Citrus Sinensis ID: 039968

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
MPTLWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAGSFVGKLLAQENHDLACDATTERLVLKELRISDRA
ccccccccccccccccccccEEEEEcccEEEEcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccEEEEcccccccc
ccccccEEcEccHHHHcccEEEEEEcccEEEEcccccHHHHHHHHHHHcccccEEEEHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccEEHEHccEEccc
mptlwckipdfdleHIMSRFWVIVSKNETIVLGRCLSMQEieeersgqvggsskadvrKKKKIVTNALNAAKAAMeegilpggggiSLLHAskeldeleitnsSQKIGVQIIQNALKMPVHAIASSAGVAGSFVGKLLAQENHDLACDATTERLVLKELRISDRA
mptlwckipdfdleHIMSRFWVIVSKNETIVLGRCLSMQeieeersgqvggsskadvrkkkKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAGSFVGKLLAQENHdlacdatterlvlkelrisdra
MPTLWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEgilpggggisllHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAGSFVGKLLAQENHDLACDATTERLVLKELRISDRA
***LWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCLSM****************************ALNA***AMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAGSFVGKLLAQENHDLACDATTERLVLKE*******
*PTLWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCLSMQ*I**ER*GQVGGSSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAGSFVGKLLAQENHDLACDATTERLVLKELRISDRA
MPTLWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCLSMQE*****************RKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAGSFVGKLLAQENHDLACDATTERLVLKELRISDRA
**TLWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAGSFVGKLLAQENHDLACDATTERLVLKELRISDRA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPTLWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAGSFVGKLLAQENHDLACDATTERLVLKELRISDRA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query165 2.2.26 [Sep-21-2011]
P29185577 Chaperonin CPN60-1, mitoc N/A no 0.612 0.175 0.669 3e-30
Q05046575 Chaperonin CPN60-2, mitoc N/A no 0.878 0.252 0.466 4e-30
Q43298576 Chaperonin CPN60-2, mitoc N/A no 0.648 0.185 0.633 9e-30
Q05045575 Chaperonin CPN60-1, mitoc N/A no 0.878 0.252 0.455 2e-29
P29197577 Chaperonin CPN60, mitocho yes no 0.878 0.251 0.455 2e-28
Q8L7B5585 Chaperonin CPN60-like 1, no no 0.878 0.247 0.460 4e-28
P35480587 Chaperonin CPN60, mitocho N/A no 0.612 0.172 0.621 3e-27
Q93ZM7572 Chaperonin CPN60-like 2, no no 0.648 0.187 0.513 5e-23
Q2RY28543 60 kDa chaperonin 1 OS=Rh yes no 0.624 0.189 0.476 1e-19
B0SXR2548 60 kDa chaperonin OS=Caul yes no 0.648 0.195 0.467 3e-18
>sp|P29185|CH61_MAIZE Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2 Back     alignment and function desciption
 Score =  130 bits (328), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 85/103 (82%), Gaps = 2/103 (1%)

Query: 48  QVGGSSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKI 107
           ++GG+S+A+V +KK  VT+ALNA KAA+EEGI+PGGG ++LL+ASKELD+L+  N  QKI
Sbjct: 413 KIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGG-VALLYASKELDKLQTANFDQKI 471

