Citrus Sinensis ID: 039964

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNELCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKLQRRFRN
Secondary Structure (PSIPRED)
cEEEcccccccccccccccccccccEEccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccEEHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEcccccccccccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHccccccccccccHccccccccEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MWLACVHFSltgqitpkigqlksldfldlsrnqffggissslsrlsRLSVMDlsynnlsgkipsgtqlqsFNALTYagnelcglplpnkcpteesapgpgkdnantleeedQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKLQRRFRN
Flexible Loop (DISEMBL)
MWLACVHFSltgqitpkigQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNELCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKLQRRFRN
Low Complexity Region (SEG)
MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGIssslsrlsrlsVMDLSYNNLSGKIPSGTQLQSFNALTYAGNELCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKLQRRFRN
Disordered region (IsUnstruct)
*WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNELCGLPL*************************QFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKL******
Disordered Region (DISOPRED)
MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNELCGLPLPN************************FITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKLQRRFR*
Disordered Region (DISEMBL)
MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNELCGLPLPNKCP***********NANTLEEEDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKLQRRFRN
Disordered Region (DISPRO)
MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNELCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKLQRRF**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNELCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKLQRRFRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.52	0.075	0.437	6e-13
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.52	0.075	0.437	7e-13
Q9LJF3	1164	Receptor-like protein kin	no	no	0.714	0.107	0.374	2e-11
C0LGE4	882	Probable LRR receptor-lik	no	no	0.542	0.107	0.406	3e-11
Q9SYQ8	980	Receptor protein kinase C	no	no	0.537	0.095	0.371	4e-11
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.491	0.071	0.413	5e-11
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.485	0.074	0.476	7e-11
C0LGP9	784	Probable leucine-rich rep	no	no	0.525	0.117	0.421	2e-10
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.457	0.068	0.481	2e-10
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.411	0.071	0.466	3e-10

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 5/96 (5%)

Query: 7   HFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT 66
           H  L+G I  ++G LK++  LDLS N+F G I +SL+ L+ L  +DLS NNLSG IP   
Sbjct: 696 HNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESA 755

Query: 67  QLQSFNALTYAGNELCGLPLPNKCPTEESAPGPGKD 102
              +F    +A N LCG PLP  C +     GP  D
Sbjct: 756 PFDTFPDYRFANNSLCGYPLPIPCSS-----GPKSD 786

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.
Solanum lycopersicum (taxid: 4081)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score = 73.2 bits (178), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 5/96 (5%)

Query: 7   HFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT 66
           H  L+G I  ++G LK++  LDLS N+F G I +SL+ L+ L  +DLS NNLSG IP   
Sbjct: 696 HNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESA 755

Query: 67  QLQSFNALTYAGNELCGLPLPNKCPTEESAPGPGKD 102
              +F    +A N LCG PLP  C +     GP  D
Sbjct: 756 PFDTFPDYRFANNSLCGYPLPLPCSS-----GPKSD 786

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 14/139 (10%)

Query: 7   HFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT 66
           H  LTG I    G LK++  LDLS N   G +  SL  LS LS +D+S NNL+G IP G 
Sbjct: 672 HNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIPFGG 731

Query: 67  QLQSFNALTYAGNE-LCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLGFYVSLILG 125
           QL +F    YA N  LCG+PLP  C    S   P + +A+    + Q I  G    ++  
Sbjct: 732 QLTTFPLTRYANNSGLCGVPLP-PC---SSGSRPTRSHAH---PKKQSIATGMSAGIVFS 784

Query: 126 FFVGFWGFCGTLLVKSSWR 144
           F       C  +L+ + +R
Sbjct: 785 F------MCIVMLIMALYR 797

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGE4|Y1124_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 1/96 (1%)

Query: 10  LTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQ 69
           L G I P++G L  + FLDLS+N   G I SSL  L+ L+  ++SYNNLSG IP    +Q
Sbjct: 416 LNGSIPPELGNLSKVQFLDLSQNSLSGPIPSSLGSLNTLTHFNVSYNNLSGVIPPVPMIQ 475

Query: 70  SFNALTYAGNE-LCGLPLPNKCPTEESAPGPGKDNA 104
           +F +  ++ N  LCG PL   C +  +A      +A
Sbjct: 476 AFGSSAFSNNPFLCGDPLVTPCNSRGAAAKSRNSDA 511

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3

 Score = 67.8 bits (164), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 3/97 (3%)

Query: 10  LTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQ 69
           + G+I   I  +K+L  L++S NQ  G I + +  ++ L+ +DLS+N+LSG++P G Q  
Sbjct: 540 INGEIPKGINNVKNLGTLNISGNQLTGSIPTGIGNMTSLTTLDLSFNDLSGRVPLGGQFL 599

Query: 70  SFNALTYAGNELCGLPLPNKCPTEESAPGPGKDNANT 106
            FN  ++AGN    LP    CPT    PG   D+ +T
Sbjct: 600 VFNETSFAGNTYLCLPHRVSCPTR---PGQTSDHNHT 633

Involved in the detection of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 7   HFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT 66
           H  ++G I  ++G L+ L+ LDLS N+  G I  ++S L+ L+ +DLS NNLSG IP   
Sbjct: 687 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 746

Query: 67  QLQSFNALTYAGNE-LCGLPLPNKCPT 92
           Q ++F    +  N  LCG PLP   P+
Sbjct: 747 QFETFPPAKFLNNPGLCGYPLPRCDPS 773

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 3   LACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKI 62
           L   H  L+G+I   IGQLK+L   D S N+  G I  S S LS L  +DLS N L+G I
Sbjct: 640 LELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPI 699

Query: 63  PSGTQLQSFNALTYAGNE-LCGLPLP 87
           P   QL +  A  YA N  LCG+PLP
Sbjct: 700 PQRGQLSTLPATQYANNPGLCGVPLP 725

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP9|IMK3_ARATH Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 3/95 (3%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
           S++G I   +G + SL  LDLS+N+  G I  S+S L  L+  ++SYNNLSG +P+    
Sbjct: 305 SVSGHIPETLGNISSLIHLDLSQNKLTGEIPISISDLESLNFFNVSYNNLSGPVPTLLS- 363

Query: 69  QSFNALTYAGNE-LCGLPLPNKCPTEESAPGPGKD 102
           Q FN+ ++ GN  LCG  +   CPT  S P P K+
Sbjct: 364 QKFNSSSFVGNSLLCGYSVSTPCPTLPS-PSPEKE 397

Can phosphorylate AGL24.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 7   HFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT 66
           H  +TG I    G LK++  LDLS N   G +  SL  LS LS +D+S NNL+G IP G 
Sbjct: 672 HNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIPFGG 731

Query: 67  QLQSFNALTYAGNE-LCGLPL 86
           QL +F    YA N  LCG+PL
Sbjct: 732 QLTTFPVSRYANNSGLCGVPL 752

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 47/75 (62%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
           +L+G I   +  + SL+ LDLS N+  G I  SL +LS LS   ++YNNLSG IPSG Q 
Sbjct: 558 ALSGSIPSSLSGMTSLEALDLSNNRLSGSIPVSLQQLSFLSKFSVAYNNLSGVIPSGGQF 617

Query: 69  QSFNALTYAGNELCG 83
           Q+F   ++  N LCG
Sbjct: 618 QTFPNSSFESNHLCG 632

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
147855809	1107	hypothetical protein VITISV_029207 [Viti	0.914	0.144	0.558	1e-42
147834202	1270	hypothetical protein VITISV_011552 [Viti	0.914	0.125	0.565	4e-41
359490164	1198	PREDICTED: LRR receptor-like serine/thre	0.942	0.137	0.538	6e-41
225466147	1024	PREDICTED: LRR receptor-like serine/thre	0.92	0.157	0.543	3e-40
225462661	1485	PREDICTED: LRR receptor-like serine/thre	0.937	0.110	0.539	3e-40
147780293	158	hypothetical protein VITISV_037178 [Viti	0.874	0.968	0.552	6e-40
302143722	750	unnamed protein product [Vitis vinifera]	0.942	0.22	0.530	1e-39
359490560	1010	PREDICTED: LRR receptor-like serine/thre	0.942	0.163	0.530	2e-39
225464712	1021	PREDICTED: receptor-like protein 12-like	0.857	0.146	0.576	4e-39
147811986	1085	hypothetical protein VITISV_012666 [Viti	0.925	0.149	0.527	4e-39

>gi|147855809|emb|CAN79130.1| hypothetical protein VITISV_029207 [Vitis vinifera]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 120/170 (70%), Gaps = 10/170 (5%)

Query: 9    SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
            +LTG I   IGQLKSL+ LDLS+N+ FG I +SLS +S LSV+DLS NNLSGKIP GTQL
Sbjct: 941  NLTGLIPTTIGQLKSLEILDLSQNELFGEIPTSLSEISLLSVLDLSNNNLSGKIPKGTQL 1000

Query: 69   QSFNALTYAGN-ELCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLG----FYVSLI 123
            QSFN+ +Y GN  LCGLPL  KCP +E      K ++ T   ED+    G    FY+S+ 
Sbjct: 1001 QSFNSYSYKGNPTLCGLPLLKKCPEDEM-----KQDSPTRSIEDKIQQDGNDMWFYISIA 1055

Query: 124  LGFFVGFWGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKLQRRF 173
            LGF VGFWG CGTLL+ +S R+ Y++FL  IK+WFYVT  +N+AK++R  
Sbjct: 1056 LGFIVGFWGVCGTLLLNNSLRYAYFHFLNKIKDWFYVTIAINMAKVRRSL 1105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834202|emb|CAN64227.1| hypothetical protein VITISV_011552 [Vitis vinifera]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 91/161 (56%), Positives = 112/161 (69%), Gaps = 1/161 (0%)

Query: 10  LTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQ 69
           L G I   IGQLKSLD LDLSRN+  GGI  SLS+++RLSV+DLS N LSGKIPSGTQLQ
Sbjct: 729 LIGPIPLMIGQLKSLDSLDLSRNRLHGGIPXSLSQIARLSVLDLSDNILSGKIPSGTQLQ 788

Query: 70  SFNALTYAGNE-LCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLGFYVSLILGFFV 128
           SFNA TY GN  LCG PL  KC  +E+        +N  + +D    + FY +++LGF +
Sbjct: 789 SFNASTYDGNPGLCGPPLLKKCQEDENREVSFTGLSNEEDIQDDANNIWFYGNIVLGFII 848

Query: 129 GFWGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKL 169
           GFWG CGTLL+ SSWR+ Y+ FL  IK+W YVT  VN+ K+
Sbjct: 849 GFWGVCGTLLLNSSWRYAYFQFLSKIKDWLYVTTTVNMNKI 889

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490164|ref|XP_002268910.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 115/167 (68%), Gaps = 2/167 (1%)

Query: 9    SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
            +LT  I  +IGQLKSL+ LDLS+NQ FG I +SL  +S LSV+DLS NNLSGKIP GTQL
Sbjct: 1032 NLTRLIPTRIGQLKSLEVLDLSQNQLFGEIPASLVEISDLSVLDLSDNNLSGKIPQGTQL 1091

Query: 69   QSFNALTYAGN-ELCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLGFYVSLILGFF 127
            QSFN  +Y GN  LCGLPL  KC  ++   G    N     ++D    + FY+S+ LGF 
Sbjct: 1092 QSFNIDSYKGNPALCGLPLLKKCSEDKIKQGSPTYNIEDKIQQDGN-DMWFYISVALGFI 1150

Query: 128  VGFWGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKLQRRFR 174
            VGFWG CGTLL+ +SWR+ Y+ FL  IK+W Y+   +N+A+LQR F+
Sbjct: 1151 VGFWGVCGTLLLNNSWRYAYFQFLNKIKDWLYMIIAINMARLQRSFQ 1197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466147|ref|XP_002270042.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/171 (54%), Positives = 116/171 (67%), Gaps = 10/171 (5%)

Query: 9    SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
            +LT  I  +IGQLKSL+ LDLS+NQ FG I +SL  +S LSV+DLS NNLSGKIP GTQL
Sbjct: 858  NLTRLIPARIGQLKSLEVLDLSQNQLFGEIPASLVEISDLSVLDLSDNNLSGKIPQGTQL 917

Query: 69   QSFNALTYAGN-ELCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLG----FYVSLI 123
            QSFN  +Y GN  LCGLPL  KC  ++      K ++ T   ED+    G    FYVS+ 
Sbjct: 918  QSFNIDSYKGNPALCGLPLLKKCFEDKI-----KQDSPTHNIEDKIQQDGNDMWFYVSVA 972

Query: 124  LGFFVGFWGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKLQRRFR 174
            LGF VGFWG CGTLL+ +SWR+ Y+ FL  IK+W YV   +N+A+LQR  +
Sbjct: 973  LGFIVGFWGVCGTLLLNNSWRYAYFQFLNKIKDWLYVIIAINMARLQRSLQ 1023

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462661|ref|XP_002266475.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/165 (53%), Positives = 113/165 (68%), Gaps = 1/165 (0%)

Query: 10  LTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQ 69
           L G I   IGQLKSLD LDLSRN+  GGI  SLS+++RLSV+DLS N LSGKIPSGTQLQ
Sbjct: 799 LIGPIPLMIGQLKSLDSLDLSRNRLHGGIPISLSQIARLSVLDLSDNILSGKIPSGTQLQ 858

Query: 70  SFNALTYAGNE-LCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLGFYVSLILGFFV 128
           SFNA TY GN  LCG PL  KC  +E+        +N  + +D    + FY +++LGF +
Sbjct: 859 SFNASTYDGNPGLCGPPLLKKCQEDENREVSFTGLSNEEDIQDDANNIWFYGNIVLGFII 918

Query: 129 GFWGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKLQRRF 173
           GFWG CGTLL+ SSWR+ Y+ FL  IK+W YVT  + ++ L+ + 
Sbjct: 919 GFWGVCGTLLLNSSWRYAYFQFLSKIKDWLYVTTTICMSDLELKL 963

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780293|emb|CAN63562.1| hypothetical protein VITISV_037178 [Vitis vinifera]

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 90/163 (55%), Positives = 107/163 (65%), Gaps = 10/163 (6%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYA 77
           IGQLKSLD LDLS+NQ  G I SSLS + RLS +DLS NNLSG IP GTQLQSFN  +Y 
Sbjct: 1   IGQLKSLDILDLSQNQLIGEIPSSLSEIDRLSTLDLSNNNLSGMIPRGTQLQSFNTSSYE 60

Query: 78  GN-ELCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLG----FYVSLILGFFVGFWG 132
           GN  LCG PL  KCP ++    P     N    ED     G    FYVS+ LGF VGFWG
Sbjct: 61  GNPTLCGPPLLKKCPRDKVEGAP-----NVYSYEDDIQQDGNDMWFYVSIALGFIVGFWG 115

Query: 133 FCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKLQRRFRN 175
            CGTLL+ +SWR+ Y+ FL  IK+W YVT  +N+A+L R  ++
Sbjct: 116 VCGTLLLNNSWRYAYFRFLNKIKDWLYVTTTINMARLWRSLQS 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143722|emb|CBI22583.3| unnamed protein product [Vitis vinifera]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/166 (53%), Positives = 111/166 (66%), Gaps = 1/166 (0%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
           +L G I   IGQLKSLDFLDLS+NQ  GGI  SLS+++ LSV+DLS N LSGKIPSGTQL
Sbjct: 585 NLIGSIPLMIGQLKSLDFLDLSQNQLHGGIPVSLSQIAGLSVLDLSDNILSGKIPSGTQL 644

Query: 69  QSFNALTYAGNE-LCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLGFYVSLILGFF 127
            SFNA TY GN  LCG PL  KC  +E+         N  + +D    + FY +++LGF 
Sbjct: 645 HSFNASTYDGNPGLCGPPLLKKCQEDETKEVSFTSLINEKDIQDDTNNIWFYGNIVLGFI 704

Query: 128 VGFWGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKLQRRF 173
           +GFWG CGTLL+  SWR+ Y+  L  IK+W ++T   NI +L+R F
Sbjct: 705 IGFWGVCGTLLLNRSWRYSYFQTLNKIKDWLHMTTTTNINRLRRSF 750

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490560|ref|XP_002266431.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/166 (53%), Positives = 111/166 (66%), Gaps = 1/166 (0%)

Query: 9    SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
            +L G I   IGQLKSLDFLDLS+NQ  GGI  SLS+++ LSV+DLS N LSGKIPSGTQL
Sbjct: 845  NLIGSIPLMIGQLKSLDFLDLSQNQLHGGIPVSLSQIAGLSVLDLSDNILSGKIPSGTQL 904

Query: 69   QSFNALTYAGNE-LCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLGFYVSLILGFF 127
             SFNA TY GN  LCG PL  KC  +E+         N  + +D    + FY +++LGF 
Sbjct: 905  HSFNASTYDGNPGLCGPPLLKKCQEDETKEVSFTSLINEKDIQDDTNNIWFYGNIVLGFI 964

Query: 128  VGFWGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKLQRRF 173
            +GFWG CGTLL+  SWR+ Y+  L  IK+W ++T   NI +L+R F
Sbjct: 965  IGFWGVCGTLLLNRSWRYSYFQTLNKIKDWLHMTTTTNINRLRRSF 1010

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 87/151 (57%), Positives = 104/151 (68%), Gaps = 1/151 (0%)

Query: 10   LTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQ 69
            L GQI   IGQLKSLD LDLS+NQ  G I SSLS++ RLSV+DLS NNLSG+IPSGTQLQ
Sbjct: 871  LNGQIPSMIGQLKSLDVLDLSKNQLDGKIPSSLSQIDRLSVLDLSSNNLSGQIPSGTQLQ 930

Query: 70   SFNALTYAGN-ELCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLGFYVSLILGFFV 128
             F A +Y GN ELCG PL  KC  +E+A      + N  + +D      FYVS+ LGF V
Sbjct: 931  GFEASSYMGNPELCGSPLKTKCQEDETAQTSPTSDGNEDDLQDDEFDPWFYVSIALGFLV 990

Query: 129  GFWGFCGTLLVKSSWRHHYYNFLPGIKNWFY 159
            GFWG  GTL++KSSW   Y+ FL  IK+WF+
Sbjct: 991  GFWGVWGTLVLKSSWSEAYFRFLNKIKDWFF 1021

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147811986|emb|CAN77037.1| hypothetical protein VITISV_012666 [Vitis vinifera]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/163 (52%), Positives = 109/163 (66%), Gaps = 1/163 (0%)

Query: 12  GQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSF 71
           G I   IGQLKSLDF BLS+NQ  GGI  SLS+++ LSV+DLS N LSGKIPSGTQL SF
Sbjct: 641 GSIPLMIGQLKSLDFXBLSQNQLHGGIPVSLSQIAGLSVLDLSDNILSGKIPSGTQLHSF 700

Query: 72  NALTYAGNE-LCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLGFYVSLILGFFVGF 130
           NA TY GN  LCG PL  KC  +E+         N  + +D    + FY +++LGF +GF
Sbjct: 701 NASTYDGNPGLCGPPLLKKCQEDETKEVSFTSLINEKDIQDDTNNIWFYGNIVLGFIIGF 760

Query: 131 WGFCGTLLVKSSWRHHYYNFLPGIKNWFYVTAVVNIAKLQRRF 173
           WG CGTLL+  SWR+ Y+  L  IK+W ++T   NI +L+RRF
Sbjct: 761 WGVCGTLLLNRSWRYSYFQTLNKIKDWLHMTTTTNINRLRRRF 803

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.731	0.143	0.342	2.2e-13
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.697	0.168	0.356	3.3e-13
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.765	0.147	0.323	4.6e-13
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.811	0.131	0.313	1.2e-12
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.68	0.160	0.338	8.5e-12
TAIR|locus:2040035	671	RLP20 "receptor like protein 2	0.691	0.180	0.328	1.2e-11
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.685	0.135	0.330	1.8e-11
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.68	0.127	0.363	1.9e-11
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.828	0.150	0.301	2e-11
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.76	0.149	0.337	3e-11

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 49/143 (34%), Positives = 75/143 (52%)

Query:     9 SLTGQITPKIGQLKSLDFLDLSRNQFFGGIXXXXXXXXXXXVMDLSYNNLSGKIPSGTQL 68
             + TG I P +  L +L  LDLS+N+  G I            M+ SYN L G IP GTQ+
Sbjct:   748 AFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGELTFLARMNFSYNMLEGPIPQGTQI 807

Query:    69 QSFNALTYAGNE-LCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLGFYVSLILGFF 127
             QS N+ ++A N  LCG PL  KC  EE      +D     EE+D+ ++   +V+  +G+ 
Sbjct:   808 QSQNSSSFAENPGLCGAPLQKKCGGEEE-----EDKEK--EEKDKGLS---WVAAAIGYV 857

Query:   128 VGFWGFCGTLL--VKSSWRHHYY 148
              G   FCG  +  + +S++  ++
Sbjct:   858 PGL--FCGLAIGHILTSYKRDWF 878

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 47/132 (35%), Positives = 66/132 (50%)

Query:     9 SLTGQITPKIGQLKSLDFLDLSRNQFFGGIXXXXXXXXXXXVMDLSYNNLSGKIPSGTQL 68
             + TG I P +  L +L  LDLS+N+  G I            M+ SYN L G IP  TQ+
Sbjct:   590 AFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPPELGKLTFLEWMNFSYNRLEGPIPQATQI 649

Query:    69 QSFNALTYAGNE-LCGLPLPNKC----PTEESAPGPGKDNANTLEEEDQFITLGFYVSLI 123
             QS N+ ++A N  LCG P  NKC      EE A    +D     EE++Q  +   +++  
Sbjct:   650 QSQNSSSFAENPGLCGAPFLNKCGGEEEEEEEATKQEEDEDEEKEEKNQVFS---WIAAA 706

Query:   124 LGFFVGFWGFCG 135
             +G+  G   FCG
Sbjct:   707 IGYVPGV--FCG 716

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 4.6e-13, P = 4.6e-13
 Identities = 46/142 (32%), Positives = 69/142 (48%)

Query:     7 HFSLTGQITPKIGQLKSLDFLDLSRNQFFGGIXXXXXXXXXXXVMDLSYNNLSGKIPSGT 66
             H  L+  I     +L+ ++ LDLS N   G I           + ++SYNNLSG IP G 
Sbjct:   752 HNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQGK 811

Query:    67 QLQSFNALTYAGNEL-CGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLG---FYVSL 122
             Q  +F+  +Y GN L CG P    C T++++    ++NAN  EE+D+ + +    FY S 
Sbjct:   812 QFNTFDENSYLGNPLLCGPPTDTSCETKKNS----EENANGGEEDDKEVAIDMLVFYWST 867

Query:   123 ILGFFVGFWGFCGTLLVKSSWR 144
                +     G    + V  SWR
Sbjct:   868 AGTYVTALIGILVLMCVDCSWR 889

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 48/153 (31%), Positives = 76/153 (49%)

Query:    10 LTGQITPKIGQLKSLDFLDLSRNQFFGGIXXXXXXXXXXXVMDLSYNNLSGKIPSGTQLQ 69
             LTG I   I +LK L+ LDLS N+  G I            +++SYNNLSG+IP    L 
Sbjct:   920 LTGSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLV 979

Query:    70 SFNALTYAGN-ELCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITLGFYVSLILGFFV 128
             +F+  +Y GN  LCGLP    C ++   P P   + +  EEE++    G  + ++  +F 
Sbjct:   980 TFDERSYIGNAHLCGLPTNKNCISQR-VPEPPSVSTHAKEEENE--EEGNVIDMV--WF- 1033

Query:   129 GFWGFCGTLLVKSSWRHHYYNFLPG--IKNWFY 159
              +W  C  + + +S     + ++     + WFY
Sbjct:  1034 -YWT-CAAVYISTSLALFAFLYIDSRWSREWFY 1064

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 8.5e-12, P = 8.5e-12
 Identities = 43/127 (33%), Positives = 63/127 (49%)

Query:     9 SLTGQITPKIGQLKSLDFLDLSRNQFFGGIXXXXXXXXXXXVMDLSYNNLSGKIPSGTQL 68
             + TG I P +  L +L  LDLS+N+  G I            M+ S+N L G IP  TQ+
Sbjct:   598 AFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGKLTFLEWMNFSHNRLEGPIPETTQI 657

Query:    69 QSFNALTYAGNE-LCGLPLPNKCPTEESAPGPGKDNANTLEEEDQFIT-----LGFYVSL 122
             Q+ ++ ++  N  LCG PL  KC  EE A    +D     EEEDQ  +     +G+   +
Sbjct:   658 QTQDSSSFTENPGLCGAPLLKKCGGEEEATKQEQDEDK--EEEDQVFSWIAAAIGYVPGV 715

Query:   123 ILGFFVG 129
             + G  +G
Sbjct:   716 VCGLTIG 722

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2040035 RLP20 "receptor like protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 42/128 (32%), Positives = 63/128 (49%)

Query:     9 SLTGQITPKIGQLKSLDFLDLSRNQFFGGIXXXXXXXXXXXVMDLSYNNLSGKIPSGTQL 68
             + TG I   +  LK L  LD+SRNQ  G I            + +S+N L G+IP GTQ+
Sbjct:   524 AFTGHIPQSLANLKELQSLDMSRNQLSGTIPNGLKQLSFLAYISVSHNQLKGEIPQGTQI 583

Query:    69 QSFNALTYAGNE-LCGLPLPNKCPTEESAPGPGKDNANTLEEEDQF-----ITLGFYVSL 122
                   ++ GN  LCGLPL  +C  + SA        +  EEE+Q      + +G+   L
Sbjct:   584 TGQLKSSFEGNVGLCGLPLEERC-FDNSASPTQHHKQDEEEEEEQVLHWKAVAMGYGPGL 642

Query:   123 ILGFFVGF 130
             ++GF + +
Sbjct:   643 LVGFAIAY 650

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 42/127 (33%), Positives = 63/127 (49%)

Query:     9 SLTGQITPKIGQLKSLDFLDLSRNQFFGGIXXXXXXXXXXXVMDLSYNNLSGKIPSGTQL 68
             + TG I   +  LK ++ LDLS NQ  G I            M++S+N L+G+IP GTQ+
Sbjct:   737 AFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGIGTLSFLAYMNVSHNQLNGEIPQGTQI 796

Query:    69 QSFNALTYAGNE-LCGLPLPNKCPTEESAPGPG-KDNANTLEEEDQFIT-----LGFYVS 121
                   ++ GN  LCGLPL   C    + P    K+     EEE+Q +      +G+ V 
Sbjct:   797 TGQPKSSFEGNAGLCGLPLQESCFGTNAPPAQHPKEEEEEEEEEEQVLNWKGVGIGYGVG 856

Query:   122 LILGFFV 128
             ++LG  +
Sbjct:   857 VLLGLAI 863

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 48/132 (36%), Positives = 60/132 (45%)

Query:     7 HFSLTGQITPKIGQLKSLDFLDLSRNQFFGGIXXXXXXXXXXXVMDLSYNNLSGKIPSGT 66
             H SL G I     +L  ++ LDLS N   G I           V D+S NNLSG IP G 
Sbjct:   779 HNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGR 838

Query:    67 QLQSFNALTYAGNEL-CGLPLPNKCPTEESAPGPGKDNANTLEEEDQ---------FITL 116
             Q  +F   +Y GN L CG P    C T +S P    DN    EE+D+         F T 
Sbjct:   839 QFNTFEEESYLGNPLLCGPPTSRSCETNKS-PEEA-DNGQE-EEDDKAAIDMMVFYFSTA 895

Query:   117 GFYVSLILGFFV 128
               YV+ ++G  V
Sbjct:   896 SIYVTALIGVLV 907

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 47/156 (30%), Positives = 70/156 (44%)

Query:     7 HFSLTGQITPKIGQLKSLDFLDLSRNQFFGGIXXXXXXXXXXXVMDLSYNNLSGKIPSGT 66
             H +L+G I   I  ++ ++  DLS N+  G I           V  +S+NNLSG IP G 
Sbjct:   812 HNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGR 871

Query:    67 QLQSFNALTYAGNEL-CGLPLPNKCPTEESAPGPGKDNANTLEEEDQFITL-GFYVSLIL 124
             Q  +F+A +Y GN L CG P    C           DN   +E ++  I +  FY+S   
Sbjct:   872 QFNTFDAESYFGNRLLCGQPTNRSCNNNSYEEA---DNG--VEADESIIDMVSFYLSFAA 926

Query:   125 GFFVGFWGFCGTLLVKSSW-RHHYYN---FLPGIKN 156
              +     G   +L   S W R  +Y    F+  ++N
Sbjct:   927 AYVTILIGILASLSFDSPWSRFWFYKVDAFIKKVRN 962

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 49/145 (33%), Positives = 69/145 (47%)

Query:     9 SLTGQITPKIGQLKSLDFLDLSRNQFFGGIXXXXXXXXXXXVMDLSYNNLSGKIPSGTQL 68
             SL+G I      L+S++ LDLS N+  G I           V ++SYNNLSG IP G Q 
Sbjct:   737 SLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGKQF 796

Query:    69 QSFNALTYAGNEL-CGLPLPNKCPTEESAPGP---GKDNANTLEEEDQFITLGF-YVSLI 123
              +F   +Y GN L CG P    C     + G      D +  L+    + +LG  YV+++
Sbjct:   797 NTFGEKSYLGNFLLCGSPTKRSCGGTTISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVM 856

Query:   124 LGFFVGFWGFCGTLLVKSSWRHHYY 148
             +GF V    F   L   S WR  ++
Sbjct:   857 MGFLV----F---LCFDSPWRRAWF 874

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014061001 SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (623 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	175
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.2 bits (151), Expect = 9e-12
 Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 10  LTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT-QL 68
           L G+I   +  L SL+FL L+ NQ  G I   L ++  L  + L YNNLSG+IP     L
Sbjct: 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235

Query: 69  QSFNALTYAGNELCGLPLP 87
            S N L    N L G P+P
Sbjct: 236 TSLNHLDLVYNNLTG-PIP 253

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 7/82 (8%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS--GT 66
           S+ G I P +G + SL+ LDLS N F G I  SL +L+ L +++L+ N+LSG++P+  G 
Sbjct: 453 SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512

Query: 67  QL---QSFNALTYAGNELCGLP 85
           +L    SFN    AG  LCG+P
Sbjct: 513 RLLHRASFNFTDNAG--LCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 3e-10
 Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 10  LTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIP-SGTQL 68
           L G I   I +L+ L  ++LS N   G I  SL  ++ L V+DLSYN+ +G IP S  QL
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 69  QSFNALTYAGNELCG 83
            S   L   GN L G
Sbjct: 490 TSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 3   LACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKI 62
           L  V+ +LTG I   +G LK+L +L L +N+  G I  S+  L +L  +DLS N+LSG+I
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 63  PS-GTQLQSFNALTYAGNELCG 83
           P    QLQ+   L    N   G
Sbjct: 301 PELVIQLQNLEILHLFSNNFTG 322

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 10  LTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT-QL 68
           L GQI  ++GQ+KSL ++ L  N   G I   +  L+ L+ +DL YNNL+G IPS    L
Sbjct: 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259

Query: 69  QSFNALTYAGNELCGLPLPN 88
           ++   L    N+L G P+P 
Sbjct: 260 KNLQYLFLYQNKLSG-PIPP 278

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 2   WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGK 61
           W+   + +L+G+I  +IG L SL+ LDL  N   G I SSL  L  L  + L  N LSG 
Sbjct: 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275

Query: 62  IP-SGTQLQSFNALTYAGNELCG 83
           IP S   LQ   +L  + N L G
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSG 298

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 26/54 (48%), Positives = 34/54 (62%)

Query: 10  LTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIP 63
           L+G+I  ++   K L  LDLS NQ  G I +S S +  LS +DLS N LSG+IP
Sbjct: 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 7   HFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT 66
           H  L+GQI     ++  L  LDLS+NQ  G I  +L  +  L  +++S+N+L G +PS  
Sbjct: 532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG 591

Query: 67  QLQSFNALTYAGNE-LCG 83
              + NA   AGN  LCG
Sbjct: 592 AFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
           SL+G+I   + QL++L+ L L  N F G I  +L+ L RL V+ L  N  SG+IP     
Sbjct: 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354

Query: 69  Q-SFNALTYAGNELCG 83
             +   L  + N L G
Sbjct: 355 HNNLTVLDLSTNNLTG 370

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 24/56 (42%), Positives = 34/56 (60%)

Query: 10  LTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG 65
            TG+I   +  L  L  L L  N+F G I  +L + + L+V+DLS NNL+G+IP G
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIP-SGTQ 67
           + TG I P+ G + +L+ LDLS N   G I + +   S L V+DL  N L GKIP S T 
Sbjct: 129 NFTGSI-PR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186

Query: 68  LQSFNALTYAGNELCG 83
           L S   LT A N+L G
Sbjct: 187 LTSLEFLTLASNQLVG 202

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 10  LTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQL 68
            +G +  K+G L  L  L LS N+  G I   LS   +L  +DLS+N LSG+IP+  +++
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546

Query: 69  QSFNALTYAGNELCG 83
              + L  + N+L G
Sbjct: 547 PVLSQLDLSQNQLSG 561

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 23/55 (41%), Positives = 31/55 (56%)

Query: 10  LTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS 64
           L+G+I   IG   SL  LDL  N   G I +SL+ L+ L  + L+ N L G+IP 
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR 206

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 10  LTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQL 68
           L+G I P I  L+ L  LDLS N   G I   + +L  L ++ L  NN +GKIP   T L
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Query: 69  QSFNALTYAGNELCG 83
                L    N+  G
Sbjct: 332 PRLQVLQLWSNKFSG 346

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT-Q 67
           SL G+I   +G  +SL  + L  N F G + S  ++L  +  +D+S NNL G+I S    
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450

Query: 68  LQSFNALTYAGNELCG-LP 85
           + S   L+ A N+  G LP
Sbjct: 451 MPSLQMLSLARNKFFGGLP 469

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 23/43 (53%), Positives = 27/43 (62%)

Query: 22  KSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS 64
           K L+ LDLSRNQF G +   L  LS L  + LS N LSG+IP 
Sbjct: 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLS-RLSVMDLSYNNLSGKIPSGTQ 67
           +++G+I+  I +L  +  ++LS NQ  G I   +   S  L  ++LS NN +G IP G+ 
Sbjct: 80  NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS- 138

Query: 68  LQSFNALTYAGNELCG 83
           + +   L  + N L G
Sbjct: 139 IPNLETLDLSNNMLSG 154

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
           S +G++  +  +L  + FLD+S N   G I+S    +  L ++ L+ N   G +P     
Sbjct: 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS 474

Query: 69  QSFNALTYAGNELCGLPLPNK 89
           +    L  + N+  G  +P K
Sbjct: 475 KRLENLDLSRNQFSGA-VPRK 494

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 27  LDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFNALTYAGNELCGL 84
           +DLS     G ISS++ RL  +  ++LS N LSG IP    T   S   L  + N   G 
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG- 132

Query: 85  PLPN 88
            +P 
Sbjct: 133 SIPR 136

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
PLN03150	623	hypothetical protein; Provisional	99.72
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.56
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.44
PLN03150	623	hypothetical protein; Provisional	99.37
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.0
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.79
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.69
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.65
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.58
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.45
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.38
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.38
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.36
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.34
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.33
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.27
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.25
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.24
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.17
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.13
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.09
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.06
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.97
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.96
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.92
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.9
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.86
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.83
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.75
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.67
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.58
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.36
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.34
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.14
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.08
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.78
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.68
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.67
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.41
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.36
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.11
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.85
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.73
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.52
smart00370	26	LRR Leucine-rich repeats, outliers.	94.6
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.6
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	94.22
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.92
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	93.73
KOG2982	418	consensus Uncharacterized conserved protein [Funct	93.72
PRK15386	426	type III secretion protein GogB; Provisional	93.24
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.83
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.79
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.77
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	91.55
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.29
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	89.72
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	88.37
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	87.34
KOG2123	388	consensus Uncharacterized conserved protein [Funct	86.76
PRK15386	426	type III secretion protein GogB; Provisional	86.49
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	86.27
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	86.16
PF06697	278	DUF1191: Protein of unknown function (DUF1191); In	85.93
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	85.74
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	85.04
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.03
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	84.57
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	83.94
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	81.08
PF15102	146	TMEM154: TMEM154 protein family	80.35

>PLN03150 hypothetical protein; Provisional

Probab=99.72  E-value=3.3e-17  Score=141.86  Aligned_cols=82  Identities=39%  Similarity=0.593  Sum_probs=50.5

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~   80 (175)
                      .|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+. ..+.+|+.+++++|.
T Consensus       422 ~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             EEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence            3566666666666666666666666666666666666666666666666666666666666654 455556666666665


Q ss_pred             CCC
Q 039964           81 LCG   83 (175)
Q Consensus        81 l~~   83 (175)
                      +.|
T Consensus       502 l~g  504 (623)
T PLN03150        502 LSG  504 (623)
T ss_pred             ccc
Confidence            443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.56  E-value=9.4e-15  Score=132.02  Aligned_cols=83  Identities=39%  Similarity=0.520  Sum_probs=70.2

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      +.|+|++|.+.|.+|+.+..+++|+.|+|++|.++|.+|..+..+++|+.|||++|+++|.+|.. ..+.++..+++++|
T Consensus       502 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N  581 (968)
T PLN00113        502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN  581 (968)
T ss_pred             CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence            36888888888888888888888888888888888888888888888888888888888888876 56777888888888


Q ss_pred             cCCC
Q 039964           80 ELCG   83 (175)
Q Consensus        80 ~l~~   83 (175)
                      .+.|
T Consensus       582 ~l~~  585 (968)
T PLN00113        582 HLHG  585 (968)
T ss_pred             ccee
Confidence            7665

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.44  E-value=5.5e-13  Score=120.63  Aligned_cols=82  Identities=38%  Similarity=0.585  Sum_probs=47.1

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc-c
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN-E   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N-~   80 (175)
                      +|+|++|.++|.+|..+..+++|+.|||++|+++|.+|..+..+++|+.|++++|+++|.+|....+..+....+.+| .
T Consensus       527 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~  606 (968)
T PLN00113        527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNID  606 (968)
T ss_pred             EEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCcc
Confidence            455555555555555555555555555555555555555555555555555555555555555555555555555555 4


Q ss_pred             CCC
Q 039964           81 LCG   83 (175)
Q Consensus        81 l~~   83 (175)
                      +||
T Consensus       607 lc~  609 (968)
T PLN00113        607 LCG  609 (968)
T ss_pred             ccC
Confidence            554

>PLN03150 hypothetical protein; Provisional

Probab=99.37  E-value=8.4e-13  Score=114.56  Aligned_cols=91  Identities=35%  Similarity=0.641  Sum_probs=81.0

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC--cccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~--~~~~~l~~l~~~~   78 (175)
                      +.|+|++|.|+|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|+|++|+++|.+|..  ....++..+++.+
T Consensus       445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~  524 (623)
T PLN03150        445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD  524 (623)
T ss_pred             CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence            47999999999999999999999999999999999999999999999999999999999999986  2234566788999


Q ss_pred             c-cCCCCCCCCCCC
Q 039964           79 N-ELCGLPLPNKCP   91 (175)
Q Consensus        79 N-~l~~~p~~~~c~   91 (175)
                      | .+|+.|....|.
T Consensus       525 N~~lc~~p~l~~C~  538 (623)
T PLN03150        525 NAGLCGIPGLRACG  538 (623)
T ss_pred             CccccCCCCCCCCc
Confidence            9 899877655664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.00  E-value=3.3e-10  Score=69.07  Aligned_cols=58  Identities=33%  Similarity=0.325  Sum_probs=45.8

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNL   58 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l   58 (175)
                      ++|++++|+++..-+..|..+++|+.||+++|.++...|..|..+++|++|++++|++
T Consensus         4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             SEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688888888854446778888888888888888865566788888888888888864

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.80  E-value=7.6e-10  Score=80.82  Aligned_cols=80  Identities=29%  Similarity=0.398  Sum_probs=64.4

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL   81 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l   81 (175)
                      .|-||+|.++ .+|+.+.++.+|+.|++++|++. .+|.+++.++.|+.|+++-|.+.-.+-..+.++.+..+++..|++
T Consensus        37 rLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl  114 (264)
T KOG0617|consen   37 RLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNL  114 (264)
T ss_pred             hhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccc
Confidence            3668899998 78888999999999999999998 788889999999999999988873333337777778887777765


Q ss_pred             CC
Q 039964           82 CG   83 (175)
Q Consensus        82 ~~   83 (175)
                      ..
T Consensus       115 ~e  116 (264)
T KOG0617|consen  115 NE  116 (264)
T ss_pred             cc
Confidence            53

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.79  E-value=3.6e-09  Score=64.43  Aligned_cols=60  Identities=35%  Similarity=0.468  Sum_probs=52.1

Q ss_pred             cccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCccC
Q 039964           22 KSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNEL   81 (175)
Q Consensus        22 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~l   81 (175)
                      ++|+.|++++|+++...+..+..+++|++|++++|+++...|.. ..+++++.+++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            57899999999999544468899999999999999999777766 7888999999999864

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.71  E-value=1.8e-08  Score=74.15  Aligned_cols=78  Identities=29%  Similarity=0.376  Sum_probs=23.8

