Citrus Sinensis ID: 039959

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
MAIAKRACTSIAAISLLLCYSAVVSCEVTTGEATGEFNVSAANARANAINRGILDPTAKVFNVLQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKARLVIPRGTFVLGPVTFMGPCNNTPLIVQIQGTIKAITDISEFPGQGEEWVNFQNINGLVVTGSGTFDGQGASCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGISIGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSNPIIIDQEYCPSNSCKSTSEPSLVKLSNIHFKNISGTYNTESGVTLICSSGVPCENIHLIDINLNPTEPETPREGRFNVKGVVNGLEILNSSF
cccccccHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEccccccccEEEEEEEEEEEcccccccccccccEEEEEEEccEEEEEEEEEccccHHHHcccccccccccccccccEEEEEEEEEcEEEEcEEEEccccEEEEEEcEEcEEEEEEEEEccccccccccccccccccEEEEEEEEEccccEEEEccccEEEEEEEEEEccccccEEEEEEcccccccEEEEEEEEEEEEccccEEEEEEccccccEEEEEEEEEcEEEccccccEEEEEEEccccccccccccccEEEEcEEEEEEEEEEccccEEEEEccccccEEcEEEEEEEEEEcccccccEEEEcEEEEEccEEEccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEEcccccccEEEEEEEEEEccccHHHccccccEEEEEEEEcEEEEEEcEEEcccccHHHcccccccccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEccEEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEccccccccEEEEEEEEEEEEcccccEEEEccccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEcccccccccHccccccccccEcccccc
MAIAKRACTSIAAISLLLCYSAVVScevttgeatgefNVSAANARANAinrgildptAKVFNVlqfgakpgdkedrhnidsNHMAFVKAFEAACHHegkarlviprgtfvlgpvtfmgpcnntplIVQIQGTIKAITdisefpgqgeewVNFQNINGlvvtgsgtfdgqgascwkyrdtkndnnvpgqrlpaniqfVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHlniiapdespntdgihisqSDVVKIAKSYigtgddcvgmirgssnvsvkkvtcgpghgisigslgkytdeedvvginvrnctitgtqngvrvktwpgapashasnfmfTDIVMInvsnpiiidqeycpsnsckstsepslvklsnihfknisgtyntesGVTLICssgvpcenihlidinlnptepetpregrfnvkgVVNGLEILNSSF
MAIAKRACTSIAAISLLLCYSAVVSCEVTTGEATGEFNVSAANARANAINRGILDPTAKVFNVLQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKARLVIPRGTFVLGPVTFMGPCNNTPLIVQIQGTIKAITDISEFPGQGEEWVNFQNINGLVVTGSGTFDGQGASCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKvtcgpghgisigslgkytDEEDVVGINVRNctitgtqngvrvKTWPGAPASHASNFMFTDIVMINVSNPIIIDQEYCPSNSCKSTSEPSLVKLSNIHFKNISGTYNTESGVTLICSSGVPCENIHLIDINLNptepetpregrfnvkgvvngleilnssf
MAIAKRACTSIAAISLLLCYSAVVSCEVTTGEATGEFNVSaanaranainrGILDPTAKVFNVLQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKARLVIPRGTFVLGPVTFMGPCNNTPLIVQIQGTIKAITDISEFPGQGEEWVNFQNINGLVVTGSGTFDGQGASCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGISIGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSNPIIIDQEYCPSNSCKSTSEPSLVKLSNIHFKNISGTYNTESGVTLICSSGVPCENIHLIDINLNPTEPETPREGRFNVKGVVNGLEILNSSF
*****RACTSIAAISLLLCYSAVVSCEVTTGEATGEFNVSAANARANAINRGILDPTAKVFNVLQFGA**********IDSNHMAFVKAFEAACHHEGKARLVIPRGTFVLGPVTFMGPCNNTPLIVQIQGTIKAITDISEFPGQGEEWVNFQNINGLVVTGSGTFDGQGASCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGISIGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSNPIIIDQEYCPSN********SLVKLSNIHFKNISGTYNTESGVTLICSSGVPCENIHLIDINLN***********FNVKGVVNGL*******
************AISLLLCYSAVVSCEVTT****************************KVFNVLQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKARLVIPRGTFVLGPVTFMGPCNNTPLIVQIQGTIKAITDISEFPGQGEEWVNFQNINGLVVTGSGTFDGQGASCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGISI**L***TDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSNPIIIDQEYCPSNSCKSTSEPSLVKLSNIHFKNISGTYNTESGVTLICSSGVPCENIHLIDINLNPTEPETPREGRFNVKGVVNGLEILNSSF
MAIAKRACTSIAAISLLLCYSAVVSCEVTTGEATGEFNVSAANARANAINRGILDPTAKVFNVLQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKARLVIPRGTFVLGPVTFMGPCNNTPLIVQIQGTIKAITDISEFPGQGEEWVNFQNINGLVVTGSGTFDGQGASCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGISIGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSNPIIIDQEYCPS********PSLVKLSNIHFKNISGTYNTESGVTLICSSGVPCENIHLIDINLNPTEPETPREGRFNVKGVVNGLEILNSSF
*AIAKRACTSIAAISLLLCYSAVVSCEVTT****************************KVF**LQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKARLVIPRGTFVLGPVTFMGPCNNTPLIVQIQGTIKAITDISEFPGQGEEWVNFQNINGLVVTGSGTFDGQGASCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGISIGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSNPIIIDQEYCPSNSCKSTSEPSLVKLSNIHFKNISGTYNTESGVTLICSSGVPCENIHLIDINLNPTEPETPREGRFNVKGVVNGLEILNSSF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAIAKRACTSIAAISLLLCYSAVVSCEVTTGEATGEFNVSAANARANAINRGILDPTAKVFNVLQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKARLVIPRGTFVLGPVTFMGPCNNTPLIVQIQGTIKAITDISEFPGQGEEWVNFQNINGLVVTGSGTFDGQGASCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGISIGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSNPIIIDQEYCPSNSCKSTSEPSLVKLSNIHFKNISGTYNTESGVTLICSSGVPCENIHLIDINLNPTEPETPREGRFNVKGVVNGLEILNSSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query439 2.2.26 [Sep-21-2011]
Q39786407 Polygalacturonase OS=Goss N/A no 0.808 0.872 0.463 6e-84
Q39766407 Polygalacturonase OS=Goss N/A no 0.813 0.877 0.460 1e-83
Q6H9K0377 Exopolygalacturonase (Fra N/A no 0.788 0.917 0.450 2e-83
Q40312421 Polygalacturonase OS=Medi N/A no 0.765 0.798 0.472 7e-83
P24548362 Exopolygalacturonase (Fra N/A no 0.788 0.955 0.443 2e-81
P35337397 Polygalacturonase OS=Bras N/A no 0.744 0.823 0.447 2e-79
Q05967396 Polygalacturonase OS=Nico N/A no 0.813 0.901 0.410 1e-78
P49062422 Exopolygalacturonase clon no no 0.829 0.862 0.426 2e-76
P49063444 Exopolygalacturonase clon no no 0.742 0.734 0.456 9e-74
P35339410 Exopolygalacturonase OS=Z N/A no 0.772 0.826 0.393 3e-69
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function desciption
 Score =  311 bits (797), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 172/371 (46%), Positives = 225/371 (60%), Gaps = 16/371 (4%)

