Citrus Sinensis ID: 039982

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRRSSSRSPLVEFDPLERRFSFTKLKADHCGCTSNENEDDHSDTSLHLGLSSEVRRKRKAPKIESTGNDSGSQVASD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccEccc
Coil and Loop (DISEMBL)
MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTgklyefssssMEHILSRYskgidlecqtnrneehgvpelppksaeLNALKDEYARLRLAYMRMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRrsssrsplvefdplerrfsftklkadhcgctsneneddhsdtslhlglssevrrkrkapkiestgndsgsqvasd
Flexible Loop (DISEMBL)
mgrgkieikkienlnsrqvtfskRRNGLLKkakelsvlcdaDVGVIVFSSTGKLYEFSSSSMEHILSRYSKGIDLECQTNRNeehgvpelppksaelNALKDEYARLRLAYMRMNGQELDGLSFKELQQLEHQLSegmlsvkdmKEQVLLEQIRRSRLMEQKAMLENETLRKQMEelrrsssrsplvefdpleRRFSFTKLKADHCGCtsneneddhsdtslhlglssevrrkrkapkiestgndsgsqvasd
Low Complexity Region (SEG)
MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELrrsssrsPLVEFDPLERRFSFTKLKADHCGCTSNENEDDHSDTSLHLGLSSEVRRKRKAPKIESTGNDSGSQVASD
Disordered region (IsUnstruct)
*************************NGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKGIDL***************************EYARLRLAYMRMNGQELD*L***************************************************************************FT******************************************************
Disordered Region (DISOPRED)
MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKG***********************ELNALKDEYARLRLAYMRMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLR***************************************************HL*****************************
Disordered Region (DISEMBL)
MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQ***********PLVEFDPLERRFSFTKLKADHCGC**************HLGLSS*************************
Disordered Region (DISPRO)
*****IEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRRSS************************************SDTSLHL*LSSE************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAExxxxxxxxxxxxxxxxxxxxxELDGLSFKExxxxxxxxxxxxxxxxxxxxxVLLEQIRRSRLMxxxxxxxxxxxxxxxxxxxxxSSRSPLVEFDPLERRFSFTKLKADHCGCTSNENEDDHSDTSLHLGLSSEVRRKRKAPKIESTGNDSGSQVASD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q9M2K8	256	Agamous-like MADS-box pro	yes	no	0.972	0.960	0.528	5e-56
Q38847	268	Agamous-like MADS-box pro	no	no	0.916	0.865	0.456	3e-48
Q39295	264	Agamous-like MADS-box pro	N/A	no	0.865	0.829	0.476	3e-47
A2RVQ5	240	Agamous-like MADS-box pro	no	no	0.592	0.625	0.525	3e-34
Q9XJ66	228	MADS-box transcription fa	yes	no	0.849	0.942	0.450	4e-34
Q0D4T4	249	MADS-box transcription fa	no	no	0.644	0.654	0.459	2e-33
A2YNI2	249	MADS-box transcription fa	N/A	no	0.644	0.654	0.459	2e-33
Q6EP49	240	MADS-box transcription fa	no	no	0.632	0.666	0.470	8e-33
Q9FUY6	265	MADS-box protein JOINTLES	N/A	no	0.869	0.830	0.407	5e-32
O82794	220	MADS-box protein AGL24 OS	no	no	0.833	0.959	0.404	3e-31

>sp|Q9M2K8|AGL18_ARATH Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana GN=AGL18 PE=2 SV=1

 Score =  217 bits (553), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 139/263 (52%), Positives = 175/263 (66%), Gaps = 17/263 (6%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           MGRG+IEIKKIEN+NSRQVTFSKRRNGL+KKAKELS+LCDA+V +I+FSSTGK+Y+FSS 
Sbjct: 1   MGRGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSSV 60

Query: 61  SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAEL-----NALKDEYARLRLAYMRMN 115
            ME ILSRY        +  +  EH +        E      +++K E  RL+LA  R+ 
Sbjct: 61  CMEQILSRYGY-TTASTEHKQQREHQLLICASHGNEAVLRNDDSMKGELERLQLAIERLK 119

Query: 116 GQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQME 175
           G+EL+G+SF +L  LE+QL+E + SVKD K Q+LL QI RSR+ E+KA+ EN+ LRKQ+E
Sbjct: 120 GKELEGMSFPDLISLENQLNESLHSVKDQKTQILLNQIERSRIQEKKALEENQILRKQVE 179

Query: 176 ELRRSSSRSPLVEFDPLERRFSFTKLKAD----HCGCTSNENEDDHSDTSLHLGLSSE-V 230
            L R S   P V    L  R   +  +AD          N+NE+ HSDTSL LGLSS   
Sbjct: 180 MLGRGS--GPKV----LNERPQDSSPEADPESSSSEEDENDNEEHHSDTSLQLGLSSTGY 233

Query: 231 RRKRKAPKIESTGNDSGSQVASD 253
             KRK PKIE   ++SGSQVASD
Sbjct: 234 CTKRKKPKIELVCDNSGSQVASD 256

Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38847|AGL15_ARATH Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1

 Score =  191 bits (486), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/265 (45%), Positives = 169/265 (63%), Gaps = 33/265 (12%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           MGRGKIEIK+IEN NSRQVTFSKRR+GLLKKA+ELSVLCDA+V VIVFS +GKL+E+SS+
Sbjct: 1   MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSST 60

Query: 61  SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELD 120
            M+  LSRY  G       ++ EE          AE++ LKD+ ++L+  ++++ G+ L+
Sbjct: 61  GMKQTLSRY--GNHQSSSASKAEE--------DCAEVDILKDQLSKLQEKHLQLQGKGLN 110

Query: 121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRRS 180
            L+FKELQ LE QL   +++V++ KE++L  Q+  SRL EQ+A LENETLR+Q++ELR  
Sbjct: 111 PLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETLRRQVQELR-- 168

Query: 181 SSRSPLVEFDPLERRFSFTKLKA--------DHCGCTSNENEDDHSDTSLHLGLSSEV-- 230
           S       + P     S+ K  A        +H    S +N D  SDT+L LGL  E   
Sbjct: 169 SFLPSFTHYVP-----SYIKCFAIDPKNALINHDSKCSLQNTD--SDTTLQLGLPGEAHD 221

Query: 231 RR----KRKAPKIESTGNDSGSQVA 251
           RR    +R++P  +S   ++ S+ A
Sbjct: 222 RRTNEGERESPSSDSVTTNTSSETA 246

Transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Acts as both an activator and a repressor of transcription. Binds DNA in a sequence-specific manner in large CArG motif 5'-CC (A/T)8 GG-3'. Participates probably in the regulation of programs active during the early stages of embryo development. Prevents premature perianth senescence and abscission, fruits development and seed desiccation. Stimulates the expression of at least DTA4, LEC2, FUS3, ABI3, AT4G38680/CSP2 and GRP2B/CSP4. Can enhance somatic embryo development in vitro.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39295|AGL15_BRANA Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1

 Score =  188 bits (478), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/252 (47%), Positives = 154/252 (61%), Gaps = 33/252 (13%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           MGRGKIEIK+IEN NSRQVTFSKRR GLLKKA ELSVLCDA+V VIVFS +GKL+EFSS+
Sbjct: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSST 60

Query: 61  SMEHILSRYSK--------GIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYM 112
           SM+  L RY          GI+  C+T   EE           E++ LKDE + L+  ++
Sbjct: 61  SMKKTLLRYGNYQISSDVPGIN--CKTENQEE---------CTEVDLLKDEISMLQEKHL 109

Query: 113 RMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRK 172
            M G+ L+ LS KELQ LE QL+  ++SV++ KE +L +Q+  SRL EQ+A LENETLR+
Sbjct: 110 HMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETLRR 169

Query: 173 QMEELR---------RSSSRSPLVEFDPLERRFSFTKLKADHCGCTSNENEDDHSDTSLH 223
           Q++ELR          + S       DP     S T L   +C       ++ +SDT+L 
Sbjct: 170 QVQELRSFLPSINQHYAPSYIRCFAIDPKNSLLSNTCLGDINCSL-----QNTNSDTTLQ 224

Query: 224 LGLSSEVRRKRK 235
           LGL  E    RK
Sbjct: 225 LGLPGEAHDTRK 236

Probable transcription factor.