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhh-hCCCCCCEEeccCCcCCCCCCC--CcccCCCCeeeccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSL-SRLSRLSVMDLSYNNLSGKIPS--GTQLQSFNALTYAG   78 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~L~ls~N~l~g~iP~--~~~~~~l~~l~~~~   78 (175)
                      .||||+|.++ .++ .+..++.|+.|++++|.++ .++..+ ..+++|++|++++|++...---  ...+++|..+++.+
T Consensus        46 ~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~  122 (175)
T PF14580_consen   46 VLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG  122 (175)
T ss_dssp             EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred             EEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence            4556666555 332 3555556666666666665 343333 2455666666666655422111  13345555666666


Q ss_pred             ccCC
Q 039964           79 NELC   82 (175)
Q Consensus        79 N~l~   82 (175)
                      |.+|
T Consensus       123 NPv~  126 (175)
T PF14580_consen  123 NPVC  126 (175)
T ss_dssp             -GGG
T ss_pred             Cccc
Confidence            6555

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.69  E-value=3.7e-09  Score=77.26  Aligned_cols=56  Identities=25%  Similarity=0.429  Sum_probs=44.0

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLS   59 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~   59 (175)
                      +|++++|++. .+|.+++.++.|+.|+++-|.|. .+|..|+.++.|+.|||++|+++
T Consensus        60 vln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~  115 (264)
T KOG0617|consen   60 VLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLN  115 (264)
T ss_pred             hhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccc
Confidence            5777888887 67888888888888888888877 67777888888888888777765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.65  E-value=1.8e-08  Score=81.93  Aligned_cols=80  Identities=28%  Similarity=0.428  Sum_probs=58.8

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccC----------------------ccCchh-hhCCCCCCEEeccCCcC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFF----------------------GGISSS-LSRLSRLSVMDLSYNNL   58 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~----------------------g~iP~~-~~~l~~L~~L~ls~N~l   58 (175)
                      .|+|++|-+. .+|.+++.+..|+.||+|+|.|.                      |.+|.+ +.+|.+|.+|||.+|.+
T Consensus       439 ~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl  517 (565)
T KOG0472|consen  439 FLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL  517 (565)
T ss_pred             eeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence            5777777776 68888888888888888887765                      233333 66777888888888888


Q ss_pred             CCCCCCCcccCCCCeeeccCccCC
Q 039964           59 SGKIPSGTQLQSFNALTYAGNELC   82 (175)
Q Consensus        59 ~g~iP~~~~~~~l~~l~~~~N~l~   82 (175)
                      ...+|..+.++++.++.++||.+.
T Consensus       518 q~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  518 QQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhCChhhccccceeEEEecCCccC
Confidence            766666677888888888888665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.58  E-value=8.7e-09  Score=88.04  Aligned_cols=79  Identities=28%  Similarity=0.302  Sum_probs=60.1

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchh-hhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSS-LSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N   79 (175)
                      ++||||+|+|. ..|..+..-.++-.|+||+|++. +||.+ +.+++.|-.||||+|.|...+|....+..|+.+.+++|
T Consensus       106 t~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  106 TILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN  183 (1255)
T ss_pred             eeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence            36788888887 67887777778888888888887 67765 45788888888888888877776666677777777777


Q ss_pred             cC
Q 039964           80 EL   81 (175)
Q Consensus        80 ~l   81 (175)
                      .|
T Consensus       184 PL  185 (1255)
T KOG0444|consen  184 PL  185 (1255)
T ss_pred             hh
Confidence            54

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.45  E-value=1.6e-07  Score=53.35  Aligned_cols=37  Identities=43%  Similarity=0.581  Sum_probs=29.2

Q ss_pred             cccceeeccccccCccCchhhhCCCCCCEEeccCCcCC
Q 039964           22 KSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLS   59 (175)
Q Consensus        22 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~   59 (175)
                      ++|+.|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            46788888888888 67777888888888888888877

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.38  E-value=7.5e-08  Score=76.03  Aligned_cols=76  Identities=28%  Similarity=0.258  Sum_probs=63.8

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      .||||+|.++ .|-++..-+|.++.|++|+|.+. .+. +++.+++|+.||||+|.|+...-....+.+...+.+++|.
T Consensus       288 elDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  288 ELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK  363 (490)
T ss_pred             hccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence            5899999998 78999999999999999999997 554 4899999999999999998554444566777777777773

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.38  E-value=1.4e-07  Score=69.50  Aligned_cols=80  Identities=30%  Similarity=0.401  Sum_probs=28.7

Q ss_pred             CEEEeecCccccCCChhhc-CCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIG-QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~-~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~   78 (175)
                      +.|+|++|.++ .| +.++ .+.+|+.||||+|.++ .++ .+..++.|++|++++|.++..-+.. ..+++|..+++++
T Consensus        22 ~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   22 RELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred             ccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence            46899999998 45 4566 5889999999999999 665 4888999999999999999543322 3578999999999


Q ss_pred             ccCCCC
Q 039964           79 NELCGL   84 (175)
Q Consensus        79 N~l~~~   84 (175)
                      |.+...
T Consensus        98 N~I~~l  103 (175)
T PF14580_consen   98 NKISDL  103 (175)
T ss_dssp             S---SC
T ss_pred             CcCCCh
Confidence            987643

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.36  E-value=1.1e-07  Score=77.44  Aligned_cols=77  Identities=27%  Similarity=0.284  Sum_probs=66.4

Q ss_pred             EEeecCccccCCChhhc-CCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964            3 LACVHFSLTGQITPKIG-QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL   81 (175)
Q Consensus         3 L~Ls~N~l~g~iP~~~~-~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l   81 (175)
                      |+++.|+++ .+|.+.. +++++..|||..|+++ ++|+.+.-+.+|+.||+|+|.+++.+++.+.+ .+..+.+.||.+
T Consensus       233 lh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  233 LHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             HHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence            455667776 6777766 8999999999999999 89999999999999999999999888887777 788889999976


Q ss_pred             C
Q 039964           82 C   82 (175)
Q Consensus        82 ~   82 (175)
                      .
T Consensus       310 r  310 (565)
T KOG0472|consen  310 R  310 (565)
T ss_pred             H
Confidence            4

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.34  E-value=5.1e-08  Score=82.62  Aligned_cols=82  Identities=28%  Similarity=0.260  Sum_probs=46.0

Q ss_pred             EEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC----cccCCCCeeeccC
Q 039964            3 LACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG----TQLQSFNALTYAG   78 (175)
Q Consensus         3 L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~----~~~~~l~~l~~~~   78 (175)
                      |+||.|+++..-+..|..|.+|+.|+|++|.++-.--..|..+++|+.|||.+|.+++.|-+.    ..+++|+.+.+.|
T Consensus       322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g  401 (873)
T KOG4194|consen  322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG  401 (873)
T ss_pred             EeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence            444444444333334444444444444444444222223555777778888888887777664    2356677777777


Q ss_pred             ccCCCC
Q 039964           79 NELCGL   84 (175)
Q Consensus        79 N~l~~~   84 (175)
                      |++...
T Consensus       402 Nqlk~I  407 (873)
T KOG4194|consen  402 NQLKSI  407 (873)
T ss_pred             ceeeec
Confidence            766543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.33  E-value=1.3e-07  Score=81.04  Aligned_cols=82  Identities=33%  Similarity=0.431  Sum_probs=64.0

Q ss_pred             EEeecCcccc-CCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC--cccCCCCeeeccCc
Q 039964            3 LACVHFSLTG-QITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFNALTYAGN   79 (175)
Q Consensus         3 L~Ls~N~l~g-~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~--~~~~~l~~l~~~~N   79 (175)
                      +.+.+|+|.. .||..+..|..|..||||+|+|. .+|..+..-+.+-.|+||+|++. .||..  ..+..|..++++.|
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence            4455666653 38888888888889999999988 88888888888888999999887 66664  55667778889999


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .|...|+
T Consensus       161 rLe~LPP  167 (1255)
T KOG0444|consen  161 RLEMLPP  167 (1255)
T ss_pred             hhhhcCH
Confidence            8876643

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.27  E-value=1.8e-07  Score=79.36  Aligned_cols=63  Identities=27%  Similarity=0.116  Sum_probs=42.3

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS   64 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~   64 (175)
                      +|+|+.|+++..--.++-+|+.|+.||||+|.+.-.-++++...++|+.||||+|+++...+.
T Consensus       273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~  335 (873)
T KOG4194|consen  273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG  335 (873)
T ss_pred             eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence            567777777655555566677777777777777655566666677777777777777655544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.25  E-value=1.9e-07  Score=82.51  Aligned_cols=77  Identities=31%  Similarity=0.442  Sum_probs=53.7

Q ss_pred             CEEEeecCccccCCCh-hhcCCcccceeeccccccCccCch----------------------hhhCCCCCCEEeccCCc
Q 039964            1 MWLACVHFSLTGQITP-KIGQLKSLDFLDLSRNQFFGGISS----------------------SLSRLSRLSVMDLSYNN   57 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~-~~~~l~~L~~L~Ls~N~l~g~iP~----------------------~~~~l~~L~~L~ls~N~   57 (175)
                      ++|+|++|+|. .+|. .+.++..|+.|+||+|.|+ .+|.                      ++..++.|+.+|+|.|+
T Consensus       386 KVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  386 KVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNN  463 (1081)
T ss_pred             eeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccch
Confidence            36778888776 5563 4667777777888887776 4444                      35667778888888888


Q ss_pred             CCC-CCCCCcccCCCCeeeccCc
Q 039964           58 LSG-KIPSGTQLQSFNALTYAGN   79 (175)
Q Consensus        58 l~g-~iP~~~~~~~l~~l~~~~N   79 (175)
                      |+- .+|.....++|+.++++||
T Consensus       464 L~~~~l~~~~p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  464 LSEVTLPEALPSPNLKYLDLSGN  486 (1081)
T ss_pred             hhhhhhhhhCCCcccceeeccCC
Confidence            863 3444444477888888888

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.24  E-value=9e-07  Score=50.28  Aligned_cols=37  Identities=30%  Similarity=0.403  Sum_probs=32.7

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGIS   39 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP   39 (175)
                      ++|++++|+++ .+|+++++|++|+.|++++|.++ .+|
T Consensus         4 ~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    4 EELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred             eEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence            58999999999 79989999999999999999998 554

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.17  E-value=1.9e-07  Score=65.85  Aligned_cols=77  Identities=16%  Similarity=0.224  Sum_probs=60.5

Q ss_pred             EEEeecCccccCCChhhcCC-cccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQL-KSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ..+||+|.|. ..|+.|... +.++.|+|++|.++ .+|.++..++.|+.|++++|.+...+-....+.+|..++..+|.
T Consensus        57 ~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen   57 KISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             EEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence            3588999998 678777655 48899999999999 89999999999999999999998554443445666666666663

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.13  E-value=3.8e-07  Score=80.63  Aligned_cols=80  Identities=29%  Similarity=0.362  Sum_probs=64.9

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCch-hhhCCCCCCEEeccCCcCCCCCCC----------------
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISS-SLSRLSRLSVMDLSYNNLSGKIPS----------------   64 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~L~ls~N~l~g~iP~----------------   64 (175)
                      .|.|.+|.|+..+-+-+-...+|+.|+|++|+|. .+|+ .+.++..|++|+||+|+|+. +|+                
T Consensus       363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN  440 (1081)
T KOG0618|consen  363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSN  440 (1081)
T ss_pred             HHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCC
Confidence            4678899999888888999999999999999998 7776 47889999999999999984 443                


Q ss_pred             -------CcccCCCCeeeccCccCCC
Q 039964           65 -------GTQLQSFNALTYAGNELCG   83 (175)
Q Consensus        65 -------~~~~~~l~~l~~~~N~l~~   83 (175)
                             ..++..++.++++.|.|..
T Consensus       441 ~l~~fPe~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  441 QLLSFPELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             ceeechhhhhcCcceEEecccchhhh
Confidence                   2345667777888776653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.09  E-value=1.3e-07  Score=81.88  Aligned_cols=80  Identities=33%  Similarity=0.343  Sum_probs=55.5

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchh----------------------hhCCCCCCEEeccCCcC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSS----------------------LSRLSRLSVMDLSYNNL   58 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~----------------------~~~l~~L~~L~ls~N~l   58 (175)
                      ++||||+|+++. . ..+..++.|.+|||++|.|. .+|..                      +.+|.+|+.||+++|-+
T Consensus       190 e~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll  266 (1096)
T KOG1859|consen  190 ESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLL  266 (1096)
T ss_pred             hhhccchhhhhh-h-HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhh
Confidence            468899999873 3 36788888999999999887 55532                      34577777888888877


Q ss_pred             CCCCCC--CcccCCCCeeeccCccCCC
Q 039964           59 SGKIPS--GTQLQSFNALTYAGNELCG   83 (175)
Q Consensus        59 ~g~iP~--~~~~~~l~~l~~~~N~l~~   83 (175)
                      ++.--=  ...+..|..+++.||.+|-
T Consensus       267 ~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  267 SEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            643211  1334566778888997763

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.06  E-value=9.8e-06  Score=72.00  Aligned_cols=57  Identities=25%  Similarity=0.348  Sum_probs=28.1

Q ss_pred             ccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccCCCC
Q 039964           23 SLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNELCGL   84 (175)
Q Consensus        23 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l~~~   84 (175)
                      +|+.|+|++|++. .+|..+.  ++|+.|++++|+++. +|.. ...+|+.+++++|.|.+.
T Consensus       242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~-l~~sL~~L~Ls~N~Lt~L  298 (754)
T PRK15370        242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPEN-LPEELRYLSVYDNSIRTL  298 (754)
T ss_pred             cccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccc-cCCCCcEEECCCCccccC
Confidence            3444444444444 3444332  356666666666663 3432 123556666666655544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.97  E-value=1.2e-06  Score=74.14  Aligned_cols=83  Identities=29%  Similarity=0.418  Sum_probs=57.5

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCC----------------------CCEEeccCCcCC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSR----------------------LSVMDLSYNNLS   59 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~----------------------L~~L~ls~N~l~   59 (175)
                      +|-+++|+++ .+|++++.+.+|..||.+.|.+. .+|+.++.+.+                      |..||+|.|+++
T Consensus       147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis  224 (722)
T KOG0532|consen  147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS  224 (722)
T ss_pred             eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee
Confidence            4566777776 67777777777777777777766 55555444333                      557778888877


Q ss_pred             CCCCC-CcccCCCCeeeccCccCCCCCCC
Q 039964           60 GKIPS-GTQLQSFNALTYAGNELCGLPLP   87 (175)
Q Consensus        60 g~iP~-~~~~~~l~~l~~~~N~l~~~p~~   87 (175)
                       .+|. ...++.|+.+.+++|.|..+|..
T Consensus       225 -~iPv~fr~m~~Lq~l~LenNPLqSPPAq  252 (722)
T KOG0532|consen  225 -YLPVDFRKMRHLQVLQLENNPLQSPPAQ  252 (722)
T ss_pred             -ecchhhhhhhhheeeeeccCCCCCChHH
Confidence             4444 36778888899999988877543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.96  E-value=6.5e-06  Score=73.18  Aligned_cols=36  Identities=25%  Similarity=0.404  Sum_probs=20.7

Q ss_pred             CCEEeccCCcCCCCCCCC-cccCCCCeeeccCccCCCC
Q 039964           48 LSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNELCGL   84 (175)
Q Consensus        48 L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~l~~~   84 (175)
                      |+.|++++|+++ .+|.. ..+.++..+++++|.|++.
T Consensus       424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence            344455555554 34433 4456677778888877654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.92  E-value=2.1e-05  Score=69.91  Aligned_cols=77  Identities=21%  Similarity=0.313  Sum_probs=49.1

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL   81 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l   81 (175)
                      .|+|++|.++ .+|..+.  .+|+.|++++|+|+ .+|..+.  .+|+.|+|++|++. .+|.. ...+|+.+++++|.+
T Consensus       203 ~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~-l~s~L~~L~Ls~N~L  274 (754)
T PRK15370        203 TLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPER-LPSALQSLDLFHNKI  274 (754)
T ss_pred             EEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChh-HhCCCCEEECcCCcc
Confidence            4666667666 4665544  46777777777776 5665443  35777777777776 44543 224678888888877


Q ss_pred             CCCCC
Q 039964           82 CGLPL   86 (175)
Q Consensus        82 ~~~p~   86 (175)
                      ...|.
T Consensus       275 ~~LP~  279 (754)
T PRK15370        275 SCLPE  279 (754)
T ss_pred             Ccccc
Confidence            76553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.90  E-value=8.6e-07  Score=62.62  Aligned_cols=79  Identities=20%  Similarity=0.239  Sum_probs=62.1

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc-
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN-   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N-   79 (175)
                      +.|||++|.++ .+|.++..++.|+.|+++.|.|. ..|..+..+.++..||...|... .+|.....+++..+.--|| 
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne  156 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE  156 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence            35899999998 89999999999999999999999 77888888999999999999887 6666533344433332244 


Q ss_pred             cCC
Q 039964           80 ELC   82 (175)
Q Consensus        80 ~l~   82 (175)
                      .+.
T Consensus       157 pl~  159 (177)
T KOG4579|consen  157 PLG  159 (177)
T ss_pred             ccc
Confidence            443

>PLN03210 Resistant to P

Probab=97.90  E-value=3.2e-05  Score=71.95  Aligned_cols=77  Identities=22%  Similarity=0.251  Sum_probs=38.9

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN   79 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N   79 (175)
                      .|+|+++..-+.+|. +..+++|+.|+|++|..-..+|..+.++++|+.|++++|...+.+|....+.+|..+++++|
T Consensus       638 ~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc  714 (1153)
T PLN03210        638 NIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC  714 (1153)
T ss_pred             EEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCC
Confidence            344444433234442 44455555555555443345555555666666666665444444554444455555555554

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=97.90  E-value=2.4e-05  Score=72.85  Aligned_cols=61  Identities=18%  Similarity=0.241  Sum_probs=43.8

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIP   63 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP   63 (175)
                      .|+|++|...+.+|..++++++|+.|++++|..-+.+|..+ ++++|+.|++++|.....+|
T Consensus       782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p  842 (1153)
T PLN03210        782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP  842 (1153)
T ss_pred             heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence            57888887777899999999999999999875445777654 56666666666654333333

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.87  E-value=7.3e-06  Score=67.42  Aligned_cols=79  Identities=37%  Similarity=0.482  Sum_probs=38.9

Q ss_pred             EEEeecCccccCCChhhcCCc-ccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLK-SLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      .|++.+|.++ .||+....+. +|+.|++++|.+. .+|..+..++.|+.|++++|+++-..+.......+..+++++|.
T Consensus       120 ~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~  197 (394)
T COG4886         120 SLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK  197 (394)
T ss_pred             EEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc
Confidence            3455555555 4555444443 5555555555555 44444555555555555555555332222234444445555544


Q ss_pred             CC
Q 039964           81 LC   82 (175)
Q Consensus        81 l~   82 (175)
                      +.
T Consensus       198 i~  199 (394)
T COG4886         198 IS  199 (394)
T ss_pred             cc
Confidence            43

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.86  E-value=9.5e-06  Score=72.15  Aligned_cols=58  Identities=28%  Similarity=0.193  Sum_probs=46.8

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS   64 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~   64 (175)
                      .|++++|.|+ .+|..+   .+|+.|++++|+|+ .+|..+.++++|+.|+|++|.|+|.+|.
T Consensus       406 ~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        406 ELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             EEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            4666777766 366432   45778888999988 8999999999999999999999998776

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.86  E-value=3.6e-06  Score=66.68  Aligned_cols=77  Identities=19%  Similarity=0.281  Sum_probs=50.9

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      +.|++|+|.+. .+-. +..|++|+.||||+|.|+ .+-..-..+.+.++|.|+.|.+. .+.....+-++..+++.+|+
T Consensus       310 r~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LSGL~KLYSLvnLDl~~N~  385 (490)
T KOG1259|consen  310 RRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQ  385 (490)
T ss_pred             eEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhhhhHhhhhheeccccccc
Confidence            47999999997 4444 889999999999999998 44444445566666666666554 22222334445555555554


Q ss_pred             C
Q 039964           81 L   81 (175)
Q Consensus        81 l   81 (175)
                      +
T Consensus       386 I  386 (490)
T KOG1259|consen  386 I  386 (490)
T ss_pred             h
Confidence            3

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.83  E-value=5.8e-06  Score=67.39  Aligned_cols=81  Identities=22%  Similarity=0.164  Sum_probs=66.3

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      +.|||++|.+++.-+.+|..+..++.|.|..|++.-.--..|.++..|++|+|.+|+++..-|.+ ..+.++..+++-+|
T Consensus       277 ~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  277 RKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN  356 (498)
T ss_pred             eEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence            36889999998888888888889999999999887333446788999999999999999888876 55667888888888


Q ss_pred             cC
Q 039964           80 EL   81 (175)
Q Consensus        80 ~l   81 (175)
                      .+
T Consensus       357 p~  358 (498)
T KOG4237|consen  357 PF  358 (498)
T ss_pred             cc
Confidence            44

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.77  E-value=9.6e-06  Score=64.33  Aligned_cols=38  Identities=26%  Similarity=0.420  Sum_probs=16.1

Q ss_pred             cccceeeccccccCcc----CchhhhCCCCCCEEeccCCcCC
Q 039964           22 KSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNLS   59 (175)
Q Consensus        22 ~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l~   59 (175)
                      ++|+.|++++|.+++.    ++..+..++.|++|++++|.++
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            4444444444444421    1222333444444444444444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.75  E-value=1.2e-05  Score=63.82  Aligned_cols=83  Identities=24%  Similarity=0.298  Sum_probs=61.8

Q ss_pred             CEEEeecCccccC----CChhhcCCcccceeeccccccCcc----CchhhhCCCCCCEEeccCCcCCCCCCC----C-cc
Q 039964            1 MWLACVHFSLTGQ----ITPKIGQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNLSGKIPS----G-TQ   67 (175)
Q Consensus         1 ~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l~g~iP~----~-~~   67 (175)
                      +.|++++|.+++.    ++..+..+.+|+.|++++|.+++.    ++..+..+++|+.|++++|.+++....    . ..
T Consensus       140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~  219 (319)
T cd00116         140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS  219 (319)
T ss_pred             eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc
Confidence            4689999998843    444566778899999999999852    445566778999999999988744322    1 34


Q ss_pred             cCCCCeeeccCccCCC
Q 039964           68 LQSFNALTYAGNELCG   83 (175)
Q Consensus        68 ~~~l~~l~~~~N~l~~   83 (175)
                      +++++.+++++|.+.+
T Consensus       220 ~~~L~~L~ls~n~l~~  235 (319)
T cd00116         220 LKSLEVLNLGDNNLTD  235 (319)
T ss_pred             cCCCCEEecCCCcCch
Confidence            5678999999887653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.70  E-value=4.5e-06  Score=70.79  Aligned_cols=82  Identities=26%  Similarity=0.344  Sum_probs=57.2

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL   81 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l   81 (175)
                      .+||+.|++. .+|.++..+..|+.+.|.+|.+. .||..+.++..|..|||+.|+++ ..|....+--|+.+-+++|++
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNNkl  155 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNNKL  155 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecCcc
Confidence            3577888887 78887777777777778888777 67777777777777888877777 344333333466677777766


Q ss_pred             CCCCC
Q 039964           82 CGLPL   86 (175)
Q Consensus        82 ~~~p~   86 (175)
                      ...|.
T Consensus       156 ~~lp~  160 (722)
T KOG0532|consen  156 TSLPE  160 (722)
T ss_pred             ccCCc
Confidence            55443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.67  E-value=2.3e-05  Score=70.76  Aligned_cols=77  Identities=27%  Similarity=0.327  Sum_probs=61.6

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~   78 (175)
                      ++||||+|.=-+.+|+++++|-+|+.|||++..++ .+|..+.++..|.+||+.++.-...+|.. ..+++|+.+.+..
T Consensus       574 rVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  574 RVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             EEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            47899988766689999999999999999999998 88999999999999999887765566655 3367777776533

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.58  E-value=1.9e-05  Score=64.88  Aligned_cols=76  Identities=29%  Similarity=0.374  Sum_probs=60.6

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      +.|++++|.+. .+|..+..++.|+.|++++|+++ .+|...+.++.|+.|++++|++. .+|.. .....+..+.+++|
T Consensus       143 ~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         143 KELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             ccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            36889999998 78888999999999999999999 88887778899999999999998 44443 23344666666666

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.38  E-value=8.3e-05  Score=61.89  Aligned_cols=77  Identities=29%  Similarity=0.316  Sum_probs=44.8

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL   81 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l   81 (175)
                      .|++..|.+. .|...+..+++|+.||+++|.++ .+. .+..++.|+.|++++|.++ .++....+..++.+++++|.+
T Consensus        99 ~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~N~i~-~~~~~~~l~~L~~l~l~~n~i  174 (414)
T KOG0531|consen   99 ALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSGNLIS-DISGLESLKSLKLLDLSYNRI  174 (414)
T ss_pred             eeeccccchh-hcccchhhhhcchheeccccccc-ccc-chhhccchhhheeccCcch-hccCCccchhhhcccCCcchh
Confidence            4666666666 34433556667777777777776 332 2455666666777776665 344433455556666666644


Q ss_pred             C
Q 039964           82 C   82 (175)
Q Consensus        82 ~   82 (175)
                      .
T Consensus       175 ~  175 (414)
T KOG0531|consen  175 V  175 (414)
T ss_pred             h
Confidence            4

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.36  E-value=2.8e-05  Score=67.92  Aligned_cols=75  Identities=29%  Similarity=0.400  Sum_probs=57.2

Q ss_pred             EeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCccCC
Q 039964            4 ACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNELC   82 (175)
Q Consensus         4 ~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~l~   82 (175)
                      +.+.|.|. ..-+.+.-++.|++|||++|+++ .+. .+..++.|++|||++|.|. .+|.. ..-..|..+.+.+|.+.
T Consensus       170 ~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~  245 (1096)
T KOG1859|consen  170 SFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT  245 (1096)
T ss_pred             hcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH
Confidence            45677776 56777888899999999999998 554 7899999999999999998 56654 11123667777777443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.34  E-value=2.4e-05  Score=63.92  Aligned_cols=62  Identities=19%  Similarity=0.198  Sum_probs=43.8

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEec-cCCcCCCCCCC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDL-SYNNLSGKIPS   64 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~l-s~N~l~g~iP~   64 (175)
                      .++|..|.++..-|..|+.+++|+.||||+|+++-.-|..|..+.+|..|-+ ++|+++ .+|.
T Consensus        71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k  133 (498)
T KOG4237|consen   71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPK  133 (498)
T ss_pred             EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhh
Confidence            5778888888444456788888888888888888666778888777765544 447776 4443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.14  E-value=0.00018  Score=34.41  Aligned_cols=21  Identities=48%  Similarity=0.708  Sum_probs=13.4

Q ss_pred             ccceeeccccccCccCchhhhC
Q 039964           23 SLDFLDLSRNQFFGGISSSLSR   44 (175)
Q Consensus        23 ~L~~L~Ls~N~l~g~iP~~~~~   44 (175)
                      +|+.|||++|+++ .+|+++++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566777777776 66665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.08  E-value=0.00073  Score=50.77  Aligned_cols=58  Identities=26%  Similarity=0.381  Sum_probs=27.5

Q ss_pred             ccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCccCC
Q 039964           23 SLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNELC   82 (175)
Q Consensus        23 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~l~   82 (175)
                      +...+||++|.+. .++ .+..++.|.+|.|++|.++..-|.. ..++++..+.+.+|+++
T Consensus        43 ~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             ccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            3444555555553 222 2444555555555555555444443 23334555555555444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.78  E-value=0.00054  Score=57.02  Aligned_cols=79  Identities=30%  Similarity=0.401  Sum_probs=60.2

Q ss_pred             EEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccCC
Q 039964            3 LACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNELC   82 (175)
Q Consensus         3 L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l~   82 (175)
                      +++..|.+. .+-..+..+.+|+.|++.+|.+. .+...+..+++|++|++++|+++...+ ...+..|..+++.+|.+.
T Consensus        77 l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~  153 (414)
T KOG0531|consen   77 LNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLIS  153 (414)
T ss_pred             hccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc-hhhccchhhheeccCcch
Confidence            345566665 34445778899999999999998 555447889999999999999985444 345566889999999766


Q ss_pred             CC
Q 039964           83 GL   84 (175)
Q Consensus        83 ~~   84 (175)
                      ..
T Consensus       154 ~~  155 (414)
T KOG0531|consen  154 DI  155 (414)
T ss_pred             hc
Confidence            54

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.68  E-value=0.001  Score=60.45  Aligned_cols=81  Identities=27%  Similarity=0.238  Sum_probs=63.1

Q ss_pred             EEEeecCc--cccCCChh-hcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccC
Q 039964            2 WLACVHFS--LTGQITPK-IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAG   78 (175)
Q Consensus         2 ~L~Ls~N~--l~g~iP~~-~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~   78 (175)
                      .|-+..|.  +. .++.+ |..++.|..||||+|.=-+.+|..++.|-+|++||+++..++..++....+..|..|++..
T Consensus       549 tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~  627 (889)
T KOG4658|consen  549 TLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV  627 (889)
T ss_pred             eEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence            45566664  33 45544 7789999999999877667999999999999999999999984444447888899999887


Q ss_pred             c-cCCC
Q 039964           79 N-ELCG   83 (175)
Q Consensus        79 N-~l~~   83 (175)
                      + .+..
T Consensus       628 ~~~l~~  633 (889)
T KOG4658|consen  628 TGRLES  633 (889)
T ss_pred             cccccc
Confidence            7 4443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.67  E-value=0.0018  Score=48.76  Aligned_cols=80  Identities=20%  Similarity=0.230  Sum_probs=60.9

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhh-CCCCCCEEeccCCcCCC--CCCCCcccCCCCeeeccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLS-RLSRLSVMDLSYNNLSG--KIPSGTQLQSFNALTYAG   78 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~L~ls~N~l~g--~iP~~~~~~~l~~l~~~~   78 (175)
                      .+||++|.+. .++ -|..++.|..|.|++|.++ .|-+.+. -++.|+.|.|.+|.+..  .+-....++.|+.+.+-+
T Consensus        46 ~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   46 AIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             eecccccchh-hcc-cCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            5789999885 443 4788899999999999999 5544454 45789999999998862  233335667889999999


Q ss_pred             ccCCCC
Q 039964           79 NELCGL   84 (175)
Q Consensus        79 N~l~~~   84 (175)
                      |..|..
T Consensus       123 Npv~~k  128 (233)
T KOG1644|consen  123 NPVEHK  128 (233)
T ss_pred             Cchhcc
Confidence            987754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.00044  Score=57.22  Aligned_cols=34  Identities=26%  Similarity=0.161  Sum_probs=19.9

Q ss_pred             EEEeecCccccCCC--hhhcCCcccceeeccccccC
Q 039964            2 WLACVHFSLTGQIT--PKIGQLKSLDFLDLSRNQFF   35 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP--~~~~~l~~L~~L~Ls~N~l~   35 (175)
                      .||||+|-|...-|  .-..+|++|+.|+||.|.|.
T Consensus       150 ~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~  185 (505)
T KOG3207|consen  150 DLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS  185 (505)
T ss_pred             eecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence            46667766653222  33456667777777777664

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.36  E-value=0.0015  Score=31.19  Aligned_cols=20  Identities=25%  Similarity=0.287  Sum_probs=16.7

Q ss_pred             CEEEeecCccccCCChhhcCC
Q 039964            1 MWLACVHFSLTGQITPKIGQL   21 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l   21 (175)
                      ++|||++|+++ .||++|++|
T Consensus         3 ~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    3 EYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             SEEEETSSEES-EEGTTTTT-
T ss_pred             cEEECCCCcCE-eCChhhcCC
Confidence            58999999999 899887653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.11  E-value=0.0036  Score=48.57  Aligned_cols=63  Identities=24%  Similarity=0.365  Sum_probs=42.0

Q ss_pred             hhcCCcccceeecccc--ccCccCchhhhCCCCCCEEeccCCcCCC--CCCCCcccCCCCeeeccCc
Q 039964           17 KIGQLKSLDFLDLSRN--QFFGGISSSLSRLSRLSVMDLSYNNLSG--KIPSGTQLQSFNALTYAGN   79 (175)
Q Consensus        17 ~~~~l~~L~~L~Ls~N--~l~g~iP~~~~~l~~L~~L~ls~N~l~g--~iP~~~~~~~l~~l~~~~N   79 (175)
                      .+..|+.|+.|++|.|  ..++.++.....+++|++|++|.|++.-  .++....+.+|..+++..+
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC  126 (260)
T ss_pred             cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence            3566788888899988  5566666656667889999999888762  2222234455555555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.85  E-value=0.0031  Score=50.28  Aligned_cols=33  Identities=27%  Similarity=0.276  Sum_probs=16.6

Q ss_pred             EEeecCcccc--CCChhhcCCcccceeeccccccC
Q 039964            3 LACVHFSLTG--QITPKIGQLKSLDFLDLSRNQFF   35 (175)
Q Consensus         3 L~Ls~N~l~g--~iP~~~~~l~~L~~L~Ls~N~l~   35 (175)
                      |||.+|.++.  .|-.-+.+||.|+.|+|++|+|+
T Consensus        76 lDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~  110 (418)
T KOG2982|consen   76 LDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS  110 (418)
T ss_pred             hhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence            4555555542  13333445555555555555555

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.0027  Score=52.76  Aligned_cols=60  Identities=28%  Similarity=0.237  Sum_probs=27.0

Q ss_pred             CcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCC--CCCcccCCCCeeeccCcc
Q 039964           21 LKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKI--PSGTQLQSFNALTYAGNE   80 (175)
Q Consensus        21 l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~i--P~~~~~~~l~~l~~~~N~   80 (175)
                      +|+|+.|+|..|..-+.--.+...+..|+.|||++|++....  +..+.++.|..++++.++
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg  282 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG  282 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC
Confidence            344455555554311111222334555666666666655332  222444445555544443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.52  E-value=0.0072  Score=26.90  Aligned_cols=13  Identities=46%  Similarity=0.667  Sum_probs=4.7

Q ss_pred             CCCEEeccCCcCC
Q 039964           47 RLSVMDLSYNNLS   59 (175)
Q Consensus        47 ~L~~L~ls~N~l~   59 (175)
                      +|+.|++++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.60  E-value=0.028  Score=27.61  Aligned_cols=18  Identities=39%  Similarity=0.464  Sum_probs=9.7

Q ss_pred             cccceeeccccccCccCch
Q 039964           22 KSLDFLDLSRNQFFGGISS   40 (175)
Q Consensus        22 ~~L~~L~Ls~N~l~g~iP~   40 (175)
                      ++|+.|+|++|+++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            44555555555555 4444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.60  E-value=0.028  Score=27.61  Aligned_cols=18  Identities=39%  Similarity=0.464  Sum_probs=9.7

Q ss_pred             cccceeeccccccCccCch
Q 039964           22 KSLDFLDLSRNQFFGGISS   40 (175)
Q Consensus        22 ~~L~~L~Ls~N~l~g~iP~   40 (175)
                      ++|+.|+|++|+++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            44555555555555 4444

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=94.22  E-value=0.043  Score=39.21  Aligned_cols=15  Identities=7%  Similarity=0.060  Sum_probs=7.3

Q ss_pred             eeeeehhHHHHHHHH
Q 039964          118 FYVSLILGFFVGFWG  132 (175)
Q Consensus       118 ~~~~~~~g~~~~~~~  132 (175)
                      +++|+++|+.+.+++
T Consensus        50 IVIGvVVGVGg~ill   64 (154)
T PF04478_consen   50 IVIGVVVGVGGPILL   64 (154)
T ss_pred             EEEEEEecccHHHHH
Confidence            455555555444333

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.92  E-value=0.036  Score=43.09  Aligned_cols=69  Identities=19%  Similarity=0.373  Sum_probs=50.2

Q ss_pred             cCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCC--cCCCCCCCC-cccCCCCeeeccCccCC
Q 039964           12 GQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYN--NLSGKIPSG-TQLQSFNALTYAGNELC   82 (175)
Q Consensus        12 g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N--~l~g~iP~~-~~~~~l~~l~~~~N~l~   82 (175)
                      |.+....-.+..|+.|.+.+-.++ ++ ..+-.|+.|+.|++|.|  ...+.++.. ...+++.++++++|.+.
T Consensus        33 g~~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   33 GKLGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CCcccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            336666666777888888887776 33 23557889999999999  555555544 44589999999999765

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=93.73  E-value=0.086  Score=28.95  Aligned_cols=27  Identities=11%  Similarity=-0.016  Sum_probs=13.8

Q ss_pred             ceeeeeehhHHHHHHHHHHHHHhhccc
Q 039964          116 LGFYVSLILGFFVGFWGFCGTLLVKSS  142 (175)
Q Consensus       116 ~~~~~~~~~g~~~~~~~~~~~~~~~~~  142 (175)
                      ..+.+++++.++++++++.+++++.+|
T Consensus        11 vaIa~~VvVPV~vI~~vl~~~l~~~~r   37 (40)
T PF08693_consen   11 VAIAVGVVVPVGVIIIVLGAFLFFWYR   37 (40)
T ss_pred             EEEEEEEEechHHHHHHHHHHhheEEe
Confidence            345555566666555555444444333

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.72  E-value=0.041  Score=44.06  Aligned_cols=58  Identities=31%  Similarity=0.425  Sum_probs=41.3

Q ss_pred             CcccceeeccccccCc--cCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964           21 LKSLDFLDLSRNQFFG--GISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG   78 (175)
Q Consensus        21 l~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~   78 (175)
                      .+.+..|||..|.++.  .|-.-+.+|+.|++|++|.|.|+..|-.. ....++..+-+.|
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg  130 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG  130 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC
Confidence            4678899999999984  24445678999999999999998776544 2334444444333

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.24  E-value=0.21  Score=41.84  Aligned_cols=56  Identities=13%  Similarity=0.202  Sum_probs=36.2

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccc-cccCccCchhhhCCCCCCEEeccCC-cCCCCCCC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSR-NQFFGGISSSLSRLSRLSVMDLSYN-NLSGKIPS   64 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~L~ls~N-~l~g~iP~   64 (175)
                      +.|++++|.++ .+|. +.  .+|+.|++++ ++|+ .+|..+  .++|+.|++++| ++. .+|.
T Consensus        55 ~~L~Is~c~L~-sLP~-LP--~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~  112 (426)
T PRK15386         55 GRLYIKDCDIE-SLPV-LP--NELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPE  112 (426)
T ss_pred             CEEEeCCCCCc-ccCC-CC--CCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-cccc
Confidence            36889988887 5662 22  4688888876 5554 566544  246788888877 443 3443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.83  E-value=0.004  Score=48.03  Aligned_cols=54  Identities=7%  Similarity=-0.041  Sum_probs=29.8

Q ss_pred             EEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcC
Q 039964            3 LACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNL   58 (175)
Q Consensus         3 L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l   58 (175)
                      ||+|.|.+. ..|..++++..+..+++.+|+++ ..|.++..++.++.+++-.|.|
T Consensus        70 l~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   70 LDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             HhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence            344444444 45555555555555555555555 5555556666666555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.79  E-value=0.0068  Score=47.95  Aligned_cols=77  Identities=27%  Similarity=0.383  Sum_probs=44.2

Q ss_pred             EEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC---cccCCCCeeeccCc
Q 039964            3 LACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG---TQLQSFNALTYAGN   79 (175)
Q Consensus         3 L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~---~~~~~l~~l~~~~N   79 (175)
                      ||..++.|+ .| .-...|+.|+.|.||-|.++ ++ ..+..++.|++|+|-.|.+. .+-+.   ..+++|..|.+..|
T Consensus        24 LNcwg~~L~-DI-sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   24 LNCWGCGLD-DI-SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             hcccCCCcc-HH-HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccC
Confidence            445555554 22 22355677777777777777 33 23566777777777776544 12211   34556666667777


Q ss_pred             cCCCC
Q 039964           80 ELCGL   84 (175)
Q Consensus        80 ~l~~~   84 (175)
                      ..||.
T Consensus        99 PCc~~  103 (388)
T KOG2123|consen   99 PCCGE  103 (388)
T ss_pred             Ccccc
Confidence            66654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.77  E-value=0.033  Score=26.83  Aligned_cols=16  Identities=44%  Similarity=0.513  Sum_probs=8.5

Q ss_pred             cccceeeccccccCcc
Q 039964           22 KSLDFLDLSRNQFFGG   37 (175)
Q Consensus        22 ~~L~~L~Ls~N~l~g~   37 (175)
                      ++|+.|||++|.+++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            4566666666666543

...