Query: 108 GVQIIQNALKMPVHAIASSAGVAGS-FVGKLLAQENHDLACDA 149
           GVQIIQNALK PVH IAS+AGV G+  VGKLL QEN DL  DA
Sbjct: 472 GVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQENTDLGYDA 514
Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.
Zea mays (taxid: 4577)
>sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1 Back     alignment and function description
>sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1 Back     alignment and function description
>sp|Q05045|CH61_CUCMA Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1 Back     alignment and function description
>sp|P29197|CH60A_ARATH Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2 Back     alignment and function description
>sp|Q8L7B5|CH60B_ARATH Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1 Back     alignment and function description
>sp|P35480|CH60_BRANA Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q93ZM7|CH60C_ARATH Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2 Back     alignment and function description
>sp|Q2RY28|CH601_RHORT 60 kDa chaperonin 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL1 PE=3 SV=1 Back     alignment and function description
>sp|B0SXR2|CH60_CAUSK 60 kDa chaperonin OS=Caulobacter sp. (strain K31) GN=groL PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query165
255554262 574 chaperonin-60kD, ch60, putative [Ricinus 0.878 0.252 0.471 5e-29
413934099203 chaperonin 1 [Zea mays] 0.612 0.497 0.669 7e-29
224057686 574 predicted protein [Populus trichocarpa] 0.878 0.252 0.477 1e-28
242039457 577 hypothetical protein SORBIDRAFT_01g02001 0.612 0.175 0.669 1e-28
22242 577 chaperonin hsp60 [Zea mays] 0.612 0.175 0.669 1e-28
309557 577 chaperonin 60 [Zea mays] 0.612 0.175 0.669 1e-28
2506275 577 RecName: Full=Chaperonin CPN60-1, mitoch 0.612 0.175 0.669 1e-28
162458253 577 chaperonin CPN60-1, mitochondrial precur 0.612 0.175 0.669 1e-28
223974475 352 unknown [Zea mays] 0.612 0.286 0.669 2e-28
356575184 571 PREDICTED: chaperonin CPN60-2, mitochond 0.878 0.253 0.466 2e-28
>gi|255554262|ref|XP_002518171.1| chaperonin-60kD, ch60, putative [Ricinus communis] gi|223542767|gb|EEF44304.1| chaperonin-60kD, ch60, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/178 (47%), Positives = 114/178 (64%), Gaps = 33/178 (18%)

Query: 4   LWCKIPDFDLEHIMSRFWVIVSKNETIVLG----------RC--------LSMQEIEEER 45
           L   +   DL+ + S   V VSK++T+VL           RC        LS  + ++E+
Sbjct: 336 LGLNLEKVDLDMLGSCKKVTVSKDDTVVLDGAGEKKDIEERCEQIRSTIELSTSDYDKEK 395

Query: 46  --------SG-----QVGGSSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHAS 92
                   SG     ++GG+S+A+V +KK  VT+ALNA KAA+EEGI+PGGG ++LL+A+
Sbjct: 396 LQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGG-VALLYAT 454

Query: 93  KELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAGS-FVGKLLAQENHDLACDA 149
           KEL++L+  N  QKIGVQIIQNALK PVH IAS+AGV G+  VGKLL Q+N+DL  DA
Sbjct: 455 KELEKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDNYDLGYDA 512

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|413934099|gb|AFW68650.1| chaperonin 1 [Zea mays] Back     alignment and taxonomy information
>gi|224057686|ref|XP_002299295.1| predicted protein [Populus trichocarpa] gi|222846553|gb|EEE84100.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|242039457|ref|XP_002467123.1| hypothetical protein SORBIDRAFT_01g020010 [Sorghum bicolor] gi|241920977|gb|EER94121.1| hypothetical protein SORBIDRAFT_01g020010 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|22242|emb|CAA77645.1| chaperonin hsp60 [Zea mays] Back     alignment and taxonomy information
>gi|309557|gb|AAA33450.1| chaperonin 60 [Zea mays] Back     alignment and taxonomy information
>gi|2506275|sp|P29185.2|CH61_MAIZE RecName: Full=Chaperonin CPN60-1, mitochondrial; AltName: Full=HSP60-1; Flags: Precursor Back     alignment and taxonomy information
>gi|162458253|ref|NP_001105716.1| chaperonin CPN60-1, mitochondrial precursor [Zea mays] gi|22248|emb|CAA78100.1| mitochondrial chaperonin-60 [Zea mays] Back     alignment and taxonomy information
>gi|223974475|gb|ACN31425.1| unknown [Zea mays] Back     alignment and taxonomy information
>gi|356575184|ref|XP_003555722.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like isoform 2 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query165
TAIR|locus:2046590585 HSP60-2 "heat shock protein 60 0.612 0.172 0.553 3.7e-20
TAIR|locus:2076081577 HSP60 "heat shock protein 60" 0.612 0.175 0.543 7.6e-20
TAIR|locus:2087959572 HSP60-3A "heat shock protein 6 0.648 0.187 0.440 2e-15
SGD|S000004249572 HSP60 "Tetradecameric mitochon 0.593 0.171 0.39 7.5e-13
MGI|MGI:96242573 Hspd1 "heat shock protein 1 (c 0.612 0.176 0.401 1e-12
RGD|621314573 Hspd1 "heat shock protein 1 (c 0.612 0.176 0.401 1e-12
UNIPROTKB|P63039573 Hspd1 "60 kDa heat shock prote 0.612 0.176 0.401 1e-12
UNIPROTKB|Q5ZL72573 HSPD1 "60 kDa heat shock prote 0.612 0.176 0.392 4.5e-12
UNIPROTKB|P10809573 HSPD1 "60 kDa heat shock prote 0.612 0.176 0.392 4.5e-12
FB|FBgn0015245573 Hsp60 "Heat shock protein 60" 0.612 0.176 0.401 7.3e-12
TAIR|locus:2046590 HSP60-2 "heat shock protein 60-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 247 (92.0 bits), Expect = 3.7e-20, P = 3.7e-20
 Identities = 57/103 (55%), Positives = 72/103 (69%)