Brassica napus (taxid: 3708)

>sp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1

 Score =  145 bits (366), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 110/154 (71%), Gaps = 4/154 (2%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           MGRGKI IK+I N  SRQVTFSKRRNGLLKKAKEL++LCDA+VGVI+FSSTG+LY+FSSS
Sbjct: 1   MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 61  SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELD 120
           SM+ ++ RYS   D + +T+ +E     E+     E   LK +   L+  + +M G+EL 
Sbjct: 61  SMKSVIERYS---DAKGETS-SENDPASEIQFWQKEAAILKRQLHNLQENHRQMMGEELS 116

Query: 121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIR 154
           GLS + LQ LE+QL   +  V+  K+Q+L+E+I+
Sbjct: 117 GLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQ 150

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XJ66|MAD22_ORYSJ MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/233 (45%), Positives = 136/233 (58%), Gaps = 18/233 (7%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           M R + EIK+IE+  +RQVTFSKRR GL KKA+ELSVLCDADV +IVFSSTGKL  F+SS
Sbjct: 1   MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASS 60

Query: 61  SMEHILSRYSK-----GIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMN 115
           SM  I+ +Y+      G   +   + N EH       K A LN    E A LRL  MR  
Sbjct: 61  SMNEIIDKYNTHSNNLGKAEQPSLDLNLEH------SKYAHLNEQLAE-ASLRLRQMR-- 111

Query: 116 GQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAML--ENETLRKQ 173
           G+EL+GLS  ELQQLE  L  G+  V   K+Q  +EQI  S L  + + L  EN  LR Q
Sbjct: 112 GEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQI--SELQRKSSQLAEENMQLRNQ 169

Query: 174 MEELRRSSSRSPLVEFDPLERRFSFTKLKADHCGCTSNENEDDHSDTSLHLGL 226
           + ++  +  +    E    E + S + + A H G + +++ DD SD SL LGL
Sbjct: 170 VSQISPAEKQVVDTENFVTEGQSSESVMTALHSGSSQSQDNDDGSDVSLKLGL 222

Probable transcription factor. May be required for spikelet (rice flower) development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0D4T4|MAD18_ORYSJ MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/185 (45%), Positives = 115/185 (62%), Gaps = 22/185 (11%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSS- 59
           MGRG +++++IEN  +RQVTFSKRRNGLLKKA E+SVLCDADV +IVFS+ GKLYEFSS 
Sbjct: 1   MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSH 60

Query: 60  SSMEHILSRYSKG---------IDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLA 110
           SSME IL RY +           + E Q N  +E+G+            LK +   L+ +
Sbjct: 61  SSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGI------------LKSKLDALQKS 108

Query: 111 YMRMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETL 170
             ++ G++LD L+ KELQQLEHQL   +  ++  K Q+L E I   +  E+    +N  L
Sbjct: 109 QRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVL 168

Query: 171 RKQME 175
           +K ME
Sbjct: 169 QKLME 173

Probable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YNI2|MAD18_ORYSI MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/185 (45%), Positives = 115/185 (62%), Gaps = 22/185 (11%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSS- 59
           MGRG +++++IEN  +RQVTFSKRRNGLLKKA E+SVLCDADV +IVFS+ GKLYEFSS 
Sbjct: 1   MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSH 60

Query: 60  SSMEHILSRYSKG---------IDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLA 110
           SSME IL RY +           + E Q N  +E+G+            LK +   L+ +
Sbjct: 61  SSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGI------------LKSKLDALQKS 108

Query: 111 YMRMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETL 170
             ++ G++LD L+ KELQQLEHQL   +  ++  K Q+L E I   +  E+    +N  L
Sbjct: 109 QRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVL 168

Query: 171 RKQME 175
           +K ME
Sbjct: 169 QKLME 173

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q6EP49|MAD27_ORYSJ MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2

 Score =  140 bits (353), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 115/168 (68%), Gaps = 8/168 (4%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           MGRGKI I++I+N  SRQVTFSKRRNG+ KKAKEL++LCDA+VG+++FSSTG+LYE+SS+
Sbjct: 1   MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSST 60

Query: 61  SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELD 120
           SM+ ++ RY K  D E Q   N      EL     E  +L+ +   L+  + ++ G++L 
Sbjct: 61  SMKSVIDRYGKSKD-EQQAVANPN---SELKFWQREAASLRQQLHNLQENHRQLMGEDLS 116

Query: 121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQI----RRSRLMEQKAM 164
           GL+ KELQ LE+QL   + SV+  K+ VL+++I    R+  L+ Q+ M
Sbjct: 117 GLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENM 164

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FUY6|JOIN_SOLLC MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1

 Score =  137 bits (346), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/260 (40%), Positives = 149/260 (57%), Gaps = 40/260 (15%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           M R KI+IKKI+N  +RQVTFSKRR GL KKA+ELSVLCDADV +I+FSSTGKL+++SSS
Sbjct: 1   MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSS 60

Query: 61  SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKD-EYARL---------RLA 110
           SM+ IL R     DL  +        + +L   S EL  +++  Y+RL         RL 
Sbjct: 61  SMKQILERR----DLHSKN-------LEKLDQPSLELQLVENSNYSRLSKEISEKSHRLR 109

Query: 111 YMRMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETL 170
            MR  G+EL GL+ +ELQQLE  L  G+  V + K   ++ +I + +      M ENE L
Sbjct: 110 QMR--GEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKL 167

Query: 171 RKQMEELRRSSSR-------SPLVEFDPLERRFSFTKLKADHCG------CTSNE---NE 214
           R+Q+ E+  +++        + +V F+P E  F+    +           C S +    +
Sbjct: 168 RQQVMEISNNNNNNNNGYREAGVVIFEP-ENGFNNNNNEDGQSSESVTNPCNSIDPPPQD 226

Query: 215 DDHSDTSLHLGLSSEVRRKR 234
           DD SDTSL LGL++ +R KR
Sbjct: 227 DDSSDTSLKLGLATLLRLKR 246

Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Solanum lycopersicum (taxid: 4081)

>sp|O82794|AGL24_ARATH MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/235 (40%), Positives = 131/235 (55%), Gaps = 24/235 (10%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           M R KI IKKI+N+ +RQVTFSKRR G+ KKA ELSVLCDADV +I+FS+TGKL+EFSSS
Sbjct: 1   MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61  SMEHILSRYSKGIDLECQTNRNEEHGVP--ELPPKSAELNALKDEYARLRLAYMRMNGQE 118
            M  IL RYS        +N N+    P   L  ++  L+ L  E         ++ G++
Sbjct: 61  RMRDILGRYSLH-----ASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGED 115

Query: 119 LDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQI-----RRSRLMEQKAMLENETLRKQ 173
           LDGL+ +ELQ+LE  L  G+  V + K + ++ QI     R S L++     EN+ LR +
Sbjct: 116 LDGLNLEELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKRGSELVD-----ENKRLRDK 170

Query: 174 MEELRRSSSRSPLVEFDPLERRFSFTKLKADHCGCTSNENEDDHSDTSLHLGLSS 228
           +E L R+       +   L+       +  +     S    +D SDTSL LGL S
Sbjct: 171 LETLERA-------KLTTLKEALETESVTTNVSSYDSGTPLEDDSDTSLKLGLPS 218

Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
317106708	254	JHL06B08.10 [Jatropha curcas]	0.992	0.988	0.664	9e-84
225441872	256	PREDICTED: agamous-like MADS-box protein	0.996	0.984	0.649	2e-80
224086966	228	predicted protein [Populus trichocarpa]	0.885	0.982	0.627	3e-78
356498584	276	PREDICTED: agamous-like MADS-box protein	0.952	0.873	0.573	1e-69
421958010	278	MADS-box protein AGL15 [Aquilegia coerul	0.960	0.874	0.543	6e-66
359487231	253	PREDICTED: LOW QUALITY PROTEIN: agamous-	0.952	0.952	0.552	8e-64
296085099	248	unnamed protein product [Vitis vinifera]	0.944	0.963	0.556	2e-63
297739637	181	unnamed protein product [Vitis vinifera]	0.687	0.961	0.692	1e-61
342161739	254	MADS-box protein AGL15 [Dimocarpus longa	0.964	0.960	0.501	4e-57
52789958	254	MADS9 protein [Gossypium hirsutum]	0.928	0.925	0.503	4e-57

>gi|317106708|dbj|BAJ53208.1| JHL06B08.10 [Jatropha curcas]

 Score =  315 bits (808), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 170/256 (66%), Positives = 203/256 (79%), Gaps = 5/256 (1%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           MGRGKIEIKKIENLNSRQVTFSKRR+GL+KKAKELSVLCDA+V VIVFSSTGKLYEFSSS
Sbjct: 1   MGRGKIEIKKIENLNSRQVTFSKRRSGLIKKAKELSVLCDAEVAVIVFSSTGKLYEFSSS 60

Query: 61  SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELD 120
           SME  LSRYSKG DL C  + ++  G  +   +S E+ ALKDE ++LRL  ++M GQ+LD
Sbjct: 61  SMEQTLSRYSKGPDLMCPEHASDYPGTEQ--SQSEEVTALKDEVSKLRLTCLQMMGQQLD 118

Query: 121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRRS 180
           GLSFKELQQLEHQL+EG +SVK+ KE+V+LEQ+++SRL EQKA+ ENETLRKQ+EEL+RS
Sbjct: 119 GLSFKELQQLEHQLTEGRISVKEKKEKVILEQLKKSRLQEQKAIQENETLRKQVEELKRS 178

Query: 181 S--SRSPLVEFDPLERRFSFTKLKADHCGCTSNENEDDHSDTSLHLGLSSEVRRKRKAPK 238
           S  ++S   EF+PLERRF     K+D       E+  D S+TSLHLGLS +V  KRKA K
Sbjct: 179 SAMAKSQFQEFNPLERRFPLASFKSDCFPQGEEEDYGDLSETSLHLGLSYDVHHKRKAAK 238

Query: 239 IESTGNDS-GSQVASD 253
           IE   NDS GSQVAS+
Sbjct: 239 IEPIWNDSAGSQVASE 254

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441872|ref|XP_002278584.1| PREDICTED: agamous-like MADS-box protein AGL15-like [Vitis vinifera]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 167/257 (64%), Positives = 198/257 (77%), Gaps = 5/257 (1%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           MGRGKIEIKKIEN+NSRQVTFSKRR GLLKKAKELSVLCDA+VGVI+FSSTGKLYEFSSS
Sbjct: 1   MGRGKIEIKKIENINSRQVTFSKRRAGLLKKAKELSVLCDAEVGVIIFSSTGKLYEFSSS 60

Query: 61  SMEHILSRYSKGIDLECQT-NRNEEHGVPELPPKS-AELNALKDEYARLRLAYMRMNGQE 118
           SMEH L+RY +G+D E  + +R+ E     +P +S  E+ +LK+E A+L+  Y+RM G+E
Sbjct: 61  SMEHTLTRYGRGLDSELPSLHRSAEVRYSIVPQESQPEVASLKEEVAKLQKGYLRMMGKE 120