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=91.55  E-value=0.067  Score=37.01  Aligned_cols=29  Identities=14%  Similarity=0.156  Sum_probs=17.4

Q ss_pred             eeeeeehhHHHHHHHHHHHHHhhcccchh
Q 039964          117 GFYVSLILGFFVGFWGFCGTLLVKSSWRH  145 (175)
Q Consensus       117 ~~~~~~~~g~~~~~~~~~~~~~~~~~~r~  145 (175)
                      ..++++++|+++++++++++++++.+|++
T Consensus        64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~   92 (122)
T PF01102_consen   64 PAIIGIIFGVMAGVIGIILLISYCIRRLR   92 (122)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cceeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence            45677777777777666655444443333

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.29  E-value=0.022  Score=44.07  Aligned_cols=77  Identities=18%  Similarity=0.035  Sum_probs=60.3

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N   79 (175)
                      ++||++.|++- .+..-|+.++.|..||++.|++. .+|..+.++..+..+++-.|+++-.+-+....+.+..++.-+|
T Consensus        45 tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~  121 (326)
T KOG0473|consen   45 TVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT  121 (326)
T ss_pred             eeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence            36899999986 56777888899999999999998 8899999998899999988888844433355555555555555

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=89.72  E-value=0.18  Score=24.98  Aligned_cols=13  Identities=46%  Similarity=0.503  Sum_probs=6.7

Q ss_pred             ccceeeccccccC
Q 039964           23 SLDFLDLSRNQFF   35 (175)
Q Consensus        23 ~L~~L~Ls~N~l~   35 (175)
                      +|+.|+.++|+|+
T Consensus         3 ~L~~L~vs~N~Lt   15 (26)
T smart00364        3 SLKELNVSNNQLT   15 (26)
T ss_pred             ccceeecCCCccc
Confidence            3455555555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=88.37  E-value=0.52  Score=42.15  Aligned_cols=42  Identities=24%  Similarity=0.390  Sum_probs=25.9

Q ss_pred             hhhCCCCCCEEeccCCcCCCCC--C-----CCcccCCCCeeeccCccCC
Q 039964           41 SLSRLSRLSVMDLSYNNLSGKI--P-----SGTQLQSFNALTYAGNELC   82 (175)
Q Consensus        41 ~~~~l~~L~~L~ls~N~l~g~i--P-----~~~~~~~l~~l~~~~N~l~   82 (175)
                      .+.+|+.|+.||+|........  .     ....+++|+.++.+|..+.
T Consensus       215 ~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  215 DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            3567888888888876544222  1     1134667777877776554

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=87.34  E-value=0.34  Score=26.18  Aligned_cols=12  Identities=25%  Similarity=0.387  Sum_probs=5.0

Q ss_pred             eehhHHHHHHHH
Q 039964          121 SLILGFFVGFWG  132 (175)
Q Consensus       121 ~~~~g~~~~~~~  132 (175)
                      ++++|+++++.+
T Consensus         7 aIIv~V~vg~~i   18 (38)
T PF02439_consen    7 AIIVAVVVGMAI   18 (38)
T ss_pred             hHHHHHHHHHHH
Confidence            344444444433

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.76  E-value=0.12  Score=41.08  Aligned_cols=61  Identities=18%  Similarity=0.140  Sum_probs=49.2

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCc--hhhhCCCCCCEEeccCCcCCCCCCC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGIS--SSLSRLSRLSVMDLSYNNLSGKIPS   64 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP--~~~~~l~~L~~L~ls~N~l~g~iP~   64 (175)
                      .+|-||-|.++..  ..+..++.|+.|.|..|.+. .+-  ..+.++++|+.|-|..|...|.-+.
T Consensus        44 EVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   44 EVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQ  106 (388)
T ss_pred             eeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccch
Confidence            3688999999843  34788899999999999997 443  2477899999999999988877654

>PRK15386 type III secretion protein GogB; Provisional

Probab=86.49  E-value=1.4  Score=36.97  Aligned_cols=11  Identities=18%  Similarity=0.295  Sum_probs=5.5

Q ss_pred             cccceeecccc
Q 039964           22 KSLDFLDLSRN   32 (175)
Q Consensus        22 ~~L~~L~Ls~N   32 (175)
                      .+|+.|++++|
T Consensus        94 ~nLe~L~Ls~C  104 (426)
T PRK15386         94 EGLEKLTVCHC  104 (426)
T ss_pred             hhhhheEccCc
Confidence            34555555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=86.27  E-value=0.25  Score=44.09  Aligned_cols=58  Identities=29%  Similarity=0.299  Sum_probs=31.8

Q ss_pred             EEEeecCc-cccCCChhhc-CCcccceeeccccccCc-cCchhhhCCCCCCEEeccCCcCC
Q 039964            2 WLACVHFS-LTGQITPKIG-QLKSLDFLDLSRNQFFG-GISSSLSRLSRLSVMDLSYNNLS   59 (175)
Q Consensus         2 ~L~Ls~N~-l~g~iP~~~~-~l~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~L~ls~N~l~   59 (175)
                      +||+++.. ++..-|..++ .||+|++|.+++=.+.. ..-.-..++++|..||+|+-+++
T Consensus       126 ~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  126 HLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             hcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence            56666653 2222333333 35777777777755532 12233456777777777775554

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=86.16  E-value=0.44  Score=41.03  Aligned_cols=62  Identities=24%  Similarity=0.339  Sum_probs=40.3

Q ss_pred             CcccceeeccccccCccCch---hhhCCCCCCEEeccCC--cCCCCCCCC--cccCCCCeeeccCccCCCC
Q 039964           21 LKSLDFLDLSRNQFFGGISS---SLSRLSRLSVMDLSYN--NLSGKIPSG--TQLQSFNALTYAGNELCGL   84 (175)
Q Consensus        21 l~~L~~L~Ls~N~l~g~iP~---~~~~l~~L~~L~ls~N--~l~g~iP~~--~~~~~l~~l~~~~N~l~~~   84 (175)
                      .+.+..++|++|+|. .+-.   --...+.|+.|+||+|  .+. .-++.  .....++.+.+.||.+|..
T Consensus       217 ~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc~t  285 (585)
T KOG3763|consen  217 FPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLCTT  285 (585)
T ss_pred             Ccceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCccccc
Confidence            466788899999986 3321   1234678999999999  333 12222  1223467788999998854

>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function

Probab=85.93  E-value=2.6  Score=33.30  Aligned_cols=37  Identities=8%  Similarity=-0.122  Sum_probs=17.7

Q ss_pred             ceeeeeehhHHHHHHHHHHHHHhhcccchhhhhhhhh
Q 039964          116 LGFYVSLILGFFVGFWGFCGTLLVKSSWRHHYYNFLP  152 (175)
Q Consensus       116 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~  152 (175)
                      +.+++++++|++++.++...++.+.+..|++..+.++
T Consensus       213 W~iv~g~~~G~~~L~ll~~lv~~~vr~krk~k~~eME  249 (278)
T PF06697_consen  213 WKIVVGVVGGVVLLGLLSLLVAMLVRYKRKKKIEEME  249 (278)
T ss_pred             EEEEEEehHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            3345566677666554444444444433333333333

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=85.74  E-value=0.65  Score=30.74  Aligned_cols=15  Identities=7%  Similarity=0.073  Sum_probs=8.1

Q ss_pred             ceeeeeehhHHHHHH
Q 039964          116 LGFYVSLILGFFVGF  130 (175)
Q Consensus       116 ~~~~~~~~~g~~~~~  130 (175)
                      ...++++++|.++++
T Consensus        65 ~gaiagi~vg~~~~v   79 (96)
T PTZ00382         65 TGAIAGISVAVVAVV   79 (96)
T ss_pred             cccEEEEEeehhhHH
Confidence            345666666555444

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=85.04  E-value=0.62  Score=25.18  Aligned_cols=29  Identities=10%  Similarity=0.125  Sum_probs=19.3

Q ss_pred             ceeeeeehhHHHHHHHHHHHHHhhcccch
Q 039964          116 LGFYVSLILGFFVGFWGFCGTLLVKSSWR  144 (175)
Q Consensus       116 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~r  144 (175)
                      ..+++++++|++++++.++....+.|+.+
T Consensus         6 IaIIv~V~vg~~iiii~~~~YaCcykk~~   34 (38)
T PF02439_consen    6 IAIIVAVVVGMAIIIICMFYYACCYKKHR   34 (38)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            45677788888887776666555555544

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.03  E-value=0.78  Score=22.90  Aligned_cols=14  Identities=43%  Similarity=0.558  Sum_probs=9.7

Q ss_pred             CCCCEEeccCCcCC
Q 039964           46 SRLSVMDLSYNNLS   59 (175)
Q Consensus        46 ~~L~~L~ls~N~l~   59 (175)
                      ++|++|||++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            45777777777764

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=84.57  E-value=1.2  Score=31.89  Aligned_cols=34  Identities=12%  Similarity=0.225  Sum_probs=20.5

Q ss_pred             ccccccceeeeeehhHHHHHHHHHHHHHhhcccch
Q 039964          110 EDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWR  144 (175)
Q Consensus       110 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r  144 (175)
                      +.+..+.++++|+.+++++++++++ .++|.|++|
T Consensus        46 knknIVIGvVVGVGg~ill~il~lv-f~~c~r~kk   79 (154)
T PF04478_consen   46 KNKNIVIGVVVGVGGPILLGILALV-FIFCIRRKK   79 (154)
T ss_pred             CCccEEEEEEecccHHHHHHHHHhh-eeEEEeccc
Confidence            3445578889998888777655444 333333333

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.30  E-value=0.94  Score=22.39  Aligned_cols=15  Identities=40%  Similarity=0.614  Sum_probs=10.9

Q ss_pred             CCCCCEEeccCCcCC
Q 039964           45 LSRLSVMDLSYNNLS   59 (175)
Q Consensus        45 l~~L~~L~ls~N~l~   59 (175)
                      ++.|+.|++++|+++
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            356778888888765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=83.94  E-value=1.1  Score=35.78  Aligned_cols=79  Identities=20%  Similarity=0.283  Sum_probs=44.9

Q ss_pred             EEEeecCccccC----CChhhcCCcccceeeccccccCcc----Cchh-------hhCCCCCCEEeccCCcCCCCCCCC-
Q 039964            2 WLACVHFSLTGQ----ITPKIGQLKSLDFLDLSRNQFFGG----ISSS-------LSRLSRLSVMDLSYNNLSGKIPSG-   65 (175)
Q Consensus         2 ~L~Ls~N~l~g~----iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~-------~~~l~~L~~L~ls~N~l~g~iP~~-   65 (175)
                      .++||+|-+.-.    +-..+.+-.+|+..++|.-. +|.    +|++       +-.|+.|+..+||+|-+....|+. 
T Consensus        34 evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L  112 (388)
T COG5238          34 EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEEL  112 (388)
T ss_pred             EEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHH
Confidence            456777765422    22223444555655555532 222    2322       456788888888888877665543 


Q ss_pred             ----cccCCCCeeeccCccC
Q 039964           66 ----TQLQSFNALTYAGNEL   81 (175)
Q Consensus        66 ----~~~~~l~~l~~~~N~l   81 (175)
                          ..-..+.++.+.+|.+
T Consensus       113 ~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         113 GDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HHHHhcCCCceeEEeecCCC
Confidence                2334577777777755

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=81.08  E-value=0.77  Score=37.50  Aligned_cols=41  Identities=27%  Similarity=0.346  Sum_probs=17.6

Q ss_pred             hcCCcccceeeccccccCcc----CchhhhCCCCCCEEeccCCcC
Q 039964           18 IGQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNL   58 (175)
Q Consensus        18 ~~~l~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l   58 (175)
                      +..+++|+.|||..|.|+-.    +...+..++.|+.|+++++.+
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence            34445555555555554411    112233344444555544444

>PF15102 TMEM154: TMEM154 protein family

Probab=80.35  E-value=1.4  Score=31.32  Aligned_cols=8  Identities=13%  Similarity=-0.072  Sum_probs=3.6

Q ss_pred             hcccchhh
Q 039964          139 VKSSWRHH  146 (175)
Q Consensus       139 ~~~~~r~~  146 (175)
                      ++||||.+
T Consensus        81 ~~kRkr~K   88 (146)
T PF15102_consen   81 YYKRKRTK   88 (146)
T ss_pred             EEeecccC
Confidence            34445443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	175
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-09
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-08

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 7   HFSLTGQITPKIGQLKSLDFLDLSRNQFFGGIXXXXXXXXXXXVMDLSYNNLSGKIPSGT 66
           H  ++G I  ++G L+ L+ LDLS N+  G I            +DLS NNLSG IP   
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 721
Query: 67  QLQSFNALTYAGNE-LCGLPLPNKCPT 92
           Q ++F    +  N  LCG PLP   P+
Sbjct: 722 QFETFPPAKFLNNPGLCGYPLPRCDPS 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 7   HFSLTGQITPKIGQLKSLDFLDLSRNQFFGGIXXXXXXXXXXXVMDLSYNNLSGKIPSGT 66
           H  ++G I  ++G L+ L+ LDLS N+  G I            +DLS NNLSG IP   
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724
Query: 67  QLQSFNALTYAGNE-LCGLPLPNKCPT 92
           Q ++F    +  N  LCG PLP   P+
Sbjct: 725 QFETFPPAKFLNNPGLCGYPLPRCDPS 751

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 17  KIGQLKSLDFLDLSRNQFFGGIXXXXXXXXXXXVMDLSYNNLSGKIPSGTQLQSFNALTY 76
           K+G  K+L+ LDL  N+ +G +            +++S+NNL G+IP G  LQ F+   Y
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298
Query: 77  AGNE-LCGLPLP 87
           A N+ LCG PLP
Sbjct: 299 ANNKCLCGSPLP 310

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	175
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  114 bits (287), Expect = 4e-30
 Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
            ++G I  ++G L+ L+ LDLS N+  G I  ++S L+ L+ +DLS NNLSG IP   Q 
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726

Query: 69  QSFNALTYAGN-ELCGLPLPNKCPTEESAPGPGK 101
           ++F    +  N  LCG PLP   P+        +
Sbjct: 727 ETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQ 760

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.6 bits (179), Expect = 1e-15
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQ 67
             TG+I P +     L  L LS N   G I SSL  LS+L  + L  N L G+IP     
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464

Query: 68  LQSFNALTYAGNELCGLPLPN 88
           +++   L    N+L G  +P+
Sbjct: 465 VKTLETLILDFNDLTG-EIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.6 bits (179), Expect = 1e-15
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG--- 65
            LTG+I   IG+L++L  L LS N F G I + L     L  +DL+ N  +G IP+    
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560

Query: 66  -TQLQSFNALT 75
            +   + N + 
Sbjct: 561 QSGKIAANFIA 571

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 1e-14
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
            LTG+I   +    +L+++ LS N+  G I   + RL  L+++ LS N+ SG IP+  +L
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA--EL 534

Query: 69  QSFNALTY---AGNELCGLPLP 87
               +L +     N   G  +P
Sbjct: 535 GDCRSLIWLDLNTNLFNG-TIP 555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.6 bits (171), Expect = 2e-14
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG--T 66
           + +  I P +G   +L  LD+S N+  G  S ++S  + L ++++S N   G IP     
Sbjct: 211 NFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK 269

Query: 67  QLQSFNALTYAGNELCGLPLPN 88
            LQ  +    A N+  G  +P+
Sbjct: 270 SLQYLSL---AENKFTG-EIPD 287

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS 64
            L G+I  ++  +K+L+ L L  N   G I S LS  + L+ + LS N L+G+IP 
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 9   SLTGQITPKIGQ--LKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG- 65
           + +G I P + Q    +L  L L  N F G I  +LS  S L  + LS+N LSG IPS  
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438

Query: 66  TQLQSFNALTYAGNELCGLPLPN 88
             L     L    N L G  +P 
Sbjct: 439 GSLSKLRDLKLWLNMLEG-EIPQ 460

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.7 bits (161), Expect = 3e-13
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 9   SLTGQITPKI-GQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIP--SG 65
             TG+I   + G   +L  LDLS N F+G +       S L  + LS NN SG++P  + 
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339

Query: 66  TQLQSFNALTYAGNELCGLPLPN 88
            +++    L  + NE  G  LP 
Sbjct: 340 LKMRGLKVLDLSFNEFSG-ELPE 361

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 6e-13
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 3   LACVHFSLT-GQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGK 61
           L+    ++    ++  +  L  L+ L LS +   G +S      + L+ +DLS N+LSG 
Sbjct: 57  LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGP 115

Query: 62  IPSGTQLQSFNALTY 76
           + + T L S + L +
Sbjct: 116 VTTLTSLGSCSGLKF 130

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 6e-13
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 3   LACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKI 62
            A       G  + ++ +L + +  +++   + G  S +      +  +D+SYN LSG I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 63  PSG-TQLQSFNAL 74
           P     +     L
Sbjct: 649 PKEIGSMPYLFIL 661

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 9   SLTGQITPKI---GQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG 65
           S++G              L  L +S N+  G +   +SR   L  +D+S NN S  IP  
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFL 219

Query: 66  TQLQSFNALTYAGNELCGLPLP 87
               +   L  +GN+L G    
Sbjct: 220 GDCSALQHLDISGNKLSG-DFS 240

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 9   SLTGQITPK-IGQLKSLDFLDLSRNQFFGGISSSLSRLS-RLSVMDLSYNNLSGKIPSGT 66
           + +G++    + +++ L  LDLS N+F G +  SL+ LS  L  +DLS NN SG I    
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388

Query: 67  QLQSFNALTY---AGNELCG 83
                N L       N   G
Sbjct: 389 CQNPKNTLQELYLQNNGFTG 408

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 4e-11
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 9   SLTGQITPK--IGQLKSLDFLDLSRNQFFGGIS-SSLSRLSRLSVMDLSYNNLSGKIPSG 65
           SL+G +T    +G    L FL++S N        S   +L+ L V+DLS N++SG    G
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 66  -TQLQSFNALTY---AGNELCG-LPLPN 88
                    L +   +GN++ G + +  
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVDVSR 198

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLS-RLSRLSVMDLSYNNLSGKIPSG-T 66
              G I P    LKSL +L L+ N+F G I   LS     L+ +DLS N+  G +P    
Sbjct: 258 QFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315

Query: 67  QLQSFNALTYAGNELCG 83
                 +L  + N   G
Sbjct: 316 SCSLLESLALSSNNFSG 332

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS 64
           S +G I  ++G  +SL +LDL+ N F G I +++ + S      ++ N ++GK   
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYV 576

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 1   MWLACVHFSLTGQITPKIGQLKSLDFLDLSRN--QFFGGISSSLSRLSRLSVMDLSYNNL 58
                    + G+    I           + N  +F G  S  L+RLS  +  +++    
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620

Query: 59  SGKIP-SGTQLQSFNALTYAGNELCG 83
            G    +     S   L  + N L G
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSG 646

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 18/65 (27%), Positives = 31/65 (47%)

Query: 19  GQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAG 78
            ++ S+D      N  F  +SSSL  L+ L  + LS ++++G +       S  +L  + 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 79  NELCG 83
           N L G
Sbjct: 110 NSLSG 114

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 98.0 bits (245), Expect = 3e-25
 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 2/81 (2%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
           SL   +  K+G  K+L+ LDL  N+ +G +   L++L  L  +++S+NNL G+IP G  L
Sbjct: 232 SLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290

Query: 69  QSFNALTYAGNE-LCGLPLPN 88
           Q F+   YA N+ LCG PLP 
Sbjct: 291 QRFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 74.5 bits (184), Expect = 1e-16
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQ 67
           +L G I P I +L  L +L ++     G I   LS++  L  +D SYN LSG +P   + 
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147

Query: 68  LQSFNALTYAGNELCG 83
           L +   +T+ GN + G
Sbjct: 148 LPNLVGITFDGNRISG 163

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 70.3 bits (173), Expect = 5e-15
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
            LTG+I P    L +L F+DLSRN   G  S           + L+ N+L+  +      
Sbjct: 185 RLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243

Query: 69  QSFNALTYAGNELCG 83
           ++ N L    N + G
Sbjct: 244 KNLNGLDLRNNRIYG 258

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 67.6 bits (166), Expect = 4e-14
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 3   LACVHFSLTGQITPKIGQLKSLDFLDLS-RNQFFGGISSSLSRLSRLSVMDLSYNNLSGK 61
           L+ ++      I   +  L  L+FL +   N   G I  ++++L++L  + +++ N+SG 
Sbjct: 57  LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116

Query: 62  IPSG----TQLQ----SFNALT 75
           IP        L     S+NAL+
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALS 138

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.8 bits (164), Expect = 9e-14
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLS-VMDLSYNNLSGKIPSGTQ 67
           +L+G + P I  L +L  +    N+  G I  S    S+L   M +S N L+GKIP    
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195

Query: 68  LQSFNALTYAGNELCG 83
             +   +  + N L G
Sbjct: 196 NLNLAFVDLSRNMLEG 211

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 5   CVHFSLTGQITPKIGQLKSLDFLDLSRNQFFG--GISSSLSRLSRLSVMDLS-YNNLSGK 61
           C + +  G +     Q   ++ LDLS         I SSL+ L  L+ + +   NNL G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 62  IPSG-TQLQSFNALTYAGNELCG 83
           IP    +L   + L      + G
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSG 115

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 6/93 (6%)

Query: 7   HFSLTGQITPKIGQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNLSGKI 62
            F  +G++   IGQL  L+ L L  +             +S             +     
Sbjct: 90  GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF 149

Query: 63  PSGTQLQSFNALTYAGNELCGLPLPNKCPTEES 95
                 + F+ L    + +   P          
Sbjct: 150 VDYDPREDFSDLIK--DCINSDPQQKSIKKSSR 180

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 12  GQITPKIGQLKSLDFLDLSRNQFFGG-ISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQS 70
            Q        + +  + +  N      + +SL ++ +L +++  YN L GK+P+      
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK 354

Query: 71  FNALTYAGNELCGLP 85
             +L  A N++  +P
Sbjct: 355 LASLNLAYNQITEIP 369

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 10/85 (11%), Positives = 26/85 (30%), Gaps = 8/85 (9%)

Query: 13  QITPKIGQLKSL------DFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT 66
           +   +     +L      +  D   N+        ++    L+ + +  N++   +    
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI 585

Query: 67  QLQSFNALTYAGNELCGLPLPNKCP 91
              + + L    N    + L   CP
Sbjct: 586 -TPNISVLDIKDNPNISIDLSYVCP 609

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 10/80 (12%)

Query: 11  TGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG----- 65
           T  +   + ++K L  L+   NQ   G   +     +L+ ++L+YN ++  IP+      
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYNQITE-IPANFCGFT 376

Query: 66  TQLQSFNALTYAGNELCGLP 85
            Q+++ +    A N+L  +P
Sbjct: 377 EQVENLSF---AHNKLKYIP 393

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
            L G++ P  G    L  L+L+ NQ     ++      ++  +  ++N L   IP+    
Sbjct: 341 QLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDA 398

Query: 69  QSFNALTY---AGNELCGLP 85
           +S + ++    + NE+  + 
Sbjct: 399 KSVSVMSAIDFSYNEIGSVD 418

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 9e-09
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 18  IGQLKSLDFLDLSRNQF-------FGGISSSLSRLSRLSVMDLSYNNLSGKIPS----GT 66
              +  +  +D S N+        F  +  +  +   +S ++LS N +S         G+
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 67  QLQSFNALTYAGNELCGLP 85
            L S N     GN L  +P
Sbjct: 458 PLSSINL---MGNMLTEIP 473

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 11/89 (12%), Positives = 23/89 (25%), Gaps = 9/89 (10%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSG---KIPSG 65
                   K   LK L  +++        + + L  L  + +++++ N            
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295

Query: 66  TQLQSFNALTY------AGNELCGLPLPN 88
             L                N L   P+  
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVET 324

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 11/87 (12%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQF-------FGGISSSLSRLSRLSVMDLSYNNLSGK 61
            ++            L  ++L  N             + +      L+ +DL +N L+  
Sbjct: 444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK- 502

Query: 62  IPSGTQLQSFNALTY---AGNELCGLP 85
           +    +  +   L     + N     P
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSKFP 529

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 10/83 (12%)

Query: 12  GQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT----- 66
             + P   +  ++  ++LS NQ         S  S LS ++L  N L+  IP  +     
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDEN 481

Query: 67  ----QLQSFNALTYAGNELCGLP 85
                     ++    N+L  L 
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLS 504

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 12/120 (10%), Positives = 32/120 (26%), Gaps = 21/120 (17%)

Query: 2   WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQF-------------------FGGISSSL 42
            +  +  ++T  ++  + +L  L    +  + F                   +       
Sbjct: 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245

Query: 43  SRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNELCGLPLPNKCPTEESAPGPGK 101
             L  L+ +++       K+P+    L     +  A N               +    G+
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 6/56 (10%), Positives = 15/56 (26%), Gaps = 1/56 (1%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS 64
                I            +    N     +S ++ RL++L    +  +    +   
Sbjct: 170 PQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENIC 224

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 10/79 (12%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSG--------KIPSGTQLQ 69
           +     +  L L      G +  ++ +L+ L V+ L  +             I +    +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 70  SFNA--LTYAGNELCGLPL 86
                 + Y    +   P 
Sbjct: 137 QKQKMRMHYQKTFVDYDPR 155

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 18  IGQLKSLDFLDLSRNQFFGGI--SSSLSRLSRLSVMDLSYNNLSGKI--------PSGTQ 67
            G  + ++ L  + N+    I        +S +S +D SYN +            P+  +
Sbjct: 373 CGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 68  LQSFNALTYAGNELCGLP 85
             + +++  + N++   P
Sbjct: 432 GINVSSINLSNNQISKFP 449

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 1/49 (2%)

Query: 21  LKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQ 69
             ++  LD+  N       S +       +  L Y+     I     L 
Sbjct: 586 TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRGCDALD 633

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 12  GQITPKIGQLKSLDFLDLSRNQFFG-GISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQS 70
            ++         +    +  N       S+SL ++ +L ++D  +N +   + +      
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVK 596

Query: 71  FNALTYAGNELCGLP 85
              L    N++  +P
Sbjct: 597 LTDLKLDYNQIEEIP 611

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 11/86 (12%)

Query: 10  LTGQITPKIGQLKSLDFLDLSRNQF-------FGGISSSLSRLSRLSVMDLSYNNLSGKI 62
           +    T        +  + LS N               +      L+ +DL +N L+  +
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-L 743

Query: 63  PSGTQLQSFNALTY---AGNELCGLP 85
               +  +   L+    + N     P
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFSSFP 769

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 10/84 (11%), Positives = 24/84 (28%), Gaps = 8/84 (9%)

Query: 14  ITPKIGQLKSLDFLDLSR------NQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQ 67
              +      L    +        N+      + ++    L  + +  N++  K+     
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL- 825

Query: 68  LQSFNALTYAGNELCGLPLPNKCP 91
                 L  A N    + + + CP
Sbjct: 826 TPQLYILDIADNPNISIDVTSVCP 849

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 7e-08
 Identities = 8/64 (12%), Positives = 16/64 (25%)

Query: 7   HFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT 66
           +             LK L  ++L        +   L  L  L  ++++ N          
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 67  QLQS 70
               
Sbjct: 536 DWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 16  PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALT 75
              G    L  L L  NQ         +   ++  +  S+N L   IP+    +S   + 
Sbjct: 589 EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMG 647

Query: 76  Y---AGNELCGLP 85
               + N++    
Sbjct: 648 SVDFSYNKIGSEG 660

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 7e-07
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 20/92 (21%)

Query: 14  ITPKIGQLKSLDFLDLSRNQF-------------------FGGISSSLSRLSRLSVMDLS 54
           I+  I +L  L  +  + + F                   +     S S L  L+ ++L 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 55  YNNLSGKIPSG-TQLQSFNALTYAGNELCGLP 85
                 ++P     L    +L  A N      
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 7/80 (8%), Positives = 23/80 (28%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
               Q    +     +  L L+     G +  ++ +L+ L V+    ++ +         
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 69  QSFNALTYAGNELCGLPLPN 88
           +    ++        +    
Sbjct: 370 ELTPDMSEERKHRIRMHYKK 389

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 7/81 (8%)

Query: 10  LTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNL-SGKIPSGTQL 68
           +  Q    I    SL  L +  N     +   L    +L ++D++ N   S  + S    
Sbjct: 794 ILRQWPTGITTCPSLIQLQIGSND-IRKVDEKL--TPQLYILDIADNPNISIDVTSVCPY 850

Query: 69  QSFNALTYAGN---ELCGLPL 86
                     +   ++ G   
Sbjct: 851 IEAGMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 11/81 (13%), Positives = 20/81 (24%), Gaps = 2/81 (2%)

Query: 7   HFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS-- 64
            F   G++   IGQL  L  L    +                 + +   + +        
Sbjct: 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF 391

Query: 65  GTQLQSFNALTYAGNELCGLP 85
               Q  N      + +   P
Sbjct: 392 LDYDQRLNLSDLLQDAINRNP 412

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 6/74 (8%)

Query: 18  IGQLKSLDFLDLSRNQFFG-----GISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSF 71
              +  +  +D S N+          S    +    S + LSYN +              
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 72  NALTYAGNELCGLP 85
           + +  + N +  +P
Sbjct: 700 STIILSNNLMTSIP 713

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 14  ITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLS--------GKIPSG 65
            +    +  +   + LS N+     +   +  S +S + LS N ++         K  + 
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724

Query: 66  TQLQSFNALTYAGNELCGLP 85
                   +    N+L  L 
Sbjct: 725 KNTYLLTTIDLRFNKLTSLS 744

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 16  PKIGQLKSLDFLDLSRNQF------FGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQ 69
           P++  +K    + L   Q          IS ++ RL++L ++  + +  +    +     
Sbjct: 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED 471

Query: 70  S 70
           +
Sbjct: 472 A 472

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 13  QITPKIGQ-LKSLDFLDLSRNQFFGGI--SSSLSRLSRLSVMDLSYNNLSGKIPSGT--- 66
           +I          ++ L  S N+    I    +   +  +  +D SYN +  +  + +   
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 67  ---QLQSFNALTYAGNELCGLP 85
              +  + + +T + NE+   P
Sbjct: 668 DDYKGINASTVTLSYNEIQKFP 689

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 7e-09
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS---- 64
            L          L SL  L++S N FF   +     L+ L V+D S N++          
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

Query: 65  -GTQLQSFN 72
             + L   N
Sbjct: 541 FPSSLAFLN 549

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 9   SLTGQITPKI-GQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQ 67
           S      P I  +L++L FLDLS+ Q      ++ + LS L V+++S+NN          
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF--P 513

Query: 68  LQSFNALTY---AGNELCGLP 85
            +  N+L     + N +    
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSK 534

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 7   HFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT 66
             S  G  +       SL +LDLS N     +SS+   L +L  +D  ++NL        
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 67  QLQSFNALTY---AGNELCGLP 85
              S   L Y   +        
Sbjct: 417 -FLSLRNLIYLDISHTHTRVAF 437

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 5/83 (6%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
            +          L  L  L L+ N        + S LS L  +     NL+        +
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF--PI 120

Query: 69  QSFNALTY---AGNELCGLPLPN 88
                L     A N +    LP 
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPE 143

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 8e-08
 Identities = 13/56 (23%), Positives = 19/56 (33%)

Query: 9  SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS 64
           L    +        L  LDLSR +       +   LS LS + L+ N +      
Sbjct: 39 PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGI-SSSLSRLSRLSVMDLSYNNLSGKIPSG-T 66
                       L SL+ L ++ N F         + L  L+ +DLS   L    P+   
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 67  QLQSFNALTYAGNELCGLP 85
            L S   L  + N    L 
Sbjct: 492 SLSSLQVLNMSHNNFFSLD 510

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 10  LTGQITPKI-GQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
           L       +   L++L +LD+S        +   + LS L V+ ++ N+           
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-F 466

Query: 69  QSFNALTY---AGNELCGLP 85
                LT+   +  +L  L 
Sbjct: 467 TELRNLTFLDLSQCQLEQLS 486

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 5  CVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS 64
          C+  +   +I   +    S   LDLS N      S S      L V+DLS   +      
Sbjct: 14 CMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 65 GTQLQSFNALTY---AGNELCGLP 85
              QS + L+     GN +  L 
Sbjct: 71 --AYQSLSHLSTLILTGNPIQSLA 92

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQ--FFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT 66
           S  G        L SL+FLDLSRN   F G  S S    + L  +DLS+N +     +  
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393

Query: 67  QLQSFNALTYAGNELCGLP 85
            L+    L +  + L  + 
Sbjct: 394 GLEQLEHLDFQHSNLKQMS 412

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 11  TGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVM----DLSYNNLSGKIPSGT 66
           + ++      L +L+ LDLS N+      + L  L ++ ++    DLS N ++   P   
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 67  QLQSFNALTYAGNEL 81
           +    + LT   N  
Sbjct: 198 KEIRLHKLTLRNNFD 212

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 4/82 (4%)

Query: 7   HFSLTGQITPKIGQLKSLDFLDLSRNQ---FFGGISSSLSRLSRLSVMDLSYNNLSGKIP 63
             +L       +  L +L   +        +   I    + L+ +S   L    +   + 
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VK 298

Query: 64  SGTQLQSFNALTYAGNELCGLP 85
             +    +  L     +    P
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFP 320

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 5/62 (8%)

Query: 9   SLTGQITPKIGQLKSLDF----LDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS 64
            +       +  L  +      LDLS N     I     +  RL  + L  N  S  +  
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 65  GT 66
             
Sbjct: 219 TC 220

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 8e-08
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 9   SLTGQITPK-IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQ 67
            +  ++T +    L+++  + LS N++     +S + +  L  + L    L     S + 
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 68  LQSFNALTY---AGNELCGLP 85
            Q    LT    + N +  + 
Sbjct: 476 FQPLRNLTILDLSNNNIANIN 496

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
           S+         + K+L  LDLS N        +  +L  L  + LS N +         +
Sbjct: 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167

Query: 69  QSFNALTY---AGNELCGLP 85
            + ++L     + N++    
Sbjct: 168 FANSSLKKLELSSNQIKEFS 187

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
           +  G     +  L  L  L+L  N F          L  L ++DL  NNL+    S    
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS--VF 580

Query: 69  QSFNALTY---AGNELCGLP 85
            +  +L       N +  + 
Sbjct: 581 NNQVSLKSLNLQKNLITSVE 600

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 21  LKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY---A 77
              L  L+L++N+     S + S L  L V+DL  N +  ++      +    +     +
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE-WRGLENIFEIYLS 438

Query: 78  GNELCGLP 85
            N+   L 
Sbjct: 439 YNKYLQLT 446

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGIS-SSLSRLSRLSVMDLSYNNLSGKIPSG-T 66
            ++   +     L  L+ LDL  N+    ++      L  +  + LSYN       +   
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451

Query: 67  QLQSFNALTYAGNELCGLP 85
            + S   L      L  + 
Sbjct: 452 LVPSLQRLMLRRVALKNVD 470

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFN-ALTY 76
           I    SL  L+LS NQ           + RL  + L+   L   +     L+  N ++  
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226

Query: 77  ---AGNELCGLP 85
              + ++L    
Sbjct: 227 LSLSNSQLSTTS 238

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 8/76 (10%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG--- 65
            L+           +L  L L  N      ++   +   L  +DLS+N LS         
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 66  -TQLQ----SFNALTY 76
              LQ    S N +  
Sbjct: 144 LENLQELLLSNNKIQA 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 21 LKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY---A 77
            ++  L+L+ NQ     +++ +R S+L+ +D+ +N +S   P     Q    L      
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE--LCQKLPMLKVLNLQ 81

Query: 78 GNELCGLP 85
           NEL  L 
Sbjct: 82 HNELSQLS 89

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 2   WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGK 61
             +    SL          LK L+ L++  N   G  S+  + L  L  + LS +  S +
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 62  IPSGTQLQS 70
             +     S
Sbjct: 369 TLTNETFVS 377

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 1/79 (1%)

Query: 20  QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG 78
           +  +L  LDLS N      + S + L +L    L YNN+          L +   L    
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 79  NELCGLPLPNKCPTEESAP 97
           +           P  +   
Sbjct: 306 SFTKQSISLASLPKIDDFS 324

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 9/86 (10%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQ--------FFGGISSSLSRLSRLSVMDLSYNNLSG 60
           ++       +  L+ L+ LDL  N           GG    L  LS L +++L  N    
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

Query: 61  KIP-SGTQLQSFNALTYAGNELCGLP 85
                   L     +    N L  LP
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLP 576

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 7/81 (8%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG--- 65
            L         +   L  LD+  N           +L  L V++L +N LS         
Sbjct: 36  QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 66  -TQLQSFNALTYAGNELCGLP 85
            T L   +      N +  + 
Sbjct: 96  CTNLTELHL---MSNSIQKIK 113

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLS--RLSRLSVMDLSYNNLSGKIPSG- 65
            L+        QL++L  L LS N+     S  L     S L  ++LS N +    P   
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 66  TQLQSFNALTYAGNELCGLPLPNKC 90
             +     L     +L        C
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLC 216

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
           +++        +L  L  L+L  N+       + +  + L+ + L  N++   I +    
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNP-F 117

Query: 69  QSFNALTY---AGNELCGLPLP 87
                L     + N L    L 
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 7/84 (8%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSR-LSRLSVMDLSYNNLSGKIPSGTQ 67
           +L            SL  L+L +N                L+ +D+ +N       S   
Sbjct: 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW 630

Query: 68  LQSFNALTY------AGNELCGLP 85
             ++   T+      + + LC  P
Sbjct: 631 FVNWINETHTNIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 14/92 (15%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGIS---------SSLSRLSRLSVMDLSYNNLS 59
           ++    +  +  L ++ +L+L R+     IS          S   L  L  +++  N++ 
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 60  GKIPSGTQLQSFNALTY---AGNELCGLPLPN 88
           G I S         L Y   + +      L N
Sbjct: 343 G-IKSNM-FTGLINLKYLSLSNSFTSLRTLTN 372

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 17/58 (29%), Positives = 24/58 (41%)

Query: 2   WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLS 59
            L  V              L++L  LDLS N         L  L +L ++DL +NNL+
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 13/80 (16%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLS---RLSRLSVMDLSYNNLSGKIPS- 64
            +          +  L  L L+  Q    ++  L      + +  + LS + LS    + 
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 65  -----GTQLQ----SFNALT 75
                 T L     S+N L 
Sbjct: 242 FLGLKWTNLTMLDLSYNNLN 261

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 13  QITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFN 72
           ++   +  L +L  L LS N+F      S S    L+ + +  N    ++ +G  L++  
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC-LENLE 350

Query: 73  ALTY---AGNELCGLPLPN 88
            L     + +++      N
Sbjct: 351 NLRELDLSHDDIETSDCCN 369

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGI-SSSLSRLSRLSVMDLSYNNLSGKIPSGTQ 67
                         SL  L +  N     + +  L  L  L  +DLS++++        Q
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 68  LQSFNALTY---AGNELCGLP 85
           L++ + L     + NE   L 
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLK 392

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 16/77 (20%), Positives = 27/77 (35%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
               Q T  +  L  L+ L LS          + + L  ++ +DLS+N L+         
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 69  QSFNALTYAGNELCGLP 85
                L  A N +  + 
Sbjct: 523 LKGIYLNLASNHISIIL 539

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFNALT 75
           +  L  L  L+LS N+     + +     +L ++DL++  L  K        L     L 
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 76  YAGNELCGLP 85
            + + L    
Sbjct: 432 LSHSLLDISS 441

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 1/78 (1%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSG-KIPSGTQ 67
            L       +   K+L  L   +          L     L  + L  N++S  K+P G  
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 68  LQSFNALTYAGNELCGLP 85
            +    L +  N +  L 
Sbjct: 152 TEKLKVLDFQNNAIHYLS 169

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVM--DLSYNNLSGKIPSGT 66
            ++    PK    + L  LD   N         +S L + + +  +L+ N+++G  P   
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199

Query: 67  QLQSFNALTYAGNELCGLPLPN 88
               F +L + G +   +    
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKG 221

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALT-- 75
           +   K+L+ L L  N              +L V+D   N +   +     + S    T  
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKED-MSSLQQATNL 182

Query: 76  ---YAGNELCGLP 85
                GN++ G+ 
Sbjct: 183 SLNLNGNDIAGIE 195

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 5/72 (6%)

Query: 19  GQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY-- 76
                LD L L+ N       ++LS    L  +      +S  I     L +   L    
Sbjct: 78  QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIP-LHNQKTLESLY 135

Query: 77  -AGNELCGLPLP 87
              N +  + LP
Sbjct: 136 LGSNHISSIKLP 147

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 21 LKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY---A 77
            S + L+ S N      +++ SRL  L+ +DL+   +   I   T  QS + L      
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDT-FQSQHRLDTLVLT 89

Query: 78 GNELCGLP 85
           N L  + 
Sbjct: 90 ANPLIFMA 97

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 9/62 (14%)

Query: 23  SLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG----TQLQ----SFNAL 74
           S++ ++L ++ FF   S++    S L  +DL+  +LS ++PSG    + L+    S N  
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313

Query: 75  TY 76
             
Sbjct: 314 EN 315

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 9   SLTGQITPK-IGQLKSLDFLDLSRNQ--FFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG 65
           +   ++    +  L++L  LDLS +        +  L  LS L  ++LSYN     + + 
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTE 394

Query: 66  TQLQSFNALTY---AGNELCGLPLPN 88
              +    L     A   L      +
Sbjct: 395 A-FKECPQLELLDLAFTRLKVKDAQS 419

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY- 76
             +L +L FLDL+R Q +     +     RL  + L+ N L   +     L    AL + 
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETA-LSGPKALKHL 110

Query: 77  --AGNELCGLP 85
                 +  + 
Sbjct: 111 FFIQTGISSID 121

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 6/82 (7%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGIS-SSLSRLSRLSVMDLSYNNLSGKIPSGTQ 67
                 T    +   L+ LDL+  +     + S    L  L V++LS++ L         
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQL- 444

Query: 68  LQSFNALTY---AGNELCGLPL 86
                AL +    GN      +
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNI 466

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 4e-06
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 13  QITPKIGQLKSLDFLDLSRNQFFGGISS--SLSRLSRLSVMDLSYNNLSGKIPSGTQLQS 70
            + P +  L+ L+ L  S N     + +   ++ L RL  + L  N L  +  +   L S
Sbjct: 477 ALPPALAALRCLEVLQASDNA----LENVDGVANLPRLQELLLCNNRLQ-QSAAIQPLVS 531

Query: 71  FNALTY---AGNELCGLP 85
              L      GN LC   
Sbjct: 532 CPRLVLLNLQGNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 16  PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALT 75
             + QL  +  LDLS N+    +  +L+ L  L V+  S N L   +     L     L 
Sbjct: 457 CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELL 514

Query: 76  YAGNELCGLP 85
              N L    
Sbjct: 515 LCNNRLQQSA 524

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 13  QIT--PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQS 70
           QI+    +  L  L+ L L+ NQ        +  L+ L+ + LS N+++  I     L  
Sbjct: 276 QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRPLASLSK 334

Query: 71  FNALTYAGNEL 81
            ++  +A   +
Sbjct: 335 MDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 12/75 (16%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 13  QIT--PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQS 70
            I+    +  L  +  L+L  N     +S  LS ++ L+ + ++ + +   +     L  
Sbjct: 121 NISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTPIANLTD 178

Query: 71  FNALTYAGNELCGLP 85
             +L+   N++  + 
Sbjct: 179 LYSLSLNYNQIEDIS 193

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 13  QIT--PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQS 70
           +IT    +  L +L  L L+ +       S L+ L+++  ++L  N+    +   + +  
Sbjct: 99  KITDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSPLSNMTG 156

Query: 71  FNALTYAGNELCGLP 85
            N LT   +++  + 
Sbjct: 157 LNYLTVTESKVKDVT 171

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 13  QIT--PKIGQLKSLDFLDLSRNQFFGGIS--SSLSRLSRLSVMDLSYNNLSGKIPSG-TQ 67
           QI+    +  L  L  L++  NQ    IS  S L+ LS+L+ + L+ N L  +       
Sbjct: 254 QISDINAVKDLTKLKMLNVGSNQ----ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 68  LQSFNALTYAGNELCGLP 85
           L +   L  + N +  + 
Sbjct: 310 LTNLTTLFLSQNHITDIR 327

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.6 bits (96), Expect = 9e-05
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 13  QIT--PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQS 70
           ++     I  L +L++L+L+ NQ      S LS L +L+ + +  N ++  I +   L +
Sbjct: 55  KVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT-DISALQNLTN 111

Query: 71  FNALTYAGNELCGLP 85
              L    + +  + 
Sbjct: 112 LRELYLNEDNISDIS 126

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 9/77 (11%)

Query: 13  QIT--PKIGQLKSLDFLDLSRNQFFGGIS--SSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
           QI     +  L SL +     NQ    I+  + ++ ++RL+ + +  N ++  +     L
Sbjct: 188 QIEDISPLASLTSLHYFTAYVNQ----ITDITPVANMTRLNSLKIGNNKIT-DLSPLANL 242

Query: 69  QSFNALTYAGNELCGLP 85
                L    N++  + 
Sbjct: 243 SQLTWLEIGTNQISDIN 259

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 13  QITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFN 72
            + P+      + ++ L  N+    I  +L     L   DL  N            ++  
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 73  ALTYAGNELCGLPLPN 88
             T A   +  L   N
Sbjct: 264 VQTVAKQTVKKLTGQN 279

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 13  QIT--PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQS 70
            +     +  L +L  LDL+ N         L     +  +  + NN+S ++      Q 
Sbjct: 69  VLYETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR-GQG 121

Query: 71  FNALTYAGNELCGLP 85
              +  A N++  L 
Sbjct: 122 KKNIYLANNKITMLR 136

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 9/76 (11%)

Query: 18  IGQLKSLDFLDLSRNQFFG-GISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQ------- 69
            G    + +LDL  N+      +   +    L  ++L YN +   +              
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDL 198

Query: 70  SFNALTYAGNELCGLP 85
           S N L + G E     
Sbjct: 199 SSNKLAFMGPEFQSAA 214

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 13 QITPKIGQ-LKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSF 71
          Q    + Q   ++  LDLS N      ++ L+  ++L +++LS N L  +      L + 
Sbjct: 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDLESLSTL 82

Query: 72 NALTYAGNELCGLP 85
            L    N +  L 
Sbjct: 83 RTLDLNNNYVQELL 96

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 5/79 (6%)

Query: 13  QIT--PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQ 69
            I           L  LDLS N+    +       + ++ + L  N L   I       Q
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 70  SFNALTYAGNELCGLPLPN 88
           +       GN      L +
Sbjct: 238 NLEHFDLRGNGFHCGTLRD 256

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 19  GQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY-- 76
            + +    + L+ N+            SR+  +DL  N +   +       S + L +  
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLN 175

Query: 77  -AGNELCGLP 85
              N +  + 
Sbjct: 176 LQYNFIYDVK 185

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 18 IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY- 76
                     ++ +     ++S       +  +DLS N LS +I +   L  F  L   
Sbjct: 6  KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAAD-LAPFTKLELL 63

Query: 77 --AGNELCGLP 85
            + N L    
Sbjct: 64 NLSSNVLYETL 74

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 15/78 (19%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISS--SLSRLSRLSVMDLSYNNLSGKIPSG----TQLQ-- 69
                +L+ L+L  N     I         ++L  +DLS N L+  +         +   
Sbjct: 165 AASSDTLEHLNLQYNF----IYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219

Query: 70  --SFNALTYAGNELCGLP 85
               N L      L    
Sbjct: 220 SLRNNKLVLIEKALRFSQ 237

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 9/68 (13%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-----TQLQ--- 69
              L+ L +LD+S              L+ L+ + ++ N+      S      T L    
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 70  -SFNALTY 76
            S   L  
Sbjct: 480 LSKCQLEQ 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 23  SLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNELC 82
           ++D   L+    F         L+ +S M L+  ++   +    +   + +L+    +L 
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLK 320

Query: 83  GLP 85
             P
Sbjct: 321 QFP 323

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFG-GISSSLSRLSRLSVMDLSYNNLSGKIPSGTQ 67
            L    +  IGQL +L  L+++ N      + +  S L+ L  +DLSYN +   I     
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVND- 172

Query: 68  LQSFNALTYAGNEL 81
           LQ           L
Sbjct: 173 LQFLRENPQVNLSL 186

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 9   SLTGQITPKI-GQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQ 67
           S        +     +L FLDLS+ Q           L RL ++++S+NNL   + S   
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSH- 516

Query: 68  LQSFNALTY---AGNELCGLP 85
                +L+    + N +    
Sbjct: 517 YNQLYSLSTLDCSFNRIETSK 537

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 9   SLTGQITPKIGQLKSLDFLDLSRNQFFGGI-SSSLSRLSRLSVMDLSYNNLSGKIPSGTQ 67
           +           L SL+ L ++ N F     S+  +  + L+ +DLS   L   I  G  
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGV- 492

Query: 68  LQSFNALTY---AGNELCGLP 85
             + + L     + N L  L 
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLD 513

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY- 76
              L SL+ L     +     S  + +L  L  +++++N +           +   L + 
Sbjct: 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHV 158

Query: 77  --AGNELCGLP 85
             + N +  + 
Sbjct: 159 DLSYNYIQTIT 169

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 5/73 (6%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY- 76
              L  L  L L+ N        S S L+ L  +      L+  + S   +     L   
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFP-IGQLITLKKL 133

Query: 77  --AGNELCGLPLP 87
             A N +    LP
Sbjct: 134 NVAHNFIHSCKLP 146

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS 64
              L  L  L++S N      SS  ++L  LS +D S+N +      
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 19  GQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY-- 76
                L +LDLSR +       +   L  LS + L+ N +      G+      +L    
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGS-FSGLTSLENLV 110

Query: 77  -AGNELCGLP 85
               +L  L 
Sbjct: 111 AVETKLASLE 120

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 23 SLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY---AGN 79
          S   +DLS N      S S S  S L  +DLS   +   I         + L+     GN
Sbjct: 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKA-WHGLHHLSNLILTGN 90

Query: 80 ELCGLP 85
           +    
Sbjct: 91 PIQSFS 96

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 12  GQITPKIGQLKSLDFLDLSRNQ--FFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQ 69
           G I+ K   L SL +LDLSRN   F G  S S    + L  +DLS+N       +   L+
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE 399

Query: 70  SFNALTYAGNELCGLP 85
               L +  + L  + 
Sbjct: 400 ELQHLDFQHSTLKRVT 415

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 14  ITPKIGQLKSLDFLDLSRNQFFGGIS-SSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFN 72
           ++     L+ L  LD   +        S+   L +L  +D+SY N               
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG--IFLGLT 448

Query: 73  ALTY---AGNELCGLPLPN 88
           +L     AGN      L N
Sbjct: 449 SLNTLKMAGNSFKDNTLSN 467

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 16  PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALT 75
             +  L +L  LDL+ N         L     +  +  + NN+S ++      Q    + 
Sbjct: 74  LDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR-GQGKKNIY 126

Query: 76  YAGNELCGLP 85
            A N++  L 
Sbjct: 127 LANNKITMLR 136

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 9e-06
 Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 13  QITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFN 72
            + P+      + ++ L  N+    I  +L     L   DL  N            ++  
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 73  ALTYAGNELCGLPLPN 88
             T A   +  L   N
Sbjct: 264 VQTVAKQTVKKLTGQN 279

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 9/76 (11%)

Query: 18  IGQLKSLDFLDLSRNQFFG-GISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQ------- 69
            G    + +LDL  N+      +   +    L  ++L YN +   +              
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDL 198

Query: 70  SFNALTYAGNELCGLP 85
           S N L + G E     
Sbjct: 199 SSNKLAFMGPEFQSAA 214

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 19  GQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY-- 76
            + +    + L+ N+            SR+  +DL  N +   +       S + L +  
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLN 175

Query: 77  -AGNELCGLP 85
              N +  + 
Sbjct: 176 LQYNFIYDVK 185

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 13 QITPKIGQ-LKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSF 71
          Q    + Q   ++  LDLS N      ++ L+  ++L +++LS N L         L + 
Sbjct: 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLDLESLSTL 82

Query: 72 NALTYAGNELCGLP 85
            L    N +  L 
Sbjct: 83 RTLDLNNNYVQELL 96

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 5/79 (6%)

Query: 13  QIT--PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQ 69
            I           L  LDLS N+    +       + ++ + L  N L   I       Q
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 70  SFNALTYAGNELCGLPLPN 88
           +       GN      L +
Sbjct: 238 NLEHFDLRGNGFHCGTLRD 256

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 5/71 (7%)

Query: 18 IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY- 76
                     ++ +     ++S       +  +DLS N LS  I +   L  F  L   
Sbjct: 6  KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAAD-LAPFTKLELL 63

Query: 77 --AGNELCGLP 85
            + N L    
Sbjct: 64 NLSSNVLYETL 74

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 16  PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNAL 74
           P  G    L  L L        +   + RL++L  +DL       ++PS   QL +   +
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 75  TYAGNELCGLP 85
               +    L 
Sbjct: 307 LVPPHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 5/59 (8%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG----TQLQSFN 72
           I  L++L  L +  +     +  ++  L +L  +DL         P        L+   
Sbjct: 202 IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 11/80 (13%)

Query: 16  PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIP----------SG 65
             + Q   L+ L L+RN     + +S++ L+RL  + +       ++P            
Sbjct: 121 DTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 66  TQLQSFNALTYAGNELCGLP 85
             L +  +L      +  LP
Sbjct: 180 QGLVNLQSLRLEWTGIRSLP 199

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 11/80 (13%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG----TQLQ---- 69
             +L  L  + +        +  ++ + + L  + L+ N L   +P+      +L+    
Sbjct: 100 AFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157

Query: 70  -SFNALTYAGNELCGLPLPN 88
            +   LT     L       
Sbjct: 158 RACPELTELPEPLASTDASG 177

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 4/61 (6%)

Query: 16  PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG----TQLQSF 71
           P I  L  L+ LDL                + L  + L   +    +P      TQL+  
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

Query: 72  N 72
           +
Sbjct: 283 D 283

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 20  QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY--- 76
            L++L +LD+S        +   + LS L V+ ++ N+                LT+   
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDL 477

Query: 77  AGNELCGLP 85
           +  +L  L 
Sbjct: 478 SQCQLEQLS 486

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 18  IGQLKSLDFLDLSRNQF-FGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY 76
           IG LK+L  L+++ N      +    S L+ L  +DLS N +   I     L+  + +  
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD-LRVLHQMPL 177

Query: 77  AGNEL 81
               L
Sbjct: 178 LNLSL 182

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 23 SLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY---AGN 79
          S   LDLS N      S S      L V+DLS   +   I  G   QS + L+     GN
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGA-YQSLSHLSTLILTGN 86

Query: 80 ELCGLP 85
           +  L 
Sbjct: 87 PIQSLA 92

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY- 76
                SL +LDLS N     +SS+   L +L  +D  ++NL  ++   +   S   L Y 
Sbjct: 369 DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYL 426

Query: 77  --AGNELCGLP 85
             +        
Sbjct: 427 DISHTHTRVAF 437

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT--QLQSFNALT 75
              L  L  L L+ N        + S LS L  +     NL+  + +     L++   L 
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELN 130

Query: 76  YAGNELCGLPLPN 88
            A N +    LP 
Sbjct: 131 VAHNLIQSFKLPE 143

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.4 bits (97), Expect = 5e-05
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 19  GQLKSLDFLDLSRNQF---FGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALT 75
            +  +L  L L         G  S+  +   +L  +DLS+N+L             + L 
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-AAGAPSCDWPSQLN 256

Query: 76  Y---AGNELCGLP 85
               +   L  +P
Sbjct: 257 SLNLSFTGLKQVP 269

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 5/70 (7%)

Query: 21  LKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT-----QLQSFNALT 75
              L  L +++          +     LS +DLS N   G+    +     +  +   L 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 76  YAGNELCGLP 85
                +    
Sbjct: 208 LRNAGMETPS 217

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 21  LKSLDFLDLSRNQF---FGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYA 77
              L+ L+LS         G+ + LS L      DLSYN L    PS  +L     L+  
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGLPAKLSVL------DLSYNRLDR-NPSPDELPQVGNLSLK 304

Query: 78  GNEL 81
           GN  
Sbjct: 305 GNPF 308

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 21  LKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT--QLQSFNALTYAG 78
           L +L  L+LS N      SS+   L +++ +DL  N+++  I   T   L+    L    
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRD 371

Query: 79  NELCGLPLPNKCPT 92
           N L  +      P 
Sbjct: 372 NALTTIHFIPSIPD 385

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 1/68 (1%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYA 77
              L  L  L L+ N          S L+ L  + L+ N L+  +       +   L  +
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDIS 534

Query: 78  GNELCGLP 85
            N+L    
Sbjct: 535 RNQLLAPN 542

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 21 LKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY---A 77
          L + + L LS N      +SS   L +L +++L        I      ++   L      
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLG 81

Query: 78 GNELCGLP 85
           +++  L 
Sbjct: 82 SSKIYFLH 89

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 21  LKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY---A 77
           L +L  LDL  ++ +     +   L  L  + L +  LS  +      ++  ALT    +
Sbjct: 72  LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 78  GNELCGLPLP 87
            N++  L L 
Sbjct: 132 KNQIRSLYLH 141

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 16  PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALT 75
           P++     L  +D+  N     +         L  +    N L  ++P    L    A+ 
Sbjct: 147 PELQNSSFLKIIDVDNNS----LKKLPDLPPSLEFIAAGNNQLE-ELPELQNLPFLTAIY 201

Query: 76  YAGNELCGLP 85
              N L  LP
Sbjct: 202 ADNNSLKKLP 211

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 5/70 (7%)

Query: 16  PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALT 75
           P++  L  L  +    N     +      L  +       N L  ++P    L     + 
Sbjct: 189 PELQNLPFLTAIYADNNS-LKKLPDLPLSLESI---VAGNNILE-ELPELQNLPFLTTIY 243

Query: 76  YAGNELCGLP 85
              N L  LP
Sbjct: 244 ADNNLLKTLP 253

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYA 77
           +  L  L  L    N+      SSL+ L+ ++ +   +N +S  +     L     L   
Sbjct: 327 VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD-LTPLANLTRITQLGLN 383

Query: 78  GNELCGLPL 86
                  P+
Sbjct: 384 DQAWTNAPV 392

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 9/77 (11%)

Query: 13  QIT--PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG--TQL 68
           QI+    +  L +L  L+L+ NQ      S +S L  L+ + L +NN+S   P    T+L
Sbjct: 276 QISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKL 333

Query: 69  QSFNALTYAGNELCGLP 85
           Q         N++  + 
Sbjct: 334 QRLFF---YNNKVSDVS 347

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 9/77 (11%)

Query: 13  QIT--PKIGQLKSLDFLDLSRNQFFGGIS--SSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
           QI+    +G L +LD L L+ NQ    +    +L+ L+ L+ +DL+ N +S  +   + L
Sbjct: 210 QISDITPLGILTNLDELSLNGNQ----LKDIGTLASLTNLTDLDLANNQISN-LAPLSGL 264

Query: 69  QSFNALTYAGNELCGLP 85
                L    N++  + 
Sbjct: 265 TKLTELKLGANQISNIS 281

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 13  QIT--PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQS 70
           +++    + +L +L+ L  + NQ      + L  L+ L  + L+ N L   I +   L +
Sbjct: 188 KVSDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLK-DIGTLASLTN 244

Query: 71  FNALTYAGNELCGLP 85
              L  A N++  L 
Sbjct: 245 LTDLDLANNQISNLA 259

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 13  QIT--PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQS 70
           Q+     +  L +L  LDL+ NQ      + LS L++L+ + L  N +S  I     L +
Sbjct: 232 QLKDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQIS-NISPLAGLTA 288

Query: 71  FNALTYAGNELCGLP 85
              L    N+L  + 
Sbjct: 289 LTNLELNENQLEDIS 303

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 13  QIT--PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQS 70
           Q+T    +  L  L  + ++ NQ      + L+ L+ L+ + L  N ++  I     L +
Sbjct: 79  QLTDITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD-IDPLKNLTN 135

Query: 71  FNALTYAGNELCGLP 85
            N L  + N +  + 
Sbjct: 136 LNRLELSSNTISDIS 150

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.0 bits (89), Expect = 9e-04
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 18  IGQLKSLDFLDLSRNQFFGGIS--SSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFN 72
           +  L +L  ++ S NQ    ++  + L  L++L  + ++ N ++   P    T L    
Sbjct: 64  VEYLNNLTQINFSNNQ----LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 118

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 10/68 (14%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYA 77
              L  L             + +  S L +L    +  N L+        LQ    L+ +
Sbjct: 100 PPGLLELSIFSNPLTH----LPALPSGLCKL---WIFGNQLTSLPVLPPGLQE---LSVS 149

Query: 78  GNELCGLP 85
            N+L  LP
Sbjct: 150 DNQLASLP 157

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 6/83 (7%)

Query: 3   LACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKI 62
           L     +LT  +     +L++L+   +S NQ    +      L  LS+      +L    
Sbjct: 66  LVIPDNNLT-SLPALPPELRTLE---VSGNQL-TSLPVLPPGLLELSIFSNPLTHLPALP 120

Query: 63  PSGTQLQ-SFNALTYAGNELCGL 84
               +L    N LT       GL
Sbjct: 121 SGLCKLWIFGNQLTSLPVLPPGL 143

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 20  QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT--QLQSFNALTYA 77
           +  ++  L + +   F  +S+  S L ++  + +  + +   +P      L+S   L  +
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342

Query: 78  GNELCGLPLPN 88
            N +    L N
Sbjct: 343 ENLMVEEYLKN 353

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 18  IGQLKSLDFLDLSRNQFFG-GISSSLSRLSRLSVMDLSYNNLSGKIPSGT--QLQSFNAL 74
            G L SL +L+L  N +   G++S    L+ L  + +       +I       L S N L
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

Query: 75  TYAGNELCGLP 85
                 L    
Sbjct: 154 EIKALSLRNYQ 164

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 20  QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN 79
            LK+L  LD+SRN F   +  S     ++  ++LS   +   + +    Q+   L  + N
Sbjct: 385 TLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI-PQTLEVLDVSNN 441

Query: 80  ELCGLPL 86
            L    L
Sbjct: 442 NLDSFSL 448

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 12  GQITPKIGQLKSLDFLDLSRNQFFGGISS--SLSRLSRLSVMDLSYNNLSGKIPS-GTQL 68
           G++     + + L+FL         G++S  +L +L++L  ++LS N +SG +     + 
Sbjct: 32  GKLEGLTDEFEELEFLSTINV----GLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87

Query: 69  QSFNALTYAGNELCGL 84
            +   L  +GN++  L
Sbjct: 88  PNLTHLNLSGNKIKDL 103

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 18/72 (25%), Positives = 32/72 (44%)

Query: 10  LTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQ 69
           +T    P +  L SL  LD+S +     I + ++ L +++ +DLSYN     I     L 
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP 159

Query: 70  SFNALTYAGNEL 81
              +L    + +
Sbjct: 160 ELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG----TQLQSFN 72
           I  L +L+ L +           +LS L+ L+++D+S++     I +      ++ S +
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 10  LTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLS 59
               I  KI  L  ++ +DLS N     I   L  L  L  +++ ++ + 
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH 172

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 13  QITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFN 72
            +      + +L  LDLS N     +  +  +  RL  + L +N++   +   T   +  
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV-TLKLST-HHTLK 348

Query: 73  ALTYAGNEL 81
            LT + N+ 
Sbjct: 349 NLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 19  GQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT-QLQSFNALTYA 77
            +++ L+ L +S N+    ++     +  L V+DLS+N+L   +     Q      L   
Sbjct: 275 VKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 332

Query: 78  GNELCGLPL 86
            N +  L L
Sbjct: 333 HNSIVTLKL 341

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 18  IGQLKSLDFLDLSRNQFFGGIS--SSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALT 75
           +  LK+L+ L +  N+    +     L  LS+L V+DL  N ++      T+L+  N + 
Sbjct: 124 LIHLKNLEILSIRNNK----LKSIVMLGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWID 178

Query: 76  YAGNELCGLPLPNK 89
             G +    P+  +
Sbjct: 179 LTGQKCVNEPVKYQ 192

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)

Query: 12  GQITPKIGQLKSLDFLDLSRNQFFGGISS--SLSRLSRLSVMDLSYNNLSGKIPS-GTQL 68
           G+I     +  +L+FL L       G+ S  +L +L +L  ++LS N + G +     +L
Sbjct: 39  GKIEGLTAEFVNLEFLSLINV----GLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKL 94

Query: 69  QSFNALTYAGNELCGL 84
            +   L  +GN+L  +
Sbjct: 95  PNLTHLNLSGNKLKDI 110

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 13  QITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFN 72
            +      + +L  LDLS N     +  +  +  RL  + L +N++   +   T   +  
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV-TLKLST-HHTLK 342

Query: 73  ALTYAGNEL 81
            LT + N+ 
Sbjct: 343 NLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 19  GQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGT-QLQSFNALTYA 77
            +++ L+ L +S N+    ++     +  L V+DLS+N+L   +     Q      L   
Sbjct: 269 VKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 326

Query: 78  GNELCGLPL 86
            N +  L L
Sbjct: 327 HNSIVTLKL 335

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 10/69 (14%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 18  IGQLKSLDFLDLSRNQFFGGISS-SLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY 76
           + Q   L +L L+  +    ++   +S  ++L  +     ++     S  ++ + N    
Sbjct: 314 LSQNPKLVYLYLNNTE----LTELDVSHNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFE 368

Query: 77  AGNELCGLP 85
           A  +   +P
Sbjct: 369 AEGQTITMP 377

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 13  QIT--PKIGQLKSLDFLDLSRNQFFGGIS--SSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
           QIT    +  L +L +L +   Q    +S  + L+ LS+L+ +    N +S  I     L
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQ----VSDLTPLANLSKLTTLKADDNKIS-DISPLASL 194

Query: 69  QSFNALTYAGNELCGLP 85
            +   +    N++  + 
Sbjct: 195 PNLIEVHLKNNQISDVS 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 21  LKSLDFLDLSRNQFFGGISS-SLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTY--- 76
           L SL+ L ++ N F         + L  L+ +DLS   L  ++       S ++L     
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA-FNSLSSLQVLNM 206

Query: 77  AGNELCGLP 85
           + N    L 
Sbjct: 207 SHNNFFSLD 215

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 13  QIT--PKIGQLKSLDFLDLSRNQFFGGIS--SSLSRLSRLSVMDLSYNNLSGKIPSGTQL 68
            I+    +  L  L+ L L  N+    I+  + LSRL++L  + L  N +S  I     L
Sbjct: 120 GISDINGLVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQIS-DIVPLAGL 174

Query: 69  QSFNALTYAGNEL 81
                L  + N +
Sbjct: 175 TKLQNLYLSKNHI 187

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.69
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.4
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.39
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.36
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.36
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.36
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.34
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.33
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.32
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.31
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.31
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.3
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.3
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.29
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.27
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.27
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.26
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.25
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.25
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.25
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.25
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.24
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.23
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.22
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.22
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.2
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.2
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.17
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.1
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.1
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.1
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.1
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.04
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.04
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.03
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.02
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.02
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.02
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.01
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.01
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.01
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.99
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.99
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.99
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.98
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.98
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.96
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.92
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.88
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.87
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.86
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.85
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.84
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.79
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.78
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.76
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.76
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.73
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.73
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.71
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.71
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.69
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.66
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.65
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.64
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.61
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.56
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.55
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.52
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.5
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.46
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.36
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.3
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.91
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.81
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.62
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.54
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.54
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.42
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.34
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.94
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.79
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.66
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.56
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.47
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.13
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	93.99
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.48
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.34
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.62
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	91.17
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	90.63
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	90.63
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	86.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	82.13

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.69  E-value=1.5e-17  Score=145.57  Aligned_cols=93  Identities=40%  Similarity=0.713  Sum_probs=77.1

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc-
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN-   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N-   79 (175)
                      +.|+|++|.++|.||++++++++|+.|||++|+++|.+|..+..+++|++||+++|+++|.+|...++.++....+.|| 
T Consensus       659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~  738 (768)
T 3rgz_A          659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP  738 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCT
T ss_pred             CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCc
Confidence            4688888888888888888888888888888888888888888888888888888888888888888888888888888 


Q ss_pred             cCCCCCCCCCCCCCC
Q 039964           80 ELCGLPLPNKCPTEE   94 (175)
Q Consensus        80 ~l~~~p~~~~c~~~~   94 (175)
                      .|||.|.. .|....
T Consensus       739 ~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          739 GLCGYPLP-RCDPSN  752 (768)
T ss_dssp             EEESTTSC-CCCSCC
T ss_pred             hhcCCCCc-CCCCCc
Confidence            78988876 786544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.56  E-value=3e-15  Score=131.05  Aligned_cols=85  Identities=32%  Similarity=0.520  Sum_probs=80.7

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|||++|+++|.+|.+++++++|+.|||++|.++|.+|..++++++|+.|||++|+++|.+|.. ..+++|+.+++++|
T Consensus       635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred             cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence            47999999999999999999999999999999999999999999999999999999999999987 77889999999999


Q ss_pred             cCCCCC
Q 039964           80 ELCGLP   85 (175)
Q Consensus        80 ~l~~~p   85 (175)
                      .+.|..
T Consensus       715 ~l~g~i  720 (768)
T 3rgz_A          715 NLSGPI  720 (768)
T ss_dssp             EEEEEC
T ss_pred             cccccC
Confidence            988753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.45  E-value=1.5e-13  Score=101.25  Aligned_cols=85  Identities=20%  Similarity=0.178  Sum_probs=66.4

Q ss_pred             CEEEeecCccccCCCh-hhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITP-KIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~-~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~   78 (175)
                      ++|+|++|.+++..+. .+..+++|+.|+|++|.+++..|..+..+++|++|+|++|++++..|.. ..+++|+.+++++
T Consensus        32 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  111 (192)
T 1w8a_A           32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence            4688888888765543 3788888888888888888777888888888888888888888777764 5677888888888


Q ss_pred             ccCCCCC
Q 039964           79 NELCGLP   85 (175)
Q Consensus        79 N~l~~~p   85 (175)
                      |.+.+.+
T Consensus       112 N~l~~~~  118 (192)
T 1w8a_A          112 NQISCVM  118 (192)
T ss_dssp             SCCCEEC
T ss_pred             CcCCeeC
Confidence            8777653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=3.1e-13  Score=97.73  Aligned_cols=80  Identities=21%  Similarity=0.192  Sum_probs=50.9

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~   80 (175)
                      +|+|++|.+++..|..|..+++|+.|||++|+|++..|..+..+++|++|+|++|++++..|.. ..+.+|+.+++++|.
T Consensus        34 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            5666666666655666666666666666666666444444566666666666666666655543 455666666666664


Q ss_pred             C
Q 039964           81 L   81 (175)
Q Consensus        81 l   81 (175)
                      +
T Consensus       114 ~  114 (170)
T 3g39_A          114 W  114 (170)
T ss_dssp             B
T ss_pred             C
Confidence            4

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.44  E-value=6e-14  Score=110.68  Aligned_cols=87  Identities=39%  Similarity=0.694  Sum_probs=61.0

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc-c
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN-E   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N-~   80 (175)
                      +|+|++|.+++.+|. +..+++|+.|||++|.++|.+|..+..+++|+.|++++|+++|.+|....++++..+++.+| .
T Consensus       225 ~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          225 KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             EEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred             EEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence            456666666654444 56666777777777777777777777777777777777777777777766777777777777 5


Q ss_pred             CCCCCCCCCC
Q 039964           81 LCGLPLPNKC   90 (175)
Q Consensus        81 l~~~p~~~~c   90 (175)
                      +||.|.. .|
T Consensus       304 lc~~p~~-~C  312 (313)
T 1ogq_A          304 LCGSPLP-AC  312 (313)
T ss_dssp             EESTTSS-CC
T ss_pred             ccCCCCC-CC
Confidence            7776654 35

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=4.4e-13  Score=97.42  Aligned_cols=81  Identities=20%  Similarity=0.251  Sum_probs=45.9

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~   80 (175)
                      .+++++|.++ .+|..+.  ++|+.|+|++|.+++..|..+..+++|+.|+|++|++++.++.. ..+.+|+.+++++|.
T Consensus        16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            4556666654 5555443  55666666666666555555566666666666666666544433 445556666666665


Q ss_pred             CCCCC
Q 039964           81 LCGLP   85 (175)
Q Consensus        81 l~~~p   85 (175)
                      +.+.+
T Consensus        93 l~~l~   97 (174)
T 2r9u_A           93 LKSIP   97 (174)
T ss_dssp             CCCCC
T ss_pred             cceeC
Confidence            55443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.40  E-value=1.6e-13  Score=121.24  Aligned_cols=63  Identities=21%  Similarity=0.068  Sum_probs=37.2

Q ss_pred             EEEeecCccc-----cCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCC
Q 039964            2 WLACVHFSLT-----GQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS   64 (175)
Q Consensus         2 ~L~Ls~N~l~-----g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~   64 (175)
                      +|+|++|.++     +..|..+..+++|+.|||++|++++..|..+..+++|+.|+|++|++++.+|.
T Consensus       455 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~  522 (844)
T 3j0a_A          455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN  522 (844)
T ss_dssp             BCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCC
T ss_pred             cccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChh
Confidence            4566666665     33344455666666666666666655555566666666666666666654443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.39  E-value=1.5e-12  Score=96.00  Aligned_cols=85  Identities=27%  Similarity=0.338  Sum_probs=72.8

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.++ .+|..+..+++|+.|||++|.+++..|..+..+++|++|+|++|++++..|.. ..+++|+.+++++|
T Consensus        34 ~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  112 (193)
T 2wfh_A           34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN  112 (193)
T ss_dssp             CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence            47899999998 78888999999999999999999777778899999999999999999877764 67788999999999


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+.+.+.
T Consensus       113 ~l~~~~~  119 (193)
T 2wfh_A          113 DISVVPE  119 (193)
T ss_dssp             CCCBCCT
T ss_pred             CCCeeCh
Confidence            8876654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.36  E-value=2.3e-12  Score=96.77  Aligned_cols=82  Identities=17%  Similarity=0.099  Sum_probs=36.9

Q ss_pred             EEEeecCccccCCC-hhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            2 WLACVHFSLTGQIT-PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP-~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      +|+|++|.+++..| ..|..+++|+.|+|++|.+++..|..+..+++|++|+|++|++++..|.. ..+.+|+.+++++|
T Consensus        36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  115 (220)
T 2v70_A           36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN  115 (220)
T ss_dssp             EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred             EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence            34555555544322 22444444555555555544433334444444444444444444444332 33444444444444


Q ss_pred             cCCC
Q 039964           80 ELCG   83 (175)
Q Consensus        80 ~l~~   83 (175)
                      .+.+
T Consensus       116 ~l~~  119 (220)
T 2v70_A          116 RITC  119 (220)
T ss_dssp             CCCC
T ss_pred             cCCe
Confidence            4443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.36  E-value=1.9e-12  Score=97.31  Aligned_cols=85  Identities=13%  Similarity=0.079  Sum_probs=73.9

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..|..+++|+.|+|++|.+++..|..+..+++|++|+|++|++++..|.. ..+.+|+.+++++|
T Consensus        60 ~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  139 (220)
T 2v70_A           60 RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN  139 (220)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred             CEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence            47899999999777778999999999999999999777777899999999999999999887775 67788999999999


Q ss_pred             cCCCCC
Q 039964           80 ELCGLP   85 (175)
Q Consensus        80 ~l~~~p   85 (175)
                      .+.+.+
T Consensus       140 ~l~~~~  145 (220)
T 2v70_A          140 QITTVA  145 (220)
T ss_dssp             CCCCBC
T ss_pred             cCCEEC
Confidence            887764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.36  E-value=1.4e-12  Score=96.00  Aligned_cols=80  Identities=23%  Similarity=0.246  Sum_probs=46.2

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~   80 (175)
                      +|+|++|.+++..|..|..+++|+.|+|++|.+++..|..+..+++|++|+|++|++++.+|.. ..+++++.+++++|.
T Consensus        58 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             EEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             EEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            4556666666555555666666666666666666555555555666666666666666555544 445555556665554


Q ss_pred             C
Q 039964           81 L   81 (175)
Q Consensus        81 l   81 (175)
                      +
T Consensus       138 l  138 (192)
T 1w8a_A          138 F  138 (192)
T ss_dssp             B
T ss_pred             c
Confidence            4

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.35  E-value=3.4e-12  Score=95.86  Aligned_cols=83  Identities=20%  Similarity=0.119  Sum_probs=52.3

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~   80 (175)
                      .|+|++|.+++..+..|..+++|+.|+|++|.+++..|..+..+++|++|+|++|+++...+.. ..+.+|+.+++++|.
T Consensus        36 ~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~  115 (220)
T 2v9t_B           36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK  115 (220)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC
Confidence            5666666666544556666666666666666666555666666666666666666666444433 445666666666666


Q ss_pred             CCCC
Q 039964           81 LCGL   84 (175)
Q Consensus        81 l~~~   84 (175)
                      +.+.
T Consensus       116 l~~~  119 (220)
T 2v9t_B          116 INCL  119 (220)
T ss_dssp             CCCC
T ss_pred             CCEe
Confidence            5554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.34  E-value=2.6e-12  Score=102.15  Aligned_cols=82  Identities=22%  Similarity=0.139  Sum_probs=68.7

Q ss_pred             CEEEeec-CccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc
Q 039964            1 MWLACVH-FSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~-N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N   79 (175)
                      +.|+|++ |.|++..|..|..|++|+.|||++|+|+|..|..|.++++|+.|||++|+|++.+|.......|+.+++.+|
T Consensus        34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCC
Confidence            4789996 999977778899999999999999999988888899999999999999999977766533334888999998


Q ss_pred             cCC
Q 039964           80 ELC   82 (175)
Q Consensus        80 ~l~   82 (175)
                      .+.
T Consensus       114 ~~~  116 (347)
T 2ifg_A          114 PLH  116 (347)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.33  E-value=7.8e-12  Score=90.45  Aligned_cols=86  Identities=22%  Similarity=0.226  Sum_probs=69.7

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.++.. ..+.+++.+++++|
T Consensus        31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  110 (177)
T 2o6r_A           31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN  110 (177)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence            46889999988666666788899999999999998655556788999999999999998777764 66788899999998


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+.+.|.
T Consensus       111 ~l~~~~~  117 (177)
T 2o6r_A          111 QLKSVPD  117 (177)
T ss_dssp             CCSCCCT
T ss_pred             cceEeCH
Confidence            8876654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.32  E-value=4.4e-12  Score=93.51  Aligned_cols=81  Identities=17%  Similarity=0.167  Sum_probs=73.0

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..|..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+.. ..++++..+++++|
T Consensus        57 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            57999999999877788999999999999999999877788999999999999999999766654 67889999999999


Q ss_pred             cC
Q 039964           80 EL   81 (175)
Q Consensus        80 ~l   81 (175)
                      .+
T Consensus       137 ~~  138 (193)
T 2wfh_A          137 PL  138 (193)
T ss_dssp             CE
T ss_pred             Ce
Confidence            65

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.32  E-value=1.3e-12  Score=102.97  Aligned_cols=80  Identities=33%  Similarity=0.599  Sum_probs=36.8

Q ss_pred             EEEeec-CccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            2 WLACVH-FSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         2 ~L~Ls~-N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      +|+|++ |.+.+.+|..++++++|+.|+|++|.++|.+|..+..+++|++|++++|.+++.+|.. ..+++++.+++++|
T Consensus        80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  159 (313)
T 1ogq_A           80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence            344442 4444444444444444444444444444444444444444444444444444444433 33444444444444


Q ss_pred             cC
Q 039964           80 EL   81 (175)
Q Consensus        80 ~l   81 (175)
                      .+
T Consensus       160 ~l  161 (313)
T 1ogq_A          160 RI  161 (313)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.31  E-value=7.5e-12  Score=90.41  Aligned_cols=83  Identities=24%  Similarity=0.292  Sum_probs=74.2

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      +.|++++|.++ .+|..+.  ++|+.|+|++|.+++..|..+..+++|++|+|++|++++..|.. ..+++|+.+++++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            47899999998 6898775  89999999999999888889999999999999999999887765 67899999999999


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+.+.+.
T Consensus        89 ~l~~~~~   95 (170)
T 3g39_A           89 QLKSIPR   95 (170)
T ss_dssp             CCCCCCT
T ss_pred             ccCEeCH
Confidence            9887664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.31  E-value=8.3e-12  Score=90.60  Aligned_cols=82  Identities=18%  Similarity=0.139  Sum_probs=72.8

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCC-CcccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS-GTQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~-~~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..|..+++|+.|+|++|+|++..+..+..+++|++|+|++|++++.++. ...+++|+.+++++|
T Consensus        36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence            5799999999988899999999999999999999965555578999999999999999987776 367889999999999


Q ss_pred             cCC
Q 039964           80 ELC   82 (175)
Q Consensus        80 ~l~   82 (175)
                      .+.
T Consensus       116 ~~~  118 (174)
T 2r9u_A          116 PWD  118 (174)
T ss_dssp             CBC
T ss_pred             Ccc
Confidence            764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.31  E-value=8.9e-12  Score=94.05  Aligned_cols=86  Identities=24%  Similarity=0.185  Sum_probs=69.9

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+.. ..+.+|+.+++++|
T Consensus        43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N  122 (229)
T 3e6j_A           43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN  122 (229)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence            47899999999877888889999999999999997544455788899999999999998776664 56788888888888


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+...|.
T Consensus       123 ~l~~lp~  129 (229)
T 3e6j_A          123 KLTELPR  129 (229)
T ss_dssp             CCCSCCT
T ss_pred             cccccCc
Confidence            7776543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.30  E-value=9.8e-12  Score=89.91  Aligned_cols=83  Identities=17%  Similarity=0.132  Sum_probs=72.1

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|++|++++|++++.++.. ..+++++.+++++|
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            57999999999666666899999999999999999766667899999999999999999777665 56889999999999


Q ss_pred             cCCC
Q 039964           80 ELCG   83 (175)
Q Consensus        80 ~l~~   83 (175)
                      .+.+
T Consensus       135 ~~~~  138 (177)
T 2o6r_A          135 PWDC  138 (177)
T ss_dssp             CBCC
T ss_pred             Ceec
Confidence            7654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.30  E-value=4.8e-12  Score=107.63  Aligned_cols=79  Identities=28%  Similarity=0.317  Sum_probs=55.7

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL   81 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l   81 (175)
                      +|+|++|.+++ +|. ++.+++|+.|+|++|.|+ .+|..++.+++|+.|+|++|++++ +|....+++|+.+++++|.+
T Consensus       445 ~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l  520 (567)
T 1dce_A          445 VLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRL  520 (567)
T ss_dssp             EEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCC
T ss_pred             EEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCCC
Confidence            57777777774 665 777777777777777777 677777777777777777777776 45445666777777777766


Q ss_pred             CCC
Q 039964           82 CGL   84 (175)
Q Consensus        82 ~~~   84 (175)
                      .+.
T Consensus       521 ~~~  523 (567)
T 1dce_A          521 QQS  523 (567)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.29  E-value=1e-11  Score=93.20  Aligned_cols=86  Identities=19%  Similarity=0.147  Sum_probs=75.7

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..|..+++|+.|+|++|.++...+..+..+++|+.|+|++|++++..|.. ..+++|+.+++++|
T Consensus        59 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  138 (220)
T 2v9t_B           59 RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN  138 (220)
T ss_dssp             CEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence            57999999999888999999999999999999999544445788999999999999999988876 67889999999999


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+.+.+.
T Consensus       139 ~l~~~~~  145 (220)
T 2v9t_B          139 KLQTIAK  145 (220)
T ss_dssp             CCSCCCT
T ss_pred             cCCEECH
Confidence            9887654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.27  E-value=1.9e-11  Score=93.24  Aligned_cols=83  Identities=23%  Similarity=0.256  Sum_probs=43.9

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~   80 (175)
                      .|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|++|++++|++++..|.. ..+++|+.+++++|.
T Consensus        39 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  118 (251)
T 3m19_A           39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ  118 (251)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc
Confidence            4555555555555555555555555555555555544444555555555555555555444433 344445555555554


Q ss_pred             CCCC
Q 039964           81 LCGL   84 (175)
Q Consensus        81 l~~~   84 (175)
                      +.+.
T Consensus       119 l~~~  122 (251)
T 3m19_A          119 LKSL  122 (251)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            4433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.27  E-value=1.8e-11  Score=93.28  Aligned_cols=86  Identities=22%  Similarity=0.241  Sum_probs=68.5

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..+..+++|+.|+|++|.+++..+..+..+++|++|++++|++++..+.. ..+.+++.+++++|
T Consensus        62 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  141 (251)
T 3m19_A           62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN  141 (251)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence            47888888888777777888888888888888888666667788888888888888888766654 56778888888888


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+.+.+.
T Consensus       142 ~l~~~~~  148 (251)
T 3m19_A          142 QLQSIPA  148 (251)
T ss_dssp             CCCCCCT
T ss_pred             cCCccCH
Confidence            7776654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.26  E-value=2.8e-11  Score=89.59  Aligned_cols=86  Identities=24%  Similarity=0.256  Sum_probs=62.1

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+.. ..+++++.+++++|
T Consensus        31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  110 (208)
T 2o6s_A           31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN  110 (208)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence            46788888887555555777888888888888887544445677888888888888887666554 56677778888877


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+.+.+.
T Consensus       111 ~l~~~~~  117 (208)
T 2o6s_A          111 QLQSLPD  117 (208)
T ss_dssp             CCCCCCT
T ss_pred             cCcccCH
Confidence            7766543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.25  E-value=7e-12  Score=106.04  Aligned_cols=85  Identities=22%  Similarity=0.151  Sum_probs=59.8

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|||++|++++..|..|.++++|+.|||++|++++..|..|.++++|++|+|++|++++.+|.. ..+.+|+.+++++|
T Consensus        55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N  134 (635)
T 4g8a_A           55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  134 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred             CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence            46777788777655567777777777777777777555556777777777777777777655543 55667777777777


Q ss_pred             cCCCCC
Q 039964           80 ELCGLP   85 (175)
Q Consensus        80 ~l~~~p   85 (175)
                      .+.+.+
T Consensus       135 ~l~~l~  140 (635)
T 4g8a_A          135 NLASLE  140 (635)
T ss_dssp             CCCCST
T ss_pred             cCCCCC
Confidence            666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.25  E-value=2.6e-11  Score=91.43  Aligned_cols=85  Identities=26%  Similarity=0.286  Sum_probs=70.9

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..+..|..+++|+.|||++|.+++..+..+..+++|+.|++++|+++ .+|.. ..+.+|+.+++++|
T Consensus        67 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A           67 KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN  145 (229)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSS
T ss_pred             cEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCC
Confidence            47999999997544466789999999999999999666666789999999999999999 55554 77889999999999


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+.+.+.
T Consensus       146 ~l~~~~~  152 (229)
T 3e6j_A          146 QLKSIPH  152 (229)
T ss_dssp             CCCCCCT
T ss_pred             cCCccCH
Confidence            8887654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.25  E-value=1.6e-11  Score=87.91  Aligned_cols=82  Identities=24%  Similarity=0.347  Sum_probs=56.2

Q ss_pred             CEEEeecCccc-cCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964            1 MWLACVHFSLT-GQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~-g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~   78 (175)
                      ++|++++|.++ |.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|++++.+|.. ..+++++.+++++
T Consensus        27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  104 (168)
T 2ell_A           27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG  104 (168)
T ss_dssp             SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred             CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence            35777777776 66777777777777777777777643  55667777777777777777665554 3366677777777


Q ss_pred             ccCCCC
Q 039964           79 NELCGL   84 (175)
Q Consensus        79 N~l~~~   84 (175)
                      |.+.+.
T Consensus       105 N~l~~~  110 (168)
T 2ell_A          105 NKLKDI  110 (168)
T ss_dssp             SSCCSS
T ss_pred             CccCcc
Confidence            766654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.25  E-value=1.4e-11  Score=104.18  Aligned_cols=81  Identities=23%  Similarity=0.323  Sum_probs=59.8

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-ccc-CCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQL-QSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~-~~l~~l~~~~   78 (175)
                      ++|+|++|++++.+|..|..+++|+.|+|++|++++..|..+..+++|++|||++|++++.+|.. ..+ .+++.+++++
T Consensus       497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence            46777778777777777777778888888888877766777777777888888888887777765 333 5677777777


Q ss_pred             ccC
Q 039964           79 NEL   81 (175)
Q Consensus        79 N~l   81 (175)
                      |.+
T Consensus       577 Np~  579 (635)
T 4g8a_A          577 NDF  579 (635)
T ss_dssp             CCB
T ss_pred             CCC
Confidence            743

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.24  E-value=8.4e-12  Score=87.73  Aligned_cols=82  Identities=21%  Similarity=0.295  Sum_probs=68.8

Q ss_pred             CEEEeecCccc-cCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964            1 MWLACVHFSLT-GQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~-g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~   78 (175)
                      +.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|.. ..+++++.+++++
T Consensus        20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~   97 (149)
T 2je0_A           20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG   97 (149)
T ss_dssp             SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred             eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence            47899999998 78898888999999999999999855  66888899999999999998877765 4478889999998


Q ss_pred             ccCCCC
Q 039964           79 NELCGL   84 (175)
Q Consensus        79 N~l~~~   84 (175)
                      |.+.+.
T Consensus        98 N~i~~~  103 (149)
T 2je0_A           98 NKIKDL  103 (149)
T ss_dssp             SCCCSH
T ss_pred             CcCCCh
Confidence            887764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.24  E-value=4.3e-11  Score=88.58  Aligned_cols=86  Identities=23%  Similarity=0.230  Sum_probs=72.3

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|++|++++|++++..+.. ..+++++.+++++|
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (208)
T 2o6s_A           55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN  134 (208)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence            47999999999655566789999999999999999665566789999999999999999877764 67888999999999


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+.+.+.
T Consensus       135 ~l~~~~~  141 (208)
T 2o6s_A          135 QLKSVPD  141 (208)
T ss_dssp             CCSCCCT
T ss_pred             ccceeCH
Confidence            8877654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=1.5e-11  Score=97.73  Aligned_cols=83  Identities=17%  Similarity=0.143  Sum_probs=74.8

Q ss_pred             EEEeecC-ccccCCChhhcCCcccceeeccc-cccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964            2 WLACVHF-SLTGQITPKIGQLKSLDFLDLSR-NQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG   78 (175)
Q Consensus         2 ~L~Ls~N-~l~g~iP~~~~~l~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~   78 (175)
                      .++++++ .|+ .||. ++.+++|+.|+|++ |.|++..|..|..+++|+.|+|++|+|++.+|.. ..+.+|+.|++++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4688888 898 5999 99999999999996 9999877788999999999999999999998876 7789999999999


Q ss_pred             ccCCCCCC
Q 039964           79 NELCGLPL   86 (175)
Q Consensus        79 N~l~~~p~   86 (175)
                      |.|.+.|.
T Consensus        90 N~l~~~~~   97 (347)
T 2ifg_A           90 NALESLSW   97 (347)
T ss_dssp             SCCSCCCS
T ss_pred             CccceeCH
Confidence            99988764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.23  E-value=9.2e-12  Score=87.53  Aligned_cols=83  Identities=23%  Similarity=0.346  Sum_probs=71.5

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCC--CCCcccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKI--PSGTQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~i--P~~~~~~~l~~l~~~~   78 (175)
                      ++|++++|.+++.  ..++.+++|+.|++++|.+++.+|..+..+++|++|++++|++++..  +....+++++.+++++
T Consensus        45 ~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~  122 (149)
T 2je0_A           45 EFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN  122 (149)
T ss_dssp             CEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred             cEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence            4799999999865  77899999999999999999878988888999999999999999743  3347788999999999


Q ss_pred             ccCCCCC
Q 039964           79 NELCGLP   85 (175)
Q Consensus        79 N~l~~~p   85 (175)
                      |.+.+.+
T Consensus       123 N~l~~~~  129 (149)
T 2je0_A          123 CEVTNLN  129 (149)
T ss_dssp             CGGGGST
T ss_pred             CcccchH
Confidence            9887654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.23  E-value=1.9e-11  Score=89.94  Aligned_cols=84  Identities=23%  Similarity=0.305  Sum_probs=54.8

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+.+.+|....+++|+.+++++|.
T Consensus        91 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A           91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             CEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred             CEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence            35667777776666666667777777777777776666666677777777777777633344544556667777777766


Q ss_pred             CCCC
Q 039964           81 LCGL   84 (175)
Q Consensus        81 l~~~   84 (175)
                      +.+.
T Consensus       171 i~~~  174 (197)
T 4ezg_A          171 VHDY  174 (197)
T ss_dssp             CCCC
T ss_pred             CcCh
Confidence            6543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.23  E-value=3.5e-11  Score=95.47  Aligned_cols=80  Identities=14%  Similarity=0.160  Sum_probs=57.7

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.++ .+|..++.+++|+.|+|++|.++ .+|..+..+++|++|++++|++.+.+|.. ..+++|+.+++++|
T Consensus       186 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n  263 (328)
T 4fcg_A          186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC  263 (328)
T ss_dssp             CEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred             CEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence            46777777777 67777777777777777777777 35666777777777777777777777765 56667777777776


Q ss_pred             cCC
Q 039964           80 ELC   82 (175)
Q Consensus        80 ~l~   82 (175)
                      .+.
T Consensus       264 ~~~  266 (328)
T 4fcg_A          264 SNL  266 (328)
T ss_dssp             TTC
T ss_pred             Cch
Confidence            443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.22  E-value=1e-11  Score=88.95  Aligned_cols=84  Identities=25%  Similarity=0.374  Sum_probs=73.7

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCC--CCCcccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKI--PSGTQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~i--P~~~~~~~l~~l~~~~   78 (175)
                      ++|+|++|.+++.  ..+..+++|+.|+|++|.+++.+|..+..+++|++|++++|++++..  +....+++++.+++++
T Consensus        52 ~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~  129 (168)
T 2ell_A           52 EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN  129 (168)
T ss_dssp             CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred             CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence            5799999999965  78999999999999999999889988888999999999999999754  3446788999999999


Q ss_pred             ccCCCCCC
Q 039964           79 NELCGLPL   86 (175)
Q Consensus        79 N~l~~~p~   86 (175)
                      |.+.+.+.
T Consensus       130 N~l~~~~~  137 (168)
T 2ell_A          130 CEVTNLND  137 (168)
T ss_dssp             SGGGTSTT
T ss_pred             CcCcchHH
Confidence            98887654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.22  E-value=4.6e-11  Score=92.17  Aligned_cols=86  Identities=22%  Similarity=0.237  Sum_probs=62.7

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|++|++++|++++..|.. ..+++++.+++++|
T Consensus        88 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  167 (272)
T 3rfs_A           88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN  167 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC
Confidence            46778888887666666777788888888888887666666777788888888888877666654 56677777777777


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+.+.+.
T Consensus       168 ~l~~~~~  174 (272)
T 3rfs_A          168 QLQSLPE  174 (272)
T ss_dssp             CCCCCCT
T ss_pred             CcCccCH
Confidence            7666543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.22  E-value=2.3e-11  Score=96.47  Aligned_cols=83  Identities=18%  Similarity=0.138  Sum_probs=75.4

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.++ .+|+.++.+++|+.|+|++|++.+.+|..+..+++|+.|++++|++.+.+|.. ..+++|+.+++++|
T Consensus       209 ~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          209 KSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             CEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred             CEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence            57999999999 48888999999999999999999999999999999999999999999999976 77889999999999


Q ss_pred             cCCCC
Q 039964           80 ELCGL   84 (175)
Q Consensus        80 ~l~~~   84 (175)
                      .+.+.
T Consensus       288 ~~~~~  292 (328)
T 4fcg_A          288 VNLSR  292 (328)
T ss_dssp             TTCCC
T ss_pred             Cchhh
Confidence            65543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.21  E-value=6.2e-11  Score=91.41  Aligned_cols=82  Identities=27%  Similarity=0.312  Sum_probs=47.4

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~   80 (175)
                      +|+|++|.+++ + +.+..+++|+.|+|++|.+++..|..+..+++|++|++++|++++..|.. ..+++++.+++++|.
T Consensus        67 ~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  144 (272)
T 3rfs_A           67 YLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ  144 (272)
T ss_dssp             EEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc
Confidence            56666666654 2 34566666666666666666544444556666666666666666555543 445556666666665


Q ss_pred             CCCCC
Q 039964           81 LCGLP   85 (175)
Q Consensus        81 l~~~p   85 (175)
                      +.+.+
T Consensus       145 l~~~~  149 (272)
T 3rfs_A          145 LQSLP  149 (272)
T ss_dssp             CCCCC
T ss_pred             cCccC
Confidence            55443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.20  E-value=6.4e-11  Score=92.46  Aligned_cols=85  Identities=27%  Similarity=0.224  Sum_probs=60.7

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.++ .+|..+..+++|+.|+|++|++++..|..+..+++|++|++++|++++.++.. ..+++++.+++++|
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            35777777776 67777777777777888877777555566777777777777777777665554 45667777777777


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+.+.|.
T Consensus       159 ~l~~l~~  165 (290)
T 1p9a_G          159 NLTELPA  165 (290)
T ss_dssp             CCSCCCT
T ss_pred             cCCccCH
Confidence            7766554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.20  E-value=2.9e-11  Score=102.77  Aligned_cols=83  Identities=24%  Similarity=0.330  Sum_probs=76.2

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCC-CCC-cccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKI-PSG-TQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~i-P~~-~~~~~l~~l~~~~   78 (175)
                      +.|+|++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++.+ |.. ..+++|+.+++++
T Consensus       466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~  542 (567)
T 1dce_A          466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG  542 (567)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence            57999999999 899999999999999999999996 78 8999999999999999999986 665 7889999999999


Q ss_pred             ccCCCCCC
Q 039964           79 NELCGLPL   86 (175)
Q Consensus        79 N~l~~~p~   86 (175)
                      |.+++.|.
T Consensus       543 N~l~~~~~  550 (567)
T 1dce_A          543 NSLCQEEG  550 (567)
T ss_dssp             SGGGGSSS
T ss_pred             CcCCCCcc
Confidence            99987654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.19  E-value=7.9e-11  Score=91.93  Aligned_cols=86  Identities=22%  Similarity=0.183  Sum_probs=74.6

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++.++.. ..+++++.+++++|
T Consensus       103 ~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC
Confidence            57999999999766788999999999999999999766667889999999999999999766654 56889999999999


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+...|.
T Consensus       183 ~l~~ip~  189 (290)
T 1p9a_G          183 SLYTIPK  189 (290)
T ss_dssp             CCCCCCT
T ss_pred             cCCccCh
Confidence            8886654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.19  E-value=3.5e-11  Score=96.49  Aligned_cols=82  Identities=24%  Similarity=0.161  Sum_probs=47.0

Q ss_pred             EEEeecCccccCCChhhc-CCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            2 WLACVHFSLTGQITPKIG-QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~-~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      +|+|++|.+++..+..+. .+++|+.|+|++|++++..|..+..+++|++|+|++|++++..+.. ..+.+|+.+++++|
T Consensus        43 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  122 (361)
T 2xot_A           43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN  122 (361)
T ss_dssp             EEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC
Confidence            566666666654444454 5666666666666666544455666666666666666665544432 44555555555555


Q ss_pred             cCCC
Q 039964           80 ELCG   83 (175)
Q Consensus        80 ~l~~   83 (175)
                      .+.+
T Consensus       123 ~i~~  126 (361)
T 2xot_A          123 HIVV  126 (361)
T ss_dssp             CCCE
T ss_pred             cccE
Confidence            5443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.18  E-value=4.4e-11  Score=97.95  Aligned_cols=83  Identities=24%  Similarity=0.213  Sum_probs=41.2

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~   80 (175)
                      +|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|++|++++|++++..|.. ..+++++.+++++|.
T Consensus       303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence            3445555554444444555555555555555554444444555555555555555555444433 344455555555554


Q ss_pred             CCCC
Q 039964           81 LCGL   84 (175)
Q Consensus        81 l~~~   84 (175)
                      +.+.
T Consensus       383 l~~~  386 (455)
T 3v47_A          383 LKSV  386 (455)
T ss_dssp             CSCC
T ss_pred             cccC
Confidence            4443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.17  E-value=6.9e-11  Score=96.80  Aligned_cols=83  Identities=22%  Similarity=0.126  Sum_probs=75.6

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..+..+++|+.|||++|.+++..|..+..+++|++|++++|++++.++.. ..+++++.+++++|
T Consensus       326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence            57999999999888999999999999999999999888999999999999999999999876655 67889999999999


Q ss_pred             cCCC
Q 039964           80 ELCG   83 (175)
Q Consensus        80 ~l~~   83 (175)
                      .+.+
T Consensus       406 ~l~~  409 (455)
T 3v47_A          406 PWDC  409 (455)
T ss_dssp             CBCC
T ss_pred             Cccc
Confidence            7654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.17  E-value=3.4e-11  Score=94.61  Aligned_cols=82  Identities=17%  Similarity=0.220  Sum_probs=64.3

Q ss_pred             CEEEeecCccccCCChhh--cCCcccceeeccccccCccCchhhhCC-----CCCCEEeccCCcCCCCCCCC-cccCCCC
Q 039964            1 MWLACVHFSLTGQITPKI--GQLKSLDFLDLSRNQFFGGISSSLSRL-----SRLSVMDLSYNNLSGKIPSG-TQLQSFN   72 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~--~~l~~L~~L~Ls~N~l~g~iP~~~~~l-----~~L~~L~ls~N~l~g~iP~~-~~~~~l~   72 (175)
                      ++|+|++|.++|.+|..+  ..+++|+.|||++|.+++. |..+..+     ++|++|++++|++++..|.. ..+++++
T Consensus        98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~  176 (312)
T 1wwl_A           98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS  176 (312)
T ss_dssp             CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred             cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence            468888888888888876  7888888888888888866 7777766     78888888888888777655 6677888


Q ss_pred             eeeccCccCCC
Q 039964           73 ALTYAGNELCG   83 (175)
Q Consensus        73 ~l~~~~N~l~~   83 (175)
                      .+++++|.+.+
T Consensus       177 ~L~Ls~N~l~~  187 (312)
T 1wwl_A          177 TLDLSDNPELG  187 (312)
T ss_dssp             EEECCSCTTCH
T ss_pred             EEECCCCCcCc
Confidence            88888886543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.15  E-value=3.5e-11  Score=105.02  Aligned_cols=77  Identities=27%  Similarity=0.315  Sum_probs=37.6

Q ss_pred             EEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCccC
Q 039964            3 LACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNEL   81 (175)
Q Consensus         3 L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~l   81 (175)
                      |+|++|.|+ .+|..++.|++|+.|||++|.|+ .+|..++.|++|++|+|++|.++ .+|.. ..+.+|..+++++|.+
T Consensus       252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             CBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred             EEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence            444555554 44544555555555555555554 44555555555555555555544 23332 3444455555555544


Q ss_pred             C
Q 039964           82 C   82 (175)
Q Consensus        82 ~   82 (175)
                      .
T Consensus       329 ~  329 (727)
T 4b8c_D          329 E  329 (727)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.15  E-value=1.5e-10  Score=91.35  Aligned_cols=90  Identities=22%  Similarity=0.259  Sum_probs=74.4

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|++++|.+++..|..+..+++|+.|+|++|.+++..+..+..+++|+.|++++|+++ .+|.. ..+++++.+++++|
T Consensus       195 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS
T ss_pred             CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCC
Confidence            46888889988877888999999999999999998777778888999999999999998 55543 67788899999999


Q ss_pred             cCCCCCCCCCCC
Q 039964           80 ELCGLPLPNKCP   91 (175)
Q Consensus        80 ~l~~~p~~~~c~   91 (175)
                      .+.+.+...-|.
T Consensus       274 ~i~~~~~~~f~~  285 (330)
T 1xku_A          274 NISAIGSNDFCP  285 (330)
T ss_dssp             CCCCCCTTSSSC
T ss_pred             cCCccChhhcCC
Confidence            888877655553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.14  E-value=7.6e-11  Score=94.55  Aligned_cols=86  Identities=21%  Similarity=0.198  Sum_probs=74.2

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..|..+++|+.|||++|+|++..+..+..+++|+.|+|++|++++..|.. ..+.+|+.+++++|
T Consensus        67 ~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A           67 HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence            47999999999777778999999999999999999766667899999999999999999877765 67788999999999


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+.+.|.
T Consensus       147 ~l~~l~~  153 (361)
T 2xot_A          147 QISRFPV  153 (361)
T ss_dssp             CCCSCCG
T ss_pred             cCCeeCH
Confidence            8887654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.14  E-value=1.7e-11  Score=105.21  Aligned_cols=84  Identities=14%  Similarity=0.223  Sum_probs=50.6

Q ss_pred             CEEEeecCccccC-----------------CChhhc--CCcccceeeccccccCccCchhhhCCCCCCEEeccCCc-CCC
Q 039964            1 MWLACVHFSLTGQ-----------------ITPKIG--QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNN-LSG   60 (175)
Q Consensus         1 ~~L~Ls~N~l~g~-----------------iP~~~~--~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~-l~g   60 (175)
                      ++|+|++|.++|.                 +|+.++  ++++|+.|+|++|.+.|.+|..++++++|++|++++|+ ++|
T Consensus       209 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~  288 (636)
T 4eco_A          209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG  288 (636)
T ss_dssp             CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred             CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence            3566666666664                 666666  66666666666666666666666666666666666665 665


Q ss_pred             -CCCCC-ccc------CCCCeeeccCccCCCC
Q 039964           61 -KIPSG-TQL------QSFNALTYAGNELCGL   84 (175)
Q Consensus        61 -~iP~~-~~~------~~l~~l~~~~N~l~~~   84 (175)
                       .+|.. ..+      ++++.+++++|.+...
T Consensus       289 ~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i  320 (636)
T 4eco_A          289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTF  320 (636)
T ss_dssp             HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred             ccchHHHHhhhccccCCCCCEEECCCCcCCcc
Confidence             45543 222      4555555555544433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.14  E-value=2.2e-10  Score=88.16  Aligned_cols=86  Identities=26%  Similarity=0.244  Sum_probs=61.7

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..+..+..+++|+.|+|++|.+++..|..+..+++|++|++++|.+++..+.. ..+++|+.+++++|
T Consensus        88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A           88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence            46788888887555556677788888888888887666666777788888888888777655543 55677777777777


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+.+.+.
T Consensus       168 ~l~~~~~  174 (270)
T 2o6q_A          168 QLKRVPE  174 (270)
T ss_dssp             CCSCCCT
T ss_pred             cCcEeCh
Confidence            6665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.14  E-value=4.7e-11  Score=86.33  Aligned_cols=80  Identities=20%  Similarity=0.223  Sum_probs=51.6

Q ss_pred             EEEeecCccccCCChhhcCCc-ccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            2 WLACVHFSLTGQITPKIGQLK-SLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      +|++++|.++ .+|. +..+. +|+.|||++|.+++.  ..+..+++|++|++++|++++.+|.. ..+++++.+++++|
T Consensus        23 ~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N   98 (176)
T 1a9n_A           23 ELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN   98 (176)
T ss_dssp             EEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred             EEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC
Confidence            5677777776 4554 33333 777777777777743  45667777777777777777554444 55667777777777


Q ss_pred             cCCCCC
Q 039964           80 ELCGLP   85 (175)
Q Consensus        80 ~l~~~p   85 (175)
                      .+...|
T Consensus        99 ~i~~~~  104 (176)
T 1a9n_A           99 SLVELG  104 (176)
T ss_dssp             CCCCGG
T ss_pred             cCCcch
Confidence            665433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.12  E-value=9.4e-11  Score=96.50  Aligned_cols=85  Identities=19%  Similarity=0.214  Sum_probs=71.7

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..|.++++|+.|+|++|.+++..|..+..+++|++|+|++|++++..+.. ..+++|+.+++++|
T Consensus        78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  157 (452)
T 3zyi_A           78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN  157 (452)
T ss_dssp             SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred             cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence            47899999999888888999999999999999999877788889999999999999998766664 56788888888888


Q ss_pred             cCCCCC
Q 039964           80 ELCGLP   85 (175)
Q Consensus        80 ~l~~~p   85 (175)
                      .+.+.+
T Consensus       158 ~l~~~~  163 (452)
T 3zyi_A          158 PIESIP  163 (452)
T ss_dssp             CCCEEC
T ss_pred             CcceeC
Confidence            776544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.12  E-value=1.5e-10  Score=90.33  Aligned_cols=86  Identities=26%  Similarity=0.247  Sum_probs=73.9

Q ss_pred             CEEEeecCcccc-CCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964            1 MWLACVHFSLTG-QITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g-~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~   78 (175)
                      ++|+|++|.+++ .+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+.. ..+++++.+++++
T Consensus       153 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  232 (306)
T 2z66_A          153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL  232 (306)
T ss_dssp             CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT
T ss_pred             CEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCC
Confidence            478999999987 58888999999999999999999877888999999999999999998766644 6678899999999


Q ss_pred             ccCCCCCC
Q 039964           79 NELCGLPL   86 (175)
Q Consensus        79 N~l~~~p~   86 (175)
                      |.+.+.+.
T Consensus       233 N~l~~~~~  240 (306)
T 2z66_A          233 NHIMTSKK  240 (306)
T ss_dssp             SCCCBCSS
T ss_pred             CCCcccCH
Confidence            98876543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.11  E-value=3.6e-10  Score=86.96  Aligned_cols=86  Identities=23%  Similarity=0.196  Sum_probs=65.1

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.++...+..+..+++|+.|+|++|.+++..+..+..+++|++|++++|++++..|.. ..+++|+.+++++|
T Consensus        64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A           64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence            46888888887444444577888888888888888655556778888888888888888777665 56778888888888


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+.+.+.
T Consensus       144 ~l~~~~~  150 (270)
T 2o6q_A          144 ELQSLPK  150 (270)
T ss_dssp             CCCCCCT
T ss_pred             cCCccCH
Confidence            7776554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.11  E-value=1.9e-10  Score=88.90  Aligned_cols=84  Identities=19%  Similarity=0.144  Sum_probs=66.3

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+.. ..+++++.+++++|
T Consensus       108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  187 (285)
T 1ozn_A          108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (285)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence            46888888888777778888888888888888888655566788888888888888888666653 56778888888888


Q ss_pred             cCCCC
Q 039964           80 ELCGL   84 (175)
Q Consensus        80 ~l~~~   84 (175)
                      .+.+.
T Consensus       188 ~l~~~  192 (285)
T 1ozn_A          188 RVAHV  192 (285)
T ss_dssp             CCCEE
T ss_pred             ccccc
Confidence            76654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.10  E-value=3.3e-10  Score=87.58  Aligned_cols=81  Identities=23%  Similarity=0.155  Sum_probs=36.4

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccc-cCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQ-FFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      +|+|++|.+++..|..+..+++|+.|++++|. ++...|..+..+++|++|++++|.+++..|.. ..+++++.+++++|
T Consensus        60 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  139 (285)
T 1ozn_A           60 ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN  139 (285)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC
Confidence            34444444444444444444444444444443 33222344444444444444444444443332 33444444444444


Q ss_pred             cCC
Q 039964           80 ELC   82 (175)
Q Consensus        80 ~l~   82 (175)
                      .+.
T Consensus       140 ~l~  142 (285)
T 1ozn_A          140 ALQ  142 (285)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.10  E-value=1.8e-10  Score=97.70  Aligned_cols=85  Identities=21%  Similarity=0.185  Sum_probs=56.3

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..|.++++|+.|||++|.+++..|..+.++++|++|++++|.+++..|.. ..+.+|+.+++++|
T Consensus        35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  114 (606)
T 3vq2_A           35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET  114 (606)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred             CEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence            35677777777666666777777777777777777655666677777777777777777665654 55666666666666


Q ss_pred             cCCCCC
Q 039964           80 ELCGLP   85 (175)
Q Consensus        80 ~l~~~p   85 (175)
                      .+.+.+
T Consensus       115 ~l~~~~  120 (606)
T 3vq2_A          115 KLASLE  120 (606)
T ss_dssp             CCCCSS
T ss_pred             cccccc
Confidence            555433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.10  E-value=1.9e-10  Score=100.39  Aligned_cols=84  Identities=24%  Similarity=0.315  Sum_probs=76.0

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      +.|+|++|.+. .+|..+..+++|+.|+|++|.|+ .+|..+..+++|++|+|++|.|+ .+|.. ..+.+|..|++++|
T Consensus       227 ~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N  303 (727)
T 4b8c_D          227 HALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN  303 (727)
T ss_dssp             CEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSS
T ss_pred             cEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCC
Confidence            47999999998 89999999999999999999999 99999999999999999999999 66765 78889999999999


Q ss_pred             cCCCCCCC
Q 039964           80 ELCGLPLP   87 (175)
Q Consensus        80 ~l~~~p~~   87 (175)
                      .+...|..
T Consensus       304 ~l~~lp~~  311 (727)
T 4b8c_D          304 MVTTLPWE  311 (727)
T ss_dssp             CCCCCCSS
T ss_pred             CCCccChh
Confidence            88766643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.10  E-value=1.3e-10  Score=96.77  Aligned_cols=81  Identities=23%  Similarity=0.135  Sum_probs=62.2

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|+|++|.+++..|..+..+++|+.|+|++|++++..|..+..+++|++||+++|+++ .+|.. .+.+++.+++++|.
T Consensus        24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~L~~N~  101 (520)
T 2z7x_B           24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH-PTVNLKHLDLSFNA  101 (520)
T ss_dssp             SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC-CCCCCSEEECCSSC
T ss_pred             cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc-ccCCccEEeccCCc
Confidence            46788888888766677888888888888888888776777888888888888888887 45554 66777778887777


Q ss_pred             CCC
Q 039964           81 LCG   83 (175)
Q Consensus        81 l~~   83 (175)
                      +.+
T Consensus       102 l~~  104 (520)
T 2z7x_B          102 FDA  104 (520)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.09  E-value=1.1e-10  Score=97.73  Aligned_cols=83  Identities=23%  Similarity=0.123  Sum_probs=55.5

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|++||+++|++++.+|.. ..+++++.+++++|
T Consensus        29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  108 (549)
T 2z81_A           29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN  108 (549)
T ss_dssp             CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred             cEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence            35677777777666666777777777777777777666666667777777777777776666552 55666666666666


Q ss_pred             cCCC
Q 039964           80 ELCG   83 (175)
Q Consensus        80 ~l~~   83 (175)
                      .+.+
T Consensus       109 ~l~~  112 (549)
T 2z81_A          109 PYQT  112 (549)
T ss_dssp             CCSS
T ss_pred             cccc
Confidence            5553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.09  E-value=1.4e-10  Score=98.34  Aligned_cols=83  Identities=19%  Similarity=0.209  Sum_probs=61.0

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..|+++++|+.|||++|.+++..|..+.++++|++|++++|++++..|.. ..+++++.+++++|
T Consensus        36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  115 (606)
T 3t6q_A           36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT  115 (606)
T ss_dssp             CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred             cEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence            46778888887766777777888888888888777766777777777888888777777766654 55666777777776


Q ss_pred             cCCC
Q 039964           80 ELCG   83 (175)
Q Consensus        80 ~l~~   83 (175)
                      .+.+
T Consensus       116 ~i~~  119 (606)
T 3t6q_A          116 GISS  119 (606)
T ss_dssp             CCSC
T ss_pred             Cccc
Confidence            6554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.09  E-value=2.2e-10  Score=88.24  Aligned_cols=84  Identities=23%  Similarity=0.155  Sum_probs=55.0

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|++++|.+++..+..+.++++|+.|++++|.+++..+..+..+++|++|++++|.+++..|.. ..+.+++.+++++|
T Consensus        31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  110 (276)
T 2z62_A           31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  110 (276)
T ss_dssp             CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence            35677777777555556777777777777777777555556667777777777777776665543 45566666666666


Q ss_pred             cCCCC
Q 039964           80 ELCGL   84 (175)
Q Consensus        80 ~l~~~   84 (175)
                      .+.+.
T Consensus       111 ~l~~~  115 (276)
T 2z62_A          111 NLASL  115 (276)
T ss_dssp             CCCCS
T ss_pred             Ccccc
Confidence            55543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.08  E-value=2e-10  Score=96.89  Aligned_cols=83  Identities=25%  Similarity=0.218  Sum_probs=65.5

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|++||+++|+++ .+|.. .+.+|+.+++++|.
T Consensus        55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls~N~  132 (562)
T 3a79_B           55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC-PMASLRHLDLSFND  132 (562)
T ss_dssp             CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC-CCTTCSEEECCSSC
T ss_pred             CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc-ccccCCEEECCCCC
Confidence            46888888888766678888888888888888888777778888888888888888887 45555 67778888888887


Q ss_pred             CCCCC
Q 039964           81 LCGLP   85 (175)
Q Consensus        81 l~~~p   85 (175)
                      +.+.+
T Consensus       133 l~~l~  137 (562)
T 3a79_B          133 FDVLP  137 (562)
T ss_dssp             CSBCC
T ss_pred             ccccC
Confidence            76543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.08  E-value=2.3e-10  Score=84.15  Aligned_cols=81  Identities=21%  Similarity=0.295  Sum_probs=68.8

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|+|++|.+++..|..+..+++|+.|++++|.+.+.+| .+..+++|+.|++++|++++ ++....+++++.+++++|.
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC-
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcc
Confidence            579999999998899999999999999999998444777 68999999999999999997 4455788999999999997


Q ss_pred             CCC
Q 039964           81 LCG   83 (175)
Q Consensus        81 l~~   83 (175)
                      +.+
T Consensus       193 i~~  195 (197)
T 4ezg_A          193 IGG  195 (197)
T ss_dssp             ---
T ss_pred             cCC
Confidence            653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.08  E-value=1.6e-10  Score=90.24  Aligned_cols=85  Identities=24%  Similarity=0.341  Sum_probs=64.3

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCc-cCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFG-GISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~   78 (175)
                      ++|++++|.+++..|..+..+++|+.|++++|.+++ .+|..+..+++|++|++++|++++..|.. ..+++++.+++++
T Consensus       129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  208 (306)
T 2z66_A          129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  208 (306)
T ss_dssp             CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence            367777777777777777778888888888888876 46777778888888888888888776655 5667788888888


Q ss_pred             ccCCCCC
Q 039964           79 NELCGLP   85 (175)
Q Consensus        79 N~l~~~p   85 (175)
                      |.+.+.+
T Consensus       209 N~l~~~~  215 (306)
T 2z66_A          209 NNFFSLD  215 (306)
T ss_dssp             SCCSBCC
T ss_pred             CccCccC
Confidence            8776544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.07  E-value=2.3e-10  Score=90.38  Aligned_cols=89  Identities=24%  Similarity=0.252  Sum_probs=74.2

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|++++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|+.|++++|+++ .+|.. ..+++++.+++++|
T Consensus       196 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             SCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCC
Confidence            35788899998777788999999999999999999877778899999999999999998 56654 77888999999999


Q ss_pred             cCCCCCCCCCC
Q 039964           80 ELCGLPLPNKC   90 (175)
Q Consensus        80 ~l~~~p~~~~c   90 (175)
                      .+.+.+...-|
T Consensus       275 ~l~~~~~~~~~  285 (332)
T 2ft3_A          275 NITKVGVNDFC  285 (332)
T ss_dssp             CCCBCCTTSSS
T ss_pred             CCCccChhHcc
Confidence            88877655443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.07  E-value=2.6e-10  Score=93.82  Aligned_cols=80  Identities=21%  Similarity=0.060  Sum_probs=64.6

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..|..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++.++.. ..+++++.+++++|
T Consensus       221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence            46788888888777888888888888888888888777778888888888888888888666654 56778888888888


Q ss_pred             c
Q 039964           80 E   80 (175)
Q Consensus        80 ~   80 (175)
                      .
T Consensus       301 p  301 (452)
T 3zyi_A          301 P  301 (452)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.06  E-value=2.5e-10  Score=95.83  Aligned_cols=86  Identities=26%  Similarity=0.365  Sum_probs=70.1

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccC-ccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFF-GGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~   78 (175)
                      ++|++++|.+.+.+|..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|++++.+|.. ..+++++.+++++
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence            46888888888888888888888888888888887 578888888888888888888888877765 6677888888888


Q ss_pred             ccCCCCCC
Q 039964           79 NELCGLPL   86 (175)
Q Consensus        79 N~l~~~p~   86 (175)
                      |.+.+.+.
T Consensus       504 n~l~~~~~  511 (570)
T 2z63_A          504 NQLKSVPD  511 (570)
T ss_dssp             SCCSCCCT
T ss_pred             CcCCCCCH
Confidence            87777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.06  E-value=3.8e-10  Score=96.08  Aligned_cols=83  Identities=16%  Similarity=0.091  Sum_probs=45.3

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~   80 (175)
                      +|+|++|.+++..|..|+.+++|+.|+|++|.+++..|..++.+++|++|+|++|.+++.++.. ..+++|..+++++|.
T Consensus        79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~  158 (597)
T 3oja_B           79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN  158 (597)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc
Confidence            4555555555555555555555666666665555544445555555555555555555444433 345555555555554


Q ss_pred             CCCC
Q 039964           81 LCGL   84 (175)
Q Consensus        81 l~~~   84 (175)
                      +.+.
T Consensus       159 l~~~  162 (597)
T 3oja_B          159 LERI  162 (597)
T ss_dssp             CCBC
T ss_pred             CCCC
Confidence            4443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.06  E-value=4.2e-10  Score=95.84  Aligned_cols=85  Identities=18%  Similarity=0.117  Sum_probs=72.9

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..|+.+++|+.|+|++|.+++..+..++.+++|++|++++|.+++.+|.. ..+++|..+++++|
T Consensus       102 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence            47999999999888888899999999999999999544445689999999999999999888865 67888999999999


Q ss_pred             cCCCCC
Q 039964           80 ELCGLP   85 (175)
Q Consensus        80 ~l~~~p   85 (175)
                      .+.+.+
T Consensus       182 ~l~~~~  187 (597)
T 3oja_B          182 RLTHVD  187 (597)
T ss_dssp             CCSBCC
T ss_pred             CCCCcC
Confidence            877653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.06  E-value=2.9e-10  Score=93.90  Aligned_cols=84  Identities=18%  Similarity=0.128  Sum_probs=65.1

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..|..+++|+.|+|++|.+++..|..+.++++|++|+|++|++++..+.. ..+++|+.+++++|
T Consensus        35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  114 (477)
T 2id5_A           35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN  114 (477)
T ss_dssp             SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred             cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC
Confidence            46888888888777778888888888888888888777788888888888888888888655543 56677777877777


Q ss_pred             cCCCC
Q 039964           80 ELCGL   84 (175)
Q Consensus        80 ~l~~~   84 (175)
                      .+.+.
T Consensus       115 ~i~~~  119 (477)
T 2id5_A          115 KIVIL  119 (477)
T ss_dssp             CCCEE
T ss_pred             ccccC
Confidence            66543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.06  E-value=3.4e-10  Score=95.91  Aligned_cols=83  Identities=20%  Similarity=0.132  Sum_probs=62.5