Query: 63  VLQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKARLVIPRGTFVLGPVTFMGPCNN 122
           V +FGAK   K D          F+ A++ AC     + +VIP+GT++L  V   GPC  
Sbjct: 32  VAKFGAKADGKTDLSK------PFLDAWKEACASVTPSTVVIPKGTYLLSKVNLEGPCK- 84

Query: 123 TPLIVQIQGTIKAITDISEFPGQGEEWVNFQNINGLVVTGSGTFDGQGASCWKYRDTKND 182
            P+ + +QGTI+A  D S F  +   WV F ++    + G G FDGQG+    Y     +
Sbjct: 85  APIEINVQGTIQAPADPSAF--KDPNWVRFYSVENFKMFGGGIFDGQGSIA--YEKNTCE 140

Query: 183 NNVPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIAPDESPNTD 242
           N     +LP NI+F  ++NA+++ ITS +SK FH  +  CKNI L  L I APDESPNTD
Sbjct: 141 NREFRSKLPVNIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTD 200

Query: 243 GIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGISIGSLGKYTDEEDV 302
           GIH+ +S+ V I  S I TGDDC+ +  G+ N+ +K++TCGPGHGISIGSLGK+ +EE V
Sbjct: 201 GIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPV 260

Query: 303 VGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSNPIIIDQEYCPSNSCK 362
            GI + NCTIT T NG R+KTWPG      S   F DI M NVS+PI+IDQ+YCP N CK
Sbjct: 261 EGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCK 320

Query: 363 STSEPSLVKLSNIHFKNISGTYNTESGVTLICSSGVPCENIHLIDINL--NPTEPETPRE 420
              E S VKLSNI FKNI GT      +  ICS   PC+N+ L DI++  N  EP T + 
Sbjct: 321 KNEE-SKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIKHNGAEPATSQ- 378

Query: 421 GRFNVKGVVNG 431
              NVK + +G
Sbjct: 379 -CLNVKPITSG 388
May function in the depolymerization of the pectin in its walls during pollen tube elongation, or in that of the pistil during pollination.
Gossypium hirsutum (taxid: 3635)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1 Back     alignment and function description
>sp|Q40312|PGLR_MEDSA Polygalacturonase OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|P24548|PGLR_OENOR Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1 Back     alignment and function description
>sp|P35337|PGLR_BRANA Polygalacturonase OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q05967|PGLR_TOBAC Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1 Back     alignment and function description
>sp|P49062|PGLR1_ARATH Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1 Back     alignment and function description
>sp|P49063|PGLR2_ARATH Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=1 SV=2 Back     alignment and function description
>sp|P35339|PGLR3_MAIZE Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
147819171 863 hypothetical protein VITISV_012014 [Viti 0.895 0.455 0.533 1e-116
225431792427 PREDICTED: exopolygalacturonase [Vitis v 0.895 0.920 0.533 1e-116
449433417424 PREDICTED: exopolygalacturonase-like [Cu 0.806 0.834 0.509 1e-103
255551843412 Exopolygalacturonase clone GBGE184 precu 0.765 0.815 0.544 1e-102
296083327405 unnamed protein product [Vitis vinifera] 0.842 0.913 0.503 1e-100
224103843408 predicted protein [Populus trichocarpa] 0.833 0.897 0.524 4e-99
359474790424 PREDICTED: exopolygalacturonase-like [Vi 0.788 0.816 0.5 5e-95
224107090410 predicted protein [Populus trichocarpa] 0.765 0.819 0.537 1e-94
297743916426 unnamed protein product [Vitis vinifera] 0.813 0.838 0.466 5e-93
224102769410 predicted protein [Populus trichocarpa] 0.783 0.839 0.480 7e-93
>gi|147819171|emb|CAN69218.1| hypothetical protein VITISV_012014 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/412 (53%), Positives = 285/412 (69%), Gaps = 19/412 (4%)

Query: 1   MAIAKRACTSIAAISLLLCYSAVVSCEVTTGEATGEFNVSAANARANAINRGILDPTAKV 60
           MA A+     I   S LLC  A+VS     G            A      RG + P   +
Sbjct: 1   MATAR----GIILYSFLLCSFALVSSRANAGYHPRVXRGQGGVAHHGGRGRGSI-PGETI 55

Query: 61  FNVLQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKARLVIPRGTFVLGPVTFMGPC 120
           FNVLQ+GAKPG K+D         AF+KA+ AACH  GKARL+IP+G F++G VTF GPC
Sbjct: 56  FNVLQYGAKPGGKKDSTE------AFMKAWVAACHWRGKARLLIPQGIFLIGQVTFQGPC 109

Query: 121 NN-TPLIVQIQGTIKAITDISEFPGQGEEWVNFQNINGLVVTGSGTFDGQGASCWKYRDT 179
           N+ TP+IVQ+  T+KA+TDISEF     EWV F++INGL+VTG GTFDGQG   WKY D 
Sbjct: 110 NSPTPIIVQVAATLKAVTDISEF--ASPEWVTFEDINGLIVTGGGTFDGQGDVVWKYNDC 167

Query: 180 KNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIAPDESP 239
           + ++N   Q LP +I+F  ++N  +RGI SVN+K FH  +  C+N R + L I AP++SP
Sbjct: 168 RRNSNC--QLLPTSIKFNSITNGNLRGINSVNAKSFHIAMNRCQNFRAFGLXITAPEDSP 225