Query:    48 QVGGSSKADVRKKKKIVTNALNAAKAAMEEXXXXXXXXXXXXHASKELDELEITNSSQKI 107
             ++GG+S+ +V +KK  VT+ALNA KAA+EE            +ASKEL++L   N  QKI
Sbjct:   411 KIGGASETEVSEKKDRVTDALNATKAAVEEGIVPGGGVALL-YASKELEKLSTANFDQKI 469

Query:   108 GVQIIQNALKMPVHAIASSAGVAGSFV-GKLLAQENHDLACDA 149
             GVQIIQNALK PV+ IAS+AGV G+ V GKLL Q+N DL  DA
Sbjct:   470 GVQIIQNALKTPVYTIASNAGVEGAVVVGKLLEQDNPDLGYDA 512
GO:0005524 "ATP binding" evidence=IEA;IDA
GO:0005737 "cytoplasm" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;ISS;IDA
GO:0006457 "protein folding" evidence=IEA
GO:0006954 "inflammatory response" evidence=ISS
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005507 "copper ion binding" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
TAIR|locus:2076081 HSP60 "heat shock protein 60" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087959 HSP60-3A "heat shock protein 60-3A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000004249 HSP60 "Tetradecameric mitochondrial chaperonin" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
MGI|MGI:96242 Hspd1 "heat shock protein 1 (chaperonin)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621314 Hspd1 "heat shock protein 1 (chaperonin)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P63039 Hspd1 "60 kDa heat shock protein, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZL72 HSPD1 "60 kDa heat shock protein, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0015245 Hsp60 "Heat shock protein 60" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 8e-30
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 2e-29
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 4e-23
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 2e-21
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 4e-21
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 5e-21
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 7e-21
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 9e-20
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 3e-19
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 3e-17
CHL00093529 CHL00093, groEL, chaperonin GroEL 9e-16
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 9e-13
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 3e-12
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 7e-12
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information 
 Score =  112 bits (284), Expect = 8e-30
 Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 34/166 (20%)

Query: 22  VIVSKNETIVLG----------RC-LSMQEIEE-----------ER----SG-----QVG 50
           V+V+K++T ++G          R     ++IEE           ER    SG     +VG
Sbjct: 320 VVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVG 379

Query: 51  GSSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQ 110
           G+++ ++++KK  V +ALNA +AA+EEGI+PGGG ++LL AS  LD+L+  N  +K+G++
Sbjct: 380 GATEVELKEKKDRVEDALNATRAAVEEGIVPGGG-VALLRASPALDKLKALNGDEKLGIE 438

Query: 111 IIQNALKMPVHAIASSAGVAGS-FVGKLLAQENHDLACDATTERLV 155
           I++ AL+ P+  IA +AGV GS  V K+L   +     DA T   V
Sbjct: 439 IVRRALEAPLRQIAENAGVDGSVVVEKVLESPDG-FGYDAATGEYV 483

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 165
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 99.97
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 99.97
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 99.97
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 99.95
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 99.95
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 99.94
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 99.91
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 99.88
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 99.86
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.11
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.06
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=2.9e-37  Score=275.99  Aligned_cols=162  Identities=37%  Similarity=0.581  Sum_probs=145.3

Q ss_pred             CCCCCCCCCCcCCceeeeEEEEeecceEEEeccccc----------ee-ecc-----------cc---------eEEEcC
Q 039968            3 TLWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCLSM----------QE-IEE-----------ER---------SGQVGG   51 (165)
Q Consensus         3 ~~~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~----------~~-~~~-----------er---------tI~vrG   51 (165)
                      +.|.+++++++++||+|++|++++++|++++.+...          +. .++           +|         ||+|||
T Consensus       304 ~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG  383 (545)
T PRK12852        304 DLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGG  383 (545)
T ss_pred             CcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            457789999999999999999999999999755432          11 100           12         699999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHhccChhHHHHHHHHHHHHhHHHHHHHHhcCCCh
Q 039968           52 SSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAG  131 (165)
Q Consensus        52 ~t~~~l~E~~~~i~Dal~~~~~al~~gvVpGG~G~~e~~~~~~L~~~~~~~~~~~~g~~~~~~AL~~~~~~la~NaG~d~  131 (165)
                      +|+++++|++|+++||+|++|+++++|||||| |++|+++++.|+++...++.+|+|+++|++||+.||++||+|||+|+
T Consensus       384 ~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGG-Ga~e~~~s~~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~  462 (545)
T PRK12852        384 ATEVEVKEKKDRVEDALNATRAAVQEGIVPGG-GVALLRAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEG  462 (545)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc-hHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            99999999999999999999999999999999 99999999999998766788999999999999999999999999999


Q ss_pred             HH-HHHHHhcCCCceeEeecCCcee-eccCccccCC
Q 039968          132 SF-VGKLLAQENHDLACDATTERLV-LKELRISDRA  165 (165)
Q Consensus       132 ~~-v~~l~~~~~~~~G~d~~~~~~~-~~~~gI~dp~  165 (165)
                      .+ +++|++.+++++|||+.+|+++ |++.|||||.
T Consensus       463 ~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~  498 (545)
T PRK12852        463 SIVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPA  498 (545)
T ss_pred             HHHHHHHHhhcCCCeeEeCcCCCcccHHhCcCCcCh
Confidence            99 9999876667899999999999 9999999995

>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 2e-08
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 4e-04
1ss8_A524 Groel Length = 524 5e-04
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 5e-04
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 6e-04
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 6e-04
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 6e-04
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 6e-04
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 6e-04
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 6e-04
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 6e-04
1oel_A547 Conformational Variability In The Refined Structure 6e-04
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 6e-04
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure 
Iteration: 1

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 48  QVGGSSKADVRKKKKIVTNALNAAKAAMEEXXXXXXXXXXXXHASKELDELEITNSSQKI 107
           +VGG ++ +V+++K  V +ALNA +AA++E              +K L+ L   NS Q  
Sbjct: 380 RVGGMTEIEVKERKDRVDDALNATRAAVQE-GIVVGGGVALVQGAKVLEGLSGANSDQDA 438
Query: 108 GVQIIQNALKMPVHAIASSAGVAGSFV-GKLLAQENHDLACDATTE 152
           G+ II+ AL+ P+  IA +AGV G+ V GK+    +     +A TE
Sbjct: 439 GIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTE 484
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 4e-22
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 4e-21
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 1e-19
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 7e-19
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
 Score = 90.7 bits (226), Expect = 4e-22
 Identities = 43/106 (40%), Positives = 69/106 (65%), Gaps = 2/106 (1%)

Query: 48  QVGGSSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKI 107
           +VGG ++ +V+++K  V +ALNA +AA++EGI+ GGG ++L+  +K L+ L   NS Q  
Sbjct: 380 RVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGG-VALVQGAKVLEGLSGANSDQDA 438

Query: 108 GVQIIQNALKMPVHAIASSAGVAGSFV-GKLLAQENHDLACDATTE 152
           G+ II+ AL+ P+  IA +AGV G+ V GK+    +     +A TE
Sbjct: 439 GIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTE 484
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query165
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 97.69
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 97.66
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 97.58
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
Probab=100.00  E-value=8.2e-39  Score=282.98  Aligned_cols=154  Identities=15%  Similarity=0.253  Sum_probs=144.5