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..|.++++|+.|||++|.+++..|..++++++|++|++++|.+++..|.. ..+.+|+.+++++|
T Consensus        59 ~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  138 (606)
T 3vq2_A           59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN  138 (606)
T ss_dssp             CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS
T ss_pred             cEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC
Confidence            46788888888766777888888888888888888766777888888888888888877666544 56667777777777


Q ss_pred             cCCC
Q 039964           80 ELCG   83 (175)
Q Consensus        80 ~l~~   83 (175)
                      .+.+
T Consensus       139 ~l~~  142 (606)
T 3vq2_A          139 FIHS  142 (606)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            6654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.06  E-value=3.4e-10  Score=92.86  Aligned_cols=84  Identities=19%  Similarity=0.184  Sum_probs=67.1

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..+..|.++++|+.|+|++|.+++..|..+..+++|++|+|++|++++..+.. ..+.+|+.+++++|
T Consensus        67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  146 (440)
T 3zyj_A           67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN  146 (440)
T ss_dssp             SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred             cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence            46888888888777788888888888888888888766678888888888888888888666643 56777888888888


Q ss_pred             cCCCC
Q 039964           80 ELCGL   84 (175)
Q Consensus        80 ~l~~~   84 (175)
                      .+.+.
T Consensus       147 ~i~~~  151 (440)
T 3zyj_A          147 PIESI  151 (440)
T ss_dssp             CCCEE
T ss_pred             ccccc
Confidence            66544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.05  E-value=5.4e-11  Score=105.67  Aligned_cols=83  Identities=18%  Similarity=0.314  Sum_probs=39.9

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccc-cCc-cCchhhhCCC-------CCCEEeccCCcCCCCCCC--C-cccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQ-FFG-GISSSLSRLS-------RLSVMDLSYNNLSGKIPS--G-TQLQ   69 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~-l~g-~iP~~~~~l~-------~L~~L~ls~N~l~g~iP~--~-~~~~   69 (175)
                      +|+|++|.+.|.+|..++++++|+.|+|++|+ ++| .+|..++.++       +|+.|++++|+++ .+|.  . ..++
T Consensus       495 ~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~  573 (876)
T 4ecn_A          495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV  573 (876)
T ss_dssp             EEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred             EEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence            34444444444444444444444444444444 444 4444433332       4445555555444 4444  2 4455


Q ss_pred             CCCeeeccCccCCCCC
Q 039964           70 SFNALTYAGNELCGLP   85 (175)
Q Consensus        70 ~l~~l~~~~N~l~~~p   85 (175)
                      +|+.+++++|.+...|
T Consensus       574 ~L~~L~Ls~N~l~~lp  589 (876)
T 4ecn_A          574 KLGLLDCVHNKVRHLE  589 (876)
T ss_dssp             TCCEEECTTSCCCBCC
T ss_pred             CCCEEECCCCCcccch
Confidence            5666666666554333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.05  E-value=2.9e-10  Score=93.28  Aligned_cols=81  Identities=19%  Similarity=0.060  Sum_probs=66.3

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      +.|+|++|.+++..|..|..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+.. ..+.+++.+++++|
T Consensus       210 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             CEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence            46788888888777888888888888888888888777778888888999999999888766665 56778888888888


Q ss_pred             cC
Q 039964           80 EL   81 (175)
Q Consensus        80 ~l   81 (175)
                      .+
T Consensus       290 p~  291 (440)
T 3zyj_A          290 PW  291 (440)
T ss_dssp             CE
T ss_pred             Cc
Confidence            43

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.05  E-value=2e-10  Score=91.44  Aligned_cols=83  Identities=29%  Similarity=0.220  Sum_probs=44.7

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCC-CcccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS-GTQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~-~~~~~~l~~l~~~~N~   80 (175)
                      +|++++|.+++..+..+.++++|+.|+|++|.+++..|..+.++++|++|++++|++++..+. ...+++++.+++++|.
T Consensus        56 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  135 (353)
T 2z80_A           56 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP  135 (353)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC
T ss_pred             EEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC
Confidence            455666665543333555556666666666665554455555555566666665555543333 1344555555555555


Q ss_pred             CCCC
Q 039964           81 LCGL   84 (175)
Q Consensus        81 l~~~   84 (175)
                      +.+.
T Consensus       136 l~~l  139 (353)
T 2z80_A          136 YKTL  139 (353)
T ss_dssp             CSSS
T ss_pred             Cccc
Confidence            4443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.05  E-value=3.5e-10  Score=95.81  Aligned_cols=84  Identities=14%  Similarity=0.091  Sum_probs=70.6

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..|..+++|+.|+|++|.+++..|..++.+++|++|++++|++++..|.. ..+++|+.+++++|
T Consensus        60 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n  139 (606)
T 3t6q_A           60 TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN  139 (606)
T ss_dssp             SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS
T ss_pred             eEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC
Confidence            47899999998888888999999999999999998888888889999999999999988764444 66778888888888


Q ss_pred             cCCCC
Q 039964           80 ELCGL   84 (175)
Q Consensus        80 ~l~~~   84 (175)
                      .+.+.
T Consensus       140 ~l~~~  144 (606)
T 3t6q_A          140 HISSI  144 (606)
T ss_dssp             CCCCC
T ss_pred             ccccc
Confidence            77664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.05  E-value=5e-10  Score=86.20  Aligned_cols=83  Identities=19%  Similarity=0.087  Sum_probs=53.1

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..+..+..+++|+.|+|++|.+++..|..+..+++|++|++++|++++..+.. ..+++++.+++++|
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  134 (276)
T 2z62_A           55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN  134 (276)
T ss_dssp             SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred             cEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC
Confidence            35677777776555556677777777777777776655566666666777777666666555432 45556666666666


Q ss_pred             cCCC
Q 039964           80 ELCG   83 (175)
Q Consensus        80 ~l~~   83 (175)
                      .+.+
T Consensus       135 ~l~~  138 (276)
T 2z62_A          135 LIQS  138 (276)
T ss_dssp             CCCC
T ss_pred             ccce
Confidence            5544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.04  E-value=6.1e-10  Score=95.63  Aligned_cols=84  Identities=21%  Similarity=0.186  Sum_probs=66.9

Q ss_pred             CEEEeecCccccCCChhhc--CCcccceeeccccccCccCchhhhCCCCCCEEec------cCCcCCCCCCCC-cccCCC
Q 039964            1 MWLACVHFSLTGQITPKIG--QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDL------SYNNLSGKIPSG-TQLQSF   71 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~--~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~l------s~N~l~g~iP~~-~~~~~l   71 (175)
                      ++|+|++|.++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|++      ++|++.+.+|.. ..+++|
T Consensus       491 ~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L  568 (636)
T 4eco_A          491 TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL  568 (636)
T ss_dssp             CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred             cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence            46888888888 6888876  88888888888888886 8888888888888888      457788888876 667888


Q ss_pred             CeeeccCccCCCCCC
Q 039964           72 NALTYAGNELCGLPL   86 (175)
Q Consensus        72 ~~l~~~~N~l~~~p~   86 (175)
                      +.+++++|.+...|.
T Consensus       569 ~~L~Ls~N~l~~ip~  583 (636)
T 4eco_A          569 TQLQIGSNDIRKVNE  583 (636)
T ss_dssp             CEEECCSSCCCBCCS
T ss_pred             CEEECCCCcCCccCH
Confidence            888888887754443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.04  E-value=2.6e-10  Score=86.10  Aligned_cols=86  Identities=17%  Similarity=0.133  Sum_probs=62.6

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccc-cCccCchhhhCCCCCCEEeccC-CcCCCCCCCC-cccCCCCeeecc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQ-FFGGISSSLSRLSRLSVMDLSY-NNLSGKIPSG-TQLQSFNALTYA   77 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~L~ls~-N~l~g~iP~~-~~~~~l~~l~~~   77 (175)
                      ++|++++|.+++..+..+..+++|+.|++++|. +++..+..+..+++|++|++++ |++++..+.. ..+++++.++++
T Consensus        34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~  113 (239)
T 2xwt_C           34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF  113 (239)
T ss_dssp             CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred             cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence            467888888886555578888888888888886 7644444677888888888887 8887655554 566777888888


Q ss_pred             CccCCCCCC
Q 039964           78 GNELCGLPL   86 (175)
Q Consensus        78 ~N~l~~~p~   86 (175)
                      +|.+.+.|.
T Consensus       114 ~n~l~~lp~  122 (239)
T 2xwt_C          114 NTGLKMFPD  122 (239)
T ss_dssp             EECCCSCCC
T ss_pred             CCCCccccc
Confidence            777766553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.04  E-value=2.4e-10  Score=89.61  Aligned_cols=83  Identities=25%  Similarity=0.289  Sum_probs=64.3

Q ss_pred             CEEEeecCccccCCCh----hhcCCcccceeeccccccCccCchhhhCC---CCCCEEeccCCcCCCCCCCCcccCCCCe
Q 039964            1 MWLACVHFSLTGQITP----KIGQLKSLDFLDLSRNQFFGGISSSLSRL---SRLSVMDLSYNNLSGKIPSGTQLQSFNA   73 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~----~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l---~~L~~L~ls~N~l~g~iP~~~~~~~l~~   73 (175)
                      ++|+|++|.++ .+|.    .++.+++|+.|||++|.+++.+|..+..+   ++|++|++++|+++ .+|... .++++.
T Consensus       200 ~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~-~~~L~~  276 (310)
T 4glp_A          200 QNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL-PAKLRV  276 (310)
T ss_dssp             CSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC-CSCCSC
T ss_pred             CEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh-cCCCCE
Confidence            35788999886 3443    24677899999999999988778777776   68999999999998 556543 368888


Q ss_pred             eeccCccCCCCCC
Q 039964           74 LTYAGNELCGLPL   86 (175)
Q Consensus        74 l~~~~N~l~~~p~   86 (175)
                      +++++|.+.+.|.
T Consensus       277 L~Ls~N~l~~~~~  289 (310)
T 4glp_A          277 LDLSSNRLNRAPQ  289 (310)
T ss_dssp             EECCSCCCCSCCC
T ss_pred             EECCCCcCCCCch
Confidence            9999998887654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.04  E-value=1.2e-10  Score=97.06  Aligned_cols=81  Identities=17%  Similarity=0.133  Sum_probs=49.4

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhh-CCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLS-RLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      .|+|++|.+++..|..++.+++|+.|||++|.+++.+|..+. .+++|+.|+|++|.+++..+ ...+++|..+++++|.
T Consensus       124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~  202 (487)
T 3oja_A          124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK  202 (487)
T ss_dssp             EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCC
Confidence            566777777766666777777777777777777776666654 55666666666666554422 2234445555555554


Q ss_pred             CCC
Q 039964           81 LCG   83 (175)
Q Consensus        81 l~~   83 (175)
                      +.+
T Consensus       203 l~~  205 (487)
T 3oja_A          203 LAF  205 (487)
T ss_dssp             CCE
T ss_pred             CCC
Confidence            443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.04  E-value=3.2e-10  Score=95.20  Aligned_cols=84  Identities=23%  Similarity=0.269  Sum_probs=59.6

Q ss_pred             CEEEeecCccccCCC-hhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCC-CCCCCC-cccCCCCeeecc
Q 039964            1 MWLACVHFSLTGQIT-PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLS-GKIPSG-TQLQSFNALTYA   77 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP-~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~-g~iP~~-~~~~~l~~l~~~   77 (175)
                      +.|++++|.+.+..| ..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.++ +.+|.. ..+++++.++++
T Consensus       399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~  478 (570)
T 2z63_A          399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  478 (570)
T ss_dssp             CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence            357777777776555 45677777777777777777777777777777777777777776 456654 566777777777


Q ss_pred             CccCCCC
Q 039964           78 GNELCGL   84 (175)
Q Consensus        78 ~N~l~~~   84 (175)
                      +|.+.+.
T Consensus       479 ~n~l~~~  485 (570)
T 2z63_A          479 QCQLEQL  485 (570)
T ss_dssp             TSCCCEE
T ss_pred             CCccccC
Confidence            7766654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.03  E-value=5.5e-10  Score=87.54  Aligned_cols=83  Identities=17%  Similarity=0.130  Sum_probs=69.7

Q ss_pred             CEEEeecCccccCCChhh--cCCcccceeeccccccCccCc----hhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCe
Q 039964            1 MWLACVHFSLTGQITPKI--GQLKSLDFLDLSRNQFFGGIS----SSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNA   73 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~--~~l~~L~~L~Ls~N~l~g~iP----~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~   73 (175)
                      ++|++++|.+++.+|..+  ..+++|+.|+|++|.+++..|    ..+..+++|++|++++|.+++.+|.. ..+++++.
T Consensus        94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  173 (310)
T 4glp_A           94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTS  173 (310)
T ss_dssp             CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCE
T ss_pred             eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCE
Confidence            478999999999999888  889999999999999997665    34567889999999999998877765 67788999


Q ss_pred             eeccCccCCC
Q 039964           74 LTYAGNELCG   83 (175)
Q Consensus        74 l~~~~N~l~~   83 (175)
                      +++++|.+.+
T Consensus       174 L~Ls~N~l~~  183 (310)
T 4glp_A          174 LDLSDNPGLG  183 (310)
T ss_dssp             EECCSCTTCH
T ss_pred             EECCCCCCcc
Confidence            9999997543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.02  E-value=3.7e-10  Score=94.14  Aligned_cols=82  Identities=26%  Similarity=0.291  Sum_probs=67.9

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCc--cCchhhhCCCCCCEEeccCCcCCCCCCCC--cccCCCCeeec
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFG--GISSSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFNALTY   76 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~L~ls~N~l~g~iP~~--~~~~~l~~l~~   76 (175)
                      ++|++++|.+++.+|..+..+++|+.|++++|++++  .+|..+..+++|++|++++|++++.+|..  ..+++++.+++
T Consensus       327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L  406 (520)
T 2z7x_B          327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM  406 (520)
T ss_dssp             CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred             cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence            478999999998899999999999999999999986  66778899999999999999999866643  45567777777


Q ss_pred             cCccCC
Q 039964           77 AGNELC   82 (175)
Q Consensus        77 ~~N~l~   82 (175)
                      ++|.+.
T Consensus       407 s~N~l~  412 (520)
T 2z7x_B          407 SSNILT  412 (520)
T ss_dssp             CSSCCC
T ss_pred             cCCCCC
Confidence            777654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.02  E-value=8.4e-10  Score=88.91  Aligned_cols=82  Identities=16%  Similarity=0.080  Sum_probs=42.3

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~   80 (175)
                      +|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|++|++++|.++..++.. ..+++++.+++++|.
T Consensus        73 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~  152 (390)
T 3o6n_A           73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN  152 (390)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc
Confidence            4555555555444445555555555555555555444444555555555555555555333332 344455555555554


Q ss_pred             CCC
Q 039964           81 LCG   83 (175)
Q Consensus        81 l~~   83 (175)
                      +.+
T Consensus       153 l~~  155 (390)
T 3o6n_A          153 LER  155 (390)
T ss_dssp             CCB
T ss_pred             cCc
Confidence            443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.02  E-value=2.2e-10  Score=101.81  Aligned_cols=83  Identities=14%  Similarity=0.226  Sum_probs=74.3

Q ss_pred             CEEEeecCc-ccc-CCChhhcCCc-------ccceeeccccccCccCch--hhhCCCCCCEEeccCCcCCCCCCCCcccC
Q 039964            1 MWLACVHFS-LTG-QITPKIGQLK-------SLDFLDLSRNQFFGGISS--SLSRLSRLSVMDLSYNNLSGKIPSGTQLQ   69 (175)
Q Consensus         1 ~~L~Ls~N~-l~g-~iP~~~~~l~-------~L~~L~Ls~N~l~g~iP~--~~~~l~~L~~L~ls~N~l~g~iP~~~~~~   69 (175)
                      ++|+|++|. ++| .+|..++.++       +|+.|+|++|.++ .+|.  .++++++|+.|+|++|+++ .+|....++
T Consensus       518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~  595 (876)
T 4ecn_A          518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNV  595 (876)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTS
T ss_pred             CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCC
Confidence            579999998 998 8999888776       9999999999999 8998  8999999999999999999 888667888


Q ss_pred             CCCeeeccCccCCCCC
Q 039964           70 SFNALTYAGNELCGLP   85 (175)
Q Consensus        70 ~l~~l~~~~N~l~~~p   85 (175)
                      +|+.+++++|.+...|
T Consensus       596 ~L~~L~Ls~N~l~~lp  611 (876)
T 4ecn_A          596 KLTDLKLDYNQIEEIP  611 (876)
T ss_dssp             EESEEECCSSCCSCCC
T ss_pred             cceEEECcCCccccch
Confidence            9999999999877555

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.01  E-value=1.8e-10  Score=90.54  Aligned_cols=58  Identities=21%  Similarity=0.228  Sum_probs=30.3

Q ss_pred             EEEeecCccccCCChhhcCC-----cccceeeccccccCccCchhhhCCCCCCEEeccCCcCCC
Q 039964            2 WLACVHFSLTGQITPKIGQL-----KSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSG   60 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l-----~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g   60 (175)
                      +|+|++|.+++. |..++.+     ++|+.|+|++|++++..|..++.+++|++|++++|++.|
T Consensus       125 ~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          125 ILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG  187 (312)
T ss_dssp             EEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred             EEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence            455555555543 5444444     555555555555554444555555555555555555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.01  E-value=8.9e-10  Score=87.00  Aligned_cols=83  Identities=22%  Similarity=0.214  Sum_probs=63.2

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|++|++++|+++ .+|... .++++.+++++|.
T Consensus        57 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~-~~~L~~L~l~~n~  134 (332)
T 2ft3_A           57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL-PSSLVELRIHDNR  134 (332)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSC-CTTCCEEECCSSC
T ss_pred             eEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccc-cccCCEEECCCCc
Confidence            46888888888767778888899999999999998777888888888999998888887 444432 2566666666665


Q ss_pred             CCCCC
Q 039964           81 LCGLP   85 (175)
Q Consensus        81 l~~~p   85 (175)
                      +.+.+
T Consensus       135 i~~~~  139 (332)
T 2ft3_A          135 IRKVP  139 (332)
T ss_dssp             CCCCC
T ss_pred             cCccC
Confidence            55443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.01  E-value=1.1e-09  Score=88.19  Aligned_cols=83  Identities=18%  Similarity=0.171  Sum_probs=71.8

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchh-hhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSS-LSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~   78 (175)
                      ++|+|++|.+++..|..++.+++|+.|+|++|.++ .+|.. +..+++|++|++++|.+++..|.. ..+++++.+++++
T Consensus        96 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  174 (390)
T 3o6n_A           96 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS  174 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS
T ss_pred             CEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC
Confidence            57999999999877888999999999999999999 56655 588999999999999999887764 6778899999999


Q ss_pred             ccCCCC
Q 039964           79 NELCGL   84 (175)
Q Consensus        79 N~l~~~   84 (175)
                      |.+.+.
T Consensus       175 n~l~~~  180 (390)
T 3o6n_A          175 NRLTHV  180 (390)
T ss_dssp             SCCSBC
T ss_pred             CcCCcc
Confidence            977654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.00  E-value=6.2e-10  Score=98.31  Aligned_cols=43  Identities=23%  Similarity=0.298  Sum_probs=17.7

Q ss_pred             hcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCC
Q 039964           18 IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSG   60 (175)
Q Consensus        18 ~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g   60 (175)
                      |.++++|+.|+|++|.+++..|..+.++++|++|+|++|.+++
T Consensus        69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  111 (844)
T 3j0a_A           69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD  111 (844)
T ss_dssp             TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred             hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence            3334444444444444443334444444444444444444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.00  E-value=1.1e-09  Score=94.13  Aligned_cols=83  Identities=19%  Similarity=0.139  Sum_probs=46.0

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCC-CcccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS-GTQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~-~~~~~~l~~l~~~~N~   80 (175)
                      +|+|++|.+++..|..|..+++|+.|||++|.+++..|..++++++|++|++++|++++..+. ...+.+|+.+++++|.
T Consensus        29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~  108 (680)
T 1ziw_A           29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS  108 (680)
T ss_dssp             EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc
Confidence            456666666654444566666666666666666655555555566666666666655544332 2444555555555554


Q ss_pred             CCCC
Q 039964           81 LCGL   84 (175)
Q Consensus        81 l~~~   84 (175)
                      +.+.
T Consensus       109 l~~~  112 (680)
T 1ziw_A          109 IQKI  112 (680)
T ss_dssp             CCCC
T ss_pred             cCcc
Confidence            4443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.99  E-value=1.1e-09  Score=94.15  Aligned_cols=86  Identities=15%  Similarity=0.125  Sum_probs=75.4

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..++++++|+.|+|++|.+++..+..++.+++|++|++++|++++..|.. ..+.+|+.+++++|
T Consensus        52 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  131 (680)
T 1ziw_A           52 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN  131 (680)
T ss_dssp             SEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC
Confidence            57999999999988999999999999999999999544446999999999999999999877765 77889999999999


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+.+.+.
T Consensus       132 ~l~~~~~  138 (680)
T 1ziw_A          132 GLSSTKL  138 (680)
T ss_dssp             CCSCCCC
T ss_pred             cccccCc
Confidence            8877543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.99  E-value=6e-10  Score=91.99  Aligned_cols=82  Identities=20%  Similarity=0.128  Sum_probs=55.5

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..|.++++|+.|+|++|.+++..+..+..+++|++|++++|++++.+|.. ..+.+|+.+++++|
T Consensus        59 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n  138 (477)
T 2id5_A           59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN  138 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred             CEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence            46777777777766777777777777777777777443344667777777777777777666544 45556666666666


Q ss_pred             cCC
Q 039964           80 ELC   82 (175)
Q Consensus        80 ~l~   82 (175)
                      .+.
T Consensus       139 ~l~  141 (477)
T 2id5_A          139 DLV  141 (477)
T ss_dssp             TCC
T ss_pred             ccc
Confidence            544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.99  E-value=2e-10  Score=95.73  Aligned_cols=84  Identities=17%  Similarity=0.169  Sum_probs=63.3

Q ss_pred             CEEEeecCccccCCChhhc-CCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIG-QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~-~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++.+|..+. .+++|+.|+|++|.+++. |. ...+++|+.|+|++|.+++.+|....+++|..+++++|
T Consensus       147 ~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS
T ss_pred             CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC
Confidence            3688999999888888776 688888888888888854 33 34577888888888888876666666777788888888


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+.+.|.
T Consensus       225 ~l~~lp~  231 (487)
T 3oja_A          225 KLVLIEK  231 (487)
T ss_dssp             CCCEECT
T ss_pred             cCcccch
Confidence            7766543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.98  E-value=8.4e-10  Score=93.08  Aligned_cols=82  Identities=23%  Similarity=0.257  Sum_probs=65.6

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCc--cCchhhhCCCCCCEEeccCCcCCCCCCCC--cccCCCCeeec
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFG--GISSSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFNALTY   76 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~L~ls~N~l~g~iP~~--~~~~~l~~l~~   76 (175)
                      ++|++++|.+++.+|..+..+++|+.|+|++|++++  .+|..+..+++|++|++++|++++.+|..  ..+.+++.+++
T Consensus       356 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l  435 (562)
T 3a79_B          356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL  435 (562)
T ss_dssp             CEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred             eEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEEC
Confidence            478999999998899999999999999999999986  34567888999999999999998866653  44556666666


Q ss_pred             cCccCC
Q 039964           77 AGNELC   82 (175)
Q Consensus        77 ~~N~l~   82 (175)
                      ++|.+.
T Consensus       436 ~~n~l~  441 (562)
T 3a79_B          436 SSNMLT  441 (562)
T ss_dssp             CSSCCC
T ss_pred             CCCCCC
Confidence            666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.98  E-value=1.4e-09  Score=85.65  Aligned_cols=81  Identities=22%  Similarity=0.224  Sum_probs=64.6

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|+|++|.+++..+..+.++++|+.|+|++|.+++..|..+..+++|++|++++|+++ .+|.. .+++++.+++++|.
T Consensus        55 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~-~~~~L~~L~l~~n~  132 (330)
T 1xku_A           55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK-MPKTLQELRVHENE  132 (330)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSS-CCTTCCEEECCSSC
T ss_pred             eEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChh-hcccccEEECCCCc
Confidence            47899999999766678999999999999999999777888999999999999999988 45543 22566777777765


Q ss_pred             CCC
Q 039964           81 LCG   83 (175)
Q Consensus        81 l~~   83 (175)
                      +.+
T Consensus       133 l~~  135 (330)
T 1xku_A          133 ITK  135 (330)
T ss_dssp             CCB
T ss_pred             ccc
Confidence            544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.98  E-value=1e-09  Score=91.88  Aligned_cols=80  Identities=25%  Similarity=0.169  Sum_probs=67.6

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCC-CCC-CcccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGK-IPS-GTQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~-iP~-~~~~~~l~~l~~~~   78 (175)
                      ++|+|++|.+++..|..|..+++|+.|||++|.+++..|..++.+++|++|++++|.+++. +|. ...+++++.+++++
T Consensus        53 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~  132 (549)
T 2z81_A           53 QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN  132 (549)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred             cEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCC
Confidence            5799999999988888899999999999999999977777799999999999999999863 343 36777888888888


Q ss_pred             cc
Q 039964           79 NE   80 (175)
Q Consensus        79 N~   80 (175)
                      |.
T Consensus       133 n~  134 (549)
T 2z81_A          133 VE  134 (549)
T ss_dssp             SS
T ss_pred             Cc
Confidence            85

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.96  E-value=4.7e-10  Score=81.01  Aligned_cols=82  Identities=16%  Similarity=0.066  Sum_probs=67.7

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCC---CcccCCCCeeecc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS---GTQLQSFNALTYA   77 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~---~~~~~~l~~l~~~   77 (175)
                      ++|+|++|.+++.  +.+..+++|+.|+|++|.+++..|..+..+++|++|++++|+++. +|.   ...+++++.++++
T Consensus        45 ~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~  121 (176)
T 1a9n_A           45 DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCIL  121 (176)
T ss_dssp             SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECC
T ss_pred             CEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEec
Confidence            4799999999964  678999999999999999995444445899999999999999964 443   3677889999999


Q ss_pred             CccCCCCC
Q 039964           78 GNELCGLP   85 (175)
Q Consensus        78 ~N~l~~~p   85 (175)
                      +|.++..|
T Consensus       122 ~N~i~~~~  129 (176)
T 1a9n_A          122 RNPVTNKK  129 (176)
T ss_dssp             SSGGGGST
T ss_pred             CCCCCCcH
Confidence            99877543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.96  E-value=8.1e-10  Score=83.34  Aligned_cols=85  Identities=14%  Similarity=0.138  Sum_probs=64.8

Q ss_pred             CEEEeecCc-cccCCChhhcCCcccceeeccc-cccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCC---eee
Q 039964            1 MWLACVHFS-LTGQITPKIGQLKSLDFLDLSR-NQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFN---ALT   75 (175)
Q Consensus         1 ~~L~Ls~N~-l~g~iP~~~~~l~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~---~l~   75 (175)
                      ++|++++|. +++..+..|..+++|+.|++++ |.+++..+..+..+++|++|++++|++++ +|....+.+++   .++
T Consensus        58 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~  136 (239)
T 2xwt_C           58 SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILE  136 (239)
T ss_dssp             CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEEE
T ss_pred             cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccccccccccccccEEE
Confidence            478889886 7755555788888999999988 88886555678888889999999888886 56555666666   788


Q ss_pred             ccCc-cCCCCCC
Q 039964           76 YAGN-ELCGLPL   86 (175)
Q Consensus        76 ~~~N-~l~~~p~   86 (175)
                      +++| .+.+.+.
T Consensus       137 l~~N~~l~~i~~  148 (239)
T 2xwt_C          137 ITDNPYMTSIPV  148 (239)
T ss_dssp             EESCTTCCEECT
T ss_pred             CCCCcchhhcCc
Confidence            8888 7765543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.92  E-value=1.9e-09  Score=85.77  Aligned_cols=84  Identities=23%  Similarity=0.144  Sum_probs=68.5

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCC-C-CcccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIP-S-GTQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP-~-~~~~~~l~~l~~~~   78 (175)
                      ++|+|++|.+++..|..+.++++|+.|||++|.+++..+..+..+++|++|++++|++++..+ . ...+++++.+++++
T Consensus        79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~  158 (353)
T 2z80_A           79 QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN  158 (353)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred             CEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCC
Confidence            579999999998778889999999999999999995444458899999999999999986544 2 36778889999988


Q ss_pred             c-cCCCC
Q 039964           79 N-ELCGL   84 (175)
Q Consensus        79 N-~l~~~   84 (175)
                      | .+.+.
T Consensus       159 n~~~~~~  165 (353)
T 2z80_A          159 MDTFTKI  165 (353)
T ss_dssp             SSSCCEE
T ss_pred             Ccccccc
Confidence            8 45543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.90  E-value=3.2e-09  Score=81.59  Aligned_cols=79  Identities=27%  Similarity=0.341  Sum_probs=49.9

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL   81 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l   81 (175)
                      +|+|++|.+++ +| .+..+++|+.|||++|++++ +| .+..+++|+.|++++|++++. +....+++++.+++++|.+
T Consensus       110 ~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          110 RLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             EEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred             EEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence            56666666654 33 46666777777777777764 33 466677777777777777655 4445566677777777765


Q ss_pred             CCCC
Q 039964           82 CGLP   85 (175)
Q Consensus        82 ~~~p   85 (175)
                      .+.|
T Consensus       185 ~~~~  188 (263)
T 1xeu_A          185 VNEP  188 (263)
T ss_dssp             ECCC
T ss_pred             cCCc
Confidence            5443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.89  E-value=2.8e-09  Score=84.34  Aligned_cols=80  Identities=25%  Similarity=0.358  Sum_probs=52.4

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|++++|.+++ + +.+..+++|+.|++++|.+++ +| .+..+++|+.|++++|.+++..|.. ..+++++.+++++|
T Consensus       246 ~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          246 TWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             CEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred             CEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence            356777777764 3 356677777777777777764 33 4666777777777777776666554 45666777777777


Q ss_pred             cCCCC
Q 039964           80 ELCGL   84 (175)
Q Consensus        80 ~l~~~   84 (175)
                      .+.+.
T Consensus       322 ~l~~~  326 (347)
T 4fmz_A          322 HITDI  326 (347)
T ss_dssp             SCCCC
T ss_pred             ccccc
Confidence            66554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.88  E-value=1.3e-09  Score=85.81  Aligned_cols=83  Identities=17%  Similarity=0.149  Sum_probs=56.6

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhh-CCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLS-RLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      +|++++|.+++..|..+..+++|+.|||++|.+++..|..+. .+++|++|++++|.+++. |....+++++.+++++|.
T Consensus       124 ~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~  202 (317)
T 3o53_A          124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNK  202 (317)
T ss_dssp             EEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCc
Confidence            567777777766666777778888888888888766666553 577777777777777654 333346667777777776


Q ss_pred             CCCCC
Q 039964           81 LCGLP   85 (175)
Q Consensus        81 l~~~p   85 (175)
                      +.+.+
T Consensus       203 l~~l~  207 (317)
T 3o53_A          203 LAFMG  207 (317)
T ss_dssp             CCEEC
T ss_pred             CCcch
Confidence            65543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.87  E-value=7e-09  Score=79.72  Aligned_cols=77  Identities=21%  Similarity=0.237  Sum_probs=48.0

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|++++|.++ .+| .+..+++|+.|+|++|++++ +|. +..+++|+.|++++|++++. |.... .+++.+++++|.
T Consensus        44 ~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l-~~~~~-~~L~~L~L~~N~  117 (263)
T 1xeu_A           44 QNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNL-NGIPS-ACLSRLFLDNNE  117 (263)
T ss_dssp             SEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSCC-TTCCC-SSCCEEECCSSC
T ss_pred             cEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCCc-Ccccc-CcccEEEccCCc
Confidence            35777777776 455 56777777777777777774 343 67777777777777777653 22222 445555555554


Q ss_pred             CCC
Q 039964           81 LCG   83 (175)
Q Consensus        81 l~~   83 (175)
                      +.+
T Consensus       118 l~~  120 (263)
T 1xeu_A          118 LRD  120 (263)
T ss_dssp             CSB
T ss_pred             cCC
Confidence            443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.86  E-value=3.9e-09  Score=90.38  Aligned_cols=79  Identities=25%  Similarity=0.268  Sum_probs=46.3

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL   81 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l   81 (175)
                      .|+|++|.+++.  +.+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|++++. |....+++|..+++++|.+
T Consensus       135 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          135 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             EEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEE
T ss_pred             EEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcC
Confidence            455555555532  445566666666666666664433  56666666666666666643 4445566666777777665


Q ss_pred             CCCC
Q 039964           82 CGLP   85 (175)
Q Consensus        82 ~~~p   85 (175)
                      .+.|
T Consensus       210 ~~~p  213 (605)
T 1m9s_A          210 LNKP  213 (605)
T ss_dssp             ECCC
T ss_pred             cCCc
Confidence            5543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.85  E-value=7.1e-09  Score=80.76  Aligned_cols=61  Identities=28%  Similarity=0.392  Sum_probs=23.9

Q ss_pred             hcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964           18 IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL   81 (175)
Q Consensus        18 ~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l   81 (175)
                      +..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..| ...+++++.+++++|.+
T Consensus       130 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          130 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence            33333444444444444321  223344444444444444443332 23333444444444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.85  E-value=7e-09  Score=88.25  Aligned_cols=15  Identities=33%  Similarity=0.324  Sum_probs=6.8

Q ss_pred             CCCCeeeccCccCCC
Q 039964           69 QSFNALTYAGNELCG   83 (175)
Q Consensus        69 ~~l~~l~~~~N~l~~   83 (175)
                      .+|+.+++++|.+..
T Consensus       180 ~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          180 ESLEALDVSTNLLES  194 (571)
T ss_dssp             TTCCEEECCSSCCSS
T ss_pred             CCCCEEECcCCCCCc
Confidence            344444444444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.84  E-value=7.3e-11  Score=86.89  Aligned_cols=78  Identities=28%  Similarity=0.368  Sum_probs=44.2

Q ss_pred             EEeecCccccCCCh------hhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeee
Q 039964            3 LACVHFSLTGQITP------KIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALT   75 (175)
Q Consensus         3 L~Ls~N~l~g~iP~------~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~   75 (175)
                      ++++.|.++|.+|.      .+..+++|+.|+|++|.+++ +| .+..+++|+.|++++|.++ .+|.. ..+++++.++
T Consensus        23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~   99 (198)
T 1ds9_A           23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW   99 (198)
T ss_dssp             TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEE
T ss_pred             cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEE
Confidence            34555556655555      56666666666666666664 55 5566666666666666665 33432 2334555555


Q ss_pred             ccCccCCC
Q 039964           76 YAGNELCG   83 (175)
Q Consensus        76 ~~~N~l~~   83 (175)
                      +++|.+.+
T Consensus       100 L~~N~l~~  107 (198)
T 1ds9_A          100 ISYNQIAS  107 (198)
T ss_dssp             EEEEECCC
T ss_pred             CcCCcCCc
Confidence            55555444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.82  E-value=8.4e-09  Score=88.31  Aligned_cols=80  Identities=26%  Similarity=0.341  Sum_probs=57.1

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|+|++|.+++ + +.+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++.+| ...+++|+.|++++|.
T Consensus       112 ~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          112 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             CEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC
Confidence            356677777664 3 3466777777777777777743  457778888888888888887766 5667788888888887


Q ss_pred             CCCCC
Q 039964           81 LCGLP   85 (175)
Q Consensus        81 l~~~p   85 (175)
                      +.+.+
T Consensus       187 i~~l~  191 (605)
T 1m9s_A          187 ISDLR  191 (605)
T ss_dssp             CCBCG
T ss_pred             CCCCh
Confidence            76653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.82  E-value=5.8e-09  Score=81.25  Aligned_cols=81  Identities=25%  Similarity=0.285  Sum_probs=69.4

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|++++|.+++.  +.+..+++|+.|++++|.+++..|  +..+++|+.|++++|.+++ +|....+++|+.+++++|.
T Consensus       137 ~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEE
T ss_pred             CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCc
Confidence            4799999999864  679999999999999999996544  8999999999999999986 4556778899999999998


Q ss_pred             CCCCCC
Q 039964           81 LCGLPL   86 (175)
Q Consensus        81 l~~~p~   86 (175)
                      +...|.
T Consensus       212 i~~~~~  217 (291)
T 1h6t_A          212 CLNKPI  217 (291)
T ss_dssp             EECCCE
T ss_pred             ccCCcc
Confidence            776543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.81  E-value=1e-08  Score=80.42  Aligned_cols=54  Identities=30%  Similarity=0.413  Sum_probs=23.8

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLS   59 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~   59 (175)
                      +|+|++|.+++ +| .+..+++|+.|++++|.+++ +|. +..+++|++|++++|+++
T Consensus        89 ~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~  142 (308)
T 1h6u_A           89 ELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQIT  142 (308)
T ss_dssp             EEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred             EEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccC
Confidence            44555555442 22 34444444444444444442 222 444444444444444444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.80  E-value=1e-08  Score=80.39  Aligned_cols=54  Identities=30%  Similarity=0.407  Sum_probs=22.5

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLS   59 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~   59 (175)
                      +|+|++|.+++ +|. +..+++|+.|++++|.+++ +|. +..+++|+.|++++|+++
T Consensus       111 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          111 TLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             EEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC
T ss_pred             EEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCC
Confidence            34444444442 222 4444444444444444442 221 334444444444444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.79  E-value=6.7e-09  Score=81.61  Aligned_cols=84  Identities=17%  Similarity=0.194  Sum_probs=67.7

Q ss_pred             CEEEeecCccccCCChhhc-CCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIG-QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~-~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+++..|..+. .+++|+.|+|++|.+++ +|. ...+++|++|++++|++++.+|....+++++.+++++|
T Consensus       147 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N  224 (317)
T 3o53_A          147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN  224 (317)
T ss_dssp             EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS
T ss_pred             CEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC
Confidence            3689999999987777764 78999999999999985 443 34588999999999999977666677788999999999


Q ss_pred             cCCCCCC
Q 039964           80 ELCGLPL   86 (175)
Q Consensus        80 ~l~~~p~   86 (175)
                      .+.+.|.
T Consensus       225 ~l~~l~~  231 (317)
T 3o53_A          225 KLVLIEK  231 (317)
T ss_dssp             CCCEECT
T ss_pred             cccchhh
Confidence            8776543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.79  E-value=1.4e-08  Score=86.39  Aligned_cols=74  Identities=24%  Similarity=0.328  Sum_probs=41.2

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL   81 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l   81 (175)
                      +|+|++|.+++ +|. +..  +|+.|+|++|.+++ +|.   .+++|+.|++++|++++ +|.  .+++|+.+++++|.+
T Consensus       104 ~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L  172 (571)
T 3cvr_A          104 YLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQL  172 (571)
T ss_dssp             EEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCC
T ss_pred             EEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCC
Confidence            45555555553 444 333  55555555555554 444   45566666666666665 443  345666677777766


Q ss_pred             CCCCC
Q 039964           82 CGLPL   86 (175)
Q Consensus        82 ~~~p~   86 (175)
                      .+.|.
T Consensus       173 ~~lp~  177 (571)
T 3cvr_A          173 TFLPE  177 (571)
T ss_dssp             SCCCC
T ss_pred             CCcch
Confidence            66443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.78  E-value=1.5e-08  Score=83.75  Aligned_cols=75  Identities=17%  Similarity=0.247  Sum_probs=41.6

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL   81 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l   81 (175)
                      +|++++|.+++ +| +++.+++|+.|++++|++++ +|..   ..+|++|++++|++++ +|....+++++.+++++|.+
T Consensus       135 ~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l  207 (454)
T 1jl5_A          135 YLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSL  207 (454)
T ss_dssp             EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCC
T ss_pred             EEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-CccccCCCCCCEEECCCCcC
Confidence            55666666664 55 36666666666666666663 4432   2355555555555554 34444455555555555555


Q ss_pred             CC
Q 039964           82 CG   83 (175)
Q Consensus        82 ~~   83 (175)
                      .+
T Consensus       208 ~~  209 (454)
T 1jl5_A          208 KK  209 (454)
T ss_dssp             SS
T ss_pred             Cc
Confidence            44

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.76  E-value=1.1e-08  Score=84.43  Aligned_cols=79  Identities=19%  Similarity=0.238  Sum_probs=40.3

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL   81 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l   81 (175)
                      +|+|++|.+++..|  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++.+| ...+++++.+++++|.+
T Consensus       313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE
T ss_pred             EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc
Confidence            34444444443322  34444555555555555432  235555555555666665555555 34455566666666655


Q ss_pred             CCCC
Q 039964           82 CGLP   85 (175)
Q Consensus        82 ~~~p   85 (175)
                      .+.|
T Consensus       388 ~~~p  391 (466)
T 1o6v_A          388 TNAP  391 (466)
T ss_dssp             ECCC
T ss_pred             cCCc
Confidence            5544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.76  E-value=2.4e-10  Score=84.07  Aligned_cols=80  Identities=20%  Similarity=0.277  Sum_probs=70.6

