Citrus Sinensis ID: 039990

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------122
MRALLVHQGLEETLGDPRSEKKPSKLSNEERSKIKAISSRLEELCKRRTVLGLEKIAGGSTHSATVRRRPPTTCLTSEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMDVALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKSSNNESKFVMHDLVHDLAQWASGDTCFRLDYEFSEDRQSKVFEKVRHCSYIRSRRFAVKDKFKFLDEVENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVGDPSFSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDLQEWEHWEPNRENDEHVQAFSHLRKLSIKRCPKLSGRLPNHLPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSLNEMALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREHLPSSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCPLLENKFKKGKGQEWPKIAHIPSVLIGGKSIHRL
ccEEcccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEcccccccccccccccccccccccccEEccHHHHHHHHHHHHccccccccccEEEEEEEccccHHHHHHHHHHcccccccccccEEEEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccEEEEEcccHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccHHHHHHccccccccccHHHccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccEEccccccEEEcHHHHHHHHHHHccccEEEEcccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHcccccccEEEEEccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccHHcHHHHccccccccccEEEEEccccccHHHHHHHHHcccccccccEEEEEEEccccccccccccccccEEEEEEEccccccccccccccccccEEEEccccccEEEcccccccccccccccccEEEcccccccccccccccccccccccccccEEEEccccccccccccccccccEEEEEccccccccccccccccEEEEccccccccccccccccccEEEEcccccccccccccccccccccEEcccccccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccccccccccccccccccHHHcccccccccccccccEEEEccccccEEEcccccccccccEEEEEcccccccccccccccccccEEEEccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccccccccccccccccccEEEEEccccccccccccccccccccccEEEEEccccccccccccccccccccEEEEEccccccccccccccccccEEEEEccHHHHHHccccccccccccccccEEEEccEEEccc
cHHHHHHcccHHHEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEcccccccccccccccccccccccccEEcccHHHHHHHHHHHcccccccccEEEEEEEccccccHHHHHHHHHcHHHHHcccEEEEEEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHcHHHccccccEEEEEEccHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHcHHccccccccccHHEEEcHcccccHHHHHHHEHHcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEHHHHHHHHHHHHHccEEEEEEcccccccccccccccEEEEEEccccccccccccHHHHHHHccEEcccccccccccccccHHHHHHHHHHcccEEEEEccccEEEEcccccccHHHcccccccHHHHHHEEHcccHHHHHccHcHcccccccEEEccccccHcccccccccHHHHHHHHHccccccHHHHHHHHHcccccccEEEEEEcccccccccHHHHHHHccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEcccccEEEccHHHcccccccccccccEEEccccHHHHHcccccccccccccccccEEEEEccccHHccccccccccccEEEEcccccccccccccccccEEEEcccccEEcccccccccccEEEEcccccccccccccccccccccEEEEcccccHHcccHHHccccccccEEEEcccccccccccccccccccEEEEcccccccccccccccccHHccccccccccccccccccccEEEEccccccccccccccccccccEEEEcccccHccccHcccccccccEEEEccccccccccccccccccccEEEEcccccHccccccccccccccEEEEcccccccccccccccccccEEEEcccHcccccccccccccccEEEEcccccccccccccccccccEEEEcccccHHHccHHcccccccccEEEEccccccccccccccccccccccEEEEEcccccHccccHHHccccccccEEEEcccccccccccccccccccEEEEcccHHHHHHHHcccccccccEEcccEEEEcccEEEcc
MRALLVHQGleetlgdprsekkpsklsneERSKIKAISSRLEELCKRRTVLGlekiaggsthsatvrrrppttcltsepavygrnedkARILDMVlkndpsdaanfrviplvgmggigkTTLAQEVyndkltddfkpkawvcvsddfdILRISKAILESItrsscgltdlnSVQLKLKEAVFKKNKSYELWQALkspfmagapgsriIVTTRSMDVALKmgsgknyelkhlsdddcwSVFLNHafegidtgtqgnfeSTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSKIwdledeieipSVLKLsyhhlpshlkRCFAYCAilpkdyefqEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSRSmfqkssnneskFVMHDLVHDLaqwasgdtcfrldyefsEDRQSKVFEkvrhcsyirsrrfAVKDKFKFLDEVENLRTFLPIFMEDFFIsfcispmvlsdllpkckkLRVLSLekdniaevpisigclkclpEAITSLFNLEILILSYCWCLlklpssignlvnlhhldiegaDRLCELPLGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWsggpvdelrEKNILDMlkphcnikrleiisygstrfpswvgdpsfsnVAVLKlencdrctslpslgqlcslkdlTIVGMSALKSVgseiygegcskpfrslQTLYFEDLQewehwepnrendeHVQAFSHLRKLSikrcpklsgrlpnhlpslEEIVIAGCMHLAvslpslpalctmeidgckrlvcdgpsesksLNEMALCNiskfenwsmenLVRFgfysvdtskdcnaltsltdgmihnnvRLEVLRIIGCHSLKSIAREHLPSSLKEIELEYCEIQQCvlddgenscaspsvlekninnsssstyldleslsvqscpsltrlwssgrlpvtlkciqiedcsnfkvltseCQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNlkslpkglnnlsHLHRRSiqgchnlvslpedalpsnvvdvsiedcdklkaplptgklsslqlltliecpgivffpeeglstnltdleisgdniykplvkwgFDKFSSLRKHCINrcsdavsfpevekgvilptsltlirisdfpklerlsskgfHYLLSLEQLkvsscpnftsfpeagfpssllfldiqgcpllenkfkkgkgqewpkiahipsvliggksihrl
mrallvhqgleetlgdprsekkpsklsneerskikaISSRLEELCKRRTVLglekiaggsthsatvrrrppttcltsepavygrnedKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILesitrsscgltdlnsVQLKLKEAVFKKNKSYELWQALkspfmagapGSRIIVTTRSMDVALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARalggllrskqrvdEWRAILNskiwdledEIEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKSSNNESKFVMHDLVHDLAQWASGDTCFRLDYEFsedrqskvfekvrhcsyirsrrfavkdkfkFLDEVENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSggpvdelreKNILDMLKPHCNIKRLEIISYGSTRFPSWVGDPSFSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDLQEWEHWEPNRENDEHVQAFSHLRKLSIKRCPKLSGRLPNHLPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSLNEMALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREHLPSSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCsdavsfpevekgvilptsltlirisdfpklerlSSKGFHYLLSLEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCPLLENKFKkgkgqewpkiahipsvliggksihrl
MRALLVHQGLEETLGDPRSEKKPSKLSNEERSKIKAISSRLEELCKRRTVLGLEKIAGGSTHSATVRRRPPTTCLTSEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMDVALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKglplaaralggllrSKQRVDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKSSNNESKFVMHDLVHDLAQWASGDTCFRLDYEFSEDRQSKVFEKVRHCSYIRSRRFAVKDKFKFLDEVENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVGDPSFSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDLQEWEHWEPNRENDEHVQAFSHLRKLSIKRCPKLSGRLPNHLPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSLNEMALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREHLPSSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCPLLENKFKKGKGQEWPKIAHIPSVLIGGKSIHRL
*******************************************LCKRRTVLGLEKIA***********************VYGR**DKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMDVALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSRS**********KFVMHDLVHDLAQWASGDTCFRLDYEFSEDRQSKVFEKVRHCSYIRSRRFAVKDKFKFLDEVENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVGDPSFSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDLQEWEHWEPNR***EHVQAFSHLRKLSIKRCPKLSGRLPNHLPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGP****SLNEMALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREHLPSSLKEIELEYCEIQQCVLD*******************************VQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCPLLENKFKKGKGQEWPKIAHIPSVLIG*******
***************************NEERSKIKAISSRLEELCKRRTVLG***********************TSEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITR*****TDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMDVALKMGSGKNYELKHLSDDDCWSVFLNHAFEGI**GTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKSSNNESKFVMHDLVHDLAQWASGDTCFRLDYEF******KVFEKVRHCSYIRSRRFAVKDKFKFLDEVENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVGDPSFSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDLQEWEHWEPNRENDEHVQAFSHLRKLSIKRCPKLSGRLPNHLPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGP**SKSLNEMALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREHLPSSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLP*GKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCPLLENKFKKGKGQEWPKIAHIPSVLIGGKSIHR*
MRALLVHQGLEET*******************KIKAISSRLEELCKRRTVLGLEKIAG***********PPTTCLTSEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMDVALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKSSNNESKFVMHDLVHDLAQWASGDTCFRLDYEFSEDRQSKVFEKVRHCSYIRSRRFAVKDKFKFLDEVENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVGDPSFSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDLQEWEHWEPNRENDEHVQAFSHLRKLSIKRCPKLSGRLPNHLPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSLNEMALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREHLPSSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCPLLENKFKKGKGQEWPKIAHIPSVLIGGKSIHRL
*RALLVHQGLEETLGDPRSEKKPSKLSNEERSKIKAISSRLEELCKRRTVLGLEKI******************LTSEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMDVALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKSSNNESKFVMHDLVHDLAQWASGDTCFRLDYEFSEDRQSKVFEKVRHCSYIRSRRFAVKDKFKFLDEVENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVGDPSFSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDLQEWEHWEPNRENDEHVQAFSHLRKLSIKRCPKLSGRLPNHLPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSLNEMALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREHLPSSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCPLLENKFKKGKGQEWPKIAHIPSVLIGGKSIHRL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRALLVHQGLEETLGDPRSEKKPSKLSNEERSKIKAISSRLEELCKRRTVLGLEKIAGGSTHSATVRRRPPTTCLTSEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMDVALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKSSNNESKFVMHDLVHDLAQWASGDTCFRLDYEFSEDRQSKVFEKVRHCSYIRSRRFAVKDKFKFLDEVENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVGDPSFSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDLQEWEHWEPNRENDEHVQAFSHLRKLSIKRCPKLSGRLPNHLPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSLNEMALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREHLPSSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCPLLENKFKKGKGQEWPKIAHIPSVLIGGKSIHRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1217 2.2.26 [Sep-21-2011]
Q9LRR41054 Putative disease resistan yes no 0.584 0.674 0.382 1e-150
Q9LRR51424 Putative disease resistan no no 0.552 0.471 0.366 1e-116
Q7XA39988 Putative disease resistan N/A no 0.621 0.765 0.317 2e-96
Q7XBQ9970 Disease resistance protei N/A no 0.637 0.8 0.305 1e-93
Q7XA42979 Putative disease resistan N/A no 0.585 0.727 0.309 3e-93
Q7XA40992 Putative disease resistan N/A no 0.630 0.773 0.310 5e-92
Q39214926 Disease resistance protei no no 0.383 0.504 0.287 1e-44
Q9STE7847 Putative disease resistan no no 0.488 0.701 0.261 3e-40
Q38834852 Disease resistance RPP13- no no 0.413 0.590 0.284 2e-38
P0DI161017 Probable disease resistan no no 0.570 0.682 0.255 4e-38
>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 Back     alignment and function desciption
 Score =  533 bits (1372), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 306/799 (38%), Positives = 466/799 (58%), Gaps = 88/799 (11%)

Query: 32  SKIKAISSRLEELCKRRTVLGLEKIAGGSTHSATVRRRPPTTCLTSEPAVYGRNEDKARI 91
           ++++ ++ RLE L  +R +LGL+++      +   ++R PTT L  E  V+GR++DK  I
Sbjct: 128 TRLEKVTIRLERLASQRNILGLKELT-----AMIPKQRLPTTSLVDESEVFGRDDDKDEI 182

Query: 92  LDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPKAWVCVSDDFDIL 150
           +  ++  +  D     V+ +VG+GG+GKTTL+Q +YND+ +   F  K W  VS++FD+ 
Sbjct: 183 MRFLIPENGKDNG-ITVVAIVGIGGVGKTTLSQLLYNDQHVRSYFGTKVWAHVSEEFDVF 241

Query: 151 RISKAILESITRSSCGLTDLNSVQLKLKEAVFKK------------NKSYELWQALKSPF 198
           +I+K + ES+T   C  TDL+ +Q+KLKE +               N+++  W  L+ PF
Sbjct: 242 KITKKVYESVTSRPCEFTDLDVLQVKLKERLTGTGLPFLLVLDDLWNENFADWDLLRQPF 301

Query: 199 MAGAPGSRIIVTTRSMDVALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFES 258
           +  A GS+I+VTTRS  VA  M +   + L+ LSD DCWS+F+   F   +         
Sbjct: 302 IHAAQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDCWSLFMKTVFGNQEPCLNREIGD 361

Query: 259 TRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSKIWDL-EDEIEIPSVLKLSYHH 317
             +R+V KC+GLPLA + LGG+LR + +V EW  +L+S+IWDL  D+  +  VL++SY++
Sbjct: 362 LAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSSRIWDLPADKSNLLPVLRVSYYY 421

Query: 318 LPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSRS 377
           LP+HLKRCFAYC+I PK + F+++++VLLW+AEGF+QQ++ SK LE+ G+EYF +L SRS
Sbjct: 422 LPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRS 481

Query: 378 MFQKSSNNESKFVMHDLVHDLAQWASGDTCFRLDYEFSEDRQSKVFEKVRHCSYIRSRRF 437
           + QK+   +++++MHD +++LAQ+ASG+       +F +  + +V E+ R+ SY+R   +
Sbjct: 482 LLQKT---KTRYIMHDFINELAQFASGE----FSSKFEDGCKLQVSERTRYLSYLRD-NY 533

Query: 438 AVKDKFKFLDEVENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEV 497
           A   +F+ L EV+ LRTFLP+ + +   S C+  MV   LLP   +LRVLSL    IA +
Sbjct: 534 AEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARL 593

Query: 498 P--------------ISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHH 543
           P              +S   L+ LP+++  ++NL+ L+LSYC  L +LP+ I NL+NL +
Sbjct: 594 PPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRY 653

Query: 544 LDIEGADRLCELPLGMKELKCLRTLTDFI----------------------------NVI 575
           LD+ G  +L ++P     LK L+TLT F                              V+
Sbjct: 654 LDLIGT-KLRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVV 712

Query: 576 DSQEANEAMLRGKKDLEVLKLVWSGG---------PVDELREKNILDMLKPHCNIKRLEI 626
           D  +A EA L  KK L  +  VW  G         P     E  + + L+PH +I++L I
Sbjct: 713 DVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAI 772

Query: 627 ISYGSTRFPSWVGDPSFSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVGMSALKSVGSE 686
             Y   RFP W+ DPSFS +  ++L  C  CTSLPSLGQL  LK+L I GM  L+S+G +
Sbjct: 773 ERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRK 832

Query: 687 IY------GEGCSKPFRSLQTLYFEDLQEWEHWEPNRENDEHVQAFSHLRKLSIKRCPKL 740
            Y       +   +PFRSL+TL F++L +W+ W   R     +  F  L+KL I RCP+L
Sbjct: 833 FYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRGDL--FPSLKKLFILRCPEL 890

Query: 741 SGRLPNHLPSLEEIVIAGC 759
           +G LP  LPSL  + I  C
Sbjct: 891 TGTLPTFLPSLISLHIYKC 909
Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 Back     alignment and function description
>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 Back     alignment and function description
>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 Back     alignment and function description
>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 Back     alignment and function description
>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 Back     alignment and function description
>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1 Back     alignment and function description
>sp|Q9STE7|R13L3_ARATH Putative disease resistance RPP13-like protein 3 OS=Arabidopsis thaliana GN=RPP13L3 PE=3 SV=1 Back     alignment and function description
>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2 Back     alignment and function description
>sp|P0DI16|DRL44_ARATH Probable disease resistance protein RDL5 OS=Arabidopsis thaliana GN=RDL5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1217
284026888 1424 CC-NBS-LRR protein [Quercus suber] 0.965 0.825 0.424 0.0
356554923 1399 PREDICTED: putative disease resistance R 0.967 0.842 0.398 0.0
225449649 1418 PREDICTED: putative disease resistance p 0.948 0.813 0.404 0.0
359487065 1424 PREDICTED: putative disease resistance p 0.953 0.815 0.387 0.0
359487225 1373 PREDICTED: putative disease resistance R 0.936 0.830 0.393 0.0
225450003 1452 PREDICTED: putative disease resistance R 0.957 0.802 0.383 0.0
359487424 1453 PREDICTED: putative disease resistance R 0.954 0.799 0.373 0.0
359487422 1455 PREDICTED: putative disease resistance R 0.954 0.798 0.374 0.0
224059590 1381 cc-nbs-lrr resistance protein [Populus t 0.942 0.830 0.390 0.0
147827051 1335 hypothetical protein VITISV_035099 [Viti 0.921 0.839 0.379 0.0
>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber] Back     alignment and taxonomy information
 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/1307 (42%), Positives = 788/1307 (60%), Gaps = 132/1307 (10%)

Query: 25   KLSNEERSKIKAISSRLEELCKRRTVLGLEKIAGGSTHSATVRRRPPTTCLTSEPAVYGR 84
            K + + + +I+ IS+RL+E+ +++  LGL+   GG   S  + +RP +T +   P + GR
Sbjct: 120  KFNLKMKFEIEKISNRLKEITEQKDRLGLKD--GG--MSVKIWKRPSSTSVPYGPVI-GR 174

Query: 85   NEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVS 144
            +ED+ +I++++LK++ +D +N+ VI +VGM G+GKTTLA+ VYND     F P+AW+CVS
Sbjct: 175  DEDRKKIIELILKDEQTDDSNYHVISIVGMAGVGKTTLARLVYNDDAVKHFNPRAWICVS 234

Query: 145  DDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKK----------NKSYELWQAL 194
            DDFD++ ++KA+LES+T   C L +LN VQ+KL   +  K          N++Y LW+AL
Sbjct: 235  DDFDVMMVTKALLESVTSQPCHLKELNEVQVKLASELEGKKFLLVLDDLWNENYGLWEAL 294

Query: 195  KSPFMAGAPGSRIIVTTRSMDVALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQG 254
              PF AGA GSRIIVTTR+  V   MG+ ++Y L  +S++DCW++F+ H+    + G  G
Sbjct: 295  LPPFRAGAAGSRIIVTTRNASVGKVMGAVQSYNLDFISNNDCWAIFVQHSLMNENFGRPG 354

Query: 255  NFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSKIWDLED-EIEIPSVLKL 313
            N    R+R++ +C+GLPLAAR LGGL R K+ +DEW  I+NSK+W   +   +I  +L+L
Sbjct: 355  NSGLIRERILERCRGLPLAARTLGGLFRGKE-LDEWEDIMNSKLWSSSNMGSDIFPILRL 413

Query: 314  SYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDL 373
            SYHHLP HLKRCFAYC++ P+DYEF+E++L+LLW+AEG I Q++  K +ED G EYF DL
Sbjct: 414  SYHHLPHHLKRCFAYCSLFPRDYEFEEKQLILLWMAEGLIYQAEGDKPMEDLGGEYFRDL 473

Query: 374  LSRSMFQKSSNNESKFVMHDLVHDLAQWASGDTCFRLDYEFSEDRQSKVFEKVRHCSYIR 433
            LSRS FQ+SS+N+S+FVMHDL+ DLAQW +G + FRL+ +   + QSKV  K RH S++ 
Sbjct: 474  LSRSFFQQSSSNKSRFVMHDLITDLAQWVAGISYFRLETKLKGNEQSKVSSKARHLSFVG 533

Query: 434  SRRFAVKDKFKFLDEVENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDN 493
            SR    K KF+ + E ++LRTFLP+       S+ +S  +++ LLPK + LRVLSL    
Sbjct: 534  SRYDGAK-KFEAISEFKHLRTFLPLMAPYVGYSY-LSYHIINQLLPKLQNLRVLSLSGYR 591

Query: 494  IAEVPISIGCLK-------------CLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVN 540
            I  +P +IG LK              LP +I++L+NL+ L+L  C  L  LP   G L N
Sbjct: 592  IVYLPQTIGDLKHLRYLDLSCTQLRSLPTSISTLYNLQTLLLENCTSLKFLPPDFGKLFN 651

Query: 541  LHHLDIEGADRLCELPLGMKELKCLRTLTDFI---------------------------- 572
            L HL+I G++ L  +PL +  L  L+TL++F+                            
Sbjct: 652  LRHLNIFGSNLLEGMPLSIGNLSSLQTLSNFVVGKADSFCVIRELGPLVHLRGTLCISKL 711

Query: 573  -NVIDSQEANEAMLRGKKDLEVLKLVWSGG---PVDELREKNILDMLKPHCNIKRLEIIS 628
             NV  +QEA ++ L GK+DL  + + WS       DE  +  +L+ML+P+  +K L +  
Sbjct: 712  ENVTKAQEARDSYLYGKQDLNEVVMEWSSNLNESQDEETQLEVLNMLQPNVKLKELTVKC 771

Query: 629  YGSTRFPSWVGDPSFSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVGMSALKSVGSEIY 688
            YG T+FP+W+GDPSFSN+ +L+ ENCD C SLP +GQL  LKDL I GM+ +KSVG E Y
Sbjct: 772  YGGTKFPTWIGDPSFSNLVLLRFENCDNCNSLPPVGQLPFLKDLLIKGMAGVKSVGREFY 831

Query: 689  GEGCSKPFRSLQTLYFEDLQEWEHWEPNRENDEHVQAFSHLRKLSIKRCPKLSGRLPNHL 748
            GE CS+PF+SL+TL+FED+  W +W P   N    +AF+ L KLSI RC  L  +LP+HL
Sbjct: 832  GESCSRPFQSLETLHFEDMPRWVNWIPLGVN----EAFACLHKLSIIRCHNLVRKLPDHL 887

Query: 749  PSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSLNEMALCNISKFENW 808
            PSL+++VI GC ++ VS+ +LP LC + I+GCKR+ C+      S   MA   IS+F N 
Sbjct: 888  PSLKKLVIHGCWNMVVSVSNLPMLCVLVIEGCKRVECESSVGFGSPYSMAFSKISEFGNA 947

Query: 809  SM----------------------------ENLVRFGFYSVDTSKDCNALTS-------- 832
            +                             E L R  F    + +DC  L S        
Sbjct: 948  TAGLMHGVSKVEYLKIVDSEKLTTLWEKIPEGLHRLKFLRELSIEDCPTLVSFPASGFPS 1007

Query: 833  ----------------LTDGMIHN--NVRLEVLRIIGCHSLKSIAREHLPSSLKEIELEY 874
                            L +G +H+  N  LE L ++ C S+KSIAR  LP++LK++E+ +
Sbjct: 1008 MLKVIQIKSCSGLKSLLPEGTLHSRENACLERLCVVRCDSMKSIARGQLPTTLKKLEISH 1067

Query: 875  CEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTL 934
            C   QCVLD+GE S +S  + +++INN S +    L+ L ++SCPSLT L SSG+LP TL
Sbjct: 1068 CMNLQCVLDEGEGSSSSSGMHDEDINNRSKT---HLQYLDIKSCPSLTTLTSSGKLPATL 1124

Query: 935  KCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLK 994
              + + +C     L+S  +L  A++ L I S S ++ IAER H +  L  I++  C  LK
Sbjct: 1125 THLLLRECPKLMCLSSTGKLPAALQYLEIQSISKLQKIAERLHQNTSLECIKIWNCHGLK 1184

Query: 995  SLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTG--KLSSL 1052
            SLP+ L+NLS L +  I  C +  S P   LPSN+  + I++C  LKA LP G   L+SL
Sbjct: 1185 SLPEDLHNLSKLRQFLIFWCQSFSSFPAAGLPSNLRVLGIKNCKNLKA-LPNGMRNLTSL 1243

Query: 1053 QLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCIN-RCSDA 1111
            Q L +      +  P+EGL TNL +L +     YKP+ +WG  + +SL K  I+  C D 
Sbjct: 1244 QKLDISHRLDSLPSPQEGLPTNLIELNMHDLKFYKPMFEWGLQQPTSLIKLSIHGECLDV 1303

Query: 1112 VSFP-EVEKGV--ILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPE 1168
             S+P E E GV  +LP SL+++ IS F  LE LS KGF  L SL QLK+ +C   TS P+
Sbjct: 1304 DSYPGERENGVMMLLPNSLSILCISYFQNLECLSPKGFQNLTSLNQLKIYNCLKLTSLPK 1363

Query: 1169 AGFPSSLLFLDIQGCPLLENKFKKGKGQEWPKIAHIPSVLIGGKSIH 1215
             G P SL  L+I+ CPLL       KGQEW KIAHIP VLI  K IH
Sbjct: 1364 EGLPPSLTQLEIRNCPLLSQHCNNEKGQEWSKIAHIPCVLIDNKFIH 1410

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359487065|ref|XP_002270668.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359487225|ref|XP_002268551.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225450003|ref|XP_002272221.1| PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359487424|ref|XP_002271822.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359487422|ref|XP_002271916.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224059590|ref|XP_002299922.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222847180|gb|EEE84727.1| cc-nbs-lrr resistance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147827051|emb|CAN75510.1| hypothetical protein VITISV_035099 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1217
TAIR|locus:2091662 1424 AT3G14460 [Arabidopsis thalian 0.433 0.370 0.343 3.4e-131
TAIR|locus:20916721054 AT3G14470 [Arabidopsis thalian 0.455 0.525 0.372 8.1e-108
UNIPROTKB|O48647 1802 O48647 "XA1" [Oryza sativa (ta 0.198 0.134 0.316 8.6e-65
TAIR|locus:2077572926 RPM1 "RESISTANCE TO P. SYRINGA 0.380 0.5 0.248 2.1e-33
TAIR|locus:2201996889 RPS5 "AT1G12220" [Arabidopsis 0.509 0.697 0.262 1.4e-32
TAIR|locus:2166320888 AT5G63020 [Arabidopsis thalian 0.511 0.701 0.253 3.1e-31
TAIR|locus:2203881893 AT1G62630 [Arabidopsis thalian 0.536 0.731 0.254 6.7e-31
TAIR|locus:2131689919 AT4G27220 [Arabidopsis thalian 0.544 0.721 0.239 8.2e-31
TAIR|locus:504956483847 AT3G46730 [Arabidopsis thalian 0.488 0.701 0.264 1.8e-30
TAIR|locus:2201986885 RFL1 "AT1G12210" [Arabidopsis 0.511 0.702 0.254 1e-29
TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 759 (272.2 bits), Expect = 3.4e-131, Sum P(3) = 3.4e-131
 Identities = 195/567 (34%), Positives = 303/567 (53%)

Query:    33 KIKAISSRLEELCKRRTVLGLEKIAGGSTHS--ATVRRRPPTTCLTSEPAVYGRNEDKAR 90
             K++ +   LE   K   V+GL++ +           R RP       +  + GR EDK  
Sbjct:   121 KMEKVVRLLEHHVKHIEVIGLKEYSETREPQWRQASRSRPDDL---PQGRLVGRVEDKLA 177

Query:    91 ILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND-KLTDDFKPKAWVCVSDDFDI 149
             +++++L +D        VI +VGM G+GKTTL + V+ND ++T+ F+ K W+    +F++
Sbjct:   178 LVNLLLSDDEISIGKPAVISVVGMPGVGKTTLTEIVFNDYRVTEHFEVKMWISAGINFNV 237

Query:   150 LRISKAILESITRSSCGLTDLNSVQLKLKEAVFKK----------NKSYELWQALKSPFM 199
               ++KA+L+ IT S+    DL S+Q++LK+ +  K          ++S   W++ +  F 
Sbjct:   238 FTVTKAVLQDITSSAVNTEDLPSLQIQLKKTLSGKRFLLVLDDFWSESDSEWESFQVAFT 297

Query:   200 AGAPGSRIIVTTRSMDVALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGT-QGNFES 258
                 GS+I++TTRS  V+    + K Y++K +++++CW +    AF  I  G+     E 
Sbjct:   298 DAEEGSKIVLTTRSEIVSTVAKAEKIYQMKLMTNEECWELISRFAFGNISVGSINQELEG 357

Query:   259 TRQRVVAKCKXXXXXXXXXXXXXXSKQRVDEWRAILNSKIWDLEDEIEIPSVLKLSYHHL 318
               +R+  +CK              SK   D+W A+  SK +       +P VLKLSY  L
Sbjct:   358 IGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAV--SKNFSSYTNSILP-VLKLSYDSL 414

Query:   319 PSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSRSM 378
             P  LKRCFA C+I PK + F  EELVLLW+A   + Q + S++LED G++Y  DL+++S 
Sbjct:   415 PPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIGNDYLGDLVAQSF 474

Query:   379 FQKSSNNESKFVMHDLVHDLAQWASGDTCFRLDYEFSEDRQSKVFEKVRHCSYIRSRRFA 438
             FQ+     + FVMHDL++DLA+  SGD CFRL+    +D   ++    RH S+ RS+  A
Sbjct:   475 FQRLDITMTSFVMHDLMNDLAKAVSGDFCFRLE----DDNIPEIPSTTRHFSFSRSQCDA 530

Query:   439 VKDKFKFLDEVENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVP 498
                 F+ +   E LRT LP        S  ++  VL+ LL     LR+LSL    I  +P
Sbjct:   531 -SVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLP 589

Query:   499 ISIGCLKCL-------------PEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLD 545
              S+  LK L             PE + +L NL+ L+LS C  L  LP SI  L+NL  LD
Sbjct:   590 KSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLD 649

Query:   546 IEGADRLCELPLGMKELKCLRTLTDFI 572
             + G   L E+P G+K+L+ L+ L++F+
Sbjct:   650 LVGTP-LVEMPPGIKKLRSLQKLSNFV 675
GO:0005634 "nucleus" evidence=ISM
GO:0006952 "defense response" evidence=IEA;ISS
GO:0043531 "ADP binding" evidence=IEA
TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)] Back     alignment and assigned GO terms
TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2203881 AT1G62630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1217
pfam00931285 pfam00931, NB-ARC, NB-ARC domain 8e-65
PLN03210 1153 PLN03210, PLN03210, Resistant to P 4e-11
PLN03210 1153 PLN03210, PLN03210, Resistant to P 5e-06
PLN032101153 PLN03210, PLN03210, Resistant to P 6e-05
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain Back     alignment and domain information 
 Score =  221 bits (564), Expect = 8e-65
 Identities = 109/288 (37%), Positives = 157/288 (54%), Gaps = 20/288 (6%)

Query: 84  RNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDD-FKPKAWVC 142
           R +    +++ +L+       N  V+ +VGMGG+GKTTLA+++YND      F   AWV 
Sbjct: 1   REDMIEALIEKLLEMSD----NLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVV 56

Query: 143 VSDDFDILRISKAILESI--TRSSCGLTDLNSVQLKLKEAVFKKNK--------SYELWQ 192
           VS  +   R+ K IL+ +    S     + + + +K+KEA+ +K              W 
Sbjct: 57  VSKTYTEFRLQKDILQELGLDDSDWVEKNESELAVKIKEALLRKRFLLVLDDVWEKNDWD 116

Query: 193 ALKSPFMAGAPGSRIIVTTRSMDVALKMGSG-KNYELKHLSDDDCWSVFLNHAFEGIDTG 251
            +  PF  G  GSR+IVTTRS  VA +MG   K +E++ L  ++ W +F N  FE  +  
Sbjct: 117 KIGVPFPDGENGSRVIVTTRSESVAGRMGGTSKPHEVESLEPEESWELFSNKVFEK-ELP 175

Query: 252 TQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSKIWDLEDEI---EIP 308
                E   + +V KCKGLPLA + LGGLL  K  V EW  +L     +L       E+ 
Sbjct: 176 PCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNELAGRDGLNEVL 235

Query: 309 SVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQS 356
           S+L LSY +LP HLKRCF Y A+ P+DY  ++E+L+ LWIAEGF+  S
Sbjct: 236 SILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVIPS 283

Length = 285
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1217
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 100.0
PLN032101153 Resistant to P. syringae 6; Provisional 100.0
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 100.0
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 100.0
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 100.0
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.88
KOG0472565 consensus Leucine-rich repeat protein [Function un 99.88
KOG0472565 consensus Leucine-rich repeat protein [Function un 99.87
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 99.87
PLN03210 1153 Resistant to P. syringae 6; Provisional 99.87
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 99.84
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 99.84
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.79
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 99.79
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 99.51
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 99.47
KOG4237498 consensus Extracellular matrix protein slit, conta 99.39
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 99.35
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 99.27
KOG0617264 consensus Ras suppressor protein (contains leucine 99.24
KOG4237498 consensus Extracellular matrix protein slit, conta 99.16
PRK04841903 transcriptional regulator MalT; Provisional 99.16
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 99.03
KOG0617264 consensus Ras suppressor protein (contains leucine 99.02
PRK00411394 cdc6 cell division control protein 6; Reviewed 98.94
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 98.85
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 98.82
TIGR02928365 orc1/cdc6 family replication initiation protein. M 98.82
COG2909894 MalT ATP-dependent transcriptional regulator [Tran 98.8
KOG4341483 consensus F-box protein containing LRR [General fu 98.78
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 98.74
PRK15386 426 type III secretion protein GogB; Provisional 98.69
KOG4341483 consensus F-box protein containing LRR [General fu 98.69
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 98.68
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 98.64
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 98.58
PRK15386426 type III secretion protein GogB; Provisional 98.47
KOG3207 505 consensus Beta-tubulin folding cofactor E [Posttra 98.41
KOG1259490 consensus Nischarin, modulator of integrin alpha5 98.39
COG3903414 Predicted ATPase [General function prediction only 98.35
PTZ001121164 origin recognition complex 1 protein; Provisional 98.35
PF05729166 NACHT: NACHT domain 98.34
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 98.32
KOG3207 505 consensus Beta-tubulin folding cofactor E [Posttra 98.32
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 98.29
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 98.29
PTZ00202550 tuzin; Provisional 98.2
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 98.16
COG3899849 Predicted ATPase [General function prediction only 98.14
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 98.14
PRK06893229 DNA replication initiation factor; Validated 98.13
KOG0532722 consensus Leucine-rich repeat (LRR) protein, conta 98.12
COG2255332 RuvB Holliday junction resolvasome, helicase subun 98.04
KOG1259490 consensus Nischarin, modulator of integrin alpha5 97.97
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 97.97
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 97.93
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 97.84
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 97.83
PRK05564313 DNA polymerase III subunit delta'; Validated 97.78
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 97.78
COG2256436 MGS1 ATPase related to the helicase subunit of the 97.78
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 97.77
PRK13342413 recombination factor protein RarA; Reviewed 97.76
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 97.74
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 97.74
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 97.74
KOG0532 722 consensus Leucine-rich repeat (LRR) protein, conta 97.73
PF13191185 AAA_16: AAA ATPase domain; PDB: 2V1U_A. 97.73
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 97.7
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 97.68
PRK08084235 DNA replication initiation factor; Provisional 97.68
TIGR02903615 spore_lon_C ATP-dependent protease, Lon family. Me 97.67
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 97.64
PRK14949944 DNA polymerase III subunits gamma and tau; Provisi 97.63
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 97.61
PRK08727233 hypothetical protein; Validated 97.6
PLN03150623 hypothetical protein; Provisional 97.58
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 97.58
KOG0531414 consensus Protein phosphatase 1, regulatory subuni 97.56
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 97.56
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 97.54
KOG2028554 consensus ATPase related to the helicase subunit o 97.54
PLN03150623 hypothetical protein; Provisional 97.54
PRK00440319 rfc replication factor C small subunit; Reviewed 97.53
PRK12402337 replication factor C small subunit 2; Reviewed 97.52
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 97.47
cd01128249 rho_factor Transcription termination factor rho is 97.47
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 97.45
PRK09376416 rho transcription termination factor Rho; Provisio 97.45
PRK04195482 replication factor C large subunit; Provisional 97.44
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 97.44
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 97.43
PRK05642234 DNA replication initiation factor; Validated 97.43
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 97.41
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 97.4
PLN03025319 replication factor C subunit; Provisional 97.4
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 97.38
PRK07940394 DNA polymerase III subunit delta'; Validated 97.38
KOG3665699 consensus ZYG-1-like serine/threonine protein kina 97.38
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 97.37
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 97.36
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 97.36
PRK09087226 hypothetical protein; Validated 97.35
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 97.34
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 97.33
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 97.33
PF13173128 AAA_14: AAA domain 97.33
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 97.32
KOG0531414 consensus Protein phosphatase 1, regulatory subuni 97.31
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 97.28
PRK08903227 DnaA regulatory inactivator Hda; Validated 97.27
PRK07471365 DNA polymerase III subunit delta'; Validated 97.25
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 97.24
PF14516331 AAA_35: AAA-like domain 97.19
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 97.19
PRK11331459 5-methylcytosine-specific restriction enzyme subun 97.15
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 97.15
PRK13341725 recombination factor protein RarA/unknown domain f 97.13
PRK08118167 topology modulation protein; Reviewed 97.06
PRK09112351 DNA polymerase III subunit delta'; Validated 97.05
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 97.05
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 97.04
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 96.99
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 96.98
KOG2982418 consensus Uncharacterized conserved protein [Funct 96.96
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 96.94
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 96.92
COG0593408 DnaA ATPase involved in DNA replication initiation 96.91
PRK03992389 proteasome-activating nucleotidase; Provisional 96.9
PRK14087450 dnaA chromosomal replication initiation protein; P 96.88
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 96.88
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 96.87
KOG1947482 consensus Leucine rich repeat proteins, some prote 96.86
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 96.84
TIGR00362405 DnaA chromosomal replication initiator protein Dna 96.84
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 96.84
KOG1947482 consensus Leucine rich repeat proteins, some prote 96.83
PHA02544316 44 clamp loader, small subunit; Provisional 96.8
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 96.77
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 96.76
KOG2982418 consensus Uncharacterized conserved protein [Funct 96.74
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 96.73
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 96.73
PRK06620214 hypothetical protein; Validated 96.72
TIGR00767415 rho transcription termination factor Rho. Members 96.71
KOG2543438 consensus Origin recognition complex, subunit 5 [R 96.71
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 96.68
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 96.65
CHL00095821 clpC Clp protease ATP binding subunit 96.65
smart00763361 AAA_PrkA PrkA AAA domain. This is a family of PrkA 96.63
CHL00181287 cbbX CbbX; Provisional 96.63
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 96.59
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 96.58
PRK07399314 DNA polymerase III subunit delta'; Validated 96.56
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 96.56
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 96.56
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 96.55
KOG2227529 consensus Pre-initiation complex, subunit CDC6, AA 96.5
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 96.44
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 96.44
PRK07261171 topology modulation protein; Provisional 96.42
PRK14088440 dnaA chromosomal replication initiation protein; P 96.41
PRK12422445 chromosomal replication initiation protein; Provis 96.38
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 96.37
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 96.36
PF13207121 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 96.31
PRK00149450 dnaA chromosomal replication initiation protein; R 96.3
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 96.3
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 96.26
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 96.25
PRK06696223 uridine kinase; Validated 96.23
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 96.2
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 96.18
PRK10865857 protein disaggregation chaperone; Provisional 96.1
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 96.05
KOG0744423 consensus AAA+-type ATPase [Posttranslational modi 96.03
PRK05707328 DNA polymerase III subunit delta'; Validated 96.02
PRK14086617 dnaA chromosomal replication initiation protein; P 96.01
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 95.92
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 95.86
COG1618179 Predicted nucleotide kinase [Nucleotide transport 95.81
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 95.78
KOG2004906 consensus Mitochondrial ATP-dependent protease PIM 95.73
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 95.69
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 95.68
PRK08058329 DNA polymerase III subunit delta'; Validated 95.59
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 95.56
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 95.45
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 95.43
PRK15455644 PrkA family serine protein kinase; Provisional 95.42
PRK07667193 uridine kinase; Provisional 95.41
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 95.35
CHL00176638 ftsH cell division protein; Validated 95.35
COG0466782 Lon ATP-dependent Lon protease, bacterial type [Po 95.3
PRK06090319 DNA polymerase III subunit delta'; Validated 95.3
COG2884223 FtsE Predicted ATPase involved in cell division [C 95.22
PRK08769319 DNA polymerase III subunit delta'; Validated 95.19
PF0056022 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le 95.08
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 95.05
PF00485194 PRK: Phosphoribulokinase / Uridine kinase family; 95.04
PF0056022 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le 95.02
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 95.01
PF13238129 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB 94.97
PRK13531498 regulatory ATPase RavA; Provisional 94.94
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 94.94
COG1102179 Cmk Cytidylate kinase [Nucleotide transport and me 94.87
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 94.75
PTZ00301210 uridine kinase; Provisional 94.74
COG0572218 Udk Uridine kinase [Nucleotide transport and metab 94.74
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 94.72
cd0201969 NK Nucleoside/nucleotide kinase (NK) is a protein 94.71
PRK05541176 adenylylsulfate kinase; Provisional 94.7
KOG0730693 consensus AAA+-type ATPase [Posttranslational modi 94.59
KOG0728404 consensus 26S proteasome regulatory complex, ATPas 94.58
PF07726131 AAA_3: ATPase family associated with various cellu 94.55
PRK08233182 hypothetical protein; Provisional 94.55
TIGR02237209 recomb_radB DNA repair and recombination protein R 94.55
KOG2123 388 consensus Uncharacterized conserved protein [Funct 94.51
PRK06871325 DNA polymerase III subunit delta'; Validated 94.48
PRK05439311 pantothenate kinase; Provisional 94.48
PRK10536262 hypothetical protein; Provisional 94.45
PRK06762166 hypothetical protein; Provisional 94.43
PRK05480209 uridine/cytidine kinase; Provisional 94.42
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 94.37
TIGR00150133 HI0065_YjeE ATPase, YjeE family. Members of this f 94.36
PRK06547172 hypothetical protein; Provisional 94.35
PF13671143 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 94.3
smart00382148 AAA ATPases associated with a variety of cellular 94.29
KOG2035351 consensus Replication factor C, subunit RFC3 [Cell 94.27
PRK09270229 nucleoside triphosphate hydrolase domain-containin 94.26
CHL00195489 ycf46 Ycf46; Provisional 94.24
PF01583156 APS_kinase: Adenylylsulphate kinase; InterPro: IPR 94.24
KOG0731774 consensus AAA+-type ATPase containing the peptidas 94.22
PRK09361225 radB DNA repair and recombination protein RadB; Pr 94.22
PF10443431 RNA12: RNA12 protein; InterPro: IPR018850 Mitochon 94.22
PHA00729226 NTP-binding motif containing protein 94.2
cd01394218 radB RadB. The archaeal protein radB shares simila 94.19
TIGR00235207 udk uridine kinase. Model contains a number of lon 94.15
PRK13765637 ATP-dependent protease Lon; Provisional 94.14
COG0003322 ArsA Predicted ATPase involved in chromosome parti 94.12
TIGR00554290 panK_bact pantothenate kinase, bacterial type. Sho 94.11
PF00004132 AAA: ATPase family associated with various cellula 94.09
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 94.09
PF03205140 MobB: Molybdopterin guanine dinucleotide synthesis 94.07
cd02025220 PanK Pantothenate kinase (PanK) catalyzes the phos 94.06
KOG4252246 consensus GTP-binding protein [Signal transduction 94.02
COG1373398 Predicted ATPase (AAA+ superfamily) [General funct 94.0
PRK04040188 adenylate kinase; Provisional 94.0
PRK03839180 putative kinase; Provisional 93.95
COG3640255 CooC CO dehydrogenase maturation factor [Cell divi 93.91
COG1428216 Deoxynucleoside kinases [Nucleotide transport and 93.86
PRK14974336 cell division protein FtsY; Provisional 93.85
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 93.84
TIGR00390441 hslU ATP-dependent protease HslVU, ATPase subunit. 93.83
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 93.81
COG2019189 AdkA Archaeal adenylate kinase [Nucleotide transpo 93.8
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 93.79
PF14532138 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 93.75
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 93.72
PRK00625173 shikimate kinase; Provisional 93.72
PF00910107 RNA_helicase: RNA helicase; InterPro: IPR000605 He 93.7
cd01393226 recA_like RecA is a bacterial enzyme which has rol 93.69
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 93.62
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 93.6
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 93.58
PRK12608380 transcription termination factor Rho; Provisional 93.55
KOG0727408 consensus 26S proteasome regulatory complex, ATPas 93.49
PRK00771437 signal recognition particle protein Srp54; Provisi 93.48
COG0237201 CoaE Dephospho-CoA kinase [Coenzyme metabolism] 93.44
TIGR01360188 aden_kin_iso1 adenylate kinase, isozyme 1 subfamil 93.42
COG1936180 Predicted nucleotide kinase (related to CMP and AM 93.39
PRK07993334 DNA polymerase III subunit delta'; Validated 93.36
cd02024187 NRK1 Nicotinamide riboside kinase (NRK) is an enzy 93.3
PRK10865857 protein disaggregation chaperone; Provisional 93.3
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 93.21
PF08298358 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi 93.19
PF03308266 ArgK: ArgK protein; InterPro: IPR005129 Bacterial 93.17
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 93.15
KOG2228408 consensus Origin recognition complex, subunit 4 [R 93.07
PF1324576 AAA_19: Part of AAA domain 93.05
PRK05800170 cobU adenosylcobinamide kinase/adenosylcobinamide- 93.04
PRK00131175 aroK shikimate kinase; Reviewed 93.01
COG0542786 clpA ATP-binding subunits of Clp protease and DnaK 92.98
KOG1969877 consensus DNA replication checkpoint protein CHL12 92.94
TIGR01359183 UMP_CMP_kin_fam UMP-CMP kinase family. This subfam 92.94
cd02028179 UMPK_like Uridine monophosphate kinase_like (UMPK_ 92.94
TIGR00764608 lon_rel lon-related putative ATP-dependent proteas 92.9
COG1136226 SalX ABC-type antimicrobial peptide transport syst 92.89
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 92.85
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 92.84
PF13306129 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ 92.82
PRK12339197 2-phosphoglycerate kinase; Provisional 92.82
TIGR02322179 phosphon_PhnN phosphonate metabolism protein/1,5-b 92.81
COG0467260 RAD55 RecA-superfamily ATPases implicated in signa 92.77
TIGR00064272 ftsY signal recognition particle-docking protein F 92.77
COG0714329 MoxR-like ATPases [General function prediction onl 92.74
PRK06217183 hypothetical protein; Validated 92.71
COG0194191 Gmk Guanylate kinase [Nucleotide transport and met 92.7
PF13306129 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ 92.7
PRK15453290 phosphoribulokinase; Provisional 92.69
cd00227175 CPT Chloramphenicol (Cm) phosphotransferase (CPT). 92.68
PF1350417 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO 92.67
PRK00889175 adenylylsulfate kinase; Provisional 92.65
cd03214180 ABC_Iron-Siderophores_B12_Hemin ABC transporters, 92.65
COG1703323 ArgK Putative periplasmic protein kinase ArgK and 92.63
COG1224450 TIP49 DNA helicase TIP49, TBP-interacting protein 92.62
cd02023198 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. 92.62
cd02021150 GntK Gluconate kinase (GntK) catalyzes the phospho 92.62
TIGR02012321 tigrfam_recA protein RecA. This model describes or 92.62
cd03223166 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass 92.6
COG0563178 Adk Adenylate kinase and related kinases [Nucleoti 92.59
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 92.58
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 92.46
PRK10751173 molybdopterin-guanine dinucleotide biosynthesis pr 92.44
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 92.43
KOG1532366 consensus GTPase XAB1, interacts with DNA repair p 92.37
PF00625183 Guanylate_kin: Guanylate kinase; InterPro: IPR0081 92.33
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309127 Torsin: Torsin; InterPro: IPR010448 This family co 92.33
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 92.31
PRK13949169 shikimate kinase; Provisional 92.3
PRK04301317 radA DNA repair and recombination protein RadA; Va 92.3
PF03193161 DUF258: Protein of unknown function, DUF258; Inter 92.25
cd00071137 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. 92.24
PF03266168 NTPase_1: NTPase; InterPro: IPR004948 This entry r 92.24
PRK14737186 gmk guanylate kinase; Provisional 92.2
cd02020147 CMPK Cytidine monophosphate kinase (CMPK) catalyze 92.18
PRK06964342 DNA polymerase III subunit delta'; Validated 92.14
PRK13947171 shikimate kinase; Provisional 92.1
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 92.05
KOG3347176 consensus Predicted nucleotide kinase/nuclear prot 92.04
TIGR00176155 mobB molybdopterin-guanine dinucleotide biosynthes 92.03
PRK04296190 thymidine kinase; Provisional 92.03
TIGR03263180 guanyl_kin guanylate kinase. Members of this famil 92.02
TIGR00602637 rad24 checkpoint protein rad24. This family is bas 91.99
COG1124252 DppF ABC-type dipeptide/oligopeptide/nickel transp 91.98
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 91.97
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 91.95
COG4240300 Predicted kinase [General function prediction only 91.94
PF04665241 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 91.92
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 91.92
cd03247178 ABCC_cytochrome_bd The CYD subfamily implicated in 91.88
PF02374305 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_ 91.86
PRK09354349 recA recombinase A; Provisional 91.84
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 91.84
PRK03846198 adenylylsulfate kinase; Provisional 91.8
TIGR00763775 lon ATP-dependent protease La. This protein is ind 91.78
PRK12377248 putative replication protein; Provisional 91.78
cd01133274 F1-ATPase_beta F1 ATP synthase beta subunit, nucle 91.75
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 91.74
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 91.72
COG0542786 clpA ATP-binding subunits of Clp protease and DnaK 91.71
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 91.7
PRK14530215 adenylate kinase; Provisional 91.7
cd00983325 recA RecA is a bacterial enzyme which has roles in 91.67
TIGR02236310 recomb_radA DNA repair and recombination protein R 91.63
PF08423256 Rad51: Rad51; InterPro: IPR013632 This domain is f 91.63
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 91.63
cd03115173 SRP The signal recognition particle (SRP) mediates 91.61
PRK10463290 hydrogenase nickel incorporation protein HypB; Pro 91.6
PRK06761282 hypothetical protein; Provisional 91.55
PRK05057172 aroK shikimate kinase I; Reviewed 91.53
PLN02200234 adenylate kinase family protein 91.51
PLN02348395 phosphoribulokinase 91.48
cd02027149 APSK Adenosine 5'-phosphosulfate kinase (APSK) cat 91.47
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 91.46
PRK13948182 shikimate kinase; Provisional 91.46
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 91.4
PRK14738206 gmk guanylate kinase; Provisional 91.39
TIGR01287275 nifH nitrogenase iron protein. This model describe 91.38
KOG0079198 consensus GTP-binding protein H-ray, small G prote 91.38
PF08477119 Miro: Miro-like protein; InterPro: IPR013684 Mitoc 91.36
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 91.35
PF06068398 TIP49: TIP49 C-terminus; InterPro: IPR010339 This 91.34
cd00464154 SK Shikimate kinase (SK) is the fifth enzyme in th 91.33
PHA02244383 ATPase-like protein 91.31
cd00820107 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC 91.26
PLN02318656 phosphoribulokinase/uridine kinase 91.25
KOG2123388 consensus Uncharacterized conserved protein [Funct 91.21
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 91.2
PRK13975196 thymidylate kinase; Provisional 91.2
PRK08699325 DNA polymerase III subunit delta'; Validated 91.16
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 91.16
PRK00300205 gmk guanylate kinase; Provisional 91.15
PRK06526254 transposase; Provisional 91.14
PRK10787784 DNA-binding ATP-dependent protease La; Provisional 91.1
PRK13946184 shikimate kinase; Provisional 91.05
COG0468279 RecA RecA/RadA recombinase [DNA replication, recom 91.02
PRK07952244 DNA replication protein DnaC; Validated 91.01
TIGR01313163 therm_gnt_kin carbohydrate kinase, thermoresistant 91.0
PRK05973237 replicative DNA helicase; Provisional 90.98
PF13521163 AAA_28: AAA domain; PDB: 1LW7_A. 90.96
cd01124187 KaiC KaiC is a circadian clock protein primarily f 90.96
PRK13768253 GTPase; Provisional 90.94
PRK10078186 ribose 1,5-bisphosphokinase; Provisional 90.93
cd02117212 NifH_like This family contains the NifH (iron prot 90.89
PRK14527191 adenylate kinase; Provisional 90.79
KOG3308225 consensus Uncharacterized protein of the uridine k 90.78
PF1350417 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO 90.77
PRK05537568 bifunctional sulfate adenylyltransferase subunit 1 90.75
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 90.73
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 90.68
COG1100219 GTPase SAR1 and related small G proteins [General 90.66
COG0529197 CysC Adenylylsulfate kinase and related kinases [I 90.6
TIGR00959428 ffh signal recognition particle protein. This mode 90.53
PRK13695174 putative NTPase; Provisional 90.51
PRK09435332 membrane ATPase/protein kinase; Provisional 90.51
COG3638258 ABC-type phosphate/phosphonate transport system, A 90.43
PF06564243 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p 90.41
KOG3864221 consensus Uncharacterized conserved protein [Funct 90.38
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 90.38
TIGR00073207 hypB hydrogenase accessory protein HypB. HypB is i 90.37
COG0378202 HypB Ni2+-binding GTPase involved in regulation of 90.23
PRK12338319 hypothetical protein; Provisional 90.21
PRK04182180 cytidylate kinase; Provisional 90.2
PRK08116268 hypothetical protein; Validated 90.2
COG0703172 AroK Shikimate kinase [Amino acid transport and me 90.18
PF10662143 PduV-EutP: Ethanolamine utilisation - propanediol 90.16
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 90.13
KOG1514767 consensus Origin recognition complex, subunit 1, a 90.12
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 90.1
cd02029277 PRK_like Phosphoribulokinase-like (PRK-like) is a 90.1
cd0198399 Fer4_NifH The Fer4_NifH superfamily contains a var 90.09
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 90.08
TIGR03574249 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem 90.06
PLN03046460 D-glycerate 3-kinase; Provisional 90.04
PLN03187344 meiotic recombination protein DMC1 homolog; Provis 90.0
PRK13230279 nitrogenase reductase-like protein; Reviewed 90.0
TIGR02238313 recomb_DMC1 meiotic recombinase Dmc1. This model d 89.99
COG4088261 Predicted nucleotide kinase [Nucleotide transport 89.99
cd02040270 NifH NifH gene encodes component II (iron protein) 89.97
PRK08181269 transposase; Validated 89.96
PF03029238 ATP_bind_1: Conserved hypothetical ATP binding pro 89.96
PF00142273 Fer4_NifH: 4Fe-4S iron sulfur cluster binding prot 89.95
CHL00095821 clpC Clp protease ATP binding subunit 89.92
cd01672200 TMPK Thymidine monophosphate kinase (TMPK), also k 89.9
PLN02796347 D-glycerate 3-kinase 89.89
COG4608268 AppF ABC-type oligopeptide transport system, ATPas 89.88
TIGR02173171 cyt_kin_arch cytidylate kinase, putative. Proteins 89.87
PRK13232273 nifH nitrogenase reductase; Reviewed 89.86
PTZ00088229 adenylate kinase 1; Provisional 89.84
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 89.83
smart00072184 GuKc Guanylate kinase homologues. Active enzymes c 89.82
TIGR02239316 recomb_RAD51 DNA repair protein RAD51. This eukary 89.81
PF03215519 Rad17: Rad17 cell cycle checkpoint protein 89.8
KOG0473326 consensus Leucine-rich repeat protein [Function un 89.77
cd04139164 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) 89.72
PRK04328249 hypothetical protein; Provisional 89.67
KOG0729435 consensus 26S proteasome regulatory complex, ATPas 89.65
PRK13236296 nitrogenase reductase; Reviewed 89.63
PRK03731171 aroL shikimate kinase II; Reviewed 89.62
COG0541451 Ffh Signal recognition particle GTPase [Intracellu 89.62
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 89.62
PRK14532188 adenylate kinase; Provisional 89.6
PRK08356195 hypothetical protein; Provisional 89.59
PRK09825176 idnK D-gluconate kinase; Provisional 89.58
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 89.57
cd01428194 ADK Adenylate kinase (ADK) catalyzes the reversibl 89.56
TIGR00750300 lao LAO/AO transport system ATPase. Mutations have 89.54
PRK14531183 adenylate kinase; Provisional 89.53
PRK13231264 nitrogenase reductase-like protein; Reviewed 89.52
PRK09183259 transposase/IS protein; Provisional 89.48
PRK10416318 signal recognition particle-docking protein FtsY; 89.46
cd03116159 MobB Molybdenum is an essential trace element in t 89.44
PRK10867433 signal recognition particle protein; Provisional 89.4
PRK14493274 putative bifunctional molybdopterin-guanine dinucl 89.38
TIGR02902531 spore_lonB ATP-dependent protease LonB. Members of 89.36
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 89.36
COG0470325 HolB ATPase involved in DNA replication [DNA repli 89.33
KOG0736953 consensus Peroxisome assembly factor 2 containing 89.31
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 89.26
PRK13407334 bchI magnesium chelatase subunit I; Provisional 89.26
PRK06835329 DNA replication protein DnaC; Validated 89.26
PRK08099399 bifunctional DNA-binding transcriptional repressor 89.25
cd04120202 Rab12 Rab12 subfamily. Rab12 was first identified 89.24
PLN02165334 adenylate isopentenyltransferase 89.22
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 89.22
smart00173164 RAS Ras subfamily of RAS small GTPases. Similar in 89.19
cd02022179 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2 89.19
PLN02924220 thymidylate kinase 89.17
PTZ00494664 tuzin-like protein; Provisional 89.15
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 89.13
KOG0737386 consensus AAA+-type ATPase [Posttranslational modi 89.13
PRK06851367 hypothetical protein; Provisional 89.1
KOG0734752 consensus AAA+-type ATPase containing the peptidas 89.09
PRK13235274 nifH nitrogenase reductase; Reviewed 89.07
PF01926116 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I 89.06
PRK06067234 flagellar accessory protein FlaH; Validated 89.04
cd04119168 RJL RJL (RabJ-Like) subfamily. RJLs are found in m 89.02
PRK14528186 adenylate kinase; Provisional 89.0
PLN03186342 DNA repair protein RAD51 homolog; Provisional 88.95
TIGR00041195 DTMP_kinase thymidylate kinase. Function: phosphor 88.95
TIGR02016296 BchX chlorophyllide reductase iron protein subunit 88.93
COG1763161 MobB Molybdopterin-guanine dinucleotide biosynthes 88.93
PRK08154309 anaerobic benzoate catabolism transcriptional regu 88.9
cd01858157 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei 88.89
COG0465596 HflB ATP-dependent Zn proteases [Posttranslational 88.87
cd04138162 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, 88.87
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 88.86
COG1126240 GlnQ ABC-type polar amino acid transport system, A 88.84
PRK06921266 hypothetical protein; Provisional 88.83
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-71  Score=668.41  Aligned_cols=543  Identities=30%  Similarity=0.464  Sum_probs=441.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCcccCCCCCCCCCcCCCCCccccchhhHHHHHHHHhcCCCCCCC
Q 039990           25 KLSNEERSKIKAISSRLEELCKRRTVLGLEKIAGGSTHSATVRRRPPTTCLTSEPAVYGRNEDKARILDMVLKNDPSDAA  104 (1217)
Q Consensus        25 ~~~~~~~~~i~~l~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~  104 (1217)
                      .++++.+..+..+.+++.++.+....++..................+..+..+..+ ||.++.++++.+.|..++.    
T Consensus       105 ~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~----  179 (889)
T KOG4658|consen  105 GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV----  179 (889)
T ss_pred             hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC----
Confidence            57788888899999999999888888875442211111010011222333444444 9999999999999998642    


Q ss_pred             CcEEEEEEccCCchHHHHHHHHHhcc--ccCCCCCeEEEEeCCcccHHHHHHHHHHHhhcCCCCCC--ChhHHHHHHHHH
Q 039990          105 NFRVIPLVGMGGIGKTTLAQEVYNDK--LTDDFKPKAWVCVSDDFDILRISKAILESITRSSCGLT--DLNSVQLKLKEA  180 (1217)
Q Consensus       105 ~~~vv~I~G~gGiGKTtLA~~v~~~~--~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~  180 (1217)
                        .+|+|+||||+||||||++++++.  ++++||.++||.||++++...++++|++.++.......  ..++++..+.+.
T Consensus       180 --~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~  257 (889)
T KOG4658|consen  180 --GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNL  257 (889)
T ss_pred             --CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHH
Confidence              799999999999999999999986  78999999999999999999999999999987554332  346788888888


Q ss_pred             HHhc--------CcCHHHHHHhhcccCCCCCCcEEEEEcCchHHHHh-hCCCceEeccCCChHHHHHHHHHHHhCCCCCC
Q 039990          181 VFKK--------NKSYELWQALKSPFMAGAPGSRIIVTTRSMDVALK-MGSGKNYELKHLSDDDCWSVFLNHAFEGIDTG  251 (1217)
Q Consensus       181 l~~~--------~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~  251 (1217)
                      +..+        +|+..+|+.+..++|....||||++|||+..|+.. +++...++++.|+.+|||+||++.+|.... .
T Consensus       258 L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~  336 (889)
T KOG4658|consen  258 LEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-G  336 (889)
T ss_pred             hccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-c
Confidence            8877        67778899999999999999999999999999988 777889999999999999999999987632 2


Q ss_pred             CCCchhhHHHHHHHhccCCchhHHHHHHHhhcCCChhHHHHHHhhccCCCCC-----CCCchHHHHHhhcCCChhHHHHH
Q 039990          252 TQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSKIWDLED-----EIEIPSVLKLSYHHLPSHLKRCF  326 (1217)
Q Consensus       252 ~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~-----~~~i~~~l~~sy~~L~~~~k~~f  326 (1217)
                      ..+.++++|++++++|+|+|||+.++|+.|+.+.+..+|+++.+...+....     ...++.++++||+.||++.|.||
T Consensus       337 ~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CF  416 (889)
T KOG4658|consen  337 SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCF  416 (889)
T ss_pred             ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHH
Confidence            3344899999999999999999999999999999999999999876554221     22789999999999999999999


Q ss_pred             HHhhcCCCCcccChHHHHHHHHHhCCcccccccccHHHHHHHHHHHHHhccCCcccC--CCCCeEEEchhHHHHHHHHhc
Q 039990          327 AYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKSS--NNESKFVMHDLVHDLAQWASG  404 (1217)
Q Consensus       327 ~~~~~fp~~~~i~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~--~~~~~~~mh~lv~~~~~~~~~  404 (1217)
                      +|||+||+||.|+++.|+.+||||||+.+.+.+..+++.|.+|+++||+++|++...  .+..+|+|||+|||+|.++|+
T Consensus       417 LycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias  496 (889)
T KOG4658|consen  417 LYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIAS  496 (889)
T ss_pred             HhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhc
Confidence            999999999999999999999999999987778899999999999999999999865  356789999999999999999


Q ss_pred             -----CceEEeecccc--ccccccccCceeEEEEEeccccccccccccccccCccceEccccccccccccccchhhhhhh
Q 039990          405 -----DTCFRLDYEFS--EDRQSKVFEKVRHCSYIRSRRFAVKDKFKFLDEVENLRTFLPIFMEDFFISFCISPMVLSDL  477 (1217)
Q Consensus       405 -----~~~~~~~~~~~--~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~  477 (1217)
                           ++..++....+  .......+..+|+++++.+..    .....-..+++|+||.+..+..      ....+...+
T Consensus       497 ~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~----~~~~~~~~~~~L~tLll~~n~~------~l~~is~~f  566 (889)
T KOG4658|consen  497 DFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKI----EHIAGSSENPKLRTLLLQRNSD------WLLEISGEF  566 (889)
T ss_pred             cccccccceEEECCcCccccccccchhheeEEEEeccch----hhccCCCCCCccceEEEeecch------hhhhcCHHH
Confidence                 55555544211  112234457899999988762    1223334566899999887642      124566778


Q ss_pred             cCCCCcceEEEcCCCC-cccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccC
Q 039990          478 LPKCKKLRVLSLEKDN-IAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELP  556 (1217)
Q Consensus       478 ~~~l~~Lr~L~L~~~~-i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp  556 (1217)
                      |..++.||||||++|. +.          +||.+|++|.+||||+|+++ .+..+|.++++|++|.+|++..+..+..+|
T Consensus       567 f~~m~~LrVLDLs~~~~l~----------~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~  635 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLS----------KLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIP  635 (889)
T ss_pred             HhhCcceEEEECCCCCccC----------cCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheecccccccccccc
Confidence            9999999999999865 45          45788999999999999998 899999999999999999999997777776


Q ss_pred             CCCccCcccccccccccccChhhhHHHHhcCCCCCCeEEE
Q 039990          557 LGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKL  596 (1217)
Q Consensus       557 ~~i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l  596 (1217)
                      ..+..|++|++|.++.............+..+.+|+.+..
T Consensus       636 ~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  636 GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             chhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            6677799999999876554444444455666677776666

>PLN03210 Resistant to P Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>COG3903 Predicted ATPase [General function prediction only] Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>PTZ00202 tuzin; Provisional Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3899 Predicted ATPase [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF14516 AAA_35: AAA-like domain Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK08118 topology modulation protein; Reviewed Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>smart00763 AAA_PrkA PrkA AAA domain Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PRK07261 topology modulation protein; Provisional Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>PRK06696 uridine kinase; Validated Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>PRK15455 PrkA family serine protein kinase; Provisional Back     alignment and domain information
>PRK07667 uridine kinase; Provisional Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2 Back     alignment and domain information
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>PTZ00301 uridine kinase; Provisional Back     alignment and domain information
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars Back     alignment and domain information
>PRK05541 adenylylsulfate kinase; Provisional Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>PRK08233 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05439 pantothenate kinase; Provisional Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PRK06762 hypothetical protein; Provisional Back     alignment and domain information
>PRK05480 uridine/cytidine kinase; Provisional Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>TIGR00150 HI0065_YjeE ATPase, YjeE family Back     alignment and domain information
>PRK06547 hypothetical protein; Provisional Back     alignment and domain information
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>TIGR00235 udk uridine kinase Back     alignment and domain information
>PRK13765 ATP-dependent protease Lon; Provisional Back     alignment and domain information
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR00554 panK_bact pantothenate kinase, bacterial type Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A Back     alignment and domain information
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway Back     alignment and domain information
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK04040 adenylate kinase; Provisional Back     alignment and domain information
>PRK03839 putative kinase; Provisional Back     alignment and domain information
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] Back     alignment and domain information
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>PRK00625 shikimate kinase; Provisional Back     alignment and domain information
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK12608 transcription termination factor Rho; Provisional Back     alignment and domain information
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism] Back     alignment and domain information
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily Back     alignment and domain information
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+) Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length Back     alignment and domain information
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated Back     alignment and domain information
>PRK00131 aroK shikimate kinase; Reviewed Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family Back     alignment and domain information
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A Back     alignment and domain information
>PRK12339 2-phosphoglycerate kinase; Provisional Back     alignment and domain information
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN Back     alignment and domain information
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>PRK06217 hypothetical protein; Validated Back     alignment and domain information
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A Back     alignment and domain information
>PRK15453 phosphoribulokinase; Provisional Back     alignment and domain information
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) Back     alignment and domain information
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D Back     alignment and domain information
>PRK00889 adenylylsulfate kinase; Provisional Back     alignment and domain information
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea Back     alignment and domain information
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] Back     alignment and domain information
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 Back     alignment and domain information
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome Back     alignment and domain information
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] Back     alignment and domain information
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2 Back     alignment and domain information
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>PRK13949 shikimate kinase; Provisional Back     alignment and domain information
>PRK04301 radA DNA repair and recombination protein RadA; Validated Back     alignment and domain information
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis Back     alignment and domain information
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 Back     alignment and domain information
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] Back     alignment and domain information
>PRK14737 gmk guanylate kinase; Provisional Back     alignment and domain information
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK13947 shikimate kinase; Provisional Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>TIGR03263 guanyl_kin guanylate kinase Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>COG4240 Predicted kinase [General function prediction only] Back     alignment and domain information
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis Back     alignment and domain information
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>PRK03846 adenylylsulfate kinase; Provisional Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>PRK14530 adenylate kinase; Provisional Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>TIGR02236 recomb_radA DNA repair and recombination protein RadA Back     alignment and domain information
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional Back     alignment and domain information
>PRK06761 hypothetical protein; Provisional Back     alignment and domain information
>PRK05057 aroK shikimate kinase I; Reviewed Back     alignment and domain information
>PLN02200 adenylate kinase family protein Back     alignment and domain information
>PLN02348 phosphoribulokinase Back     alignment and domain information
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS) Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK13948 shikimate kinase; Provisional Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>PRK14738 gmk guanylate kinase; Provisional Back     alignment and domain information
>TIGR01287 nifH nitrogenase iron protein Back     alignment and domain information
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] Back     alignment and domain information
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins Back     alignment and domain information
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis Back     alignment and domain information
>PLN02318 phosphoribulokinase/uridine kinase Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13975 thymidylate kinase; Provisional Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>PRK00300 gmk guanylate kinase; Provisional Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>PRK13946 shikimate kinase; Provisional Back     alignment and domain information
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PRK13768 GTPase; Provisional Back     alignment and domain information
>PRK10078 ribose 1,5-bisphosphokinase; Provisional Back     alignment and domain information
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase Back     alignment and domain information
>PRK14527 adenylate kinase; Provisional Back     alignment and domain information
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism] Back     alignment and domain information
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D Back     alignment and domain information
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only] Back     alignment and domain information
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>PRK09435 membrane ATPase/protein kinase; Provisional Back     alignment and domain information
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>TIGR00073 hypB hydrogenase accessory protein HypB Back     alignment and domain information
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] Back     alignment and domain information
>PRK12338 hypothetical protein; Provisional Back     alignment and domain information
>PRK04182 cytidylate kinase; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes Back     alignment and domain information
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal Back     alignment and domain information
>PLN03046 D-glycerate 3-kinase; Provisional Back     alignment and domain information
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional Back     alignment and domain information
>PRK13230 nitrogenase reductase-like protein; Reviewed Back     alignment and domain information
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 Back     alignment and domain information
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity Back     alignment and domain information
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor Back     alignment and domain information
>PLN02796 D-glycerate 3-kinase Back     alignment and domain information
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02173 cyt_kin_arch cytidylate kinase, putative Back     alignment and domain information
>PRK13232 nifH nitrogenase reductase; Reviewed Back     alignment and domain information
>PTZ00088 adenylate kinase 1; Provisional Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>smart00072 GuKc Guanylate kinase homologues Back     alignment and domain information
>TIGR02239 recomb_RAD51 DNA repair protein RAD51 Back     alignment and domain information
>PF03215 Rad17: Rad17 cell cycle checkpoint protein Back     alignment and domain information
>KOG0473 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>cd04139 RalA_RalB RalA/RalB subfamily Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13236 nitrogenase reductase; Reviewed Back     alignment and domain information
>PRK03731 aroL shikimate kinase II; Reviewed Back     alignment and domain information
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14532 adenylate kinase; Provisional Back     alignment and domain information
>PRK08356 hypothetical protein; Provisional Back     alignment and domain information
>PRK09825 idnK D-gluconate kinase; Provisional Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) Back     alignment and domain information
>TIGR00750 lao LAO/AO transport system ATPase Back     alignment and domain information
>PRK14531 adenylate kinase; Provisional Back     alignment and domain information
>PRK13231 nitrogenase reductase-like protein; Reviewed Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional Back     alignment and domain information
>cd04120 Rab12 Rab12 subfamily Back     alignment and domain information
>PLN02165 adenylate isopentenyltransferase Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>smart00173 RAS Ras subfamily of RAS small GTPases Back     alignment and domain information
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2 Back     alignment and domain information
>PLN02924 thymidylate kinase Back     alignment and domain information
>PTZ00494 tuzin-like protein; Provisional Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06851 hypothetical protein; Provisional Back     alignment and domain information
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13235 nifH nitrogenase reductase; Reviewed Back     alignment and domain information
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>cd04119 RJL RJL (RabJ-Like) subfamily Back     alignment and domain information
>PRK14528 adenylate kinase; Provisional Back     alignment and domain information
>PLN03186 DNA repair protein RAD51 homolog; Provisional Back     alignment and domain information
>TIGR00041 DTMP_kinase thymidylate kinase Back     alignment and domain information
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X Back     alignment and domain information
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed Back     alignment and domain information
>cd01858 NGP_1 NGP-1 Back     alignment and domain information
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1217
4fcg_A328 Structure Of The Leucine-Rich Repeat Domain Of The 2e-04
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 Back     alignment and structure 
Iteration: 1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 35/155 (22%)
Query: 910  LESLSVQSCPSLTRL-------------------------WSSGR-LPVT------LKCI 937
            L  LS+++CP LT L                         W+  R LP +      LK +
Sbjct: 152  LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 938  QIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLP 997
            +I + S    L         +EEL +  C+ + +    F   A L+ + L  C NL +LP
Sbjct: 212  KIRN-SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270
Query: 998  KGLNNLSHLHRRSIQGCHNLVSLPE--DALPSNVV 1030
              ++ L+ L +  ++GC NL  LP     LP+N +
Sbjct: 271  LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1217
1z6t_A591 APAF-1, apoptotic protease activating factor 1; ca 1e-115
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 2e-83
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 8e-16
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 1e-14
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 4e-12
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 3e-11
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 3e-08
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 6e-08
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 7e-12
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 3e-11
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 3e-05
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 4e-05
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 8e-11
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 8e-11
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 3e-09
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 3e-06
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 3e-09
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 1e-06
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 3e-06
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 5e-04
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 2e-08
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 2e-07
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 6e-05
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 2e-08
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 2e-04
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 3e-04
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 4e-04
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 5e-04
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 6e-04
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 6e-04
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 7e-04
3vq2_A 606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 4e-08
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 2e-07
3t6q_A 606 CD180 antigen; protein-protein complex, leucine ri 4e-06
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 3e-07
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 3e-07
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 3e-05
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 1e-06
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 2e-06
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 1e-05
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 1e-05
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 1e-05
3fxi_A 605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 5e-06
3fxi_A 605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 3e-04
3g06_A622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 6e-06
3g06_A622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 8e-06
3g06_A622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 1e-04
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 6e-06
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 2e-04
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 3e-05
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 4e-04
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 6e-05
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 8e-05
3cvr_A571 Invasion plasmid antigen; leucine rich repeat and 8e-05
3cvr_A571 Invasion plasmid antigen; leucine rich repeat and 2e-04
3cvr_A571 Invasion plasmid antigen; leucine rich repeat and 4e-04
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 3e-04
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 3e-04
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 3e-04
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 3e-04
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 5e-04
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 Back     alignment and structure
 Score =  369 bits (949), Expect = e-115
 Identities = 77/493 (15%), Positives = 157/493 (31%), Gaps = 63/493 (12%)

Query: 31  RSKIKAISSRLEELCKRRTVLGLEKIAGGSTHSATVRRRPPTTCLTSEPAVY-GRNEDKA 89
               K +++ L +     +    +    G T    VR       +   P V+  R +   
Sbjct: 77  HEGYKDLAALLHDGIPVVSSSSGKDSVSGITSY--VRTVLCEGGVPQRPVVFVTRKKLVN 134

Query: 90  RILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND-KLTDDFKP--KAWVCVSDD 146
            I   + K           + + GM G GK+ LA E   D  L +   P    WV V   
Sbjct: 135 AIQQKLSKLKG----EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190

Query: 147 FDI--LRISKAILESITRSSCGLT----DLNSVQLKLKEAVFKKNKSY-----ELWQALK 195
                L   + +   + +          ++   + +L+  + +K+        ++W    
Sbjct: 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD--S 248

Query: 196 SPFMAGAPGSRIIVTTRSMDVALKMGSGKN--YELKHLSDDDCWSVFLNHAFEGIDTGTQ 253
               A     +I++TTR   V   +   K        L  +    +              
Sbjct: 249 WVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKA---- 304

Query: 254 GNFESTRQRVVAKCKGLPLAARALGGLLRSK-QRVDEWRAILNSKIWDL------EDEIE 306
            +       ++ +CKG PL    +G LLR    R + +   L +K +         D   
Sbjct: 305 -DLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEA 363

Query: 307 IPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWG 366
           +   + +S   L   +K  +   +IL KD +   + L +LW  E                
Sbjct: 364 LDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEE------------V 411

Query: 367 SEYFHDLLSRSMFQKSSNNESK-FVMHDLVHDLAQWASGDTCFRLDYEFSEDRQSKVFEK 425
            +   + +++S+     N +S  + +HDL  D         C +L     +  +  + + 
Sbjct: 412 EDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLT---EKNCSQLQ----DLHKKIITQF 464

Query: 426 VRHCSYIRSRRFAVKDKFKF------LDEVENLRTFLPIFMEDFFISFCISPMVLSDLLP 479
            R+              + +      +   +  +    +     +I      +  + L+ 
Sbjct: 465 QRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTELVGPAHLIH 524

Query: 480 KCKKLRVLSLEKD 492
           +  + R +  EKD
Sbjct: 525 EFVEYRHILDEKD 537
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1217
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 100.0
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 100.0
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 100.0
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 100.0
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 100.0
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 100.0
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 100.0
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 100.0
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 100.0
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 100.0
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 100.0
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 99.98
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 99.97
1z6t_A591 APAF-1, apoptotic protease activating factor 1; ca 99.97
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 99.96
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 99.96
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 99.96
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 99.96
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 99.96
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 99.95
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 99.95
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 99.95
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 99.95
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 99.94
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 99.94
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 99.93
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 99.93
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 99.93
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 99.93
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 99.92
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 99.89
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 99.89
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 99.89
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 99.88
1o6v_A466 Internalin A; bacterial infection, extracellular r 99.88
1o6v_A466 Internalin A; bacterial infection, extracellular r 99.87
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.86
2id5_A 477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 99.85
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.85
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 99.84
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 99.83
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 99.83
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 99.81
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 99.8
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.8
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 99.78
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 99.78
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 99.77
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 99.76
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 99.74
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.74
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 99.73
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 99.73
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 99.72
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 99.71
3zyj_A 440 Leucine-rich repeat-containing protein 4C; cell ad 99.71
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 99.71
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 99.71
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 99.69
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 99.69
3g06_A622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 99.68
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 99.68
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 99.66
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 99.66
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 99.66
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 99.64
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 99.63
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 99.63
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 99.63
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 99.63
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 99.62
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 99.62
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 99.6
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 99.6
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 99.59
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 99.57
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 99.57
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 99.56
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 99.55
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 99.53
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 99.53
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 99.52
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 99.52
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 99.51
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 99.5
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 99.5
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 99.46
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 99.46
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 99.45
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 99.45
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.44
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 99.42
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.42
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 99.36
3m19_A251 Variable lymphocyte receptor A diversity region; a 99.36
3m19_A251 Variable lymphocyte receptor A diversity region; a 99.34
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 99.34
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 99.33
2fna_A357 Conserved hypothetical protein; structural genomic 99.31
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 99.29
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 99.28
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 99.28
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 99.27
4ezg_A197 Putative uncharacterized protein; internalin-A, le 99.25
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 99.22
1m9s_A605 Internalin B; cell invasion, GW domains, SH3 domai 99.21
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 99.19
4ezg_A197 Putative uncharacterized protein; internalin-A, le 99.19
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 99.18
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 99.17
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 99.17
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 99.13
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 99.07
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 99.06
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 99.05
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 99.05
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 99.05
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 99.05
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 99.05
3e6j_A229 Variable lymphocyte receptor diversity region; var 99.05
2xot_A 361 Amphoterin-induced protein 1; cell adhesion, neuro 99.04
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 99.04
2v1u_A387 Cell division control protein 6 homolog; DNA repli 99.04
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 99.03
3e6j_A229 Variable lymphocyte receptor diversity region; var 99.02
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.0
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 99.0
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 98.98
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 98.96
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 98.94
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 98.91
4fdw_A401 Leucine rich hypothetical protein; putative cell s 98.88
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 98.86
4fdw_A401 Leucine rich hypothetical protein; putative cell s 98.85
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.84
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 98.81
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.79
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 98.77
1w8a_A192 SLIT protein; signaling protein, secreted protein, 98.77
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.74
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 98.72
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 98.72
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 98.71
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 98.69
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 98.68
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 98.65
4b8c_D727 Glucose-repressible alcohol dehydrogenase transcr 98.65
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 98.64
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 98.63
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 98.62
1w8a_A192 SLIT protein; signaling protein, secreted protein, 98.6
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 98.57
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 98.54
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 98.52
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 98.48
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 98.43
2chg_A226 Replication factor C small subunit; DNA-binding pr 98.41
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 98.38
4gt6_A394 Cell surface protein; leucine rich repeats, putati 98.26
4h09_A379 Hypothetical leucine rich repeat protein; two LRR_ 98.24
2ifg_A347 High affinity nerve growth factor receptor; TRK, T 98.16
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 98.14
4gt6_A394 Cell surface protein; leucine rich repeats, putati 98.07
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 97.96
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 97.93
2ifg_A 347 High affinity nerve growth factor receptor; TRK, T 97.92
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 97.89
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 97.84
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 97.83
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 97.83
4h09_A379 Hypothetical leucine rich repeat protein; two LRR_ 97.8
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 97.72
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 97.68
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 97.66
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 97.64
2chq_A319 Replication factor C small subunit; DNA-binding pr 97.57
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 97.51
3bos_A242 Putative DNA replication factor; P-loop containing 97.49
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 97.29
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 97.24
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 97.2
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 97.19
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 97.18
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 97.14
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 97.08
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 97.07
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 97.06
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 97.03
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 97.01
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 97.01
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 96.97
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 96.95
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 96.88
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 96.86
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 96.84
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 96.82
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 96.8
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 96.8
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 96.79
3pvs_A447 Replication-associated recombination protein A; ma 96.75
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 96.5
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 96.49
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 96.48
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 96.43
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 96.38
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 96.35
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 96.35
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 96.16
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 96.13
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 96.07
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 95.94
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 95.84
2gno_A305 DNA polymerase III, gamma subunit-related protein; 95.78
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 95.77
3co5_A143 Putative two-component system transcriptional RES 95.61
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 95.52
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 95.45
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 95.32
1rz3_A201 Hypothetical protein rbstp0775; MCSG, structural g 95.24
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 95.21
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 94.89
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 94.51
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 94.38
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 94.35
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 94.08
1gvn_B287 Zeta; postsegregational killing system, plasmid; 1 93.99
3c8u_A208 Fructokinase; YP_612366.1, putative fructose trans 93.99
1ojl_A304 Transcriptional regulatory protein ZRAR; response 93.98
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 93.97
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 93.86
2r44_A331 Uncharacterized protein; putative ATPase, structur 93.84
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 93.81
3nbx_X500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 93.72
2r62_A268 Cell division protease FTSH homolog; ATPase domain 93.69
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 93.66
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 93.61
1ex7_A186 Guanylate kinase; substrate-induced FIT, domain mo 93.55
3rfe_A130 Platelet glycoprotein IB beta chain; platelet surf 93.55
2c9o_A456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 93.53
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 93.48
3tqc_A321 Pantothenate kinase; biosynthesis of cofactors, pr 93.46
1odf_A290 YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser 93.42
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 93.41
2p5t_B253 PEZT; postsegregational killing system, phosphoryl 93.36
3vaa_A199 Shikimate kinase, SK; structural genomics, center 93.2
3fwy_A314 Light-independent protochlorophyllide reductase I 93.18
2ga8_A359 Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn 93.13
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 93.03
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 93.02
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 93.0
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 92.83
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 92.8
1kgd_A180 CASK, peripheral plasma membrane CASK; maguk, guan 92.79
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 92.76
3rfe_A130 Platelet glycoprotein IB beta chain; platelet surf 92.72
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 92.7
1kag_A173 SKI, shikimate kinase I; transferase, structural g 92.65
3uie_A200 Adenylyl-sulfate kinase 1, chloroplastic; rossmann 92.57
3t61_A202 Gluconokinase; PSI-biology, structural genomics, p 92.52
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 92.51
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 92.46
1uj2_A252 Uridine-cytidine kinase 2; alpha/beta mononucleoti 92.39
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 92.29
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 92.28
1ukz_A203 Uridylate kinase; transferase; HET: ADP AMP; 1.90A 92.27
3tlx_A243 Adenylate kinase 2; structural genomics, structura 92.27
1tev_A196 UMP-CMP kinase; ploop, NMP binding region, LID reg 92.24
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 92.23
1xjc_A169 MOBB protein homolog; structural genomics, midwest 92.22
2plr_A213 DTMP kinase, probable thymidylate kinase; TMP-bind 92.21
1y63_A184 LMAJ004144AAA protein; structural genomics, protei 92.2
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 92.11
1via_A175 Shikimate kinase; structural genomics, transferase 92.04
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 92.03
3tau_A208 Guanylate kinase, GMP kinase; structural genomics, 92.03
3a4m_A260 L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m 92.02
1uf9_A203 TT1252 protein; P-loop, nucleotide binding domain, 91.95
2c95_A196 Adenylate kinase 1; transferase, AP4A, nucleotide 91.91
2bdt_A189 BH3686; alpha-beta protein, structural genomics, P 91.91
2qt1_A207 Nicotinamide riboside kinase 1; non-protein kinase 91.88
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 91.88
3umf_A217 Adenylate kinase; rossmann fold, transferase; 2.05 91.86
2hf9_A226 Probable hydrogenase nickel incorporation protein 91.74
2kjq_A149 DNAA-related protein; solution structure, NESG, st 91.71
2iyv_A184 Shikimate kinase, SK; transferase, aromatic amino 91.68
2jaq_A205 Deoxyguanosine kinase; transferase, deoxyribonucle 91.64
2yvu_A186 Probable adenylyl-sulfate kinase; transferase, str 91.58
3cm0_A186 Adenylate kinase; ATP-binding, cytoplasm, nucleoti 91.54
4gp7_A171 Metallophosphoesterase; polynucleotide kinase phos 91.53
2bwj_A199 Adenylate kinase 5; phosphoryl transfer reaction, 91.51
1e6c_A173 Shikimate kinase; phosphoryl transfer, ADP, shikim 91.5
2qgz_A308 Helicase loader, putative primosome component; str 91.48
2cdn_A201 Adenylate kinase; phosphoryl transfer, associative 91.46
2if2_A204 Dephospho-COA kinase; alpha-beta protein, structur 91.46
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 91.45
1qf9_A194 UMP/CMP kinase, protein (uridylmonophosphate/cytid 91.44
1jjv_A206 Dephospho-COA kinase; P-loop nucleotide-binding fo 91.36
1tue_A212 Replication protein E1; helicase, replication, E1E 91.35
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 91.34
2vli_A183 Antibiotic resistance protein; transferase, tunica 91.33
3ney_A197 55 kDa erythrocyte membrane protein; structural ge 91.32
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 91.3
3a00_A186 Guanylate kinase, GMP kinase; domain movement, dim 91.26
1aky_A220 Adenylate kinase; ATP:AMP phosphotransferase, myok 91.23
2grj_A192 Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp 91.2
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 91.2
3tr0_A205 Guanylate kinase, GMP kinase; purines, pyrimidines 91.16
3asz_A211 Uridine kinase; cytidine phosphorylation, transfer 91.15
2pt5_A168 Shikimate kinase, SK; aromatic amino acid biosynth 91.14
2j41_A207 Guanylate kinase; GMP, GMK, transferase, ATP-bindi 91.13
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 91.05
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 90.99
1cke_A227 CK, MSSA, protein (cytidine monophosphate kinase); 90.98
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 90.98
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 90.97
2cvh_A220 DNA repair and recombination protein RADB; filamen 90.96
2wsm_A221 Hydrogenase expression/formation protein (HYPB); m 90.95
1nn5_A215 Similar to deoxythymidylate kinase (thymidylate K; 90.77
1lvg_A198 Guanylate kinase, GMP kinase; transferase; HET: AD 90.72
2z43_A324 DNA repair and recombination protein RADA; archaea 90.72
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 90.7
2wwf_A212 Thymidilate kinase, putative; transferase, malaria 90.68
1zd8_A227 GTP:AMP phosphotransferase mitochondrial; ATP:AMP 90.67
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 90.67
2pbr_A195 DTMP kinase, thymidylate kinase; transferase, nucl 90.61
2bbw_A246 Adenylate kinase 4, AK4; nucleotide kinase, nucleo 90.59
2xxa_A433 Signal recognition particle protein; protein trans 90.54
2f6r_A281 COA synthase, bifunctional coenzyme A synthase; 18 90.45
2r8r_A228 Sensor protein; KDPD, PFAM02702, MCSG, structural 90.42
3fb4_A216 Adenylate kinase; psychrophIle, phosphotransferase 90.35
1zak_A222 Adenylate kinase; ATP:AMP-phosphotransferase, tran 90.29
3p32_A355 Probable GTPase RV1496/MT1543; structural genomics 90.27
3aez_A312 Pantothenate kinase; transferase, homodimer, COA b 90.26
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 90.26
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 90.24
3d3q_A340 TRNA delta(2)-isopentenylpyrophosphate transferase 90.22
3dl0_A216 Adenylate kinase; phosphotransferase, zinc coordin 90.18
4a74_A231 DNA repair and recombination protein RADA; hydrola 90.14
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 90.06
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 90.06
1gtv_A214 TMK, thymidylate kinase; transferase, transferase 90.05
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 90.02
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 89.98
2pez_A179 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 89.82
2jeo_A245 Uridine-cytidine kinase 1; UCK, transferase, ATP-b 89.8
1m7g_A211 Adenylylsulfate kinase; APS kinase, transferase, s 89.74
2f1r_A171 Molybdopterin-guanine dinucleotide biosynthesis pr 89.72
1vht_A218 Dephospho-COA kinase; structural genomics, transfe 89.7
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 89.66
3exa_A322 TRNA delta(2)-isopentenylpyrophosphate transferase 89.66
1htw_A158 HI0065; nucleotide-binding fold, structural genomi 89.66
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 89.6
2ged_A193 SR-beta, signal recognition particle receptor beta 89.59
4e22_A252 Cytidylate kinase; P-loop, CMP/ATP binding, transf 89.56
1np6_A174 Molybdopterin-guanine dinucleotide biosynthesis pr 89.55
3crm_A323 TRNA delta(2)-isopentenylpyrophosphate transferase 89.54
3end_A307 Light-independent protochlorophyllide reductase ir 89.5
1vma_A306 Cell division protein FTSY; TM0570, structural gen 89.49
1znw_A207 Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans 89.44
2qmh_A205 HPR kinase/phosphorylase; V267F mutation, ATP-bind 89.44
1z6g_A218 Guanylate kinase; structural genomics, SGC, struct 89.38
3foz_A316 TRNA delta(2)-isopentenylpyrophosphate transferas; 89.37
1u94_A356 RECA protein, recombinase A; homologous recombinat 89.36
3nwj_A250 ATSK2; P loop, shikimate, nucleoside monophosphate 89.33
1sq5_A308 Pantothenate kinase; P-loop, transferase; HET: PAU 89.25
1rj9_A304 FTSY, signal recognition protein; SRP-GTPase domai 89.21
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 89.14
1g41_A444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 89.14
1s96_A219 Guanylate kinase, GMP kinase; E.coli, dimer, SAD, 89.11
3r20_A233 Cytidylate kinase; structural genomics, seattle st 88.87
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 88.85
3m6a_A543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 88.81
3ake_A208 Cytidylate kinase; CMP kinase, CMP complex, open c 88.78
2i3b_A189 HCR-ntpase, human cancer-related ntpase; AAA, ross 88.75
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 88.74
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 88.73
3be4_A217 Adenylate kinase; malaria, cryptosporidium parvum 88.73
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 88.73
2dhr_A499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 88.73
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 88.72
1ak2_A233 Adenylate kinase isoenzyme-2; nucleoside monophosp 88.68
1e4v_A214 Adenylate kinase; transferase(phosphotransferase); 88.63
2xb4_A223 Adenylate kinase; ATP-binding, nucleotide-binding, 88.63
1yrb_A262 ATP(GTP)binding protein; GTPase, P-loop, rossman f 88.57
3lv8_A236 DTMP kinase, thymidylate kinase; structural genomi 88.54
3sr0_A206 Adenylate kinase; phosphoryl transfer analogue, AL 88.45
3b9q_A302 Chloroplast SRP receptor homolog, alpha subunit CP 88.4
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 88.23
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 88.08
2wji_A165 Ferrous iron transport protein B homolog; membrane 88.04
4eaq_A229 DTMP kinase, thymidylate kinase; structural genomi 87.99
4tmk_A213 Protein (thymidylate kinase); ATP:DTMP phosphotran 87.89
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 87.85
3zvl_A416 Bifunctional polynucleotide phosphatase/kinase; hy 87.81
1ltq_A301 Polynucleotide kinase; phosphatase, alpha/beta, P- 87.77
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 87.75
3tif_A235 Uncharacterized ABC transporter ATP-binding prote; 87.75
1a7j_A290 Phosphoribulokinase; transferase, calvin cycle; 2. 87.75
3lnc_A231 Guanylate kinase, GMP kinase; ALS collaborative cr 87.69
1cp2_A269 CP2, nitrogenase iron protein; oxidoreductase; 1.9 87.63
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 87.61
2dyk_A161 GTP-binding protein; GTPase, ribosome-binding prot 87.6
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 87.59
2j37_W504 Signal recognition particle 54 kDa protein (SRP54) 87.37
4g1u_C266 Hemin import ATP-binding protein HMUV; membrane tr 87.31
3gfo_A275 Cobalt import ATP-binding protein CBIO 1; structur 87.27
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 87.24
2onk_A240 Molybdate/tungstate ABC transporter, ATP-binding p 87.23
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 87.18
1xp8_A366 RECA protein, recombinase A; recombination, radior 87.14
2og2_A359 Putative signal recognition particle receptor; nuc 87.11
1oix_A191 RAS-related protein RAB-11A; small G protein, intr 87.1
3io5_A333 Recombination and repair protein; storage dimer, i 87.04
1mv5_A243 LMRA, multidrug resistance ABC transporter ATP-bin 87.03
1b0u_A262 Histidine permease; ABC transporter, transport pro 86.99
2zej_A184 Dardarin, leucine-rich repeat kinase 2; parkinson' 86.99
1svm_A377 Large T antigen; AAA+ fold, viral protein; HET: AT 86.91
2v3c_C432 SRP54, signal recognition 54 kDa protein; nucleoti 86.85
2afh_E289 Nitrogenase iron protein 1; nitrogen fixation, iro 86.84
1j8m_F297 SRP54, signal recognition 54 kDa protein; signalin 86.82
3iqw_A334 Tail-anchored protein targeting factor GET3; ATPas 86.82
2pcj_A224 ABC transporter, lipoprotein-releasing system ATP- 86.8
4edh_A213 DTMP kinase, thymidylate kinase; structural genomi 86.74
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 86.64
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 86.53
2ocp_A241 DGK, deoxyguanosine kinase; protein-nucleotide com 86.48
3eph_A409 TRNA isopentenyltransferase; transferase, alternat 86.46
2ff7_A247 Alpha-hemolysin translocation ATP-binding protein 86.36
2lkc_A178 Translation initiation factor IF-2; NMR {Geobacill 86.33
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 86.29
2cbz_A237 Multidrug resistance-associated protein 1; ABC pro 86.28
3b85_A208 Phosphate starvation-inducible protein; PHOH2, ATP 86.26
3io3_A348 DEHA2D07832P; chaperone, membrane traffic, ATPase; 86.19
3kjh_A254 CO dehydrogenase/acetyl-COA synthase complex, acce 86.06
2f9l_A199 RAB11B, member RAS oncogene family; RAB11B GTPase, 86.04
3ld9_A223 DTMP kinase, thymidylate kinase; ssgcid, NIH, niai 86.0
1q3t_A236 Cytidylate kinase; nucleotide monophosphate kinase 85.97
2ixe_A271 Antigen peptide transporter 1; ABC ATPase, hydrola 85.94
3cwq_A209 Para family chromosome partitioning protein; alpha 85.81
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 85.69
1sgw_A214 Putative ABC transporter; structural genomics, P p 85.68
2ce2_X166 GTPase HRAS; signaling protein, guanine nucleotide 85.66
4dzz_A206 Plasmid partitioning protein PARF; deviant walker 85.62
1ji0_A240 ABC transporter; ATP binding protein, structural g 85.61
2olj_A263 Amino acid ABC transporter; ABC domain, ATPase, hy 85.56
2wjg_A188 FEOB, ferrous iron transport protein B homolog; me 85.54
2d2e_A250 SUFC protein; ABC-ATPase, SUF protein, 310-helix, 85.53
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 85.38
1z2a_A168 RAS-related protein RAB-23; RAB GTPase, vesicular 85.34
4dkx_A216 RAS-related protein RAB-6A; GTP binding fold, memb 85.33
2pze_A229 Cystic fibrosis transmembrane conductance regulat; 85.3
3con_A190 GTPase NRAS; structural genomics consortium, SGC, 85.29
2v9p_A305 Replication protein E1; AAA+ molecular motor, DNA 85.27
1g6h_A257 High-affinity branched-chain amino acid transport 85.27
2zu0_C267 Probable ATP-dependent transporter SUFC; iron-sulf 85.26
1vpl_A256 ABC transporter, ATP-binding protein; TM0544, stru 85.11
2eyu_A261 Twitching motility protein PILT; pilus retraction 85.07
3c5c_A187 RAS-like protein 12; GDP, GTPase, structural genom 84.96
1c1y_A167 RAS-related protein RAP-1A; GTP-binding proteins, 84.94
3gmt_A230 Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle 84.91
2ghi_A260 Transport protein; multidrug resistance protein, M 84.9
1u8z_A168 RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH 84.86
1m7b_A184 RND3/RHOE small GTP-binding protein; small GTPase, 84.8
1z08_A170 RAS-related protein RAB-21; RAB GTPase, vesicular 84.8
2qi9_C249 Vitamin B12 import ATP-binding protein BTUD; inner 84.76
2gj8_A172 MNME, tRNA modification GTPase TRME; G-domain dime 84.69
1p5z_B263 DCK, deoxycytidine kinase; nucleoside kinase, P-lo 84.68
2ffh_A425 Protein (FFH); SRP54, signal recognition particle, 84.45
2nzj_A175 GTP-binding protein REM 1; GDP/GTP binding, GTP hy 84.44
2nq2_C253 Hypothetical ABC transporter ATP-binding protein H 84.39
2yz2_A266 Putative ABC transporter ATP-binding protein TM_0; 84.28
3tqf_A181 HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co 84.24
2axn_A520 6-phosphofructo-2-kinase/fructose-2,6- biphosphata 84.23
2ihy_A279 ABC transporter, ATP-binding protein; ATPase, ABC 84.21
1kao_A167 RAP2A; GTP-binding protein, small G protein, GDP, 84.21
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 84.11
3ihw_A184 Centg3; RAS, centaurin, GTPase, structural genomic 84.09
2vp4_A230 Deoxynucleoside kinase; ATP-binding, DNA synthesis 84.08
1g8f_A511 Sulfate adenylyltransferase; alpha-beta protein, b 84.06
1svi_A195 GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro 84.03
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 83.98
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 83.97
2aka_B299 Dynamin-1; fusion protein, GTPase domain, myosin, 83.96
3q72_A166 GTP-binding protein RAD; G-domain, CAV2 beta, sign 83.95
1u0j_A267 DNA replication protein; AAA+ protein, P-loop atpa 83.9
2erx_A172 GTP-binding protein DI-RAS2; GTP hydrolysis, trans 83.88
4dsu_A189 GTPase KRAS, isoform 2B; small G-protein, signalin 83.84
3kkq_A183 RAS-related protein M-RAS; GTP-binding, GTPase, si 83.84
1z0j_A170 RAB-22, RAS-related protein RAB-22A; RAB GTPase, R 83.67
1nrj_B218 SR-beta, signal recognition particle receptor beta 83.66
1ek0_A170 Protein (GTP-binding protein YPT51); vesicular tra 83.6
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 83.57
3nh6_A306 ATP-binding cassette SUB-family B member 6, mitoc; 83.48
1jr3_D343 DNA polymerase III, delta subunit; processivity, p 83.48
1r8s_A164 ADP-ribosylation factor 1; protein transport/excha 83.4
3q85_A169 GTP-binding protein REM 2; G-domain, CAV2 beta, si 83.31
2ck3_D482 ATP synthase subunit beta\, mitochondrial; hydrola 83.29
2hxs_A178 RAB-26, RAS-related protein RAB-28; GTPase, signal 83.29
3sop_A270 Neuronal-specific septin-3; hydrolase; HET: GDP; 2 83.12
1wms_A177 RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p 83.08
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
Probab=100.00  E-value=7e-44  Score=448.74  Aligned_cols=652  Identities=14%  Similarity=0.069  Sum_probs=384.6

Q ss_pred             hhhhcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccc--cccccccccEEeecCCcc
Q 039990          474 LSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPS--SIGNLVNLHHLDIEGADR  551 (1217)
Q Consensus       474 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~  551 (1217)
                      ++..|.+++.|++++++.+.+..+          |..|+++++|++|+|++|.....+|.  .++++++|++|++++|..
T Consensus        69 l~~~l~~L~~L~~l~~~~~~~~~l----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l  138 (768)
T 3rgz_A           69 VSSSLLSLTGLESLFLSNSHINGS----------VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL  138 (768)
T ss_dssp             HHHHTTTCTTCCEEECTTSCEEEC----------CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE
T ss_pred             cChhHhccCcccccCCcCCCcCCC----------chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCcc
Confidence            456688899999999999887644          45688899999999999955556887  899999999999999944


Q ss_pred             ccccCCCC-ccCcccccccccccccChhhhHH-HHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEee
Q 039990          552 LCELPLGM-KELKCLRTLTDFINVIDSQEANE-AMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISY  629 (1217)
Q Consensus       552 l~~lp~~i-~~L~~L~~L~~~~n~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~  629 (1217)
                      ...+|..+ .++++|++|++..|......... ..+.++++|+.|+++.+....        ......+++|+.|+++++
T Consensus       139 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~l~~L~~L~Ls~n  210 (768)
T 3rgz_A          139 DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG--------DVDVSRCVNLEFLDVSSN  210 (768)
T ss_dssp             ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEES--------CCBCTTCTTCCEEECCSS
T ss_pred             CCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccc--------cCCcccCCcCCEEECcCC
Confidence            44556655 88999999998877665433222 236778888888876443211        011234566666666666


Q ss_pred             CCCCCCCCcCCCCcCcccEEEEecCCCCCCCC-CCCCcCCCCeeEEcCCCCceEeCccccCCCCcccCcccceeeccccc
Q 039990          630 GSTRFPSWVGDPSFSNVAVLKLENCDRCTSLP-SLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDLQ  708 (1217)
Q Consensus       630 ~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  708 (1217)
                      .....+..+.  .+++|+.|++++|.....+| .++.+++|++|+++++.....++..        .+++|+.|+++++.
T Consensus       211 ~l~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~l~~L~~L~L~~n~  280 (768)
T 3rgz_A          211 NFSTGIPFLG--DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--------PLKSLQYLSLAENK  280 (768)
T ss_dssp             CCCSCCCBCT--TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--------CCTTCCEEECCSSE
T ss_pred             cCCCCCcccc--cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--------ccCCCCEEECcCCc
Confidence            5554332233  25666666666655443444 3666666666666654322222111        25566666666554


Q ss_pred             cccccccCCccccccc-cCccccEEeecCCCCccCCCCC---CCCCccEEEEccCCCc---cc-cCCCCCcccEEEEccC
Q 039990          709 EWEHWEPNRENDEHVQ-AFSHLRKLSIKRCPKLSGRLPN---HLPSLEEIVIAGCMHL---AV-SLPSLPALCTMEIDGC  780 (1217)
Q Consensus       709 ~l~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~L~~~~p~---~l~~L~~L~l~~c~~l---~~-~~~~l~~L~~L~l~~~  780 (1217)
                      ......      ..+. .+++|+.|++++| .+.+.+|.   .+++|+.|++++|...   .. .+..+++|++|++++|
T Consensus       281 l~~~ip------~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          281 FTGEIP------DFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             EEESCC------CCSCTTCTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred             cCCccC------HHHHhhcCcCCEEECcCC-cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence            321111      0010 2356666666665 33333443   3455666666655332   11 1344555555555554


Q ss_pred             CCccccCCCCCCCccceeecccccccccccccccccc-ceeeeccccCCCccccccccccC--CCcccEEEEeccCCccc
Q 039990          781 KRLVCDGPSESKSLNEMALCNISKFENWSMENLVRFG-FYSVDTSKDCNALTSLTDGMIHN--NVRLEVLRIIGCHSLKS  857 (1217)
Q Consensus       781 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~l~~L~l~~c~~l~~l~~~~~~~--l~~L~~L~l~~c~~l~~  857 (1217)
                      ......                       +..+..+. .|+.|.+++|.-...+|.. +..  +++|++|++++|.....
T Consensus       354 ~l~~~~-----------------------p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~  409 (768)
T 3rgz_A          354 EFSGEL-----------------------PESLTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGFTGK  409 (768)
T ss_dssp             EEEECC-----------------------CTTHHHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSSEEEEE
T ss_pred             ccCccc-----------------------cHHHHhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCCccccc
Confidence            322111                       11112222 3444444443322233332 111  45555555555433322


Q ss_pred             ccc-cCCCCCccEEEecccCcccccccCCCCCCCCCcccccccCCCCCcccccccceEeccCCCCcccccCCCCCCCccE
Q 039990          858 IAR-EHLPSSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKC  936 (1217)
Q Consensus       858 i~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~  936 (1217)
                      ++. ....++|+.|++++|...+.+|...                   ..+++|+.|.+++|.....++.....+++|+.
T Consensus       410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-------------------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  470 (768)
T 3rgz_A          410 IPPTLSNCSELVSLHLSFNYLSGTIPSSL-------------------GSLSKLRDLKLWLNMLEGEIPQELMYVKTLET  470 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGG-------------------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             cCHHHhcCCCCCEEECcCCcccCcccHHH-------------------hcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence            222 1223455555555554333222111                   11334666666665443344333444557777


Q ss_pred             EeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCC
Q 039990          937 IQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHN 1016 (1217)
Q Consensus       937 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 1016 (1217)
                      |++++|.....+|..+.++++|+.|++++|.....+|..+..+++|++|+|++|.....+|..+..+++|+.|++++|+.
T Consensus       471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            77777776667777777777788888877776667777777777788888887766667777777777888888877765


Q ss_pred             CcccCCCCCC-CCcce---------EEEccCcCccc--------------CCCCCCCCCcceEeeccCCCccccCCC-CC
Q 039990         1017 LVSLPEDALP-SNVVD---------VSIEDCDKLKA--------------PLPTGKLSSLQLLTLIECPGIVFFPEE-GL 1071 (1217)
Q Consensus      1017 l~~l~~~~~~-~~L~~---------L~l~~~~~l~~--------------~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~ 1071 (1217)
                      ...+|...+. ..+..         .++.+......              +.....++.+..+++..+..-+.+|.. ..
T Consensus       551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~  630 (768)
T 3rgz_A          551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN  630 (768)
T ss_dssp             ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred             CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence            5555542111 11111         11111110000              000122333344444433222333333 45


Q ss_pred             CCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCccc
Q 039990         1072 STNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLS 1151 (1217)
Q Consensus      1072 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~ 1151 (1217)
                      +++|++|++++|...+.+|. .++++++|+.|++++|...+.+|.   .+..+++|++|++++++--+.+| ..+.++++
T Consensus       631 l~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~---~l~~L~~L~~LdLs~N~l~g~ip-~~l~~l~~  705 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPD---EVGDLRGLNILDLSSNKLDGRIP-QAMSALTM  705 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSCCEECCC-GGGGGCCC
T ss_pred             cccccEEECcCCcccccCCH-HHhccccCCEEeCcCCccCCCCCh---HHhCCCCCCEEECCCCcccCcCC-hHHhCCCC
Confidence            78999999999998888876 689999999999999988888887   56678999999999954444777 88999999


Q ss_pred             ccccccccccCcccCCCCCCCCccceEeccCCcchH----HhhcCCCCCCCCcccccceEE
Q 039990         1152 LEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCPLLE----NKFKKGKGQEWPKIAHIPSVL 1208 (1217)
Q Consensus      1152 L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c~~l~----~~~~~~~~~~~~~i~~i~~~~ 1208 (1217)
                      |++|++++|+..+.+|.++.+.++....+.+||.+.    ..|....+.+|++|+|+++++
T Consensus       706 L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~  766 (768)
T 3rgz_A          706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH  766 (768)
T ss_dssp             CSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred             CCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence            999999999888899998777788878888886543    268999999999999999875
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} Back     alignment and structure
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Back     alignment and structure
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A Back     alignment and structure
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Back     alignment and structure
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} Back     alignment and structure
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* Back     alignment and structure
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Back     alignment and structure
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Back     alignment and structure
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 Back     alignment and structure
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Back     alignment and structure
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Back     alignment and structure
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Back     alignment and structure
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 Back     alignment and structure
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Back     alignment and structure
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Back     alignment and structure
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} Back     alignment and structure
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Back     alignment and structure
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Back     alignment and structure
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Back     alignment and structure
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* Back     alignment and structure
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Back     alignment and structure
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Back     alignment and structure
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Back     alignment and structure
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Back     alignment and structure
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Back     alignment and structure
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Back     alignment and structure
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Back     alignment and structure
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Back     alignment and structure
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Back     alignment and structure
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Back     alignment and structure
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} Back     alignment and structure
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Back     alignment and structure
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Back     alignment and structure
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Back     alignment and structure
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} Back     alignment and structure
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} Back     alignment and structure
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Back     alignment and structure
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Back     alignment and structure
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* Back     alignment and structure
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Back     alignment and structure
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Back     alignment and structure
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Back     alignment and structure
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Back     alignment and structure
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} Back     alignment and structure
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Back     alignment and structure
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} Back     alignment and structure
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A Back     alignment and structure
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Back     alignment and structure
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* Back     alignment and structure
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Back     alignment and structure
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Back     alignment and structure
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Back     alignment and structure
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Back     alignment and structure
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* Back     alignment and structure
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Back     alignment and structure
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Back     alignment and structure
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Back     alignment and structure
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Back     alignment and structure
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Back     alignment and structure
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* Back     alignment and structure
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Back     alignment and structure
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Back     alignment and structure
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* Back     alignment and structure
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Back     alignment and structure
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Back     alignment and structure
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Back     alignment and structure
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} Back     alignment and structure
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Back     alignment and structure
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Back     alignment and structure
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Back     alignment and structure
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Back     alignment and structure
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Back     alignment and structure
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A Back     alignment and structure
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Back     alignment and structure
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* Back     alignment and structure
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Back     alignment and structure
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Back     alignment and structure
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Back     alignment and structure
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Back     alignment and structure
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} Back     alignment and structure
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* Back     alignment and structure
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Back     alignment and structure
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 Back     alignment and structure
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Back     alignment and structure
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Back     alignment and structure
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Back     alignment and structure
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Back     alignment and structure
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Back     alignment and structure
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Back     alignment and structure
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Back     alignment and structure
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* Back     alignment and structure
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Back     alignment and structure
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Back     alignment and structure
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* Back     alignment and structure
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Back     alignment and structure
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Back     alignment and structure
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Back     alignment and structure
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Back     alignment and structure
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Back     alignment and structure
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Back     alignment and structure
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Back     alignment and structure
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Back     alignment and structure
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Back     alignment and structure
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Back     alignment and structure
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Back     alignment and structure
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... Back     alignment and structure
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Back     alignment and structure
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Back     alignment and structure
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Back     alignment and structure
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Back     alignment and structure
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} Back     alignment and structure
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* Back     alignment and structure
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Back     alignment and structure
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* Back     alignment and structure
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* Back     alignment and structure
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* Back     alignment and structure
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Back     alignment and structure
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A Back     alignment and structure
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Back     alignment and structure
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Back     alignment and structure
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Back     alignment and structure
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Back     alignment and structure
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Back     alignment and structure
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Back     alignment and structure
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* Back     alignment and structure
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ... Back     alignment and structure
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Back     alignment and structure
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} Back     alignment and structure
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1217
d2a5yb3277 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor 7e-47
d1ogqa_313 c.10.2.8 (A:) Polygalacturonase inhibiting protein 7e-04
d2astb2284 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 0.002
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  167 bits (424), Expect = 7e-47
 Identities = 36/279 (12%), Positives = 80/279 (28%), Gaps = 25/279 (8%)

Query: 66  VRRRPPTTCLTSEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQE 125
           + R+     +  +   Y R     R++  + +    D+     + L G  G GK+ +A +
Sbjct: 7   LDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLDS---FFLFLHGRAGSGKSVIASQ 63

Query: 126 VYND---KLTDDFKPKAWVCVSDDFDILRISKAILESITRSSCG--------LTDLNSVQ 174
             +     +  ++    W+  S               +   S              + V 
Sbjct: 64  ALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL 123

Query: 175 LKLKEAVFKKNKSYELWQ----ALKSPFMAGAPGSRIIVTTRSMDVALKMGSGKN-YELK 229
            ++         +           ++   A     R +VTTR ++++          E+ 
Sbjct: 124 KRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVT 183

Query: 230 HLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDE 289
            L  D+C+     +             E    + +    G P            K   ++
Sbjct: 184 SLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EK 239

Query: 290 WRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAY 328
              + N    +    + +  +   SY  L   L+RC   
Sbjct: 240 MAQLNNK--LESRGLVGVECITPYSYKSLAMALQRCVEV 276
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1217
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 100.0
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.72
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.7
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 99.64
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 99.63
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 99.62
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 99.56
d1p9ag_266 von Willebrand factor binding domain of glycoprote 99.53
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 99.5
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 99.49
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 99.49
d1p9ag_266 von Willebrand factor binding domain of glycoprote 99.49
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 99.48
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 99.33
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.32
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.31
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 99.29
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.28
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.27
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.26
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.25
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.22
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.18
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 99.03
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 98.97
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 98.83
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 98.8
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 98.78
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 98.77
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 98.74
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 98.62
d2ifga3156 High affinity nerve growth factor receptor, N-term 98.48
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 98.45
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 98.4
d2ifga3156 High affinity nerve growth factor receptor, N-term 98.36
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 98.24
d1z7xw1 460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 98.12
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 98.01
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 97.99
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 97.99
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 97.93
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 97.83
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 97.73
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 97.68
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 97.62
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 97.61
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 97.61
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 97.59
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 97.49
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 97.43
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 97.29
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 97.27
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 97.25
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 97.23
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 97.08
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 96.89
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 96.87
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 96.85
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 96.67
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 95.97
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 95.93
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 95.89
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 95.81
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 95.67
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 95.66
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 95.65
d2qy9a2211 GTPase domain of the signal recognition particle r 95.63
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 95.6
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 95.48
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 95.27
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 95.22
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 95.17
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 95.15
d1okkd2207 GTPase domain of the signal recognition particle r 95.15
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 95.07
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 94.96
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 94.93
d1vmaa2213 GTPase domain of the signal recognition particle r 94.91
d1ls1a2207 GTPase domain of the signal sequence recognition p 94.91
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 94.91
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 94.88
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 94.85
d1j8yf2211 GTPase domain of the signal sequence recognition p 94.85
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 94.79
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 94.77
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 94.7
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 94.62
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 94.53
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 94.52
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 94.51
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 94.12
d1cp2a_269 Nitrogenase iron protein {Clostridium pasteurianum 94.07
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 94.03
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 93.92
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 93.85
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 93.77
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 93.64
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 93.53
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 93.52
d1ihua2279 Arsenite-translocating ATPase ArsA {Escherichia co 93.5
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 93.45
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 93.35
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 93.26
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 93.1
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 93.05
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 92.76
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 92.72
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 92.68
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 92.68
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 92.67
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 92.66
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 92.52
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 92.48
d1ihua1296 Arsenite-translocating ATPase ArsA {Escherichia co 92.4
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 92.4
d1odfa_286 Hypothetical protein Ygr205W {Baker's yeast (Sacch 92.4
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 92.37
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 92.35
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 92.35
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 92.23
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 92.09
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 92.07
d2afhe1289 Nitrogenase iron protein {Azotobacter vinelandii [ 91.96
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 91.91
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 91.77
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 91.4
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 91.32
d1hyqa_232 Cell division regulator MinD {Archaeon Archaeoglob 91.29
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 91.09
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 90.97
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 90.42
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 90.38
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 90.37
d1svma_362 Papillomavirus large T antigen helicase domain {Si 90.0
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 89.75
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 89.71
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 89.64
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 89.57
d2ocpa1241 Deoxyguanosine kinase {Human (Homo sapiens) [TaxId 89.55
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 89.31
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 89.27
d1g3qa_237 Cell division regulator MinD {Archaeon Pyrococcus 89.21
d1a7ja_288 Phosphoribulokinase {Rhodobacter sphaeroides [TaxI 89.19
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 89.03
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 88.9
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 88.74
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 88.49
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 88.47
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 88.43
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 88.34
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 88.34
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 88.18
d2erxa1171 di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 88.15
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 88.0
d1g2912240 Maltose transport protein MalK, N-terminal domain 87.94
d2a5ja1173 Rab2b {Human (Homo sapiens) [TaxId: 9606]} 87.92
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 87.85
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 87.85
d1z0fa1166 Rab14 {Human (Homo sapiens) [TaxId: 9606]} 87.83
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 87.79
d1yzqa1164 Rab6 {Human (Homo sapiens) [TaxId: 9606]} 87.78
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 87.71
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 87.62
d1p5zb_241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 87.59
d2atva1168 Ras-like estrogen-regulated growth inhibitor, RERG 87.59
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 87.45
d1z0ja1167 Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} 87.43
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 87.41
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 87.38
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 87.32
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 87.19
d1z08a1167 Rab21 {Human (Homo sapiens) [TaxId: 9606]} 87.17
d1kaoa_167 Rap2a {Human (Homo sapiens) [TaxId: 9606]} 87.07
d2fn4a1173 r-Ras {Human (Homo sapiens) [TaxId: 9606]} 87.06
d2awna2232 Maltose transport protein MalK, N-terminal domain 87.03
d1r2qa_170 Rab5a {Human (Homo sapiens) [TaxId: 9606]} 87.0
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 86.9
d1c1ya_167 Rap1A {Human (Homo sapiens) [TaxId: 9606]} 86.89
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 86.85
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 86.77
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 86.72
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 86.64
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 86.59
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 86.57
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 86.57
d2gjsa1168 Rad {Human (Homo sapiens) [TaxId: 9606]} 86.56
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 86.52
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 86.26
d2ew1a1171 Rab30 {Human (Homo sapiens) [TaxId: 9606]} 86.23
d2erya1171 r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 86.17
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 86.15
d1ek0a_170 Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T 86.14
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 86.1
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 86.01
d1byia_224 Dethiobiotin synthetase {Escherichia coli [TaxId: 85.96
d2fh5b1207 Signal recognition particle receptor beta-subunit 85.81
d2bmea1174 Rab4a {Human (Homo sapiens) [TaxId: 9606]} 85.66
d2f7sa1186 Rab27b {Human (Homo sapiens) [TaxId: 9606]} 85.62
d1fzqa_176 ADP-ribosylation factor {Mouse (Mus musculus), ARL 85.44
d1kmqa_177 RhoA {Human (Homo sapiens) [TaxId: 9606]} 85.43
d1m7ba_179 RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} 85.38
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 85.28
d1vg8a_184 Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} 85.22
d1xtqa1167 GTP-binding protein RheB {Human (Homo sapiens) [Ta 85.21
d2g6ba1170 Rab26 {Human (Homo sapiens) [TaxId: 9606]} 85.09
d1u8za_168 Ras-related protein RalA {Cotton-top tamarin (Sagu 85.04
d2atxa1185 RhoQ {Human (Homo sapiens) [TaxId: 9606]} 85.0
d2f9la1175 Rab11b {Human (Homo sapiens) [TaxId: 9606]} 84.88
d1mh1a_183 Rac {Human (Homo sapiens) [TaxId: 9606]} 84.87
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 84.77
d1wf3a1178 GTPase Era, N-terminal domain {Thermus thermophilu 84.77
d1nija1222 Hypothetical protein YjiA, N-terminal domain {Esch 84.63
d2bcgy1194 GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi 84.43
d1udxa2180 Obg GTP-binding protein middle domain {Thermus the 84.43
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 84.41
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 84.39
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 84.29
d1nrjb_209 Signal recognition particle receptor beta-subunit 84.0
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 83.98
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 83.91
d1egaa1179 GTPase Era, N-terminal domain {Escherichia coli [T 83.87
d1kkma_176 HPr kinase HprK C-terminal domain {Lactobacillus c 83.84
d2jdid3276 Central domain of beta subunit of F1 ATP synthase 83.73
d2g3ya1172 GTP-binding protein GEM {Human (Homo sapiens) [Tax 83.67
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 83.57
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 83.55
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 83.54
d1x1ra1169 Ras-related protein M-Ras (XRas) {Mouse (Mus muscu 83.54
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 83.48
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 83.35
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 83.24
d1svsa1195 Transducin (alpha subunit) {Rat (Rattus norvegicus 83.17
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 83.16
d1wmsa_174 Rab9a {Human (Homo sapiens) [TaxId: 9606]} 83.14
d2ngra_191 CDC42 {Human (Homo sapiens) [TaxId: 9606]} 83.01
d1x3sa1177 Rab18 {Human (Homo sapiens) [TaxId: 9606]} 83.0
d1knxa2177 HPr kinase HprK C-terminal domain {Mycoplasma pneu 82.88
d1deka_241 Deoxynucleoside monophosphate kinase {Bacteriophag 82.88
d1zcba2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 82.43
d1lnza2185 Obg GTP-binding protein middle domain {Bacillus su 82.28
d1i2ma_170 Ran {Human (Homo sapiens) [TaxId: 9606]} 82.16
d2bmja1175 Centaurin gamma 1, G domain {Human (Homo sapiens) 82.08
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 81.96
d2hyda1255 Putative multidrug export ATP-binding/permease pro 81.82
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 81.77
d1ko7a2169 HPr kinase HprK C-terminal domain {Staphylococcus 81.67
d1h65a_257 Chloroplast protein translocon GTPase Toc34 {Garde 81.51
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 81.33
d1mkya2186 Probable GTPase Der, N-terminal and middle domains 81.07
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 80.4
d1xpua3289 Transcription termination factor Rho, ATPase domai 80.2
d1moza_182 ADP-ribosylation factor {Baker's yeast (Saccharomy 80.06
d1p6xa_333 Thymidine kinase {Equine herpesvirus type 4 [TaxId 80.01
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.6e-33  Score=299.57  Aligned_cols=240  Identities=13%  Similarity=0.123  Sum_probs=180.6

Q ss_pred             CCCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc---ccCCCCCeEEEEeCCcccHHH
Q 039990           75 LTSEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK---LTDDFKPKAWVCVSDDFDILR  151 (1217)
Q Consensus        75 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~~F~~~~wv~~~~~~~~~~  151 (1217)
                      .|..+.+|||+.++++|+++|.....   .+.++|+|+||||+||||||+++|++.   .+.+|++++||++++.++...
T Consensus        16 ~p~~~~~~gR~~~~~~i~~~L~~~~~---~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~   92 (277)
T d2a5yb3          16 VPKQMTCYIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST   92 (277)
T ss_dssp             CBCCCCSCCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred             CCCCCceeCcHHHHHHHHHHHHhccC---CCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHH
Confidence            34466789999999999999976432   456899999999999999999999863   567799999999999888777


Q ss_pred             HHHHHHHHhhc---CCC--CCCC-----hhHHHHHHHHHHHhc--------CcCHHHHHHhhcccCCCCCCcEEEEEcCc
Q 039990          152 ISKAILESITR---SSC--GLTD-----LNSVQLKLKEAVFKK--------NKSYELWQALKSPFMAGAPGSRIIVTTRS  213 (1217)
Q Consensus       152 ~~~~i~~~l~~---~~~--~~~~-----~~~~~~~l~~~l~~~--------~~~~~~~~~l~~~~~~~~~gs~ilvTtR~  213 (1217)
                      +...+...+..   ...  ....     .......+...+.++        +|+.+.|+.+.      ..|||||||||+
T Consensus        93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~------~~~srilvTTR~  166 (277)
T d2a5yb3          93 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ------ELRLRCLVTTRD  166 (277)
T ss_dssp             HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH------HTTCEEEEEESB
T ss_pred             HHHHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhc------ccCceEEEEeeh
Confidence            76665554432   211  0111     111222344444444        56667776543      258999999999


Q ss_pred             hHHHHhhCCC-ceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHhhcCCChhHHHH
Q 039990          214 MDVALKMGSG-KNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRA  292 (1217)
Q Consensus       214 ~~v~~~~~~~-~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~  292 (1217)
                      ..++..+... +.|+|++|+.+|||+||.++++...   ..+..++++++|+++|+|+||||+++|+.++.+ ..++|.+
T Consensus       167 ~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~---~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k-~~~~~~~  242 (277)
T d2a5yb3         167 VEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFEKMAQ  242 (277)
T ss_dssp             GGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHHHHHH
T ss_pred             HHHHHhcCCCCceEECCCCCHHHHHHHHHHHhCCcc---CchhhHHHHHHHHHHhCCCHHHHHHHHHHhccC-CHHHHHH
Confidence            9998776554 6899999999999999999987542   234567889999999999999999999999876 4678887


Q ss_pred             HHhhccCCCCCCCCchHHHHHhhcCCChhHHHHHHHh
Q 039990          293 ILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYC  329 (1217)
Q Consensus       293 ~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~  329 (1217)
                      +.+....  ....++..++.+||++||+++|.||.++
T Consensus       243 ~~~~L~~--~~~~~v~~il~~sY~~L~~~lk~c~~~l  277 (277)
T d2a5yb3         243 LNNKLES--RGLVGVECITPYSYKSLAMALQRCVEVL  277 (277)
T ss_dssp             HHHHHHH--HCSSTTCCCSSSSSSSHHHHHHHHHHTS
T ss_pred             HHHHHhc--CcHHHHHHHHHHHHhcccHHHHHHHHhC
Confidence            6654321  1223688899999999999999999763
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Back     information, alignment and structure
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Back     information, alignment and structure
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} Back     information, alignment and structure
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} Back     information, alignment and structure
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Back     information, alignment and structure
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} Back     information, alignment and structure