Query: 240 NTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGISIGSLGKYTDE 299
           NTDGIHIS S+ VK++KS I TGDDC+ + +GS+N+S+ KVTCGPGHGISIGSLGKY DE
Sbjct: 226 NTDGIHISSSNFVKVSKSIISTGDDCISIGQGSTNISINKVTCGPGHGISIGSLGKYPDE 285

Query: 300 EDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSNPIIIDQEYCPS- 358
           +DV+GI V+N T+  T NG+R+KTWPG+P S AS  +F DI+M NV NPIIIDQ YCPS 
Sbjct: 286 KDVMGIIVKNSTLMNTDNGLRIKTWPGSPPSQASGILFQDIIMKNVKNPIIIDQLYCPSG 345

Query: 359 NSCKSTSEPSLVKLSNIHFKNISGTYNTESGVTLICSSGVPCENIHLIDINL 410
           +SC+  ++PS V++SNIH++NI GT ++  GV L+CS   PC+N+ L DINL
Sbjct: 346 SSCR--TQPSRVRISNIHYRNIRGTSSSPLGVNLMCSPQFPCQNVELFDINL 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225431792|ref|XP_002272193.1| PREDICTED: exopolygalacturonase [Vitis vinifera] gi|296083328|emb|CBI22964.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449433417|ref|XP_004134494.1| PREDICTED: exopolygalacturonase-like [Cucumis sativus] gi|449503877|ref|XP_004162214.1| PREDICTED: exopolygalacturonase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255551843|ref|XP_002516967.1| Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] gi|223544055|gb|EEF45581.1| Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296083327|emb|CBI22963.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224103843|ref|XP_002334010.1| predicted protein [Populus trichocarpa] gi|222839530|gb|EEE77867.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359474790|ref|XP_002279959.2| PREDICTED: exopolygalacturonase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224107090|ref|XP_002314372.1| predicted protein [Populus trichocarpa] gi|222863412|gb|EEF00543.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297743916|emb|CBI36886.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224102769|ref|XP_002312795.1| predicted protein [Populus trichocarpa] gi|222849203|gb|EEE86750.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
TAIR|locus:2164773395 AT5G48140 [Arabidopsis thalian 0.742 0.825 0.471 2.2e-82
TAIR|locus:2141877414 AT4G18180 [Arabidopsis thalian 0.815 0.864 0.446 3.6e-82
UNIPROTKB|Q6H9K0377 plaa2 "Exopolygalacturonase" [ 0.829 0.965 0.436 4.1e-81
TAIR|locus:2077402391 AT3G07820 [Arabidopsis thalian 0.742 0.833 0.468 4.1e-81
TAIR|locus:2077437401 AT3G07840 [Arabidopsis thalian 0.726 0.795 0.467 1e-77
TAIR|locus:2077412397 AT3G07830 [Arabidopsis thalian 0.744 0.823 0.459 5.5e-77
TAIR|locus:2088252445 AT3G14040 [Arabidopsis thalian 0.824 0.813 0.440 3.9e-76
TAIR|locus:2077442444 AT3G07850 [Arabidopsis thalian 0.822 0.813 0.445 6.3e-76
TAIR|locus:2020352402 AT1G17150 [Arabidopsis thalian 0.822 0.898 0.429 7.3e-75
TAIR|locus:2024680422 PGA4 "polygalacturonase 4" [Ar 0.806 0.838 0.426 3.1e-74
TAIR|locus:2164773 AT5G48140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 158/335 (47%), Positives = 224/335 (66%)

Query:    85 AFVKAFEAACHHEGKARLVIPRGTFVLGPVTFMGPCNNTPLIVQIQGTIKAITDISEFPG 144
             A +KAF  AC    K+ ++IP+G + LG +  MGPC   P+ + + GT+KA  + +   G
Sbjct:    39 ALLKAFNEACQFPTKSTVMIPKGEYKLGEIVMMGPCK-APIRIALLGTVKADGNAN---G 94

Query:   145 QGEEWVNFQNINGLVVTGSGTFDGQGASCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIV 204
             + E+WV F+NING  + G G FDG+G + W+  +     N   ++LP +I+F  V++A +
Sbjct:    95 K-EKWVAFRNINGFKLNGGGVFDGEGNAAWRVNNCHKTFNC--KKLPISIRFDFVTDAKI 151

Query:   205 RGITSVNSKGFHYFITGCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDD 264
             RGITS+++K FH  + G KN+    + IIAP ESPNTDGIH+ +SD +KI  S+I TGDD
Sbjct:   152 RGITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDGIKIINSFISTGDD 211

Query:   265 CVGMIRGSSNVSVKKVTCGPGHGISIGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTW 324
             CV +  G  N+ V++VTCGPGHGISIGSLG+Y+ EE+V GI + NCT+  T NG+R+KTW
Sbjct:   212 CVSVGDGMKNLLVERVTCGPGHGISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTW 271

Query:   325 PGAPASH-ASNFMFTDIVMINVSNPIIIDQEYCPSNSCKSTSEPSLVKLSNIHFKNISGT 383
             P A  +  AS+  F +I++ NVSNPI+IDQEYCP N C    +PS +KL+NI FK I GT
Sbjct:   272 PSAACTTTASDIHFENILLKNVSNPILIDQEYCPWNQCNK-QKPSTIKLANISFKKIRGT 330

Query:   384 YNTESGVTLICSSGVPCENIHLIDINLNPTEPETP 418
                +  V L+CS G PC+N+ + D+N+  T  + P
Sbjct:   331 SGNKDAVKLLCSKGYPCQNVEVGDVNIQYTGADGP 365
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0009827 "plant-type cell wall modification" evidence=RCA
TAIR|locus:2141877 AT4G18180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6H9K0 plaa2 "Exopolygalacturonase" [Platanus x acerifolia (taxid:140101)] Back     alignment and assigned GO terms
TAIR|locus:2077402 AT3G07820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077437 AT3G07840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077412 AT3G07830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088252 AT3G14040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077442 AT3G07850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020352 AT1G17150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024680 PGA4 "polygalacturonase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033044001
SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (427 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 1e-130
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 2e-94
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 2e-85
PLN02155394 PLN02155, PLN02155, polygalacturonase 3e-80
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 4e-76
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 4e-76
PLN03010409 PLN03010, PLN03010, polygalacturonase 4e-76
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 5e-20
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information 
 Score =  382 bits (982), Expect = e-130
 Identities = 176/371 (47%), Positives = 245/371 (66%), Gaps = 17/371 (4%)