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|+|++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +|....+++++.+++++|.
T Consensus        51 ~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~  126 (198)
T 1ds9_A           51 KHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             SEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEE
T ss_pred             CEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCEEECCCCc
Confidence            579999999996 88 8999999999999999999 789888888999999999999997 4555667889999999998


Q ss_pred             CCCC
Q 039964           81 LCGL   84 (175)
Q Consensus        81 l~~~   84 (175)
                      +.+.
T Consensus       127 i~~~  130 (198)
T 1ds9_A          127 ITNW  130 (198)
T ss_dssp             CCCH
T ss_pred             CCch
Confidence            7754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.76  E-value=1.4e-08  Score=80.95  Aligned_cols=85  Identities=22%  Similarity=0.221  Sum_probs=61.7

Q ss_pred             CEEEeecCccccCCC-hhhcCCcccceeeccccccCccCch-hhhCCCCCCE-EeccCCcCCCCCCCC-cccCCCCeeec
Q 039964            1 MWLACVHFSLTGQIT-PKIGQLKSLDFLDLSRNQFFGGISS-SLSRLSRLSV-MDLSYNNLSGKIPSG-TQLQSFNALTY   76 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP-~~~~~l~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~-L~ls~N~l~g~iP~~-~~~~~l~~l~~   76 (175)
                      ++|+|++|+++ .|| ..|.++++|+.|||++|.+.+.+|. .+.+++++.. +++++|+++...|.. ..+++|+.+++
T Consensus        33 ~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l  111 (350)
T 4ay9_X           33 IELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI  111 (350)
T ss_dssp             SEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred             CEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence            46888888887 455 4578888888888888887766664 4567777664 556667887766665 56778888888


Q ss_pred             cCccCCCCCC
Q 039964           77 AGNELCGLPL   86 (175)
Q Consensus        77 ~~N~l~~~p~   86 (175)
                      ++|.+.+.+.
T Consensus       112 ~~n~l~~~~~  121 (350)
T 4ay9_X          112 SNTGIKHLPD  121 (350)
T ss_dssp             EEECCSSCCC
T ss_pred             cccccccCCc
Confidence            8887776554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.73  E-value=3.5e-08  Score=81.60  Aligned_cols=76  Identities=26%  Similarity=0.288  Sum_probs=49.0

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL   81 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l   81 (175)
                      +|++++|.+++ +|  +..+++|+.|++++|.+++.   .++.+++|+.|++++|++++ +| ...+++++.+++++|.+
T Consensus       174 ~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          174 TLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             EEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCC
T ss_pred             EEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcC
Confidence            56666666664 44  56666666666666666643   25666777777777777776 44 44556677777777766


Q ss_pred             CCCC
Q 039964           82 CGLP   85 (175)
Q Consensus        82 ~~~p   85 (175)
                      .+.+
T Consensus       246 ~~~~  249 (457)
T 3bz5_A          246 TELD  249 (457)
T ss_dssp             SCCC
T ss_pred             CCcC
Confidence            6654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.73  E-value=1.4e-09  Score=90.00  Aligned_cols=59  Identities=10%  Similarity=-0.010  Sum_probs=30.0

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCC-------------CEEeccCCcCCC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRL-------------SVMDLSYNNLSG   60 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L-------------~~L~ls~N~l~g   60 (175)
                      ++|++++|.+ |.+|++++++++|+.|++++|.++|.+|..++++++|             ++|++++|.+++
T Consensus        14 ~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~   85 (454)
T 1jl5_A           14 QEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS   85 (454)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred             hhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence            4688999999 7999999999999999999999999999988776543             555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.71  E-value=2.9e-08  Score=81.83  Aligned_cols=76  Identities=26%  Similarity=0.374  Sum_probs=33.5

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL   81 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l   81 (175)
                      .|++++|.+++ +|. +..+++|+.|++++|.+++..|  +..+++|+.|++++|++++..| ...+++++.+++++|.+
T Consensus       269 ~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l  343 (466)
T 1o6v_A          269 ELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKV  343 (466)
T ss_dssp             EEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCC
T ss_pred             EEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCcc
Confidence            34444444443 222 4444444444444444443222  4444555555555555554443 22334444444444443


Q ss_pred             C
Q 039964           82 C   82 (175)
Q Consensus        82 ~   82 (175)
                      .
T Consensus       344 ~  344 (466)
T 1o6v_A          344 S  344 (466)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.71  E-value=4.5e-08  Score=80.95  Aligned_cols=77  Identities=27%  Similarity=0.305  Sum_probs=45.6

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|++++|.+++ +| .+..+++|+.|+|++|++++ +|  ++.+++|++|++++|++++. | ...+++++.+++++|.
T Consensus        45 ~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N~  117 (457)
T 3bz5_A           45 TSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTNK  117 (457)
T ss_dssp             CEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSSC
T ss_pred             CEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCCc
Confidence            356777777764 44 46666666666766666664 33  55666666666666666653 2 3344555555555555


Q ss_pred             CCCC
Q 039964           81 LCGL   84 (175)
Q Consensus        81 l~~~   84 (175)
                      +.+.
T Consensus       118 l~~l  121 (457)
T 3bz5_A          118 LTKL  121 (457)
T ss_dssp             CSCC
T ss_pred             CCee
Confidence            5443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.69  E-value=3e-09  Score=82.36  Aligned_cols=64  Identities=27%  Similarity=0.459  Sum_probs=50.7

Q ss_pred             cCCcccceeeccccccCc--cCchhhhCCCCCCEEeccCCcCCCCCCCCcccC--CCCeeeccCccCCC
Q 039964           19 GQLKSLDFLDLSRNQFFG--GISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQ--SFNALTYAGNELCG   83 (175)
Q Consensus        19 ~~l~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~--~l~~l~~~~N~l~~   83 (175)
                      .++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|++++. .+...+.  +|..+++.+|.+|+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCcc
Confidence            457889999999999987  5567778899999999999999875 2223334  78889999998875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.66  E-value=1.6e-08  Score=78.24  Aligned_cols=73  Identities=18%  Similarity=0.247  Sum_probs=58.7

Q ss_pred             CEEEeecCcccc--CCChhhcCCcccceeeccccccCccCchhhhCCC--CCCEEeccCCcCCCCCCCC--------ccc
Q 039964            1 MWLACVHFSLTG--QITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLS--RLSVMDLSYNNLSGKIPSG--------TQL   68 (175)
Q Consensus         1 ~~L~Ls~N~l~g--~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~--~L~~L~ls~N~l~g~iP~~--------~~~   68 (175)
                      +.|+||+|.+++  .+|..+..+++|+.|||++|++++.  ..+..+.  .|++|+|++|.+++.+|..        ..+
T Consensus       173 ~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~  250 (267)
T 3rw6_A          173 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERF  250 (267)
T ss_dssp             CEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHC
T ss_pred             CEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHC
Confidence            579999999998  6778888999999999999999964  3345555  9999999999999988742        245


Q ss_pred             CCCCeee
Q 039964           69 QSFNALT   75 (175)
Q Consensus        69 ~~l~~l~   75 (175)
                      ++|..++
T Consensus       251 P~L~~LD  257 (267)
T 3rw6_A          251 PKLLRLD  257 (267)
T ss_dssp             TTCCEES
T ss_pred             cccCeEC
Confidence            5666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.65  E-value=3.8e-09  Score=85.01  Aligned_cols=84  Identities=15%  Similarity=0.190  Sum_probs=57.1

Q ss_pred             CEEEeecCccc----cCCChhhcCCcccceeeccccccCcc----CchhhhC--CCCCCEEeccCCcCCC----CCCCC-
Q 039964            1 MWLACVHFSLT----GQITPKIGQLKSLDFLDLSRNQFFGG----ISSSLSR--LSRLSVMDLSYNNLSG----KIPSG-   65 (175)
Q Consensus         1 ~~L~Ls~N~l~----g~iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~--l~~L~~L~ls~N~l~g----~iP~~-   65 (175)
                      ++|+|++|.++    +.+|..+..+++|+.|+|++|.+++.    +|..+..  +++|+.|+|++|.+++    .+|.. 
T Consensus       219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l  298 (386)
T 2ca6_A          219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  298 (386)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence            35777777775    55677777777777777777777754    4555533  7777777777777776    35543 


Q ss_pred             -cccCCCCeeeccCccCCCC
Q 039964           66 -TQLQSFNALTYAGNELCGL   84 (175)
Q Consensus        66 -~~~~~l~~l~~~~N~l~~~   84 (175)
                       ..++++..+++++|.+.+.
T Consensus       299 ~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          299 DEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HHHCTTCCEEECTTSBSCTT
T ss_pred             HhcCCCceEEEccCCcCCcc
Confidence             2357777788877776654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.64  E-value=3.3e-08  Score=78.13  Aligned_cols=79  Identities=23%  Similarity=0.374  Sum_probs=62.6

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|++++|.+++ +|. +..+++|+.|++++|.+++ + +.+..+++|+.|++++|++++. |....+++++.+++++|.
T Consensus       224 ~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          224 NSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             CEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC
T ss_pred             CEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCc
Confidence            468889998884 444 8888999999999998884 4 4578888999999999988864 555677888889998887


Q ss_pred             CCCC
Q 039964           81 LCGL   84 (175)
Q Consensus        81 l~~~   84 (175)
                      +.+.
T Consensus       299 l~~~  302 (347)
T 4fmz_A          299 LGNE  302 (347)
T ss_dssp             CCGG
T ss_pred             CCCc
Confidence            6543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.62  E-value=1.2e-08  Score=81.67  Aligned_cols=81  Identities=22%  Similarity=0.156  Sum_probs=39.0

Q ss_pred             EEEeecCccccCCC----hhhcCCc-ccceeeccccccCccCchhhhCC-----CCCCEEeccCCcCCCCCCCC-----c
Q 039964            2 WLACVHFSLTGQIT----PKIGQLK-SLDFLDLSRNQFFGGISSSLSRL-----SRLSVMDLSYNNLSGKIPSG-----T   66 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP----~~~~~l~-~L~~L~Ls~N~l~g~iP~~~~~l-----~~L~~L~ls~N~l~g~iP~~-----~   66 (175)
                      +|+|++|.+++..+    ..+..++ +|+.|+|++|.+++..+..+..+     ++|++|++++|.+++..+..     .
T Consensus        26 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~  105 (362)
T 3goz_A           26 SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA  105 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred             EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHH
Confidence            45555555554333    4444455 55555555555554444444443     55555555555555443331     1


Q ss_pred             cc-CCCCeeeccCccCC
Q 039964           67 QL-QSFNALTYAGNELC   82 (175)
Q Consensus        67 ~~-~~l~~l~~~~N~l~   82 (175)
                      .. .+++.+++++|.+.
T Consensus       106 ~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A          106 AIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             TSCTTCCEEECCSSCGG
T ss_pred             hCCCCccEEECcCCcCC
Confidence            11 34555555555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.61  E-value=5.6e-09  Score=82.11  Aligned_cols=77  Identities=18%  Similarity=0.161  Sum_probs=32.2

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCcc-CchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGG-ISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      .|++++|.+.+..|. +..+++|+.|+|++|.+++. +|..+..+++|++|++++|.+++..|.. ..+++|+.+++++|
T Consensus        74 ~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B           74 AFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             EEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             EEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            344444444433332 33344444444444444433 4444444444444444444444333322 22334444444444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.56  E-value=2e-08  Score=80.24  Aligned_cols=83  Identities=18%  Similarity=0.164  Sum_probs=70.8

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCc----hhhhCCC-CCCEEeccCCcCCCCCCCC-ccc-----CC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGIS----SSLSRLS-RLSVMDLSYNNLSGKIPSG-TQL-----QS   70 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP----~~~~~l~-~L~~L~ls~N~l~g~iP~~-~~~-----~~   70 (175)
                      ++++++|.++|.+|..+....+|+.|||++|.+++..+    ..+..++ +|++|+|++|.+++..+.. ..+     .+
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            67899999999999988888889999999999997666    6788898 8999999999999776654 232     78


Q ss_pred             CCeeeccCccCCCC
Q 039964           71 FNALTYAGNELCGL   84 (175)
Q Consensus        71 l~~l~~~~N~l~~~   84 (175)
                      ++.+++++|.+.+.
T Consensus        82 L~~L~Ls~n~l~~~   95 (362)
T 3goz_A           82 VTSLNLSGNFLSYK   95 (362)
T ss_dssp             CCEEECCSSCGGGS
T ss_pred             ccEEECcCCcCChH
Confidence            99999999987654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.55  E-value=1e-07  Score=81.88  Aligned_cols=73  Identities=23%  Similarity=0.232  Sum_probs=47.2

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~   80 (175)
                      .|+|++|.+++ +|   ..+++|+.|+|++|.|+ .+|.   .+++|+.|+|++|+++ .+|.. ..++++..+++++|.
T Consensus       225 ~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          225 ELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             EEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred             EEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence            46666666663 55   34466667777777776 4555   5566777777777777 44543 566777777777776


Q ss_pred             CCC
Q 039964           81 LCG   83 (175)
Q Consensus        81 l~~   83 (175)
                      +.+
T Consensus       296 l~~  298 (622)
T 3g06_A          296 LSE  298 (622)
T ss_dssp             CCH
T ss_pred             CCC
Confidence            654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.52  E-value=2.7e-08  Score=78.17  Aligned_cols=83  Identities=14%  Similarity=0.127  Sum_probs=72.0

Q ss_pred             CEEEeecCccccC-CChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCC-cCCCC-CCCC-cccCCCCeeec
Q 039964            1 MWLACVHFSLTGQ-ITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYN-NLSGK-IPSG-TQLQSFNALTY   76 (175)
Q Consensus         1 ~~L~Ls~N~l~g~-iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N-~l~g~-iP~~-~~~~~l~~l~~   76 (175)
                      ++|+|++|.+++. +|..+..+++|+.|+|++|.+++..|..++.+++|++|++++| .+++. +|.. ..+++|+.+++
T Consensus        96 ~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l  175 (336)
T 2ast_B           96 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL  175 (336)
T ss_dssp             CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             CEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence            5799999999876 8889999999999999999999889999999999999999999 67753 4543 56788999999


Q ss_pred             cCc-cCCC
Q 039964           77 AGN-ELCG   83 (175)
Q Consensus        77 ~~N-~l~~   83 (175)
                      ++| .+.+
T Consensus       176 ~~~~~l~~  183 (336)
T 2ast_B          176 SWCFDFTE  183 (336)
T ss_dssp             CCCTTCCH
T ss_pred             CCCCCcCh
Confidence            999 7763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.50  E-value=3.2e-07  Score=78.80  Aligned_cols=15  Identities=20%  Similarity=0.421  Sum_probs=6.8

Q ss_pred             CCCCeeeccCccCCC
Q 039964           69 QSFNALTYAGNELCG   83 (175)
Q Consensus        69 ~~l~~l~~~~N~l~~   83 (175)
                      ++|+.+++++|.+.+
T Consensus       141 ~~L~~L~Ls~N~l~~  155 (622)
T 3g06_A          141 PGLQELSVSDNQLAS  155 (622)
T ss_dssp             TTCCEEECCSSCCSC
T ss_pred             CCCCEEECcCCcCCC
Confidence            344444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.46  E-value=4.7e-08  Score=78.60  Aligned_cols=41  Identities=27%  Similarity=0.216  Sum_probs=22.0

Q ss_pred             cCCcccceeeccccccCc----cCchhhhCCCCCCEEeccCCcCC
Q 039964           19 GQLKSLDFLDLSRNQFFG----GISSSLSRLSRLSVMDLSYNNLS   59 (175)
Q Consensus        19 ~~l~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~L~ls~N~l~   59 (175)
                      ..+++|+.|+|++|.+++    .+|..+..+++|++|+|++|.++
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            345555555555555554    24445555555555555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.36  E-value=5.7e-07  Score=71.50  Aligned_cols=80  Identities=20%  Similarity=0.185  Sum_probs=50.9

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccc-cccCccCch-hhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSR-NQFFGGISS-SLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN   79 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~-N~l~g~iP~-~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N   79 (175)
                      .|+|++|.++ .||.......+|+.|++++ |.++ .+|. .+..+++|+.||+++|+++..++.  .+.++..+...++
T Consensus       158 ~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~  233 (350)
T 4ay9_X          158 ILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARST  233 (350)
T ss_dssp             EEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTC
T ss_pred             hhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccC
Confidence            5777888887 5666666667778888775 4444 6664 467778888888888888744332  3455555555444


Q ss_pred             -cCCCCC
Q 039964           80 -ELCGLP   85 (175)
Q Consensus        80 -~l~~~p   85 (175)
                       .+...|
T Consensus       234 ~~l~~lP  240 (350)
T 4ay9_X          234 YNLKKLP  240 (350)
T ss_dssp             TTCCCCC
T ss_pred             CCcCcCC
Confidence             444433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.30  E-value=7.3e-08  Score=78.80  Aligned_cols=82  Identities=17%  Similarity=0.058  Sum_probs=43.6

Q ss_pred             CEEEeecCccccCCChhhcCC-----cccceeeccccccCcc----CchhhhCCCCCCEEeccCCcCCCCCCCC-c----
Q 039964            1 MWLACVHFSLTGQITPKIGQL-----KSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNLSGKIPSG-T----   66 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l-----~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~----   66 (175)
                      ++|+|++|.+++..+..+...     ++|+.|++++|.+++.    +|..+..+++|++|++++|.+++..+.. .    
T Consensus       287 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  366 (461)
T 1z7x_W          287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG  366 (461)
T ss_dssp             CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc
Confidence            356666666654433333322     4666666666666644    4455555666666666666655433221 0    


Q ss_pred             -ccCCCCeeeccCccCC
Q 039964           67 -QLQSFNALTYAGNELC   82 (175)
Q Consensus        67 -~~~~l~~l~~~~N~l~   82 (175)
                       ..++++.+++++|.+.
T Consensus       367 ~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          367 QPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             STTCCCCEEECTTSCCC
T ss_pred             CCCCceEEEECCCCCCC
Confidence             1335666666666544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.07  E-value=5.3e-07  Score=73.63  Aligned_cols=35  Identities=29%  Similarity=0.312  Sum_probs=18.4

Q ss_pred             EEEeecCcccc----CCChhhcCCcccceeeccccccCc
Q 039964            2 WLACVHFSLTG----QITPKIGQLKSLDFLDLSRNQFFG   36 (175)
Q Consensus         2 ~L~Ls~N~l~g----~iP~~~~~l~~L~~L~Ls~N~l~g   36 (175)
                      +|+|++|.++.    .+|..+..+++|+.|||++|.+++
T Consensus        89 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  127 (461)
T 1z7x_W           89 KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  127 (461)
T ss_dssp             EEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             EEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence            45555555552    345555555555555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.06  E-value=5.4e-07  Score=72.70  Aligned_cols=41  Identities=20%  Similarity=0.304  Sum_probs=18.4

Q ss_pred             cCCcccceeeccccccCcc----CchhhhCCCCCCEEeccCCcCC
Q 039964           19 GQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNLS   59 (175)
Q Consensus        19 ~~l~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l~   59 (175)
                      ..+++|+.|||++|.++..    ++..+...++|++|||++|.++
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            3444455555555544321    2233344444555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.91  E-value=1.9e-05  Score=54.29  Aligned_cols=56  Identities=20%  Similarity=0.163  Sum_probs=43.2

Q ss_pred             EEEeecCccc-cCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCC
Q 039964            2 WLACVHFSLT-GQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLS   59 (175)
Q Consensus         2 ~L~Ls~N~l~-g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~   59 (175)
                      .++.+++.|+ ..+|..+.  .+|+.|||++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5788888886 45776554  57899999999998444446788899999999998664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.83  E-value=2.4e-06  Score=68.87  Aligned_cols=81  Identities=16%  Similarity=0.093  Sum_probs=51.4

Q ss_pred             EEEeecCccccCCChhh-----cCCcccceeeccccccCc----cCchhhhCCCCCCEEeccCCcCCCCC----CCC-cc
Q 039964            2 WLACVHFSLTGQITPKI-----GQLKSLDFLDLSRNQFFG----GISSSLSRLSRLSVMDLSYNNLSGKI----PSG-TQ   67 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~-----~~l~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~L~ls~N~l~g~i----P~~-~~   67 (175)
                      .|+|++|.++..-...+     ...++|+.|+|++|.++.    .++..+..+++|++|||++|.++..-    +.. ..
T Consensus       130 ~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~  209 (372)
T 3un9_A          130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR  209 (372)
T ss_dssp             EEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG
T ss_pred             HhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc
Confidence            57777777764333333     235678888888888763    24455577888888888888876321    111 23


Q ss_pred             cCCCCeeeccCccCC
Q 039964           68 LQSFNALTYAGNELC   82 (175)
Q Consensus        68 ~~~l~~l~~~~N~l~   82 (175)
                      ..+++.+++++|.+.
T Consensus       210 ~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          210 NRQLQELNVAYNGAG  224 (372)
T ss_dssp             CSCCCEEECCSSCCC
T ss_pred             CCCcCeEECCCCCCC
Confidence            346777777777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.81  E-value=2.9e-06  Score=71.34  Aligned_cols=82  Identities=20%  Similarity=0.118  Sum_probs=50.2

Q ss_pred             EEEeecC--ccccCCChhhcC-CcccceeeccccccCc-cCchhhhCCCCCCEEeccCCcCCCC-CCCC-cccCCCCeee
Q 039964            2 WLACVHF--SLTGQITPKIGQ-LKSLDFLDLSRNQFFG-GISSSLSRLSRLSVMDLSYNNLSGK-IPSG-TQLQSFNALT   75 (175)
Q Consensus         2 ~L~Ls~N--~l~g~iP~~~~~-l~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~L~ls~N~l~g~-iP~~-~~~~~l~~l~   75 (175)
                      .|+|+.+  .+++..+..+.. +++|+.|++++|.+++ .++..+..+++|+.|++++|.+++. ++.. ..+++++.++
T Consensus       440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  519 (592)
T 3ogk_B          440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW  519 (592)
T ss_dssp             EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred             EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence            4555432  244443433333 6677777777777765 3455556778888888888877543 2222 3567788888


Q ss_pred             ccCccCCC
Q 039964           76 YAGNELCG   83 (175)
Q Consensus        76 ~~~N~l~~   83 (175)
                      +++|.+.+
T Consensus       520 ls~n~it~  527 (592)
T 3ogk_B          520 VQGYRASM  527 (592)
T ss_dssp             EESCBCCT
T ss_pred             CcCCcCCH
Confidence            88887654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.62  E-value=2.6e-05  Score=65.52  Aligned_cols=61  Identities=13%  Similarity=0.107  Sum_probs=51.3

Q ss_pred             CEEEeecCcccc-CCChhhcCCcccceeeccccccCcc-CchhhhCCCCCCEEeccCCcCCCC
Q 039964            1 MWLACVHFSLTG-QITPKIGQLKSLDFLDLSRNQFFGG-ISSSLSRLSRLSVMDLSYNNLSGK   61 (175)
Q Consensus         1 ~~L~Ls~N~l~g-~iP~~~~~l~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~L~ls~N~l~g~   61 (175)
                      ++|+|++|.+++ .++..+..+++|+.|++++|.+++. ++.....+++|+.|++++|+++..
T Consensus       466 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            579999999986 3566678899999999999999765 455567899999999999998765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.57  E-value=1.7e-05  Score=57.50  Aligned_cols=81  Identities=10%  Similarity=0.074  Sum_probs=46.2

Q ss_pred             CEEEeecC-ccccC----CChhhcCCcccceeeccccccCcc----CchhhhCCCCCCEEeccCCcCCCC----CCCC-c
Q 039964            1 MWLACVHF-SLTGQ----ITPKIGQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNLSGK----IPSG-T   66 (175)
Q Consensus         1 ~~L~Ls~N-~l~g~----iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l~g~----iP~~-~   66 (175)
                      ++|+|++| .+...    +...+...++|+.|||++|.+...    +...+...++|++|+|++|.+...    +... .
T Consensus        39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~  118 (185)
T 1io0_A           39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ  118 (185)
T ss_dssp             CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG
T ss_pred             CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH
Confidence            35777777 66532    334455566777777777777532    333455556777777777776532    1111 2


Q ss_pred             ccCCCCeeec--cCccC
Q 039964           67 QLQSFNALTY--AGNEL   81 (175)
Q Consensus        67 ~~~~l~~l~~--~~N~l   81 (175)
                      ...+++.+++  ++|.+
T Consensus       119 ~n~~L~~L~L~~~~N~i  135 (185)
T 1io0_A          119 SNTSLIELRIDNQSQPL  135 (185)
T ss_dssp             GCSSCCEEECCCCSSCC
T ss_pred             hCCCceEEEecCCCCCC
Confidence            2345666776  55544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.54  E-value=1e-05  Score=58.81  Aligned_cols=81  Identities=11%  Similarity=0.110  Sum_probs=59.3

Q ss_pred             CEEEeecCccccC----CChhhcCCcccceeeccccccCcc----CchhhhCCCCCCEEec--cCCcCCCCCCC----C-
Q 039964            1 MWLACVHFSLTGQ----ITPKIGQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDL--SYNNLSGKIPS----G-   65 (175)
Q Consensus         1 ~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~l--s~N~l~g~iP~----~-   65 (175)
                      ++|+|++|.+...    +...+...++|+.|||++|.++..    +...+...++|++|+|  ++|.+...--.    . 
T Consensus        68 ~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L  147 (185)
T 1io0_A           68 KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML  147 (185)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH
T ss_pred             CEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH
Confidence            4799999998642    344556668999999999999853    4566788899999999  88988643111    1 


Q ss_pred             cccCCCCeeeccCccC
Q 039964           66 TQLQSFNALTYAGNEL   81 (175)
Q Consensus        66 ~~~~~l~~l~~~~N~l   81 (175)
                      ...++++.+++++|.+
T Consensus       148 ~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          148 EKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHCSSCCEEECCCSSH
T ss_pred             HhCCCcCEEeccCCCC
Confidence            2235788888887754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.54  E-value=9e-06  Score=68.31  Aligned_cols=61  Identities=11%  Similarity=0.094  Sum_probs=36.6

Q ss_pred             CcccceeeccccccCccCchhh-hCCCCCCEEeccCCcCCCCCCC-C-cccCCCCeeeccCccC
Q 039964           21 LKSLDFLDLSRNQFFGGISSSL-SRLSRLSVMDLSYNNLSGKIPS-G-TQLQSFNALTYAGNEL   81 (175)
Q Consensus        21 l~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~L~ls~N~l~g~iP~-~-~~~~~l~~l~~~~N~l   81 (175)
                      +++|+.|+|++|.+++..+..+ ..+++|+.|++++|.+++..+. . ..+++|+.+++++|.+
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            5667777777777665444443 4567777777777776433222 1 3356677777777644

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.42  E-value=0.00018  Score=56.37  Aligned_cols=82  Identities=16%  Similarity=0.091  Sum_probs=51.0

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCC-EEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLS-VMDLSYNNLSGKIPSG-TQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~-~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~   78 (175)
                      +.|+|++|+++..-+..|.++.+|+.++|++| ++..-+..|.++++|+ .+++++ .++...+.. ....+|+.+++.+
T Consensus       229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~  306 (329)
T 3sb4_A          229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATG  306 (329)
T ss_dssp             CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECS
T ss_pred             eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCC
Confidence            35777777777333345777777888888776 6533334577777777 777776 455333332 4456677777766


Q ss_pred             ccCCCC
Q 039964           79 NELCGL   84 (175)
Q Consensus        79 N~l~~~   84 (175)
                      |.+...
T Consensus       307 n~i~~I  312 (329)
T 3sb4_A          307 DKITTL  312 (329)
T ss_dssp             SCCCEE
T ss_pred             CccCcc
Confidence            665543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.34  E-value=5.9e-05  Score=63.31  Aligned_cols=79  Identities=15%  Similarity=0.114  Sum_probs=45.9

Q ss_pred             CEEEeecCccccCCChhhc-CCcccceeecccc-ccCcc-CchhhhCCCCCCEEeccCCcCCCCCCCC-----cccCCCC
Q 039964            1 MWLACVHFSLTGQITPKIG-QLKSLDFLDLSRN-QFFGG-ISSSLSRLSRLSVMDLSYNNLSGKIPSG-----TQLQSFN   72 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~-~l~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~~L~ls~N~l~g~iP~~-----~~~~~l~   72 (175)
                      ++|+|++|.+++..+..+. .+++|+.|+|++| .++.. ++....++++|++|++++|.+++..+..     ..+++|+
T Consensus       108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~  187 (594)
T 2p1m_B          108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV  187 (594)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred             CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence            3577777777666555554 5677777777776 44322 3444446777777777777655433221     1334555


Q ss_pred             eeeccCc
Q 039964           73 ALTYAGN   79 (175)
Q Consensus        73 ~l~~~~N   79 (175)
                      .+++++|
T Consensus       188 ~L~l~~~  194 (594)
T 2p1m_B          188 SLNISCL  194 (594)
T ss_dssp             EEECTTC
T ss_pred             EEEeccc
Confidence            5555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.94  E-value=0.00019  Score=57.63  Aligned_cols=63  Identities=16%  Similarity=0.237  Sum_probs=49.1

Q ss_pred             CCcccceeeccccccCccCchhhh---CCCCCCEEeccCCcCCCC----CCCC-cccCCCCeeeccCccCC
Q 039964           20 QLKSLDFLDLSRNQFFGGISSSLS---RLSRLSVMDLSYNNLSGK----IPSG-TQLQSFNALTYAGNELC   82 (175)
Q Consensus        20 ~l~~L~~L~Ls~N~l~g~iP~~~~---~l~~L~~L~ls~N~l~g~----iP~~-~~~~~l~~l~~~~N~l~   82 (175)
                      .+++|+.|+|++|.+.+..+..+.   .+++|++|||++|.+.+.    ++.. ..+++|+.++++.|.+.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            478999999999998765554444   578999999999998863    3443 45678999999888664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.79  E-value=0.0024  Score=43.58  Aligned_cols=55  Identities=16%  Similarity=0.233  Sum_probs=42.9

Q ss_pred             ceeeccccccC-ccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCccC
Q 039964           25 DFLDLSRNQFF-GGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNEL   81 (175)
Q Consensus        25 ~~L~Ls~N~l~-g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~l   81 (175)
                      ..+|.+++.|+ ..+|..+  -++|+.|+|++|+|+...+.. ..+.+++.+++.+|.+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            47899999996 4677542  246999999999999665554 5678899999999944

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.66  E-value=0.00056  Score=49.46  Aligned_cols=31  Identities=6%  Similarity=0.045  Sum_probs=14.4

Q ss_pred             EEEeecCccccCCChhhcCCcccceeecccc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRN   32 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N   32 (175)
                      .||||++.++..=-..+..+++|+.|+|+++
T Consensus        65 ~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           65 AIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             EEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             EEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            3555555444322233444555555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.56  E-value=0.0011  Score=53.21  Aligned_cols=83  Identities=13%  Similarity=0.131  Sum_probs=54.7

Q ss_pred             CEEEeecCccccCCChhhc--CCcccceeeccc--cccCcc-----Cchhh--hCCCCCCEEeccCCcCCCCCCC----C
Q 039964            1 MWLACVHFSLTGQITPKIG--QLKSLDFLDLSR--NQFFGG-----ISSSL--SRLSRLSVMDLSYNNLSGKIPS----G   65 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~--~l~~L~~L~Ls~--N~l~g~-----iP~~~--~~l~~L~~L~ls~N~l~g~iP~----~   65 (175)
                      +.|+|+.+.++......+.  .+++|+.|+|+.  |...|.     +...+  ..+++|+.|+|.+|.+....+.    .
T Consensus       196 ~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a  275 (362)
T 2ra8_A          196 KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES  275 (362)
T ss_dssp             SEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC
T ss_pred             cEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC
Confidence            4688888877644334444  789999999864  332222     11122  3578999999999988643321    1


Q ss_pred             cccCCCCeeeccCccCCC
Q 039964           66 TQLQSFNALTYAGNELCG   83 (175)
Q Consensus        66 ~~~~~l~~l~~~~N~l~~   83 (175)
                      ..+++|+.++++.|.+.+
T Consensus       276 ~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          276 DILPQLETMDISAGVLTD  293 (362)
T ss_dssp             SSGGGCSEEECCSSCCBH
T ss_pred             ccCCCCCEEECCCCCCCh
Confidence            246789999999887654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.47  E-value=0.0039  Score=48.69  Aligned_cols=73  Identities=8%  Similarity=-0.094  Sum_probs=54.5

Q ss_pred             CEEEeecCccccCCChhhcCCcccc-eeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeee
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLD-FLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALT   75 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~-~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~   75 (175)
                      +.|+|++| ++..-+..|.++.+|+ .+++.+ +++..-+..|.++++|+.++++.|+++...+.. ....+|+.+.
T Consensus       253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            46888888 7644446789999999 999999 777344578999999999999999998555443 4444555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.13  E-value=0.024  Score=41.57  Aligned_cols=42  Identities=17%  Similarity=0.260  Sum_probs=20.3

Q ss_pred             hcCCcccceeeccccccCc----cCchhhhCCCCCCEEeccCCcCC
Q 039964           18 IGQLKSLDFLDLSRNQFFG----GISSSLSRLSRLSVMDLSYNNLS   59 (175)
Q Consensus        18 ~~~l~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~L~ls~N~l~   59 (175)
                      +..-.+|+.|+|++|.+..    .+-..+..-++|++|+|++|++.
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3334455555555555542    12222333455555555555554

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=93.99  E-value=0.031  Score=30.67  Aligned_cols=27  Identities=7%  Similarity=-0.025  Sum_probs=13.1

Q ss_pred             eeeeehhHHHHHHHHHHHHHhhcccch
Q 039964          118 FYVSLILGFFVGFWGFCGTLLVKSSWR  144 (175)
Q Consensus       118 ~~~~~~~g~~~~~~~~~~~~~~~~~~r  144 (175)
                      ++.+++.|+++.++++++.+++.++++
T Consensus        13 IA~gVVgGv~~~~ii~~~~~~~~RRr~   39 (44)
T 2ks1_B           13 IATGMVGALLLLLVVALGIGLFMRRRH   39 (44)
T ss_dssp             STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence            444455555555544444444444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.48  E-value=0.24  Score=39.84  Aligned_cols=75  Identities=12%  Similarity=0.039  Sum_probs=40.6

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccC-----ccCchhhhCCCCCCEEeccCCcCCCCCCCC--cccCCCCee
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFF-----GGISSSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFNAL   74 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~-----g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~--~~~~~l~~l   74 (175)
                      .+.+ .|.++..-+..|.++++|+.+++.+|.+.     -.-+..|..+++|+.+++.+ .++ .++..  ....+|+.+
T Consensus       252 ~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l  328 (401)
T 4fdw_A          252 TVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQL  328 (401)
T ss_dssp             EEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEE
T ss_pred             EEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEE
Confidence            3445 33344223456777777777777776654     12234566777777777763 344 33332  333455555


Q ss_pred             eccCc
Q 039964           75 TYAGN   79 (175)
Q Consensus        75 ~~~~N   79 (175)
                      .+..|
T Consensus       329 ~lp~~  333 (401)
T 4fdw_A          329 TIPAN  333 (401)
T ss_dssp             EECTT
T ss_pred             EECcc
Confidence            55443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.34  E-value=0.17  Score=40.81  Aligned_cols=38  Identities=16%  Similarity=0.061  Sum_probs=20.8

Q ss_pred             hhhcCCcccceeeccccccCccCchhhhCCCCCCEEecc
Q 039964           16 PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLS   54 (175)
Q Consensus        16 ~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls   54 (175)
                      ..|.++.+|+.++|++|.++ .||......+.|+.+.+.
T Consensus       174 ~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp  211 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLP  211 (401)
T ss_dssp             STTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECC
T ss_pred             HHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeC
Confidence            45666666777777666665 444332234455555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.62  E-value=0.042  Score=40.23  Aligned_cols=56  Identities=11%  Similarity=0.063  Sum_probs=40.3

Q ss_pred             CEEEeecCccccC----CChhhcCCcccceeeccccccCcc----CchhhhCCCCCCEEeccCC
Q 039964            1 MWLACVHFSLTGQ----ITPKIGQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYN   56 (175)
Q Consensus         1 ~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N   56 (175)
                      +.|+|++|.+...    |-+.+..-++|+.|+|++|.+...    +-..+..-++|++|+|++|
T Consensus        73 ~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           73 EKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             CEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            4689999988632    233444557899999999999743    3334556677999999865

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=91.17  E-value=0.086  Score=28.83  Aligned_cols=27  Identities=11%  Similarity=-0.075  Sum_probs=12.8

Q ss_pred             eeeeehhHHHHHHHHHHHHHhhcccch
Q 039964          118 FYVSLILGFFVGFWGFCGTLLVKSSWR  144 (175)
Q Consensus       118 ~~~~~~~g~~~~~~~~~~~~~~~~~~r  144 (175)
                      ++.+++.|+++.++++.+.+++.|+++
T Consensus        12 IA~gVVgGv~~v~ii~~~~~~~~RRRr   38 (44)
T 2l2t_A           12 IAAGVIGGLFILVIVGLTFAVYVRRKS   38 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence            344444445554444444444444443

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=90.63  E-value=0.078  Score=28.09  Aligned_cols=24  Identities=29%  Similarity=0.431  Sum_probs=15.1

Q ss_pred             ceeeeeehhHHHHHHHHHHHHHhh
Q 039964          116 LGFYVSLILGFFVGFWGFCGTLLV  139 (175)
Q Consensus       116 ~~~~~~~~~g~~~~~~~~~~~~~~  139 (175)
                      ...++++++|.++++.++.+..++
T Consensus        10 ~GaIAGiVvG~v~gv~li~~l~~~   33 (38)
T 2k1k_A           10 GGEIVAVIFGLLLGAALLLGILVF   33 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceeeeehHHHHHHHHHHHHHHH
Confidence            345677788877766655554444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=90.63  E-value=0.23  Score=35.62  Aligned_cols=61  Identities=10%  Similarity=0.087  Sum_probs=41.5

Q ss_pred             cccceeeccccccCccCchhhhCCCCCCEEeccCCc-CCCCCCCC-ccc----CCCCeeeccCc-cCC
Q 039964           22 KSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNN-LSGKIPSG-TQL----QSFNALTYAGN-ELC   82 (175)
Q Consensus        22 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~-l~g~iP~~-~~~----~~l~~l~~~~N-~l~   82 (175)
                      -.|+.||++++.++..=-..+..+++|++|+|+++. ++..--.. ...    ++|+.++++++ .++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            469999999999875433457889999999999985 43210000 111    25888888886 454

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=86.48  E-value=0.14  Score=27.94  Aligned_cols=13  Identities=15%  Similarity=0.352  Sum_probs=6.7

Q ss_pred             eeeeehhHHHHHH
Q 039964          118 FYVSLILGFFVGF  130 (175)
Q Consensus       118 ~~~~~~~g~~~~~  130 (175)
                      .+++.++|+++.+
T Consensus        13 ~Ia~~vVGvll~v   25 (44)
T 2jwa_A           13 SIISAVVGILLVV   25 (44)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHH
Confidence            4556666644333

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=82.13  E-value=2.8  Score=33.04  Aligned_cols=36  Identities=22%  Similarity=0.205  Sum_probs=18.4

Q ss_pred             hcCCcccceeeccccccCccC-chhhhCCCCCCEEeccC
Q 039964           18 IGQLKSLDFLDLSRNQFFGGI-SSSLSRLSRLSVMDLSY   55 (175)
Q Consensus        18 ~~~l~~L~~L~Ls~N~l~g~i-P~~~~~l~~L~~L~ls~   55 (175)
                      +..+.+|+.+.+..+ ++ .| ...|.++++|+.+++.+
T Consensus       293 F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~  329 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPY  329 (394)
T ss_dssp             TTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCT
T ss_pred             ccccccccccccccc-cc-eechhhhcCCCCCCEEEeCC
Confidence            445555666655443 33 23 23455566666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	175
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.7 bits (174), Expect = 6e-16
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 1   MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSG 60
                +  +       K+G  K+L+ LDL  N+ +G +   L++L  L  +++S+NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 61  KIPSGTQLQSFNALTYAGN-ELCGLPLP 87
           +IP G  LQ F+   YA N  LCG PLP
Sbjct: 283 EIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 16  PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFN 72
             +  L  L  L  + N+      SSL+ L+ ++ +   +N +S   P    T++    
Sbjct: 323 SPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLG 379

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 7e-05
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 1   MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSG 60
                       +    I  LK+L +L L  N       S +S L++L  +  + N +S 
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD 343

Query: 61  KIPSGTQLQSFNALTYAGNELCGLP 85
            + S   L + N L+   N++  L 
Sbjct: 344 -VSSLANLTNINWLSAGHNQISDLT 367

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 16  PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYN 56
             +  L ++++L    NQ      + L+ L+R++ + L+  
Sbjct: 345 SSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 9  SLTGQITPKIGQLKSLDFLDLSRNQFFGGISS--SLSRLSRLSVMDLSYNNLSGKIP 63
          ++T  ++     L  +  L   R     GI S   +  L+ L+ ++ S N L+   P
Sbjct: 33 NVTDTVSQT--DLDQVTTLQADRL----GIKSIDGVEYLNNLTQINFSNNQLTDITP 83

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 1   MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSG 60
                   + + +I        SL+ L++S N+    + +   RL RL     S+N+L+ 
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPPRLERL---IASFNHLAE 318

Query: 61  KIPSGTQLQSFNALTYAGNELCGLP 85
                  L+    L    N L   P
Sbjct: 319 VPELPQNLKQ---LHVEYNPLREFP 340

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 6e-04
 Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 1/74 (1%)

Query: 22  KSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE 80
                LDL  N+           L  L  + L  N +S   P     L     L  + N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 81  LCGLPLPNKCPTEE 94
           L  LP       +E
Sbjct: 91  LKELPEKMPKTLQE 104

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.001
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 4/51 (7%)

Query: 18 IGQLKSLDFLDLSRNQF----FGGISSSLSRLSRLSVMDLSYNNLSGKIPS 64
          +  L+    + L            ISS+L     L+ ++L  N L      
Sbjct: 23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH 73

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (77), Expect = 0.004
 Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 1   MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSG 60
                 + +L                LD+SR +     S  L  L +L     S  NL  
Sbjct: 180 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA--RSTYNLK- 236

Query: 61  KIPS 64
           K+P+
Sbjct: 237 KLPT 240

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.35
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.32
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.31
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.12
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.04
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.01
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.97
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.95
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.93
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.86
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.57
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.57
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.56
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.52
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.5
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.48
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.47
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.47
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.41
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.35
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.05
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.0
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.56
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.51
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.09
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.05
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.94
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.23
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.7
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	91.34
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	81.41

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.56  E-value=9.3e-16  Score=118.80  Aligned_cols=88  Identities=40%  Similarity=0.697  Sum_probs=80.0

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc-
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN-   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N-   79 (175)
                      +.|++++|.+++.+| +++.+++|+.|||++|+++|.+|..++++++|++|||++|+|+|.+|....+++|+.+++.+| 
T Consensus       224 ~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         224 QKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             ccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence            368899999998765 688899999999999999999999999999999999999999999999888899999999999 


Q ss_pred             cCCCCCCCCCC
Q 039964           80 ELCGLPLPNKC   90 (175)
Q Consensus        80 ~l~~~p~~~~c   90 (175)
                      .+||.|.+ .|
T Consensus       303 ~l~g~plp-~c  312 (313)
T d1ogqa_         303 CLCGSPLP-AC  312 (313)
T ss_dssp             EEESTTSS-CC
T ss_pred             cccCCCCC-CC
Confidence            69998764 66

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=3.2e-13  Score=91.46  Aligned_cols=81  Identities=27%  Similarity=0.318  Sum_probs=70.3

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      |+|+|++|+++ .+| .+..++.|++||+++|.++ .+|+.++.+++|+.|++++|+++. +|....+++++.+++++|.
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cCccccccccCeEECCCCc
Confidence            68999999998 566 4899999999999999998 788889999999999999999985 4666788899999999998


Q ss_pred             CCCCC
Q 039964           81 LCGLP   85 (175)
Q Consensus        81 l~~~p   85 (175)
                      +...+
T Consensus        77 i~~~~   81 (124)
T d1dcea3          77 LQQSA   81 (124)
T ss_dssp             CCSSS
T ss_pred             cCCCC
Confidence            87654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=1.7e-12  Score=87.76  Aligned_cols=81  Identities=25%  Similarity=0.360  Sum_probs=70.2

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCC--CCcccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIP--SGTQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP--~~~~~~~l~~l~~~~   78 (175)
                      ++|++++|.++ .+|+.++.+++|+.|++++|.++ .+| .+..+++|++|++++|+++....  ....++++..+++++
T Consensus        23 ~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          23 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             CEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCC
Confidence            57999999998 78999999999999999999999 566 48999999999999999985543  226678899999999


Q ss_pred             ccCCCC
Q 039964           79 NELCGL   84 (175)
Q Consensus        79 N~l~~~   84 (175)
                      |.++..
T Consensus       100 N~i~~~  105 (124)
T d1dcea3         100 NSLCQE  105 (124)
T ss_dssp             SGGGGS
T ss_pred             CcCCcC
Confidence            988754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=1.6e-12  Score=93.99  Aligned_cols=87  Identities=20%  Similarity=0.150  Sum_probs=74.2

Q ss_pred             CEEEeecCccccCC-ChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQI-TPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~i-P~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~   78 (175)
                      ++|+|++|.+++.+ +..|..+++|+.|+|++|.+.+..+..+..+++|++|+|++|++++..|.. ..+++|+.+++++
T Consensus        32 ~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~  111 (192)
T d1w8aa_          32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred             CEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCC
Confidence            57999999998755 456788999999999999999888888999999999999999999777765 6788899999999


Q ss_pred             ccCCCCCCC
Q 039964           79 NELCGLPLP   87 (175)
Q Consensus        79 N~l~~~p~~   87 (175)
                      |.+.+.+..
T Consensus       112 N~l~~i~~~  120 (192)
T d1w8aa_         112 NQISCVMPG  120 (192)
T ss_dssp             SCCCEECTT
T ss_pred             ccccccCHH
Confidence            988876543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.31  E-value=7.1e-13  Score=102.23  Aligned_cols=80  Identities=26%  Similarity=0.460  Sum_probs=68.9

Q ss_pred             EEEeecCcccc--CCChhhcCCcccceeeccc-cccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeecc
Q 039964            2 WLACVHFSLTG--QITPKIGQLKSLDFLDLSR-NQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYA   77 (175)
Q Consensus         2 ~L~Ls~N~l~g--~iP~~~~~l~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~   77 (175)
                      .|+|++|.++|  .+|+++++|++|+.|||++ |+++|.+|.+++++++|++|+|++|++.+.+|.. .....+..++++
T Consensus        54 ~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~  133 (313)
T d1ogqa_          54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS  133 (313)
T ss_dssp             EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred             EEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccc
Confidence            68999999998  5899999999999999986 8999999999999999999999999999887764 556667777777


Q ss_pred             CccC
Q 039964           78 GNEL   81 (175)
Q Consensus        78 ~N~l   81 (175)
                      .|.+
T Consensus       134 ~N~~  137 (313)
T d1ogqa_         134 YNAL  137 (313)
T ss_dssp             SSEE
T ss_pred             cccc
Confidence            7743

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.29  E-value=2.7e-12  Score=92.67  Aligned_cols=82  Identities=22%  Similarity=0.240  Sum_probs=74.3

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|.+.+..+..+..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|.. ..+.+++.+++++|
T Consensus        57 ~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             eeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence            57999999999989999999999999999999999777778999999999999999999888876 67889999999999


Q ss_pred             cCC
Q 039964           80 ELC   82 (175)
Q Consensus        80 ~l~   82 (175)
                      .+.
T Consensus       137 ~~~  139 (192)
T d1w8aa_         137 PFN  139 (192)
T ss_dssp             CBC
T ss_pred             ccc
Confidence            653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.4e-11  Score=83.27  Aligned_cols=81  Identities=22%  Similarity=0.146  Sum_probs=58.9

Q ss_pred             CEEEeecC-ccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc
Q 039964            1 MWLACVHF-SLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N-~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N   79 (175)
                      +.|++++| .++..-+..|..+++|+.|+|++|+|+..-|..|..+++|++|+|++|+++...+......++..+++++|
T Consensus        34 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             CeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccccccCCC
Confidence            35777665 47754446688888888888888888865566788888888888888888855554444446778888888


Q ss_pred             cC
Q 039964           80 EL   81 (175)
Q Consensus        80 ~l   81 (175)
                      .+
T Consensus       114 p~  115 (156)
T d2ifga3         114 PL  115 (156)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.5e-11  Score=85.53  Aligned_cols=81  Identities=20%  Similarity=0.219  Sum_probs=69.3

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|+|++|+++ .||..+..+++|+.|||++|.++ .++ .+..+++|++|++++|+++...+.. ..+++++.+++++|
T Consensus        21 r~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N   97 (162)
T d1a9na_          21 RELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN   97 (162)
T ss_dssp             EEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred             cEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceeccc
Confidence            47999999998 67877788999999999999998 665 4889999999999999999665554 56889999999999


Q ss_pred             cCCCC
Q 039964           80 ELCGL   84 (175)
Q Consensus        80 ~l~~~   84 (175)
                      .+...
T Consensus        98 ~i~~~  102 (162)
T d1a9na_          98 SLVEL  102 (162)
T ss_dssp             CCCCG
T ss_pred             ccccc
Confidence            87654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2e-10  Score=86.57  Aligned_cols=81  Identities=22%  Similarity=0.177  Sum_probs=61.3

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|+|++|.+++..+..|.++++|+.|+|++|+|+ .+|. ++.+++|++|++++|++++..+....+++++.+++++|.
T Consensus        34 ~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~  111 (266)
T d1p9ag_          34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR  111 (266)
T ss_dssp             CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC
T ss_pred             CEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            47888888888654567888888888888888887 5654 567888888888888888766655666777777777765


Q ss_pred             CCC
Q 039964           81 LCG   83 (175)
Q Consensus        81 l~~   83 (175)
                      +.+
T Consensus       112 ~~~  114 (266)
T d1p9ag_         112 LTS  114 (266)
T ss_dssp             CCC
T ss_pred             cce
Confidence            444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.5e-10  Score=87.80  Aligned_cols=85  Identities=21%  Similarity=0.208  Sum_probs=68.0

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      +.+++++|.+++..+..|..+++|+.|++++|++++..|..+..+++|+.+++++|++++..|.. ..+.+++.+++++|
T Consensus       132 ~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N  211 (284)
T d1ozna_         132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (284)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             chhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccc
Confidence            36788888888655667788888888888888888766777888888888888888888877766 66678888888888


Q ss_pred             cCCCCC
Q 039964           80 ELCGLP   85 (175)
Q Consensus        80 ~l~~~p   85 (175)
                      .+.+.+
T Consensus       212 ~i~~~~  217 (284)
T d1ozna_         212 NLSALP  217 (284)
T ss_dssp             CCSCCC
T ss_pred             cccccc
Confidence            777654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.5e-10  Score=80.27  Aligned_cols=83  Identities=16%  Similarity=0.061  Sum_probs=67.0

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCC--CCcccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIP--SGTQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP--~~~~~~~l~~l~~~~   78 (175)
                      ++||||+|.++ .++ .+..+++|+.|++++|+++...+..+..+++|+.|++++|+++....  ....++++..+++++
T Consensus        44 ~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~  121 (162)
T d1a9na_          44 DAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR  121 (162)
T ss_dssp             SEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred             CEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCC
Confidence            47999999998 564 58899999999999999995444446789999999999999985322  235678899999999


Q ss_pred             ccCCCCC
Q 039964           79 NELCGLP   85 (175)
Q Consensus        79 N~l~~~p   85 (175)
                      |.++..+
T Consensus       122 N~i~~~~  128 (162)
T d1a9na_         122 NPVTNKK  128 (162)
T ss_dssp             SGGGGST
T ss_pred             Ccccccc
Confidence            9876543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1e-09  Score=83.14  Aligned_cols=84  Identities=19%  Similarity=0.144  Sum_probs=61.2

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      ++|++++|.+.+..+..+..+..|+.+++++|++++..+..+..++.|+.|++++|++++..|.. ..++++..+.+.+|
T Consensus       108 ~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhc
Confidence            46778888877666666777778888888888887555566777788888888888887666654 55677777888777


Q ss_pred             cCCCC
Q 039964           80 ELCGL   84 (175)
Q Consensus        80 ~l~~~   84 (175)
                      .+.+.
T Consensus       188 ~l~~i  192 (284)
T d1ozna_         188 RVAHV  192 (284)
T ss_dssp             CCCEE
T ss_pred             ccccc
Confidence            66554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.8e-09  Score=81.18  Aligned_cols=79  Identities=22%  Similarity=0.129  Sum_probs=59.1

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE   80 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~   80 (175)
                      +|++++|.+++..+..+..++.|+.+++++|++++..+..+..+++|++|||++|+++ .+|.. ..+.+++.+++++|.
T Consensus       128 ~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             cccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCC
Confidence            5777777777555566677788888888888888666667788888888888888888 55544 566778888888884


Q ss_pred             C
Q 039964           81 L   81 (175)
Q Consensus        81 l   81 (175)
                      +
T Consensus       207 ~  207 (266)
T d1p9ag_         207 W  207 (266)
T ss_dssp             B
T ss_pred             C
Confidence            3

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.6e-09  Score=75.64  Aligned_cols=85  Identities=16%  Similarity=0.098  Sum_probs=71.6

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccc-cCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQ-FFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN   79 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N   79 (175)
                      .++.+++.+. .+|..+..+++|+.|++++|+ ++..-+..|.++++|+.|++++|+++...|.. ..+++++.+++++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            4678888887 689999999999999998764 88544567999999999999999999877775 67889999999999


Q ss_pred             cCCCCCCC
Q 039964           80 ELCGLPLP   87 (175)
Q Consensus        80 ~l~~~p~~   87 (175)
                      .+...+..
T Consensus        91 ~l~~l~~~   98 (156)
T d2ifga3          91 ALESLSWK   98 (156)
T ss_dssp             CCSCCCST
T ss_pred             CCcccChh
Confidence            98876543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.92  E-value=2.5e-09  Score=81.48  Aligned_cols=87  Identities=17%  Similarity=0.077  Sum_probs=71.6

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      +.|++++|..++.++..+..++.++.|++++|.+++..|..+.++++|++|+|++|+++...+....+++|+.+++++|.
T Consensus       174 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         174 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             CEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCc
Confidence            46888888888888888899999999999999998777788888999999999999998543333667889999999998


Q ss_pred             CCCCCCC
Q 039964           81 LCGLPLP   87 (175)
Q Consensus        81 l~~~p~~   87 (175)
                      +...+..
T Consensus       254 i~~i~~~  260 (305)
T d1xkua_         254 ISAIGSN  260 (305)
T ss_dssp             CCCCCTT
T ss_pred             cCccChh
Confidence            8776544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.88  E-value=2.5e-09  Score=81.49  Aligned_cols=81  Identities=19%  Similarity=0.201  Sum_probs=68.9

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-------cccCCCCe
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-------TQLQSFNA   73 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-------~~~~~l~~   73 (175)
                      ++|++++|.+++..|..+..+++|+.|+|++|.|+ .+|..+..+++|++|+|++|+++......       ....++..
T Consensus       198 ~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~  276 (305)
T d1xkua_         198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG  276 (305)
T ss_dssp             CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSE
T ss_pred             cccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCE
Confidence            47999999999888889999999999999999999 78999999999999999999998543221       23467888


Q ss_pred             eeccCccCC
Q 039964           74 LTYAGNELC   82 (175)
Q Consensus        74 l~~~~N~l~   82 (175)
                      +++++|.+.
T Consensus       277 L~L~~N~~~  285 (305)
T d1xkua_         277 VSLFSNPVQ  285 (305)
T ss_dssp             EECCSSSSC
T ss_pred             EECCCCcCc
Confidence            999999654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.86  E-value=1.6e-09  Score=84.35  Aligned_cols=76  Identities=26%  Similarity=0.307  Sum_probs=35.8

Q ss_pred             EEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccCC
Q 039964            3 LACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNELC   82 (175)
Q Consensus         3 L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l~   82 (175)
                      ++++.|.+++  +..+..+++++.|++++|++++. + .+..+++|+.|++++|++++ +|....+++|+.+++++|.+.
T Consensus       290 l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         290 LELNENQLED--ISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             EECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCC
T ss_pred             cccccccccc--ccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-ChhHcCCCCCCEEECCCCcCC
Confidence            4444455543  12344445555555555555532 2 14455555555555555543 233334445555555555444


Q ss_pred             C
Q 039964           83 G   83 (175)
Q Consensus        83 ~   83 (175)
                      +
T Consensus       365 ~  365 (384)
T d2omza2         365 D  365 (384)
T ss_dssp             B
T ss_pred             C
Confidence            4

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.58  E-value=4.2e-08  Score=71.66  Aligned_cols=79  Identities=19%  Similarity=0.267  Sum_probs=51.0

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL   81 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l   81 (175)
                      .+.++.+.+...  ..+..+++|+.|++++|.+++. + .++++++|+.||+++|++++ +|....+++|+.+++++|.+
T Consensus       133 ~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~Ls~n~l~~-l~~l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         133 VLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL-T-PLANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSCC
T ss_pred             hhhchhhhhchh--hhhccccccccccccccccccc-h-hhcccccceecccCCCccCC-ChhhcCCCCCCEEECcCCcC
Confidence            455666666532  2356667777777777777632 2 26677777777777777765 34455667777777777766


Q ss_pred             CCCC
Q 039964           82 CGLP   85 (175)
Q Consensus        82 ~~~p   85 (175)
                      .+.+
T Consensus       208 t~i~  211 (227)
T d1h6ua2         208 SDVS  211 (227)
T ss_dssp             CBCG
T ss_pred             CCCc
Confidence            6543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.57  E-value=7.8e-08  Score=74.54  Aligned_cols=79  Identities=20%  Similarity=0.317  Sum_probs=64.8

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|++++|.++ .+ +.+..+++|+.|||++|++++ +|+ ++++++|++|++++|++++.. ....+++++.+++.+|.
T Consensus        47 ~~L~l~~~~I~-~l-~gl~~L~nL~~L~Ls~N~l~~-l~~-l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~~~~~~  121 (384)
T d2omza2          47 TTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQ  121 (384)
T ss_dssp             CEEECCSSCCC-CC-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC
T ss_pred             CEEECCCCCCC-Cc-cccccCCCCCEEeCcCCcCCC-Ccc-ccCCccccccccccccccccc-ccccccccccccccccc
Confidence            47899999987 45 468889999999999999994 553 899999999999999998654 35677888899888876


Q ss_pred             CCCC
Q 039964           81 LCGL   84 (175)
Q Consensus        81 l~~~   84 (175)
                      +.+.
T Consensus       122 ~~~~  125 (384)
T d2omza2         122 ITDI  125 (384)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            6543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.57  E-value=9.4e-08  Score=68.53  Aligned_cols=73  Identities=23%  Similarity=0.349  Sum_probs=39.8

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN   79 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N   79 (175)
                      +|++++|.++ .++ .+..+++|+.|++++|++++ +++ ++++++|++|++++|.+.. +|....++.++.+++++|
T Consensus        44 ~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~~-~~~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          44 TLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIAD-ITPLANLTNLTGLTLFNN  116 (199)
T ss_dssp             EEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEECCSS
T ss_pred             EEECCCCCCC-Ccc-ccccCCCcCcCccccccccC-ccc-ccCCccccccccccccccc-cccccccccccccccccc
Confidence            4666666665 332 35556666666666666663 222 5666666666666665553 222334444555555444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.56  E-value=8.8e-10  Score=79.84  Aligned_cols=77  Identities=21%  Similarity=0.306  Sum_probs=41.0

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL   81 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l   81 (175)
                      +|+|++|.++ .++ .+..+++|+.|+|++|.++ .+|.....++.|+.|++++|+++. ++....+++++.+++++|.+
T Consensus        52 ~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~~~~~l~~L~~L~L~~N~i  127 (198)
T d1m9la_          52 HLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKI  127 (198)
T ss_dssp             EEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HHHHHHHHHSSEEEESEEEC
T ss_pred             eeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cccccccccccccccccchh
Confidence            4566666655 343 3555566666666666655 444444444455566666665553 22233445556666666554


Q ss_pred             C
Q 039964           82 C   82 (175)
Q Consensus        82 ~   82 (175)
                      .
T Consensus       128 ~  128 (198)
T d1m9la_         128 T  128 (198)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.52  E-value=1.3e-07  Score=68.33  Aligned_cols=78  Identities=19%  Similarity=0.241  Sum_probs=60.5

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|++++|.++. ++ .+..+++|+.|+|++|.+++ ++ .++.+++|+.|++++|++++ +|....+++++.+++.+|.
T Consensus        49 ~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          49 DQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             CEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTSC
T ss_pred             cEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-ccccccccccccccccccc
Confidence            468888888874 44 37788999999999999985 44 36788999999999999885 4555667788888888876


Q ss_pred             CCC
Q 039964           81 LCG   83 (175)
Q Consensus        81 l~~   83 (175)
                      +..
T Consensus       124 ~~~  126 (210)
T d1h6ta2         124 ISD  126 (210)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.50  E-value=1.8e-07  Score=67.00  Aligned_cols=80  Identities=24%  Similarity=0.326  Sum_probs=63.7

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|++++|.+++ +++ ++++++|+.|++++|.+. .+| .+..++.|+.|++++|..... +....++++..+++++|.
T Consensus        65 ~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~  139 (199)
T d2omxa2          65 TQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNT  139 (199)
T ss_dssp             CEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSC
T ss_pred             CcCccccccccC-ccc-ccCCcccccccccccccc-ccc-ccccccccccccccccccccc-cccchhhhhHHhhhhhhh
Confidence            478999999985 443 889999999999999987 555 378899999999999888754 334567888999999987


Q ss_pred             CCCCC
Q 039964           81 LCGLP   85 (175)
Q Consensus        81 l~~~p   85 (175)
                      +...+
T Consensus       140 l~~~~  144 (199)
T d2omxa2         140 ISDIS  144 (199)
T ss_dssp             CCCCG
T ss_pred             hcccc
Confidence            76544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.48  E-value=2.1e-07  Score=70.92  Aligned_cols=76  Identities=20%  Similarity=0.181  Sum_probs=45.9

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCC-----------------CCCCEEeccCCcCCCCCC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRL-----------------SRLSVMDLSYNNLSGKIP   63 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l-----------------~~L~~L~ls~N~l~g~iP   63 (175)
                      ++|||++|.++ .+|+.   +++|+.|+|++|+|+ .+|..+++|                 +.|++|++++|.++ .+|
T Consensus        41 ~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~-~lp  114 (353)
T d1jl5a_          41 HELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLP  114 (353)
T ss_dssp             SEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCC
T ss_pred             CEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccchhhhhhhhhhhcccchhhhhccccccccccccccc-ccc
Confidence            36888888887 57753   367888888888888 777654321                 23445555555554 233


Q ss_pred             CCcccCCCCeeeccCccCC
Q 039964           64 SGTQLQSFNALTYAGNELC   82 (175)
Q Consensus        64 ~~~~~~~l~~l~~~~N~l~   82 (175)
                      ....+..++.+++.+|.+.
T Consensus       115 ~~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         115 ELQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CCTTCTTCCEEECCSSCCS
T ss_pred             chhhhccceeecccccccc
Confidence            3344555555555555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.47  E-value=2e-07  Score=67.32  Aligned_cols=78  Identities=28%  Similarity=0.344  Sum_probs=60.2

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE   80 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~   80 (175)
                      ++|+|++|.+++ ++ .++.+++|+.|++++|+++ .+| .+..+++|+.|++++|.+.. ++....+..+..+.+.+|.
T Consensus        71 ~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~~-~~~l~~l~~l~~l~~~~n~  145 (210)
T d1h6ta2          71 TKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNK  145 (210)
T ss_dssp             CEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSC
T ss_pred             CEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-cccccccccccccccccccc-ccccccccccccccccccc
Confidence            579999999985 55 3788999999999999998 466 48889999999999998763 4444455666666666665


Q ss_pred             CCC
Q 039964           81 LCG   83 (175)
Q Consensus        81 l~~   83 (175)
                      +.+
T Consensus       146 l~~  148 (210)
T d1h6ta2         146 ITD  148 (210)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.47  E-value=2.4e-09  Score=77.47  Aligned_cols=80  Identities=24%  Similarity=0.221  Sum_probs=66.1

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCC--CCcccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIP--SGTQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP--~~~~~~~l~~l~~~~   78 (175)
                      +.|+|++|.++ .+|..+..+++|+.|++++|.++ .++ .+..+++|+.|++++|+++....  ....+++++.+++++
T Consensus        73 ~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_          73 RILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             CEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             cChhhcccccc-ccccccccccccccccccccccc-ccc-cccccccccccccccchhccccccccccCCCccceeecCC
Confidence            57999999998 68877777789999999999998 454 48889999999999999985432  235678899999999


Q ss_pred             ccCCC
Q 039964           79 NELCG   83 (175)
Q Consensus        79 N~l~~   83 (175)
                      |.++.
T Consensus       150 N~l~~  154 (198)
T d1m9la_         150 NPLYN  154 (198)
T ss_dssp             SHHHH
T ss_pred             Ccccc
Confidence            97654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=3.2e-07  Score=67.11  Aligned_cols=82  Identities=20%  Similarity=0.205  Sum_probs=40.1

Q ss_pred             EEEeecCccccCCChhhcCCcccceeeccccccCccCch-hhhCCCCCCEEeccC-CcCCCCCCCC-cccCCCCeeeccC
Q 039964            2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISS-SLSRLSRLSVMDLSY-NNLSGKIPSG-TQLQSFNALTYAG   78 (175)
Q Consensus         2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~L~ls~-N~l~g~iP~~-~~~~~l~~l~~~~   78 (175)
                      +|+|++|.++...+..|.++++|+.|++++|.+...+|. .+..++.++++++.. |++....+.. ..+++++.+++.+
T Consensus        33 ~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~  112 (242)
T d1xwdc1          33 ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN  112 (242)
T ss_dssp             EEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEES
T ss_pred             EEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccch
Confidence            455555555522222345555555555555555433322 344455555555432 3444333333 3455666666666


Q ss_pred             ccCCC
Q 039964           79 NELCG   83 (175)
Q Consensus        79 N~l~~   83 (175)
                      |.+..
T Consensus       113 ~~l~~  117 (242)
T d1xwdc1         113 TGIKH  117 (242)
T ss_dssp             CCCCS
T ss_pred             hhhcc
Confidence            65543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.35  E-value=5.4e-07  Score=65.53  Aligned_cols=72  Identities=21%  Similarity=0.269  Sum_probs=55.8

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeecc
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYA   77 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~   77 (175)
                      +.|++++|.+.+ ++ .++++++|+.|||++|++++ +|. +.++++|++|++++|++++. |....+++|..++++
T Consensus       154 ~~L~l~~n~~~~-~~-~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~i-~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         154 QYLSIGNAQVSD-LT-PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLT  225 (227)
T ss_dssp             CEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBC-GGGTTCTTCCEEEEE
T ss_pred             cccccccccccc-ch-hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCCC-cccccCCCCCEEEee
Confidence            468888888874 33 37888999999999999984 554 78899999999999998854 445567778877765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.4e-06  Score=63.58  Aligned_cols=79  Identities=15%  Similarity=0.204  Sum_probs=61.1

Q ss_pred             CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC--cccCCCCeeeccC
Q 039964            1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFNALTYAG   78 (175)
Q Consensus         1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~--~~~~~l~~l~~~~   78 (175)
                      ++++.+++.++ .+|+.+.  .+++.|||++|.++...+..|.++++|++|++++|.+...+|..  ..+..+..+.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            36788888898 8998765  58999999999998433446899999999999999998777654  4566777777654


Q ss_pred             -ccCC
Q 039964           79 -NELC   82 (175)
Q Consensus        79 -N~l~   82 (175)
                       |.+.
T Consensus        88 ~n~l~   92 (242)
T d1xwdc1          88 ANNLL   92 (242)
T ss_dssp             CTTCC
T ss_pred             ccccc
Confidence             3444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4e-07  Score=63.32  Aligned_cols=71  Identities=23%  Similarity=0.261  Sum_probs=48.3

Q ss_pred             CChhhcCCcccceeeccccccCcc--CchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCccCCCC
Q 039964           14 ITPKIGQLKSLDFLDLSRNQFFGG--ISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNELCGL   84 (175)
Q Consensus        14 iP~~~~~l~~L~~L~Ls~N~l~g~--iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~l~~~   84 (175)
                      ++..+..+++|+.|||++|+++..  ++..+..+++|+.||+++|.++...+-. .....+..+++.+|.++..
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            333445678888889999888742  2345677888888899988888433211 2234577788888877654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.3e-07  Score=65.81  Aligned_cols=40  Identities=28%  Similarity=0.292  Sum_probs=18.0

Q ss_pred             hCCCCCCEEeccCCcCCCCCC--CC-cccCCCCeeeccCccCC
Q 039964           43 SRLSRLSVMDLSYNNLSGKIP--SG-TQLQSFNALTYAGNELC   82 (175)
Q Consensus        43 ~~l~~L~~L~ls~N~l~g~iP--~~-~~~~~l~~l~~~~N~l~   82 (175)
                      ..++.|++|+|++|+++..-+  .. ..+++++.+++++|.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            345555555555555543221  11 23444555555555444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.00  E-value=8.9e-06  Score=61.54  Aligned_cols=61  Identities=26%  Similarity=0.350  Sum_probs=49.5

Q ss_pred             cCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccCCCCCC
Q 039964           19 GQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNELCGLPL   86 (175)
Q Consensus        19 ~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l~~~p~   86 (175)
                      ..+++|+.|+|++|+++ .+|.   .+++|+.|++++|+++ .+|.  .+.+++.+++++|.+...|.
T Consensus       281 ~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~--~~~~L~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         281 DLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE--LPQNLKQLHVEYNPLREFPD  341 (353)
T ss_dssp             CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSSCCC
T ss_pred             ccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-cccc--ccCCCCEEECcCCcCCCCCc
Confidence            34578999999999998 7885   4678999999999998 5665  35689999999998877653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=6.4e-06  Score=61.90  Aligned_cols=79  Identities=15%  Similarity=0.119  Sum_probs=53.3

Q ss_pred             CEEEeecCccccC-CChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCC-cCCCC-CCC-CcccCCCCeeec
Q 039964            1 MWLACVHFSLTGQ-ITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYN-NLSGK-IPS-GTQLQSFNALTY   76 (175)
Q Consensus         1 ~~L~Ls~N~l~g~-iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N-~l~g~-iP~-~~~~~~l~~l~~   76 (175)
                      ++|||+++.++.. ++..+..+++|+.|+|+++.+++..+..++.+++|++|+++++ .++.. +.. ....++|+.+++
T Consensus        49 ~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~l  128 (284)
T d2astb2          49 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL  128 (284)
T ss_dssp             CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             CEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccc
Confidence            4688888777644 4455677888888888888888777777888888888888874 44311 110 123456777777


Q ss_pred             cCc
Q 039964           77 AGN   79 (175)
Q Consensus        77 ~~N   79 (175)
                      +++
T Consensus       129 s~c  131 (284)
T d2astb2         129 SWC  131 (284)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=1.1e-05  Score=63.04  Aligned_cols=80  Identities=20%  Similarity=0.235  Sum_probs=38.4

Q ss_pred             EEEeecCcccc----CCChhhcCCcccceeeccccccCcc----Cchhhh-CCCCCCEEeccCCcCCCC----CCCC-cc
Q 039964            2 WLACVHFSLTG----QITPKIGQLKSLDFLDLSRNQFFGG----ISSSLS-RLSRLSVMDLSYNNLSGK----IPSG-TQ   67 (175)
Q Consensus         2 ~L~Ls~N~l~g----~iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~-~l~~L~~L~ls~N~l~g~----iP~~-~~   67 (175)
                      .|+|++|.++-    .+...+..+++|+.|||++|.++..    +...+. ...+|++|++++|+++..    ++.. ..
T Consensus        31 ~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~  110 (460)
T d1z7xw1          31 VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT  110 (460)
T ss_dssp             EEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTS
T ss_pred             EEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhc
Confidence            45566665541    2333445556666666666665311    111111 123566666666665432    1111 23


Q ss_pred             cCCCCeeeccCccC
Q 039964           68 LQSFNALTYAGNEL   81 (175)
Q Consensus        68 ~~~l~~l~~~~N~l   81 (175)
                      .++++.+++++|.+
T Consensus       111 ~~~L~~L~L~~N~i  124 (460)
T d1z7xw1         111 LPTLQELHLSDNLL  124 (460)
T ss_dssp             CTTCCEEECCSSBC
T ss_pred             cccccccccccccc
Confidence            45566666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=6.6e-06  Score=64.29  Aligned_cols=83  Identities=20%  Similarity=0.177  Sum_probs=61.5

Q ss_pred             CEEEeecCccccC-CChhhcCCcccceeeccccccCc----cCchhhhCCCCCCEEeccCCcCCCC----CCCC--cccC
Q 039964            1 MWLACVHFSLTGQ-ITPKIGQLKSLDFLDLSRNQFFG----GISSSLSRLSRLSVMDLSYNNLSGK----IPSG--TQLQ   69 (175)
Q Consensus         1 ~~L~Ls~N~l~g~-iP~~~~~l~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~L~ls~N~l~g~----iP~~--~~~~   69 (175)
                      +.||++.|++++. +.+-++.+++++.|+|++|.++-    .++..+..+++|++|||++|.++..    +...  ....
T Consensus         5 ~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~   84 (460)
T d1z7xw1           5 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC   84 (460)
T ss_dssp             EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC
T ss_pred             CEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCC
Confidence            4799999999864 24556778999999999999872    3456678999999999999988521    1111  1124


Q ss_pred             CCCeeeccCccCCC
Q 039964           70 SFNALTYAGNELCG   83 (175)
Q Consensus        70 ~l~~l~~~~N~l~~   83 (175)
                      +++.+++++|.++.
T Consensus        85 ~L~~L~L~~n~it~   98 (460)
T d1z7xw1          85 KIQKLSLQNCCLTG   98 (460)
T ss_dssp             CCCEEECTTSCCBG
T ss_pred             CCCEEECCCCCccc
Confidence            68899999987753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.09  E-value=5.8e-05  Score=57.59  Aligned_cols=81  Identities=15%  Similarity=0.165  Sum_probs=39.4

Q ss_pred             EEEeecCccccC----CChhhcCCcccceeeccccccCcc-----CchhhhCCCCCCEEeccCCcCCCC----CC-CCcc
Q 039964            2 WLACVHFSLTGQ----ITPKIGQLKSLDFLDLSRNQFFGG-----ISSSLSRLSRLSVMDLSYNNLSGK----IP-SGTQ   67 (175)
Q Consensus         2 ~L~Ls~N~l~g~----iP~~~~~l~~L~~L~Ls~N~l~g~-----iP~~~~~l~~L~~L~ls~N~l~g~----iP-~~~~   67 (175)
                      .|+++.|.++..    +...+...+.|+.|+|++|.++..     +...+..+++|+.|++++|.++..    +. ....
T Consensus       162 ~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~  241 (344)
T d2ca6a1         162 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS  241 (344)
T ss_dssp             EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             eeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccc
Confidence            455555555411    222344455666666666665421     222344556666666666655321    10 0123


Q ss_pred             cCCCCeeeccCccCC
Q 039964           68 LQSFNALTYAGNELC   82 (175)
Q Consensus        68 ~~~l~~l~~~~N~l~   82 (175)
                      .++++.+++++|.+.
T Consensus       242 ~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         242 WPNLRELGLNDCLLS  256 (344)
T ss_dssp             CTTCCEEECTTCCCC
T ss_pred             cccchhhhhhcCccC
Confidence            345566666666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.05  E-value=5.6e-05  Score=57.70  Aligned_cols=82  Identities=18%  Similarity=0.181  Sum_probs=49.9

Q ss_pred             CEEEeecCccccC-----CChhhcCCcccceeeccccccCcc----CchhhhCCCCCCEEeccCCcCCCCCCCC------
Q 039964            1 MWLACVHFSLTGQ-----ITPKIGQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNLSGKIPSG------   65 (175)
Q Consensus         1 ~~L~Ls~N~l~g~-----iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l~g~iP~~------   65 (175)
                      +.|+|++|.++..     +...+...++|+.|+|++|.++..    +...+..++.|++|++++|.+++.-...      
T Consensus       189 ~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~  268 (344)
T d2ca6a1         189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  268 (344)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             cccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhh
Confidence            3677777776531     223455667788888888877532    3445667777888888888765321110      


Q ss_pred             -cccCCCCeeeccCccCC
Q 039964           66 -TQLQSFNALTYAGNELC   82 (175)
Q Consensus        66 -~~~~~l~~l~~~~N~l~   82 (175)
                       .....++.+++++|.+.
T Consensus       269 ~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         269 KLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             TCSSCCCCEEECCSSCCB
T ss_pred             hccCCCCCEEECCCCcCC
Confidence             11245677777777653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00046  Score=51.30  Aligned_cols=78  Identities=17%  Similarity=0.189  Sum_probs=50.7

Q ss_pred             EEEeecC--ccccC-CChhhcCCcccceeecccc-ccCccCchhhhCCCCCCEEeccC-CcCCCCCCCC-cccCCCCeee
Q 039964            2 WLACVHF--SLTGQ-ITPKIGQLKSLDFLDLSRN-QFFGGISSSLSRLSRLSVMDLSY-NNLSGKIPSG-TQLQSFNALT   75 (175)
Q Consensus         2 ~L~Ls~N--~l~g~-iP~~~~~l~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~L~ls~-N~l~g~iP~~-~~~~~l~~l~   75 (175)
                      .|++++.  .++.. +..-...+++|+.||++++ .+++.....+.++++|++|++++ +.++...... ..+++|+.++
T Consensus       152 ~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~  231 (284)
T d2astb2         152 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ  231 (284)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             hhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEe
Confidence            5666643  23322 3333456788888888875 57767777788888888888888 4555433322 4567788888


Q ss_pred             ccCc
Q 039964           76 YAGN   79 (175)
Q Consensus        76 ~~~N   79 (175)
                      +.++
T Consensus       232 l~~~  235 (284)
T d2astb2         232 VFGI  235 (284)
T ss_dssp             CTTS
T ss_pred             eeCC
Confidence            7765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.23  E-value=0.00075  Score=46.25  Aligned_cols=80  Identities=10%  Similarity=0.117  Sum_probs=43.0

Q ss_pred             CEEEeecC-ccccC----CChhhcCCcccceeeccccccCcc----CchhhhCCCCCCEEeccCCcCCCCCCC-----Cc
Q 039964            1 MWLACVHF-SLTGQ----ITPKIGQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNLSGKIPS-----GT   66 (175)
Q Consensus         1 ~~L~Ls~N-~l~g~----iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l~g~iP~-----~~   66 (175)
                      +.|+|+++ .++..    +-..+...++|+.|+|++|.+...    +...+...+.|++|++++|.++..--.     ..
T Consensus        18 ~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~   97 (167)
T d1pgva_          18 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL   97 (167)
T ss_dssp             CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT
T ss_pred             cEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHH
Confidence            35677653 34321    222345556777777777777521    223345567777777777766532110     01


Q ss_pred             ccCCCCeeeccCcc
Q 039964           67 QLQSFNALTYAGNE   80 (175)
Q Consensus        67 ~~~~l~~l~~~~N~   80 (175)
                      .-++++.+++++|.
T Consensus        98 ~n~sL~~L~l~~n~  111 (167)
T d1pgva_          98 VTQSIVEFKADNQR  111 (167)
T ss_dssp             TTCCCSEEECCCCS
T ss_pred             hCCcCCEEECCCCc
Confidence            22446666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.70  E-value=0.0026  Score=43.37  Aligned_cols=59  Identities=12%  Similarity=0.065  Sum_probs=44.5

Q ss_pred             CEEEeecCccccC----CChhhcCCcccceeeccccccCcc----CchhhhCCCCCCEEeccCCcCC
Q 039964            1 MWLACVHFSLTGQ----ITPKIGQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNLS   59 (175)
Q Consensus         1 ~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l~   59 (175)
                      +.|+|++|.+...    +-+.+...++|+.|+|++|.++..    +-..+...++|++|++++|...
T Consensus        47 ~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          47 EKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             CEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             ceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            4789999988632    224455668899999999999843    2234667789999999998765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.34  E-value=0.041  Score=36.80  Aligned_cols=40  Identities=8%  Similarity=0.011  Sum_probs=19.3

Q ss_pred             CCcccceeeccc-cccCcc----CchhhhCCCCCCEEeccCCcCC
Q 039964           20 QLKSLDFLDLSR-NQFFGG----ISSSLSRLSRLSVMDLSYNNLS   59 (175)
Q Consensus        20 ~l~~L~~L~Ls~-N~l~g~----iP~~~~~l~~L~~L~ls~N~l~   59 (175)
                      +.+.|+.|+|++ +.++..    +-..+...+.|++|++++|.++
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            345566666654 334311    1122334555666666666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=81.41  E-value=0.51  Score=31.05  Aligned_cols=59  Identities=7%  Similarity=0.022  Sum_probs=42.0

Q ss_pred             CEEEeec-CccccC----CChhhcCCcccceeeccccccCcc----CchhhhCCCCCCEEeccCCcCC
Q 039964            1 MWLACVH-FSLTGQ----ITPKIGQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNLS   59 (175)
Q Consensus         1 ~~L~Ls~-N~l~g~----iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l~   59 (175)
                      ++|+|++ +.++..    +-..+...++|+.|+|++|.++..    +-..+...++++.+++++|.+.
T Consensus        20 ~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          20 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            3678876 445422    223456788999999999998743    2234566889999999998875