred             HHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhc
Q 039943           37 FERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTIL  116 (581)
Q Consensus        37 ~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~  116 (581)
                      +....+.....++|.|+++ .|.+.++.+++.+...++..++.++.|+++|| +|||+++..+.++..++..... ..  
T Consensus       211 ~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~~--  285 (381)
T PRK03633        211 ISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-SQ--  285 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-hh--
Confidence            3334444455678888864 69999999999999999999999999999999 6999999888877777654432 11  


Q ss_pred             ccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHH
Q 039943          117 SQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSM  196 (581)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  196 (581)
                                             ...+..+.+.|++.+...|...+.+.|..|+       ++++...+.++...++|..
T Consensus       286 -----------------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lG~~  335 (381)
T PRK03633        286 -----------------------AAMAPALFILGAAGFTLYPVAMAWACEKVEH-------HELVAMNQALLLSYTVGSL  335 (381)
T ss_pred             -----------------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCH-------HHHHHHHHHHHHHHHHHHH
Confidence                                   1223456677777777789999988998877       4577778888888899999


Q ss_pred             HHHHHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 039943          197 VAVTCIVYIQDNLGWKVGFGVPAVISLLSALSF  229 (581)
Q Consensus       197 ~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~  229 (581)
                      +||.++|++.|+.||++.|.+.+.+.+++.+..
T Consensus       336 igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        336 LGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998877776555443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.28  E-value=7.2e-10  Score=113.34  Aligned_cols=134  Identities=9%  Similarity=0.042  Sum_probs=101.1

Q ss_pred             HHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccc
Q 039943           49 MILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLR  128 (581)
Q Consensus        49 l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (581)
                      ...|.++.+| +...+.|...+|.+.+....+++-|+.|| +|-|...+++..+..+|..+=..+.+ +.+.        
T Consensus        67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss~-p~v~--------  135 (480)
T KOG2563|consen   67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISSL-PFVP--------  135 (480)
T ss_pred             HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhccC-cccc--------
Confidence            3346666677 77788899999999999999999999999 79999999999999999988877762 2111        


Q ss_pred             cccccccchhHH--HHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhh
Q 039943          129 SDCESATWSQLM--LLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQ  206 (581)
Q Consensus       129 ~~~~~~~~~~~~--~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~  206 (581)
                              ..++  ....+-.+.+.+.-.....-+...+-+|++       ++|..+..+-.++..+|.++|.++...+.
T Consensus       136 --------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~-------~qra~A~~~~v~~n~LGvavg~llppilV  200 (480)
T KOG2563|consen  136 --------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPP-------DQRAIATVLGVMGNPLGVAVGFLLPPILV  200 (480)
T ss_pred             --------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCc-------chhhhhhhHHHhcchHHHHHHhhccceec
Confidence                    1334  556666667666665555555666667887       56899888877777788888877766665


Q ss_pred             cc
Q 039943          207 DN  208 (581)
Q Consensus       207 ~~  208 (581)
                      .+
T Consensus       201 ~~  202 (480)
T KOG2563|consen  201 PS  202 (480)
T ss_pred             CC
Confidence            43

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.28  E-value=1.7e-10  Score=118.36  Aligned_cols=176  Identities=17%  Similarity=0.052  Sum_probs=146.3

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      +.++...+..++...+.|...+|+-+++++..|++.+..+++..+|.++..++..++|+++||  +.|+++.....+.++
T Consensus       211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~  288 (394)
T COG2814         211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL  288 (394)
T ss_pred             chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence            356777788888888889999999999999999999999999999999999999999999999  788888888788777


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      ....+.+..+                      +.+...+..++.|++..........-.++..|        +.+..+.+
T Consensus       289 ~~l~l~~~~~----------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p--------~~~~~a~s  338 (394)
T COG2814         289 ALLALTFTGA----------------------SPALALALLFLWGFAFSPALQGLQTRLARLAP--------DAADLAGS  338 (394)
T ss_pred             HHHHHHHhcc----------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC--------CchHHHHH
Confidence            7777666651                      45566666777888777666556666565333        35888999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcC
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLAS  233 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~  233 (581)
                      ++....|+|..+|..++|.+.+++|+....++.++..+++++..+...
T Consensus       339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888877665543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.27  E-value=2.4e-10  Score=122.53  Aligned_cols=183  Identities=18%  Similarity=0.163  Sum_probs=150.0

Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCch--hhHHHHHH
Q 039943           24 GLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRY--PMIGFGCI  101 (581)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr--~~~~~~~~  101 (581)
                      +.|.+...++..++.+-+..++......|.++++|++..+...+..+.++...+|+++.|++.|| +|.|  ++++++++
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~  357 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLI  357 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHH
Confidence            34566777777888888888899999999999999999999999999999999999999999999 7999  89988887


Q ss_pred             HHHHHHHHHHH--hhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchh
Q 039943          102 TYLLGVVLLWL--TTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGA  179 (581)
Q Consensus       102 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  179 (581)
                      +..+..+.-.+  ..+..                 ...+.+.+++.-++.|+..|+.++..-++.+|+.|+       ++
T Consensus       358 ~~~~i~~~g~~G~~~~~~-----------------g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~-------g~  413 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPSFF-----------------GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP-------GR  413 (477)
T ss_pred             HHHHHHHHHHHHhhhccc-----------------CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC-------ch
Confidence            77443333222  22100                 011556688888899999999999999999999999       56


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHhhhcccc-chhhhHHHHHHHHHHHHHHHh
Q 039943          180 LQSYFSWYYVSVLASSMVAVTCIVYIQDNLG-WKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       180 r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      .+..+|++.......+.+||.+.|.+.+..| .|+.+....+..+++++++..
T Consensus       414 e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  414 EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence            8999999999999999999999999998876 888887777777777666544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00897 2A0118 polyol permease family

Probab=99.26  E-value=2.5e-10  Score=120.87  Aligned_cols=174  Identities=11%  Similarity=0.029  Sum_probs=128.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH-HHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIG-FGCITYLL  105 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~-~~~~~~~~  105 (581)
                      .++...+..++....+++...+.|.|++ ++|++..+.+++.+...++..++.++.|+++|| +|||+.+. .+.+...+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~  300 (402)
T TIGR00897       223 NVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGI  300 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHH
Confidence            3455556667777888888999998885 589999999999999999999999999999999 79988764 23333333


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +.+.+......                  ...+.+..++..++.|++.+...+. .+...|..|        ++|+++++
T Consensus       301 ~~~~l~~~~~~------------------~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~--------~~~g~~~g  353 (402)
T TIGR00897       301 FTLALYYIPQH------------------FGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP--------KHKGAAMS  353 (402)
T ss_pred             HHHHHHHHHHc------------------cCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc--------chhHHHHH
Confidence            33333322200                  0113455566777888887776553 455566543        35999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSF  229 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~  229 (581)
                      +.+...++|..++|.+.|++.+..||...|++.+++.+++.+..
T Consensus       354 ~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~  397 (402)
T TIGR00897       354 VLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT  397 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998887776655443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.25  E-value=2.6e-10  Score=123.88  Aligned_cols=177  Identities=13%  Similarity=0.073  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHH-HHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLL-IWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~-~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      +.+.+..++.....+....+.++|+.+++|++.++.+++.. ...++..++.+++|+++|| +|||+.+.++.++.+++.
T Consensus       225 ~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        225 WLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHH
Confidence            33444445555666666678888988889999999999875 5567899999999999999 799998877666555544


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      +........                   ..+...+....++..+..|...+...++..+..++       +.+++.+++.
T Consensus       304 l~~~~l~~~-------------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~-------~~~~t~~gl~  357 (491)
T PRK11010        304 AGYWLLSIT-------------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNK-------SFSATQFALL  357 (491)
T ss_pred             HHHHHHHhc-------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCcHHHHHHH
Confidence            333221100                   01333444455555555555556677888888887       5578889999


Q ss_pred             HHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhc
Q 039943          188 YVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       188 ~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                      +...++|..+++.+.|++.+..||+..|.+.+++.+++++.....
T Consensus       358 ~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        358 SALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888899999999999999998888887776665544

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.25  E-value=1.5e-10  Score=121.40  Aligned_cols=185  Identities=12%  Similarity=0.084  Sum_probs=137.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhh-hcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCc-hhhHH
Q 039943           20 NPKGGLRTLPFIIANEAFERMASMGLMPNMILYLCG-EYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGR-YPMIG   97 (581)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Gr-r~~~~   97 (581)
                      ..+.+||.+++..+..++..+.+....+-+-+|+++ +.+-+.+-.|+++++..++.+++.+..|+...| -|+ |+-++
T Consensus        28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pli  106 (488)
T KOG2325|consen   28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPLI  106 (488)
T ss_pred             ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCHH
Confidence            346789999999999999999988888888889975 477788889999999999999999999999999 574 66667


Q ss_pred             HHHHHHHHHHHHH-HHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCccc
Q 039943           98 FGCITYLLGVVLL-WLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKS  176 (581)
Q Consensus        98 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~  176 (581)
                      .|.++.++|.++. ++.. .+                  +...+.++++|++.|+|.|.. ...-+++++....+     
T Consensus       107 ~s~ii~~~g~llY~~l~~-~~------------------~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~-----  161 (488)
T KOG2325|consen  107 VSFLIAIIGNLLYLALAY-VP------------------NGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVE-----  161 (488)
T ss_pred             HHHHHHHHHHHHHHHHHh-cc------------------cchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCcc-----
Confidence            7888999988888 4443 11                  125788999999999997764 56778888866553     


Q ss_pred             chhhhHHHHHHHHHHhhHHHHHHHHHHhhh----ccc---------cchhhhHHHHHHHHHHHHHHHhc
Q 039943          177 KGALQSYFSWYYVSVLASSMVAVTCIVYIQ----DNL---------GWKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       177 ~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~----~~~---------g~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                        .|.++++....+..+|..+||.+...+.    +.+         -|..+-|+.+++.++..+...+.
T Consensus       162 --dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~  228 (488)
T KOG2325|consen  162 --DRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFF  228 (488)
T ss_pred             --chHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhh
Confidence              4788888777777777777776654432    111         14445566666655555544443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.25  E-value=1.8e-10  Score=123.37  Aligned_cols=152  Identities=13%  Similarity=0.022  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHH-HHH
Q 039943           33 ANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVV-LLW  111 (581)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~-~~~  111 (581)
                      +..++....++++..++|.|+++.+|++..+.+++..++.++..++.+++|+++|| +|||+++..+.++..+... ...
T Consensus       245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~  323 (434)
T PRK15075        245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPALS  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHH
Confidence            33444566677888999999998899999999999999999999999999999999 7999998876554433221 111


Q ss_pred             HhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHH
Q 039943          112 LTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSV  191 (581)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (581)
                      ....                    ..+.........+.+++.+...+....++.|.+|+       +.|+++.++.+...
T Consensus       324 ~~~~--------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~-------~~rg~~~g~~~~~~  376 (434)
T PRK15075        324 WLVA--------------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPA-------EVRTAGFSLAYSLA  376 (434)
T ss_pred             HHHc--------------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCC-------CccchheeHHHHHH
Confidence            1110                    01222333444555666666667777889999998       66899998865544


Q ss_pred             h-hHHHHHHHHHHhhhccccch
Q 039943          192 L-ASSMVAVTCIVYIQDNLGWK  212 (581)
Q Consensus       192 ~-~g~~~~p~~~~~i~~~~g~~  212 (581)
                      + +++.++|.+.|++.+..|+.
T Consensus       377 ~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        377 TAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHhhhHHHHHHHHHHhcCCc
Confidence            4 46788999999999988864

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.24  E-value=1.3e-10  Score=118.02  Aligned_cols=183  Identities=10%  Similarity=0.022  Sum_probs=144.7

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      .+..|.+.+..+...-++-++..++|.|+++++++++.+++.+...+.+...+..+.+|+|+|| +|.+|+.++....++
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHH
Confidence            3456777777777777788899999999999999999999999999999999999999999999 799999999998888


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      ++..+..+..+...                ...+...++...+..++..|.-......++...+|+        +-+.+.
T Consensus       296 ~~~~~l~~~~~~~~----------------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~--------~~G~v~  351 (417)
T COG2223         296 LAAALLSLFLTGFG----------------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK--------ETGAVT  351 (417)
T ss_pred             HHHHHHHccccccc----------------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh--------hhhHHH
Confidence            88877777641110                012444455545555555555556677788888875        478889


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhhcccc-chhhhHHHHHHHHHHHHHHHhc
Q 039943          185 SWYYVSVLASSMVAVTCIVYIQDNLG-WKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       185 ~~~~~~~~~g~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                      ++.....++|+..-|...+...+..| +...|++...+.+++....+..
T Consensus       352 G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         352 GIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888877 8888988887777776655443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.23  E-value=1.3e-09  Score=116.24  Aligned_cols=159  Identities=16%  Similarity=0.098  Sum_probs=119.5

Q ss_pred             HHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc--c--CchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcc
Q 039943           49 MILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSC--V--GRYPMIGFGCITYLLGVVLLWLTTILSQAQPPAC  124 (581)
Q Consensus        49 l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~--~--Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (581)
                      ..+|+++++|+++.+...+.+...+-..+ .++.|.++|.+  +  .||+-++++.++..++...+++.+..        
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~--------   82 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS--------   82 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc--------
Confidence            44678899999999998877777665554 57889999994  2  35556666666665556655554411        


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHh
Q 039943          125 DQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVY  204 (581)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  204 (581)
                                 ..+.....+..++..+|.........+++.|...++.     +.|+...+..+....+|+.++..++|.
T Consensus        83 -----------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p-----~~~g~lqS~~~~~~~~G~lv~~~l~G~  146 (433)
T PF03092_consen   83 -----------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREP-----ESRGDLQSFVWGVRSVGSLVGSLLSGP  146 (433)
T ss_pred             -----------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC-----chhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                       1144455566777888888999999999999987665     348888999999999999999999999


Q ss_pred             hhccccchhhhHHHHHHHHHHHHHHHhc
Q 039943          205 IQDNLGWKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       205 i~~~~g~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                      +.+..++++.|.+.++..++..+..+..
T Consensus       147 l~~~~~~~~~f~i~~~~~~l~~~~~~~~  174 (433)
T PF03092_consen  147 LLDSFGPQGVFLISAALPLLMLIVALFL  174 (433)
T ss_pred             hhhcCCCeEEehHHHHHHHHHHHHHHHh
Confidence            9999999999998877666555444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.23  E-value=3.1e-10  Score=122.04  Aligned_cols=166  Identities=13%  Similarity=0.073  Sum_probs=119.5

Q ss_pred             hhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcc
Q 039943           45 LMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPAC  124 (581)
Q Consensus        45 ~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (581)
                      +..+.+ ++.+++|++..+.++......++..++.+++|+++|| +|||+.+.+++++.+++.+++.+......      
T Consensus       303 ~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  374 (481)
T TIGR00879       303 IMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFV------  374 (481)
T ss_pred             hHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhccc------
Confidence            334444 4456789999989999999999999999999999999 79999999998888887777663220000      


Q ss_pred             cccccccccc-cchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHH
Q 039943          125 DQLRSDCESA-TWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIV  203 (581)
Q Consensus       125 ~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~  203 (581)
                             ... ...+...+....+..+....+..+...+++.|.+|+       +.|+++.++.+...++|.+++|.+.+
T Consensus       375 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~~~~~~~~lg~~i~~~~~~  440 (481)
T TIGR00879       375 -------TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPL-------SLRPKGISIAVAANWLANFIVGFLFP  440 (481)
T ss_pred             -------CCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   000 000122222222222222233446677788999998       67999999999999999999999999


Q ss_pred             hhhccccchhhhHHHHHHHHHHHHHHHhc
Q 039943          204 YIQDNLGWKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       204 ~i~~~~g~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                      ++.++.+|++.|++.+++.+++.+...+.
T Consensus       441 ~~~~~~~~~~~f~~~~~~~~~~~i~~~~~  469 (481)
T TIGR00879       441 TMLESIGVGGVFIFFGGLNVLGLIFVYFF  469 (481)
T ss_pred             HHHHhcCccceehhHHHHHHHHHHHHhee
Confidence            99998899999998887777666655443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.22  E-value=4.5e-10  Score=120.19  Aligned_cols=167  Identities=13%  Similarity=-0.040  Sum_probs=110.3

Q ss_pred             HHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHH-hhh
Q 039943           37 FERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWL-TTI  115 (581)
Q Consensus        37 ~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~-~~~  115 (581)
                      +....+|++..++|.|+.+.+|++..+.+...++..++..++.++.|+++|| +|||+++.++.++..+....... ..+
T Consensus       254 ~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~  332 (432)
T PRK10406        254 AGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSALQN  332 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3467788899999999998899999999998888888888999999999999 79999887766544333221211 110


Q ss_pred             cccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhh-H
Q 039943          116 LSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLA-S  194 (581)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g  194 (581)
                                          ..+....+....+..+..+...+...++.+|.+|+       +.|++++++.+...++ +
T Consensus       333 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~-------~~r~t~~g~~~~~g~~~~  385 (432)
T PRK10406        333 --------------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPA-------QVRALGVGLSYAVANALF  385 (432)
T ss_pred             --------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CccchhhhHHHHHHHHHH
Confidence                                00122212222222233333445577888999998       6799999998876553 3


Q ss_pred             HHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh
Q 039943          195 SMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       195 ~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      +..+|.+.+++.....|...+++.++..+++++..++
T Consensus       386 g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        386 GGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            5557877776643323555666555555555544433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.21  E-value=2.1e-09  Score=109.49  Aligned_cols=368  Identities=15%  Similarity=0.092  Sum_probs=198.5

Q ss_pred             hhhHHHHHhhhhcCC---cc----hhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH-HHHHHHHHHHHHHHHhhhc
Q 039943           45 LMPNMILYLCGEYNM---ET----TAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIG-FGCITYLLGVVLLWLTTIL  116 (581)
Q Consensus        45 ~~~~l~~yl~~~~~~---s~----~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~-~~~~~~~~~~~~~~~~~~~  116 (581)
                      ...+.|+|+++..+-   +.    +-.+...++..+..++..|+-|.++|+ .|+||-.+ ....+.++.+..+++.+  
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i~--  110 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFIP--  110 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHhC--
Confidence            446678888876554   33    334666788888999999999999999 58665554 44455566677777766  


Q ss_pred             ccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHH
Q 039943          117 SQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSM  196 (581)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  196 (581)
                                        +..+++...+..++..++.........+++.+..++++       .++..++-+....+|+.
T Consensus       111 ------------------~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~-------~~riS~lg~~~gylgs~  165 (438)
T COG2270         111 ------------------PGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN-------MGRISGLGWALGYLGSV  165 (438)
T ss_pred             ------------------CCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc-------cCcccccccccccccch
Confidence                              12356677777888889999988999999999888744       33333443444456666


Q ss_pred             HHHHHHHh--h-h---------------ccccchhhhHHHHHHHHHHHHHHHhcCCcccccC-CCCChhhhHHHHHHHHH
Q 039943          197 VAVTCIVY--I-Q---------------DNLGWKVGFGVPAVISLLSALSFFLASPFYVQSK-ANTSLLTGLIQVLVASY  257 (581)
Q Consensus       197 ~~p~~~~~--i-~---------------~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  257 (581)
                      +.-+++-.  + .               +...-|..+.+.++..++..+-+++..+..++.+ |.......-.+.+...+
T Consensus       166 i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~  245 (438)
T COG2270         166 ILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTF  245 (438)
T ss_pred             HHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHH
Confidence            55544311  1 1               1223455666666554444444444333222111 11111111111111111


Q ss_pred             hhccccccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHh
Q 039943          258 KNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWST  337 (581)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (581)
                      ++-+                                                              .++.   ...+++.
T Consensus       246 k~i~--------------------------------------------------------------~~~~---i~~FLiA  260 (438)
T COG2270         246 KEIR--------------------------------------------------------------GRKN---LVLFLIA  260 (438)
T ss_pred             HHHh--------------------------------------------------------------cccc---hHHHHHH
Confidence            1110                                                              0010   1111111


Q ss_pred             hHHHHHhhcCCChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHH
Q 039943          338 GIMIAVTISQSSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLL  417 (581)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~  417 (581)
                      ...+.-..+  +..-.-...-..    .++++...+..+..+..+++ .+...+...+.+|++.|       +.+.++++
T Consensus       261 ~~~~~DGv~--til~~~~~fg~~----~~gls~~~lll~g~~~~vvA-~lg~ii~g~Ld~rfg~k-------~vl~~~lv  326 (438)
T COG2270         261 RFFYIDGVN--TILAMGGVFGAA----DLGLSSTELLLIGIALSVVA-ALGAIIAGFLDERFGSK-------PVLMIGLV  326 (438)
T ss_pred             HHHHHhhHH--HHHHHHHHHHHH----HcCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCc-------eeehHHHH
Confidence            111000000  000000000000    11122233332222222222 22233344466665555       46666666


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHH
Q 039943          418 FSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGL  497 (581)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~  497 (581)
                      +..+..+.....+.                   +..+|   +.-.+.+...+.....+-+|..+.+|++..+...|++++
T Consensus       327 i~~~~~~~~~~~~~-------------------~~~f~---i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyal  384 (438)
T COG2270         327 ILSIAALYLIFLEG-------------------ELDFW---ILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYAL  384 (438)
T ss_pred             HHHHHHHHHHHccc-------------------cHHHH---HHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhh
Confidence            55544433332211                   12222   223556677778888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 039943          498 GMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLAC  556 (581)
Q Consensus       498 ~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~  556 (581)
                      ....+.++++.+.+.+.+.++.               ....+..+.++.+++.+..+..
T Consensus       385 tgra~S~~gp~lv~v~t~iTg~---------------~r~g~~~i~vll~iGl~~L~~v  428 (438)
T COG2270         385 TGRAASFLGPFLVAVITQITGS---------------SRAGVLSIIVLLLIGLLLLLRV  428 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcc---------------hhhHHHHHHHHHHhhHhhEEee
Confidence            9999999999999999887642               2344555566666666554443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.20  E-value=1.1e-09  Score=115.28  Aligned_cols=166  Identities=12%  Similarity=-0.003  Sum_probs=130.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~  106 (581)
                      .++...+..++....+....++++.|+. +.|++..+.+.+.++..++..+..++.|++.|| +|+|+++..+.+...++
T Consensus       206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~~  283 (382)
T PRK11128        206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVVR  283 (382)
T ss_pred             hHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHH
Confidence            3454555555556666667788888985 589999999999998889999999999999999 79999999999888888


Q ss_pred             HHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHH
Q 039943          107 VVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSW  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (581)
                      .+++...+                       +.+.+++..++.|++.+...+....++.+. ++       +++++..+.
T Consensus       284 ~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~  332 (382)
T PRK11128        284 WGLMGSTT-----------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PG-------SEVIRLQAL  332 (382)
T ss_pred             HHHHHhhh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CH-------hhhHHHHHH
Confidence            77776665                       677788889999999998888888887775 33       346778887


Q ss_pred             HH-HHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHH
Q 039943          187 YY-VSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSA  226 (581)
Q Consensus       187 ~~-~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~  226 (581)
                      +. ....+|..+||.++|++.|.+|+ ..|+..+++.++++
T Consensus       333 ~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        333 YSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            76 45578889999999999999887 45665555555443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.19  E-value=6.9e-10  Score=113.11  Aligned_cols=160  Identities=10%  Similarity=0.031  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhh--cCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGE--YNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      ++...+..++....-.++..|++.|+.+.  +|++.+++++..+.+..+++++.++++++.|| +|+||++.++.++.++
T Consensus       142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~~  220 (310)
T TIGR01272       142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAVL  220 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHH
Confidence            44433444443334556788999999753  79999999999999999999999999999999 7999999888877777


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +.++....+                       +... ..+..+.|++.+..+|...+...+.+|++        .+++.+
T Consensus       221 ~~~l~~~~~-----------------------~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~--------~~~asa  268 (310)
T TIGR01272       221 LSIGAALTH-----------------------GYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH--------TSQGSG  268 (310)
T ss_pred             HHHHHHHcC-----------------------CHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------hhhhHH
Confidence            665554433                       1222 23455789999999999999988888762        233334


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHH
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVI  221 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~  221 (581)
                      +. ....+|+++.|.+.|.+.|..|.+.+|++..++
T Consensus       269 i~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       269 IL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             HH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            43 456799999999999999988988888765554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.18  E-value=2.7e-09  Score=113.41  Aligned_cols=353  Identities=15%  Similarity=0.117  Sum_probs=203.1

Q ss_pred             HHHHHHHHHHhhhhhHHHHHhhhhcCCcchh-hHHHHHHH----HHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           33 ANEAFERMASMGLMPNMILYLCGEYNMETTA-GTNVLLIW----TAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-~~~i~~~~----~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      +...+.....+........+....++.+..+ .+......    .+...+.++.-|.++|| +|||..+...++...+..
T Consensus        28 fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~~~~~l~~  106 (463)
T KOG2816|consen   28 FLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDR-YGRKVVLLLPLFGTILPA  106 (463)
T ss_pred             HHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhh-hhhhhhHHHHHHHHHHhH
Confidence            3333333333444455555555444443322 23333333    57788999999999999 699999999998888888


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHH--hccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSL--GGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +...+..                         +++++   +.++  +.+...+...++++|....       ++|...++
T Consensus       107 ~~~~~~~-------------------------~~~~~---~~~l~g~~~~~~s~~~a~vadis~~-------~~R~~~~g  151 (463)
T KOG2816|consen  107 LCLLFQG-------------------------YWFFL---LLGLSGGFSAIFSVGFAYVADISSE-------EERSSSIG  151 (463)
T ss_pred             HHHHHHH-------------------------HHHhh---hcccccchhhhhhhhhhheeeccch-------hHHHHHHH
Confidence            8777754                         22222   3332  2344566677888888777       67999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhcccccc
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLS  265 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (581)
                      +.+.....+..++|.+++.+.+..|...+|.+..+..++..+......|+..+++.++..            ..+.. .+
T Consensus       152 ll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~------------~~~~~-~~  218 (463)
T KOG2816|consen  152 LLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDA------------TLREL-TP  218 (463)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccc------------ccccc-CC
Confidence            999999999999999999999999999999999988888777666655543322211100            00000 00


Q ss_pred             CccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHHHhh
Q 039943          266 SQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTI  345 (581)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (581)
                                         .....+..                  ..+++..  ...++.|..+..+.........-..-
T Consensus       219 -------------------~~~~~~~~------------------~~~~~~~--~~~~~~r~~l~l~l~~~~~~~~~~~~  259 (463)
T KOG2816|consen  219 -------------------GSLDSSHV------------------ADAFQSL--TKVGPDRLLLLLLLVAFLSSLPEAGG  259 (463)
T ss_pred             -------------------Ccccchhh------------------hhhhhhh--cccCCCccchHHHHHHHHHHHHHhcC
Confidence                               00000000                  0000000  00011122221111111111111000


Q ss_pred             cCCChhheecccCCCCCCCCcccCcccccc-------hhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHH
Q 039943          346 SQSSFPVLQASTMDRHITPNFEIPSGSFGI-------FTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLF  418 (581)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~  418 (581)
                      .+-..+++.    +..    +.++....+.       ...+..++..|+       +.+.++.|       +.+..|+..
T Consensus       260 ~~~~~~~yl----~~~----f~w~~~~~s~~~~~~~~~~~i~~l~~~~~-------l~~~l~~~-------~~i~lGl~~  317 (463)
T KOG2816|consen  260 ASDVLLLYL----KAK----FGWNKKEFSDLLSLVSILGIISQLLLLPL-------LSSILGEK-------RLISLGLLS  317 (463)
T ss_pred             ceeEEEEEE----eee----cCcCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhh-------hHhhHHHHH
Confidence            010111111    111    1233322221       122222222222       34444444       478888888


Q ss_pred             HHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHH
Q 039943          419 STASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLG  498 (581)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~  498 (581)
                      ..+.+.++++..                      ..|... .............|...+++...+.++.+|..+++....
T Consensus       318 ~~~~~~~~af~~----------------------~~w~~~-~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i  374 (463)
T KOG2816|consen  318 EFLQLLLFAFAT----------------------ETWMMF-AAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGI  374 (463)
T ss_pred             HHHHHHHHHHhc----------------------cchhhh-HHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHH
Confidence            888888888743                      333322 223334445777888888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhh
Q 039943          499 MSVASLVASFIMNAVDEITK  518 (581)
Q Consensus       499 ~~ig~~i~~~i~~~i~~~~~  518 (581)
                      ..+.+.+++.+.+.+...+.
T Consensus       375 ~~l~~~~~~~~~~~i~~~t~  394 (463)
T KOG2816|consen  375 EGLSGVVSPALYGNIFALTL  394 (463)
T ss_pred             HHHhhhhhHHHHHHHHHHHH
Confidence            99999999999888876554

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.17  E-value=6e-10  Score=115.51  Aligned_cols=154  Identities=12%  Similarity=0.044  Sum_probs=128.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhh-hHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLM-PNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      .++...+..++....+++.. .+.|.|.++.+|.+..+.+.+.....++..++.++.|++.|| +|||+.+..+.++..+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~  289 (365)
T TIGR00900       211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIGL  289 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHH
Confidence            44555555556666666665 677777777799999999999999999999999999999999 7999999888777777


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +..+..+..                     + +.+.+++..++.|++.+...+...+++.|.+|+       +.|++..+
T Consensus       290 ~~~~~~~~~---------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~  340 (365)
T TIGR00900       290 AILVVGLTP---------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA-------ELLGRVFG  340 (365)
T ss_pred             HHHHHHhhc---------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHH
Confidence            766666654                     1 266777888999999999999999999999998       77999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhcccc
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLG  210 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g  210 (581)
                      +.+...++|..++|.++|++.+.+|
T Consensus       341 ~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       341 AQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999987654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.17  E-value=1.1e-09  Score=115.30  Aligned_cols=170  Identities=11%  Similarity=0.039  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVV  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  108 (581)
                      +......++.....+....+.++|+.+.+|++..+.+++.+...++..++.++.|++.|| +|+|+.+..+..+.+++.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~~  280 (382)
T PRK10091        202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLALL  280 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHHH
Confidence            333333444444555556677888888899999999999999999999999999999999 7999999988888777775


Q ss_pred             HHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHH
Q 039943          109 LLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYY  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (581)
                      +.....+                      +.+......++.+++.++..+.......+..+++      +.++..  ..+
T Consensus       281 ~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~  330 (382)
T PRK10091        281 MLFFFGG----------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGG------ELLGAA--GGQ  330 (382)
T ss_pred             HHHHHHh----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc------hHHHHH--HHH
Confidence            5544320                      2233444445555655444444443333333221      234443  335


Q ss_pred             HHHhhHHHHHHHHHHhhhcc-ccchhhhHHHHHHHHHHHHHH
Q 039943          189 VSVLASSMVAVTCIVYIQDN-LGWKVGFGVPAVISLLSALSF  229 (581)
Q Consensus       189 ~~~~~g~~~~p~~~~~i~~~-~g~~~~f~~~~~~~~i~~~~~  229 (581)
                      ....+|..+||.++|++.+. .+|++.+.+.++..++.....
T Consensus       331 ~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        331 IAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             HHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence            56789999999999999885 689999998877665554433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.16  E-value=6.5e-10  Score=119.13  Aligned_cols=178  Identities=16%  Similarity=0.132  Sum_probs=121.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH-
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL-  105 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~-  105 (581)
                      .++...+..++.....+++..++|.|+++..|++..+++++..++.++..++.+++|+++|| +|+++....+..+..+ 
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~  330 (438)
T TIGR00712       252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLV  330 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHH
Confidence            34555556666667778888999999998899999999999999999999999999999999 6754433333322222 