Query: 119 LDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELR 178
           LDGLSFKELQ LEH LSEG+LSVKD KEQVLLEQ+++SR+ EQ+AM+ENETLRKQ+EELR
Sbjct: 121 LDGLSFKELQHLEHLLSEGILSVKDKKEQVLLEQLKKSRMHEQRAMMENETLRKQVEELR 180

Query: 179 RSSSRSP--LVEFDPLERRFSFTKLKADHCGCTSNENEDDHSDTSLHLGLSSEVRRKRKA 236
           RSS   P   +E+ P ERR S        C C S  +E   SDTSLHLGL S+   KRK 
Sbjct: 181 RSSRPQPPSFIEYHPPERRQSLQISSKTPCSC-STVDERGGSDTSLHLGLPSDAYLKRKG 239

Query: 237 PKIESTGNDSGSQVASD 253
           PKIE    DS SQVAS+
Sbjct: 240 PKIEPIFIDSESQVASE 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086966|ref|XP_002308020.1| predicted protein [Populus trichocarpa] gi|222853996|gb|EEE91543.1| predicted protein [Populus trichocarpa]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 160/255 (62%), Positives = 193/255 (75%), Gaps = 31/255 (12%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           MGRGKIEIK+IENLNSRQVTFSKRRNGLLKKA+ELSVLCDA+V VIVFSSTGKLYEFSS+
Sbjct: 1   MGRGKIEIKRIENLNSRQVTFSKRRNGLLKKARELSVLCDAEVAVIVFSSTGKLYEFSST 60

Query: 61  SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELD 120
           SMEH LSRY  G+DL+   + +++HG       SAE+NA+KDE ++LRL  ++M GQ+LD
Sbjct: 61  SMEHTLSRYGSGLDLDYNDHPSDDHGAEH--SNSAEVNAVKDELSKLRLTCLQMMGQQLD 118

Query: 121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRRS 180
           GLSFKELQ LEHQLS G+LSVKD KEQ+L++Q+++S++ EQKA LENE+LRKQ+EEL+R 
Sbjct: 119 GLSFKELQHLEHQLSAGILSVKDKKEQMLMDQLKKSKMQEQKATLENESLRKQIEELKRG 178

Query: 181 S---SRSPLVEFDPLERRFSFTKLKADHCGCTSNENEDDHSDTSLHLGLSSEVRRKRKAP 237
           S   +R P                          + E+D SDTSLHLGLSS+V  KRKA 
Sbjct: 179 SRPNNRKP--------------------------QEEEDLSDTSLHLGLSSDVCHKRKAD 212

Query: 238 KIESTGNDSGSQVAS 252
           KIES  NDSGSQVAS
Sbjct: 213 KIESVSNDSGSQVAS 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498584|ref|XP_003518130.1| PREDICTED: agamous-like MADS-box protein AGL18-like [Glycine max]

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 164/286 (57%), Positives = 197/286 (68%), Gaps = 45/286 (15%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDA+V VI+FSSTGKLYEFS++
Sbjct: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSNT 60

Query: 61  SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSA-----ELNALKDEYARLRLAYM--- 112
           SMEH LSRYSKG +     + + E  + ++PP        + N L +E  +LR AY+   
Sbjct: 61  SMEHTLSRYSKGAE-----SDSAEQPI-DVPPTDVMAVEPDTNLLMEEITKLRSAYLFCS 114

Query: 113 --------RMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRL------ 158
                   RM G+ELDGLS KELQQLE+QLSEGM SVKD KEQVL+EQ+R+SR+      
Sbjct: 115 DDILKLCRRMMGKELDGLSLKELQQLENQLSEGMQSVKDKKEQVLVEQLRKSRIQHVDTC 174

Query: 159 ------------MEQKAMLENETLRKQMEELRRSSSRSPLVEFDPLERRFSFTKLKADHC 206
                        EQKAMLENE LRKQ+EE+ ++ ++S  +EF  L+R FS    K+   
Sbjct: 175 VGDFCRGLDFYGQEQKAMLENEVLRKQLEEI-QNKTKSQFLEFSSLDRTFSKNGSKSLF- 232

Query: 207 GCTSNENEDDHSDTSLHLGLSSEVRRKRKAPKIESTGNDSGSQVAS 252
            C S EN  D SDTSL LGLS++  R+RKA K+E   NDSGSQVAS
Sbjct: 233 NCASEEN--DLSDTSLQLGLSTDYGRQRKALKMEPC-NDSGSQVAS 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|421958010|gb|AFX72882.1| MADS-box protein AGL15 [Aquilegia coerulea]

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 143/263 (54%), Positives = 186/263 (70%), Gaps = 20/263 (7%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           MGRGKIEIKKIEN  SRQVTFSKRR GL+KKA+ELS+LCDA+V +I+FS+TGKL+EFSSS
Sbjct: 22  MGRGKIEIKKIENATSRQVTFSKRRAGLIKKAQELSILCDAEVALIIFSNTGKLFEFSSS 81

Query: 61  SMEHILSRYSKGIDLE----CQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNG 116
            M+  LSRY+K  DL      Q +  ++H        S E+  LK+E ++LR+A++RM G
Sbjct: 82  GMKRTLSRYNKSQDLSDNSLVQYDTEKQH--------SKEVTVLKEEVSKLRMAHLRMMG 133

Query: 117 QELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEE 176
           +EL GLSFKELQ LE+QL+EG+LSVK  KEQ+L+EQ+  SRL E +AM+EN +LR+Q+EE
Sbjct: 134 KELTGLSFKELQHLENQLNEGILSVKGRKEQLLMEQLENSRLQEHRAMVENGSLRQQVEE 193

Query: 177 LRRSSSRS-----PLVEFDPLERRFSFTK---LKADHCGCTSNENEDDHSDTSLHLGLSS 228
           LR     +     P +E    ER+ S TK   + + + GC     +   SDTSLHLGLSS
Sbjct: 194 LRSMLPVAELPVRPYLELHHTERKPSHTKHDVISSSNAGCNCIVEKPGESDTSLHLGLSS 253

Query: 229 EVRRKRKAPKIESTGNDSGSQVA 251
           EV RKRKAP+  S  NDSG++ +
Sbjct: 254 EVHRKRKAPERASCSNDSGTETS 276

Source: Aquilegia coerulea

Species: Aquilegia coerulea

Genus: Aquilegia

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487231|ref|XP_003633540.1| PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL15-like [Vitis vinifera]

 Score =  249 bits (636), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 143/259 (55%), Positives = 187/259 (72%), Gaps = 18/259 (6%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           MGRGKIEIKKIEN NSRQVTFSKRR GLLKKA EL++LCDA VGVI+FS+TGKL+EFSS+
Sbjct: 1   MGRGKIEIKKIENANSRQVTFSKRRVGLLKKASELAILCDAQVGVIIFSNTGKLFEFSST 60

Query: 61  SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELD 120
           SM+ I+SRY+K   L+       E+   + P    E++ LKDE  +L+   +++ G++L 
Sbjct: 61  SMKRIISRYNK---LDSSEGALVEYKAEQEP---KEVDILKDEIRKLQTRQLQLLGKDLS 114

Query: 121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELR-- 178
           GLS KELQ LE QL+E +LSVK+ KEQVL+EQ+ +SR+ EQ+A+LENETLR+Q+EELR  
Sbjct: 115 GLSLKELQNLEQQLNESLLSVKERKEQVLMEQLEQSRVQEQRAVLENETLRRQVEELRGL 174

Query: 179 -RSSSR--SPLVEFDPLERRFSFTK---LKADHCGCTSNENEDDHSDTSLHLGLSSEVRR 232
             SS R   P +E+ PLER+ S TK   +  D C       E + SDT+L LGL +E+ R
Sbjct: 175 VPSSDRLVPPFLEYHPLERKDSITKSVVISPDVCDFAV---EREESDTTLQLGLPTEISR 231

Query: 233 KRKAP-KIESTGNDSGSQV 250
           KRKAP K+E+  N+SGS +
Sbjct: 232 KRKAPAKMETRSNNSGSXI 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085099|emb|CBI28594.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 143/257 (55%), Positives = 186/257 (72%), Gaps = 18/257 (7%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           MGRGKIEIKKIEN NSRQVTFSKRR GLLKKA EL++LCDA VGVI+FS+TGKL+EFSS+
Sbjct: 1   MGRGKIEIKKIENANSRQVTFSKRRVGLLKKASELAILCDAQVGVIIFSNTGKLFEFSST 60

Query: 61  SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELD 120
           SM+ I+SRY+K   L+       E+   + P    E++ LKDE  +L+   +++ G++L 
Sbjct: 61  SMKRIISRYNK---LDSSEGALVEYKAEQEP---KEVDILKDEIRKLQTRQLQLLGKDLS 114

Query: 121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELR-- 178
           GLS KELQ LE QL+E +LSVK+ KEQVL+EQ+ +SR+ EQ+A+LENETLR+Q+EELR  
Sbjct: 115 GLSLKELQNLEQQLNESLLSVKERKEQVLMEQLEQSRVQEQRAVLENETLRRQVEELRGL 174

Query: 179 -RSSSR--SPLVEFDPLERRFSFTK---LKADHCGCTSNENEDDHSDTSLHLGLSSEVRR 232
             SS R   P +E+ PLER+ S TK   +  D C       E + SDT+L LGL +E+ R
Sbjct: 175 VPSSDRLVPPFLEYHPLERKDSITKSVVISPDVCDFAV---EREESDTTLQLGLPTEISR 231