Query: 41  AANARANAINRGILDPTAKVFNVLQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKA 100
            ++A   ++ +G        F+V  FGA+     D    DS   AF+ A++AAC   G  
Sbjct: 20  LSSAGGGSVVKGSSTFL---FDVRSFGARANGHTD----DSK--AFMAAWKAACASTGAV 70

Query: 101 RLVIPRGTFVLGPVTFMGPCNNTPLIVQIQGTIKAITDISEFPGQGEEWVNFQNINGLVV 160
            L+IP GT+ +GPV F GPC N   +  +  T+KA TD+S + G G +W+ F  +NGL +
Sbjct: 71  TLLIPPGTYYIGPVQFHGPCTN---VSSLTFTLKAATDLSRY-GSGNDWIEFGWVNGLTL 126

Query: 161 TGSGTFDGQGASCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFIT 220
           TG GTFDGQGA+ W +       +   + LP +++FV ++N +VRGITSVNSK FH  + 
Sbjct: 127 TGGGTFDGQGAAAWPFNKCPIRKDC--KLLPTSVKFVNMNNTVVRGITSVNSKFFHIALV 184

Query: 221 GCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKV 280
            C+N +   L I AP +SPNTDGIHI +S  V I+ S IGTGDDC+ + +G+S V++ ++
Sbjct: 185 ECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRI 244

Query: 281 TCGPGHGISIGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPA-SHASNFMFTD 339
            CGPGHGIS+GSLG+Y +E DV G+ VR+CT TGT NG+R+KTW  +P  S A+N  F +
Sbjct: 245 RCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFEN 304

Query: 340 IVMINVSNPIIIDQEYCPSNSCKSTSEPSLVKLSNIHFKNISGTYNTESGVTLICSSGVP 399
           IVM NV+NPIIIDQ+YCP  SC+S   PS V LS+I+FKNI GT +++  V L CS GVP
Sbjct: 305 IVMNNVTNPIIIDQKYCPFYSCESK-YPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVP 363

Query: 400 CENIHLIDINL 410
           C+ ++L D++L
Sbjct: 364 CQGVYLQDVHL 374

Length = 404
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 439
PLN02793443 Probable polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN03010409 polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.93
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.86
PLN02793443 Probable polygalacturonase 99.85
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.84
PLN03010409 polygalacturonase 99.83
PLN02218431 polygalacturonase ADPG 99.83
PLN03003456 Probable polygalacturonase At3g15720 99.83
PLN02155394 polygalacturonase 99.82
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.82
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.77
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.65
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.42
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.68
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.64
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.64
smart00656190 Amb_all Amb_all domain. 98.55
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.48
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.44
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.37
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.35
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.29
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.26
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.18
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.18
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.13
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.12
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.08
PLN02480343 Probable pectinesterase 98.08
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.07
PRK10531422 acyl-CoA thioesterase; Provisional 97.94
PLN02176340 putative pectinesterase 97.84
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.8
smart00656190 Amb_all Amb_all domain. 97.79
PLN02634359 probable pectinesterase 97.76
PLN02682369 pectinesterase family protein 97.74
PLN02665366 pectinesterase family protein 97.73
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.72
PLN02773317 pectinesterase 97.58
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.36
PLN02304379 probable pectinesterase 97.31
PLN02916502 pectinesterase family protein 97.29
PLN02671359 pectinesterase 97.28
PLN02432293 putative pectinesterase 97.27
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.21
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.12
PLN02497331 probable pectinesterase 97.11
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.11
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.09
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.08
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.05
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.03
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.02
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.02
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.02
PLN02506537 putative pectinesterase/pectinesterase inhibitor 96.97
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.96
PLN02488509 probable pectinesterase/pectinesterase inhibitor 96.81
PLN02314586 pectinesterase 96.8
PLN02416541 probable pectinesterase/pectinesterase inhibitor 96.76
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 96.75
PLN02217670 probable pectinesterase/pectinesterase inhibitor 96.71
PLN02197588 pectinesterase 96.69
PLN02301548 pectinesterase/pectinesterase inhibitor 96.63
PLN02313587 Pectinesterase/pectinesterase inhibitor 96.59
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.51
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 96.13
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 95.53
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.17
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 94.84
PF1221867 End_N_terminal: N terminal extension of bacterioph 94.19
PLN02773317 pectinesterase 93.38
PLN02480343 Probable pectinesterase 91.56
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 90.35
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 90.34
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 88.93
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 88.36
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 88.02
PLN02170529 probable pectinesterase/pectinesterase inhibitor 86.81
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 86.63
PLN02916502 pectinesterase family protein 86.27
PLN02665366 pectinesterase family protein 85.91
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 85.86
PLN02682369 pectinesterase family protein 85.6
PLN02506537 putative pectinesterase/pectinesterase inhibitor 85.21
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 83.98
PLN02201520 probable pectinesterase/pectinesterase inhibitor 83.86
PLN02634359 probable pectinesterase 83.62
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 83.47
PLN02432293 putative pectinesterase 83.3
PLN02416541 probable pectinesterase/pectinesterase inhibitor 83.13
PLN02301548 pectinesterase/pectinesterase inhibitor 82.82
PLN02468565 putative pectinesterase/pectinesterase inhibitor 82.71
PLN02488509 probable pectinesterase/pectinesterase inhibitor 82.7
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 82.3
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 82.1
PRK10531422 acyl-CoA thioesterase; Provisional 82.01
PLN02304379 probable pectinesterase 81.51
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 81.35
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 81.22
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 80.98
PLN02313587 Pectinesterase/pectinesterase inhibitor 80.48
PLN02497331 probable pectinesterase 80.2
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=8.5e-82  Score=643.16  Aligned_cols=371  Identities=40%  Similarity=0.705  Sum_probs=340.1