Q ss_pred             --HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          106 --GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       106 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                        +...+....                     ..+.+..+...++.|++..+..........|.+|+       +.|+++
T Consensus       331 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~  382 (438)
T TIGR00712       331 TIAVIVYWMNP---------------------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTA  382 (438)
T ss_pred             HHHHHHHHhcC---------------------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh-------hheeee
Confidence              112212211                     00223333344445544332222223456788887       679999


Q ss_pred             HHHHHHHHhhH-HHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcC
Q 039943          184 FSWYYVSVLAS-SMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLAS  233 (581)
Q Consensus       184 ~~~~~~~~~~g-~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~  233 (581)
                      .++.+...++| ..++|.+.|++.++.||...|++.+...+++.+..+..+
T Consensus       383 ~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  433 (438)
T TIGR00712       383 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  433 (438)
T ss_pred             hhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            99998887776 578999999999999999999887776666655544433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.16  E-value=6.5e-10  Score=118.13  Aligned_cols=164  Identities=11%  Similarity=-0.056  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhh-hcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhH-HHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCG-EYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMI-GFGCITYLL  105 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~-~~~~~~~~~  105 (581)
                      ++...+..++....++++..++|.|+++ ..+++..+++++.....++..++.+++|+++|| ++||+.. ....++..+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~~~  322 (412)
T TIGR02332       244 IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFAAA  322 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHHHH
Confidence            4555566667777888899999999976 357788899999999999999999999999999 7987753 333333333


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +..+.....                       +....+.+..+.++|.....+...+...|.+|+       +.|+++++
T Consensus       323 ~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~a~g  372 (412)
T TIGR02332       323 GWLLASATD-----------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISL-------QARAIAIA  372 (412)
T ss_pred             HHHHHHhcC-----------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccch-------HHHHHHHH
Confidence            332221111                       111112222233333333334444555667776       67999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhcccc-chhhhHHHHHHH
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLG-WKVGFGVPAVIS  222 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g-~~~~f~~~~~~~  222 (581)
                      +.+...++|.+++|.+.|.+.+..| |++.|++.++..
T Consensus       373 ~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       373 VINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             HHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            9999999999999999999998774 999988766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10504 putative transporter; Provisional

Probab=99.14  E-value=1.6e-09  Score=117.23  Aligned_cols=156  Identities=15%  Similarity=0.019  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      +...+...++..+.+.....+.|.|++..+|.+..+.+++.....++..++.++.|++.|| +|||+++..+..+..++.
T Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~  341 (471)
T PRK10504        263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLALVS  341 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHH
Confidence            4445555666666655555667778877799999999999999999999999999999999 699999998888777776


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      .++.+...                    ..+...+....++.|++.+...+...++..+..|+       +.++.++++.
T Consensus       342 ~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~  394 (471)
T PRK10504        342 LLFMLVAL--------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD-------NLASSGNSLL  394 (471)
T ss_pred             HHHHhccc--------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-------HhccchHHHH
Confidence            66555330                    01233344556777888888888888999998887       6699999999


Q ss_pred             HHHHhhHHHHHHHHHHhhhccccc
Q 039943          188 YVSVLASSMVAVTCIVYIQDNLGW  211 (581)
Q Consensus       188 ~~~~~~g~~~~p~~~~~i~~~~g~  211 (581)
                      +....+|..+|+.++|.+.+..|+
T Consensus       395 ~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        395 SMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999988776655

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.13  E-value=1.4e-09  Score=104.15  Aligned_cols=156  Identities=12%  Similarity=0.076  Sum_probs=125.4

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHH
Q 039943           22 KGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCI  101 (581)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~  101 (581)
                      +.....+|.+....++..++.+=+...-+.++++++|+|+..++.+.+.....+++..++.|.++|| .||+-..+.+.+
T Consensus       260 ~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~a~  338 (459)
T KOG4686|consen  260 NTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVASAC  338 (459)
T ss_pred             cccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHHHH
Confidence            3444557888888888888888788888999999999999999999999999999999999999999 599977766654


Q ss_pred             -HHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhh
Q 039943          102 -TYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGAL  180 (581)
Q Consensus       102 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r  180 (581)
                       +..++..++.++.                         +.=+.+..++|+.........+..++...|+       ++.
T Consensus       339 ~~tl~~H~~l~Ft~-------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE-------~qL  386 (459)
T KOG4686|consen  339 ILTLLGHSGLFFTF-------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPE-------EQL  386 (459)
T ss_pred             HHHHHHhhhHHhhh-------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCH-------HHh
Confidence             4555666666654                         1124556667777666555566667777777       679


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhhhcccc
Q 039943          181 QSYFSWYYVSVLASSMVAVTCIVYIQDNLG  210 (581)
Q Consensus       181 ~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g  210 (581)
                      |++++..+...|+|-++.|++.|.+.++-|
T Consensus       387 GTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  387 GTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             cchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence            999999999999999999999999998755

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.13  E-value=8.2e-10  Score=119.60  Aligned_cols=172  Identities=8%  Similarity=0.013  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchh-----hHH--HHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYP-----MIG--FGCI  101 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~-----~~~--~~~~  101 (581)
                      +.+.+..++.....+++..++|.|+.+++|++..+++.+.+++.++..++.+++|+++|| +|||+     ...  +..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~~~  333 (476)
T PLN00028        255 WILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIVQT  333 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHHHH
Confidence            334444444444556677889999988899999999999999999999999999999999 68762     222  2222


Q ss_pred             HHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhh
Q 039943          102 TYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQ  181 (581)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~  181 (581)
                      +..+..++.....                       +........++.+++.+...+...+++.+..|        +.|+
T Consensus       334 l~~i~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~g  382 (476)
T PLN00028        334 LGGVFCIWLGRAN-----------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR--------RSLG  382 (476)
T ss_pred             HHHHHHHHhcccc-----------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh--------hhch
Confidence            2222222222222                       33444444555666555555556666666543        4588


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcC
Q 039943          182 SYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLAS  233 (581)
Q Consensus       182 ~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~  233 (581)
                      ...++.+.+.++|+.++|.+.+ ..+..+|+..|++.+++.+++.++.++.+
T Consensus       383 ~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        383 VISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             hhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            8999887766777777765543 22335799999998888877776665543

>TIGR00896 CynX cyanate transporter

Probab=99.13  E-value=1.4e-09  Score=113.00  Aligned_cols=152  Identities=12%  Similarity=0.044  Sum_probs=117.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc-CchhhHHHHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCV-GRYPMIGFGCITYLL  105 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~-Grr~~~~~~~~~~~~  105 (581)
                      ..+.+.+..++....++++..++|.|++ +.|++..+.+.+.+++.++..++.++.|+++|| + +||+.+.++.++.++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~  275 (355)
T TIGR00896       198 LAWQVTVFFGLQSGLYYSLIGWLPAILI-SHGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQLV  275 (355)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHH
Confidence            3444455555667777888889999997 479999999999999999999999999999999 7 566677777777777


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +.+.+.+..                       +.... ...++.|++.|...|...+.+.+..+++      ++++...+
T Consensus       276 ~~~~~~~~~-----------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~~~g~~~~  325 (355)
T TIGR00896       276 GLCGLLFAP-----------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQA------AQAAALSA  325 (355)
T ss_pred             HHHHHHHhh-----------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCH------HHHHHHHH
Confidence            777666654                       11111 1356789999998888777776655442      45788888


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhcccc
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLG  210 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g  210 (581)
                      +.+...++|..++|.+.|++.++.|
T Consensus       326 ~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       326 MAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888888999999999999998775

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.13  E-value=2e-09  Score=114.82  Aligned_cols=146  Identities=14%  Similarity=0.114  Sum_probs=108.4

Q ss_pred             HhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 039943           42 SMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQP  121 (581)
Q Consensus        42 ~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (581)
                      .+.+..++|.|+++ .|++..+.+.+.+...++..++.++.|+++|| +|||+++..+.++..+.........       
T Consensus       247 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~-------  317 (426)
T PRK12307        247 NWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIP-------  317 (426)
T ss_pred             HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHc-------
Confidence            34466788888875 69999999999999999999999999999999 7999999988877666554443322       


Q ss_pred             CcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHH
Q 039943          122 PACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTC  201 (581)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~  201 (581)
                                    +.....+....+..+++..+..+..+.++.|.+|+       +.|+++.++.+...++|+.++|.+
T Consensus       318 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~~~~~gp~~  376 (426)
T PRK12307        318 --------------QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPL-------EVRGLGTGLIYNLAATSGTFNSMA  376 (426)
T ss_pred             --------------cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcH-------HHHhhhhhHHHHHHhHHHHHHHHH
Confidence                          00122222222223333334446677888999998       679999999999999999999999


Q ss_pred             HHhhhccccchhhhHH
Q 039943          202 IVYIQDNLGWKVGFGV  217 (581)
Q Consensus       202 ~~~i~~~~g~~~~f~~  217 (581)
                      .|++.+.+|+....++
T Consensus       377 ~g~l~~~~g~~~~~~~  392 (426)
T PRK12307        377 ATWLGITMGLGAALTF  392 (426)
T ss_pred             HHHHHHcccHHHHHHH
Confidence            9999998887654333

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.12  E-value=5.6e-10  Score=116.23  Aligned_cols=161  Identities=14%  Similarity=0.157  Sum_probs=117.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH--HH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCIT--YL  104 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~--~~  104 (581)
                      .++.+.+..++......++..+++.|+.+.+|++..+.+.+.+.+.++..++.++.|+++||..+||+........  ..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~  296 (379)
T TIGR00881       217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII  296 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            3455556666667777778889999999999999999999999999999999999999999832334333222111  11


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      ++........                     ..+....+...++.|+...+..+....+..|.+|+       +.|+++.
T Consensus       297 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~  348 (379)
T TIGR00881       297 VSLLVYWLNP---------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPK-------KAAGTAA  348 (379)
T ss_pred             HHHHHHhcCc---------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc-------chhHHHH
Confidence            1222221111                     11334455556667766556566667788999988       6799999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhhccccchhhh
Q 039943          185 SWYYVSVLASSMVAVTCIVYIQDNLGWKVGF  215 (581)
Q Consensus       185 ~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f  215 (581)
                      ++.+...++|..++|.+.|++.+..||++.|
T Consensus       349 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       349 GFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            9999999999999999999999999998765

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.12  E-value=1.5e-09  Score=114.68  Aligned_cols=169  Identities=8%  Similarity=0.014  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhc---CCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEY---NMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      +...+..++....+.....+.+.|+.+.+   +.+....+.+.++..+...++.+..|++.|| +|||+.+.++.++.++
T Consensus       218 ~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l  296 (396)
T TIGR00882       218 WMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSV  296 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHH
Confidence            33333333444444445556777877655   5566677888888888999999999999999 7999999999888888


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +..+...+.                       +.+.++...++.|++..........+..+..++       +.+++..+
T Consensus       297 ~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~at~~~  346 (396)
T TIGR00882       297 RIIGSSFAT-----------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDV-------RLSATIYL  346 (396)
T ss_pred             HHHHHHhcC-----------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------ceEEEeeh
Confidence            777766655                       566677788888888766555556666666665       44666665


Q ss_pred             H-HHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHH
Q 039943          186 W-YYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALS  228 (581)
Q Consensus       186 ~-~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~  228 (581)
                      . ++....+|..++|+++|++.+..||+.+|.+.+++.++..+.
T Consensus       347 ~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       347 IGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            5 557789999999999999999999999999988776655444

>TIGR01272 gluP glucose/galactose transporter

Probab=99.12  E-value=1.1e-08  Score=104.20  Aligned_cols=85  Identities=11%  Similarity=-0.099  Sum_probs=70.6

Q ss_pred             chhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhcc-------
Q 039943          136 WSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDN-------  208 (581)
Q Consensus       136 ~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~-------  208 (581)
                      ..++..++++.++.|.|.+..++....++++..++       +++.+..++...+..+|..++|++++.+...       
T Consensus         7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~-------~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~   79 (310)
T TIGR01272         7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPI-------ETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSM   79 (310)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCc-------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhh
Confidence            34788999999999999999999999999999887       5688999999999999999999999977631       


Q ss_pred             ---------ccchhhhHHHHHHHHHHHH
Q 039943          209 ---------LGWKVGFGVPAVISLLSAL  227 (581)
Q Consensus       209 ---------~g~~~~f~~~~~~~~i~~~  227 (581)
                               .+|+++|++.+.+.++..+
T Consensus        80 ~~~~~~~~~~~~~~~yl~ia~~~~~~~i  107 (310)
T TIGR01272        80 QVATANAEAAKVHTPYLLLAGALAVLAI  107 (310)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                     4688888865555444333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.11  E-value=2.4e-08  Score=109.22  Aligned_cols=197  Identities=16%  Similarity=0.275  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHH
Q 039943           33 ANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWL  112 (581)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~  112 (581)
                      +..+...+.. +.+.....-+.+.|+++.++.|++.+.+-++..+...+..+.+-| .-|-|.+-++.++++++.+++++
T Consensus       104 ~~~~~q~l~~-~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~lgsll~al  181 (735)
T KOG3626|consen  104 LAAFAQGLYV-GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGLGSLLFAL  181 (735)
T ss_pred             HHHHHHHhhh-hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHHHHHHHhC
Confidence            3334444444 777888888999999999999999999999999999999999999 57889999999999999999887


Q ss_pred             hhhcccC-----------CCCc--------c---ccc-cccccc-----ccch-hHHHHHHHHHHHHHhccccchhhhhh
Q 039943          113 TTILSQA-----------QPPA--------C---DQL-RSDCES-----ATWS-QLMLLYSALGLMSLGGGGIRSSSLAF  163 (581)
Q Consensus       113 ~~~~~~~-----------~~~~--------~---~~~-~~~~~~-----~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~  163 (581)
                      -.....-           ...+        +   ++. +.+.++     .++. .+.+++.+.++.|+|....++.-.+|
T Consensus       182 PHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisY  261 (735)
T KOG3626|consen  182 PHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISY  261 (735)
T ss_pred             hHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcc
Confidence            5322220           0011        0   111 111111     2222 34478889999999999999999999


Q ss_pred             hhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhcc---c----------------cchhhhHHHHHHHHH
Q 039943          164 GAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDN---L----------------GWKVGFGVPAVISLL  224 (581)
Q Consensus       164 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~---~----------------g~~~~f~~~~~~~~i  224 (581)
                      +=|...+       +.-...+++.+....+|.++|.+++++....   +                .|...|++++.+.++
T Consensus       262 iDDnvk~-------~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~  334 (735)
T KOG3626|consen  262 IDDNVKK-------KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF  334 (735)
T ss_pred             ccccccc-------cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence            9888776       4578888999999999999999998886421   1                166677777777777


Q ss_pred             HHHHHHhcCCcccc
Q 039943          225 SALSFFLASPFYVQ  238 (581)
Q Consensus       225 ~~~~~~~~~~~~~~  238 (581)
                      ..+.++++++..++
T Consensus       335 ~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  335 SAVPLFFFPKELPK  348 (735)
T ss_pred             HHHHHHhCcccCcc
Confidence            77776666555443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.11  E-value=9.5e-10  Score=117.63  Aligned_cols=163  Identities=15%  Similarity=0.091  Sum_probs=123.3

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      |.++...+..++.....+......+.|.+..++ +..+.+++..+..++..++.++.|+++|| +|||+++..+.++.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence            344555556666666666555555555555555 56667788888889999999999999999 7999999999888888


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +.+...+..                      .+.+.+++..++.|++.+...+...++++|..+..+.....+.++..++
T Consensus       300 ~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  357 (437)
T TIGR00792       300 GYLIFFFAG----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYS  357 (437)
T ss_pred             HHHHHHHcc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHH
Confidence            777665542                      1455666777888999999999999999998764321111156899999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhccccch
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLGWK  212 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g~~  212 (581)
                      +.+....+|..+++.+.|++.+..||.
T Consensus       358 ~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       358 VRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999998877764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.11  E-value=3.4e-09  Score=114.97  Aligned_cols=171  Identities=13%  Similarity=0.093  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVV  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  108 (581)
                      ..+++..++.++....+...+|.+..+.+|.+....|++.+++.++..++.++.+++.+| +++++++..+.++++++.+
T Consensus       221 ~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~  299 (524)
T PF05977_consen  221 RSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALL  299 (524)
T ss_pred             HHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHH
Confidence            333344444444444455667888888999999999999999999999999999999999 7999999999999998888


Q ss_pred             HHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHH
Q 039943          109 LLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYY  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (581)
                      .+++++                       +.+..++..++.|++.........+.+-+..|+       +.||+.+++++
T Consensus       300 ~lal~~-----------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~-------~~~GRv~si~~  349 (524)
T PF05977_consen  300 LLALSP-----------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPD-------WVRGRVFSIYQ  349 (524)
T ss_pred             HHhcch-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHhHHHHHHH
Confidence            888887                       777788888999999998888888888888888       78999999999


Q ss_pred             HHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 039943          189 VSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       189 ~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      +....+..+|..+.|.+.+..|-+..+.++++..+++.++..
T Consensus       350 ~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  350 MVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998888776665555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.10  E-value=5.8e-09  Score=113.00  Aligned_cols=154  Identities=8%  Similarity=0.051  Sum_probs=111.7

Q ss_pred             HHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccc
Q 039943           51 LYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSD  130 (581)
Q Consensus        51 ~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (581)
                      +++.++.|++..+..+......+...++.+++|+++|| +|||++++.+.++.+++.++++......             
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~~-------------  360 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQ-------------  360 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhcC-------------
Confidence            34445789988888888888888999999999999999 7999999999999888887776543100             


Q ss_pred             cccccchhHHHHHHHHHHHHHhccc-cchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHH------
Q 039943          131 CESATWSQLMLLYSALGLMSLGGGG-IRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIV------  203 (581)
Q Consensus       131 ~~~~~~~~~~~~~~~~~l~g~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~------  203 (581)
                           .... ......++.+++.+. ..|...++++|.+|+       +.|+++.++.+...++|..+++.+.+      
T Consensus       361 -----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~  427 (479)
T PRK10077        361 -----APGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPN-------AIRGKALAIAVAAQWIANYFVSWTFPMMDKNS  427 (479)
T ss_pred             -----cccH-HHHHHHHHHHHHHhccccchhHHHhHhhCCh-------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence                 0011 222333444444433 347788999999998       67999999999988888888865554      


Q ss_pred             hhhccccchhhhHHHHHHHHHHHHHHHh
Q 039943          204 YIQDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       204 ~i~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      ++.+..+|++.|++.++..+++.+..+.
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (479)
T PRK10077        428 WLVAHFHNGFSYWIYGCMGVLAALFMWK  455 (479)
T ss_pred             chhhhccCccHHHHHHHHHHHHHHHHHh
Confidence            4446788888888877766655554443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.10  E-value=3.3e-09  Score=111.80  Aligned_cols=175  Identities=15%  Similarity=0.051  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHH-HHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTA-ATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG  106 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~-~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~  106 (581)
                      ++..+...++...+......+.++|+.+ .|++.++.+++..+... ...++.+++|++.|| +|+|+++..+.++.++.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHH
Confidence            4444445555556666666778888864 79999999999888764 666778999999999 79999998877665333


Q ss_pred             HHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHH
Q 039943          107 VVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSW  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (581)
                      ........+...                 ..+....+....+.+++.+...+...+...+..+++      +.+++.+++
T Consensus       288 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~g~~~~~  344 (390)
T TIGR02718       288 ALLWFAQAAFWL-----------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDG------DQAGTDVTA  344 (390)
T ss_pred             HHHHHHHHHccc-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc------cchHHHHHH
Confidence            322221110000                 002333344445556667777777777777766542      358999999


Q ss_pred             HHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHH
Q 039943          187 YYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSAL  227 (581)
Q Consensus       187 ~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~  227 (581)
                      .+...++|..++|.++|++.+..||+..|.+.+++.+++.+
T Consensus       345 ~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       345 VQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999887776665543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.08  E-value=6.5e-09  Score=109.79  Aligned_cols=166  Identities=11%  Similarity=0.026  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH-
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG-  106 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~-  106 (581)
                      ++...+..++.....++...+.++++.+++|++..+.+.+...+.++..++.++.|++.|| .+| +.+..+.++..+. 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~-~~l~~~~~~~~~~~  295 (394)
T PRK10213        218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVK-LALAGAPLVLAVSA  295 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cch-hHHHHHHHHHHHHH
Confidence            4444344444445555666666555556889999999999999999999999999999999 554 4444444443333 


Q ss_pred             HHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHH
Q 039943          107 VVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSW  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (581)
                      .++....+                       +.+.+....++.|++.+...+...+++.+..|+        ++++..+.
T Consensus       296 ~~l~~~~~-----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  344 (394)
T PRK10213        296 LVLTLWGS-----------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLAD--------QAEKAGSI  344 (394)
T ss_pred             HHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc--------cHHHHHHH
Confidence            33333333                       456677788889999999999999888888764        24455666


Q ss_pred             HHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHH
Q 039943          187 YYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSA  226 (581)
Q Consensus       187 ~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~  226 (581)
                      .....++|..+||.++|++.+..|++..+...+++.++..
T Consensus       345 ~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        345 QVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence            6677789999999999999999999888888776554443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.08  E-value=6.7e-09  Score=110.08  Aligned_cols=171  Identities=12%  Similarity=-0.047  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      ++...+...+.....+....+.|.|+.+++|++..+.++......++..++.++.|+++|| +|+|+.+.++.++..++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~  295 (406)
T PRK15402        217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGL  295 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence            3444444444455555566677888888899999999988888888889999999999999 699999999988888777


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      .+..+.....                  ..+...++.+.++.|++.+...+......... ++       ++|++..+.+
T Consensus       296 ~~~~~~~~~~------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~-------~~~g~~~~~~  349 (406)
T PRK15402        296 LLAALATVIS------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SD-------VSKGTVSAAM  349 (406)
T ss_pred             HHHHHHHHcc------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cc-------ccccHHHHHH
Confidence            7766643110                  11455677788889999888777666554332 22       3589999999


Q ss_pred             HHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHH
Q 039943          188 YVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLS  225 (581)
Q Consensus       188 ~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~  225 (581)
                      +....+|..+|+.+.+++.+..++....+..++..++.
T Consensus       350 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        350 GMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            99999999999999999988877665555544444433

>PRK10054 putative transporter; Provisional

Probab=99.07  E-value=2e-09  Score=113.72  Aligned_cols=173  Identities=14%  Similarity=0.088  Sum_probs=128.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhh--hcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCG--EYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      .++...+..++..+.+.....+.+.|+..  +.+.+....+++..+..+......++.|++.|| +++|+.+..++++..
T Consensus       207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~  285 (395)
T PRK10054        207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCFV  285 (395)
T ss_pred             eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHHH
Confidence            33444444555555544444566666643  445666677788888877777778899999999 699999999988888


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      ++.....+..+                      +.+.+++..++.|+|.+...|...+++.+..|+       +.|++.+
T Consensus       286 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~-------~~~~~~~  336 (395)
T PRK10054        286 IGLVGFIFSGN----------------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPP-------GMKASYF  336 (395)
T ss_pred             HHHHHHHHcch----------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCc-------ccceehH
Confidence            88776665420                      455566778899999988888888899998887       5578888


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 039943          185 SWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       185 ~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      +..+ ...+|..+||.++|++.|+.|....|++.+....++++...
T Consensus       337 ~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        337 SAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             hHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            7654 56689999999999999999988888877666665555544

>TIGR00895 2A0115 benzoate transport

Probab=99.06  E-value=3e-09  Score=111.64  Aligned_cols=145  Identities=12%  Similarity=-0.023  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVV  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  108 (581)
                      +.+.+..++....++.+..++| ++.+++|++..+.+++.+...++..++.++.|+++|| +|||+.+....+..+....
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~  330 (398)
T TIGR00895       253 VLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLLLGAVFAVL  330 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHH
Confidence            3344445556666677777777 6667899999999999999999999999999999999 6999555444433333333


Q ss_pred             HHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHH
Q 039943          109 LLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYY  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (581)
                      +.....                       +...++...++.|++.+...+...+++.|.+|+       +.|++++++.+
T Consensus       331 ~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~  380 (398)
T TIGR00895       331 VGSTLF-----------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT-------AIRATGVGWAI  380 (398)
T ss_pred             HHHHhh-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH-------HHHHHHHHHHH
Confidence            322222                       455567778889999999999999999999998       77999999999


Q ss_pred             HHHhhHHHHHHHHHHhh
Q 039943          189 VSVLASSMVAVTCIVYI  205 (581)
Q Consensus       189 ~~~~~g~~~~p~~~~~i  205 (581)
                      ....+|..+||.++|++
T Consensus       381 ~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       381 GIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHhHHhc
Confidence            99999999999999876

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.04  E-value=3.7e-09  Score=114.64  Aligned_cols=154  Identities=13%  Similarity=0.061  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      ++...+..++..+.+++...++|.|+++.+|++..+++++.....++..++.++.|++.|| +|||+++.++.++..++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~~~  335 (485)
T TIGR00711       257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAVGF  335 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHH
Confidence            4445566667777788888899999999999999999999999999999999999999999 799999999988888877


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      .++.+...                   ...+.+.+....++.|++.+...+.......+..|+       ++|+++.++.
T Consensus       336 ~~~~~~~~-------------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~  389 (485)
T TIGR00711       336 YWRAFTFT-------------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP-------HKIARGSSLS  389 (485)
T ss_pred             HHHhccCC-------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHhHHHHHH
Confidence            77663210                   011445566668889999998887777777788887       6799999999


Q ss_pred             HHHHhhHHHHHHHHHHhhhcc
Q 039943          188 YVSVLASSMVAVTCIVYIQDN  208 (581)
Q Consensus       188 ~~~~~~g~~~~p~~~~~i~~~  208 (581)
                      +...++|..+|+.+.+.+.++
T Consensus       390 ~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       390 NFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.03  E-value=4.4e-09  Score=114.58  Aligned_cols=152  Identities=11%  Similarity=-0.018  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      +....+..++..+.+++...++|.|+++.+|+++.+++.......++..++.++.|++.|| +|+|+.+..+.++..++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~~~  339 (495)
T PRK14995        261 ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSALSF  339 (495)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHH
Confidence            3444455666667777888889999999999999999999999999999999999999999 799999998888888777


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      .++.....                    ..+.+......++.|+|.|...+.....+.+..|+       ++++.+.+++
T Consensus       340 ~~l~~~~~--------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~-------~~~g~~~~~~  392 (495)
T PRK14995        340 YGLAMTDF--------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPP-------EKAAAAGAIE  392 (495)
T ss_pred             HHHHHhcC--------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCH-------HhcchHHHHH
Confidence            66654330                    11344456678889999999888888888888887       6699999999


Q ss_pred             HHHHhhHHHHHHHHHHhhhc
Q 039943          188 YVSVLASSMVAVTCIVYIQD  207 (581)
Q Consensus       188 ~~~~~~g~~~~p~~~~~i~~  207 (581)
                      +...++|..+|+.+.|.+.+
T Consensus       393 ~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        393 TMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998854

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.03  E-value=4.9e-09  Score=114.41  Aligned_cols=166  Identities=17%  Similarity=0.082  Sum_probs=109.8

Q ss_pred             HHHHHHHHhhhhhHHHHHhhhhcCCcchhhHH------------HHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH
Q 039943           35 EAFERMASMGLMPNMILYLCGEYNMETTAGTN------------VLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCIT  102 (581)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~------------i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (581)
                      .++..+.+|++..++|.+++ +.|++..+++.            ...+..++..++.++.++++|| +|||++++++.++
T Consensus       297 ~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~~  374 (502)
T TIGR00887       297 WFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFFI  374 (502)
T ss_pred             HHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHH
Confidence            34456678888888888885 67887553321            1233444556688899999999 7999999988877


Q ss_pred             HHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhH
Q 039943          103 YLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS  182 (581)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (581)
                      ..++..+..+..+..                  + +...+....+...++..+..+....+.+|.+|.       +.|++
T Consensus       375 ~~~~~~~l~~~~~~~------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~-------~~R~~  428 (502)
T TIGR00887       375 LTVLFFVLGFAYNHL------------------S-THGFLAIYVLAQFFANFGPNATTFIVPGEVFPT-------RYRST  428 (502)
T ss_pred             HHHHHHHHHHHHHhc------------------c-hhHHHHHHHHHHHHHhcCCCchhhhhhhccCch-------hHHHH
Confidence            777666555432000                  0 111111111112222233445677788999999       77999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhhcc----------ccchhhhHHHHHHHHHHHHH
Q 039943          183 YFSWYYVSVLASSMVAVTCIVYIQDN----------LGWKVGFGVPAVISLLSALS  228 (581)
Q Consensus       183 ~~~~~~~~~~~g~~~~p~~~~~i~~~----------~g~~~~f~~~~~~~~i~~~~  228 (581)
                      +.++.+....+|+.++|.+.+++.+.          .++...|++.++..+++.+.
T Consensus       429 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~  484 (502)
T TIGR00887       429 AHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF  484 (502)
T ss_pred             HHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998773          34455667666665555443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.01  E-value=8.2e-09  Score=111.52  Aligned_cols=177  Identities=13%  Similarity=0.002  Sum_probs=122.2

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhH--------H
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMI--------G   97 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~--------~   97 (581)
                      +.++...+..++....++.+..++|.|+.+.+|++..+.++..++..++..++.+++|+++|| +++|+..        .
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~~~~  339 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAARKIF  339 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHHH
Confidence            345677777888888888999999999999999999999999999999999999999999999 5654321        1


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccc
Q 039943           98 FGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSK  177 (581)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~  177 (581)
                      .+......+..+..... .                   ..+....++...+.+.+.+...+.......|..|        
T Consensus       340 ~~~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------  391 (465)
T TIGR00894       340 NGIGGLGPGIFAYALPY-L-------------------SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP--------  391 (465)
T ss_pred             HHHHHHHHHHHHHHHHH-c-------------------CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh--------
Confidence            11111111111111111 0                   0023333444455555555555555555555554        


Q ss_pred             hhhhHHHHHHHHHHhhHHHHHHHHHHhhhccc---cchhhhHHHHHHHHHHHHHHHh
Q 039943          178 GALQSYFSWYYVSVLASSMVAVTCIVYIQDNL---GWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       178 ~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~---g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      +.++...++.+...++|+.++|.+.|++.+..   +|...|.+.++..+++.+....
T Consensus       392 ~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       392 RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            35899999999999999999999999987643   4888888888777776655443

>PRK10133 L-fucose transporter; Provisional

Probab=99.01  E-value=9.1e-09  Score=110.19  Aligned_cols=166  Identities=11%  Similarity=0.025  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHh-hhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYL-CGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      +...+..++.....++...+.+.|+ ++.+|+++.++++....+.+++.++.+++|++.|| +|||+++..+.++.+++.
T Consensus       261 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~~  339 (438)
T PRK10133        261 RWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALC  339 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHH
Confidence            3344445555566666677888886 56789999999999999999999999999999999 799999998877776665


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      .+..+.+                       +. ..+....+.|++.+...|...+...+.+|++        .+.+.++.
T Consensus       340 ~~~~~~~-----------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~--------~~~as~l~  387 (438)
T PRK10133        340 LISAFAG-----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD--------TKYGSSFI  387 (438)
T ss_pred             HHHHHcC-----------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh--------hccchhHH
Confidence            5554443                       21 1245567899999999999999999987752        23344444


Q ss_pred             HHHHhhHHHHHHHHHHhhhcccc-chhhhHHHHHHHHHHHHH
Q 039943          188 YVSVLASSMVAVTCIVYIQDNLG-WKVGFGVPAVISLLSALS  228 (581)
Q Consensus       188 ~~~~~~g~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~i~~~~  228 (581)
                      .. ..+|+.++|.+.|++.+..| -+..|+++.+..+.....
T Consensus       388 ~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        388 VM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             hH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            32 44678888889999999887 788888776655544433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.01  E-value=1.7e-08  Score=106.99  Aligned_cols=152  Identities=13%  Similarity=0.101  Sum_probs=104.8

Q ss_pred             hHHHHHhhhhcCCcchhhHHHHHHHH-HHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCccc
Q 039943           47 PNMILYLCGEYNMETTAGTNVLLIWT-AATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACD  125 (581)
Q Consensus        47 ~~l~~yl~~~~~~s~~~~~~i~~~~~-~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (581)
                      .+.++|+.+++|++.++.+++..... ++..++.+++|++.|| +|||+.+..+.++..+..+.+......+        
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~~l~~~~~~~~~--------  300 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVSNLGYWVLAVTP--------  300 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence            44556777789999999999886654 4678999999999999 7999998877776665544332211000        


Q ss_pred             ccccccccccchhHHHHHHHH----HHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHH
Q 039943          126 QLRSDCESATWSQLMLLYSAL----GLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTC  201 (581)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~----~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~  201 (581)
                                 .+.+.+++..    +..|++.+...+....++.+.+|.       +.+    +++....++|..+++.+
T Consensus       301 -----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~l~~~~~~~~  358 (402)
T PRK11902        301 -----------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSA-------TQY----ALLSALASVGRVYVGPT  358 (402)
T ss_pred             -----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-------HHH----HHHHHHHHHHHHHHHHH
Confidence                       0333344433    345566666677777777777765       223    44444456677666678


Q ss_pred             HHhhhccccchhhhHHHHHHHHHHHHHH
Q 039943          202 IVYIQDNLGWKVGFGVPAVISLLSALSF  229 (581)
Q Consensus       202 ~~~i~~~~g~~~~f~~~~~~~~i~~~~~  229 (581)
                      +|++.+..||+..|.+.+++.++++++.
T Consensus       359 ~G~l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        359 SGYLVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888777765554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.99  E-value=1e-08  Score=123.35  Aligned_cols=163  Identities=12%  Similarity=0.041  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcch-hhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETT-AGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG  106 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~-~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~  106 (581)
                      ++..++..++.....+.+..+++.|+.+.+|++.. +.+++.+...++..++.++.|+++|| +++++++.++.++.+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~  312 (1146)
T PRK08633        234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALS  312 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHH
Confidence            34444444455555566778889999999999999 99999999999999999999999999 69999999888888887


Q ss_pred             HHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHH
Q 039943          107 VVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSW  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (581)
                      .+++.+..                       +.+.+++..++.|++.+...+...+++.+..|+       +.|++++++
T Consensus       313 ~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~rg~~~~~  362 (1146)
T PRK08633        313 LFLLPTAP-----------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPE-------KELGKVLAA  362 (1146)
T ss_pred             HHHHHHhh-----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCc-------cchhhhhHH
Confidence            77777665                       566777888899999999888999999999888       669999999


Q ss_pred             HHHHHhhHHHHHHHHHHhhhc-cccchhhhHHHHHH
Q 039943          187 YYVSVLASSMVAVTCIVYIQD-NLGWKVGFGVPAVI  221 (581)
Q Consensus       187 ~~~~~~~g~~~~p~~~~~i~~-~~g~~~~f~~~~~~  221 (581)
                      .++..++|..+++.+++.+.. .+++...|++.+.+
T Consensus       363 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        363 NNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            999999999888877776643 23454555554443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.98  E-value=1.2e-08  Score=108.92  Aligned_cols=164  Identities=15%  Similarity=0.126  Sum_probs=133.9

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      |....+++..++..++........+.|.+..+|.+ ...+.+..+..++..++.++.++++|| +|+|+++..+.++.++
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHH
Confidence            44566667777777777766777777777777876 567788888999999999999999999 6999999999999999


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +.++..+..                     +.+.+.+++..++.|++.+...+...++++|..+..+....+++.+..++
T Consensus       303 ~~~~~~~~~---------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s  361 (428)
T PF13347_consen  303 GFLLLFFLG---------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS  361 (428)
T ss_pred             HHHHHHHHH---------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence            988888875                     12778899999999999999999999999999885443222255788888


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhccccch
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLGWK  212 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g~~  212 (581)
                      .......++.++++.+.+.+.+..|+.
T Consensus       362 ~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  362 VNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            999999999999999988886655544

>PRK09848 glucuronide transporter; Provisional

Probab=98.98  E-value=7.5e-09  Score=111.28  Aligned_cols=164  Identities=15%  Similarity=0.135  Sum_probs=123.7

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      |.+....+..++....++......+.|+++.+|.+....++......++..++.++.++++|| +|+|+++.++.++.++
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence            344555555666666666666667778887888877666655555567778899999999999 7999999999988888


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +.+++.+.+                     ..+.+.++...++.|+|.+...+...++.+|..|.++....+++++..++
T Consensus       307 ~~~~~~~~~---------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~  365 (448)
T PRK09848        307 GYLLFFWVS---------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYS  365 (448)
T ss_pred             HHHHHHHcC---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHH
Confidence            877766543                     12456677778889999999999999999998875432111135688889


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhccccc
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLGW  211 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g~  211 (581)
                      .++....+|.++|+.+.+.+.+..||
T Consensus       366 ~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        366 LFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999887665555

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.98  E-value=2.5e-08  Score=104.43  Aligned_cols=161  Identities=13%  Similarity=0.168  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      ++...+...+....++....+.|.|+++++|+++.+.+++.+...++..++.++.|++.|| +|||+.+..+..+..++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~  286 (385)
T TIGR00710       208 FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAVSA  286 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence            3334444444555566667777888888999999999999999999999999999999999 799999998888877777


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      .++.......                  ..+...++...++.|++.+...+.......|..|+        +|+++.++.
T Consensus       287 ~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~g~~~~~~  340 (385)
T TIGR00710       287 VLLEITAILG------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH--------VAGTASALF  340 (385)
T ss_pred             HHHHHHHHhc------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc--------cchHHHHHH
Confidence            6665543100                  01344556667788898888888888888887653        478888888


Q ss_pred             HHHHhh-HHHHHHHHHHhhhccccchhhhH
Q 039943          188 YVSVLA-SSMVAVTCIVYIQDNLGWKVGFG  216 (581)
Q Consensus       188 ~~~~~~-g~~~~p~~~~~i~~~~g~~~~f~  216 (581)
                      +..... |...+| +.+.+.+..+|...+.
T Consensus       341 ~~~~~~~g~i~~~-~~~~~~~~~~~~~~~~  369 (385)
T TIGR00710       341 GTLRLVLGAIVGY-LVSLIHGNTAWPMSLS  369 (385)
T ss_pred             HHHHHHHHHHHHH-HHHhccccChHHHHHH
Confidence            776654 555555 4555555445544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.97  E-value=1e-08  Score=104.58  Aligned_cols=171  Identities=17%  Similarity=0.208  Sum_probs=138.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~  106 (581)
                      .+...+++.++.+=+.-++......|-..++|++..+..++....++..+++++++|+|.|| +|-|+++.+++++..+.
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~  331 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIA  331 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHH
Confidence            55666666666666666777888889988999999999999999999999999999999999 79999999999988887


Q ss_pred             HHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHH
Q 039943          107 VVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSW  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (581)
                      .+..-+..                       ....+.+.-.+.|...|+.++..-++.++..|+       ++-++.+|+
T Consensus       332 ~~~~~~~~-----------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~-------~k~~~fFgl  381 (438)
T COG2270         332 ALYLIFLE-----------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPK-------GKEGRFFGL  381 (438)
T ss_pred             HHHHHHcc-----------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCC-------ccccceeeh
Confidence            76666654                       233344555678999999999999999999999       557889999


Q ss_pred             HHHHHhhHHHHHHHHHHhhhcccc-chhhhHHHHHHHHHHHHH
Q 039943          187 YYVSVLASSMVAVTCIVYIQDNLG-WKVGFGVPAVISLLSALS  228 (581)
Q Consensus       187 ~~~~~~~g~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~i~~~~  228 (581)
                      |......++.+||.+.+.+.+..| -|..+....+..++++++
T Consensus       382 yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~  424 (438)
T COG2270         382 YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL  424 (438)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence            999999999999999998877654 555555545555555444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.97  E-value=1.1e-08  Score=108.18  Aligned_cols=154  Identities=12%  Similarity=0.065  Sum_probs=113.5

Q ss_pred             hhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 039943           44 GLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPA  123 (581)
Q Consensus        44 ~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (581)
                      ....++|.|+++..+ ++.+.+++.++..++...+....+++.||.++.++.+..+.++..++..++..++         
T Consensus       226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~---------  295 (400)
T PRK11646        226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS---------  295 (400)
T ss_pred             HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence            345667888876555 7788888888877766655555566665425767777788878887777776665         


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHH
Q 039943          124 CDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIV  203 (581)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~  203 (581)
                                    +...+.+..++.+++.+...|...+++.|..|+       +.|++.+++++...++|..+||.++|
T Consensus       296 --------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~ig~~l~G  354 (400)
T PRK11646        296 --------------NLQQLFTLICLFYIGSIIAEPARETLSASLADA-------RARGSYMGFSRLGLALGGAIGYIGGG  354 (400)
T ss_pred             --------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCc-------ccchhhhhHHHHHHHHHHHhcccchH
Confidence                          455566667788888888889999999999988       56999999999999999999999999


Q ss_pred             hhhccc---c-chhhhHHHHHHHHHHHHH
Q 039943          204 YIQDNL---G-WKVGFGVPAVISLLSALS  228 (581)
Q Consensus       204 ~i~~~~---g-~~~~f~~~~~~~~i~~~~  228 (581)
                      ++.+..   + ....|.+.++..+++.+.
T Consensus       355 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        355 WLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            998764   2 244555544444444433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.97  E-value=7.4e-11  Score=128.27  Aligned_cols=165  Identities=13%  Similarity=0.201  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHH
Q 039943           33 ANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWL  112 (581)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~  112 (581)
                      +..++. ....+.+.....-++++|+++.+++|++.+.+-++..+..++..++++| ..|-|.+-++.+++++|.+++++
T Consensus        10 ~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~l   87 (539)
T PF03137_consen   10 LLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFAL   87 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhc
Confidence            334444 6677777777888999999999999999999999999999999999999 57778899999999999998887


Q ss_pred             hhhcccC-CC--------------Ccc-----cccc-------cccccccchhHHHHHHHHHHHHHhccccchhhhhhhh
Q 039943          113 TTILSQA-QP--------------PAC-----DQLR-------SDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGA  165 (581)
Q Consensus       113 ~~~~~~~-~~--------------~~~-----~~~~-------~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~  165 (581)
                      -.....- ..              ..|     ++..       .+.+......+..++++.++.|+|....++...+|+=
T Consensus        88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD  167 (539)
T PF03137_consen   88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID  167 (539)
T ss_dssp             ----------------------------------------------------------------SSS-------------
T ss_pred             cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence            4422110 00              001     0000       0011112234678999999999999999999999999


Q ss_pred             hccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhh
Q 039943          166 EQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQ  206 (581)
Q Consensus       166 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~  206 (581)
                      |..++       +.-....|+++....+|.++|.++++...
T Consensus       168 Dnv~~-------~~splYiGi~~~~~~lGPa~Gf~lg~~~L  201 (539)
T PF03137_consen  168 DNVSK-------KNSPLYIGILYAMSILGPALGFLLGSFCL  201 (539)
T ss_dssp             -----------------------------------------
T ss_pred             ccccc-------ccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence            99888       55788899999999999999998887653

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.97  E-value=3.5e-08  Score=104.82  Aligned_cols=186  Identities=10%  Similarity=0.023  Sum_probs=125.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~  106 (581)
                      ..|.+.+..++..-.+.++..++|.|+++.+.  .........+..+...+..|++|+++|| +|+||++.++.+...++
T Consensus       253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i~  329 (462)
T PRK15034        253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAIF  329 (462)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHHH
Confidence            35666666666666666777789999887653  3333333455667888999999999999 79999999998877776


Q ss_pred             HHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcc-----------
Q 039943          107 VVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENK-----------  175 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~-----------  175 (581)
                      .....+..  +.               .+..++..+.+..+...++.|........++.+.||+.....           
T Consensus       330 ~~~~~l~l--p~---------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~  392 (462)
T PRK15034        330 SALLFLTL--PG---------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQA  392 (462)
T ss_pred             HHHHHHHh--cc---------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHH
Confidence            64433322  00               011246666666666666666667778888888887410000           


Q ss_pred             ---cchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccc-cchhhhHHHHHHHHHHHHHHHhc
Q 039943          176 ---SKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNL-GWKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       176 ---~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~-g~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                         ..++-+.+.|+......+|+.+-|.+.|...+.. ++...|+...+..+++..+.+..
T Consensus       393 ~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        393 QREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence               0024677888888888899999998878776664 57778888777766666555443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.94  E-value=1.3e-08  Score=122.10  Aligned_cols=185  Identities=10%  Similarity=-0.019  Sum_probs=132.8

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      |.++...+..++..+.++++..++|.|+++.+|.+..+.+++.+.+.+++.++.++.|+++|+ .++++.+..+.++..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHH
Confidence            345566666666667777788899999999999999999999999999999999999999998 5777776666666555


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +.+.+.+.....  ...+. +...-.......+.+.+++..++.|++.+...+...+++.+..|+       +.|+++++
T Consensus       304 ~~~~l~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~G~v~g  373 (1140)
T PRK06814        304 FGLDLAFASSSV--PAEPA-QLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANP-------AHRARVIA  373 (1140)
T ss_pred             HHHHHHhccccc--ccccc-cccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCc-------ccceeeeH
Confidence            554444320000  00000 000000000001456677888889999999999999999999998       66999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhc-cccchhhhHHHHHH
Q 039943          186 WYYVSVLASSMVAVTCIVYIQD-NLGWKVGFGVPAVI  221 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~-~~g~~~~f~~~~~~  221 (581)
                      ..+....+|..+++++++.+.+ ..++...|++.+++
T Consensus       374 ~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        374 ANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            9999999999999999998863 45666666655443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.94  E-value=4.9e-08  Score=103.12  Aligned_cols=159  Identities=13%  Similarity=-0.035  Sum_probs=119.8

Q ss_pred             HHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhccc
Q 039943           39 RMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQ  118 (581)
Q Consensus        39 ~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~  118 (581)
                      ..........++.|+++.+|.++.+.|++.+...++..++.+..+++.|| .++|+++..++. ..+..+...+.+    
T Consensus       218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~-~~~~~~~~~~~~----  291 (393)
T PRK11195        218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGIL-MGLVVLLMALQH----  291 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHH-HHHHHHHHHHHh----
Confidence            34444555667788888899999999999999999999999999999999 699998887753 333333334433    


Q ss_pred             CCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHH
Q 039943          119 AQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVA  198 (581)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  198 (581)
                                         +.+......++.|++.+...+...+.+.+..|+ +     ..++++.++.+...++|..++
T Consensus       292 -------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~-~-----~~~g~~~a~~~~~~~~~~~~~  346 (393)
T PRK11195        292 -------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHV-L-----VGAGHSIAVQNFNENLAMLLM  346 (393)
T ss_pred             -------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcc-c-----ccchhHHHHHhHHHHHHHHHH
Confidence                               455566777788999988888888887775333 2     237999999999999999999


Q ss_pred             HHHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 039943          199 VTCIVYIQDNLGWKVGFGVPAVISLLSALSF  229 (581)
Q Consensus       199 p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~  229 (581)
                      ..+.+.+ +..|-++.+++.++..++.+...
T Consensus       347 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  376 (393)
T PRK11195        347 LGLYSLL-VKLGVPVVAVIVGFGLLVALAMA  376 (393)
T ss_pred             HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHH
Confidence            9888865 55777777777666555554443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.93  E-value=1.1e-08  Score=110.58  Aligned_cols=176  Identities=15%  Similarity=0.101  Sum_probs=149.6

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccC--chhhHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVG--RYPMIGFGCITY  103 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~G--rr~~~~~~~~~~  103 (581)
                      +..+.+.+...+..++++....+++.|.. ..+++.++++.++++..+...++.++.|+++|+ ..  ++.+..++++..
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHH
Confidence            34566667777788888888888888887 899999999999999999999999999999999 46  445555666666


Q ss_pred             HHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          104 LLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                      .++...++++.                       +++.++..-++.|+..|...+.....+.|..+.       ++...+
T Consensus       376 gl~~~~~p~~~-----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~-------~~l~~a  425 (509)
T KOG2504|consen  376 GLARLFLPFAT-----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGL-------EKLSNA  425 (509)
T ss_pred             HHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh-------hhcchH
Confidence            66777777777                       778888899999999999999888899999988       669999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhhcccc-chhhhHHHHHHHHHHHHHHHhcC
Q 039943          184 FSWYYVSVLASSMVAVTCIVYIQDNLG-WKVGFGVPAVISLLSALSFFLAS  233 (581)
Q Consensus       184 ~~~~~~~~~~g~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~i~~~~~~~~~  233 (581)
                      +|+......++..+||++.|++.|..| |...|+.+++..+++...+++..
T Consensus       426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  426 YGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            999999999999999999999998877 99999999998888876655544

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.91  E-value=4.7e-08  Score=102.15  Aligned_cols=166  Identities=13%  Similarity=-0.017  Sum_probs=115.0

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCch---hhHHH-HHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRY---PMIGF-GCI  101 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr---~~~~~-~~~  101 (581)
                      |.++.+.+..++....+|++..|+|.|++ +.|++.. .+....+..+...   +..++++|| +.||   +.... ..+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~-~~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAGL---IGVAVIPDR-VARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHHH---HHHHHhhHH-hhhhhhHHHHHHHHHH
Confidence            45677778888889999999999999996 4678764 5555555554444   445788888 5543   33332 333


Q ss_pred             HHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhh
Q 039943          102 TYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQ  181 (581)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~  181 (581)
                      +.++......+..                       +....++...+.+++.....+..+++.+|.+|+       +.|+
T Consensus       266 ~~a~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~rg  315 (368)
T TIGR00903       266 LIAAFFLALAFEL-----------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK-------ELHG  315 (368)
T ss_pred             HHHHHHHHHHHcc-----------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch-------hhcC
Confidence            3333333333332                       223334455666777777778888999999999       6799


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 039943          182 SYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSF  229 (581)
Q Consensus       182 ~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~  229 (581)
                      ++.++.+...++|+.++|.+.+.+..  |.+..|.+.++..+++.+..
T Consensus       316 t~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       316 KAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887764  66667777777666665554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.91  E-value=1.5e-06  Score=87.59  Aligned_cols=149  Identities=16%  Similarity=0.115  Sum_probs=106.0

Q ss_pred             hhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccc
Q 039943           55 GEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESA  134 (581)
Q Consensus        55 ~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (581)
                      +++|++..|.+.+...-....++..++.|.++|| +|||+..+..++++.++.+.- ..+                    
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k-~~~--------------------  119 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTK-HSS--------------------  119 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHH-hcc--------------------
Confidence            5799999999999999999999999999999999 699999999988888776532 223                    


Q ss_pred             cchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHH-HHHhhHHHHHHHHHHhhhccccc--
Q 039943          135 TWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYY-VSVLASSMVAVTCIVYIQDNLGW--  211 (581)
Q Consensus       135 ~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~p~~~~~i~~~~g~--  211 (581)
                         ++..++++|++-|++.....++..+.......+.+-++  +..+..++... ....+-++++.+++-++.+..+.  
T Consensus       120 ---~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~--~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~  194 (354)
T PF05631_consen  120 ---NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ--EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGP  194 (354)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCC
Confidence               68899999999999999999988877554443322110  23344443322 12223334444445555555544  


Q ss_pred             hhhhHHHHHHHHHHHHHHH
Q 039943          212 KVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       212 ~~~f~~~~~~~~i~~~~~~  230 (581)
                      ..+|..+.+..+++.+...
T Consensus       195 vaPF~~a~~~l~~~~~~I~  213 (354)
T PF05631_consen  195 VAPFDAAIVLLAVAAVLIL  213 (354)
T ss_pred             cchHHHHHHHHHHHHHHHH
Confidence            7788888887777665544

>TIGR00901 2A0125 AmpG-related permease

Probab=98.89  E-value=2.4e-08  Score=103.84  Aligned_cols=144  Identities=11%  Similarity=0.047  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHH-HHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWT-AATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG  106 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~-~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~  106 (581)
                      ++.+.+..++..+.++....+++.|+++ +|++.++.+.+..+.. ++..++.+++|++.|| +|||+.+..+.++..++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~  288 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQALT  288 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHH
Confidence            5555566666778888888999999986 9999999998887766 5678999999999999 79999998888887776


Q ss_pred             HHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHH
Q 039943          107 VVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSW  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (581)
                      ..+..+..+....            .+-+..+.+.++...++.+++.+...+...+++.|.+|+       ++|++.+++
T Consensus       289 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~  349 (356)
T TIGR00901       289 NAGFVWLASNGHH------------DGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP-------KFGATQMAL  349 (356)
T ss_pred             HHHHHHHHhcCcc------------cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-------CccHHHHHH
Confidence            6555443200000            000001446677778888999999999999999999998       679999999


Q ss_pred             HHHHHh
Q 039943          187 YYVSVL  192 (581)
Q Consensus       187 ~~~~~~  192 (581)
                      ++...+
T Consensus       350 ~~~~~~  355 (356)
T TIGR00901       350 LSSLSA  355 (356)
T ss_pred             HHHHHh
Confidence            877654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.89  E-value=1.1e-07  Score=95.18  Aligned_cols=169  Identities=14%  Similarity=0.110  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      -|.+.+-.-+.++.+|.++.|+|.++. +.|+|..++|++.+..++......+..-.+++|.-.+|+........+.+|.
T Consensus       210 aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~  288 (395)
T COG2807         210 AWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL  288 (395)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            466666666789999999999999997 6799999999999999999999999999999975567888888888999999


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      ..+.+.+.                      +..  +...+++|+|.|+..|...+++.+..++.      ++-++..++.
T Consensus       289 ~G~~~~P~----------------------~~~--~lw~~llG~G~G~~F~laL~li~~rs~~a------~~Aa~LSgma  338 (395)
T COG2807         289 VGLLLAPG----------------------QLP--ILWALLLGLGQGGAFPLALTLILLRSSDA------AIAAALSGMA  338 (395)
T ss_pred             HHHHHhhh----------------------hHH--HHHHHHHhCccchHHHHHHHHHHhhcCCh------HHHHHHHHHh
Confidence            98888761                      111  12258999999999999999999987663      3466666666


Q ss_pred             HHHHhhHHHHHHHHHHhhhccc-cchhhhHHHHHHHHHHHH
Q 039943          188 YVSVLASSMVAVTCIVYIQDNL-GWKVGFGVPAVISLLSAL  227 (581)
Q Consensus       188 ~~~~~~g~~~~p~~~~~i~~~~-g~~~~f~~~~~~~~i~~~  227 (581)
                      +....+=+++||.+.|++.|.. +|+..+..-+.+.++..+
T Consensus       339 Qg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i  379 (395)
T COG2807         339 QGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI  379 (395)
T ss_pred             hhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            6666777888999999999875 588776665555444433

>TIGR00898 2A0119 cation transport protein

Probab=98.87  E-value=2.7e-08  Score=108.67  Aligned_cols=133  Identities=13%  Similarity=0.054  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHH
Q 039943           68 LLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALG  147 (581)
Q Consensus        68 ~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (581)
                      .....+...++.++.+++.|| +|||+++.++.++.+++.+++.+.++                     ...+..+...+
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~---------------------~~~~~~~~~~~  418 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPV---------------------DLYFLRTALAV  418 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCC---------------------CchHHHHHHHH
Confidence            345566777888999999999 79999999998888887777766541                     01233444445


Q ss_pred             HHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHH
Q 039943          148 LMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSAL  227 (581)
Q Consensus       148 l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~  227 (581)
                      +.+++.+...+...++.+|.+|+       +.|+++.++.+....+|+.++|.+.+ +. ..++..++.+.++..+++.+
T Consensus       419 ~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~  489 (505)
T TIGR00898       419 LGKFGITSAFQMVYLYTAELYPT-------VVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGI  489 (505)
T ss_pred             HHHHHHHHHHHHHHHHhcccccH-------HHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHH
Confidence            56666667778888999999998       77999999999999999999999988 43 35566677777666665555


Q ss_pred             HHHh
Q 039943          228 SFFL  231 (581)
Q Consensus       228 ~~~~  231 (581)
                      ...+
T Consensus       490 ~~~~  493 (505)
T TIGR00898       490 LTLF  493 (505)
T ss_pred             HHHc
Confidence            4443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.86  E-value=1.5e-08  Score=104.51  Aligned_cols=141  Identities=16%  Similarity=0.126  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHhhhhcCCc-chhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHH
Q 039943           31 IIANEAFERMASMGLMPNMILYLCGEYNME-TTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVL  109 (581)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~  109 (581)
                      .+...+...+.++....++|.|+.+++|++ ..+.+.+.++..+...++.++.|+++|| +|+|+..........++.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~  289 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILGALG  289 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHH
Confidence            445555555677778899999989999999 7999999999999999999999999999 79988888887777777666


Q ss_pred             HHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHH
Q 039943          110 LWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYV  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  189 (581)
                      +.+...                    ..+....+...++.|++.+...+...+++.|..|+       ++|+++.++.+.
T Consensus       290 ~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~  342 (352)
T PF07690_consen  290 LLLLPF--------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPP-------EYRGTAFGLFNS  342 (352)
T ss_dssp             HCCSHH--------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT-------CHHHHHHHHHHH
T ss_pred             HHHHHH--------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHH
Confidence            665541                    11456666678889999999999999999999988       679999999999


Q ss_pred             HHhhHHHHHH
Q 039943          190 SVLASSMVAV  199 (581)
Q Consensus       190 ~~~~g~~~~p  199 (581)
                      ..++|..+||
T Consensus       343 ~~~~~~~igP  352 (352)
T PF07690_consen  343 IGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHCC
Confidence            9999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.86  E-value=7.3e-08  Score=101.58  Aligned_cols=141  Identities=7%  Similarity=-0.011  Sum_probs=91.8

Q ss_pred             hhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 039943           44 GLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPA  123 (581)
Q Consensus        44 ~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (581)
                      ....+.+.|+++++|++..+.+.+.....+...++.++.|++.|| +|||+++.++.++..++.+.+.+..         
T Consensus       221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~---------  290 (392)
T PRK10473        221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALSP---------  290 (392)
T ss_pred             HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            344556777888899999999999999999999999999999999 7999999999988888887777665         


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHH
Q 039943          124 CDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIV  203 (581)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~  203 (581)
                                    +....+....+.+.|.+...+..  ...+..|.++      +-+.+.+    ...++..+++.+++
T Consensus       291 --------------~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~------~~g~~~~----~~~~~~~~g~~~~~  344 (392)
T PRK10473        291 --------------SHAVSLFGITLICAGFSVGFGVA--MSQALGPFSL------RAGVASS----TLGIAQVCGSSLWI  344 (392)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHhHHH--HHHHhccCcc------cccHHHH----HHHHHHHHHHHHHH
Confidence                          22233333333333333333222  2233344321      1222332    33456666677777


Q ss_pred             hhhccccchhhhHHHHH
Q 039943          204 YIQDNLGWKVGFGVPAV  220 (581)
Q Consensus       204 ~i~~~~g~~~~f~~~~~  220 (581)
                      ++.+..|+.....+.+.
T Consensus       345 ~l~~~~g~~~~~~~~~~  361 (392)
T PRK10473        345 WLAAVLGISAWNMLIGI  361 (392)
T ss_pred             HHHHHhccchhHHHHHH
Confidence            77776676654444433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.79  E-value=9.4e-08  Score=103.52  Aligned_cols=166  Identities=17%  Similarity=0.069  Sum_probs=116.4

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      |.++.++...++..+..+......+.|.+...+ +....+++..+..++..++.++.++++|| +|+|+++.++.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence            445555556666666655555555544443333 55666677777778889999999999999 7999999988887776


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +.+...+..-.                  .+.+.+.+++.-++.|++.+...+...++++|..+..+....++..+..++
T Consensus       309 ~~~~~~~~~~~------------------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s  370 (473)
T PRK10429        309 SCGVLLLMGLA------------------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYS  370 (473)
T ss_pred             HHHHHHHHhcc------------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHH
Confidence            66554432100                  011455666777888999999999999999999764321111145666888


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhccccc
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLGW  211 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g~  211 (581)
                      ...+...+|.++++.+.|++.+..||
T Consensus       371 ~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        371 VQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88889999999999999998776665

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.75  E-value=1.3e-07  Score=94.32  Aligned_cols=170  Identities=12%  Similarity=0.043  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhh--cCCc----chhhH-------------HHHHHHHHHHHHHHHHHHHhhcc
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGE--YNME----TTAGT-------------NVLLIWTAATNFLPIIGAFLADS   88 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s----~~~~~-------------~i~~~~~~~~~i~~~~~G~laDr   88 (581)
                      .+.+....|.+.+.+||++-......+.+  ++..    +++..             .=..+..++-+-|.++.+++.||
T Consensus       328 tlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iver  407 (528)
T KOG0253|consen  328 TLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVER  407 (528)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHH
Confidence            34555667778999999776554443321  1110    11111             11345566777889999999999


Q ss_pred             ccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhcc
Q 039943           89 CVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQL  168 (581)
Q Consensus        89 ~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~  168 (581)
                       +|||+++..+++++.+..+++..+.+-                  + ..-.+++.+|+....+.    .+.+.|..|.+
T Consensus       408 -lGRKkTMal~l~~f~iflfll~~c~~r------------------n-~~tvllf~arafisg~f----qvaYvYtPEVy  463 (528)
T KOG0253|consen  408 -LGRKKTMALSLILFGIFLFLLTTCKTR------------------N-AYTVLLFTARAFISGAF----QVAYVYTPEVY  463 (528)
T ss_pred             -hcchhHHHHHHHHHHHHHHHHHHhcCc------------------c-hhHHHHHHHHHHHhchh----eEEEEecCccc
Confidence             799999999999999988877776510                  0 12345667777765443    45788999999


Q ss_pred             CCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 039943          169 EKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       169 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      |.       ..|+.+.|....+..+|+++.|.++  +....+-..+..+...+.+++.+...
T Consensus       464 PT-------avRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavc  516 (528)
T KOG0253|consen  464 PT-------AVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVC  516 (528)
T ss_pred             ch-------hhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHhe
Confidence            99       7799999999999999999999887  33333333444555555555554433

>PRK09669 putative symporter YagG; Provisional

Probab=98.74  E-value=1.8e-07  Score=100.50  Aligned_cols=129  Identities=10%  Similarity=0.098  Sum_probs=96.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHH
Q 039943           62 TAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLML  141 (581)
Q Consensus        62 ~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (581)
                      ...+.+.....+...++.++.++++|| +|+|+.+..+.++.+++.....+..                     +.+.+.
T Consensus       264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~  321 (444)
T PRK09669        264 DLATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILSALIFFIP---------------------PSNVWL  321 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhC---------------------cchHHH
Confidence            334455566667778889999999999 7999999988776665443333322                     115666


Q ss_pred             HHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccch
Q 039943          142 LYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWK  212 (581)
Q Consensus       142 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~  212 (581)
                      +++..++.|++.+...+...++++|..+..+....++..+..++....+..+|.++|+.++|++.+..||.
T Consensus       322 ~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        322 IFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            77778899999999999999999998874332111144567788888899999999999999988777763

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.71  E-value=7.3e-07  Score=93.29  Aligned_cols=147  Identities=11%  Similarity=0.014  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVV  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  108 (581)
                      +...+..++.....+....+.+.++.+.+|++..+.+++..+..++..++.++.|++.|| +|||+++..+..+..+..+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~  275 (377)
T PRK11102        197 LGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIMGI  275 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHH
Confidence            333344444444555556667778888899999999999999999999999999999999 7999999988876544333


Q ss_pred             HHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHH
Q 039943          109 LLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYY  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (581)
                      ........                   +.+.+.+.++..+.+.+.+...+.....+.|..|        +.+++..+..+
T Consensus       276 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~  328 (377)
T PRK11102        276 WLVVSALL-------------------DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP--------HMAGTASSLAG  328 (377)
T ss_pred             HHHHHHHH-------------------hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc--------ccchHHHHHHH
Confidence            22222100                   0133444444445555555555566666666655        24777777765


Q ss_pred             HH-HhhHHHHHHHHHH
Q 039943          189 VS-VLASSMVAVTCIV  203 (581)
Q Consensus       189 ~~-~~~g~~~~p~~~~  203 (581)
                      .. ..+|..+++++++
T Consensus       329 ~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        329 TLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            43 3466777765544

>PRK11043 putative transporter; Provisional

Probab=98.70  E-value=9.7e-07  Score=93.34  Aligned_cols=149  Identities=13%  Similarity=0.061  Sum_probs=106.4

Q ss_pred             HHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhc
Q 039943           37 FERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTIL  116 (581)
Q Consensus        37 ~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~  116 (581)
                      +....++....+.|.|++ ++|++..+.++......++..++.++.+++.|| +|+|+++....+...++.+.+.+....
T Consensus       214 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (401)
T PRK11043        214 ACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLASLL  291 (401)
T ss_pred             HHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334445556677787775 589999999998888888889999999999999 799998776666655554433332200


Q ss_pred             ccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHH
Q 039943          117 SQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSM  196 (581)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  196 (581)
                      .                  ..+...++....+.|++.+...|...+...|..|+        .++++.++++.....++.
T Consensus       292 ~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~g~~~~~~~~~~~  345 (401)
T PRK11043        292 S------------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ--------ATGKAAALQNTLQLGLCF  345 (401)
T ss_pred             c------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc--------cChHHHHHHHHHHHHHHH
Confidence            0                  01344455566778888888888888877776653        489999999888788888


Q ss_pred             HHHHHHHhhhccccchh
Q 039943          197 VAVTCIVYIQDNLGWKV  213 (581)
Q Consensus       197 ~~p~~~~~i~~~~g~~~  213 (581)
                      +++.+.|.+.+......
T Consensus       346 ~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        346 LASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHccCCChhHH
Confidence            88888888876443333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.69  E-value=6.8e-07  Score=94.13  Aligned_cols=178  Identities=11%  Similarity=0.001  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      ++..++..++.....-....+...|+++.-|.+....+.+.++..++-.+.....+++-.| +|-|+++.++.+.+++=.
T Consensus       209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~  287 (400)
T PF03825_consen  209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRW  287 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence            3444445555555555566778889875444788888888888888888888999999999 799999999999999877


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      .+.+..++.                  .+......+.+..++|+..|....+...++.+..|+       +.|+++-+++
T Consensus       288 ~l~a~~~~~------------------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~-------~~~at~Q~l~  342 (400)
T PF03825_consen  288 LLYAYFSDP------------------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP-------ELRATAQGLY  342 (400)
T ss_pred             HHHHHhcCC------------------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc-------cchHHHHHHH
Confidence            777776310                  001123344456679999999999999999999999       6799999988


Q ss_pred             HHH-HhhHHHHHHHHHHhhhccccchh------hhHHHHHHHHHHHHHHHh
Q 039943          188 YVS-VLASSMVAVTCIVYIQDNLGWKV------GFGVPAVISLLSALSFFL  231 (581)
Q Consensus       188 ~~~-~~~g~~~~p~~~~~i~~~~g~~~------~f~~~~~~~~i~~~~~~~  231 (581)
                      ... ..+|..+|..++|++.|++|-+.      .+.+++++.++..+.+.+
T Consensus       343 ~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~  393 (400)
T PF03825_consen  343 SALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI  393 (400)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            865 57999999999999999876443      444555544444444443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.65  E-value=7.7e-07  Score=94.48  Aligned_cols=164  Identities=10%  Similarity=-0.055  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhh-cCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGE-YNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG  106 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~  106 (581)
                      ++...+..++......+..++++.|+.+. .+.+...++...+.+.....++.+++|+++|| +++|+++.++.++.++.
T Consensus       234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~~  312 (410)
T TIGR00885       234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMAL  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHH
Confidence            33334444444444445668888898642 24455555666777778889999999999999 79999998888887777


Q ss_pred             HHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHH
Q 039943          107 VVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSW  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (581)
                      .++..+.+                       +.. .....++.|+..+..+|...++..+..++       +.......+
T Consensus       313 ~ll~~~~~-----------------------~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~-------~~~~~s~~l  361 (410)
T TIGR00885       313 CLGSIFAG-----------------------GHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQ-------DTKYGAAGL  361 (410)
T ss_pred             HHHHHHcC-----------------------ChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hhhhhHHHH
Confidence            77777654                       222 24556778888888889999999998876       222222222


Q ss_pred             HHHHHhhHHHHHHHHHHhhhccc------cchhhhHHHHHHHHHH
Q 039943          187 YYVSVLASSMVAVTCIVYIQDNL------GWKVGFGVPAVISLLS  225 (581)
Q Consensus       187 ~~~~~~~g~~~~p~~~~~i~~~~------g~~~~f~~~~~~~~i~  225 (581)
                       . ...+|+++.|.+.|++.|..      +.+..|+++.++.+..
T Consensus       362 -~-~~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~  404 (410)
T TIGR00885       362 -V-MAIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI  404 (410)
T ss_pred             -H-HHHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence             2 23499999999999999953      5788888877665443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.62  E-value=1.9e-06  Score=91.44  Aligned_cols=186  Identities=13%  Similarity=0.052  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      +...+...+...+..--...+....+-++-|++..++.+++........++.+++.++.|| +|||++++.+..+..+..
T Consensus       271 ~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~~~  349 (485)
T KOG0569|consen  271 LLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAVAL  349 (485)
T ss_pred             HHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHH
Confidence            4444445555555543334444444445789999999999999999999999999999999 799999999999888877


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccc-cchhhhhhhhhccCCCCCcccchhhhHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGG-IRSSSLAFGAEQLEKGDENKSKGALQSYFSW  186 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (581)
                      +++.........              .+++-....+++.++..+..+. ..|..+-+.+|++|+       +.|..+.++
T Consensus       350 ~~~~~~~~l~~~--------------~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~-------~~R~aa~s~  408 (485)
T KOG0569|consen  350 LLMSIALFLSNS--------------FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQ-------SARSAAQSV  408 (485)
T ss_pred             HHHHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCc-------cchHHHHHH
Confidence            776665422110              0000011223333333333322 257888999999999       558888888


Q ss_pred             HHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcc
Q 039943          187 YYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFY  236 (581)
Q Consensus       187 ~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~  236 (581)
                      ......+...+-......+.+..|- ..|.+..+...+..+..+...|+.
T Consensus       409 ~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  409 ATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence            7777766666666566666666664 566666666555555555544543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.62  E-value=2e-07  Score=97.02  Aligned_cols=139  Identities=9%  Similarity=0.055  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      .+...+..++.....+++..+.+.|+++.+|++..+++.+.++..+...++.+++|+++|| +|||+.+..+..+...+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~  305 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAMGA  305 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHHHH
Confidence            3444444455555666778889999999999999999999999999999999999999999 799998888877766666


Q ss_pred             HHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                      .++.+...                   ++.+...+.....+.+++.|...+...++++|.+|.        ++++..++.
T Consensus       306 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------~~g~~~g~~  358 (366)
T TIGR00886       306 FLVVLGLV-------------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR--------ATGAVSGLV  358 (366)
T ss_pred             HHHHhcCC-------------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhchh--------hcccHHHHH
Confidence            65554330                   000344444455555566666666777778887763        589999988


Q ss_pred             HHHHhhH
Q 039943          188 YVSVLAS  194 (581)
Q Consensus       188 ~~~~~~g  194 (581)
                      +...++|
T Consensus       359 ~~~~~~g  365 (366)
T TIGR00886       359 GAIGNLG  365 (366)
T ss_pred             HHhccCC
Confidence            7776665

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.61  E-value=1.3e-06  Score=90.86  Aligned_cols=175  Identities=9%  Similarity=0.062  Sum_probs=134.5

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcC---CcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYN---METTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCIT  102 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (581)
                      |.+|.+.+........++..-...+.|.+..++   .++...|.+.++-.+.-++...+..++.+| +|.|+.++++.++
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i  298 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVI  298 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHH
Confidence            344544444333334444444456677765433   455667888888888999999999999999 7999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhH
Q 039943          103 YLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS  182 (581)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (581)
                      +.+=.+++++++                       +++.+.....+.|+-.+........++++.+|+       +..++
T Consensus       299 ~~iRi~~~~~~~-----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~-------rlsAt  348 (412)
T PF01306_consen  299 MAIRIIGSGFAT-----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDK-------RLSAT  348 (412)
T ss_dssp             HHHHHHHHHT-------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G-------GGHHH
T ss_pred             HHHHHHHHhhhc-----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hHHHH
Confidence            999999999988                       788899999999999999999999999999998       66777


Q ss_pred             HHHHH-HHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh
Q 039943          183 YFSWY-YVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       183 ~~~~~-~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      .+.+. ..+..+|..+.+.++|++.|+.|++..|++.+.+.+...++..+
T Consensus       349 ~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f  398 (412)
T PF01306_consen  349 LYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF  398 (412)
T ss_dssp             HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence            88775 46778999999999999999999999998877766555444443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.59  E-value=3.3e-07  Score=95.80  Aligned_cols=125  Identities=16%  Similarity=0.162  Sum_probs=94.7

Q ss_pred             hHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhh
Q 039943          394 PIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMI  473 (581)
Q Consensus       394 ~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  473 (581)
                      ++.+|+|+-       +++..|+...++=++.+...                      .+.|..++.-++.++..++...
T Consensus       428 klI~kiGHv-------~v~~lgLa~~~~Rf~~~S~L----------------------~n~W~vLPieilqgit~aliWa  478 (618)
T KOG3762|consen  428 KLIEKIGHV-------NVMYLGLACNVGRFLYYSYL----------------------QNPWMVLPIEILQGITHALIWA  478 (618)
T ss_pred             HHHHHhccc-------ceeeehhhHHHHHHHHHHHh----------------------cCchheeeHHHHHHHHHHHHHH
Confidence            466676555       47778887777777766654                      3677788888999999999999


Q ss_pred             hhheeecccCCchhhHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHH
Q 039943          474 GQIEFYYSELPRSMSSIASALHG-LGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIY  552 (581)
Q Consensus       474 ~~~~~~~~~~P~~~rg~~~g~~~-~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~  552 (581)
                      +..+|+...+|++++.+++++.. ....+|-.+|+.+.+.+....                +....|.++++.|++.++.
T Consensus       479 a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f----------------g~~ttf~~~giAcl~~l~~  542 (618)
T KOG3762|consen  479 AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF----------------GARTTFRIFGIACLVTLAL  542 (618)
T ss_pred             HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee----------------hhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999874 445578888888888776543                2356788888888877777


Q ss_pred             Hhhhhcccccc
Q 039943          553 FLACCKAYGPC  563 (581)
Q Consensus       553 ~~~~~~~~~~~  563 (581)
                      +..+-+..+++
T Consensus       543 ~~~iq~~l~~~  553 (618)
T KOG3762|consen  543 FISIQLLLKRR  553 (618)
T ss_pred             HHHhhhhhccc
Confidence            66665544443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.55  E-value=1.7e-06  Score=90.99  Aligned_cols=161  Identities=16%  Similarity=0.101  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVV  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  108 (581)
                      ...++..++...++....+.+..|.+..+|.++.+..+.......+..++.++..++++| +|+|+++.++.++.+++.+
T Consensus       239 ~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~  317 (467)
T COG2211         239 LLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYL  317 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHH
Confidence            344445555555555555666667777788888888888888888888889999999999 7999999999999999999


Q ss_pred             HHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHH
Q 039943          109 LLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYY  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (581)
                      +..+.+                     ..+..++++..++.++|.+...+..+++++|..+-+|-...++.-|..++...
T Consensus       318 ~~~f~~---------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~t  376 (467)
T COG2211         318 LLYFTP---------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMT  376 (467)
T ss_pred             HHHhhc---------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHH
Confidence            888876                     22688888999999999999999999999998765443333245566667777


Q ss_pred             HHHhhHHHHHHHHHHhhhccccc
Q 039943          189 VSVLASSMVAVTCIVYIQDNLGW  211 (581)
Q Consensus       189 ~~~~~g~~~~p~~~~~i~~~~g~  211 (581)
                      ...-+|.+++..+.|++....||
T Consensus       377 F~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         377 FFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC
Confidence            77778888888888887655443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.54  E-value=1.2e-06  Score=93.77  Aligned_cols=176  Identities=13%  Similarity=0.073  Sum_probs=124.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCc--------hhhHH-
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGR--------YPMIG-   97 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Gr--------r~~~~-   97 (581)
                      .+|.+.+..++.+++++.+..++|.|+.+.+|++..+.|+..++-.+.+.+..+++|.++|| .-+        ||++- 
T Consensus       259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~-l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDR-LTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhhccCchHhHHHHHHh
Confidence            35788899999999999999999999999999999999999999999999999999999999 444        22222 


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccc
Q 039943           98 FGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSK  177 (581)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~  177 (581)
                      ++....++..+.+++.+.                 .........+.++..+.|+..+++.    .-..|..|        
T Consensus       338 i~~~~~ai~l~~l~~~~~-----------------~~~~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~ap--------  388 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFTSD-----------------EHRLLAVILLTIAIGLSGFNISGFY----KNHQDIAP--------  388 (466)
T ss_pred             HHHHHHHHHHHeeeecCC-----------------CcchHHHHHHHHHHHHcccchhhhH----hhhhhccc--------
Confidence            222223333333333330                 0011233334444444444444432    22222222        


Q ss_pred             hhhhHHHHHHHHHHhhHHHHHHHHHHhhhcc---ccchhhhHHHHHHHHHHHHHHHhc
Q 039943          178 GALQSYFSWYYVSVLASSMVAVTCIVYIQDN---LGWKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       178 ~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~---~g~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                      +.-+..+++.+...++.+.++|.+.+.+..+   ..|+++|++.+++.+++-+++.+.
T Consensus       389 q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  389 QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            4678889999999999999999999998843   379999999999888877665544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.52  E-value=4.4e-06  Score=88.10  Aligned_cols=138  Identities=10%  Similarity=0.023  Sum_probs=98.1

Q ss_pred             hhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCccc
Q 039943           46 MPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACD  125 (581)
Q Consensus        46 ~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (581)
                      ....+.|+++.+|++..+.+++.....++..++.++.+++.|| ++++...  +.....++.+........         
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~---------  294 (394)
T PRK11652        227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMWQ--SVICCLLAGLLMWIPGWF---------  294 (394)
T ss_pred             HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHh---------
Confidence            3445667877799999999999888888888999999999999 5733322  222222222222111100         


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhh
Q 039943          126 QLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYI  205 (581)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i  205 (581)
                               ...+.+.++...++.+++.+...|...++..|.+|+        .++...++.+...++|..+++.+++++
T Consensus       295 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~lg~~~~~~~~~~~  357 (394)
T PRK11652        295 ---------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY--------LAGTAGALLGGLQNIGSGLAALLSAML  357 (394)
T ss_pred             ---------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                     011445677778889999999999999998888764        478888888888899999999999988


Q ss_pred             hccccch
Q 039943          206 QDNLGWK  212 (581)
Q Consensus       206 ~~~~g~~  212 (581)
                      .+...+.
T Consensus       358 ~~~~~~~  364 (394)
T PRK11652        358 PQTGQFS  364 (394)
T ss_pred             cCCchHH
Confidence            6654443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.52  E-value=2.6e-06  Score=92.24  Aligned_cols=183  Identities=8%  Similarity=0.028  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchh----hHHHHHHHHHHHHHHHHHHHH----hhccccCchhhH--HHH
Q 039943           30 FIIANEAFERMASMGLMPNMILYLCGEYNMETTA----GTNVLLIWTAATNFLPIIGAF----LADSCVGRYPMI--GFG   99 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~----~~~i~~~~~~~~~i~~~~~G~----laDr~~Grr~~~--~~~   99 (581)
                      .+++...+..+.+.-..+.++.|.++..+.+...    .+++.++..+...+.+++..+    +.||..+.+...  .+|
T Consensus       276 ~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G  355 (475)
T TIGR00924       276 VLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLG  355 (475)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence            3344444555555556666777776654443222    667778787877777777554    455411223333  678


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchh
Q 039943          100 CITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGA  179 (581)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  179 (581)
                      .++.+++...+++......              .....+.+++....++.++|+....|...+++.+..|+       +.
T Consensus       356 ~~l~~~~~~~~~~~~~~~~--------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~-------~~  414 (475)
T TIGR00924       356 MLFCGASFLTFAASIWFAD--------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ-------RL  414 (475)
T ss_pred             HHHHHHHHHHHHHHHhhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------HH
Confidence            8888888777766431110              00123788899999999999999999999999999998       77


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcC
Q 039943          180 LQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLAS  233 (581)
Q Consensus       180 r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~  233 (581)
                      |++.++++.....+|..+++.+.....+..+|...|...++..++..+++.+..
T Consensus       415 ~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       415 MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998888777777888888777776665555554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=0.00013  Score=76.95  Aligned_cols=102  Identities=11%  Similarity=0.103  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHH
Q 039943           68 LLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALG  147 (581)
Q Consensus        68 ~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (581)
                      ..+......++.++++.+.|+ +|.|..+.++...+..-.+...+.                        |-+.++.+-.
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~~------------------------N~y~~yfssa  110 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLFP------------------------NSYYLYFSSA  110 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHhc------------------------chHHHHHHHH
Confidence            667777888899999999999 799999999998888766665554                        4577888999


Q ss_pred             HHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHH
Q 039943          148 LMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTC  201 (581)
Q Consensus       148 l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~  201 (581)
                      +.|+|.+..+...-.+++|..++       +.+.+-.++.......+..+|.+.
T Consensus       111 llG~Gaallw~GqG~ylt~~st~-------~tie~Nisi~Wai~~~~li~Ggi~  157 (461)
T KOG3098|consen  111 LLGFGAALLWTGQGGYLTSNSTR-------ETIERNISIFWAIGQSSLIIGGII  157 (461)
T ss_pred             HhhhhHHheecccceehhhcCCh-------hhHHHHHHHHHHHHHHHHHhhhHh
Confidence            99999999999999999998877       567777777666666666665443

>PRK11462 putative transporter; Provisional

Probab=98.43  E-value=1.6e-05  Score=85.81  Aligned_cols=128  Identities=6%  Similarity=0.014  Sum_probs=84.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHH
Q 039943           62 TAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLML  141 (581)
Q Consensus        62 ~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (581)
                      ...+.+..++.++..++.+++++++|| +|+|+++..+.++.++..++..+.+                     ..+...
T Consensus       263 ~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~  320 (460)
T PRK11462        263 EVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVISLAMFFVP---------------------MQASIT  320 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhc---------------------hhHHHH
Confidence            344567778888889999999999999 7999988766554444333333322                     012223


Q ss_pred             HHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccc
Q 039943          142 LYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGW  211 (581)
Q Consensus       142 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~  211 (581)
                      +++..++.|++.+...+...++++|..+..+-...++.-+..++.......+|.++++.++|++.+..||
T Consensus       321 ~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        321 MFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3444566787777777777888888766322111103334556777778889999999998887765555

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.38  E-value=1.5e-05  Score=81.89  Aligned_cols=165  Identities=17%  Similarity=0.204  Sum_probs=132.1

Q ss_pred             HHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcc
Q 039943           38 ERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILS  117 (581)
Q Consensus        38 ~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~  117 (581)
                      ..++++.--..+=||-.+.||++..|...++..+..+..++....|++..|..+++++..+++.+.+++..+..++..  
T Consensus       220 ~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~--  297 (403)
T PF03209_consen  220 GTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP--  297 (403)
T ss_pred             HHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh--
Confidence            344444333555677788999999999999999999999999999999885478899999999998888888777762  


Q ss_pred             cCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHH
Q 039943          118 QAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMV  197 (581)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  197 (581)
                                        ..+.+.+..+.+++|++.|.+.....+...|...+       ++-+...+.....+.+...+
T Consensus       298 ------------------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~-------~~aG~~mG~WGaaQA~A~Gl  352 (403)
T PF03209_consen  298 ------------------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSA-------GRAGLFMGAWGAAQAIARGL  352 (403)
T ss_pred             ------------------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC-------cchhHHHHHHHHHHHHHHHH
Confidence                              22678899999999999999999999999998877       45788899998888888888


Q ss_pred             HHHHHHhhhcc----------ccchhhhHHHHHHHHHHHHHH
Q 039943          198 AVTCIVYIQDN----------LGWKVGFGVPAVISLLSALSF  229 (581)
Q Consensus       198 ~p~~~~~i~~~----------~g~~~~f~~~~~~~~i~~~~~  229 (581)
                      |-.++|.+.|-          .+|..+|.+-++.+++++.+.
T Consensus       353 g~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  353 GTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            88888876542          346677777777666665543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.38  E-value=1.7e-05  Score=78.79  Aligned_cols=147  Identities=20%  Similarity=0.260  Sum_probs=112.5

Q ss_pred             hHHHHHhhhhcCCcc--hhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcc
Q 039943           47 PNMILYLCGEYNMET--TAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPAC  124 (581)
Q Consensus        47 ~~l~~yl~~~~~~s~--~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (581)
                      ...+.+. .+++.+.  .+.+++.+.+.+...++.++.|+++|| +|||+.+..+.....++.+++.+..+         
T Consensus        23 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~---------   91 (338)
T COG0477          23 PALPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPN---------   91 (338)
T ss_pred             HHHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence            3344333 4555555  578999999999999999999999999 59998888888776666666666651         


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHH-HHhhHHHHHHHHHH
Q 039943          125 DQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYV-SVLASSMVAVTCIV  203 (581)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~p~~~~  203 (581)
                                  .+...++..|...|++.+...+...+++.|.+|+ .     +.|+...+.... ...+|..++|.+++
T Consensus        92 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T COG0477          92 ------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A-----TERGLAVGLVTLGAGALGLALGPLLAG  153 (338)
T ss_pred             ------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h-----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        2578889999999999999999999999999886 2     358888888777 57788888887777


Q ss_pred             hhhcc--ccchhhhHHHHHHH
Q 039943          204 YIQDN--LGWKVGFGVPAVIS  222 (581)
Q Consensus       204 ~i~~~--~g~~~~f~~~~~~~  222 (581)
                      .+...  .+|++.|.+.....
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         154 LLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHhcchHHHHHHHHHHH
Confidence            66543  57888665555443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.37  E-value=1.5e-05  Score=84.67  Aligned_cols=170  Identities=16%  Similarity=0.046  Sum_probs=109.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~  106 (581)
                      .++...+..++....++......|.++++.+|++..+.++.......+..++..+.+++.++ .++++.......+..++
T Consensus       219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~ig  297 (413)
T PRK15403        219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKD-PTEPRFIWRAVPIQLVG  297 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHH
Confidence            45555555566666667777778899998899999999999888888888888888876654 24545443333344444


Q ss_pred             HHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHH
Q 039943          107 VVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSW  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (581)
                      ..++....-..                  ..+...++++.++.++|.+...|+.....-  .+..      ..++++.++
T Consensus       298 ~~l~~~~~~~~------------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~------~~~G~a~a~  351 (413)
T PRK15403        298 LALLIVGNLLW------------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNN------LPKGTVSAS  351 (413)
T ss_pred             HHHHHHHHHHc------------------cccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCC------CCCcHHHHH
Confidence            43333321000                  013334567888889998888888875332  2222      136777777


Q ss_pred             HHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHH
Q 039943          187 YYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLL  224 (581)
Q Consensus       187 ~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i  224 (581)
                      ++.....+..+++...+++.+. +-.+.|.+..++..+
T Consensus       352 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~  388 (413)
T PRK15403        352 LNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV  388 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence            7777777888888888888664 445666655554433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.33  E-value=9.5e-06  Score=71.10  Aligned_cols=120  Identities=18%  Similarity=0.298  Sum_probs=87.4

Q ss_pred             hHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhh
Q 039943          394 PIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMI  473 (581)
Q Consensus       394 ~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  473 (581)
                      ++.||+++|       +.+..+..+..++.+.....                      .+.+......++.+++.....+
T Consensus        20 ~~~d~~g~~-------~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~   70 (141)
T TIGR00880        20 LLTDRFGRK-------PVLLVGLFIFVLSTAMFALS----------------------SNITVLIIARFLQGFGAAFALV   70 (141)
T ss_pred             HHHhhcchh-------HHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHH
Confidence            355665544       45666666666665544332                      1445556667888888888888


Q ss_pred             hhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 039943          474 GQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYF  553 (581)
Q Consensus       474 ~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~  553 (581)
                      ....++.|..|++.|++..++.+....++..+++.+.+.+.+..      +          ++..|++.+.+.++..+..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~~  134 (141)
T TIGR00880        71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL------G----------WRAPFLFLAILALAAFILL  134 (141)
T ss_pred             hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc------c----------hHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999988776432      2          3567777777777777666


Q ss_pred             hhhhc
Q 039943          554 LACCK  558 (581)
Q Consensus       554 ~~~~~  558 (581)
                      +++.+
T Consensus       135 ~~~~~  139 (141)
T TIGR00880       135 AFLLP  139 (141)
T ss_pred             hhcCC
Confidence            65544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.32  E-value=1.7e-05  Score=77.36  Aligned_cols=133  Identities=14%  Similarity=0.068  Sum_probs=100.4

Q ss_pred             HHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccc
Q 039943           49 MILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLR  128 (581)
Q Consensus        49 l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (581)
                      ..+.+++.+|+|.+|...+-..-.++..++ ++.|.+.|+ +|.+.++.+|.+...+|..+++++-.-            
T Consensus        24 yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~~------------   89 (250)
T PF06813_consen   24 YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVSG------------   89 (250)
T ss_pred             hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhC------------
Confidence            345678899999999999999999999886 888999999 699999999999999999888887510            


Q ss_pred             cccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhc
Q 039943          129 SDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQD  207 (581)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~  207 (581)
                          .....+++.+++...+.|.+.+...........+.||.        .||.+.++.-....+++.+-..+...+.+
T Consensus        90 ----~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~--------~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen   90 ----RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR--------SRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             ----ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc--------ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence                01123567777777777777666655555556688985        48999998877777766655444443433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=1.6e-06  Score=87.68  Aligned_cols=176  Identities=13%  Similarity=0.032  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccC--chhhHHHHHHHHHHHHH
Q 039943           31 IIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVG--RYPMIGFGCITYLLGVV  108 (581)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~G--rr~~~~~~~~~~~~~~~  108 (581)
                      ..+..-+.+++....-+.++.++.+.+..+.-+.|+...-..+.+.++..+.|.++|| ++  |-.....++++......
T Consensus       275 ~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k-~~~~~wl~~~~gl~~~G~~~~  353 (464)
T KOG3764|consen  275 IAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADK-YPHLRWLLSLGGLATVGVSSG  353 (464)
T ss_pred             hhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHh-cCchhHHHHHHHHHHHHHHhc
Confidence            3333334444444455667788888888556588988888999999999999999999 69  54444455555555555


Q ss_pred             HHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHH
Q 039943          109 LLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYY  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (581)
                      ...++.                       ++..+++-+...+++.+...+.......+........+- +..++.+++..
T Consensus       354 ~iP~~~-----------------------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~-~vYGsVyaIad  409 (464)
T KOG3764|consen  354 PIPFAT-----------------------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGF-NVYGSVYAIAD  409 (464)
T ss_pred             hhHhhh-----------------------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhcccc-ceeeeHHHHHH
Confidence            555666                       667788888888888877777666666666655332111 26889999999


Q ss_pred             HHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh
Q 039943          189 VSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       189 ~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      .+..+|..+||.++|.+.+..|++|.-.+.++..++..-++.+
T Consensus       410 ~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l  452 (464)
T KOG3764|consen  410 AAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL  452 (464)
T ss_pred             HHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999877777766555444433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.22  E-value=7.8e-06  Score=84.26  Aligned_cols=165  Identities=12%  Similarity=0.085  Sum_probs=123.3

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc---cCchhhHHHH-HH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSC---VGRYPMIGFG-CI  101 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~---~Grr~~~~~~-~~  101 (581)
                      +.+..+....+--.+++..=.+++++|++ .+|++....+.+-.+--+...+.+|+.|..+|||   |||||-++.. .+
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            45555555556666666666788999996 7899999999999999999999999999999986   7887666555 44


Q ss_pred             HHHHHHHHHHHhhhcccCCCCccccccccccc--ccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchh
Q 039943          102 TYLLGVVLLWLTTILSQAQPPACDQLRSDCES--ATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGA  179 (581)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  179 (581)
                      ...++..++..+.+..-.        ..|++.  ..+.....++++.-+.=++.-..+..+-++++|+....++    ++
T Consensus       111 ~i~~~l~Lig~aaDig~~--------lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~----~~  178 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLL--------LGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK----KT  178 (498)
T ss_pred             HHHHHHhhhhhHhhhhHH--------hcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh----hh
Confidence            566677777777633221        111111  2335677788888888888888889999999999876543    33


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHhh
Q 039943          180 LQSYFSWYYVSVLASSMVAVTCIVYI  205 (581)
Q Consensus       180 r~~~~~~~~~~~~~g~~~~p~~~~~i  205 (581)
                      |  +.+++...+.+|..+|..++++.
T Consensus       179 ~--Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  179 R--ANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             c--cchhHHHHHHhcceeeeeccccc
Confidence            3  88888889999999999887754

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.20  E-value=4.5e-07  Score=93.49  Aligned_cols=148  Identities=13%  Similarity=0.119  Sum_probs=116.2

Q ss_pred             cccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCccc
Q 039943          372 SFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVK  451 (581)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  451 (581)
                      .++..-.+...++.|+.+.    +.+|+.|+       +++..|..+..++.+.-+..                      
T Consensus        72 ll~~vf~v~~~i~sPl~gy----LadryNR~-------~v~~vG~~iW~~Av~~~~fs----------------------  118 (493)
T KOG1330|consen   72 LLQTVFIVVFMIASPLFGY----LADRYNRK-------RVIAVGIFIWTLAVFASGFS----------------------  118 (493)
T ss_pred             chhHHHHHHHHHHHHHHHH----HHhhcCcc-------eEEeeHHHHHHHHHHHHHHH----------------------
Confidence            3444445555666676554    67776555       68999999998888877663                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCC
Q 039943          452 MSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNIN  531 (581)
Q Consensus       452 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~  531 (581)
                      -++|.+.+.-.+.|+||+...|..+.++.+.+|..+|++..++++++-.+|..+|-.....+.+.+.     .|      
T Consensus       119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~W------  187 (493)
T KOG1330|consen  119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WW------  187 (493)
T ss_pred             HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ce------
Confidence            2678888888999999999999999999999999999999999999999999888776666654332     25      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhhccccccccch
Q 039943          532 KGRYDYYYWLLAGLNMASFIYFLACCKAYGPCREEA  567 (581)
Q Consensus       532 ~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~  567 (581)
                          ++.|...+++.++..++.+++.++.+++..++
T Consensus       188 ----r~af~~~avl~vi~~~L~~~f~~eP~rga~~~  219 (493)
T KOG1330|consen  188 ----RWAFRGSAVLGVIVGLLVFLFVREPERGARDE  219 (493)
T ss_pred             ----EEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence                67788999999999999888888766654443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.20  E-value=4.7e-06  Score=90.07  Aligned_cols=145  Identities=9%  Similarity=-0.099  Sum_probs=112.4

Q ss_pred             hhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhh-hcccCCCCcccccccccc
Q 039943           54 CGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTT-ILSQAQPPACDQLRSDCE  132 (581)
Q Consensus        54 ~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  132 (581)
                      ++.+|+++.+.|.+.....++..++....+++.+| ++.|+++.++.++.+++........ .+.. .            
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~-~------------  345 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNL-A------------  345 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeecccc-c------------
Confidence            45799999999999999999999999999999999 7999999999988888775543211 0000 0            


Q ss_pred             cccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhcccc--
Q 039943          133 SATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLG--  210 (581)
Q Consensus       133 ~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g--  210 (581)
                       ....+.+.++..-++.+++.+........++.+..|+       +.+++.++++....++|..+++.+++++.++.|  
T Consensus       346 -~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~-------~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~  417 (468)
T TIGR00788       346 -FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPS-------GCESSVFALLASILHLGSSVSGFLGVLLMETIGIT  417 (468)
T ss_pred             -cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCC-------CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence             0001223455556778888888888889999999998       568999999999999999999999999988877  


Q ss_pred             ---chhhhHHHHH
Q 039943          211 ---WKVGFGVPAV  220 (581)
Q Consensus       211 ---~~~~f~~~~~  220 (581)
                         ++..+.+..+
T Consensus       418 ~~~~~~~~~~i~i  430 (468)
T TIGR00788       418 CDNSNNLWLLILG  430 (468)
T ss_pred             cccccchHHHHHH
Confidence               6655544333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.19  E-value=4.9e-05  Score=82.86  Aligned_cols=175  Identities=14%  Similarity=0.058  Sum_probs=115.4

Q ss_pred             HHHHHHHHhhhhhHHHHHhhh--hcCCcc------hhhHHHHHHHHHHHHHHHHHH----HHhhccccCchhhHHHHHHH
Q 039943           35 EAFERMASMGLMPNMILYLCG--EYNMET------TAGTNVLLIWTAATNFLPIIG----AFLADSCVGRYPMIGFGCIT  102 (581)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~--~~~~s~------~~~~~i~~~~~~~~~i~~~~~----G~laDr~~Grr~~~~~~~~~  102 (581)
                      .++....+|.+...++.++..  ..+.+.      ...+++.++..+...+..++.    +++.|| ++..+.+.+++++
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l  359 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVL  359 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHH
Confidence            334555566666666666442  111111      124566666666666666666    667777 5777889999999


Q ss_pred             HHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhH
Q 039943          103 YLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS  182 (581)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (581)
                      .+++.+.+.++.+...             ++ ...+.+++....++.|+|++...|...+++.+..|+       +.|++
T Consensus       360 ~~l~f~~l~~~~~~~~-------------~~-~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~-------~~rg~  418 (500)
T PRK09584        360 CSGAFLVLPLGAKFAN-------------DA-GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ-------RLMGF  418 (500)
T ss_pred             HHHHHHHHHHHHHhcC-------------CC-CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH-------HHHHH
Confidence            9999888877762211             00 122466788899999999999999999999999999       78999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhhc----------cccchhhhHHHHHHHHHHHHHHHh
Q 039943          183 YFSWYYVSVLASSMVAVTCIVYIQD----------NLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       183 ~~~~~~~~~~~g~~~~p~~~~~i~~----------~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      .+|.+.....+|..++..+......          ..++.+.|...+++.++..+++++
T Consensus       419 ~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        419 IMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9998887777777766655543211          123566777766655444433333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.19  E-value=2.9e-05  Score=79.13  Aligned_cols=138  Identities=14%  Similarity=0.130  Sum_probs=110.4

Q ss_pred             hhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcc
Q 039943           45 LMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPAC  124 (581)
Q Consensus        45 ~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (581)
                      .-++++.|+.+..|++..+++..++.+..+.++|.+++-++-.| +-..|++.+..+...+-.+...+++          
T Consensus       255 ~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~~~~~l~~----------  323 (422)
T COG0738         255 IGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLLLAVALIG----------  323 (422)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence            45788999988899999999999999999999999999999999 6999998887766666666666665          


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHh
Q 039943          125 DQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVY  204 (581)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  204 (581)
                                   +.. -+.+.++.|+..+..+|+..+...+..|...      +.+++   .-....+|+++-|.+.|+
T Consensus       324 -------------g~v-~~~~l~~ig~F~simfPTIfslal~~l~~~t------s~~s~---~l~maivGGAiiP~l~G~  380 (422)
T COG0738         324 -------------GVV-ALYALFLIGLFNSIMFPTIFSLALKNLGEHT------SVGSG---LLVMAIVGGAIIPPLQGV  380 (422)
T ss_pred             -------------ChH-HHHHHHHHHHHhHHHHHHHHHHHHhccCccc------cccce---eeeeheecchHHHHHHHH
Confidence                         333 3445678899999999999999999998533      23332   223456899999999999


Q ss_pred             hhccccchhhhH
Q 039943          205 IQDNLGWKVGFG  216 (581)
Q Consensus       205 i~~~~g~~~~f~  216 (581)
                      +.|..|-...+.
T Consensus       381 i~d~~g~~~~~~  392 (422)
T COG0738         381 IADMFGIQLTFL  392 (422)
T ss_pred             HHHhhhhHHHHH
Confidence            999988877766

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.19  E-value=4e-05  Score=82.15  Aligned_cols=206  Identities=12%  Similarity=0.020  Sum_probs=143.7

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhh-hcCCcch------h----hHHHHHHHHHHHHHHHHHHHHhhccc
Q 039943           21 PKGGLRTLPFIIANEAFERMASMGLMPNMILYLCG-EYNMETT------A----GTNVLLIWTAATNFLPIIGAFLADSC   89 (581)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~------~----~~~i~~~~~~~~~i~~~~~G~laDr~   89 (581)
                      .++.+|.++.+.+..++..++++.+..+...|+.+ .++-++.      +    ..+....+.+...+..++--++.+| 
T Consensus       253 ~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~-  331 (477)
T TIGR01301       253 FKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG-  331 (477)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            35667888999999999999999888888888864 3443221      1    2344455555556667777888999 


Q ss_pred             cCc-hhhHHHHHHHHHHHHHHHHHhhhccc-CCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhc
Q 039943           90 VGR-YPMIGFGCITYLLGVVLLWLTTILSQ-AQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQ  167 (581)
Q Consensus        90 ~Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~  167 (581)
                      +|+ |++..++.++.+++.....+..++.+ .++-..+|..   -.++....+..++...+.|+..+.....-++++++.
T Consensus       332 ~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~  408 (477)
T TIGR01301       332 WGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGES---LPPPTGIKASALIVFAILGIPLAITYSIPFALASIR  408 (477)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc---cCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Confidence            795 77779998888888877776542110 0000000000   001111236667778889999999999999999999


Q ss_pred             cCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhcccc--chhhhHHHHHHHHHHHHHHHhcCCc
Q 039943          168 LEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLG--WKVGFGVPAVISLLSALSFFLASPF  235 (581)
Q Consensus       168 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g--~~~~f~~~~~~~~i~~~~~~~~~~~  235 (581)
                      .++++     ++.|..+|+++.+..+...+..+..|.+.+..|  -.+.+.+.++.++++.+..++..|+
T Consensus       409 ~~~~~-----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       409 SSNLG-----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             ccccC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            98644     457999999999999999999988887655444  5567888888888887776665554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.17  E-value=0.00046  Score=71.75  Aligned_cols=155  Identities=14%  Similarity=0.163  Sum_probs=115.0

Q ss_pred             hhHHHHHhhhh-cCCcchhhH-HHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 039943           46 MPNMILYLCGE-YNMETTAGT-NVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPA  123 (581)
Q Consensus        46 ~~~l~~yl~~~-~~~s~~~~~-~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (581)
                      -+++.+|+.+. .|++..|.. -+.-+.+-.+....++...+.|. +|-|++++.+.+..++...++.+..         
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~---------   92 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT---------   92 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC---------
Confidence            36778899876 899998875 44555666777888999999999 7999999999999888888888877         


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHH
Q 039943          124 CDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIV  203 (581)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~  203 (581)
                                    +...+-+.-+..|++.+. ..+..+++-...|+       ++-.++.+....+.-+|-.++.+++-
T Consensus        93 --------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~-------~~yq~vts~~raa~l~g~~~s~~lgQ  150 (412)
T PF01770_consen   93 --------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDK-------EHYQKVTSYTRAATLVGRFISSLLGQ  150 (412)
T ss_pred             --------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          777787888888877665 34555665555555       56777888888888888888876665


Q ss_pred             hhhc--cccchhhhHHHHHHHHHHHHHHHhc
Q 039943          204 YIQD--NLGWKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       204 ~i~~--~~g~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                      .+..  ..++....++......++++..++.
T Consensus       151 llvs~~~~sy~~L~~isl~~~~~a~~~~~fL  181 (412)
T PF01770_consen  151 LLVSFGGVSYFQLNYISLASVSLALLIALFL  181 (412)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            5543  3457777777776666666554443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.16  E-value=3.7e-05  Score=83.52  Aligned_cols=174  Identities=11%  Similarity=0.056  Sum_probs=115.9

Q ss_pred             HHHHHHHhhhhhHHHHHhhhhcCCcc----hhhHHHHHHHHHHHHHHHHHHHHhhccccCchhh-------HHHHHHHHH
Q 039943           36 AFERMASMGLMPNMILYLCGEYNMET----TAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPM-------IGFGCITYL  104 (581)
Q Consensus        36 ~~~~~~~~~~~~~l~~yl~~~~~~s~----~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~-------~~~~~~~~~  104 (581)
                      .+....+......++.|.++..+.+.    -..+++.+...+...+..|+.|++.|| +|+|+.       +.+|+++.+
T Consensus       279 ~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~r-l~~r~~~~~~~~k~~~G~~l~~  357 (489)
T PRK10207        279 VVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTH-LGSKGKDLSMPMKFTLGMFLCS  357 (489)
T ss_pred             HHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHH-HhhCCCCCCcHHHHHHHHHHHH
Confidence            33445555555677777764322211    123455566667777888889999999 699974       777877777


Q ss_pred             HHHHHHHHhhh-cccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          105 LGVVLLWLTTI-LSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       105 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                      ++.+.++.... ...             . ....+.+++....++.|+|++...|...+++.+..|+       +.++.+
T Consensus       358 ~~~~~~~~~~~~~~~-------------~-~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~-------~~~g~~  416 (489)
T PRK10207        358 LGFLTAAAAGMWFAD-------------A-QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQ-------HLMGFI  416 (489)
T ss_pred             HHHHHHHHHHHhhcC-------------C-CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChH-------HHHHHH
Confidence            77654432210 000             0 0122567777889999999999999999999999998       779999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhhc----------cccchhhhHHHHHHHHHHHHHHHh
Q 039943          184 FSWYYVSVLASSMVAVTCIVYIQD----------NLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       184 ~~~~~~~~~~g~~~~p~~~~~i~~----------~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      .++++...++|..+|..++.+...          .-.+.+.|...++..++..++++.
T Consensus       417 ~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~  474 (489)
T PRK10207        417 LGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL  474 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998877765521          012455666655555544444443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.08  E-value=1.7e-05  Score=85.20  Aligned_cols=164  Identities=13%  Similarity=0.069  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc---cCchhhHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSC---VGRYPMIGFGCITYL  104 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~---~Grr~~~~~~~~~~~  104 (581)
                      +|...+..++.....|++..++|.|+.+..|++..+++.+...+.++..++.+++|+++||.   +.+|..+.....++.
T Consensus       275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~  354 (495)
T KOG2533|consen  275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA  354 (495)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            56777888899999999999999999986779999999999999999999999999999992   255666555555544


Q ss_pred             H-HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          105 L-GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       105 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                      + +.+.+....                       .....+.+......+.+...++......+.....      .+|.+.
T Consensus       355 ~~g~~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~------~k~~~~  405 (495)
T KOG2533|consen  355 IIGAISLLAAA-----------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGN------TKALTT  405 (495)
T ss_pred             HHHHHHHHhhc-----------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccch------HHhHHH
Confidence            4 334433333                       2223333333344445555666666666666442      345555


Q ss_pred             HHHHHHHHhh-HHHHHHHHHHhhhccccchhhhHHHHH
Q 039943          184 FSWYYVSVLA-SSMVAVTCIVYIQDNLGWKVGFGVPAV  220 (581)
Q Consensus       184 ~~~~~~~~~~-g~~~~p~~~~~i~~~~g~~~~f~~~~~  220 (581)
                      .+.+..+.+. |.+.+++..+.....++|...|++...
T Consensus       406 ~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~  443 (495)
T KOG2533|consen  406 VSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVA  443 (495)
T ss_pred             HhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHH
Confidence            5555555544 444444444555555788888855433

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.05  E-value=0.00026  Score=68.02  Aligned_cols=151  Identities=19%  Similarity=0.114  Sum_probs=91.5

Q ss_pred             HHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccc
Q 039943           51 LYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSD  130 (581)
Q Consensus        51 ~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (581)
                      .|+.+++++...|.+.+..+-....++...+.|.++|| -|||+...    .+.+..++++++..-              
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracv----tycitYiLsCiTKhS--------------  121 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACV----TYCITYILSCITKHS--------------  121 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hcccccee----eehHHHHHHHHhhcC--------------
Confidence            45667899999999888777667777777889999999 79999765    445555566666522              


Q ss_pred             cccccchhHHHHHHHHHHHHHhccccchhhhhh-hhhccCCCCCcccchhhhHHHHHHH-HHHhhHHHHHHHHHHhhhcc
Q 039943          131 CESATWSQLMLLYSALGLMSLGGGGIRSSSLAF-GAEQLEKGDENKSKGALQSYFSWYY-VSVLASSMVAVTCIVYIQDN  208 (581)
Q Consensus       131 ~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~p~~~~~i~~~  208 (581)
                            .++-.++++|++-|+..+...++..+. ++|.-.+.+-  .++-...-++-.- .+..+-++++.+.+-.+.++
T Consensus       122 ------pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~F--eqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~  193 (454)
T KOG4332|consen  122 ------PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGF--EQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDT  193 (454)
T ss_pred             ------CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCC--hHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence                  256678999999999999888777664 5555433221  0011111111111 11223333333444445554


Q ss_pred             c--cchhhhHHHHHHHHHHHHH
Q 039943          209 L--GWKVGFGVPAVISLLSALS  228 (581)
Q Consensus       209 ~--g~~~~f~~~~~~~~i~~~~  228 (581)
                      +  |-..+|-..+....++..+
T Consensus       194 ~slGPVAPFdAAacfLaigmAv  215 (454)
T KOG4332|consen  194 FSLGPVAPFDAAACFLAIGMAV  215 (454)
T ss_pred             hccCCCCchHHHHHHHHHHHHH
Confidence            3  5556666555555555433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.96  E-value=4.8e-05  Score=79.99  Aligned_cols=158  Identities=9%  Similarity=0.035  Sum_probs=128.6

Q ss_pred             hhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcc
Q 039943           45 LMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPAC  124 (581)
Q Consensus        45 ~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (581)
                      +.+++--++ ++.+-..+-.|.+......+-.+.-++.+++-.| +|+-+++..++..+.+=.+.+....          
T Consensus       390 v~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L~----------  457 (618)
T KOG3762|consen  390 VFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYLQ----------  457 (618)
T ss_pred             HHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHhc----------
Confidence            344443344 5667666666655566666667778899999999 6999999999999998888888777          


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHH-hhHHHHHHHHHH
Q 039943          125 DQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSV-LASSMVAVTCIV  203 (581)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~p~~~~  203 (581)
                                   |.|+.+-.-+++|+..+..+.++.+|+++..|+       +.|.++-++..... .+|-.+|.+++|
T Consensus       458 -------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp-------~l~at~Q~l~~g~f~GlG~g~GslIGG  517 (618)
T KOG3762|consen  458 -------------NPWMVLPIEILQGITHALIWAAIISYASHVAPP-------GLRATAQGLLQGIFHGLGKGLGSLIGG  517 (618)
T ss_pred             -------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCC-------cchHHHHHHHHHHhcccCcchhhhhhh
Confidence                         778888889999999999999999999999999       67888888877544 799999999999


Q ss_pred             hhhccccchhhhHHHHHHHHHHHHHHHhcCC
Q 039943          204 YIQDNLGWKVGFGVPAVISLLSALSFFLASP  234 (581)
Q Consensus       204 ~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~  234 (581)
                      .+...+|-+..|.+.+++.++.++.+.....
T Consensus       518 ~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~  548 (618)
T KOG3762|consen  518 FVVERFGARTTFRIFGIACLVTLALFISIQL  548 (618)
T ss_pred             hhheeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999998888777766655443

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.95  E-value=5.3e-05  Score=59.62  Aligned_cols=65  Identities=25%  Similarity=0.253  Sum_probs=54.4

Q ss_pred             HHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH
Q 039943           36 AFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCIT  102 (581)
Q Consensus        36 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (581)
                      ++...+...+.++++.|++ +.|++..|.|.+.++..+...+++++.|+++|| +||++.++....+
T Consensus        10 f~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~   74 (77)
T PF12832_consen   10 FFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHH
Confidence            3344444557788999987 589999999999999999999999999999999 6998888766544

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.87  E-value=0.00041  Score=76.03  Aligned_cols=184  Identities=14%  Similarity=0.105  Sum_probs=102.1

Q ss_pred             CCchHHHHHHHHHHHHHHH-hhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH
Q 039943           24 GLRTLPFIIANEAFERMAS-MGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCIT  102 (581)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~  102 (581)
                      .+|..........+..++. ..+..+.+..+ +..|.+... .+...+..+...++..++.++.|| +|||+.++.+.+.
T Consensus       292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~~~  368 (513)
T KOG0254|consen  292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGAAG  368 (513)
T ss_pred             hHHHHHHHHHHHHHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhHHH
Confidence            3444443444444444444 44555555554 466666443 555666677777888888999999 6999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhH
Q 039943          103 YLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS  182 (581)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (581)
                      +.++.++++..........        .  .........+....+.......+..|..+.+.+|.+|.       +.|+.
T Consensus       369 m~~~~~~~~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~-------~~r~~  431 (513)
T KOG0254|consen  369 MSICLVILAVVGVFALYYP--------N--SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL-------RLRSK  431 (513)
T ss_pred             HHHHHHHHHHHHHHhccCC--------C--cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH-------hHHhh
Confidence            9999988887652221000        0  00000111222222222222233345666788999999       67888


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHH
Q 039943          183 YFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSAL  227 (581)
Q Consensus       183 ~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~  227 (581)
                      +.++......+...+--.......+..++...|.+.+....+..+
T Consensus       432 ~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~  476 (513)
T KOG0254|consen  432 GASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLI  476 (513)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            888755444333332222222333333334455555554444444

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.87  E-value=1.7e-07  Score=100.68  Aligned_cols=184  Identities=14%  Similarity=0.156  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      +........+..+..+....+..+++.+..+.+..  -.......+...++.+++.++.|| +|||++++.+.++.+++.
T Consensus       254 ~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~  330 (451)
T PF00083_consen  254 LLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICS  330 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccccc
Confidence            33333444444444444444444555566777666  233344555666777888899999 799999999988888777


Q ss_pred             HHHH-HhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHH
Q 039943          108 VLLW-LTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSW  186 (581)
Q Consensus       108 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (581)
                      +.++ .......              .+...+...+............+..+....+.+|.+|.       +.|+++.++
T Consensus       331 ~~~~~~~~~~~~--------------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt-------~~R~~~~~~  389 (451)
T PF00083_consen  331 LILGIIFFLGVS--------------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPT-------KVRSTGIGL  389 (451)
T ss_pred             cccccccccccc--------------cccccccccceeeeeccccccccccccccccccccccc-------ccccccccc
Confidence            6665 1110000              00000111111111111112223446677889999999       679999999


Q ss_pred             HHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 039943          187 YYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPF  235 (581)
Q Consensus       187 ~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~  235 (581)
                      .+....+++.++|.+...+.+..+-...|.+.+.+.++..+...+..|+
T Consensus       390 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE  438 (451)
T PF00083_consen  390 SYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE  438 (451)
T ss_pred             ccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEee
Confidence            9988889999999888888777663345555555555555444444443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.84  E-value=0.01  Score=61.89  Aligned_cols=126  Identities=15%  Similarity=0.115  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHH
Q 039943           65 TNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYS  144 (581)
Q Consensus        65 ~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (581)
                      +.+..+-.+-..+..+++-++.+| +.-+.=+....++..+|.++.++++                       +.+.=++
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~-v~y~~Ri~~~~~l~~~g~l~va~~~-----------------------~v~~~l~  117 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHR-VPYWIRILICVALSAAGMLLVAFSP-----------------------SVWVRLL  117 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhh-ccchHHHHHHHHHHHHHHhheeecc-----------------------chhHHHH
Confidence            335555556677777788888898 5644334445667788888888876                       6777788


Q ss_pred             HHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhc-cccchhhhHHHHHHHH
Q 039943          145 ALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQD-NLGWKVGFGVPAVISL  223 (581)
Q Consensus       145 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~-~~g~~~~f~~~~~~~~  223 (581)
                      +..+.+++.|.......++.+ .+++.           ..+-+..+...++.+|+..-..+.+ ..+.|..+.+..+..+
T Consensus       118 Gv~las~ssg~GE~tfL~lt~-~y~~~-----------~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~  185 (402)
T PF02487_consen  118 GVVLASLSSGLGEVTFLSLTH-FYGKS-----------SLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPA  185 (402)
T ss_pred             HHHHHhhhhhhhHHHHHHHHH-hcCcc-----------ccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence            899999999998888888744 55541           2333344455566666644333433 2334556666655443


Q ss_pred             HHH
Q 039943          224 LSA  226 (581)
Q Consensus       224 i~~  226 (581)
                      +-+
T Consensus       186 ~~~  188 (402)
T PF02487_consen  186 IFL  188 (402)
T ss_pred             HHH
Confidence            333

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.69  E-value=0.057  Score=57.88  Aligned_cols=164  Identities=11%  Similarity=0.037  Sum_probs=100.4

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCc-----chhhHHHHHHHHHHHHHH-HHHHHHhhccccCchhhHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNME-----TTAGTNVLLIWTAATNFL-PIIGAFLADSCVGRYPMIGFG   99 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-----~~~~~~i~~~~~~~~~i~-~~~~G~laDr~~Grr~~~~~~   99 (581)
                      +.++...+..++-.+.|+.+.+     +.|.+..+     .+...++-....+.+.+. .++-+++++| ++|++++.+.
T Consensus         7 ~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~~   80 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYTV   80 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHHH
Confidence            4455555555666666554443     45666553     345666666665655555 8889999999 6999999988


Q ss_pred             HHHHHHHHHHHHHhhh-ccc-CCCC-cccccccccccc---------cchhHHHHHHHHHHHHHhccccch-hhhhhhhh
Q 039943          100 CITYLLGVVLLWLTTI-LSQ-AQPP-ACDQLRSDCESA---------TWSQLMLLYSALGLMSLGGGGIRS-SSLAFGAE  166 (581)
Q Consensus       100 ~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~~~g~~~~-~~~~~~~~  166 (581)
                      ...+.....++++.-- ..+ ..|. .+|+... ....         +.+....+++..=+.|   ....+ ..+++..|
T Consensus        81 ~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~-~~~~~~~~~i~~~~~W~~~~FYv~~elw~---~~vvS~lFW~fand  156 (472)
T TIGR00769        81 ISPFLGFFALFAFVIYPLSDLLHPTALADKLLS-LLPPGFMGFIAILRIWSFALFYVMAELWG---SVVLSLLFWGFANQ  156 (472)
T ss_pred             HHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHh-hcchhhHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence            8888777766666520 000 0000 0000000 0000         1112223443333333   22333 67899999


Q ss_pred             ccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhh
Q 039943          167 QLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQ  206 (581)
Q Consensus       167 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~  206 (581)
                      .+..       ++-.|.++++..+.|+|..+++.+..++.
T Consensus       157 i~t~-------~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       157 ITTI-------DEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             cCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988       66888999999999999999998888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PTZ00207 hypothetical protein; Provisional

Probab=97.65  E-value=0.00034  Score=76.83  Aligned_cols=129  Identities=15%  Similarity=0.088  Sum_probs=91.7

Q ss_pred             hhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 039943          391 ILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAF  470 (581)
Q Consensus       391 ~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  470 (581)
                      ..+++.+|+|+|       +.+.+|.++.++++++.+....         +       ....+.+.+++..++.++|.+.
T Consensus        80 p~G~L~Dr~G~R-------~vllig~ll~~iG~ll~ala~~---------~-------~i~~s~~~l~l~r~l~G~G~~~  136 (591)
T PTZ00207         80 PYSFIYDYLGPR-------PIFVLSMTVFCLGTLLFALTFQ---------E-------VIEGSVVRLSVYNGLMTLGCML  136 (591)
T ss_pred             HHHHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHHhc---------c-------cccCcHHHHHHHHHHHHHHHHH
Confidence            345677886655       6888999999998887776421         0       0013567777778889999988


Q ss_pred             HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHH
Q 039943          471 NMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASF  550 (581)
Q Consensus       471 ~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~  550 (581)
                      ..+.......+.+| +.||++.|+......+|+.+.+.+...+...       +|          ...|++++++.++..
T Consensus       137 ~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-------~~----------~~~fl~l~vl~~vv~  198 (591)
T PTZ00207        137 FDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-------NT----------SAYFFFLMSFALVVG  198 (591)
T ss_pred             HHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hH----------HHHHHHHHHHHHHHH
Confidence            88888878888887 5699999999999999998755544443321       22          556777888887777


Q ss_pred             HHHhhhhccc
Q 039943          551 IYFLACCKAY  560 (581)
Q Consensus       551 ~~~~~~~~~~  560 (581)
                      ++.+.+.+..
T Consensus       199 ll~~~~vr~p  208 (591)
T PTZ00207        199 ILAIVFMRLP  208 (591)
T ss_pred             HHHHhheeCC
Confidence            7766665543

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.62  E-value=0.0013  Score=69.61  Aligned_cols=124  Identities=15%  Similarity=0.119  Sum_probs=91.8

Q ss_pred             chhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHH
Q 039943          390 RILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMA  469 (581)
Q Consensus       390 ~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~  469 (581)
                      .....++||+|.|       +.+.++.+..++..++.++..                      +++.+.+.-++.|++++
T Consensus        80 Ip~GlLaDrlG~K-------~vL~l~~l~Wsl~t~L~~fa~----------------------Sl~~L~i~R~llGvaEA  130 (511)
T TIGR00806        80 VPVFLLTDYLRYK-------PVLVLQALSFVCVWLLLLLGT----------------------SVWHMQLMEVFYSVTMA  130 (511)
T ss_pred             HHHHHHHHHhCch-------HHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHH
Confidence            3344578886655       578888888777777766632                      56778888999999999


Q ss_pred             HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHH
Q 039943          470 FNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMAS  549 (581)
Q Consensus       470 ~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~  549 (581)
                      ... ....+++.-+|++.|++++|+.+....+|.++++.+.+.+.. .      +|-       .|....++..+...++
T Consensus       131 ~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s-~------gWr-------~y~~Ln~Isl~s~~~a  195 (511)
T TIGR00806       131 ARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT-L------GWI-------SYSTLNIISLVFMTFS  195 (511)
T ss_pred             HHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c------Cch-------hHHHHHHHHHHHHHHH
Confidence            999 999999999999999999999999999999999999998432 2      452       2444444444444445


Q ss_pred             HHHHhhhh
Q 039943          550 FIYFLACC  557 (581)
Q Consensus       550 ~~~~~~~~  557 (581)
                      +++.+++.
T Consensus       196 ~~~a~~LP  203 (511)
T TIGR00806       196 VFLALFLK  203 (511)
T ss_pred             HHHHHhCC
Confidence            55544443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.56  E-value=9.7e-05  Score=76.38  Aligned_cols=179  Identities=18%  Similarity=0.080  Sum_probs=118.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHH--------HHHHHHH-HHHHHHHHHHHhhccccCchhhHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTN--------VLLIWTA-ATNFLPIIGAFLADSCVGRYPMIG   97 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~--------i~~~~~~-~~~i~~~~~G~laDr~~Grr~~~~   97 (581)
                      .++.....+|...+++|+...+...-+ +..|+.+.+...        ...+... ++..+..++.++.|+ +|||+.-+
T Consensus       305 ~Llgt~~~WFllDiafy~~nL~~s~I~-~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~iq~  382 (538)
T KOG0252|consen  305 HLLGTAGTWFLLDIAFYGQNLFQSVIF-SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYIQL  382 (538)
T ss_pred             HHHHHHHHHHhhhhhhhccccHHHHHH-HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHHHH
Confidence            344455677777788888766655444 345554443332        1111222 222355666778999 79999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccc
Q 039943           98 FGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSK  177 (581)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~  177 (581)
                      .+.+++.+....++...+..                .+......++..-.  =++.-+-....-.+-+|.||.       
T Consensus       383 ~GF~~~~i~~~~~~~~y~~~----------------~~~~Gf~v~y~l~~--ff~NFGPn~ttfivpaE~FPa-------  437 (538)
T KOG0252|consen  383 MGFFIMTIFFFVIAGPYNQL----------------ENTIGFVVLYSLTF--FFGNFGPNATTFIVPAEIFPA-------  437 (538)
T ss_pred             hhHHHHHHHHHHHcCCcccc----------------cccCceeehHHHHH--HHHhcCCCceeEEeehhhchH-------
Confidence            99999998888777765210                01112222222222  233333334555667899999       


Q ss_pred             hhhhHHHHHHHHHHhhHHHHHHHHHHhhhc-----cccchhhhHHHHHHHHHHHHHHHhc
Q 039943          178 GALQSYFSWYYVSVLASSMVAVTCIVYIQD-----NLGWKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       178 ~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~-----~~g~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                      +.|+...++...+.-.|+++|.....++.+     ..+.+++|++.+.+++++.+..++.
T Consensus       438 rvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~  497 (538)
T KOG0252|consen  438 RVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI  497 (538)
T ss_pred             HHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence            789999999998889999999999999998     7889999999988888777665543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.53  E-value=0.00065  Score=73.26  Aligned_cols=122  Identities=13%  Similarity=0.070  Sum_probs=81.9

Q ss_pred             hhhHhhhh-cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 039943          392 LQPIASKI-RGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAF  470 (581)
Q Consensus       392 ~~~~~~r~-~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  470 (581)
                      ...+.||+ |+|       +.+.+|.++++++.++.....                     .+.......+.+..+|.++
T Consensus        65 gG~LaDRilGrr-------r~iliG~il~~lg~lll~~~~---------------------~~~~~~~l~l~li~iG~G~  116 (493)
T PRK15462         65 GGFLADKVLGNR-------MAVMLGALLMAIGHVVLGASE---------------------IHPSFLYLSLAIIVCGYGL  116 (493)
T ss_pred             HHHHHHHccCcH-------HHHHHHHHHHHHHHHHHHHhh---------------------cchhHHHHHHHHHHHhccc
Confidence            44577776 555       577888888887766543211                     0111223334445566666


Q ss_pred             HhhhhheeecccCCch--hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHH
Q 039943          471 NMIGQIEFYYSELPRS--MSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMA  548 (581)
Q Consensus       471 ~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~  548 (581)
                      ..+...+++.+.+|++  .|.++.++.....++|+.+++.+.+.+.+..      +|          +..|.+.++..++
T Consensus       117 ~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------Gw----------~~~F~iaaigm~l  180 (493)
T PRK15462        117 FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------SW----------AMGFGLAAVGMIA  180 (493)
T ss_pred             ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh------Ch----------HHHHHHHHHHHHH
Confidence            6677778888999875  7999999999989999999999999886532      34          7778776666665


Q ss_pred             HHHHHhhhh
Q 039943          549 SFIYFLACC  557 (581)
Q Consensus       549 ~~~~~~~~~  557 (581)
                      +.+.+++..
T Consensus       181 ~li~~~~~~  189 (493)
T PRK15462        181 GLVIFLCGN  189 (493)
T ss_pred             HHHHHHHhh
Confidence            555554433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.50  E-value=0.00064  Score=76.20  Aligned_cols=106  Identities=14%  Similarity=0.081  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC---CC--CCcCC
Q 039943          454 AMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGG---KE--GWIPS  528 (581)
Q Consensus       454 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~---~~--~w~~~  528 (581)
                      +..+++.-++.|+|.+...+....++.|.+|++.|+.+.|+......+|..+++.+.+.+.+......   .+  +.-++
T Consensus       172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~  251 (633)
T TIGR00805       172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPT  251 (633)
T ss_pred             ehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCC
Confidence            44556788999999999999999999999999999999999999999999999999888775432100   00  00000


Q ss_pred             CCC-CchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 039943          529 NIN-KGRYDYYYWLLAGLNMASFIYFLACCKA  559 (581)
Q Consensus       529 ~~~-~~~~~~~f~~~a~~~~~~~~~~~~~~~~  559 (581)
                      +-. .+.....|++.+++.++.++.++++.++
T Consensus       252 dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~  283 (633)
T TIGR00805       252 DPRWIGAWWIGFLICGGVALLTSIPFFFFPKA  283 (633)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            000 0112345777777777766655544433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.49  E-value=0.2  Score=53.19  Aligned_cols=192  Identities=12%  Similarity=-0.024  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGV  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  107 (581)
                      .+.+-..-++..+..=..-.-.+.|+.+-+.-+---.+..-.+-.+..++..+..|...|| .-|.+++..+++..-++.
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn~sv   82 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQNLSV   82 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHHHHH
Confidence            3444445555555554555556777776655444444444555556667778888999999 699999988877654443


Q ss_pred             HHHHHhhhcccCCCCcccccccccccc-cchhHHHHHHHHHHHH-HhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          108 VLLWLTTILSQAQPPACDQLRSDCESA-TWSQLMLLYSALGLMS-LGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      ...+..--.-.         ....+.. +......+++...+.| +.-=.......+.=-|+...-.+ ++...+.+..+
T Consensus        83 ~~s~~~~~~l~---------~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~-~~~~~La~~NA  152 (432)
T PF06963_consen   83 AASCALFLLLL---------SYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAG-GDPGALARMNA  152 (432)
T ss_pred             HHHHHHHHHHH---------hCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcC-CChhhHHHHHH
Confidence            32222110000         0000000 1112222333222332 22222222233333344332111 11144555555


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      ...-.=.+--.++|++.|.+.+..+......+.+...++++.+=.
T Consensus       153 ~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy  197 (432)
T PF06963_consen  153 TMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEY  197 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence            554444578899999999999888888777777666666665433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.35  E-value=0.0033  Score=68.90  Aligned_cols=152  Identities=9%  Similarity=-0.055  Sum_probs=107.2

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcch---hhHHHHHHHHHHHHHHHHHHHHhhccccCchhhH-HHHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETT---AGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMI-GFGC  100 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~---~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~-~~~~  100 (581)
                      .|.+...++..++..+.+|.+..+.|......++-+..   +.+++...+.++..++.++.|.+.-+ ++|-|.. +++.
T Consensus       309 ~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~-ir~~Kw~li~~~  387 (599)
T PF06609_consen  309 RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSK-IRHIKWQLIFGS  387 (599)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH-ccchhHHHHHHH
Confidence            46666667777888888888888888877767766653   57788888889999999999999988 6875554 5666


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhh
Q 039943          101 ITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGAL  180 (581)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r  180 (581)
                      +++.++...++...                     +.+....++..++.|++.|...........-..|+       +..
T Consensus       388 ~~~ta~~Gama~~~---------------------~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~-------~~i  439 (599)
T PF06609_consen  388 VLMTAFCGAMAAVR---------------------PDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPD-------EDI  439 (599)
T ss_pred             HHHHHHHHHHHHcc---------------------CCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCc-------hHH
Confidence            66655544444433                     11333345667788888887665555554444455       569


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhh
Q 039943          181 QSYFSWYYVSVLASSMVAVTCIVYI  205 (581)
Q Consensus       181 ~~~~~~~~~~~~~g~~~~p~~~~~i  205 (581)
                      +.+.++......+|+.+|..+..-+
T Consensus       440 g~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  440 GTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999998888889998888765444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.29  E-value=0.0015  Score=71.76  Aligned_cols=126  Identities=13%  Similarity=0.114  Sum_probs=96.1

Q ss_pred             ccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHH
Q 039943          388 YDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLA  467 (581)
Q Consensus       388 ~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g  467 (581)
                      ...+..++.||+|||       ..+..++++..++-+..++                      ..+++..++.-++.|++
T Consensus       134 G~~i~g~lsD~~GRk-------~~~~~~~~~~~i~~~~~a~----------------------a~~~~~~~~~Rfl~G~~  184 (521)
T KOG0255|consen  134 GSLIFGPLSDRFGRK-------PVLLVSLLLFIIFGILTAF----------------------APNYWMFLIFRFLSGFF  184 (521)
T ss_pred             HHhhheehHhhcccH-------HHHHHHHHHHHHHHHHHHH----------------------hCcHHHHHHHHHHHHhh
Confidence            334456788898888       4677777777666655555                      23777888888999999


Q ss_pred             HHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHH
Q 039943          468 MAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNM  547 (581)
Q Consensus       468 ~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~  547 (581)
                      ..........+..|..+++.|+.+..+ ....+.++.+++...+.+..        +|          .+.+++..+...
T Consensus       185 ~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------r~~~~~~~~~~~  245 (521)
T KOG0255|consen  185 GSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW----------RWLFWIISIPSG  245 (521)
T ss_pred             ccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------HHHHHHHHHHHH
Confidence            999999999999999999999999999 88888888888888877764        45          667777777777


Q ss_pred             HHHHHHhhhhccccc
Q 039943          548 ASFIYFLACCKAYGP  562 (581)
Q Consensus       548 ~~~~~~~~~~~~~~~  562 (581)
                      +.+++ +++.+|.++
T Consensus       246 ~~~~~-~~l~~Es~r  259 (521)
T KOG0255|consen  246 LFLLL-WFLPPESPR  259 (521)
T ss_pred             HHHHH-HHccCcChH
Confidence            66665 555545444

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.26  E-value=0.0025  Score=50.78  Aligned_cols=65  Identities=8%  Similarity=0.025  Sum_probs=59.5

Q ss_pred             HHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhh
Q 039943           49 MILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTT  114 (581)
Q Consensus        49 l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~  114 (581)
                      +.+.++++.++|.++++++.+...+++.+|.+...++.++ ..+++.+..+++...+....+++..
T Consensus        14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen   14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456778999999999999999999999999999999999 5889999999999999999998877

Note that many members are hypothetical proteins.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.19  E-value=0.0053  Score=62.40  Aligned_cols=124  Identities=10%  Similarity=0.015  Sum_probs=103.4

Q ss_pred             hhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccC--chhhHHHHHHHHHHHHHHHHHhhhcccCCCCccccccccc
Q 039943           54 CGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVG--RYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDC  131 (581)
Q Consensus        54 ~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (581)
                      -+.+|+++.|.|-+.+...+.+.+.+..-....||. .  -+-.+..++.+..-..++...+.                 
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~-~~~~~a~l~~~l~~~vP~~llls~~~-----------------  350 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRY-KGNIKAVLLFSLLLIVPAFLLLSLAR-----------------  350 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhcccccccc-ccchhhHHHHHHHHHHHHHHHHhccc-----------------
Confidence            467999999999999888888888888888888884 4  45556666666666666666666                 


Q ss_pred             ccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhcc
Q 039943          132 ESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDN  208 (581)
Q Consensus       132 ~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~  208 (581)
                            ....++++..+..+..+...++...++....|+       ++||...|+....+.++-++||+++|.+..+
T Consensus       351 ------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~-------~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  351 ------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQ-------SQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             ------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCc-------ccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence                  567789999999999999999999999998888       6799999999999999999999999888654

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.05  E-value=0.029  Score=50.67  Aligned_cols=114  Identities=11%  Similarity=0.180  Sum_probs=85.9

Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchh
Q 039943           59 METTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQ  138 (581)
Q Consensus        59 ~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (581)
                      ++....-.-.++......+++++...+.++ +|.|+.++++.+.+.+-...... +                       +
T Consensus        34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~-~-----------------------~   88 (156)
T PF05978_consen   34 ISAGLGYYSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFY-P-----------------------N   88 (156)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHh-h-----------------------h
Confidence            333343444566666777888888899999 79999999999888865444322 2                       4


Q ss_pred             HHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHh
Q 039943          139 LMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVY  204 (581)
Q Consensus       139 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  204 (581)
                      .+.++.+-++.|++.+..+.....++.+..++       +.+++-.+++......+..+|.++.-.
T Consensus        89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~-------~~~~~~~~ifw~i~~~s~i~G~~~~~~  147 (156)
T PF05978_consen   89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTE-------ETIGRNTGIFWAIFQSSLIFGNLFLFF  147 (156)
T ss_pred             HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH-------HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788889999999999999999999987766       568888888777777777777655433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.76  E-value=0.0095  Score=63.78  Aligned_cols=127  Identities=16%  Similarity=0.197  Sum_probs=106.5

Q ss_pred             HHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHH-HhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccc
Q 039943           48 NMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGA-FLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQ  126 (581)
Q Consensus        48 ~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G-~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (581)
                      .++.|+...++++.++.+...+.......+++.+.. .+.-. +|-|+++..|+....+...+.+++.            
T Consensus       263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~~------------  329 (463)
T KOG2816|consen  263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFAT------------  329 (463)
T ss_pred             EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHhc------------
Confidence            346788889999999999999999999999998887 66666 7999999999999999999999998            


Q ss_pred             cccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhh
Q 039943          127 LRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQ  206 (581)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~  206 (581)
                                 +.|..+....+.++. +...|...++++.+..+       +++++.+++......+...++|.+-+.+.
T Consensus       330 -----------~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~-------~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  330 -----------ETWMMFAAGVVVALA-GIVFPAIRAFASILVSP-------EEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             -----------cchhhhHHHHHHHhh-cchhHHHHhHHHhhccc-------ccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence                       667777776655544 56678888988888877       56999999999999999999998876653

>PRK03612 spermidine synthase; Provisional

Probab=96.47  E-value=0.18  Score=55.21  Aligned_cols=144  Identities=13%  Similarity=0.073  Sum_probs=82.0

Q ss_pred             HHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHH---HHHHHHhhhcccCCCCccccc
Q 039943           51 LYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLG---VVLLWLTTILSQAQPPACDQL  127 (581)
Q Consensus        51 ~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  127 (581)
                      -.+.-.+|-+..+.+.+++++.++..+|..++|+++++ .-|+ ...+-+.+..++   ..++.....+.          
T Consensus        39 r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~-~~~~e~~i~l~~~~~~~ll~~~~~~~----------  106 (521)
T PRK03612         39 TLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAG-FVAVELLLALLGGLSALILYAAFAFQ----------  106 (521)
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            33444578888899999999999999999999988755 2222 222222221111   11111111000          


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhc
Q 039943          128 RSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQD  207 (581)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~  207 (581)
                              ......++...++.++..|+..|....+..+...        ++-++..+..|....+|+++|.++.+++.-
T Consensus       107 --------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~--------~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612        107 --------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD--------QHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------cchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence                    0011223444556677777777777766544322        123455677777788888888888887654


Q ss_pred             -cccchhhhHHHHHHH
Q 039943          208 -NLGWKVGFGVPAVIS  222 (581)
Q Consensus       208 -~~g~~~~f~~~~~~~  222 (581)
                       .+|-....++.+.+.
T Consensus       171 p~lG~~~t~~~~a~l~  186 (521)
T PRK03612        171 PRLGLIRTAALTGSLN  186 (521)
T ss_pred             HhcchHHHHHHHHHHH
Confidence             466444444444433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.44  E-value=0.017  Score=60.11  Aligned_cols=175  Identities=15%  Similarity=0.135  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCch-hhHHHHHHHHHHHHHHHH
Q 039943           33 ANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRY-PMIGFGCITYLLGVVLLW  111 (581)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr-~~~~~~~~~~~~~~~~~~  111 (581)
                      ++....-..+++....+-.-+ ..-|.+...+|.+.....+++++++.+.|.++|| .... ++..+......++...+.
T Consensus       273 ~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dk-tk~fk~~~~v~~~~~~v~~~~l~  350 (480)
T KOG2563|consen  273 ICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADK-TKKFKLTTLVLYLFALVGTLMLL  350 (480)
T ss_pred             HHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444443222 2456777889999999999999999999999999 4543 444444444444432222


Q ss_pred             HhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhcc-CCCCCcccchhhhHHHHHHHHH
Q 039943          112 LTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQL-EKGDENKSKGALQSYFSWYYVS  190 (581)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~  190 (581)
                      .....                   ....+.++..-.+.|+..-+..|.-.-+..|.. |..|        +...|+....
T Consensus       351 ~~t~~-------------------~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E--------~tSsGll~~~  403 (480)
T KOG2563|consen  351 TCTLF-------------------LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE--------GTSSGLLNLS  403 (480)
T ss_pred             Hhhcc-------------------CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC--------cccceeEEee
Confidence            22211                   114456667777788888888888877777764 4433        2234444444


Q ss_pred             HhhHHHHHHHHHHhhhcccc----chhhhHHHHHHHHHHHHHHHhcCCcc
Q 039943          191 VLASSMVAVTCIVYIQDNLG----WKVGFGVPAVISLLSALSFFLASPFY  236 (581)
Q Consensus       191 ~~~g~~~~p~~~~~i~~~~g----~~~~f~~~~~~~~i~~~~~~~~~~~~  236 (581)
                      .++-+.+=...-+...+..+    |...-+......++..++..+.++.+
T Consensus       404 gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y  453 (480)
T KOG2563|consen  404 GQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDY  453 (480)
T ss_pred             hhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhH
Confidence            44444444445555655554    33233333334444444444444443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.19  E-value=0.041  Score=61.22  Aligned_cols=173  Identities=10%  Similarity=0.143  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHH-HHHHHHHHHHhhccc-cCchhhHHHHHHHHHHH
Q 039943           29 PFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAA-TNFLPIIGAFLADSC-VGRYPMIGFGCITYLLG  106 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~-~~i~~~~~G~laDr~-~Grr~~~~~~~~~~~~~  106 (581)
                      ....+...++...+-|..+++|.|+.++||.+...+..+++...+. ..+|.+++|++.-|+ ..-|.+..+.++...+.
T Consensus       395 ~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~  474 (735)
T KOG3626|consen  395 MLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLS  474 (735)
T ss_pred             HHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHH
Confidence            4566788889999999999999999999999999999999777665 458999999999984 23456665555555544


Q ss_pred             HHHHHH-----hhhccc--C------------------------------CCCcccccccc-------------------
Q 039943          107 VVLLWL-----TTILSQ--A------------------------------QPPACDQLRSD-------------------  130 (581)
Q Consensus       107 ~~~~~~-----~~~~~~--~------------------------------~~~~~~~~~~~-------------------  130 (581)
                      .+....     ..+...  +                              ..++|++++.+                   
T Consensus       475 l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~  554 (735)
T KOG3626|consen  475 LLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGN  554 (735)
T ss_pred             HHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCc
Confidence            433111     011100  0                              01333333111                   


Q ss_pred             -----------------------cccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHH
Q 039943          131 -----------------------CESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWY  187 (581)
Q Consensus       131 -----------------------~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (581)
                                             |+......+..|++..++..+..+...+....++-+..++       ++|.-+.|+.
T Consensus       555 ~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~-------e~ks~AlG~~  627 (735)
T KOG3626|consen  555 TIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPP-------EEKSFALGFQ  627 (735)
T ss_pred             eeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCc-------hhchhhhHHH
Confidence                                   1111133445555555555555555555566666677777       5699999998


Q ss_pred             HHHH-hhHHHHHHHHHHhhhcc
Q 039943          188 YVSV-LASSMVAVTCIVYIQDN  208 (581)
Q Consensus       188 ~~~~-~~g~~~~p~~~~~i~~~  208 (581)
                      .+.. .+|.+-+|++-|++.|.
T Consensus       628 ~~~irllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  628 WMLIRLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             HHHHHHHhcCCchHhhhhhHhh
Confidence            8766 58999999999998874

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.15  E-value=0.058  Score=57.54  Aligned_cols=136  Identities=14%  Similarity=0.081  Sum_probs=84.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccc-hHHHHHHHHHHHHHHHHHHhhhhheeecccCCc
Q 039943          407 RLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKM-SAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPR  485 (581)
Q Consensus       407 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~  485 (581)
                      +.++.+..|.+++.++-+++...+..                  +. ..+.+.++.++.|+|.+-.. ..-.|+.+..-.
T Consensus       100 ~~k~Pli~s~ii~~~g~llY~~l~~~------------------~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~  160 (488)
T KOG2325|consen  100 SVKKPLIVSFLIAIIGNLLYLALAYV------------------PNGVKYLMLVARILTGVGVGNFA-VLRAYIADASTV  160 (488)
T ss_pred             CcccCHHHHHHHHHHHHHHHHHHHhc------------------ccchHHHHHHHHHHcCcCcccHH-HHHHHHHhccCc
Confidence            33567889999999998888655431                  12 55677888899888854433 344566665445


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 039943          486 SMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCR  564 (581)
Q Consensus       486 ~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~  564 (581)
                      +.|.++.+.......+|.++|+.+.........  .+..|+++ ..-+-|...-|+.++++++.+++.+++.+|..+..
T Consensus       161 ~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~--~G~~i~~~-~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  161 EDRPRAFAATSGGFVLGIILGPTIQLAFTPLGE--KGFMILPG-LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             cchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcC--CceEEcCc-ceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence            556667766666666666666665444332211  11234333 22233455667888888888888888888754443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=96.14  E-value=1.9  Score=44.33  Aligned_cols=60  Identities=3%  Similarity=-0.035  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039943          456 WVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDE  515 (581)
Q Consensus       456 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~  515 (581)
                      ..+..+.+.+......+....++-.+++|+...|+.+.+.|...++|+--=..+...+.|
T Consensus       371 l~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D  430 (510)
T KOG3574|consen  371 LLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD  430 (510)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence            344456676666666667777888899999999999999888777766554444444544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.86  E-value=0.15  Score=54.02  Aligned_cols=147  Identities=16%  Similarity=0.103  Sum_probs=98.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccccCch-------hhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccc
Q 039943           64 GTNVLLIWTAATNFLPIIGAFLADSCVGRY-------PMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATW  136 (581)
Q Consensus        64 ~~~i~~~~~~~~~i~~~~~G~laDr~~Grr-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (581)
                      .++..+...+.-.+..|+..++--+ .+++       .-+-+++++...+.+++........             ..++.
T Consensus       326 ~~~fQslNp~~Iii~~pI~a~l~~~-l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~-------------~~~~~  391 (498)
T COG3104         326 PAWFQSLNPFFIILFSPILAALWTK-LGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFG-------------GPSGL  391 (498)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhH-hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhc-------------CCCCC
Confidence            3456677777777778888888777 4554       2244556666666655555421000             01345


Q ss_pred             hhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHh------hhcccc
Q 039943          137 SQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVY------IQDNLG  210 (581)
Q Consensus       137 ~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~------i~~~~g  210 (581)
                      .+.++++...+++++|+=+..|...++++...|+       +-.+..++.+......|..++..+.+.      ..+...
T Consensus       392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~-------~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~  464 (498)
T COG3104         392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPP-------ALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFI  464 (498)
T ss_pred             cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChH-------HHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhh
Confidence            5889999999999999999999999999999998       678888888887777777777666552      222334


Q ss_pred             chhhhHHHHHHHHHHHHHHHh
Q 039943          211 WKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       211 ~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      ....|+..+...++..+.+..
T Consensus       465 ~~~~F~~~g~v~i~~~~~~~~  485 (498)
T COG3104         465 EGRVFGTIGVVAIVIGILLLL  485 (498)
T ss_pred             hhhhHHHHHHHHHHHHHHHHH
Confidence            555677766655544444433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=95.60  E-value=0.13  Score=50.24  Aligned_cols=93  Identities=10%  Similarity=0.088  Sum_probs=65.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCc
Q 039943          406 LRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPR  485 (581)
Q Consensus       406 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~  485 (581)
                      .++...+.+|.+...+++.+......         +      ...+.+.|.+.+..++.+.+..+..........+.+|.
T Consensus        63 ~gp~~~l~iG~~~~~~GY~~~~l~~~---------~------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~  127 (250)
T PF06813_consen   63 FGPWVVLLIGAVLGFVGYGLLWLAVS---------G------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR  127 (250)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHh---------C------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc
Confidence            45667788999888888876655432         1      11234667666666676667666666666666678885


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039943          486 SMSSIASALHGLGMSVASLVASFIMNAVD  514 (581)
Q Consensus       486 ~~rg~~~g~~~~~~~ig~~i~~~i~~~i~  514 (581)
                       +||++.|+.-....+++.+-+.+...++
T Consensus       128 -~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  128 -SRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             -ccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence             6999999999888888888777666554

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.10  E-value=0.066  Score=55.99  Aligned_cols=125  Identities=10%  Similarity=-0.001  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCch---
Q 039943          410 QRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRS---  486 (581)
Q Consensus       410 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~---  486 (581)
                      +.+.+|.++..+|++++......     ..        ...+.+.+.+.+.+.++++|.++.-|+...+..++.+++   
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~-----~~--------~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~   68 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIP-----PS--------LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS   68 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTS-----SS--------C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhc-----ch--------hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence            46778888888888876654320     00        011223456677888899999999999999999998865   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 039943          487 MSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPC  563 (581)
Q Consensus       487 ~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~  563 (581)
                      .|.++-..+..+.++|..++..+.+++.+..                ++...|.+.++..+++.+.++.-.++++.+
T Consensus        69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~----------------~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQNY----------------GWFLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-----------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hhhhhHHHHHHHHhhhhHhhcccchhhcccc----------------chhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            4556666778888899999988888776432                347788888888888888877776666554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.03  E-value=0.94  Score=48.13  Aligned_cols=145  Identities=8%  Similarity=-0.040  Sum_probs=107.3

Q ss_pred             HHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhc
Q 039943           37 FERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTIL  116 (581)
Q Consensus        37 ~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~  116 (581)
                      +-.++.-++-..+..|+..+ |+++...|..-+.-.+....+++...++.+| +|-.|.=++++........++..+-+.
T Consensus       269 lLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~  346 (432)
T PF06963_consen  269 LLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWA  346 (432)
T ss_pred             HHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhc
Confidence            33344445567788899766 9999999999999999999999999999999 699999999988877766666554432


Q ss_pred             ccCCCCcccccccccccc-cchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHH
Q 039943          117 SQAQPPACDQLRSDCESA-TWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASS  195 (581)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  195 (581)
                      +.              ++ +..+...++.+.++-=+|.=++--+..-++-|..|+       ++|+...+.-....++.-
T Consensus       347 ~~--------------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~-------~~Rg~v~gvq~sl~~lf~  405 (432)
T PF06963_consen  347 PG--------------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE-------SERGAVSGVQNSLQSLFE  405 (432)
T ss_pred             CC--------------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH-------HHhhHHHHHHHHHHHHHH
Confidence            22              00 122445555555554466666667777788888887       679999999998888888


Q ss_pred             HHHHHHHHh
Q 039943          196 MVAVTCIVY  204 (581)
Q Consensus       196 ~~~p~~~~~  204 (581)
                      .+-.+++-.
T Consensus       406 ll~~~~~ii  414 (432)
T PF06963_consen  406 LLSFVLTII  414 (432)
T ss_pred             HHHHHHHhc
Confidence            887765443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.87  E-value=0.0049  Score=67.53  Aligned_cols=104  Identities=11%  Similarity=0.024  Sum_probs=2.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----c--------CC
Q 039943          454 AMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITK----R--------GG  521 (581)
Q Consensus       454 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~----~--------~~  521 (581)
                      ++.+++..++.|+|..-..+-..+|+.|.++++..+.+.|+......+|.++|-.+.+.+.....    .        ..
T Consensus       141 ~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~  220 (539)
T PF03137_consen  141 FYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPS  220 (539)
T ss_dssp             -----------SSS------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCC
Confidence            45566688999999999999999999999999999999999999999999999888776654321    0        11


Q ss_pred             CCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 039943          522 KEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPC  563 (581)
Q Consensus       522 ~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~  563 (581)
                      +..|+      |...--|.+.+++.++..+.++++.|+.++.
T Consensus       221 dp~Wv------GAWWLGfli~g~~~~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  221 DPRWV------GAWWLGFLICGILLFLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             ------------------------------------------
T ss_pred             CccHH------HHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence            22332      2223346677888888888877776665554

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=93.50  E-value=1  Score=50.58  Aligned_cols=134  Identities=13%  Similarity=0.037  Sum_probs=85.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCc
Q 039943          406 LRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPR  485 (581)
Q Consensus       406 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~  485 (581)
                      ++..+.+.++.++..+++.+......      +.        .............+.+.++|.+..-|...++..++.++
T Consensus        51 lG~~~tIl~~~ii~~lG~~llai~a~------~~--------~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~  116 (654)
T TIGR00926        51 LGKFKTILYLSIVYVVGHALLSFGAI------PS--------SGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE  116 (654)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhccC------cc--------cccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc
Confidence            34446788888888888766654211      00        00011223345667888889999999999999998875


Q ss_pred             h---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhccccc
Q 039943          486 S---MSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGP  562 (581)
Q Consensus       486 ~---~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~  562 (581)
                      +   .+-..-.++....++|+.+++.+.+.+.+..+     .+    ..+.++...|.+.+++++++.+++....+++++
T Consensus       117 ~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~-----~f----g~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~  187 (654)
T TIGR00926       117 RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVG-----CF----GCQDCYPLAFGVPAILMILALIVFMAGSKMYKK  187 (654)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cc----ccCcchHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence            4   35556666777777888888888887753221     00    001134677888888888888887766665543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=92.93  E-value=0.69  Score=49.48  Aligned_cols=116  Identities=21%  Similarity=0.141  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccC---Cc
Q 039943          409 KQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSEL---PR  485 (581)
Q Consensus       409 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---P~  485 (581)
                      +.-+.++.++.+++.+.++.....                  ..+.......+++..+|..+.-...-+.+.|..   |.
T Consensus        59 ~~Y~~i~~~~~~~~~~~~~~~~~~------------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~  120 (433)
T PF03092_consen   59 KPYMIIGWLLGAVSALVLALLPAS------------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE  120 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccc------------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence            356777777776666555543210                  112333444556667777777776666666654   44


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 039943          486 SMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKA  559 (581)
Q Consensus       486 ~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~  559 (581)
                      + +|..++....+..+|++++..+.|.+.+..                +++..|.+.+++..+..+..+++.+|
T Consensus       121 ~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~----------------~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  121 S-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSF----------------GPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             h-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcC----------------CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            4 888899999999999999999988776532                12445777777777777676777665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=92.91  E-value=0.36  Score=50.62  Aligned_cols=166  Identities=10%  Similarity=-0.039  Sum_probs=99.7

Q ss_pred             HhHHhhHhHHHhhHHHHHhhcC-CChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCC
Q 039943          326 KALIKVIPLWSTGIMIAVTISQ-SSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPC  404 (581)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~  404 (581)
                      ++++......+.....|+...+ .+.+++. ........       ..+-...++..++..|+++..+|+.-.|+|||+ 
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~-------S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR-  102 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWS-------SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR-  102 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccc-------cccccccccccceeccccccccccccccccccc-
Confidence            3444444444555666776666 5554433 23333321       122233466667788998888888888888773 


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCC-cccchHHHHHHHHHHHHHHHHHHhhhhheeecccC
Q 039943          405 QLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRA-VVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSEL  483 (581)
Q Consensus       405 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  483 (581)
                           ..+..+.+..++++....+..+...-...+      ... .........++.+.+.-++.-+...+.-++..+..
T Consensus       103 -----PfI~~~s~~i~~~l~Lig~aaDig~~lgd~------~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~  171 (498)
T KOG0637|consen  103 -----PFILAGSLLIAVSLFLIGYAADIGLLLGDN------ERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLA  171 (498)
T ss_pred             -----chHHHhhHHHHHHHhhhhhHhhhhHHhcCC------cccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhc
Confidence                 456777777777777666654432222222      221 11223333444555666666677777777888875


Q ss_pred             CchhhHH-HHHHHHHHHHHHHHHHHHHHH
Q 039943          484 PRSMSSI-ASALHGLGMSVASLVASFIMN  511 (581)
Q Consensus       484 P~~~rg~-~~g~~~~~~~ig~~i~~~i~~  511 (581)
                      -.+.+-+ +.+.+.+...+||.+|-.+.+
T Consensus       172 ~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  172 RGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             cChhhhhccchhHHHHHHhcceeeeeccc
Confidence            5544555 999999999999999876655

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.55  E-value=4.9  Score=42.94  Aligned_cols=116  Identities=19%  Similarity=0.142  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHhh---ccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccc-ccccccc--ccchhHHHHHH
Q 039943           71 WTAATNFLPIIGAFLA---DSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQ-LRSDCES--ATWSQLMLLYS  144 (581)
Q Consensus        71 ~~~~~~i~~~~~G~la---Dr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~  144 (581)
                      ..++..++..+.+.++   ++ +||++++.++.++..++.++.-+..  |.      |- .+-|.+.  -.+.+.....+
T Consensus       288 ~g~g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~~~~li~l~~--p~------dap~~~t~~~~~~~~~~~~~~~i  358 (461)
T KOG3098|consen  288 IGLGEVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLIGFLLIHLSF--PN------DAPLRPTDSPPLLFTPSYYLALI  358 (461)
T ss_pred             HhHHHHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHHHHHHHhccc--cc------cCCCCCCcccccccccchhHHHH
Confidence            3344445555556665   45 6999999999998888877776654  11      10 0111111  12334556666


Q ss_pred             HHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHH
Q 039943          145 ALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIV  203 (581)
Q Consensus       145 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~  203 (581)
                      .-++.|++-+......+..+++.+|+        +|..+++++..-..++..++.....
T Consensus       359 i~~l~G~~D~~~~t~~~~ii~~~~~~--------~~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  359 IGFLLGFGDACFNTQRYVIIALLYPD--------DRAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhcC--------chHHHHHHHHHHHHHHHHHHhhhhh
Confidence            67889999999999999999999954        4777777777766666665544333

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=91.83  E-value=21  Score=38.30  Aligned_cols=167  Identities=11%  Similarity=-0.026  Sum_probs=101.2

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCc---chhhHHHHHHHHH-HHHHHHHHHHHhhccccCchhhHHHHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNME---TTAGTNVLLIWTA-ATNFLPIIGAFLADSCVGRYPMIGFGC  100 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~~~~i~~~~~~-~~~i~~~~~G~laDr~~Grr~~~~~~~  100 (581)
                      ++.+..+.+..+|-.+.+..+.     -+.|.+.++   ++...++-...-+ .+.+..++-+++.++ .-|.+++..-+
T Consensus        26 ~~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~-lt~~~vF~~~~   99 (509)
T COG3202          26 LKKFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNI-LTREKVFYIIL   99 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhh-cCHHHHHHHHH
Confidence            4455555555555555443222     244555544   3444555555555 667888999999999 69999999988


Q ss_pred             HHHHHHHHHHHHhhhccc--C-CCCc--ccccccccc-cc-------cchhHHHHHHHHHHHHHhccccchhhhhhhhhc
Q 039943          101 ITYLLGVVLLWLTTILSQ--A-QPPA--CDQLRSDCE-SA-------TWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQ  167 (581)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~--~-~~~~--~~~~~~~~~-~~-------~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~  167 (581)
                      ..+....+++++.-. |.  . .++|  .+|.-.+++ +-       +.++...+++.-=+.|.-  ...-..+.+..|+
T Consensus       100 ~~F~~fF~LFa~Vi~-P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgsl--V~S~lFw~faNei  176 (509)
T COG3202         100 GFFLGFFALFAFVIY-PYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSL--VLSLLFWQFANEI  176 (509)
T ss_pred             HHHHHHHHHHHHHHh-ccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence            888888888887652 11  1 1111  111112222 11       123444444443333311  1112456777888


Q ss_pred             cCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhc
Q 039943          168 LEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQD  207 (581)
Q Consensus       168 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~  207 (581)
                      ...       ++-.|.+++++...|++..++..+..++..
T Consensus       177 tt~-------~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         177 TTI-------EEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             hhH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            877       568889999999999999999888888765

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=90.64  E-value=3.6  Score=37.08  Aligned_cols=62  Identities=10%  Similarity=0.050  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039943          453 SAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVD  514 (581)
Q Consensus       453 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~  514 (581)
                      +.+.+++.-++.|++.+..+++.-.++.+...++.+++-.++.......+.++|..+.-.+.
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788899999999999999999999999999999999998888888888877655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=90.53  E-value=29  Score=37.66  Aligned_cols=137  Identities=12%  Similarity=0.062  Sum_probs=79.8

Q ss_pred             cchhhHHHHHHHHH-HHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhccc---CCCCcc-cccc-ccccc
Q 039943           60 ETTAGTNVLLIWTA-ATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQ---AQPPAC-DQLR-SDCES  133 (581)
Q Consensus        60 s~~~~~~i~~~~~~-~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~-~~~~~  133 (581)
                      +++....+-....+ ...+...+-.+++|+ ++|.+++.+.+..+.....+.++.- +|.   +.+.+. |+.. ...++
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~-~s~~~lFy~~~~~F~~fF~~f~~vl-yP~~~~lhp~~~~~~~~~~~~~~  133 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNR-LSREKLFYIIIIPFLGFFALFAFVL-YPNRDILHPDAFADKLLAILPPG  133 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHH-hhchhhcCCCHHHHHhhhhccch
Confidence            33334444333333 445667788999999 6999999988877777666666543 111   111110 0000 00000


Q ss_pred             c-------cchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhh
Q 039943          134 A-------TWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQ  206 (581)
Q Consensus       134 ~-------~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~  206 (581)
                      -       +.++...+|+.-=+.|  .-...-..+.+..|.++.       ++-.+.++++..+.|+|..++..+..++.
T Consensus       134 ~~~~i~~~~~Wt~slfYv~aElwg--svvlSlLFW~fAN~itt~-------~eAKRfYpl~g~ganigli~sG~~~~~~~  204 (491)
T PF03219_consen  134 FKGFIAMFRNWTFSLFYVMAELWG--SVVLSLLFWGFANEITTV-------EEAKRFYPLFGLGANIGLIFSGQLTSYFS  204 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0       1122223333333332  111122468888999888       66889999999999999999998888776


Q ss_pred             c
Q 039943          207 D  207 (581)
Q Consensus       207 ~  207 (581)
                      +
T Consensus       205 ~  205 (491)
T PF03219_consen  205 S  205 (491)
T ss_pred             H
Confidence            6

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=90.40  E-value=4  Score=42.78  Aligned_cols=61  Identities=11%  Similarity=0.009  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhh
Q 039943          138 QLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYI  205 (581)
Q Consensus       138 ~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i  205 (581)
                      +.+..++..+..|+..|..+.+....+.|..++       ++|.-.++....+-++|..++..++-++
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~-------~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPP-------EDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            677777888999999999999999999998776       5699999988888888888887766554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=90.22  E-value=15  Score=39.69  Aligned_cols=77  Identities=9%  Similarity=0.022  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHH
Q 039943          142 LYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVI  221 (581)
Q Consensus       142 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~  221 (581)
                      +.+..++.++..-......-..+.+.+|++      .+|...++-+....++.+.+..++++.+.+..||.....+.-++
T Consensus       269 ia~~vi~y~~~~nlve~~~k~~v~~~~p~~------~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii  342 (472)
T TIGR00769       269 LALLVIAYGISINLVEVTWKSKLKAQYPSP------NEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLV  342 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            333445556666666666778888888764      46899999988888888877777779999999999776664444


Q ss_pred             HHH
Q 039943          222 SLL  224 (581)
Q Consensus       222 ~~i  224 (581)
                      .++
T Consensus       343 ~li  345 (472)
T TIGR00769       343 MLL  345 (472)
T ss_pred             HHH
Confidence            443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=89.00  E-value=5.9  Score=40.44  Aligned_cols=152  Identities=13%  Similarity=0.125  Sum_probs=87.4

Q ss_pred             hHHHHHhh-hhcCCcchhhH-HHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcc
Q 039943           47 PNMILYLC-GEYNMETTAGT-NVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPAC  124 (581)
Q Consensus        47 ~~l~~yl~-~~~~~s~~~~~-~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (581)
                      +++.+|+. .+.+++..|.. -+.=+.+-.+.+.-++.=-+.|. .--|++++.-.+...+...++-+..          
T Consensus        25 P~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~-lrYKPvivlq~ls~v~~w~~lv~g~----------   93 (433)
T KOG3810|consen   25 PYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDY-LRYKPVVVLQALSGVPVWIMLVFGP----------   93 (433)
T ss_pred             CccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhh-hhcceeeeeeccchhHHHHHHHhcC----------
Confidence            45566665 45667666542 23334444555566666678998 5677887776666666666666665          


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHh
Q 039943          125 DQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVY  204 (581)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  204 (581)
                                   +.+.+=+.-+..    |...++-.++-++.+.+-++    +.+.++.+....+.-.|-..|..++-.
T Consensus        94 -------------sV~~mQvlE~Fy----G~~tAaEIAYysYIYs~Vd~----~~Yqrvt~y~RaA~L~g~~~g~vlaQl  152 (433)
T KOG3810|consen   94 -------------SVKAMQVLEFFY----GPATAAEIAYYSYIYSKVDP----EMYKRVTGYCRAAFLVGKFVGSVLAQL  152 (433)
T ss_pred             -------------Cchheeeehhhc----ChHHHHHHhhhheeeeecCH----HHHHHHHHHhHHHHHHHhHHHhHHHHH
Confidence                         222222222233    33344444555555544333    678888888888888888888776665


Q ss_pred             hhc--cccchhhhHHHHHHHHHHHHHHH
Q 039943          205 IQD--NLGWKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       205 i~~--~~g~~~~f~~~~~~~~i~~~~~~  230 (581)
                      +..  ..++...=+++.....++.+...
T Consensus       153 Lvs~~~~sy~~LN~ISL~~~~ia~~~A~  180 (433)
T KOG3810|consen  153 LVSLETLSYTTLNYISLAEVTIAVLLAL  180 (433)
T ss_pred             HhhhcccchhhhchhhHHHHHHHHHHHh
Confidence            543  23454444445544444544433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=88.87  E-value=36  Score=36.38  Aligned_cols=59  Identities=10%  Similarity=0.060  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039943          453 SAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMN  511 (581)
Q Consensus       453 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~  511 (581)
                      +-++.++.+++.|+..+........+..+.++++.|..+..+..+...+|-.+|+.+.-
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566667888999999988888888888899999999999998888888888877643

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=88.02  E-value=14  Score=37.89  Aligned_cols=93  Identities=15%  Similarity=0.066  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheee-----cccCCchhhHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhcCCCCCCc
Q 039943          453 SAMWVLPYHVLSGLAMAFNMIGQIEFY-----YSELPRSMSSIASALHG-LGMSVASLVASFIMNAVDEITKRGGKEGWI  526 (581)
Q Consensus       453 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~P~~~rg~~~g~~~-~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~  526 (581)
                      +.+.+++.=++.|++..+.+...-++.     -...|++..+...+... ..+.+-.+.+..+...+.+..+.       
T Consensus       120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~-------  192 (354)
T PF05631_consen  120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF-------  192 (354)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC-------
Confidence            455667777777777766665543322     23356665555444443 33444444444444444433221       


Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 039943          527 PSNINKGRYDYYYWLLAGLNMASFIYFLACCKA  559 (581)
Q Consensus       527 ~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~  559 (581)
                             +....|.....+.+++.++.....+|
T Consensus       193 -------g~vaPF~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  193 -------GPVAPFDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             -------CCcchHHHHHHHHHHHHHHHHhcccc
Confidence                   11335666666666666665554444

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=86.78  E-value=6  Score=39.97  Aligned_cols=114  Identities=13%  Similarity=0.051  Sum_probs=66.7

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      .|.++.+....++...++-|. .++......++|    ..+  .+...+.-..++++.+.+..+ +|-|.++..+...+.
T Consensus        28 ~knv~i~s~~fl~~f~a~~gl-~nlq~~vn~~lg----~~s--l~~~y~~l~~s~m~~~~~Ir~-~g~K~tm~lav~~Y~   99 (390)
T KOG3097|consen   28 LKNVLILSIAFLLTFTAYLGL-QNLQTSVNYDLG----TVS--LGALYLSLIDSSMFMPLLIRF-LGTKWTMVLAVFPYA   99 (390)
T ss_pred             hhhhhHHHHHHHHHHHHHHHH-HHHHHHHhcCcc----cch--hhhhhHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHH
Confidence            444555555444444444333 333333322222    222  233344455566666677777 799999988766655


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCC
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEK  170 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~  170 (581)
                      .....--.                        ..+..++-+-...|+|.+..+..--+++++.-..
T Consensus       100 lyiA~Nl~------------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~  141 (390)
T KOG3097|consen  100 LYIAANLE------------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQN  141 (390)
T ss_pred             HHHHhhcc------------------------hhHHhhccHHHhhccccccccccCcceecHHHHH
Confidence            43322111                        1456677778889999999998888887776544

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=86.20  E-value=5.5  Score=42.60  Aligned_cols=57  Identities=11%  Similarity=0.079  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHH
Q 039943          138 QLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTC  201 (581)
Q Consensus       138 ~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~  201 (581)
                      +-+..++..++.|+..|-.......+..+..++       ++|..+-.+...+..+|-.+|..+
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~-------~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDP-------HEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666778999999999988888888887665       557777777777777777777654

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=85.70  E-value=50  Score=34.66  Aligned_cols=57  Identities=16%  Similarity=0.122  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 039943          453 SAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFI  509 (581)
Q Consensus       453 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i  509 (581)
                      +-+|.++...++++..+-.......++.+..|++.+..+..+..+....|-+.|..+
T Consensus       342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~  398 (406)
T KOG1479|consen  342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL  398 (406)
T ss_pred             CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            445667777888888888888888888888888888777777777777776666655

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=84.79  E-value=9.5  Score=37.51  Aligned_cols=138  Identities=10%  Similarity=0.076  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccccCch---hhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHH
Q 039943           64 GTNVLLIWTAATNFLPIIGAFLADSCVGRY---PMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLM  140 (581)
Q Consensus        64 ~~~i~~~~~~~~~i~~~~~G~laDr~~Grr---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (581)
                      -|.+.+.|.++.++|.-+..++..|  .|.   +.+.+...+.+....+..+..+ .               +++++++.
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~--s~~~ve~ymqivf~vs~a~l~Lpilt~~-v---------------sP~kes~~  345 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSR--SSPKVESYMQIVFLVSIAALLLPILTSS-V---------------SPSKESPS  345 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhc--CCcccchHHHHHHHHHHHHHHHHHHHhc-c---------------CCCcCCch
Confidence            3778888888888888888888776  233   3344443333333322222221 0               11233444


Q ss_pred             HHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhc--cccchhhhHHH
Q 039943          141 LLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQD--NLGWKVGFGVP  218 (581)
Q Consensus       141 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~--~~g~~~~f~~~  218 (581)
                      .-+++..++-.+.|.++|....+=....|+       +.|++.++++..-.++-.-++-..-  =.+  ..+-|..|.++
T Consensus       346 ~s~i~F~~~E~cvGlfwPSimkmRsqyIPE-------earstimNfFRvPLnifvClvLynl--h~~~~p~~tr~mf~ic  416 (454)
T KOG4332|consen  346 ESLIGFCLFEACVGLFWPSIMKMRSQYIPE-------EARSTIMNFFRVPLNIFVCLVLYNL--HVDAFPTTTRNMFGIC  416 (454)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHhhCCH-------HHHhhhhhheechhhHhhhhhheec--ccccCccccchhhhhh
Confidence            456677777888899999999988888887       5699999988876665443221110  011  13566788887


Q ss_pred             HHHHHHHHHH
Q 039943          219 AVISLLSALS  228 (581)
Q Consensus       219 ~~~~~i~~~~  228 (581)
                      .+...++.+.
T Consensus       417 S~~~~~a~i~  426 (454)
T KOG4332|consen  417 SAFLFVASIL  426 (454)
T ss_pred             HHHHHHHHHH
Confidence            7766665443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=83.04  E-value=8.2  Score=39.94  Aligned_cols=75  Identities=16%  Similarity=0.276  Sum_probs=39.8

Q ss_pred             eecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh------hhhc-CCCCCCcCCCCCCchhHHHHHHHHHHHHHHH
Q 039943          478 FYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDE------ITKR-GGKEGWIPSNINKGRYDYYYWLLAGLNMASF  550 (581)
Q Consensus       478 ~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~------~~~~-~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~  550 (581)
                      .+..+..++..|-++.........|-+++..+.-.+..      ..+. +..++.+       ....++++.+.+.++..
T Consensus       157 wALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~I-------tL~gy~~fwg~~~~vat  229 (510)
T KOG3574|consen  157 WALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFI-------TLAGYLWFWGALFIVAT  229 (510)
T ss_pred             HHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceE-------EhhHHHHHHHHHHHHHH
Confidence            33445566667777766666666666666544332221      0110 1111221       23445677777777777


Q ss_pred             HHHhhhhcc
Q 039943          551 IYFLACCKA  559 (581)
Q Consensus       551 ~~~~~~~~~  559 (581)
                      ....++.++
T Consensus       230 ~Lv~~~kke  238 (510)
T KOG3574|consen  230 TLVALLKKE  238 (510)
T ss_pred             HHHHHhcCC
Confidence            776666554

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=80.26  E-value=19  Score=38.71  Aligned_cols=77  Identities=13%  Similarity=0.070  Sum_probs=43.2

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCc---CCCCCCchhHHHHHHHHHHHHHHHHHHhhhh
Q 039943          481 SELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWI---PSNINKGRYDYYYWLLAGLNMASFIYFLACC  557 (581)
Q Consensus       481 ~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~---~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~  557 (581)
                      .+..++.++-++..+......|-+++-.+.-.+.+..-..   .|+   |.+-.--....+..+.+.+.++..+...++.
T Consensus       145 T~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~N---ky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k  221 (544)
T PF13000_consen  145 TMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCN---KYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFK  221 (544)
T ss_pred             hhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHH---HhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEe
Confidence            3456777888888777777777777765555444321000   111   1111111244455667777777777777776


Q ss_pred             ccc
Q 039943          558 KAY  560 (581)
Q Consensus       558 ~~~  560 (581)
                      +|.
T Consensus       222 ~E~  224 (544)
T PF13000_consen  222 KEK  224 (544)
T ss_pred             ecc
Confidence            663

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	581
2xut_A	524	Proton/peptide symporter family protein; transport	6e-95
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  299 bits (767), Expect = 6e-95
 Identities = 93/564 (16%), Positives = 203/564 (35%), Gaps = 62/564 (10%)

Query: 26  RTLPFIIANEAFERMASMGLMPNMILYL------CGEYNMETTAGTNVLLIWTAATNFLP 79
           R +P+IIA+EA ER +  G+   +  +L           +      +V   +     F P
Sbjct: 12  RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP 71

Query: 80  IIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQL 139
           ++G ++AD   G+Y  I +  + Y +G   L +                          +
Sbjct: 72  LLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE----------------------HSV 109

Query: 140 MLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAV 199
              Y+ L L++LG GGI+    +F  +Q ++ +++ ++ A    F  +Y ++   S  A 
Sbjct: 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA----FDMFYFTINFGSFFAS 165

Query: 200 TCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKN 259
             +  +  N G  V FG+P V+  ++ + F+L    Y+          G + V+ ++   
Sbjct: 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLT 225

Query: 260 RHIKLSSQT----TEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWS 315
           +     +                 + +     +  L  A ++      +    +      
Sbjct: 226 KVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARK 285

Query: 316 LCTVDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFPVLQASTMDRHITPNFEIPSGSFG 374
                 V+ ++++++++ L++          Q +S  +LQA+ M +              
Sbjct: 286 SHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP----QWFEPAMMQ 341

Query: 375 IFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRR 434
               + V+L I F + +L P   ++  K   L   ++MG G+  +  S       + +  
Sbjct: 342 ALNPLLVMLLIPFNNFVLYPAIERMGVKLTAL---RKMGAGIAITGLSWIVVGTIQLMMD 398

Query: 435 NIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASAL 494
                            +S  W +  + L            +EF YS+ P++M     + 
Sbjct: 399 G-------------GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSF 445

Query: 495 HGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFL 554
             L ++V +L       +V   T     E  + + ++   +  +++  AG  + + I F 
Sbjct: 446 WTLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQMFFF--AGFAILAAIVFA 500

Query: 555 ACCKAYGPCREEASEALDEKDGME 578
              ++Y            E    +
Sbjct: 501 LYARSYQMQDHYRQATGSENLYFQ 524

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 35/217 (16%), Positives = 82/217 (37%), Gaps = 33/217 (15%)

Query: 26  RTLPFIIANEAFERMASMGLMPNMILYLC-----GEYNMETTAGTNVLLIWTAATNFLPI 80
             L  +   E +ER +  G+   ++ Y+      G+ ++      +++ I+ +       
Sbjct: 13  LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72

Query: 81  IGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLM 140
           IG F+AD  +G  P + +G +  +LG ++L                       A      
Sbjct: 73  IGGFVADRIIGARPAVFWGGVLIMLGHIVL-----------------------ALPFGAS 109

Query: 141 LLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVT 200
            L+ ++ L+ +G G ++ +         ++ D  +  G     FS +   +   + +A  
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG-----FSIFVFGINLGAFIAPL 164

Query: 201 CIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYV 237
            +   Q+  G+ V F + A+   +  L ++      +
Sbjct: 165 IVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTL 201

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 7e-08
 Identities = 55/395 (13%), Positives = 118/395 (29%), Gaps = 106/395 (26%)

Query: 68  LLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQA--QPPACD 125
            L WT  +    ++  F+ +     Y                 +L + +     QP    
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYK----------------FLMSPIKTEQRQPSMMT 109

Query: 126 QLRSDCESATWSQLMLL----------YSAL--GLMSL---------GGGGIRSSSLAFG 164
           ++  +     ++   +           Y  L   L+ L         G  G   + +A  
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-- 167

Query: 165 AEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKV----------G 214
            +          K   +  F  +++++   +  +   ++ +   L +++           
Sbjct: 168 LDVC-----LSYKVQCKMDFKIFWLNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 215 FGVPAVI-SLLSALSFFLASPFYVQSKANTSLL-------TGLI-------QVLVASYKN 259
             +   I S+ + L   L S  Y        LL                  ++L+ + + 
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYEN-----CLLVLLNVQNAKAWNAFNLSCKILLTT-RF 274

Query: 260 RHI--KLSSQTTEE--MYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWS 315
           + +   LS+ TT    + H       L P E    L K   +    QD   +   +NP  
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLK--YLDCRPQDLPREVLTTNPRR 329

Query: 316 LCTVDQVEELKALIKVIPLWST-GIMIAVTISQSSFPVLQASTMDRHITPNFEIPSGSFG 374
           L  +   E ++  +     W         TI +SS  VL+ +   +     F+       
Sbjct: 330 LSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM----FD----RLS 379

Query: 375 IF---TIIT----VILWIGFYDRILQPIASKIRGK 402
           +F     I      ++W       +  + +K+   
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	581
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.88
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.87
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.49
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.43
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.37
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.19
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.89
2xut_A	524	Proton/peptide symporter family protein; transport	98.19

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=2.3e-30  Score=279.23  Aligned_cols=446  Identities=16%  Similarity=0.222  Sum_probs=290.5

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhh-----cCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhh
Q 039943           21 PKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGE-----YNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPM   95 (581)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~   95 (581)
                      .++++|.++.+.+..++..+++|++..+++.|++++     +|++..+.+++.+++.++..++.+++|+++||++|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~   87 (491)
T 4aps_A            8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA   87 (491)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            345677888888999999999999999999999988     999999999999999999999999999999992299999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcc
Q 039943           96 IGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENK  175 (581)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~  175 (581)
                      +..+.++..++.+++++++                       +.+.++++|++.|++.+...+...++++|++|+++   
T Consensus        88 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---  141 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALPF-----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD---  141 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCC-----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT---
T ss_pred             HHHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc---
Confidence            9999999999999998877                       67789999999999999999999999999999855   


Q ss_pred             cchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCccccc---CCCC-ChhhhHHH
Q 039943          176 SKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQS---KANT-SLLTGLIQ  251 (581)
Q Consensus       176 ~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~~~~~~~  251 (581)
                        +.|+.++++++.+.++|..++|.+++++.+..||++.|++.++..+++.+...+..++..++   +++. ...++..+
T Consensus       142 --~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (491)
T 4aps_A          142 --RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP  219 (491)
T ss_dssp             --THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH
T ss_pred             --ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHH
Confidence              45888999999999999999999999999999999999998877766665554433222111   1111 11111111


Q ss_pred             HHHH--------------HHhhccccccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCcc
Q 039943          252 VLVA--------------SYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLC  317 (581)
Q Consensus       252 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (581)
                      ....              .....+.+..  +......      .........+.  ....++.                 
T Consensus       220 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~--~~~~~~~-----------------  272 (491)
T 4aps_A          220 LLVKVSLAVAGFIAIIVVMNLVGWNSLP--AYINLLT------IVAIAIPVFYF--AWMISSV-----------------  272 (491)
T ss_dssp             HHHHCCCCCHHHHHHHHHHHHHSSCCTT--HHHHHHH------HHHHHHHHHHH--HHHC--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcccc--cchhhhh------HHHHHHHHHHH--HHHhhcc-----------------
Confidence            0000              0000000000  0000000      00000000000  0000000                 


Q ss_pred             chhhHHHHHhHHhhHhHHHhhHHHHHhhcC-CChh-heecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhH
Q 039943          318 TVDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFP-VLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPI  395 (581)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (581)
                       .....++++......+++....++..+.+ .... .+.....+...     ...........+..++..++.+    ++
T Consensus       273 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~l  342 (491)
T 4aps_A          273 -KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-----FPVSWFQSLNPLFIMLYTPFFA----WL  342 (491)
T ss_dssp             ----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-----SCSGGGTTHHHHHHHHHHHHHH----HH
T ss_pred             -cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-----cCHHHHhccchHHHHHHHHHHH----HH
Confidence             00001223333333344444444554544 2221 11111111111     2233444555555555555544    46


Q ss_pred             hhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhh
Q 039943          396 ASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQ  475 (581)
Q Consensus       396 ~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  475 (581)
                      .+|+++|+  ....+.+..+.++.++++++........             +.....+.++..+.+++.+++.+...+..
T Consensus       343 ~~r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  407 (491)
T 4aps_A          343 WTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALY-------------GTSGKVSPLWLVGSWALVILGEMLISPVG  407 (491)
T ss_dssp             HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHC-------------CCCTTCCTHHHHHHHHHHHHHHHTTTTHH
T ss_pred             HHHHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHhc-------------CCCCCccHHHHHHHHHHHHHHHHHHhHHH
Confidence            77877774  4556667788888888877665543210             00112356677778889999999999999


Q ss_pred             heeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 039943          476 IEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLA  555 (581)
Q Consensus       476 ~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~  555 (581)
                      +.++.+.+|++.||+++|+.+....+|+.+++.+.+.+.+.                 ++...|.+++++++++.+++++
T Consensus       408 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~  470 (491)
T 4aps_A          408 LSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVF  470 (491)
T ss_dssp             HHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998877642                 2356788888888888888888


Q ss_pred             hhcccccc
Q 039943          556 CCKAYGPC  563 (581)
Q Consensus       556 ~~~~~~~~  563 (581)
                      +.++.+++
T Consensus       471 ~~~~~~~~  478 (491)
T 4aps_A          471 LSKRIQGL  478 (491)
T ss_dssp             C-------
T ss_pred             HHHHHHHH
Confidence            77765554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=2.5e-30  Score=281.27  Aligned_cols=472  Identities=20%  Similarity=0.320  Sum_probs=284.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcC------CcchhhHHHHHHHHHHHHHHHHHHHHhhcccc-Cchhh
Q 039943           23 GGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYN------METTAGTNVLLIWTAATNFLPIIGAFLADSCV-GRYPM   95 (581)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~-Grr~~   95 (581)
                      +++|.++.+.+..++..+++|++..+++.|+++++|      ++..+.+++.+++.++..++.+++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~   87 (524)
T 2xut_A            9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNT   87 (524)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHH
Confidence            345566778888999999999999999999999999      999999999999999999999999999999 8 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcc
Q 039943           96 IGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENK  175 (581)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~  175 (581)
                      +.++.++..++.++++++.                      .+.+.+++.|++.|++.+...+...++++|++|++++  
T Consensus        88 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r--  143 (524)
T 2xut_A           88 ILWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK--  143 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTS----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT--
T ss_pred             HHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch--
Confidence            9999999999998888764                      0467788999999999999999999999999998442  


Q ss_pred             cchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHH
Q 039943          176 SKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVA  255 (581)
Q Consensus       176 ~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (581)
                        .++...+++++.+.++|..++|.+++++.+..||++.|++.+++.+++.+.+.+..++.+++++++++..+..+.+..
T Consensus       144 --~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (524)
T 2xut_A          144 --SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS  221 (524)
T ss_dssp             --THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHH
Confidence              223455666889999999999999999998899999999988877766665554444332222222111111111111


Q ss_pred             HHhhccccccCcc--------ccccccCCCCCcc--c-----------cCCcchhh--hhhhhhccCCCCCCCCCCCCCC
Q 039943          256 SYKNRHIKLSSQT--------TEEMYHPRKGSML--L-----------VPSENLRC--LNKACIIKHPGQDSTPDRRASN  312 (581)
Q Consensus       256 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~-----------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  312 (581)
                      ..++++.+.+...        .............  .           +...+..+  .+..+..               
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  286 (524)
T 2xut_A          222 ALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKS---------------  286 (524)
T ss_dssp             -----CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCS---------------
T ss_pred             HHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhcc---------------
Confidence            1111100000000        0000000000000  0           00000000  0000000               


Q ss_pred             CCCccchhhHHHHHhHHhhHhHHHhhHHHHHhhcC-CChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccch
Q 039943          313 PWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRI  391 (581)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (581)
                          ......++.++......++.....++..+.+ .+.+..+....+...   + .+...+...+.+..++..++.+++
T Consensus       287 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~  358 (524)
T 2xut_A          287 ----HPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFV  358 (524)
T ss_dssp             ----CCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC
T ss_pred             ----ccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhh
Confidence                0000011233344444444444555555555 444444333222211   1 123344455566667777888877


Q ss_pred             hhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 039943          392 LQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFN  471 (581)
Q Consensus       392 ~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  471 (581)
                      ..+..+|.++|   .+..+.+.+|.++.++++++........             ......+.+++++.+++.+++++..
T Consensus       359 ~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~g~~~~~~  422 (524)
T 2xut_A          359 LYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM-------------DGGSALSIFWQILPYALLTFGEVLV  422 (524)
T ss_dssp             ---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT-------------TTTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh-------------cCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            66666776555   5666777888888877776554321000             0001235566777889999999999


Q ss_pred             hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCC-CCCCchhHHHHHHHHHHHHHHH
Q 039943          472 MIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPS-NINKGRYDYYYWLLAGLNMASF  550 (581)
Q Consensus       472 ~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~a~~~~~~~  550 (581)
                      .+..++++.+.+|++.||+++|+.++...+|+.+++.+.+.+.+..+.    +|.+. +.  +.....|++.+++++++.
T Consensus       423 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~  496 (524)
T 2xut_A          423 SATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVT----EQIVQTGM--SVTAFQMFFFAGFAILAA  496 (524)
T ss_dssp             HHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHH----HHHHHHHS--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccc----cccccccc--cccccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988753210    23210 00  001233778888888888


Q ss_pred             HHHhhhhccccccccc
Q 039943          551 IYFLACCKAYGPCREE  566 (581)
Q Consensus       551 ~~~~~~~~~~~~~~~~  566 (581)
                      ++++++.+++++++.+
T Consensus       497 ~~~~~~~~~~~~~~~~  512 (524)
T 2xut_A          497 IVFALYARSYQMQDHY  512 (524)
T ss_dssp             HHHC------------
T ss_pred             HHHHHHHHHhccchhh
Confidence            8888877776655443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=9.8e-28  Score=258.44  Aligned_cols=420  Identities=10%  Similarity=0.026  Sum_probs=234.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhH
Q 039943           60 ETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQL  139 (581)
Q Consensus        60 s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (581)
                      +..+.+++.+++.++..++++++|+++|| +|||++++++.+++.++.++++++.........     .......-..++
T Consensus        53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~-----~~~~~~~~a~~~  126 (491)
T 4gc0_A           53 ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINP-----DNTVPVYLAGYV  126 (491)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS-----SSSCCGGGGGCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----hhHHHHHHhhhH
Confidence            34567899999999999999999999999 799999999999999999999864311000000     000000012278


Q ss_pred             HHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhcc--------ccc
Q 039943          140 MLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDN--------LGW  211 (581)
Q Consensus       140 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~--------~g~  211 (581)
                      +.++++|+++|+|.|+..+..+++++|..|+       ++|++..++.+.+..+|..+++.++..+...        .+|
T Consensus       127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  199 (491)
T 4gc0_A          127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW  199 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence            8999999999999999999999999999998       7899999999999999999998877665432        347


Q ss_pred             hhhhHHHHHHHHHHHHHHHhcCC--cccccCCCCChhhhHHHHHHHHHhhccccccCccccccccCCCCCccccCCcchh
Q 039943          212 KVGFGVPAVISLLSALSFFLASP--FYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLR  289 (581)
Q Consensus       212 ~~~f~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (581)
                      ++.+.+..+..++.++.....++  ++...+.+.+...   +.+.....+...+..      .            .+...
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~---~~l~~~~~~~~~~~~------~------------~~~~~  258 (491)
T 4gc0_A          200 RYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAE---GILRKIMGNTLATQA------V------------QEIKH  258 (491)
T ss_dssp             HHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHH---HHHHHHHHHHHHHHH------H------------HHHHH
T ss_pred             HHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHH---HhHHHhcCCchhHHH------H------------HHHHH
Confidence            76666665554444433332221  1111111111111   111111110000000      0            00000


Q ss_pred             hhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHH-HhhcC-CChhheecccCCCCCCCCcc
Q 039943          290 CLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIA-VTISQ-SSFPVLQASTMDRHITPNFE  367 (581)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~  367 (581)
                      .....+..              ..     .......++.........++.... ..... .+.. .+....+.       
T Consensus       259 ~~~~~~~~--------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------  311 (491)
T 4gc0_A          259 SLDHGRKT--------------GG-----RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEV-FKTLGAST-------  311 (491)
T ss_dssp             HHHHHHHH--------------TT-----HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHSSCCH-------
T ss_pred             HHHhhhhh--------------hh-----HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHH-HHhcCCCc-------
Confidence            00000000              00     000000111111111111111000 00000 1111 11000000       


Q ss_pred             cCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 039943          368 IPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPR  447 (581)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  447 (581)
                      ...........+..++.    ..+...+.||+|||       +.+..+...++++++..+.....               
T Consensus       312 ~~~~~~~~~~~~~~~~~----~~~~~~l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~~---------------  365 (491)
T 4gc0_A          312 DIALLQTIIVGVINLTF----TVLAIMTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFYT---------------  365 (491)
T ss_dssp             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred             cchhhHHHHHHHHHHHH----HHHHHHHHHhhcCc-------chhccchHHHHHHHHHHHHHHhc---------------
Confidence            00001111111122222    22344577887777       46667777777666655543320               


Q ss_pred             CcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcC
Q 039943          448 AVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIP  527 (581)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~  527 (581)
                        .......++...++.........|..+.+..|.+|.+.|++++|+.+.++++++++++.+.|.+.+.....       
T Consensus       366 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~-------  436 (491)
T 4gc0_A          366 --QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV-------  436 (491)
T ss_dssp             --TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH-------
T ss_pred             --ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence              01122222222222222233345667788999999999999999999999999999999888776532100       


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhhhccCcc
Q 039943          528 SNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCREEASEALDEKDGME  578 (581)
Q Consensus       528 ~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (581)
                         ...+....|++++++++++.++.+++.||+|+|+.||.|++++++..+
T Consensus       437 ---~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~  484 (491)
T 4gc0_A          437 ---AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKK  484 (491)
T ss_dssp             ---HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-----
T ss_pred             ---hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcc
Confidence               000124468899999999999999999999999999999998765444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.95  E-value=2.2e-27  Score=252.34  Aligned_cols=397  Identities=11%  Similarity=0.004  Sum_probs=250.2

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      ++.++...+..++..+..+.+.+.++. +.+++ .+..+.+++.+++.++..++.++.|+++|| +|||+++.++.++.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPY-LVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHH-TTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHH
Confidence            344455555666666666655666654 44577 999999999999999999999999999999 799999999999999


Q ss_pred             HHHHHHHH----hhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhh
Q 039943          105 LGVVLLWL----TTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGAL  180 (581)
Q Consensus       105 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r  180 (581)
                      ++.+++++    +.                       +++.++++|++.|++.+...+...++++|.+|+       ++|
T Consensus       104 ~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r  153 (451)
T 1pw4_A          104 AVMLFMGFVPWATS-----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KER  153 (451)
T ss_dssp             HHHHHHHHCHHHHS-----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THH
T ss_pred             HHHHHHHhhhhccc-----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------hhh
Confidence            99999998    66                       677899999999999999999999999999998       679


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhhhcccc-chhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhh
Q 039943          181 QSYFSWYYVSVLASSMVAVTCIVYIQDNLG-WKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKN  259 (581)
Q Consensus       181 ~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (581)
                      ++++++.+.+.++|..++|.+++++.+..| |++.|++.+++.++..+...+..++.++.+...+. +            
T Consensus       154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------  220 (451)
T 1pw4_A          154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E------------  220 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h------------
Confidence            999999999999999999999999888888 99999998887766555443333321111100000 0            


Q ss_pred             ccccccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhH-HHhh
Q 039943          260 RHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPL-WSTG  338 (581)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  338 (581)
                       .  ..+ .    .+.+.       .       .     +++        ...+++..........+.+...... +...
T Consensus       221 -~--~~~-~----~~~~~-------~-------~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (451)
T 1pw4_A          221 -E--YKN-D----YPDDY-------N-------E-----KAE--------QELTAKQIFMQYVLPNKLLWYIAIANVFVY  265 (451)
T ss_dssp             -T--TCC-C--------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             -h--hcc-c----ccccc-------h-------h-----hhh--------cccccccchHHHHHcCHHHHHHHHHHHHHH
Confidence             0  000 0    00000       0       0     000        0001100000000001111111111 1111


Q ss_pred             HHHHHhhcCCChhheecccCCCCCCCCcccCcccccc---hhhHHHHHHhhhccchhhhHhhhh--cCCCCCCCchHHHH
Q 039943          339 IMIAVTISQSSFPVLQASTMDRHITPNFEIPSGSFGI---FTIITVILWIGFYDRILQPIASKI--RGKPCQLRLKQRMG  413 (581)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~--~~r~~~~~~~~~~~  413 (581)
                      ..........+.++.+      ..+    .+....+.   ...+..++..+    +..++.+|+  ++|       +.+.
T Consensus       266 ~~~~~~~~~~~~~~~~------~~g----~~~~~~~~~~~~~~~~~~~~~~----~~g~l~~~~~~~~~-------~~~~  324 (451)
T 1pw4_A          266 LLRYGILDWSPTYLKE------VKH----FALDKSSWAYFLYEYAGIPGTL----LCGWMSDKVFRGNR-------GATG  324 (451)
T ss_dssp             HHHHHHHHHHHHHBTT------BSC----CCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTSTTCH-------HHHH
T ss_pred             HHHHHHHHHHHHHHHH------hcC----CCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCc-------hhHH
Confidence            1111111112222211      111    12211121   22222222222    334466665  333       4454


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHH
Q 039943          414 IGLLFST-ASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIAS  492 (581)
Q Consensus       414 ~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~  492 (581)
                      ++.++.. ++++.+...                    ...+.+......++.+++.....+....++.+.+|++.|+++.
T Consensus       325 ~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~  384 (451)
T 1pw4_A          325 VFFMTLVTIATIVYWMN--------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA  384 (451)
T ss_dssp             HHHHHHHHHHHHHTTSC--------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh--------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHH
Confidence            5544443 444333221                    0124455566667777777777888888999999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 039943          493 ALHGLGMSV-ASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKA  559 (581)
Q Consensus       493 g~~~~~~~i-g~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~  559 (581)
                      |+.+....+ |..+++.+.+.+.+..                ++...|++.+++++++.++.++..++
T Consensus       385 ~~~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~  436 (451)
T 1pw4_A          385 GFTGLFGYLGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMIG  436 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999 9999999999887642                24778888888888888777666543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=5.1e-25  Score=233.31  Aligned_cols=177  Identities=13%  Similarity=0.065  Sum_probs=146.8

Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHH
Q 039943           22 KGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCI  101 (581)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~  101 (581)
                      +++++.+..+.+..++..+......+.+ +++.+++|++..+.+++.+++.++..++.++.|+++|| +|||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHH
Confidence            3344445555555555655555444444 45778999999999999999999999999999999999 799999999999


Q ss_pred             HHHHHHHHH---HHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccch
Q 039943          102 TYLLGVVLL---WLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKG  178 (581)
Q Consensus       102 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~  178 (581)
                      +.+++.+++   .+++                       +++.++++|++.|++.+...+...++++|.+|+       +
T Consensus       100 ~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~  149 (438)
T 3o7q_A          100 LYALGAALFWPAAEIM-----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------S  149 (438)
T ss_dssp             HHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS-------T
T ss_pred             HHHHHHHHHHhccccc-----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc-------h
Confidence            999999988   5555                       788999999999999999999999999999998       6


Q ss_pred             hhhHHHHHHHHHHhhHHHHHHHHHHhhh-cccc-------------------------chhhhHHHHHHHHHHHHHHH
Q 039943          179 ALQSYFSWYYVSVLASSMVAVTCIVYIQ-DNLG-------------------------WKVGFGVPAVISLLSALSFF  230 (581)
Q Consensus       179 ~r~~~~~~~~~~~~~g~~~~p~~~~~i~-~~~g-------------------------~~~~f~~~~~~~~i~~~~~~  230 (581)
                      +|++.+++.+.+.++|..++|.+++++. +..+                         |++.|++.+++.++..+..+
T Consensus       150 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  227 (438)
T 3o7q_A          150 SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM  227 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999988 5544                         89999877766555444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.88  E-value=2.5e-22  Score=208.39  Aligned_cols=166  Identities=17%  Similarity=0.228  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHH
Q 039943           30 FIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVL  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~  109 (581)
                      .+.+..++..+......+.++. +.+++|.+..+.+++.+++.++..++.++.|+++|| +|||+++..+.++..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHH
Confidence            3445555666665555666655 457899999999999999999999999999999999 79999999999999999999


Q ss_pred             HHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHH
Q 039943          110 LWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYV  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  189 (581)
                      +.+++                       +.+.+++.|++.|++.+...+...+++.|.+|+       ++|++.+++.+.
T Consensus        82 ~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  131 (375)
T 2gfp_A           82 AVTTS-----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYER-------TQLRHANSLLNM  131 (375)
T ss_dssp             HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SSCCSHHHHHHH
T ss_pred             HHHhc-----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH-------HHHHHHHHHHHH
Confidence            99987                       788899999999999999999999999999998       569999999999


Q ss_pred             HHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHH
Q 039943          190 SVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSAL  227 (581)
Q Consensus       190 ~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~  227 (581)
                      ..++|..++|.+++++.+..||++.|++.++..++..+
T Consensus       132 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888999999987776555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.87  E-value=3.5e-22  Score=211.01  Aligned_cols=387  Identities=10%  Similarity=0.019  Sum_probs=217.3

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      |..+...+..++..+.+....++++.|+++++|++..+.+++.+++.++..++++++|+++|| +||||+++++.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH
Confidence            445555565666666666778899999998999999999999999999999999999999999 7999999998877655


Q ss_pred             HHHHH---HHhhhcccCCCCcccccccccccccchhH-HHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhh
Q 039943          106 GVVLL---WLTTILSQAQPPACDQLRSDCESATWSQL-MLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQ  181 (581)
Q Consensus       106 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~  181 (581)
                      +...+   .++.                       .. ..++..+++.+++.+...+.......+..++..     ++++
T Consensus        86 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~  137 (417)
T 2cfq_A           86 MFAPFFIFIFGP-----------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-----RRSN  137 (417)
T ss_dssp             CHHHHHHHTHHH-----------------------HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-----HHHT
T ss_pred             HHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-----hhcc
Confidence            32211   1221                       00 012334555555544444444444444433211     3456


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhcc
Q 039943          182 SYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRH  261 (581)
Q Consensus       182 ~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (581)
                      ..++..+...++|..++|.+++++.+ .+|++.|++.++..++..+......+    ++++..+                
T Consensus       138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~----~~~~~~~----------------  196 (417)
T 2cfq_A          138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKT----DAPSSAT----------------  196 (417)
T ss_dssp             CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCC----CCSCSSC----------------
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCc----ccccccc----------------
Confidence            66777777788999999999999876 58999998776654333322221111    1110000                


Q ss_pred             ccccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHH
Q 039943          262 IKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMI  341 (581)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (581)
                        ..+ . +   +. +       .+                        +.+++.  .......+...............
T Consensus       197 --~~~-~-~---~~-~-------~~------------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  235 (417)
T 2cfq_A          197 --VAN-A-V---GA-N-------HS------------------------AFSLKL--ALELFRQPKLWFLSLYVIGVSCT  235 (417)
T ss_dssp             --SSS-S-S---SS-C-------CC------------------------CCCHHH--HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             --ccc-c-c---cc-c-------cc------------------------cccHHH--HHHHhcCCchhhHHHHHHHHHHH
Confidence              000 0 0   00 0       00                        000000  00000011111111111111111


Q ss_pred             HHhhcC-CChhheecccCCCCCCCCcccCcccccc---hhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHH
Q 039943          342 AVTISQ-SSFPVLQASTMDRHITPNFEIPSGSFGI---FTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLL  417 (581)
Q Consensus       342 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~  417 (581)
                      +..+.+ .+.++.+  .....     .......+.   ++.+..++.    ..+..++.||+++|       +.+..+.+
T Consensus       236 ~~~~~~~~~~~~~~--~~~~~-----~~~~~~~g~~~~~~~~~~~~~----~~~~g~l~dr~g~~-------~~l~~~~~  297 (417)
T 2cfq_A          236 YDVFDQQFANFFTS--FFATG-----EQGTRVFGYVTTMGELLNASI----MFFAPLIINRIGGK-------NALLLAGT  297 (417)
T ss_dssp             HHHHHHHHHHHHHH--TSSSH-----HHHTHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--HHhcc-----CCChhHHHHHHHHHHHHHHHH----HHHHHHHHHHhcHH-------HHHHHHHH
Confidence            111222 2222211  11100     001111111   111111222    22344567776554       45666666


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHH-HH
Q 039943          418 FSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASAL-HG  496 (581)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~  496 (581)
                      +.+++++....                      ..+.+.++...++.+++.....+..+.++.|..|++.||++.++ .+
T Consensus       298 ~~~~~~~~~~~----------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~  355 (417)
T 2cfq_A          298 IMSVRIIGSSF----------------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFC  355 (417)
T ss_dssp             HHHHHHHHHTT----------------------CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH----------------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            66665544322                      11333444444555666666666677889999999999999998 48


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 039943          497 LGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKA  559 (581)
Q Consensus       497 ~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~  559 (581)
                      ..+.+|+++++.+.+.+.+..                ++...|.+.+++++++.+..++..++
T Consensus       356 ~~~~lg~~~gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          356 FFKQLAMIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             TTHHHHHHHHTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHhHHHHHhhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            888999999999999887632                35677888888888888776666554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.49  E-value=3.5e-13  Score=142.53  Aligned_cols=177  Identities=16%  Similarity=0.167  Sum_probs=150.2

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc--CchhhHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCV--GRYPMIGFGCITY  103 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~--Grr~~~~~~~~~~  103 (581)
                      |.++...+..++..+.++++..+++.|+++.+|++..+.+++.+...++..++.++.|+++|| +  |||+.+..+.++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL  330 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence            456677777788888888999999999998899999999999999999999999999999999 8  9999988887766


Q ss_pred             H-HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhH
Q 039943          104 L-LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS  182 (581)
Q Consensus       104 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (581)
                      . ++.+++.+..                     +.+.+.+++..++.|++.+...+...+++.|.+|+       +.|++
T Consensus       331 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~  382 (451)
T 1pw4_A          331 VTIATIVYWMNP---------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGT  382 (451)
T ss_dssp             HHHHHHHTTSCC---------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHH
T ss_pred             HHHHHHHHHHhc---------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-------hhhhh
Confidence            6 5555554432                     11456677778889999888888889999999998       67999


Q ss_pred             HHHHHHHHHhh-HHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh
Q 039943          183 YFSWYYVSVLA-SSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       183 ~~~~~~~~~~~-g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      ++++.+...++ |..++|.+.|++.+..||+..|++.+++.+++.+..++
T Consensus       383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999 99999999999999999999999988877776655544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.43  E-value=2.6e-12  Score=135.34  Aligned_cols=168  Identities=13%  Similarity=0.045  Sum_probs=138.4

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHH-hhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILY-LCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      |.++...+..++.....+++..+++.| +++.+|++..+++++.+++.++..++.++.|+++|| +|||+++..+.++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAM  336 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence            455666666777777788888999999 888889999999999999999999999999999999 799999999998888


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      ++.++..+.+                       +...+ ...++.|++.+...|...++..|.+|+       + ++.+.
T Consensus       337 ~~~~~~~~~~-----------------------~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~-~~~~~  384 (438)
T 3o7q_A          337 ALCLISAFAG-----------------------GHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQ-------D-TKYGS  384 (438)
T ss_dssp             HHHHHHHHCC-----------------------HHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGG-------G-HHHHH
T ss_pred             HHHHHHHHcC-----------------------CcHHH-HHHHHHHHHHHHHHHHHHHHHHhhccc-------c-ccchh
Confidence            8887777765                       33333 334788899999999999999999886       3 66666


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhhcccc-chhhhHHHHHHHHHHHH
Q 039943          185 SWYYVSVLASSMVAVTCIVYIQDNLG-WKVGFGVPAVISLLSAL  227 (581)
Q Consensus       185 ~~~~~~~~~g~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~i~~~  227 (581)
                      ++.. ...+|..++|.+.|++.+..| ++..|++.+++.++..+
T Consensus       385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            6655 567999999999999999988 99999987665554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.37  E-value=3.4e-12  Score=134.26  Aligned_cols=174  Identities=7%  Similarity=-0.015  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCC---cchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           28 LPFIIANEAFERMASMGLMPNMILYLCGEYNM---ETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      ++...+..+.....++....++|.|+.+.++.   +..+.++..++..++..++.++.|+++|| +|||+++..+.++.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~  300 (417)
T 2cfq_A          222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMS  300 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHH
Confidence            33333333333444445556688888766553   34555777777788888999999999999 799999998888877


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      ++.++.++..                       +.+.+++...+.+++.+...+...++++|.+|+       +.|++++
T Consensus       301 ~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~  350 (417)
T 2cfq_A          301 VRIIGSSFAT-----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIY  350 (417)
T ss_dssp             HHHHHHTTCC-----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHH
T ss_pred             HHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHH
Confidence            7766665544                       455566666777777777777778899999998       7799999


Q ss_pred             HHH-HHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhc
Q 039943          185 SWY-YVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLA  232 (581)
Q Consensus       185 ~~~-~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~  232 (581)
                      +.. +....+|..++|.++|++.+..|+...|.+.+++.+++.+..+..
T Consensus       351 g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  399 (417)
T 2cfq_A          351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT  399 (417)
T ss_dssp             HHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence            884 677789999999999999988889889988887777766554443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.19  E-value=1.2e-10  Score=124.57  Aligned_cols=185  Identities=10%  Similarity=0.001  Sum_probs=139.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH-----HHHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIG-----FGCI  101 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~-----~~~~  101 (581)
                      ..+.+.+..++....+.....+++.|+.+.++.+..+.+++.+...++..++.++.|++.|| +|||+...     .+.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~  362 (491)
T 4aps_A          284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLM  362 (491)
T ss_dssp             THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHH
Confidence            34555555666677777788889999998888887888889999999999999999999999 79987665     6666


Q ss_pred             HHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhh
Q 039943          102 TYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQ  181 (581)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~  181 (581)
                      +..++.+++.+......              ...+.+.+.+....++.|++.+...+...+++.|.+|+       +.|+
T Consensus       363 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-------~~~g  421 (491)
T 4aps_A          363 FAGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK-------AFNS  421 (491)
T ss_dssp             HHHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-------TCSS
T ss_pred             HHHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------HHHH
Confidence            66666665555431100              00112456677788899999999999999999999998       6699


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCC
Q 039943          182 SYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASP  234 (581)
Q Consensus       182 ~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~  234 (581)
                      ++.++.+...++|..++|.+.+++.+ .++.+.|.+.+++.+++.+..++..+
T Consensus       422 ~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          422 QMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998876 46777888777776666655555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.00  E-value=1.4e-08  Score=108.50  Aligned_cols=179  Identities=9%  Similarity=0.073  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHH
Q 039943           31 IIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLL  110 (581)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~  110 (581)
                      .....++..+..+....+..+++.+..+.+..+......+..+...++.++++++.|| +|||+.++.+.....++.+.+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l  359 (491)
T 4gc0_A          281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSL  359 (491)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHH
Confidence            3333334434333334444455666788888888888888889999999999999999 799999999988888877666


Q ss_pred             HHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHH
Q 039943          111 WLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVS  190 (581)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  190 (581)
                      +......                 .+..........+..+++. +..|..+.+.+|.+|.       +.|+++.++.+..
T Consensus       360 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt-------~~R~~~~g~~~~~  414 (491)
T 4gc0_A          360 GTAFYTQ-----------------APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPN-------AIRGKALAIAVAA  414 (491)
T ss_dssp             HHHHHTT-----------------CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCT-------TTHHHHHHHHHHH
T ss_pred             HHHHhcc-----------------cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCH-------hHHHHHHHHHHHH
Confidence            5543111                 0111222222222223332 3446778999999999       6799999999999


Q ss_pred             HhhHHHHHHHHHHhhhc------cccchhhhHHHHHHHHHHHHHHHhcCCc
Q 039943          191 VLASSMVAVTCIVYIQD------NLGWKVGFGVPAVISLLSALSFFLASPF  235 (581)
Q Consensus       191 ~~~g~~~~p~~~~~i~~------~~g~~~~f~~~~~~~~i~~~~~~~~~~~  235 (581)
                      ..+++.+++.+.+.+.+      ..++.+.|++.+++.+++.+..++..|+
T Consensus       415 ~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE  465 (491)
T 4gc0_A          415 QWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE  465 (491)
T ss_dssp             HHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence            99999988877766543      2456667777777777776655555444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.89  E-value=4.6e-10  Score=115.70  Aligned_cols=162  Identities=8%  Similarity=-0.058  Sum_probs=125.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH-HHH
Q 039943           27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCIT-YLL  105 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~-~~~  105 (581)
                      .++...+..++.....+++..++|.|+++.+|++..+.+++.+...++..++.++.|++.|| +|++  +..+... ...
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~~  276 (375)
T 2gfp_A          200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLLA  276 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHH
Confidence            35566666777777888888889999988899999999999999999999999999999999 6872  2233322 222


Q ss_pred             HHH--HHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943          106 GVV--LLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY  183 (581)
Q Consensus       106 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (581)
                      +..  ......                     +.+.+.+++..++.|++.+...+...+++.|.+|+        +|+++
T Consensus       277 ~~~~~~~~~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--------~~g~~  327 (375)
T 2gfp_A          277 GLLMWIPDWFG---------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPF--------LAGTA  327 (375)
T ss_dssp             SSSSSHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHH--------HHHHH
T ss_pred             HHHHHHHhhhc---------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCc--------ccchH
Confidence            222  122211                     11556677788889999999999999999999872        49999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHH
Q 039943          184 FSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAV  220 (581)
Q Consensus       184 ~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~  220 (581)
                      .++.+...++|..++|.+.+.+.+..+|...+.+.++
T Consensus       328 ~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~  364 (375)
T 2gfp_A          328 GALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM  364 (375)
T ss_dssp             HHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            9999999999999999999999887788877766443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.19  E-value=7.9e-07  Score=95.71  Aligned_cols=150  Identities=14%  Similarity=0.159  Sum_probs=94.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhh----ccccCc----hhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccc
Q 039943           63 AGTNVLLIWTAATNFLPIIGAFLA----DSCVGR----YPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESA  134 (581)
Q Consensus        63 ~~~~i~~~~~~~~~i~~~~~G~la----Dr~~Gr----r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (581)
                      ..+++.....++..++.++.+++.    || .|+    ++.+.++.++.+++.+++++.....              +..
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------------~~~  400 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIER-MGVKLTALRKMGAGIAITGLSWIVVGTIQLMM--------------DGG  400 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTT--------------TTT
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh--------------cCC
Confidence            355555555555556666666654    44 243    2456666666666666555432000              000


Q ss_pred             cchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccc--cc-
Q 039943          135 TWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNL--GW-  211 (581)
Q Consensus       135 ~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~--g~-  211 (581)
                      .+.+.+.++...++.|++.+...+...+++.|..|+       +.|+++.++.+...++|..++|.+.+.+.+..  +| 
T Consensus       401 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~  473 (524)
T 2xut_A          401 SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPK-------AMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQI  473 (524)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCT-------TCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            112456677788999999999999999999999998       66999999999999999999999999987642  23 


Q ss_pred             --------hhhhHHHHHHHHHHHHHHHhcCC
Q 039943          212 --------KVGFGVPAVISLLSALSFFLASP  234 (581)
Q Consensus       212 --------~~~f~~~~~~~~i~~~~~~~~~~  234 (581)
                              +..|++.+.+.+++.+..++..+
T Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (524)
T 2xut_A          474 VQTGMSVTAFQMFFFAGFAILAAIVFALYAR  504 (524)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence                    22366666655555554444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	581
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.91
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.35
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.32

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=6e-27  Score=245.45  Aligned_cols=161  Identities=13%  Similarity=0.038  Sum_probs=137.9

Q ss_pred             hhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcc
Q 039943           45 LMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPAC  124 (581)
Q Consensus        45 ~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (581)
                      ..+.+.++++ ++|+|.+|.+++.+++.++..++.++.|+++|| +|||+++.++.++..++.++++++.....      
T Consensus        43 ~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~------  114 (447)
T d1pw4a_          43 NFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATS------  114 (447)
T ss_dssp             SHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHHS------
T ss_pred             HHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHhhccccchhhh------
Confidence            3455666776 589999999999999999999999999999999 79999999999999999998888753222      


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHh
Q 039943          125 DQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVY  204 (581)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  204 (581)
                                   ++..+++.|++.|++.|...+...++++|.+|+       ++|++++++.+.+.++|..++|.+++.
T Consensus       115 -------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~~~~~  174 (447)
T d1pw4a_         115 -------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGIPPLLFLL  174 (447)
T ss_dssp             -------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             -------------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh-------hcccccccccccccchhhhhhhhhhhh
Confidence                         677899999999999999999999999999998       779999999999999999999998887


Q ss_pred             hhcc-ccchhhhHHHHHHHHHHHHHHHhcC
Q 039943          205 IQDN-LGWKVGFGVPAVISLLSALSFFLAS  233 (581)
Q Consensus       205 i~~~-~g~~~~f~~~~~~~~i~~~~~~~~~  233 (581)
                      +... .+|++.|++.+++.++..+..+...
T Consensus       175 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  204 (447)
T d1pw4a_         175 GMAWFNDWHAALYMPAFCAILVALFAFAMM  204 (447)
T ss_dssp             HHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred             HhhhhhcccccchhhhhhHHHHHHHHHHhc
Confidence            6654 4899999988877665555444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.1e-23  Score=213.97  Aligned_cols=402  Identities=11%  Similarity=-0.004  Sum_probs=237.6

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943           26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~  105 (581)
                      |..|.+.+..++..+......++++.|+++++|+|.++.|++.+++.++..++.++.|+++|| +||||+++++.++..+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence            456777777777777777778899999999999999999999999999999999999999999 7999999999998888


Q ss_pred             HHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHH
Q 039943          106 GVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFS  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (581)
                      +..++.+..+...                   .....+..+.+.+.+.+...+.......+..++.+     +++....+
T Consensus        86 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  141 (417)
T d1pv7a_          86 MFAPFFIFIFGPL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-----RRSNFEFG  141 (417)
T ss_dssp             THHHHHHHTHHHH-------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH-----HHHSCCHH
T ss_pred             HHHHHHHhhhhhh-------------------HHHHHHHHHHHhhhcccccccchhhcccccccchh-----hhhHHHHH
Confidence            8888777652111                   12223344444444444444444433333333322     34555666


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhcccccc
Q 039943          186 WYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRHIKLS  265 (581)
Q Consensus       186 ~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (581)
                      ........+..++|.+++++.+. +|+..+........+..+...+..++.+..+++++..+             . ...
T Consensus       142 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~  206 (417)
T d1pv7a_         142 RARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG-------------A-NHS  206 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH-------------S-CCC
T ss_pred             HHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh-------------h-hcc
Confidence            77777888999999999988764 45555555544444444333333332221111110000             0 000


Q ss_pred             CccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHHHhh
Q 039943          266 SQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIAVTI  345 (581)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (581)
                                         ..  ..........                    .   ...+.....  ............
T Consensus       207 -------------------~~--~~~~~~~~~~--------------------~---~~~~~~~~~--~~~~~~~~~~~~  240 (417)
T d1pv7a_         207 -------------------AF--SLKLALELFR--------------------Q---PKLWFLSLY--VIGVSCTYDVFD  240 (417)
T ss_dssp             -------------------CC--CHHHHHHHTT--------------------S---SHHHHHHHH--HHHHHHHHHHHH
T ss_pred             -------------------cc--cccccccccc--------------------c---ccccchhhh--hHHHHHHHHhhh
Confidence                               00  0000000000                    0   000111100  000001100000


Q ss_pred             cCCChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHH
Q 039943          346 SQSSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAA  425 (581)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~  425 (581)
                      .....+..  .... ..    ......... ......+...+...+..++.+|.+       +.+.+..+.++.+++.+.
T Consensus       241 ~~~~~~~~--~~~~-~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~r~~-------~~~~~~~~~~~~~~~~~~  305 (417)
T d1pv7a_         241 QQFANFFT--SFFA-TG----EQGTRVFGY-VTTMGELLNASIMFFAPLIINRIG-------GKNALLLAGTIMSVRIIG  305 (417)
T ss_dssp             HHHHHHHT--TSSS-CH----HHHHHHHHH-HHHHHHHHHHHHHTTHHHHHHHHC-------HHHHHHHHHHHHHHHHHH
T ss_pred             cccccccc--cccc-cc----ccchhhhcc-cccccccccccchhhhhhhhcccc-------cccchhhhHHHHHHhhhc
Confidence            00000000  0000 00    011111111 111112222333334445666644       345777777777777665


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHH-HHHHHHHHH
Q 039943          426 WAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALH-GLGMSVASL  504 (581)
Q Consensus       426 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~ig~~  504 (581)
                      ...                      ..+.+......++.+++.+...+....++.+.+|++.|+++.++. ++...+|..
T Consensus       306 ~~~----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  363 (417)
T d1pv7a_         306 SSF----------------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI  363 (417)
T ss_dssp             HHT----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHH
T ss_pred             ccc----------------------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence            544                      235666677788889999999999999999999999999999975 567789999


Q ss_pred             HHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 039943          505 VASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCREE  566 (581)
Q Consensus       505 i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~  566 (581)
                      +++.+.+.+.|..                +++..|++.++++++..++..+..++.++.+.+
T Consensus       364 i~~~~~G~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  409 (417)
T d1pv7a_         364 FMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL  409 (417)
T ss_dssp             HHHHHHHHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHH
T ss_pred             HHHHHHHHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence            9999999998754                247788889999988888888887766555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=4.6e-12  Score=130.73  Aligned_cols=181  Identities=15%  Similarity=0.067  Sum_probs=140.8

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943           25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~  104 (581)
                      .|.++.+.+..++.....+++..+.+.|+.+.++++..+.++...+..++..++.+++|+++|| ++||+......+...
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccccccccchhHH
Confidence            3455666777778888888899999999999999999999999999999999999999999999 698876555544433


Q ss_pred             HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943          105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (581)
                      +...........                  ...+.+..++..++.|++.++..+...++..|.+|+       +.|+++.
T Consensus       327 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~  381 (447)
T d1pw4a_         327 LVTIATIVYWMN------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTAA  381 (447)
T ss_dssp             HHHHHHHHTTSC------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHHHH
T ss_pred             HHHHHHHHHHhc------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHH
Confidence            333322222100                  122566677777888998888889999999999998       6799999


Q ss_pred             HHHHHHHhh-HHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh
Q 039943          185 SWYYVSVLA-SSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFL  231 (581)
Q Consensus       185 ~~~~~~~~~-g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (581)
                      ++.+...++ |..++|.+.|++.+..||+..|++.+.+.+++.+....
T Consensus       382 g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         382 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            998887776 56778999999999999999988877766665544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.5e-12  Score=131.82  Aligned_cols=148  Identities=7%  Similarity=0.003  Sum_probs=126.2

Q ss_pred             hhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccc
Q 039943           55 GEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESA  134 (581)
Q Consensus        55 ~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (581)
                      +..+.+....+.......++..++.++.+++.|| +|||+++..+.++..++.++..+.+                    
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  310 (417)
T d1pv7a_         252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT--------------------  310 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHTCC--------------------
T ss_pred             cccccchhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHHhhhcccccc--------------------
Confidence            3455566777888888889999999999999999 7999999999999999888888877                    


Q ss_pred             cchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHH-HHHhhHHHHHHHHHHhhhccccchh
Q 039943          135 TWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYY-VSVLASSMVAVTCIVYIQDNLGWKV  213 (581)
Q Consensus       135 ~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~p~~~~~i~~~~g~~~  213 (581)
                         +.+.+++..++.|++.+...+...+++.|.+|+       +.|++.++..+ ....+|..++|.+.|++.|..||+.
T Consensus       311 ---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~  380 (417)
T d1pv7a_         311 ---SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG  380 (417)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG-------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             ---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Confidence               677788888999999999999999999999998       77999999865 4567999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhcC
Q 039943          214 GFGVPAVISLLSALSFFLAS  233 (581)
Q Consensus       214 ~f~~~~~~~~i~~~~~~~~~  233 (581)
                      .|++.+++.++..++..+..
T Consensus       381 ~~~~~~~~~~~~~~~~~~~l  400 (417)
T d1pv7a_         381 AYLVLGLVALGFTLISVFTL  400 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            99988877766655544433