Query: 233 KRKAP-KIESTGNDSGS 248
           KRKAP K+E+  N+SGS
Sbjct: 232 KRKAPAKMETRSNNSGS 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739637|emb|CBI29819.3| unnamed protein product [Vitis vinifera]

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/179 (69%), Positives = 150/179 (83%), Gaps = 5/179 (2%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           MGRGKIEIKKIEN+NSRQVTFSKRR GLLKKAKELSVLCDA+VGVI+FSSTGKLYEFSSS
Sbjct: 1   MGRGKIEIKKIENINSRQVTFSKRRAGLLKKAKELSVLCDAEVGVIIFSSTGKLYEFSSS 60

Query: 61  SMEHILSRYSKGIDLECQT-NRNEEHGVPEL----PPKSAELNALKDEYARLRLAYMRMN 115
           SMEH L+RY +G+D E  + +R+ E  +P +         E+ +LK+E A+L+  Y+RM 
Sbjct: 61  SMEHTLTRYGRGLDSELPSLHRSAEFTIPVVFTFEQESQPEVASLKEEVAKLQKGYLRMM 120

Query: 116 GQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQM 174
           G+ELDGLSFKELQ LEH LSEG+LSVKD KEQVLLEQ+++SR+ EQ+AM+ENETLRKQ+
Sbjct: 121 GKELDGLSFKELQHLEHLLSEGILSVKDKKEQVLLEQLKKSRMHEQRAMMENETLRKQV 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|342161739|gb|AEL16646.1| MADS-box protein AGL15 [Dimocarpus longan]

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 130/259 (50%), Positives = 178/259 (68%), Gaps = 15/259 (5%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           MGRGKIEIK+IEN NSRQVTFSKRR GLLKKA+EL++LCDA+V VIVFS+TGKL+EFSSS
Sbjct: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIVFSNTGKLFEFSSS 60

Query: 61  SMEHILSRYSKGIDLECQTNRNEEHGVPELPPK---SAELNALKDEYARLRLAYMRMNGQ 117
            M+  LSRY+K ++         E  V E   +   + E+N LKDE  +L+   +R+ G+
Sbjct: 61  GMKRTLSRYNKCLNF-------TETAVAEHKAEKQNTKEVNGLKDEITKLQAKQLRLLGK 113

Query: 118 ELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEEL 177
           +L+GLS KELQ LE +L++G+L VK+ KEQ+L+EQ+ +SRL EQ+A+LENETLR+Q+EEL
Sbjct: 114 DLNGLSLKELQLLEQELNDGLLLVKEKKEQLLMEQLEQSRLQEQQAVLENETLRRQVEEL 173

Query: 178 R-----RSSSRSPLVEFDPLERRFSFTKLKADHCGCTSNENEDDHSDTSLHLGLSSEVRR 232
           R        S    +E+ PL+RR +     A     + +  +   SDT+L LG  ++   
Sbjct: 174 RGFFPSTDCSVPTFLEYCPLQRRNALMNHSASPDIASDSAIDKGDSDTTLQLGPPTDNYH 233

Query: 233 KRKAPKIESTGNDSGSQVA 251
           KRKAP+ E+  +DS SQ+ 
Sbjct: 234 KRKAPEGETHSHDSRSQLG 252

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52789958|gb|AAU87582.1| MADS9 protein [Gossypium hirsutum]

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 135/268 (50%), Positives = 173/268 (64%), Gaps = 33/268 (12%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           MGRGKIEIK+IEN NSRQVTFSKRR GLLKKAKEL++LCDA+V VI+FS+TGKL+EFSSS
Sbjct: 1   MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAKELAILCDAEVAVIIFSNTGKLFEFSSS 60

Query: 61  SMEHILSRYSKGIDLECQTNRNEEHGVPELP--------PKSAELNALKDEYARLRLAYM 112
            M   +SRY                G PE+           S E + LKDE A+L++  +
Sbjct: 61  GMNKTISRYKSA------------QGSPEIAQVEHKAEKQDSKEADHLKDEIAKLQMKQL 108

Query: 113 RMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRK 172
           ++ G+ L  +S KELQ LE QL+EG+LSVK+ KEQ+L++Q+ +SRL EQ+AMLENETLR+
Sbjct: 109 QLLGKNLTSMSLKELQLLEQQLNEGLLSVKEKKEQLLMQQLEQSRLQEQRAMLENETLRR 168

Query: 173 QMEELR-----RSSSRSPLVEFDPLERRFSFTKLKADH----CGCTSNENEDDHSDTSLH 223
           Q+EELR           P +E  P+ER+ S            C CT    E   SDT+L+
Sbjct: 169 QVEELRGFFPTTDHPIQPYLECYPVERKNSLMSHSIPSPDLTCNCTV---EKGDSDTTLY 225

Query: 224 LGLSSEVRRKRKAPKIESTGNDSGSQVA 251
           LGL S+   KRK P+IES  N+S SQ+ 
Sbjct: 226 LGLPSDY-HKRKKPEIESHSNESESQLG 252

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2082613	256	AGL18 "AGAMOUS-like 18" [Arabi	0.976	0.964	0.530	2.5e-56
TAIR|locus:2177125	268	AGL15 "AGAMOUS-like 15" [Arabi	0.936	0.884	0.453	6.2e-46
UNIPROTKB|Q9XJ66	228	MADS22 "MADS-box transcription	0.869	0.964	0.421	6.5e-35
TAIR|locus:2082618	240	AGL16 "AGAMOUS-like 16" [Arabi	0.656	0.691	0.494	1.7e-34
UNIPROTKB|Q0D4T4	249	MADS18 "MADS-box transcription	0.675	0.686	0.474	2e-33
TAIR|locus:2121924	220	AGL24 "AT4G24540" [Arabidopsis	0.861	0.990	0.416	8.5e-33
TAIR|locus:2121070	228	AGL21 "AT4G37940" [Arabidopsis	0.648	0.719	0.447	7.7e-32
UNIPROTKB|Q10PZ9	257	MADS1 "MADS-box transcription	0.671	0.661	0.451	1.6e-31
UNIPROTKB|Q6EU39	250	MADS6 "MADS-box transcription	0.675	0.684	0.434	1.6e-31
TAIR|locus:2098826	244	AGL13 "AGAMOUS-like 13" [Arabi	0.671	0.696	0.440	2.6e-31

TAIR|locus:2082613 AGL18 "AGAMOUS-like 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 139/262 (53%), Positives = 176/262 (67%)

Query:     1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
             MGRG+IEIKKIEN+NSRQVTFSKRRNGL+KKAKELS+LCDA+V +I+FSSTGK+Y+FSS 
Sbjct:     1 MGRGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSSV 60

Query:    61 SMEHILSRYS-KGIDLECQTNRNEEHGVPELPPKSAEL---NALKDEYARLRLAYMRMNG 116
              ME ILSRY       E +  R  +  +       A L   +++K E  RL+LA  R+ G
Sbjct:    61 CMEQILSRYGYTTASTEHKQQREHQLLICASHGNEAVLRNDDSMKGELERLQLAIERLKG 120

Query:   117 QELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEE 176
             +EL+G+SF +L  LE+QL+E + SVKD K Q+LL QI RSR+ E+KA+ EN+ LRKQ+E 
Sbjct:   121 KELEGMSFPDLISLENQLNESLHSVKDQKTQILLNQIERSRIQEKKALEENQILRKQVEM 180

Query:   177 LXXXXXXXPLVEFDPLERRFSFTKLKADHCGCTS----NENEDDHSDTSLHLGLSSE-VR 231
             L       P V    L  R   +  +AD    +S    N+NE+ HSDTSL LGLSS    
Sbjct:   181 LGRGSG--PKV----LNERPQDSSPEADPESSSSEEDENDNEEHHSDTSLQLGLSSTGYC 234

Query:   232 RKRKAPKIESTGNDSGSQVASD 253
              KRK PKIE   ++SGSQVASD
Sbjct:   235 TKRKKPKIELVCDNSGSQVASD 256

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0048577 "negative regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:2177125 AGL15 "AGAMOUS-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 118/260 (45%), Positives = 167/260 (64%)

Query:     1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
             MGRGKIEIK+IEN NSRQVTFSKRR+GLLKKA+ELSVLCDA+V VIVFS +GKL+E+SS+
Sbjct:     1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSST 60

Query:    61 SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELD 120
              M+  LSRY  G       ++ EE          AE++ LKD+ ++L+  ++++ G+ L+
Sbjct:    61 GMKQTLSRY--GNHQSSSASKAEED--------CAEVDILKDQLSKLQEKHLQLQGKGLN 110

Query:   121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELXXX 180
              L+FKELQ LE QL   +++V++ KE++L  Q+  SRL EQ+A LENETLR+Q++EL   
Sbjct:   111 PLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETLRRQVQELRSF 170

Query:   181 XXXXPLVEFDPLERR-FSFTKLKA--DHCGCTSNENEDDHSDTSLHLGLSSEV--RR--- 232
                     + P   + F+     A  +H    S +N D  SDT+L LGL  E   RR   
Sbjct:   171 LPS--FTHYVPSYIKCFAIDPKNALINHDSKCSLQNTD--SDTTLQLGLPGEAHDRRTNE 226

Query:   233 -KRKAPKIESTGNDSGSQVA 251
              +R++P  +S   ++ S+ A
Sbjct:   227 GERESPSSDSVTTNTSSETA 246

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA;NAS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0060862 "negative regulation of floral organ abscission" evidence=IMP

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0060867 "fruit abscission" evidence=IMP

GO:2000692 "negative regulation of seed maturation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

GO:0071365 "cellular response to auxin stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0048577 "negative regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IDA;TAS

GO:0045487 "gibberellin catabolic process" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB|Q9XJ66 MADS22 "MADS-box transcription factor 22" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 96/228 (42%), Positives = 134/228 (58%)

Query:     1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
             M R + EIK+IE+  +RQVTFSKRR GL KKA+ELSVLCDADV +IVFSSTGKL  F+SS
Sbjct:     1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASS 60

Query:    61 SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELD 120
             SM  I+ +Y+   +      + E+  + +L  + ++   L ++ A   L   +M G+EL+
Sbjct:    61 SMNEIIDKYNTHSN---NLGKAEQPSL-DLNLEHSKYAHLNEQLAEASLRLRQMRGEELE 116

Query:   121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAML--ENETLRKQMEELX 178
             GLS  ELQQLE  L  G+  V   K+Q  +EQI  S L  + + L  EN  LR Q+ ++ 
Sbjct:   117 GLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQI--SELQRKSSQLAEENMQLRNQVSQIS 174

Query:   179 XXXXXXPLVEFDPLERRFSFTKLKADHCGCTSNENEDDHSDTSLHLGL 226
                      E    E + S + + A H G + +++ DD SD SL LGL
Sbjct:   175 PAEKQVVDTENFVTEGQSSESVMTALHSGSSQSQDNDDGSDVSLKLGL 222

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0030154 "cell differentiation" evidence=IMP

TAIR|locus:2082618 AGL16 "AGAMOUS-like 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 88/178 (49%), Positives = 119/178 (66%)

Query:     1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
             MGRGKI IK+I N  SRQVTFSKRRNGLLKKAKEL++LCDA+VGVI+FSSTG+LY+FSSS
Sbjct:     1 MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query:    61 SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELD 120
             SM+ ++ RYS   D + +T+ +E     E+     E   LK +   L+  + +M G+EL 
Sbjct:    61 SMKSVIERYS---DAKGETS-SENDPASEIQFWQKEAAILKRQLHNLQENHRQMMGEELS 116

Query:   121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQI----RRSRLMEQKAMLENETLRKQM 174
             GLS + LQ LE+QL   +  V+  K+Q+L+E+I    R   L+ Q    EN  L K++
Sbjct:   117 GLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQ----ENLDLHKKV 170

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010440 "stomatal lineage progression" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB|Q0D4T4 MADS18 "MADS-box transcription factor 18" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 84/177 (47%), Positives = 111/177 (62%)

Query:     1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSS- 59
             MGRG +++++IEN  +RQVTFSKRRNGLLKKA E+SVLCDADV +IVFS+ GKLYEFSS 
Sbjct:     1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSH 60

Query:    60 SSMEHILSRYSK-GIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQE 118
             SSME IL RY +   D       N E    +      E   LK +   L+ +  ++ G++
Sbjct:    61 SSMEGILERYQRYSFDERAVLEPNTE----DQENWGDEYGILKSKLDALQKSQRQLLGEQ 116

Query:   119 LDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQME 175
             LD L+ KELQQLEHQL   +  ++  K Q+L E I   +  E+    +N  L+K ME
Sbjct:   117 LDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLME 173

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2121924 AGL24 "AT4G24540" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 95/228 (41%), Positives = 127/228 (55%)

Query:     1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
             M R KI IKKI+N+ +RQVTFSKRR G+ KKA ELSVLCDADV +I+FS+TGKL+EFSSS
Sbjct:     1 MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query:    61 SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELD 120
              M  IL RYS         N+  +     L  ++  L+ L  E         ++ G++LD
Sbjct:    61 RMRDILGRYSLHAS---NINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLD 117

Query:   121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELXXX 180
             GL+ +ELQ+LE  L  G+  V + K + ++ QI        + + EN+ LR ++E L   
Sbjct:   118 GLNLEELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKRGSELVDENKRLRDKLETLERA 177

Query:   181 XXXXPLVEFDPLERRFSFTKLKADHCGCTSNENEDDHSDTSLHLGLSS 228
                  L E   LE     T + +   G      EDD SDTSL LGL S
Sbjct:   178 KLTT-LKE--ALETESVTTNVSSYDSGTPL---EDD-SDTSLKLGLPS 218

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0010220 "positive regulation of vernalization response" evidence=IEP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0000060 "protein import into nucleus, translocation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048438 "floral whorl development" evidence=IGI

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEP

GO:0010076 "maintenance of floral meristem identity" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2121070 AGL21 "AT4G37940" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 76/170 (44%), Positives = 115/170 (67%)

Query:     1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
             MGRGKI I++I++  SRQVTFSKRR GL+KKAKEL++LCDA+VG+I+FSSTGKLY+F+SS
Sbjct:     1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query:    61 SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELD 120
             SM+ ++ RY+K   +E Q   N      E+     E   L+ E   L+  + +M G++L+
Sbjct:    61 SMKSVIDRYNKS-KIEQQQLLNP---ASEVKFWQREAAVLRQELHALQENHRQMMGEQLN 116

Query:   121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETL 170
             GLS  EL  LE+Q+   +  ++  KEQ+L ++I+   L +++ ++  E L
Sbjct:   117 GLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQE--LSQKRNLIHQENL 164

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB|Q10PZ9 MADS1 "MADS-box transcription factor 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 80/177 (45%), Positives = 111/177 (62%)

Query:     1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
             MGRGK+E+K+IEN  SRQVTF+KRRNGLLKKA ELS+LCDA+V +I+FS  G+L+EFSSS
Sbjct:     1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSS 60

Query:    61 S-MEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQEL 119
             S M   L RY       C  N +++   PE      E   LK     L+     + G++L
Sbjct:    61 SCMYKTLERYRS-----CNYN-SQDAAAPENEINYQEYLKLKTRVEFLQTTQRNILGEDL 114

Query:   120 DGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEE 176
               LS KEL+QLE+Q+   +  ++  K Q LL+Q+   +  EQ+    N+ LRK+++E
Sbjct:   115 GPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQE 171

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6EU39 MADS6 "MADS-box transcription factor 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 76/175 (43%), Positives = 109/175 (62%)

Query:     1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
             MGRG++E+K+IEN  +RQVTFSKRRNGLLKKA ELSVLCDA+V +I+FSS GKLYEF S+
Sbjct:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query:    61 SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELD 120
              +   L RY       C   ++  + + E      E++ LK ++  L+     + G++L 
Sbjct:    61 GITKTLERYQHC----CYNAQDSNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLG 116

Query:   121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQME 175
              LS KELQQLE QL   +   +  K Q+++EQ+   R  E++    N  L+ ++E
Sbjct:   117 PLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLE 171

GO:0005515 "protein binding" evidence=IPI

GO:0010022 "meristem determinacy" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2098826 AGL13 "AGAMOUS-like 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 78/177 (44%), Positives = 113/177 (63%)

Query:     1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
             MGRGK+E+K+IEN  +RQVTFSKR++GLLKKA ELSVLCDA+V +I+FS+ GKLYEFS+ 
Sbjct:     1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNV 60

Query:    61 SMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELD 120
              +   + RY +     C+ N  +   + +      E+  LK +Y  L   +  + G++L+
Sbjct:    61 GVGRTIERYYR-----CKDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLE 115

Query:   121 GLSFKELQQLEHQLSEGMLSV-KDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEE 176
             G+S KELQ LE QL EG LS  +  K QV++EQ+   R  E++    N  L+ + E+
Sbjct:   116 GMSIKELQTLERQL-EGALSATRKQKTQVMMEQMEELRRKERELGDINNKLKLETED 171

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M2K8	AGL18_ARATH	No assigned EC number	0.5285	0.9723	0.9609	yes	no
Q9XJ66	MAD22_ORYSJ	No assigned EC number	0.4506	0.8498	0.9429	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	4e-43
smart00432	59	smart00432, MADS, MADS domain	8e-34
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	2e-33
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	7e-29
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	4e-21
pfam01486	100	pfam01486, K-box, K-box region	2e-11
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	1e-10

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  140 bits (355), Expect = 4e-43
 Identities = 55/71 (77%), Positives = 62/71 (87%)

Query: 2  GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSS 61
          GRGKIEIK+IEN  +RQVTFSKRRNGLLKKA ELSVLCDA+V +I+FSS+GKLYEFSS S
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 62 MEHILSRYSKG 72
          ME I+ RY K 
Sbjct: 61 MEKIIERYQKT 71

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  116 bits (292), Expect = 8e-34
 Identities = 46/59 (77%), Positives = 51/59 (86%)

Query: 2  GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
          GR KIEIK+IEN  +RQVTFSKRRNGL KKA ELSVLCDA+V +IVFS TGKLYEF+S 
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  114 bits (289), Expect = 2e-33
 Identities = 49/59 (83%), Positives = 52/59 (88%)

Query: 2  GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
          GRGKIEIK+IEN  SRQVTFSKRRNGL KKA ELSVLCDA+V VIVFS +GKLYEF SS
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  104 bits (261), Expect = 7e-29
 Identities = 41/83 (49%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 2  GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSS 61
          GR KI+IK+IEN   R VTFSKRR GL KKA ELS LC A+V VIV+S +GKLY F  SS
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 62 M--EHILSRYSKGIDLECQTNRN 82
               I            +   +
Sbjct: 61 EVEGVISRFEVLSALERKKKAVD 83

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 83.2 bits (206), Expect = 4e-21
 Identities = 40/51 (78%), Positives = 47/51 (92%)

Query: 9  KKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSS 59
          K+IEN ++RQVTFSKRRNG+ KKA ELSVLCDA+V VI+FSSTGKLYE+SS
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 30/83 (36%), Positives = 46/83 (55%)

Query: 94  SAELNALKDEYARLRLAYMRMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQI 153
             E   LK +   L+     + G++L  LS KELQQLE QL  G+  ++  K ++LL QI
Sbjct: 18  QQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLENGLKHIRSRKNELLLNQI 77

Query: 154 RRSRLMEQKAMLENETLRKQMEE 176
              +  E++   EN  LR+++EE
Sbjct: 78  EELQKKERELQEENRNLRQKLEE 100

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 60.4 bits (146), Expect = 1e-10
 Identities = 27/67 (40%), Positives = 41/67 (61%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           +   KI I  I N   R VTFSKR++G+ KKA ELSVL   +V ++V S  G ++ F++ 
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 61  SMEHILS 67
            +E ++ 
Sbjct: 141 KLESVVK 147

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.95
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.93
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.83
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.79
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.48
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	94.6
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	88.95
PRK15422	79	septal ring assembly protein ZapB; Provisional	87.43
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	87.14
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	87.03
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	86.86
PRK13169	110	DNA replication intiation control protein YabA; Re	86.34
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	85.34
PRK10884	206	SH3 domain-containing protein; Provisional	85.09
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	84.31
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	81.45
smart00340	44	HALZ homeobox associated leucin zipper.	81.43
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	81.35

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=2.1e-39  Score=274.88  Aligned_cols=166  Identities=43%  Similarity=0.597  Sum_probs=132.5

Q ss_pred             CCCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccch--hhhhhhhhcccchhhhh
Q 039982            1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSS--MEHILSRYSKGIDLECQ   78 (253)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~s--m~~iieRY~~~~~~~~~   78 (253)
                      |||+||+|+||+|.++|||||+|||+||||||+||||||||+||||||||+|++|+|++++  |..|++||.........
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999998865  99999999987662211


Q ss_pred             cccCCCCCC---------------CCC--CcchHHHHHHHHHHHHHHH---HHHHhcCCCCCCCCH-HHHHHHHHHHHHH
Q 039982           79 TNRNEEHGV---------------PEL--PPKSAELNALKDEYARLRL---AYMRMNGQELDGLSF-KELQQLEHQLSEG  137 (253)
Q Consensus        79 ~~~~~~~~~---------------~~l--q~~~~e~~kLk~ei~~Lq~---~~r~l~GedL~~Ls~-~EL~~LE~~Le~s  137 (253)
                      .........               +..  +....+...++...+.++.   ..+++.|++|.+++. .+|..++.+|+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            111111100               000  1123445566666776654   488999999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 039982          138 MLSVKDMKEQVLLEQIR-RSRLMEQKAMLE  166 (253)
Q Consensus       138 L~~IR~rK~qll~~qi~-~Lk~Ke~~l~ee  166 (253)
                      +..+|..+...+.+++. .++.++..+.++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSNFQVLQEKEKSLEAE  190 (195)
T ss_pred             hcCCCCCCCcCCcchhhhhhcccchhcccc
Confidence            99999999999988887 555555554443

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=5.6e-34  Score=207.56  Aligned_cols=73  Identities=75%  Similarity=1.114  Sum_probs=71.5

Q ss_pred             CCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhhhhcccch
Q 039982            2 GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKGID   74 (253)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iieRY~~~~~   74 (253)
                      ||+||+|++|||..+|+|||+||+.||||||+||||||||+||||||||+|++|+|+++++++||+||...++
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~   73 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSG   73 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999998876

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=7.9e-31  Score=193.70  Aligned_cols=73  Identities=59%  Similarity=0.864  Sum_probs=70.2

Q ss_pred             CCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccch-hhhhhhhhcccch
Q 039982            2 GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSS-MEHILSRYSKGID   74 (253)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~s-m~~iieRY~~~~~   74 (253)
                      ||+||+|++|+|..+|+|||+|||.||||||+||||||||+||+|||||+|+++.|++++ +..+|+||...+.
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~   74 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSA   74 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCH
Confidence            899999999999999999999999999999999999999999999999999999988755 9999999998877

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=7.2e-30  Score=175.97  Aligned_cols=59  Identities=78%  Similarity=1.141  Sum_probs=57.5

Q ss_pred             CCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccc
Q 039982            2 GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS   60 (253)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~   60 (253)
                      ||+||+|++|+|..+|++||+||+.||+|||+||||||||+||+|||||+|++|.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999998864

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.95  E-value=3.1e-29  Score=172.94  Aligned_cols=59  Identities=83%  Similarity=1.177  Sum_probs=57.4

Q ss_pred             CCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccc
Q 039982            2 GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS   60 (253)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~   60 (253)
                      ||+||+|++|+|...|++||+|||.||+|||+||||||||+||+|||||+|+++.|+++
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999998863

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.93  E-value=8e-28  Score=160.66  Aligned_cols=51  Identities=65%  Similarity=1.006  Sum_probs=47.1

Q ss_pred             EEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCccccccc
Q 039982            9 KKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSS   59 (253)
Q Consensus         9 krIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s   59 (253)
                      |+|+|.+.|++||+|||.||||||.||||||||+||||||||+|++|.|||
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999986

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.83  E-value=2.5e-20  Score=142.44  Aligned_cols=85  Identities=35%  Similarity=0.514  Sum_probs=82.5

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982           91 PPKSAELNALKDEYARLRLAYMRMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETL  170 (253)
Q Consensus        91 q~~~~e~~kLk~ei~~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L  170 (253)
                      +.++.++++|+.+++.|+..+|+++|+||++|+++||++||++|+.+|.+||+||+++|+++|+.|++|+..|.++|..|
T Consensus        15 e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L   94 (100)
T PF01486_consen   15 EELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQL   94 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 039982          171 RKQME  175 (253)
Q Consensus       171 ~~~~~  175 (253)
                      +.++.
T Consensus        95 ~~~~~   99 (100)
T PF01486_consen   95 RQKIE   99 (100)
T ss_pred             HHHhc
Confidence            99885

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.79  E-value=2.8e-20  Score=162.84  Aligned_cols=67  Identities=45%  Similarity=0.674  Sum_probs=62.8

Q ss_pred             CCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhhh
Q 039982            2 GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSR   68 (253)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iieR   68 (253)
                      ||.||+|.+|||+..|.|||||||.||||||+|||||.+.+|-|+|.|.+|-+|.|+.+.++-||.-
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s  129 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITS  129 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccc
Confidence            7999999999999999999999999999999999999999999999999999999998776666643

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.48  E-value=1.4e-14  Score=132.46  Aligned_cols=67  Identities=40%  Similarity=0.565  Sum_probs=62.9

Q ss_pred             CCCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhh
Q 039982            1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILS   67 (253)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iie   67 (253)
                      |||+||.|..|+|+.+|.|||+||+.||+|||+||+||.+.+|.|+|.|.+|+++.|+.+..+.|+.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~  147 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK  147 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccc
Confidence            7899999999999999999999999999999999999999999999999999999999876665554

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=94.60  E-value=0.41  Score=34.26  Aligned_cols=51  Identities=24%  Similarity=0.322  Sum_probs=37.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982          122 LSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEEL  177 (253)
Q Consensus       122 Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~  177 (253)
                      ++++.|.+||..+..++..|..     |..+++.|+.+-..|.++|..|+.....+
T Consensus         1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~~L   51 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENEQL   51 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            4788999999999999999864     45567888888666666666666665544

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.95  E-value=4  Score=28.89  Aligned_cols=51  Identities=18%  Similarity=0.281  Sum_probs=35.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982          122 LSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEEL  177 (253)
Q Consensus       122 Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~  177 (253)
                      +|++=|.+||..+..++.-|     .||.-+|++|+.|...|..|-..++...+++
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~reaL   51 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREAL   51 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence            46777888888888888776     4667777888877776666655555554444

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=87.43  E-value=7  Score=28.37  Aligned_cols=43  Identities=14%  Similarity=0.261  Sum_probs=32.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982          122 LSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENET  169 (253)
Q Consensus       122 Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~  169 (253)
                      +|++=|.+||..+..++..|-     ||.-+|++|+.|-..|.+++..
T Consensus         1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            577789999999999998874     6666778888876666665444

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=87.14  E-value=1.6  Score=29.80  Aligned_cols=27  Identities=30%  Similarity=0.291  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982          147 QVLLEQIRRSRLMEQKAMLENETLRKQ  173 (253)
Q Consensus       147 qll~~qi~~Lk~Ke~~l~eeN~~L~~~  173 (253)
                      +.|.++|.+|..+...|+.||..|+..
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~~   43 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQN   43 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467788888888888888888888774

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=87.03  E-value=7.1  Score=27.34  Aligned_cols=52  Identities=25%  Similarity=0.316  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982          126 ELQQLEHQLSEGMLSVKDMKEQ--VLLEQIRRSRLMEQKAMLENETLRKQMEEL  177 (253)
Q Consensus       126 EL~~LE~~Le~sL~~IR~rK~q--ll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~  177 (253)
                      +|+.||..|+.-+.....-+.+  ++.++...++..-..|.+.|..-+.+|+.+
T Consensus         1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam   54 (65)
T TIGR02449         1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM   54 (65)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999888877665543  666666666666666666666666666654

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=86.86  E-value=5.5  Score=30.66  Aligned_cols=51  Identities=33%  Similarity=0.533  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039982          124 FKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRR  179 (253)
Q Consensus       124 ~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~~  179 (253)
                      ++.+.+||++|..-+..|.+-|.+     +..|-..-..|.-||..|+..+.+...
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK~~-----~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELKKQ-----LQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356788888888888777776644     456666667777788888887776643

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=86.34  E-value=5.9  Score=30.67  Aligned_cols=49  Identities=31%  Similarity=0.428  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982          124 FKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEEL  177 (253)
Q Consensus       124 ~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~  177 (253)
                      ++.+.+||++|...+..+.+-|.+     +..|-..-..|.-||..||..+.+.
T Consensus         7 fd~l~~le~~l~~l~~el~~LK~~-----~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALKKQ-----LAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467889999999888888777655     4666677778888888888888775

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=85.34  E-value=1.7  Score=33.58  Aligned_cols=25  Identities=28%  Similarity=0.310  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982          153 IRRSRLMEQKAMLENETLRKQMEEL  177 (253)
Q Consensus       153 i~~Lk~Ke~~l~eeN~~L~~~~~~~  177 (253)
                      +..|++|.+.|+|||+.|+-|++-+
T Consensus        74 ~~rlkkk~~~LeEENNlLklKievL   98 (108)
T cd07429          74 VLRLKKKNQQLEEENNLLKLKIEVL   98 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778889999999999998754

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=85.09  E-value=18  Score=31.17  Aligned_cols=77  Identities=9%  Similarity=0.159  Sum_probs=42.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982           93 KSAELNALKDEYARLRLAYMRMNGQELDGLSFKELQQLEHQLSEGMLSVK--DMKEQVLLEQIRRSRLMEQKAMLENETL  170 (253)
Q Consensus        93 ~~~e~~kLk~ei~~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR--~rK~qll~~qi~~Lk~Ke~~l~eeN~~L  170 (253)
                      ....+..++++++.++.++..+.++ .+    .....+.+.++.+-..|.  ...++-|.+++..++.+...|..+|..+
T Consensus        91 ~~~rlp~le~el~~l~~~l~~~~~~-~~----~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~  165 (206)
T PRK10884         91 LRTRVPDLENQVKTLTDKLNNIDNT-WN----QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK  165 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677788888888888877766543 11    333344444443333333  2333344555555555555555555555


Q ss_pred             HHHH
Q 039982          171 RKQM  174 (253)
Q Consensus       171 ~~~~  174 (253)
                      +..+
T Consensus       166 ~~~~  169 (206)
T PRK10884        166 QRTI  169 (206)
T ss_pred             HHHH
Confidence            5443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=84.31  E-value=15  Score=28.96  Aligned_cols=31  Identities=19%  Similarity=0.211  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982          147 QVLLEQIRRSRLMEQKAMLENETLRKQMEEL  177 (253)
Q Consensus       147 qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~  177 (253)
                      ..|..+|..++++...|...|..|..+|+.+
T Consensus       101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l  131 (132)
T PF07926_consen  101 EQLEKELSELEQRIEDLNEQNKLLHDQLESL  131 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4678999999999999999999999998754

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=81.45  E-value=3.3  Score=28.47  Aligned_cols=32  Identities=22%  Similarity=0.258  Sum_probs=26.3

Q ss_pred             HhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 039982          113 RMNGQELDGLSFKELQQLEHQLSEGMLSVKDM  144 (253)
Q Consensus       113 ~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~r  144 (253)
                      +..|+||+.||++||..--..|+.-+.+++.-
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~   43 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEAA   43 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            56799999999999998887777777777654

The function of this family is unknown.

>smart00340 HALZ homeobox associated leucin zipper

Probab=81.43  E-value=5.1  Score=25.53  Aligned_cols=31  Identities=23%  Similarity=0.190  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 039982          153 IRRSRLMEQKAMLENETLRKQMEELRRSSSR  183 (253)
Q Consensus       153 i~~Lk~Ke~~l~eeN~~L~~~~~~~~~~~~~  183 (253)
                      .+.|++=-..|-+||.+|+++++++......
T Consensus         7 Ce~LKrcce~LteeNrRL~ke~~eLralk~~   37 (44)
T smart00340        7 CELLKRCCESLTEENRRLQKEVQELRALKLS   37 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            4678888888999999999999999876433

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=81.35  E-value=0.14  Score=28.39  Aligned_cols=13  Identities=31%  Similarity=0.836  Sum_probs=10.4

Q ss_pred             EEEEEecCCcccc
Q 039982           44 GVIVFSSTGKLYE   56 (253)
Q Consensus        44 alIifS~~gkl~e   56 (253)
                      .+.+|||.|+||.
T Consensus         4 ~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    4 SITTFSPDGRLFQ   16 (23)
T ss_dssp             STTSBBTTSSBHH
T ss_pred             CceeECCCCeEEe
Confidence            3458999999974

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	253
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		2e-16
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		5e-16
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		5e-16
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		1e-15
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		1e-15
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		1e-14
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		6e-12
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		7e-09
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		3e-08

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 56/70 (80%)
Query: 1  MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
          MGR KI+I +I +  +RQVTF+KR+ GL+KKA ELSVLCD ++ +I+F+S  +L++++S+
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 SMEHILSRYS 70
           M+ +L +Y+
Sbjct: 61 DMDRVLLKYT 70

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 56/69 (81%)
Query: 2  GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSS 61
          GR KI+I +I +  +RQVTF+KR+ GL+KKA ELSVLCD ++ +I+F+S+ KL++++S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 MEHILSRYS 70
          M+ +L +Y+
Sbjct: 61 MDKVLLKYT 69

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 56/69 (81%)
Query: 2  GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSS 61
          GR KI+I +I +  +RQVTF+KR+ GL+KKA ELSVLCD ++ +I+F+S+ KL++++S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 MEHILSRYS 70
          M+ +L +Y+
Sbjct: 61 MDKVLLKYT 69

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 56/69 (81%)
Query: 2  GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSS 61
          GR KI+I +I +  +RQVTF+KR+ GL+KKA ELSVL DA++ +I+F+S+ KL++++S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTD 60
Query: 62 MEHILSRYS 70
          M+ +L +Y+
Sbjct: 61 MDKVLLKYT 69

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 55/69 (79%)
Query: 2  GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSS 61
          GR KI+I +I +  +RQVTF+KR+ GL+KKA ELSVLCD ++ +I+F+S  +L++++S+ 
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 60
Query: 62 MEHILSRYS 70
          M+ +L +Y+
Sbjct: 61 MDRVLLKYT 69

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 56/69 (81%)
Query: 2  GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSS 61
          GR KI+I +I +  +RQVTF+KR+ GL+KKA ELSVLCD ++ +I+F+S+ KL++++S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 MEHILSRYS 70
          M+ +L +Y+
Sbjct: 61 MDKVLLKYT 69

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 46/66 (69%)
Query: 3  RGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSM 62
          R KIEIK IEN   R VTFSKR++G++KKA ELSVL    V ++V S TG +Y FS+   
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKF 77
Query: 63 EHILSR 68
          E I+++
Sbjct: 78 EPIVTQ 83

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 8/94 (8%)
Query: 2  GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSS 61
          GR KI+++ I+N   R  TFSKR+ G++KKA ELS L    V ++V S TG +Y F++  
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 69
Query: 62 MEH-ILSRYSKGIDLECQTNRNEEHGVPELPPKS 94
          ++  I S   K +   C  +       P+ PP+S
Sbjct: 70 LQPMITSETGKALIQTCLNS-------PDSPPRS 96

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 2  GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSS 61
          GR KI+++ I+N   R  TFSKR+ G++KKA ELS L    V ++V S TG +Y F++  
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 70
Query: 62 MEHILS 67
          ++ +++
Sbjct: 71 LQPMIT 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	1e-39
1hbx_A	92	SRF, serum response factor; gene regulation, trans	2e-39
1egw_A	77	MADS box transcription enhancer factor 2, polypept	3e-39
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	2e-38
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	2e-38
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  131 bits (331), Expect = 1e-39
 Identities = 34/70 (48%), Positives = 57/70 (81%)

Query: 2  GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSS 61
          GR KI+I +I +  +RQVTF+KR+ GL+KKA ELSVLCD ++ +I+F+S+ KL++++S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 MEHILSRYSK 71
          M+ +L +Y++
Sbjct: 61 MDKVLLKYTE 70

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  131 bits (331), Expect = 2e-39
 Identities = 28/80 (35%), Positives = 48/80 (60%)

Query: 1  MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           GR KI+++ I+N   R  TFSKR+ G++KKA ELS L    V ++V S TG +Y F++ 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 SMEHILSRYSKGIDLECQTN 80
           ++ +++  +    ++   N
Sbjct: 70 KLQPMITSETGKALIQTCLN 89

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  130 bits (328), Expect = 3e-39
 Identities = 34/70 (48%), Positives = 57/70 (81%)

Query: 2  GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSS 61
          GR KI+I +I +  +RQVTF+KR+ GL+KKA ELSVLCD ++ +I+F+S+ KL++++S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 MEHILSRYSK 71
          M+ +L +Y++
Sbjct: 61 MDKVLLKYTE 70

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  129 bits (325), Expect = 2e-38
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 1  MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           GR KI+++ I+N   R  TFSKR+ G++KKA ELS L    V ++V S TG +Y F++ 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 SMEHILSRYSKGIDLECQTNRNEEHGVPE 89
           ++ +++  +    ++   N  +     +
Sbjct: 69 KLQPMITSETGKALIQTCLNSPDSPPRSD 97

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  128 bits (324), Expect = 2e-38
 Identities = 36/84 (42%), Positives = 51/84 (60%)

Query: 1  MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
            R KIEIK IEN   R VTFSKR++G++KKA ELSVL    V ++V S TG +Y FS+ 
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61 SMEHILSRYSKGIDLECQTNRNEE 84
            E I+++      ++   N  ++
Sbjct: 76 KFEPIVTQQEGRNLIQACLNAPDD 99

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 5e-07
 Identities = 41/276 (14%), Positives = 78/276 (28%), Gaps = 72/276 (26%)

Query: 1   MGRGKIEIKKIENLNSRQVTFSKRRNGLL--------KKAKELSVLCD-----ADVGVIV 47
               K+ I  I+    R +      N LL        K     ++ C          V  
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 48  FSSTGKLYEFSSSSMEHILS-RYSKGIDLECQTNRNEEHGVPELPPKSAELN-------- 98
           F S       S       L+    K + L+    R ++     LP +    N        
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-----LPREVLTTNPRRLSIIA 334

Query: 99  -ALKDEYAR----LRLAYMRMN---GQELDGLSFKELQQLEHQLSEGMLSVKDMK--EQV 148
            +++D  A       +   ++       L+ L   E +++  +LS  +           +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--VFP-PSAHIPTIL 391

Query: 149 LLEQIRRSRLMEQKAMLENETLRKQMEELRRSSSRSPLVEFDPLERRFSF------TKLK 202
           L      S +      +    +   + +L + S    LVE  P E   S        K+K
Sbjct: 392 L------SLIWFD---VIKSDVMVVVNKLHKYS----LVEKQPKESTISIPSIYLELKVK 438

Query: 203 ADHCGCTSNENEDDHSDTSLHLGLSSEVRRKRKAPK 238
            ++             + +LH  +       +    
Sbjct: 439 LEN-------------EYALHRSIVDHYNIPKTFDS 461

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	91.13
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	88.27
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	84.4
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	83.83
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	81.86
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	81.85
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	81.33

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=5.8e-40  Score=236.70  Aligned_cols=73  Identities=47%  Similarity=0.845  Sum_probs=70.1

Q ss_pred             CCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhhhhcccch
Q 039982            2 GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKGID   74 (253)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iieRY~~~~~   74 (253)
                      ||+||+|++|||.++|||||+|||+||||||+|||||||||||||||||+||+|+|+|++|++||+||+.+++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999998765

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=2.8e-39  Score=238.74  Aligned_cols=73  Identities=47%  Similarity=0.845  Sum_probs=71.7

Q ss_pred             CCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhhhhcccch
Q 039982            2 GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKGID   74 (253)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iieRY~~~~~   74 (253)
                      ||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|..||+||+.+++
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~   73 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE   73 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCS
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999998776

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=1.2e-37  Score=233.84  Aligned_cols=72  Identities=49%  Similarity=0.654  Sum_probs=69.9

Q ss_pred             CCCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhhhhccc
Q 039982            1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKG   72 (253)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iieRY~~~   72 (253)
                      |||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+||+|+|+|++|..||+||...
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~   87 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR   87 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999643

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=1.8e-37  Score=229.92  Aligned_cols=70  Identities=39%  Similarity=0.593  Sum_probs=68.7

Q ss_pred             CCCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhhhhc
Q 039982            1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYS   70 (253)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iieRY~   70 (253)
                      |||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|..||++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999874

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=7.1e-37  Score=231.04  Aligned_cols=69  Identities=39%  Similarity=0.595  Sum_probs=68.0

Q ss_pred             CCCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhhhh
Q 039982            1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRY   69 (253)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iieRY   69 (253)
                      |||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|..||+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999984

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=91.13  E-value=1.9  Score=30.49  Aligned_cols=43  Identities=14%  Similarity=0.261  Sum_probs=33.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982          122 LSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENET  169 (253)
Q Consensus       122 Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~  169 (253)
                      +|++=|.+||..+..++..|-     +|..+|++|+.|-..|.++|..
T Consensus         3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN~~L~~e~~e   45 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN   45 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            678889999999999998774     5666778888877776665555

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=88.27  E-value=4  Score=26.94  Aligned_cols=53  Identities=21%  Similarity=0.295  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982          120 DGLSFKELQQLEHQLSEGMLSVKD--MKEQVLLEQIRRSRLMEQKAMLENETLRK  172 (253)
Q Consensus       120 ~~Ls~~EL~~LE~~Le~sL~~IR~--rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~  172 (253)
                      +..++.|..++.+.|-.+=.+|..  +-+.-+.+++..|+++.+.|+.||..|+.
T Consensus         8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A            8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            356888888888888877766653  44556789999999999999999999974

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=84.40  E-value=1.9  Score=44.42  Aligned_cols=26  Identities=19%  Similarity=0.243  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982          153 IRRSRLMEQKAMLENETLRKQMEELR  178 (253)
Q Consensus       153 i~~Lk~Ke~~l~eeN~~L~~~~~~~~  178 (253)
                      -+.|+.|...|.+||..|++++.++.
T Consensus      1018 ~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1018 KHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36888999999999999999988775

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=83.83  E-value=1.7  Score=30.10  Aligned_cols=26  Identities=31%  Similarity=0.307  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982          147 QVLLEQIRRSRLMEQKAMLENETLRK  172 (253)
Q Consensus       147 qll~~qi~~Lk~Ke~~l~eeN~~L~~  172 (253)
                      +.|.++|.+|..|...|+.||..|+.
T Consensus        18 evLKe~I~EL~e~~~qLE~EN~~Lk~   43 (78)
T 1dip_A           18 EILKEQIRELVEKNSQLERENTLLKT   43 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888888888888888888877

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=81.86  E-value=6.3  Score=25.56  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039982          139 LSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRR  179 (253)
Q Consensus       139 ~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~~  179 (253)
                      .+-|.||.    ..++.|..++..|..+|..|..++..+..
T Consensus        14 ~rSR~RKk----~~~~~LE~~v~~L~~eN~~L~~~~~~L~~   50 (55)
T 1dh3_A           14 RESRRKKK----EYVKSLENRVAVLENQNKTLIEELKALKD   50 (55)
T ss_dssp             HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466665    44699999999999999999999988754

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=81.85  E-value=5.3  Score=24.46  Aligned_cols=26  Identities=19%  Similarity=0.077  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982          149 LLEQIRRSRLMEQKAMLENETLRKQM  174 (253)
Q Consensus       149 l~~qi~~Lk~Ke~~l~eeN~~L~~~~  174 (253)
                      |.....+|..+...|+.||..||+.+
T Consensus        15 le~~naeLEervstLq~EN~mLRqvl   40 (42)
T 2oqq_A           15 LENKNSELEERLSTLQNENQMLRHIL   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            44557888999999999999999876

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=81.33  E-value=6.2  Score=26.33  Aligned_cols=39  Identities=13%  Similarity=0.191  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039982          137 GMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRR  179 (253)
Q Consensus       137 sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~~  179 (253)
                      +-.+.|.||.+    .+..|..+...|..+|..|..++..+..
T Consensus        20 AArrsR~RK~~----~~~~Le~~v~~L~~eN~~L~~ev~~Lr~   58 (63)
T 2dgc_A           20 AARRSRARKLQ----RMKQLEDKVEELLSKNYHLENEVARLKK   58 (63)
T ss_dssp             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566777754    5699999999999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	3e-36
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	3e-35
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	4e-35

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 3e-36
 Identities = 34/70 (48%), Positives = 57/70 (81%)

Query: 2  GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSS 61
          GR KI+I +I +  +RQVTF+KR+ GL+KKA ELSVLCD ++ +I+F+S+ KL++++S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 MEHILSRYSK 71
          M+ +L +Y++
Sbjct: 61 MDKVLLKYTE 70

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  119 bits (299), Expect = 3e-35
 Identities = 36/83 (43%), Positives = 51/83 (61%)

Query: 2  GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSS 61
           R KIEIK IEN   R VTFSKR++G++KKA ELSVL    V ++V S TG +Y FS+  
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 62

Query: 62 MEHILSRYSKGIDLECQTNRNEE 84
           E I+++      ++   N  ++
Sbjct: 63 FEPIVTQQEGRNLIQACLNAPDD 85

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (298), Expect = 4e-35
 Identities = 28/80 (35%), Positives = 48/80 (60%)

Query: 1  MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSS 60
           GR KI+++ I+N   R  TFSKR+ G++KKA ELS L    V ++V S TG +Y F++ 
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 61

Query: 61 SMEHILSRYSKGIDLECQTN 80
           ++ +++  +    ++   N
Sbjct: 62 KLQPMITSETGKALIQTCLN 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-39  Score=225.12  Aligned_cols=71  Identities=48%  Similarity=0.869  Sum_probs=69.4

Q ss_pred             CCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhhhhccc
Q 039982            2 GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKG   72 (253)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iieRY~~~   72 (253)
                      ||+||+|++|||..+|+|||+|||+||||||+||||||||+||||||||+|++|+|+|+++++||+||..+
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~~   71 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEY   71 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999753

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-36  Score=219.90  Aligned_cols=72  Identities=38%  Similarity=0.567  Sum_probs=70.0

Q ss_pred             CCCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhhhhccc
Q 039982            1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKG   72 (253)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iieRY~~~   72 (253)
                      +||+||+|++|||..+|+|||+|||+||||||+||||||||+||||||||+|++|+|+|++++.||+||...
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999999999999999753

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-36  Score=218.41  Aligned_cols=73  Identities=48%  Similarity=0.620  Sum_probs=70.7

Q ss_pred             CCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhhhhcccch
Q 039982            2 GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKGID   74 (253)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iieRY~~~~~   74 (253)
                      ||+||+|++|+|..+|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+|..||+||.....
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~~~   75 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRNL   75 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhcccH
Confidence            8999999999999999999999999999999999999999999999999999999999999999999987554