Q ss_pred             CCCCCCcCCceeeeEEEE-----eecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cc
Q 039968            7 KIPDFDLEHIMSRFWVIV-----SKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-IL   80 (165)
Q Consensus         7 ~l~~~~~~~LG~a~~v~v-----~~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vV   80 (165)
                      +++++++++||+|++|++     ++++|+||++|...+.+    ||+|||+|+++++|+||+++||||++|+++++| +|
T Consensus       322 ~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~~~~~----tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iV  397 (515)
T 3iyg_E          322 RFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAV----TIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVV  397 (515)
T ss_pred             ccccCCHHHCCcceEEEEEEeccccceEEEEEcCCCCceE----EEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence            578999999999999988     45899999999887778    999999999999999999999999999999999 99


Q ss_pred             cCCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc----CCCceeEeecCCce
Q 039968           81 PGGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ----ENHDLACDATTERL  154 (165)
Q Consensus        81 pGG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~----~~~~~G~d~~~~~~  154 (165)
                      ||| |++|++++.+|++++.. ++++|+|+++|++||+.||++||+|||+|+.+ +.+|++.    ++.++|||+.+|++
T Consensus       398 pGG-Ga~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~  476 (515)
T 3iyg_E          398 YGG-GAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGT  476 (515)
T ss_pred             CCC-cHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCeeeEecCCCcc
Confidence            999 99999999999999876 89999999999999999999999999999999 9999873    35679999999999


Q ss_pred             e-eccCccccCC
Q 039968          155 V-LKELRISDRA  165 (165)
Q Consensus       155 ~-~~~~gI~dp~  165 (165)
                      . |++.|||||+
T Consensus       477 ~d~~~~gI~dp~  488 (515)
T 3iyg_E          477 NDMKHQHVIETL  488 (515)
T ss_pred             cchHhccCEEcH
Confidence            9 9999999995
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 165
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 0.002
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 0.004
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Escherichia coli [TaxId: 562]

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 12/33 (36%), Positives = 24/33 (72%)

Query: 45 RSGQVGGSSKADVRKKKKIVTNALNAAKAAMEE 77
             +VG +++ ++++KK  V +AL+A +AA+EE
Sbjct: 65 AVIKVGAATEVEMKEKKARVEDALHATRAAVEE 97
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query165
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.83
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.75
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 99.73
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.71
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.62
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 99.53
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.37
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 97.62
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 97.49
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 97.35
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 97.34
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 97.1
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.83  E-value=1.4e-20  Score=150.41  Aligned_cols=118  Identities=14%  Similarity=0.108  Sum_probs=104.2

Q ss_pred             EEEcCCcHHHH-HHHHHHHHHHHHHHHHHHhcC-cccCCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHH
Q 039968           47 GQVGGSSKADV-RKKKKIVTNALNAAKAAMEEG-ILPGGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAI  123 (165)
Q Consensus        47 I~vrG~t~~~l-~E~~~~i~Dal~~~~~al~~g-vVpGG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~l  123 (165)
                      .+-+|.+..++ +-.++.++++++.++....+. ++||| |+++++++..|.++..+ ++.+|+++++|++||+.||++|
T Consensus        93 ~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~gg-Ga~e~~~a~~l~~~a~~~~g~~q~~i~~~a~Ale~ip~~L  171 (243)
T d1a6db1          93 LINQNVHPTVISEGYRMASEEAKRVIDEISTKIAYAAGG-GATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRAL  171 (243)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECEEEETT-THHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHhhccccccccCC-CchhHHHHHHHhhhhhccCCHHHHHHHHHHHHhhccCccc
Confidence            34567776655 447888888888888877776 99999 99999999999999876 9999999999999999999999


Q ss_pred             HHhcCCChHH-HHHHHhc---CCCceeEeecCCcee-eccCccccCC
Q 039968          124 ASSAGVAGSF-VGKLLAQ---ENHDLACDATTERLV-LKELRISDRA  165 (165)
Q Consensus       124 a~NaG~d~~~-v~~l~~~---~~~~~G~d~~~~~~~-~~~~gI~dp~  165 (165)
                      |+|+|+|+.+ +.+|+..   ++.++|+|+.+|++. |.+.|||||.
T Consensus       172 aeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i~d~~~~gV~dp~  218 (243)
T d1a6db1         172 AENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPI  218 (243)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEH
T ss_pred             cccCCCChhHHHHHHHHHHhCCCCceeEECcCCEEeehHhcccEecH
Confidence            9999999999 9999763   578899999999999 9999999994
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure