Citrus Sinensis ID: 039965

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
MASTNIFLLQLSIFLLIFLPKPCFPKNQTLFFPLKTQALAHYYNYRATANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGFEDARTTGLMGMNRGSLSFITQMGFPKFSYCISGVDSSGVLLFGDASFAWLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDIASKRLGIIV
cccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEEEEEEEEcccccccccccccEEEEEccccccHHHHHcccccEEEEEcccccccEEEEccccccccccccccccccccccccccccccEEEEEEEEEEccEEEccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEcccEEEEccccEEEEEcccccccccEEEEEEEEccccccccEEEEcEEEEEEEEEEEccccEEEEEccccccHHHHccccc
cccccEEEEEEEEEEEEccccccccccccccccHHHccccccccccccccccccccccEEEEEEEEccccccEEEEEEccccEEEEEccccccccccccccccccccccccccHHHccccccccccccccccccEEEEEEEcccccccEEEEEEEEEEccccccccEEcccccEEcccccccccHHHccccEEEEEEEccccccEEEEccccccccccccEccccccccccccccccEEEEEEEEEEEccEEEcccHHHcccccccccEEEEEcccEEEcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEccEEEEccHHHEEEEEcccccccccEEEEEEEccccccccEEEEEEEEEccEEEEEEccccEEEEccccHHHHHHHHcccc
MASTNIFLLQLSIFLLIflpkpcfpknqtlffplkTQALAHYYNYRATANKLSFHHNVSLTVslklgsppqdvtMVLDtgselswlhckktvsfnsifnpllsssyspvpcnsptckiktqdlpvpascdpkglcrvtltyadltstegnlatetiliggparpgfedarttglmgmnrgsLSFItqmgfpkfsycisgvdssgvllfgdasfawlkplsytplvriskplpyfdrVAYSVQLEGIKVgskvlnlpksvfipdhtgagqtmvdsGTQFTFLLGEVYSALKNEFIQQTKGilrvfddpnfvfQGAMDLCYLIestgpslprlpivslmfsgaemsvsGERLlyrvpglsrgrdsvycftfgnsdllGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDIASKRLGIIV
MASTNIFLLQLSIFLLIFLPKPCFPKNQTLFFPLKTQALAHYYNYRATANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCRVTLTYAdltstegnlatetiliggparpGFEDARTTGLMGMNRGSLSFITQMGFPKFSYCISGVDSSGVLLFGDASFAWLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRcdiaskrlgiiv
MASTNifllqlsiflliflPKPCFPKNQTLFFPLKTQALAHYYNYRATANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGFEDARTTGLMGMNRGSLSFITQMGFPKFSYCISGVDSSGVLLFGDASFAWLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDIASKRLGIIV
****NIFLLQLSIFLLIFLPKPCFPKNQTLFFPLKTQALAHYYNYRATANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGFEDARTTGLMGMNRGSLSFITQMGFPKFSYCISGVDSSGVLLFGDASFAWLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDIASKRLGI**
***TNIFLLQLSIFLLIF*************************************HNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIK*************GLCRVTLTYADLTSTEGNLATETILIGGPARPGFEDARTTGLMGMNRGSLSFITQMGFPKFSYCISGVDSSGVLLFGDASFAWLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKG*********FVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDIASKRLGIIV
MASTNIFLLQLSIFLLIFLPKPCFPKNQTLFFPLKTQALAHYYNYRATANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGFEDARTTGLMGMNRGSLSFITQMGFPKFSYCISGVDSSGVLLFGDASFAWLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDIASKRLGIIV
**STNIFLLQLSIFLLIFLPKPCFPKNQ*L*******************NKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGFEDARTTGLMGMNRGSLSFITQMGFPKFSYCISGVDSSGVLLFGDASFAWLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDIASKRLGIIV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASTNIFLLQLSIFLLIFLPKPCFPKNQTLFFPLKTQALAHYYNYRATANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGFEDARTTGLMGMNRGSLSFITQMGFPKFSYCISGVDSSGVLLFGDASFAWLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDIASKRLGIIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query419 2.2.26 [Sep-21-2011]
Q9LZL3453 Aspartic proteinase PCS1 no no 0.923 0.854 0.610 1e-139
Q766C3437 Aspartic proteinase nepen N/A no 0.763 0.732 0.323 2e-35
Q766C2438 Aspartic proteinase nepen N/A no 0.766 0.732 0.318 2e-34
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.749 0.628 0.273 8e-23
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.749 0.668 0.312 2e-22
Q3EBM5447 Probable aspartic proteas no no 0.892 0.836 0.249 1e-21
Q6XBF8437 Aspartic proteinase CDR1 no no 0.770 0.739 0.267 7e-20
Q9S9K4475 Aspartic proteinase-like no no 0.732 0.646 0.240 5e-16
Q9LX20528 Aspartic proteinase-like no no 0.720 0.571 0.249 5e-08
P22929390 Acid protease OS=Saccharo N/A no 0.682 0.733 0.227 5e-07
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function desciption
 Score =  495 bits (1274), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 251/411 (61%), Positives = 310/411 (75%), Gaps = 24/411 (5%)

Query: 28  QTLFFPLKTQALAHYYNYRATANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLH 87
           QTL  PLKT+      ++R T +KL FHHNV+LTV+L +G+PPQ+++MV+DTGSELSWL 
Sbjct: 44  QTLVLPLKTRITP--TDHRPT-DKLHFHHNVTLTVTLTVGTPPQNISMVIDTGSELSWLR 100

Query: 88  CKKTVSFNSI--FNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCRVTLTYADLT 145
           C ++ + N +  F+P  SSSYSP+PC+SPTC+ +T+D  +PASCD   LC  TL+YAD +
Sbjct: 101 CNRSSNPNPVNNFDPTRSSSYSPIPCSSPTCRTRTRDFLIPASCDSDKLCHATLSYADAS 160

Query: 146 STEGNLATETILIGGPARPGF---------------EDARTTGLMGMNRGSLSFITQMGF 190
           S+EGNLA E    G                      ED +TTGL+GMNRGSLSFI+QMGF
Sbjct: 161 SSEGNLAAEIFHFGNSTNDSNLIFGCMGSVSGSDPEEDTKTTGLLGMNRGSLSFISQMGF 220

Query: 191 PKFSYCISGVDS-SGVLLFGDASFAWLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVG 249
           PKFSYCISG D   G LL GD++F WL PL+YTPL+RIS PLPYFDRVAY+VQL GIKV 
Sbjct: 221 PKFSYCISGTDDFPGFLLLGDSNFTWLTPLNYTPLIRISTPLPYFDRVAYTVQLTGIKVN 280

Query: 250 SKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNF 309
            K+L +PKSV +PDHTGAGQTMVDSGTQFTFLLG VY+AL++ F+ +T GIL V++DP+F
Sbjct: 281 GKLLPIPKSVLVPDHTGAGQTMVDSGTQFTFLLGPVYTALRSHFLNRTNGILTVYEDPDF 340

Query: 310 VFQGAMDLCYLIEST---GPSLPRLPIVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYC 366
           VFQG MDLCY I         L RLP VSL+F GAE++VSG+ LLYRVP L+ G DSVYC
Sbjct: 341 VFQGTMDLCYRISPVRIRSGILHRLPTVSLVFEGAEIAVSGQPLLYRVPHLTVGNDSVYC 400

Query: 367 FTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDIASKRLGI 417
           FTFGNSDL+G+EA+VIGHHHQQN+W+EFDL  SR+G A V CD++ +RLGI
Sbjct: 401 FTFGNSDLMGMEAYVIGHHHQQNMWIEFDLQRSRIGLAPVECDVSGQRLGI 451
Embryo-specific aspartic protease that limits programmed cell death during reproductive development. Possesses peptidase activity toward casein in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|P22929|CARP_SACFI Acid protease OS=Saccharomycopsis fibuligera GN=PEP1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query419
255581545442 Aspartic proteinase nepenthesin-1 precur 0.980 0.929 0.680 1e-170
297827577438 aspartyl protease family protein [Arabid 0.971 0.929 0.665 1e-164
224101015440 predicted protein [Populus trichocarpa] 0.985 0.938 0.657 1e-162
18405138442 Eukaryotic aspartyl protease family prot 0.966 0.916 0.667 1e-162
225449446436 PREDICTED: aspartic proteinase nepenthes 0.945 0.908 0.673 1e-162
26451756442 unknown protein [Arabidopsis thaliana] 0.966 0.916 0.665 1e-161
147821993429 hypothetical protein VITISV_016757 [Viti 0.945 0.923 0.671 1e-161
224109494444 predicted protein [Populus trichocarpa] 0.985 0.930 0.634 1e-160
307136234412 aspartic proteinase nepenthesin-1 precur 0.930 0.946 0.665 1e-158
359482097458 PREDICTED: aspartic proteinase nepenthes 0.923 0.844 0.669 1e-156
>gi|255581545|ref|XP_002531578.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] gi|223528808|gb|EEF30814.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 296/435 (68%), Positives = 344/435 (79%), Gaps = 24/435 (5%)

Query: 7   FLLQLSIFLLIFLPKPCFPKNQ-TLFFPLKTQALAHYYNYRA---------TANKLSFHH 56
           FL++   F +    K CF   Q +L  PLKTQ  +H    R          T NKL FHH
Sbjct: 6   FLVEALFFFIFLQSKYCFSSKQASLILPLKTQRHSHISTARKYFTTATASSTTNKLLFHH 65

Query: 57  NVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTC 116
           NVSLTVSL +GSPPQ+VTMVLDTGSELSWLHCKKT   NS+FNPL S +YS VPC SPTC
Sbjct: 66  NVSLTVSLTVGSPPQNVTMVLDTGSELSWLHCKKTQFLNSVFNPLSSKTYSKVPCLSPTC 125

Query: 117 KIKTQDLPVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARP---------GF- 166
           K +T+DL +P SCD   LC V ++YAD TS EGNLA ET  +G   +P         GF 
Sbjct: 126 KTRTRDLTIPVSCDATKLCHVIVSYADATSIEGNLAFETFRLGSLTKPATIFGCMDSGFS 185

Query: 167 ----EDARTTGLMGMNRGSLSFITQMGFPKFSYCISGVDSSGVLLFGDASFAWLKPLSYT 222
               ED++TTGL+GMNRGSLSF+ QMG+PKFSYCISG DS+GVLL G+ASF WLKPLSYT
Sbjct: 186 SNSEEDSKTTGLIGMNRGSLSFVNQMGYPKFSYCISGFDSAGVLLLGNASFPWLKPLSYT 245

Query: 223 PLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLL 282
           PLV+IS PLPYFDRVAY+VQLEGIKV +KVL+LPKSVF+PDHTGAGQTMVDSGTQFTFLL
Sbjct: 246 PLVQISTPLPYFDRVAYTVQLEGIKVKNKVLSLPKSVFVPDHTGAGQTMVDSGTQFTFLL 305

Query: 283 GEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAE 342
           G VY+ALKNEF+ QT+GIL+V +D NFVFQGAMDLCYL++S+ P+L  LP+VSLMF GAE
Sbjct: 306 GPVYTALKNEFLSQTRGILKVLNDDNFVFQGAMDLCYLLDSSRPNLQNLPVVSLMFQGAE 365

Query: 343 MSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVG 402
           MSVSGERLLYRVPG  RGRDSV+CFTFGNSDLLG+EAFVIGHHHQQN+W+EFDL  SR+G
Sbjct: 366 MSVSGERLLYRVPGEVRGRDSVWCFTFGNSDLLGVEAFVIGHHHQQNVWMEFDLEKSRIG 425

Query: 403 FAEVRCDIASKRLGI 417
            A+VRCD+A ++LG+
Sbjct: 426 LADVRCDVAGQKLGL 440

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297827577|ref|XP_002881671.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297327510|gb|EFH57930.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224101015|ref|XP_002312106.1| predicted protein [Populus trichocarpa] gi|222851926|gb|EEE89473.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18405138|ref|NP_565911.1| Eukaryotic aspartyl protease family protein [Arabidopsis thaliana] gi|13877759|gb|AAK43957.1|AF370142_1 unknown protein [Arabidopsis thaliana] gi|15293231|gb|AAK93726.1| unknown protein [Arabidopsis thaliana] gi|20196976|gb|AAB87120.2| expressed protein [Arabidopsis thaliana] gi|20197046|gb|AAM14894.1| expressed protein [Arabidopsis thaliana] gi|330254616|gb|AEC09710.1| Eukaryotic aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225449446|ref|XP_002283126.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|26451756|dbj|BAC42973.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147821993|emb|CAN70318.1| hypothetical protein VITISV_016757 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224109494|ref|XP_002315215.1| predicted protein [Populus trichocarpa] gi|222864255|gb|EEF01386.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|307136234|gb|ADN34070.1| aspartic proteinase nepenthesin-1 precursor [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|359482097|ref|XP_002271077.2| PREDICTED: aspartic proteinase nepenthesin-1-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query419
TAIR|locus:2043245442 AT2G39710 [Arabidopsis thalian 0.921 0.873 0.687 2.1e-148
TAIR|locus:2185173453 PCS1 "PROMOTION OF CELL SURVIV 0.763 0.706 0.634 1.2e-113
TAIR|locus:2013865430 AT1G66180 [Arabidopsis thalian 0.828 0.806 0.388 1.3e-59
TAIR|locus:2169886442 AT5G37540 [Arabidopsis thalian 0.708 0.671 0.386 2.5e-49
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.763 0.662 0.329 4.6e-34
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.742 0.643 0.323 5.2e-33
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.754 0.651 0.326 8.5e-33
TAIR|locus:2095365470 AT3G20015 [Arabidopsis thalian 0.754 0.672 0.327 2.3e-30
TAIR|locus:2169369455 AT5G07030 [Arabidopsis thalian 0.754 0.694 0.311 7.1e-29
TAIR|locus:2017799484 AT1G79720 [Arabidopsis thalian 0.778 0.673 0.291 4e-28
TAIR|locus:2043245 AT2G39710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1449 (515.1 bits), Expect = 2.1e-148, P = 2.1e-148
 Identities = 281/409 (68%), Positives = 334/409 (81%)

Query:    27 NQTLFFPLKTQALAHYYNYRATANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWL 86
             NQTL F LKTQ L      +++++KLSF HNV+LTV+L +G PPQ+++MVLDTGSELSWL
Sbjct:    37 NQTLLFSLKTQKLP-----QSSSDKLSFRHNVTLTVTLAVGDPPQNISMVLDTGSELSWL 91

Query:    87 HCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKG-LCRVTLTYADLT 145
             HCKK+ +  S+FNP+ SS+YSPVPC+SP C+ +T+DLP+PASCDPK  LC V ++YAD T
Sbjct:    92 HCKKSPNLGSVFNPVSSSTYSPVPCSSPICRTRTRDLPIPASCDPKTHLCHVAISYADAT 151

Query:   146 STEGNLATETILIGGPARPG--F------------EDARTTGLMGMNRGSLSFITQMGFP 191
             S EGNLA ET +IG   RPG  F            EDA++TGLMGMNRGSLSF+ Q+GF 
Sbjct:   152 SIEGNLAHETFVIGSVTRPGTLFGCMDSGLSSNSEEDAKSTGLMGMNRGSLSFVNQLGFS 211

Query:   192 KFSYCISGVDSSGVLLFGDASFAWLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSK 251
             KFSYCISG DSSG LL GDAS++WL P+ YTPLV  S PLPYFDRVAY+VQLEGI+VGSK
Sbjct:   212 KFSYCISGSDSSGFLLLGDASYSWLGPIQYTPLVLQSTPLPYFDRVAYTVQLEGIRVGSK 271

Query:   252 VLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVF 311
             +L+LPKSVF+PDHTGAGQTMVDSGTQFTFL+G VY+ALKNEFI QTK +LR+ DDP+FVF
Sbjct:   272 ILSLPKSVFVPDHTGAGQTMVDSGTQFTFLMGPVYTALKNEFITQTKSVLRLVDDPDFVF 331

Query:   312 QGAMDLCYLIESTG-PSLPRLPIVSLMFSGAEMSVSGERLLYRVPGL-SRGRDSVYCFTF 369
             QG MDLCY + ST  P+   LP+VSLMF GAEMSVSG++LLYRV G  S G++ VYCFTF
Sbjct:   332 QGTMDLCYKVGSTTRPNFSGLPMVSLMFRGAEMSVSGQKLLYRVNGAGSEGKEEVYCFTF 391

Query:   370 GNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFA-EVRCDIASKRLGI 417
             GNSDLLGIEAFVIGHHHQQN+W+EFDL  SRVGFA  VRCD+AS+RLG+
Sbjct:   392 GNSDLLGIEAFVIGHHHQQNVWMEFDLAKSRVGFAGNVRCDLASQRLGL 440
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
TAIR|locus:2185173 PCS1 "PROMOTION OF CELL SURVIVAL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013865 AT1G66180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169886 AT5G37540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095365 AT3G20015 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169369 AT5G07030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017799 AT1G79720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691
3rd Layer3.4.23.35LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.4__2053__AT2G39710.1
annotation not avaliable (438 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 2e-64
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 4e-48
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 1e-37
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 5e-29
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 4e-28
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 1e-13
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 4e-10
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 9e-10
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 5e-07
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 3e-06
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 1e-04
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 2e-04
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 0.001
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 0.004
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 0.004
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information 
 Score =  207 bits (529), Expect = 2e-64
 Identities = 101/366 (27%), Positives = 138/366 (37%), Gaps = 121/366 (33%)

Query: 61  TVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKT 120
            V+L +G+PPQ  ++++DTGS+L+W  C                                
Sbjct: 3   LVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------- 30

Query: 121 QDLPVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGG--PARPGF-----------E 167
                         C    +Y D +ST G LATET   G    + P              
Sbjct: 31  --------------CSYEYSYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGS 76

Query: 168 DARTTGLMGMNRGSLSFITQMG--FPKFSYCISGVD---SSGVLLFGDASFAWLKPLSYT 222
                G++G+ RG LS ++Q+G    KFSYC+   D    S  L+ GDA+      + YT
Sbjct: 77  FGGADGILGLGRGPLSLVSQLGSTGNKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYT 136

Query: 223 PLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLL 282
           PLV+      Y     Y V LEGI VG K L +P SVF  D  G+G T++DSGT  T+L 
Sbjct: 137 PLVKNPANPTY-----YYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLP 191

Query: 283 GEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAE 342
              Y  L                     F G                          GA+
Sbjct: 192 DPAYPDLT------------------LHFDG--------------------------GAD 207

Query: 343 MSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVG 402
           + +  E     V         V C    +S        ++G+  QQN  VE+DL NSR+G
Sbjct: 208 LELPPENYFVDVGE------GVVCLAILSSS--SGGVSILGNIQQQNFLVEYDLENSRLG 259

Query: 403 FAEVRC 408
           FA   C
Sbjct: 260 FAPADC 265

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 419
PLN03146431 aspartyl protease family protein; Provisional 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.95
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.92
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.82
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 98.04
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 97.02
PF1365090 Asp_protease_2: Aspartyl protease 96.17
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.53
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.47
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 93.35
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 93.17
COG3577215 Predicted aspartyl protease [General function pred 92.32
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 90.15
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 89.44
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 88.72
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 85.49
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 85.06
PF1365090 Asp_protease_2: Aspartyl protease 84.92
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 84.27
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 82.51
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 82.14
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.8e-59  Score=457.75  Aligned_cols=321  Identities=32%  Similarity=0.590  Sum_probs=261.9

Q ss_pred             ceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC--C--CCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 039965           57 NVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT--V--SFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPK  132 (419)
Q Consensus        57 ~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~--~--~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~  132 (419)
                      +..|+++|.||||||++.|+|||||+++||+|.+|  |  +.++.|||++|+||+.+.|.++.|+....    ...|..+
T Consensus        82 ~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~----~~~c~~~  157 (431)
T PLN03146         82 GGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN----QASCSDE  157 (431)
T ss_pred             CccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCC----CCCCCCC
Confidence            56899999999999999999999999999999886  3  34689999999999999999999975432    3457766


Q ss_pred             CCCeeEEecCCCCeeeeEEEEEEEEeCCC-----CCCCC------C-----CCCcceeeeccCCCCchhhhhcC---Cee
Q 039965          133 GLCRVTLTYADLTSTEGNLATETILIGGP-----ARPGF------E-----DARTTGLMGMNRGSLSFITQMGF---PKF  193 (419)
Q Consensus       133 ~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~-----~~~~~------~-----~~~~~GIlGLg~~~~s~~~ql~~---~~F  193 (419)
                      +.|.|.+.|+||+.+.|.+++|+|+|++.     +++++      .     ....+||||||+...|+++|+..   ++|
T Consensus       158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~F  237 (431)
T PLN03146        158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKF  237 (431)
T ss_pred             CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcE
Confidence            77999999999987899999999999974     35554      1     12578999999999999999765   689


Q ss_pred             EEeecCC----CCCceEEeCCCCccCC-CCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccCCCCCC
Q 039965          194 SYCISGV----DSSGVLLFGDASFAWL-KPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAG  268 (419)
Q Consensus       194 s~~l~~~----~~~G~l~fGg~d~~~~-g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~  268 (419)
                      |+||.+.    ...|.|+||+. .++. +.+.|+|++....      ..+|.|+|++|+||++.+.++...+.  ..+.+
T Consensus       238 SycL~~~~~~~~~~g~l~fG~~-~~~~~~~~~~tPl~~~~~------~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g  308 (431)
T PLN03146        238 SYCLVPLSSDSNGTSKINFGTN-AIVSGSGVVSTPLVSKDP------DTFYYLTLEAISVGSKKLPYTGSSKN--GVEEG  308 (431)
T ss_pred             EEECCCCCCCCCCcceEEeCCc-cccCCCCceEcccccCCC------CCeEEEeEEEEEECCEECcCCccccc--cCCCC
Confidence            9999642    24799999995 3444 3589999986421      25799999999999999887665553  13346


Q ss_pred             cEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEcCcEEEEccc
Q 039965          269 QTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSVSGE  348 (419)
Q Consensus       269 ~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g~~~~i~~~  348 (419)
                      .+||||||++++||+++|++|+++|.+.+.....  ...    .+.+..||....    ...+|+|+|+|+|+++.|+|+
T Consensus       309 ~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~--~~~----~~~~~~C~~~~~----~~~~P~i~~~F~Ga~~~l~~~  378 (431)
T PLN03146        309 NIIIDSGTTLTLLPSDFYSELESAVEEAIGGERV--SDP----QGLLSLCYSSTS----DIKLPIITAHFTGADVKLQPL  378 (431)
T ss_pred             cEEEeCCccceecCHHHHHHHHHHHHHHhccccC--CCC----CCCCCccccCCC----CCCCCeEEEEECCCeeecCcc
Confidence            7999999999999999999999999988864211  111    113568998532    146899999999999999999


Q ss_pred             ceeEEecCccCCCCceEEEEEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCCCCc
Q 039965          349 RLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDI  410 (419)
Q Consensus       349 ~y~~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c~~  410 (419)
                      +|+++.      .++..|+++....    +.||||+.|||++|+|||++++|||||+++|+.
T Consensus       379 ~~~~~~------~~~~~Cl~~~~~~----~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~  430 (431)
T PLN03146        379 NTFVKV------SEDLVCFAMIPTS----SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK  430 (431)
T ss_pred             eeEEEc------CCCcEEEEEecCC----CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence            999985      3456899877543    359999999999999999999999999999975

>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
3vla_A413 Crystal Structure Of Edgp Length = 413 3e-14
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 3e-14
3qi1_A408 Design And Synthesis Of Hydroxyethylamine (Hea) Bac 7e-05
1tqf_A405 Crystal Structure Of Human Beta Secretase Complexed 8e-05
2q15_A385 Structure Of Bace Complexed To Compound 3a Length = 8e-05
3exo_A413 Crystal Structure Of Bace1 Bound To Inhibitor Lengt 8e-05
2vie_A392 Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2- 8e-05
2qzl_A411 Crystal Structure Of Human Beta Secretase Complexed 8e-05
2q11_A388 Structure Of Bace Complexed To Compound 1 Length = 9e-05
3tpj_A433 Apo Structure Of Bace1 Length = 433 1e-04
3dm6_A406 Beta-Secretase 1 Complexed With Statine-Based Inhib 1e-04
1ym4_A408 Crystal Structure Of Human Beta Secretase Complexed 1e-04
4ewo_A386 Design And Synthesis Of Potent Hydroxyethylamine (H 1e-04
3aup_A403 Crystal Structure Of Basic 7s Globulin From Soybean 1e-04
3ixk_A405 Potent Beta-Secretase 1 Inhibitor Length = 405 1e-04
2hm1_A406 Crystal Structure Of Human Beta-Secretase (Bace) In 1e-04
3hvg_A411 Structure Of Bace (Beta Secretase) In Complex With 1e-04
2zji_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 1e-04
1w50_A411 Apo Structure Of Bace (beta Secretase) Length = 411 1e-04
1ym2_A402 Crystal Structure Of Human Beta Secretase Complexed 1e-04
2zjn_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 1e-04
3vv6_A416 Crystal Structure Of Beta Secetase In Complex With 1e-04
3l58_A414 Structure Of Bace Bound To Sch589432 Length = 414 1e-04
2fdp_A388 Crystal Structure Of Beta-Secretase Complexed With 1e-04
4dpf_A391 Bace-1 In Complex With A Hea-Macrocyclic Type Inhib 1e-04
1sgz_A389 Crystal Structure Of Unbound Beta-Secretase Catalyt 1e-04
3lpi_A455 Structure Of Bace Bound To Sch745132 Length = 455 1e-04
3kmx_A395 Structure Of Bace Bound To Sch346572 Length = 395 1e-04
2zhr_A411 Crystal Structure Of Bace1 In Complex With Om99-2 A 1e-04
3u6a_A390 Rational Design And Synthesis Of Aminopiperazinones 1e-04
2of0_A402 X-Ray Crystal Structure Of Beta Secretase Complexed 1e-04
3tpr_A433 Crystal Structure Of Bace1 Complexed With An Inhibi 1e-04
3ckp_A412 Crystal Structure Of Bace-1 In Complex With Inhibit 1e-04
2hiz_A455 Crystal Structure Of Human Beta-Secretase (Bace) In 1e-04
3udh_A404 Crystal Structure Of Bace With Compound 1 Length = 1e-04
2qu2_A415 Bace1 With Compound 1 Length = 415 1e-04
2va5_A455 X-Ray Crystal Structure Of Beta Secretase Complexed 1e-04
1fkn_A391 Structure Of Beta-Secretase Complexed With Inhibito 1e-04
4b1d_A388 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 1e-04
3cib_A390 Structure Of Bace Bound To Sch727596 Length = 390 1e-04
2wjo_A412 Human Bace (Beta Secretase) In Complex With Cyclohe 1e-04
2qk5_A395 Structure Of Bace1 Bound To Sch626485 Length = 395 2e-04
3r1g_B402 Structure Basis Of Allosteric Inhibition Of Bace1 B 2e-04
2zjk_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 2e-04
3bra_A409 Bace-1 Complexed With Compound 1 Length = 409 2e-04
2zjj_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 3e-04
2zjh_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 3e-04
3hd8_A389 Crystal Structure Of The Triticum Aestivum Xylanase 4e-04
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure 
Iteration: 1

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 162/384 (42%), Gaps = 78/384 (20%)
Query: 75  MVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQ-------DLPVPA 127
           +V+D G    W+ C +           +SS+Y PV C +  C +          + P P 
Sbjct: 37  LVVDLGGRFLWVDCDQN---------YVSSTYRPVRCRTSQCSLSGSIACGDCFNGPRPG 87
Query: 128 SCD-------PKGLCRVTLT----YADLTSTEGNLATETILIGGPARPGFEDARTT---- 172
            C+       P+     T T      D+ S E    + +  +    R  F  A T+    
Sbjct: 88  -CNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQN 146
Query: 173 ------GLMGMNRGSLSFITQMGFP-----KFSYCISGVDSSG-VLLFGDASFAWL---- 216
                 G+ G+ R  ++  +Q         KF+ C+SG  SS  V++FG+  + +L    
Sbjct: 147 LASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNII 206
Query: 217 ---KPLSYTPLVRISKPLPYFD-------RVAYSVQLEGIKVGSKVLNLPKSVFIPDHTG 266
              K L+YTPL  ++ P+            V Y + ++ IK+ SK++ L  S+      G
Sbjct: 207 VSDKTLTYTPL--LTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAG 264
Query: 267 AGQTMVDSGTQFTFLLGEVYSALKNEFIQQT--KGILRVFDDPNFVFQGAMDLCYLIEST 324
            G T + +   +T L   +Y A+   FI+++  + I RV     F   GA      I ST
Sbjct: 265 LGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPF---GACFSTDNILST 321
Query: 325 --GPSLPRLPIVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFTF--GNSDLLGIEAF 380
             GPS+P + +V L       +++G   +  +       D+V C     G S+L    + 
Sbjct: 322 RLGPSVPSIDLV-LQSESVVWTITGSNSMVYI------NDNVVCLGVVDGGSNLR--TSI 372
Query: 381 VIGHHHQQNLWVEFDLINSRVGFA 404
           VIG H  ++  V+FDL  SRVGF+
Sbjct: 373 VIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1 Inhibitors: Prime Side Chromane-Containing Inhibitors Length = 408 Back     alignment and structure
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Inhibitor Length = 405 Back     alignment and structure
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a Length = 385 Back     alignment and structure
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor Length = 413 Back     alignment and structure
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-Hydroxy- 3-((1,1, 5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2- Oxopyrrolidin-1-Yl)benzamide Length = 392 Back     alignment and structure
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Ixs Length = 411 Back     alignment and structure
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1 Length = 388 Back     alignment and structure
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1 Length = 433 Back     alignment and structure
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor Length = 406 Back     alignment and structure
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Amk640 Length = 408 Back     alignment and structure
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea) Bace-1 Inhibitors Length = 386 Back     alignment and structure
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean Length = 403 Back     alignment and structure
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor Length = 405 Back     alignment and structure
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor (2) Length = 406 Back     alignment and structure
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0 Length = 411 Back     alignment and structure
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(2, 6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto- Butyramide Length = 405 Back     alignment and structure
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase) Length = 411 Back     alignment and structure
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Aur200 Length = 402 Back     alignment and structure
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)- Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)- Acetamide Length = 405 Back     alignment and structure
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With 2-Amino-3-Methyl-6- ((1s, 2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One Length = 416 Back     alignment and structure
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432 Length = 414 Back     alignment and structure
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An Amino- Ethylene Inhibitor Length = 388 Back     alignment and structure
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor Length = 391 Back     alignment and structure
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic Domain. Length = 389 Back     alignment and structure
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132 Length = 455 Back     alignment and structure
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572 Length = 395 Back     alignment and structure
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph 5.0 Length = 411 Back     alignment and structure
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As Beta Secretase (Bace) Inhibitors Length = 390 Back     alignment and structure
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 5 Length = 402 Back     alignment and structure
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor Length = 433 Back     alignment and structure
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor Length = 412 Back     alignment and structure
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor Length = 455 Back     alignment and structure
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1 Length = 404 Back     alignment and structure
>pdb|2QU2|A Chain A, Bace1 With Compound 1 Length = 415 Back     alignment and structure
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 8c Length = 455 Back     alignment and structure
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor Length = 391 Back     alignment and structure
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 388 Back     alignment and structure
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596 Length = 390 Back     alignment and structure
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h- Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide Length = 412 Back     alignment and structure
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485 Length = 395 Back     alignment and structure
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An Exosite- Binding Antibody Length = 402 Back     alignment and structure
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid(3-Mercapto-Propyl)-Amide Length = 405 Back     alignment and structure
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1 Length = 409 Back     alignment and structure
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid (2-Mercapto-Ethyl)- Amide Length = 405 Back     alignment and structure
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide Length = 405 Back     alignment and structure
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase Length = 389 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 7e-68
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 2e-65
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 4e-59
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 9e-20
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 4e-19
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 8e-18
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 1e-17
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 2e-16
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 2e-16
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 4e-16
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 6e-16
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 4e-15
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 7e-15
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 7e-15
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 8e-15
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 9e-15
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 1e-14
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 1e-14
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 6e-14
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 8e-14
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 9e-14
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 4e-13
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 8e-13
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 1e-12
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 5e-11
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 7e-11
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 2e-10
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 3e-10
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 1e-09
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 2e-09
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 5e-09
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 6e-07
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 8e-06
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 2e-05
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  220 bits (560), Expect = 7e-68
 Identities = 74/388 (19%), Positives = 128/388 (32%), Gaps = 62/388 (15%)

Query: 61  TVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNS----IFNPLLSSSYSPVPCNSPTC 116
             +L+  +P   V +++D      W++C++  S  +      +    S  +   C S   
Sbjct: 24  WANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLSCPA 83

Query: 117 KIKTQDLPVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGP-----------ARPG 165
                       C       ++       +  G L  + + I                P 
Sbjct: 84  -------ASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQ 136

Query: 166 FE-------------DARTTGLMGMNRGSLSFITQMG-----FPKFSYCISGVDSS-GVL 206
           F                 T G+ G+    +S   Q+        +F+ C+S   +S G +
Sbjct: 137 FLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAI 196

Query: 207 LFGDASFAWLKPLSYTPLVRISK-PLPYFDRVAYSVQLEGIKVGSK-VLNLPKSVFIPDH 264
           +FGDA     +  +      ++  PL    +  Y+V++  I++    V  L K       
Sbjct: 197 IFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVG 256

Query: 265 TGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIEST 324
           + +G TM+ + T    L   VY A    F QQ     +V     F       LC+     
Sbjct: 257 STSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPF------GLCF----N 306

Query: 325 GPSLPRLPIVSLMFS---GAEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFV 381
              +   P V L+     G    +SGE L+ +       +  V C    N  +       
Sbjct: 307 SNKINAYPSVDLVMDKPNGPVWRISGEDLMVQA------QPGVTCLGVMNGGMQPRAEIT 360

Query: 382 IGHHHQQNLWVEFDLINSRVGFAEVRCD 409
           +G    +   V FDL  SRVGF+     
Sbjct: 361 LGARQLEENLVVFDLARSRVGFSTSSLH 388
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query419
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.89
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.74
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 93.64
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 91.34
2hs1_A99 HIV-1 protease; ultra-high resolution active site 87.35
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 87.27
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 86.72
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 83.83
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=1e-58  Score=454.61  Aligned_cols=343  Identities=25%  Similarity=0.485  Sum_probs=270.8

Q ss_pred             CCCceEEeeeeeccccccccCCcccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCC
Q 039965           26 KNQTLFFPLKTQALAHYYNYRATANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSS  105 (419)
Q Consensus        26 ~~~~~~~pl~~~~~~~~~~~~~~~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT  105 (419)
                      ...++.+||++...                 +..|+++|.||||||++.|+|||||+++||+|.+|         .+|+|
T Consensus         5 ~~~~~~~pv~~d~~-----------------~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c---------~~Sst   58 (413)
T 3vla_A            5 RPSALVVPVKKDAS-----------------TLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN---------YVSST   58 (413)
T ss_dssp             CCSEEEEEEEECTT-----------------TCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS---------CCCTT
T ss_pred             CCccEEEEeeecCC-----------------CCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC---------CCCCC
Confidence            45678899998863                 45699999999999999999999999999999965         48999


Q ss_pred             cccccCCCCCCCCCCCCCC------CCCCCCCCCCCeeEEec-CCCCeeeeEEEEEEEEeCC---------CCCCCC---
Q 039965          106 YSPVPCNSPTCKIKTQDLP------VPASCDPKGLCRVTLTY-ADLTSTEGNLATETILIGG---------PARPGF---  166 (419)
Q Consensus       106 ~~~~~c~~~~c~~~~~~~~------~~~~c~~~~~~~~~~~Y-~~gs~~~G~~~~D~v~~g~---------~~~~~~---  166 (419)
                      |+.+.|.++.|...++.-.      ....|. ++.|.|.+.| ++++.+.|.+++|+|+++.         ..++++   
T Consensus        59 ~~~v~C~s~~C~~~~~~~~~~c~s~~~~~c~-~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FG  137 (413)
T 3vla_A           59 YRPVRCRTSQCSLSGSIACGDCFNGPRPGCN-NNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFS  137 (413)
T ss_dssp             CEECBTTSHHHHHTTCCEEECCSSCCBTTBC-SSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEE
T ss_pred             cCccCCCcccccccccCCCcccccCCCCCCC-CCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEE
Confidence            9999999999986543100      012343 3579999999 4887899999999999972         234443   


Q ss_pred             ---------CCCCcceeeeccCCCCchhhhhcC-----CeeEEeecCC-CCCceEEeCCCCcc------CCCC-cccccc
Q 039965          167 ---------EDARTTGLMGMNRGSLSFITQMGF-----PKFSYCISGV-DSSGVLLFGDASFA------WLKP-LSYTPL  224 (419)
Q Consensus       167 ---------~~~~~~GIlGLg~~~~s~~~ql~~-----~~Fs~~l~~~-~~~G~l~fGg~d~~------~~g~-l~~~p~  224 (419)
                               ....++||||||++.+|+++||..     ++||+||.+. +.+|.|+||++|..      |.|+ +.|+|+
T Consensus       138 c~~~~~~~g~~~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl  217 (413)
T 3vla_A          138 CAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPL  217 (413)
T ss_dssp             EECGGGGTTSCTTCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEEC
T ss_pred             CcccccccCcccccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeec
Confidence                     123579999999999999999775     8999999874 36899999999863      5788 999999


Q ss_pred             cccCCC--CCCCC---CeeEEEEeeeEEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhh-
Q 039965          225 VRISKP--LPYFD---RVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTK-  298 (419)
Q Consensus       225 ~~~~~~--~~~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~-  298 (419)
                      +.....  .++.+   ..+|.|+|++|+|+++.+.++...+..+..+++++||||||++++||+++|++|+++|.+++. 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~  297 (413)
T 3vla_A          218 LTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAA  297 (413)
T ss_dssp             BCCSSCCSSSCCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccccccccccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcc
Confidence            976421  01111   258999999999999999988877766555668899999999999999999999999998875 


Q ss_pred             -ccccccCCCccccccccccccccccCCC--CCCCCCeEEEEEcC--cEEEEcccceeEEecCccCCCCceEEEEEEcCC
Q 039965          299 -GILRVFDDPNFVFQGAMDLCYLIESTGP--SLPRLPIVSLMFSG--AEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSD  373 (419)
Q Consensus       299 -~~~~~~~~~~~~~~~~~~~C~~~~~~~~--~~~~~P~i~f~f~g--~~~~i~~~~y~~~~~~~~~~~~~~~C~~i~~~~  373 (419)
                       .+.+. ...     ..+..|+..++...  ....+|+|+|+|+|  ++|+|++++|+++.      .++..|++|+...
T Consensus       298 ~~~~~~-~~~-----~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~------~~~~~Cl~~~~~~  365 (413)
T 3vla_A          298 RNITRV-ASV-----APFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYI------NDNVVCLGVVDGG  365 (413)
T ss_dssp             TTCCEE-CCC-----TTCSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEE------ETTEEEECEEEEE
T ss_pred             cCCCcC-CCC-----CCCcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEe------CCCcEEEEEEecC
Confidence             22111 111     13579998864210  01378999999997  89999999999985      3467899987754


Q ss_pred             CCCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965          374 LLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR  407 (419)
Q Consensus       374 ~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~  407 (419)
                      ....+.||||+.|||++|+|||++++|||||++.
T Consensus       366 ~~~~~~~IlGd~fl~~~~vvfD~~~~riGfa~~~  399 (413)
T 3vla_A          366 SNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTL  399 (413)
T ss_dssp             SSCSSSEEECHHHHTTEEEEEETTTTEEEEEEEG
T ss_pred             CCcccceeEehhhhcCeEEEEECCCCEEEEEEec
Confidence            3333579999999999999999999999999854
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 419
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 5e-36
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 2e-26
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 1e-21
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 1e-21
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 2e-21
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 2e-21
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 2e-21
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 2e-21
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 5e-21
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 7e-21
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 7e-21
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 8e-21
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 3e-20
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 4e-20
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 7e-20
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 2e-19
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 9e-19
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 4e-18
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 6e-18
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 9e-18
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 8e-17
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 2e-16
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  134 bits (336), Expect = 5e-36
 Identities = 57/379 (15%), Positives = 115/379 (30%), Gaps = 60/379 (15%)

Query: 61  TVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSI----FNPLLSSSYSPVPCNSPTC 116
           T+    G+      +VLD    L W  C        I       LL+++Y    C +P+C
Sbjct: 17  TIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPAPSC 71

Query: 117 KIKTQDLPVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARP------------ 164
                     +    K                G+L+    +                   
Sbjct: 72  G---------SDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLA 122

Query: 165 --------GFEDARTTGLMGMNRGSLSFITQMG-FPKFSYCISGVDSSGVLLFGDASFAW 215
                         +TG+ G+    L+   Q+    K +        +G           
Sbjct: 123 ACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGP 182

Query: 216 LKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSG 275
           +    +T  +  +  +      A+ +    I VG   + +P+          G  M+ + 
Sbjct: 183 VPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGAL-----ATGGVMLSTR 237

Query: 276 TQFTFLLGEVYSALKNEFIQQ--TKGILRVFDDPNFVFQGAMDLCYLIESTGPSL--PRL 331
             +  L  +VY  L + F +    +                  +CY  ++ G +L    +
Sbjct: 238 LPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAV 297

Query: 332 PIVSLMF-SGAEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGI-----EAFVIGHH 385
           P V L    G++ +++G+  +  V           C  F     +        A ++G  
Sbjct: 298 PNVQLGLDGGSDWTMTGKNSMVDVK------QGTACVAFVEMKGVAAGDGRAPAVILGGA 351

Query: 386 HQQNLWVEFDLINSRVGFA 404
             ++  ++FD+   R+GF+
Sbjct: 352 QMEDFVLDFDMEKKRLGFS 370
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query419
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d2nmza199 Human immunodeficiency virus type 1 protease {Huma 83.07
d3ecga199 Human immunodeficiency virus type 2 (HIV-2) protea 81.54
d4fiva_113 Feline immunodeficiency virus (FIV) protease {Feli 81.25
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.2e-54  Score=418.08  Aligned_cols=290  Identities=24%  Similarity=0.372  Sum_probs=235.9

Q ss_pred             ccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 039965           49 ANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLP  124 (419)
Q Consensus        49 ~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~  124 (419)
                      ..+|.++.|.+|+++|+||||||+++|+|||||+++||+|..|    |+.++.|||++|+|++...              
T Consensus        47 ~~~l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~~--------------  112 (370)
T d3psga_          47 DEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS--------------  112 (370)
T ss_dssp             CCTTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEE--------------
T ss_pred             ccccccccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCcccccccccCCCcccccccCC--------------
Confidence            3578999999999999999999999999999999999998876    5678999999999998874              


Q ss_pred             CCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCc------hh
Q 039965          125 VPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLS------FI  185 (419)
Q Consensus       125 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s------~~  185 (419)
                                |.|.+.|++| ++.|.++.|++.+++.+++++             .....+||+|||+...+      ++
T Consensus       113 ----------~~~~~~Yg~G-s~~G~~~~d~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~  181 (370)
T d3psga_         113 ----------QELSITYGTG-SMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVF  181 (370)
T ss_dssp             ----------EEEEEESSSC-EEEEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHH
T ss_pred             ----------CcEEEEeCCc-eEEEEEEEEEEeeeceeeeeeEEEEEeeccCceecccccccccccccCcccccCCCchh
Confidence                      5899999999 689999999999998776544             34567999999987644      22


Q ss_pred             h----h--hcCCeeEEeecCCC-CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCC
Q 039965          186 T----Q--MGFPKFSYCISGVD-SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPK  257 (419)
Q Consensus       186 ~----q--l~~~~Fs~~l~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~  257 (419)
                      .    |  +..+.||+|+.+.. .+|.|+|||+|++ +.+++.|+|+...         .+|.|.++++.++++.+..  
T Consensus       182 ~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~~---------~~w~v~~~~i~v~g~~~~~--  250 (370)
T d3psga_         182 DNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVE---------GYWQITLDSITMDGETIAC--  250 (370)
T ss_dssp             HHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEE---------TTEEEEECEEESSSSEEEC--
T ss_pred             hhhhhhcccccceeEEEeecCCCCCceEecCCcCchhcccceeEEeeccc---------ceEEEEEeeEEeCCeEEec--
Confidence            2    2  34489999998764 6899999999988 8999999999765         4799999999999987753  


Q ss_pred             cccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEE
Q 039965          258 SVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLM  337 (419)
Q Consensus       258 ~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~  337 (419)
                             ..+..++|||||++++||++++++|.+++.+..      ..+..     +..+|+..       +.+|+|+|+
T Consensus       251 -------~~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~------~~~~~-----~~~~C~~~-------~~~P~l~f~  305 (370)
T d3psga_         251 -------SGGCQAIVDTGTSLLTGPTSAIANIQSDIGASE------NSDGE-----MVISCSSI-------DSLPDIVFT  305 (370)
T ss_dssp             -------TTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEE------CTTCC-----EECCGGGG-------GGCCCEEEE
T ss_pred             -------CCCccEEEecCCceEeCCHHHHHHHHHHhCCee------ecCCc-----EEEecccc-------CCCceEEEE
Confidence                   334679999999999999999999987664321      11111     24577765       578999999


Q ss_pred             EcCcEEEEcccceeEEecCccCCCCceEEE-EEEcCC--CCCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965          338 FSGAEMSVSGERLLYRVPGLSRGRDSVYCF-TFGNSD--LLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR  407 (419)
Q Consensus       338 f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~-~i~~~~--~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~  407 (419)
                      |+|.++.|+|++|+++.       ++ .|+ +|...+  ....+.||||++|||++|+|||++++||||||+.
T Consensus       306 f~g~~~~l~~~~yi~~~-------~~-~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~a  370 (370)
T d3psga_         306 IDGVQYPLSPSAYILQD-------DD-SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             ETTEEEEECHHHHEEEC-------SS-CEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             ECCEEEEEChHHeEEEc-------CC-eEEEEEEEcccCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEecC
Confidence            99999999999999973       22 365 365433  2234579999999999999999999999999973
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2 (HIV-2) protease {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]} Back     information, alignment and structure