Q ss_pred             CCeeEEEeecCCcCCCcccccCCchhHHHHHHHHHHHhhcCCCcEEEEcCc-EEEEeeEEeeCccCCCCeEEEEccEEEE
Q 039959           57 TAKVFNVLQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKARLVIPRG-TFVLGPVTFMGPCNNTPLIVQIQGTIKA  135 (439)
Q Consensus        57 ~~~~~~v~~~Ga~~dg~~d~~~~~~~t~a~~~A~~~a~~~~~~~~v~~P~G-~y~~~~i~l~g~~~~s~vtl~l~g~l~~  135 (439)
                      .+++|||+||||++||++||      |+|||+||++||+..++++|+||+| +|+++++.|+||| ||+++|+++|+|++
T Consensus        49 ~~~~~~V~dfGA~gDG~tdd------T~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpc-ks~vtL~l~g~l~~  121 (443)
T PLN02793         49 SERVLHVGDFGAKGDGVTDD------TQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPC-KAKLTLQISGTIIA  121 (443)
T ss_pred             CceEEEhhhcccCCCCCCcc------HHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCcc-CCCeEEEEEEEEEc
Confidence            34899999999999999999      9999999998999888999999999 5999999999999 99999999999999


Q ss_pred             eecCCCCCCC-CceeEEEeeeeceEEecceEEeCCCCccccccCCCCCCCCCCcCCCceeEEeeeccEEEEeeEEecCCC
Q 039959          136 ITDISEFPGQ-GEEWVNFQNINGLVVTGSGTFDGQGASCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKG  214 (439)
Q Consensus       136 ~~~~~~~~~~-~~~~I~~~~~~nV~I~G~GtIDG~G~~~w~~~~~~~~~~~p~~~~p~~i~~~~~~nv~I~~v~i~ns~~  214 (439)
                      +.++.+|++. ...||++.+.+|++|+|.|+|||+|..||... ++.....|+..||++|.|.+|+|++|++++++|+|+
T Consensus       122 ~~d~~~w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~-~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~  200 (443)
T PLN02793        122 PKDPDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQS-CKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQ  200 (443)
T ss_pred             cCChHHccCCCCceEEEEecCceEEEEeceEEECCCccccccc-ccccCCCCccCCceEEEEEeeccEEEECeEEEcCCC
Confidence            9999999753 35799999999999999999999999999642 222222345678999999999999999999999999


Q ss_pred             eeEEEeceecEEEEeEEEECCCCCCCCCceeeeCceeEEEEeeEEecCCceEEecCCceeEEEEeeEecCCceEEEeecC
Q 039959          215 FHYFITGCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGISIGSLG  294 (439)
Q Consensus       215 ~~i~~~~~~nv~i~n~~i~~~~~~~n~DGI~i~~s~nv~I~n~~i~~gDD~i~i~~gs~nV~I~n~~~~~~~Gi~igs~g  294 (439)
                      |++++..|+||+|+|++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|.++|||+|||+|
T Consensus       201 ~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg  280 (443)
T PLN02793        201 MHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLG  280 (443)
T ss_pred             eEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEeccc
Confidence            99999999999999999999998999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCEEEEEEEeEEEeCCcceEEEEecCCCCCcceeeEEEEeEEEeccCccEEEEeeeCCCC-CCCCCCCCCceeEE
Q 039959          295 KYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSNPIIIDQEYCPSN-SCKSTSEPSLVKLS  373 (439)
Q Consensus       295 ~~~~~~~v~nI~v~n~~~~~~~~gi~Iks~~g~~~g~v~nI~f~ni~~~~~~~~i~I~~~y~~~~-~~~~~~~~~~~~i~  373 (439)
                      ++...+.|+||+|+||+|.++.+|+|||+|+++ +|.|+||+|+||+|+++.+||.|++.|++.. .|..  .++.+.|+
T Consensus       281 ~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~-~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~--~ts~v~I~  357 (443)
T PLN02793        281 KSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGG-SGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCAN--QTSAVKVE  357 (443)
T ss_pred             CcCCCCcEEEEEEEccEEeCCCceEEEEEeCCC-CEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCC--CCCCeEEE
Confidence            987778999999999999999999999999964 7999999999999999999999999998743 4543  45678999


Q ss_pred             eEEEEeEEEEecCCceEEEeecCCCCeecEEEEeEEEecCCCCCCccc-cccccccccceecCCCCC
Q 039959          374 NIHFKNISGTYNTESGVTLICSSGVPCENIHLIDINLNPTEPETPREG-RFNVKGVVNGLEILNSSF  439 (439)
Q Consensus       374 nI~f~nI~~~~~~~~~i~i~~~~~~~~~~I~~~nv~~~~~~~~~~~~~-C~~~~g~~~~~~~~~~~~  439 (439)
                      ||+|+||+++.....++.|.|++..||+||+|+||+++...++ +..+ |+|++|...|.+.|++|+
T Consensus       358 nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~~~~~~~p~~C~  423 (443)
T PLN02793        358 NISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGSSSGQVYPPPCF  423 (443)
T ss_pred             eEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEeECCeEcCCccc
Confidence            9999999999876678999999999999999999999987654 4456 999999999999999996

>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 1e-15
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 5e-13
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 1e-12
1nhc_A336 Structural Insights Into The Processivity Of Endopo 3e-12
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 1e-11
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 2e-11
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 2e-09
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 3e-09
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 4e-06
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 97/209 (46%), Gaps = 20/209 (9%)
Query: 160 VTGSGTFDGQGA--------SCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVN 211
           + G GT DGQG         S W+         +  Q  P  IQ  +  N  +  ++ +N
Sbjct: 113 IYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLK-QNTPRLIQINKSKNFTLYNVSLIN 171
Query: 212 SKGFHYFITGCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGM--I 269
           S  FH   +       +   I  P  + NTDGI    S  + IA S I TGDD V +   
Sbjct: 172 SPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAY 231
Query: 270 RG---SSNVSVKKVTCGPGHGISIGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPG 326
           +G   + N+S+     G GHG+SIGS     +   V  + V +  + GT NG+R+K+   
Sbjct: 232 KGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKSDKS 286
Query: 327 APASHASNFMFTDIVMINVSNPIIIDQEY 355
           A A   +   ++++VM NV+ PI+ID  Y
Sbjct: 287 A-AGVVNGVRYSNVVMKNVAKPIVIDTVY 314
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-107
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 2e-98
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 2e-96
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 2e-92
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 2e-91
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 3e-87
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 2e-85
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 3e-85
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 7e-80
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 1e-74
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 5e-25
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 9e-21
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 5e-19
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 4e-17
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 2e-14
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 1e-09
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 5e-09
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 6e-04
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  323 bits (829), Expect = e-107
 Identities = 81/381 (21%), Positives = 141/381 (37%), Gaps = 40/381 (10%)

Query: 56  PTAKVFNVLQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKARLVIPRGTFVLG-PV 114
              K  N+L +GA   +  D         A   A+ AAC   G   + IP G + L   V
Sbjct: 16  GATKTCNILSYGAVADNSTD------VGPAITSAW-AACKSGG--LVYIPSGNYALNTWV 66

Query: 115 TFMGPCNNTPLIVQIQGTIKAITDISEFPGQGEEWVNFQNINGLVVTGSGTFDGQGASCW 174
           T  G        +Q+ G I      S          +  +      T  G   G G    
Sbjct: 67  TLTGGSATA---IQLDGIIYRTGTASGNMIA---VTDTTDFELFSSTSKGAVQGFGYVYH 120

Query: 175 KYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIA 234
                              ++  +V++  V  I  V++  FH+ +  C +  +Y++ I  
Sbjct: 121 AEGTYG----------ARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRG 170

Query: 235 PDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGISIGSLG 294
            +     DGI +  S++  +    +   D+CV +   ++N+ V+ + C    G ++GSLG
Sbjct: 171 GN-EGGLDGIDVWGSNIW-VHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLG 228

Query: 295 KYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSNPIIIDQE 354
             TD  D+V    RN     +     +K+  G  +   SN +  + +    +  + ID  
Sbjct: 229 ADTDVTDIV---YRNVYTWSSNQMYMIKSNGG--SGTVSNVLLENFIGHGNAYSLDIDGY 283

Query: 355 YCPSNSCKSTSEPSLVKLSNIHFKNISGTYN---TESGVTLICSSGVPCENIHLIDINLN 411
           +    +         V+L+NI  KN  GT     T   + ++CS   PC ++ L DI + 
Sbjct: 284 WSSMTAVA----GDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIW 339

Query: 412 PTEPETPREGRFNVKGVVNGL 432
                +      +  G    L
Sbjct: 340 TESGSSELYLCRSAYGSGYCL 360
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.92
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.91
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.91
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.88
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.87
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.87
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.86
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.86
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.85
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.84
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.84
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.76
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.76
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.57
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.56
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.43
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.41
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.24
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.1
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.07
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.97
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.84
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.72
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.64
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.59
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.55
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.53
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.53
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.52
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.49
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.47
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.44
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.43
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.42
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.41
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.39
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.39
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.36
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.34
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.22
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.21
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.09
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.08
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.03
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.95
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 97.87
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.84
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.81
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.56
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.37
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.33
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 97.21
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.83
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.8
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.62
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 95.78
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 94.54
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 94.48
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 94.17
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 93.9
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 93.88
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 93.12
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 91.26
3riq_A 543 Tailspike protein; right handed beta-helix, endorh 84.37
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 83.75
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=1.1e-66  Score=535.49  Aligned_cols=336  Identities=25%  Similarity=0.386  Sum_probs=299.2

Q ss_pred             CCCCCeeEEEeecCCcCCCcccccCCchhHHHHHHHHHHHhhcCCCcEEEEcCcEEEEeeEEeeCccCCCCeEEEEccEE
Q 039959           54 LDPTAKVFNVLQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKARLVIPRGTFVLGPVTFMGPCNNTPLIVQIQGTI  133 (439)
Q Consensus        54 ~~~~~~~~~v~~~Ga~~dg~~d~~~~~~~t~a~~~A~~~a~~~~~~~~v~~P~G~y~~~~i~l~g~~~~s~vtl~l~g~l  133 (439)
                      |..++++++|++|||+|||++||      |+|||+||+ +|+..++++|+||+|+|+++++.|     +|+++|+++|+|
T Consensus        21 p~~~~~~~~v~~~GA~gdg~tdd------t~Aiq~Ai~-~c~~~ggg~v~vP~G~yl~~~l~l-----~s~v~l~l~gtL   88 (448)
T 3jur_A           21 PQIPDREVNLLDFGARGDGRTDC------SESFKRAIE-ELSKQGGGRLIVPEGVFLTGPIHL-----KSNIELHVKGTI   88 (448)
T ss_dssp             CCCCSCEEEGGGGTCCCEEEEEC------HHHHHHHHH-HHHHHTCEEEEECSSEEEESCEEC-----CTTEEEEESSEE
T ss_pred             CCCCCcEEEEEecccCCCCCeec------HHHHHHHHH-hhhhcCCeEEEECCCcEEEeeeEe-----CCCcEEEEEEEE
Confidence            45577899999999999999999      999999986 666667899999999999999999     589999999999


Q ss_pred             EEeecCCCC-CCC-----------CceeEEEeeeeceEEecceEEeCCC--CccccccCCCCCC----------------
Q 039959          134 KAITDISEF-PGQ-----------GEEWVNFQNINGLVVTGSGTFDGQG--ASCWKYRDTKNDN----------------  183 (439)
Q Consensus       134 ~~~~~~~~~-~~~-----------~~~~I~~~~~~nV~I~G~GtIDG~G--~~~w~~~~~~~~~----------------  183 (439)
                      ++++++.+| +..           ..+||++.+++||+|+|.|+|||+|  +.||.....+...                
T Consensus        89 ~~s~d~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~  168 (448)
T 3jur_A           89 KFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLK  168 (448)
T ss_dssp             EECCCGGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHH
T ss_pred             EecCCHHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhh
Confidence            999999888 321           2468999999999999999999999  8999753211000                


Q ss_pred             -----C---------CCCcCCCceeEEeeeccEEEEeeEEecCCCeeEEEeceecEEEEeEEEECCCCCCCCCceeeeCc
Q 039959          184 -----N---------VPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIAPDESPNTDGIHISQS  249 (439)
Q Consensus       184 -----~---------~p~~~~p~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGI~i~~s  249 (439)
                           .         .....||++|.|.+|+|++|+|++++|+|+|++++..|+||+|+|++|.++  ++|+||||+.+|
T Consensus       169 ~~~~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s  246 (448)
T 3jur_A          169 EMAERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESC  246 (448)
T ss_dssp             HHHHHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSC
T ss_pred             hhhcccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCC
Confidence                 0         012468999999999999999999999999999999999999999999997  689999999999


Q ss_pred             eeEEEEeeEEecCCceEEecCC-----------ceeEEEEeeEe--cCCc-eEEEeecCCCCCCCCEEEEEEEeEEEeCC
Q 039959          250 DVVKIAKSYIGTGDDCVGMIRG-----------SSNVSVKKVTC--GPGH-GISIGSLGKYTDEEDVVGINVRNCTITGT  315 (439)
Q Consensus       250 ~nv~I~n~~i~~gDD~i~i~~g-----------s~nV~I~n~~~--~~~~-Gi~igs~g~~~~~~~v~nI~v~n~~~~~~  315 (439)
                      +||+|+||+|.++||||+++++           ++||+|+||+|  .++| |++|||+    ..+.++||+|+||+|.++
T Consensus       247 ~nV~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~----~~~~v~nV~v~n~~~~~t  322 (448)
T 3jur_A          247 KYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSE----MSGGVRNVVARNNVYMNV  322 (448)
T ss_dssp             EEEEEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSS----CTTCEEEEEEESCEEESC
T ss_pred             cCEEEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCc----ccCcEEEEEEEEEEEecc
Confidence            9999999999999999999998           89999999999  6777 8999998    467999999999999999


Q ss_pred             cceEEEEecCCCCCcceeeEEEEeEEEeccCccE-EEEeeeCCCCCCCCCCCCCceeEEeEEEEeEEEEecCCceEEEee
Q 039959          316 QNGVRVKTWPGAPASHASNFMFTDIVMINVSNPI-IIDQEYCPSNSCKSTSEPSLVKLSNIHFKNISGTYNTESGVTLIC  394 (439)
Q Consensus       316 ~~gi~Iks~~g~~~g~v~nI~f~ni~~~~~~~~i-~I~~~y~~~~~~~~~~~~~~~~i~nI~f~nI~~~~~~~~~i~i~~  394 (439)
                      .+|++||+|.+ ++|.|+||+|+||+|+++.+|+ .|++.|+..  +    .+..+.|+||+|+||+++. .+.++.|.|
T Consensus       323 ~~GirIKt~~g-~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~--~----~~~~~~i~nI~~~NI~~t~-~~~~i~i~g  394 (448)
T 3jur_A          323 ERALRLKTNSR-RGGYMENIFFIDNVAVNVSEEVIRINLRYDNE--E----GEYLPVVRSVFVKNLKATG-GKYAVRIEG  394 (448)
T ss_dssp             SEEEEEECCTT-TCSEEEEEEEESCEEEEESSEEEEEESCGGGC--C----CSCCCEEEEEEEESCEEEE-CSEEEEEEC
T ss_pred             cceEEEEEEcC-CCceEeeEEEEEEEEECCccccEEEEeeccCC--C----CCCCceEEEEEEEeEEEEe-cceEEEEEe
Confidence            99999999985 4799999999999999999998 999999865  1    2345699999999999998 678999999


Q ss_pred             cCCCCeecEEEEeEEEecCCC
Q 039959          395 SSGVPCENIHLIDINLNPTEP  415 (439)
Q Consensus       395 ~~~~~~~~I~~~nv~~~~~~~  415 (439)
                      +++.||+||+|+||++++...
T Consensus       395 ~~~~p~~~I~~~nv~i~~~~~  415 (448)
T 3jur_A          395 LENDYVKDILISDTIIEGAKI  415 (448)
T ss_dssp             BTTBCEEEEEEEEEEEESCSE
T ss_pred             CCCCCEeeEEEEEEEEEcccc
Confidence            999999999999999997643
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase, lipopolysaccharide, viral protein; 1.50A {Siphovirus 9na} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 439
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 8e-71
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 4e-65
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-62
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-58
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 5e-55
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-54
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 1e-50
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 2e-48
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  227 bits (580), Expect = 8e-71
 Identities = 80/376 (21%), Positives = 140/376 (37%), Gaps = 40/376 (10%)

Query: 56  PTAKVFNVLQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKARLVIPRGTFVLG-PV 114
              K  N+L +GA   +  D         A   A+ AAC       + IP G + L   V
Sbjct: 16  GATKTCNILSYGAVADNSTD------VGPAITSAW-AACK--SGGLVYIPSGNYALNTWV 66

Query: 115 TFMGPCNNTPLIVQIQGTIKAITDISEFPGQGEEWVNFQNINGLVVTGSGTFDGQGASCW 174
           T  G        +Q+ G I      S          +  +      T  G   G G    
Sbjct: 67  TLTGGSATA---IQLDGIIYRTGTASGNMIA---VTDTTDFELFSSTSKGAVQGFGYVYH 120

Query: 175 KYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIA 234
                       G      ++  +V++  V  I  V++  FH+ +  C +  +Y++ I  
Sbjct: 121 A----------EGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRG 170

Query: 235 PDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGISIGSLG 294
            +     DGI +  S++  +    +   D+CV +   ++N+ V+ + C    G ++GSLG
Sbjct: 171 GN-EGGLDGIDVWGSNIW-VHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLG 228

Query: 295 KYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSNPIIIDQE 354
             TD  D+V    RN     +     +K+  G  +   SN +  + +    +  + ID  
Sbjct: 229 ADTDVTDIV---YRNVYTWSSNQMYMIKSNGG--SGTVSNVLLENFIGHGNAYSLDIDGY 283

Query: 355 YCPSNSCKSTSEPSLVKLSNIHFKNISGTYN---TESGVTLICSSGVPCENIHLIDINLN 411
           +    +         V+L+NI  KN  GT     T   + ++CS   PC ++ L DI + 
Sbjct: 284 WSSMTAV----AGDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIW 339

Query: 412 PTEPETPREGRFNVKG 427
                +      +  G
Sbjct: 340 TESGSSELYLCRSAYG 355
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.84
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.82
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.81
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.8
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.79
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.76
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.7
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.6
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.52
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.73
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.43
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.29
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 98.11
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.98
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 97.91
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.85
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.78
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.69
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.62
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.55
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.49
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.25
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.12
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.07
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.83
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.66
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.77
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 95.39
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 94.64
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 91.13
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 85.69
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=3e-64  Score=512.95  Aligned_cols=337  Identities=23%  Similarity=0.349  Sum_probs=295.5

Q ss_pred             CCeeEEEeecCCcCCCcccccCCchhHHHHHHHHHHHhhcCCCcEEEEcCcEEEEe-eEEeeCccCCCCeEEEEccEEEE
Q 039959           57 TAKVFNVLQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKARLVIPRGTFVLG-PVTFMGPCNNTPLIVQIQGTIKA  135 (439)
Q Consensus        57 ~~~~~~v~~~Ga~~dg~~d~~~~~~~t~a~~~A~~~a~~~~~~~~v~~P~G~y~~~-~i~l~g~~~~s~vtl~l~g~l~~  135 (439)
                      ..++|||+||||+|||++||      |+|||+|| +||+  ++++|+||+|+|++. ++.|+|+   +++.|+++|+|++
T Consensus        17 ~~k~~nV~dfGA~gDG~tDd------T~Ai~~Ai-~ac~--~gg~V~iP~Gty~l~~~i~l~g~---~~~~l~~~G~i~~   84 (422)
T d1rmga_          17 ATKTCNILSYGAVADNSTDV------GPAITSAW-AACK--SGGLVYIPSGNYALNTWVTLTGG---SATAIQLDGIIYR   84 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBC------HHHHHHHH-HHHT--BTCEEEECSSEEEECSCEEEESC---EEEEEEECSEEEE
T ss_pred             CCcEEEEecCCCCCCCCccC------HHHHHHHH-HhcC--CCCEEEECCCcEEEeCcEEEcCC---CceEEEEeEEEEe
Confidence            45899999999999999999      99999998 4785  367999999999875 6999986   4689999999998


Q ss_pred             eecCCCCCCCCceeEEEeeeeceEEecceEEeCCCCccccccCCCCCCCCCCcCCCceeEEeeeccEEEEeeEEecCCCe
Q 039959          136 ITDISEFPGQGEEWVNFQNINGLVVTGSGTFDGQGASCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKGF  215 (439)
Q Consensus       136 ~~~~~~~~~~~~~~I~~~~~~nV~I~G~GtIDG~G~~~w~~~~~~~~~~~p~~~~p~~i~~~~~~nv~I~~v~i~ns~~~  215 (439)
                      +.+...|.   ..+....+.+.+.+.|.|+|||+|..||..          ...+|++|+|.+|+|++|++++++|++.|
T Consensus        85 ~~~~~~~~---~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~----------~~~~p~~l~~~~~~n~~i~git~~nsp~~  151 (422)
T d1rmga_          85 TGTASGNM---IAVTDTTDFELFSSTSKGAVQGFGYVYHAE----------GTYGARILRLTDVTHFSVHDIILVDAPAF  151 (422)
T ss_dssp             CCCCSSEE---EEEEEEEEEEEECSSSCCEEECCTHHHHTT----------TCCCCEEEEEEEEEEEEEEEEEEECCSSC
T ss_pred             ccCCccCE---EEeccCccEEEEEeecceEEecCcceecCC----------CCCCCcEEEEEeeeeeEEECcEecCCCce
Confidence            76554332   334445556667778999999999999964          34579999999999999999999999999


Q ss_pred             eEEEeceecEEEEeEEEECCCCCCCCCceeeeCceeEEEEeeEEecCCceEEecCCceeEEEEeeEecCCceEEEeecCC
Q 039959          216 HYFITGCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGISIGSLGK  295 (439)
Q Consensus       216 ~i~~~~~~nv~i~n~~i~~~~~~~n~DGI~i~~s~nv~I~n~~i~~gDD~i~i~~gs~nV~I~n~~~~~~~Gi~igs~g~  295 (439)
                      ++++..|++++|+|++|.++ +.+|+||||+.+ +||+|+||+|.++||||+++++++||+|+|++|.++||++|||+|.
T Consensus       152 ~i~i~~c~~v~i~nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~  229 (422)
T d1rmga_         152 HFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA  229 (422)
T ss_dssp             SEEEEEEEEEEEEEEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECT
T ss_pred             EEEEeccccEEEEeeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccC
Confidence            99999999999999999986 468999999976 5899999999999999999999999999999999999999999974


Q ss_pred             CCCCCCEEEEEEEeEEEeCCcceEEEEecCCCCCcceeeEEEEeEEEeccCccEEEEeeeCCCCCCCCCCCCCceeEEeE
Q 039959          296 YTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSNPIIIDQEYCPSNSCKSTSEPSLVKLSNI  375 (439)
Q Consensus       296 ~~~~~~v~nI~v~n~~~~~~~~gi~Iks~~g~~~g~v~nI~f~ni~~~~~~~~i~I~~~y~~~~~~~~~~~~~~~~i~nI  375 (439)
                         ...|+||+|+||++.++.+|++||++.+  .|.|+||+|+||+|+++++||.|++.|++...+    .+++++|+||
T Consensus       230 ---~~~V~nV~v~n~~~~~s~~g~~ik~~~g--~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~----~~~~v~isnI  300 (422)
T d1rmga_         230 ---DTDVTDIVYRNVYTWSSNQMYMIKSNGG--SGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV----AGDGVQLNNI  300 (422)
T ss_dssp             ---TEEEEEEEEEEEEEESSSCSEEEEEBBC--CEEEEEEEEEEEEEEEESCSEEEETBCTTSCCB----SSSCCEEEEE
T ss_pred             ---CCCEEEEEEEeEEEeCCCceEEEEEcCC--CceecceEEEEEEEecccccEEEecccCCCCCC----CCCCeEEEEE
Confidence               4679999999999999999999999864  489999999999999999999999999876654    3456799999


Q ss_pred             EEEeEEEEec---CCceEEEeecCCCCeecEEEEeEEEecCCCCCCccc-ccccccccc
Q 039959          376 HFKNISGTYN---TESGVTLICSSGVPCENIHLIDINLNPTEPETPREG-RFNVKGVVN  430 (439)
Q Consensus       376 ~f~nI~~~~~---~~~~i~i~~~~~~~~~~I~~~nv~~~~~~~~~~~~~-C~~~~g~~~  430 (439)
                      +|+||+++..   .+.+++|.|++..||+||+|+||+|+...++ +... |+||+|...
T Consensus       301 t~~Ni~GT~~~~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~g~-~~~~~C~na~G~~~  358 (422)
T d1rmga_         301 TVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGS-SELYLCRSAYGSGY  358 (422)
T ss_dssp             EEEEEEEEESCTTTSCSEEEECBTTBCEEEEEEEEEEEEESSSS-CEEEEEESEEEEST
T ss_pred             EEEeEEEEecCCcccccEEEEcCCCCCCcceEEEEEEEEcCCCC-CcceEEECceeeEE
Confidence            9999999874   3568999999999999999999999988765 3455 999998653
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure