Citrus Sinensis ID: 039996

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MLKLMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDIGSGLQGVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIRGEDITEVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIERYMKLNSSA
Secondary Structure (PSIPRED)
ccccccEEEEccccccccHHHHHHHHHHHHHccccEEEccccccccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEccccccEEEEEccccccHHHHHHHHHHHHcccccccccEEEEEEccccEEEEEEEccccccccHHHHHHHHHHHHHHcccEEccEEEEcccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEcccccccccHHHHHHHHHHHHccccEEEEEcccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcccHccccccccccEEEEEcccccccccHHHHHHHHHHHccccccccccEEEEEccccEEEEEccccccHHHHHHHHHHHHHccccccHHHEEEEEEccccEEEEEEEccccccccHHHHHHHHHHHHHHcccEEccEEEccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MLKLMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFedvtynrvGYTVVSKlaptlssdscplkSTVFAMIKAAFEniepgmhsgshprlgvvdhicfhplasapldqVAGIAKSVVGDIGSGLQGVIVIgstrwvdnynipvfsTNIAAVRRIAKQVSERGGGLASVQAMVLIRGEDITEVEcnllkpskiggdkVQVEVDELAAVEGMAVgkgyytdlsQEEIIERYMKLNSSA
Flexible Loop (DISEMBL)
MLKLMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSklaptlssdscPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDIGSGLQGVIVIGstrwvdnyniPVFSTNIAAVRRIAKQVserggglasVQAMVLIRGEDITEVECNLlkpskiggdkvQVEVDELAAVegmavgkgyytdlsqeEIIERYMKLNSSA
Low Complexity Region (SEG)
MLKLMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDIGSGLQGVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIRGEDITEVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIERYMKLNSSA
Disordered region (IsUnstruct)
***LMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDIGSGLQGVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIRGEDITEVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIERY*******
Disordered Region (DISOPRED)
***LMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDIGSGLQGVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIRGEDITEVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIERYMKLN***
Disordered Region (DISEMBL)
MLKLMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDIGSGLQGVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIRGEDITEVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIERYMKLNSSA
Disordered Region (DISPRO)
*LKLMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDIGSGLQGVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIRGEDITEVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIERYMKLNS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKLMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDIGSGLQGVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIRGEDITEVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIERYMKLNSSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
225447254	455	PREDICTED: formimidoyltransferase-cyclod	0.987	0.523	0.565	6e-85
297739271	297	unnamed protein product [Vitis vinifera]	0.970	0.787	0.559	2e-82
224126753	300	predicted protein [Populus trichocarpa]	0.975	0.783	0.395	2e-49
242094470	339	hypothetical protein SORBIDRAFT_10g00140	0.975	0.693	0.402	3e-49
255553877	299	formiminotransferase-cyclodeaminase, put	0.539	0.434	0.723	1e-47
224127011	300	predicted protein [Populus trichocarpa]	0.979	0.786	0.393	3e-47
224126757	290	predicted protein [Populus trichocarpa]	0.522	0.434	0.738	8e-47
449444392	324	PREDICTED: formimidoyltransferase-cyclod	0.966	0.719	0.367	8e-46
326528459	316	predicted protein [Hordeum vulgare subsp	0.966	0.737	0.343	2e-43
168057089	308	predicted protein [Physcomitrella patens	0.962	0.753	0.362	1e-42

>gi|225447254|ref|XP_002272923.1| PREDICTED: formimidoyltransferase-cyclodeaminase-like [Vitis vinifera]

 Score =  319 bits (817), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 168/297 (56%), Positives = 196/297 (65%), Gaps = 59/297 (19%)

Query: 1   MLKLMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPT 60
           MLKLML CCKVYISES+N+AALE IE+AARLF  A I+NKFED TYNRVGYT+VSKLAP 
Sbjct: 155 MLKLMLACCKVYISESRNRAALELIERAARLFPEAPIINKFEDETYNRVGYTLVSKLAPK 214

Query: 61  LSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPL--------- 111
            SSD+C L+  V AM+KAAFE I   MH G+HPRLGVVDHICFHPLA A L         
Sbjct: 215 PSSDTCALRGAVLAMVKAAFEAINLEMHCGNHPRLGVVDHICFHPLADASLKQTAGIAKS 274

Query: 112 ------------------------------------------DQVAGIAKS----VVGDI 125
                                                     +Q AG  KS    +  D+
Sbjct: 275 LAADIGSNLQVPTFLYGAAHEEERTLDSIRRELGYFKPNSSGNQWAGGMKSESSLLKPDV 334

Query: 126 GSG----LQGVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIRG 181
           G       +GV+VIGSTRWVDNYN+P+FS+NIAAVRRIAK+VS RGGGL SVQAM L  G
Sbjct: 335 GPAQAAQAKGVVVIGSTRWVDNYNVPIFSSNIAAVRRIAKRVSGRGGGLPSVQAMALAYG 394

Query: 182 EDITEVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIERYMKLN 238
           E++TEV CNLL+PS+IGGD+VQ+EV+  A  EGM  GKGYYTD SQE+II+RY+  N
Sbjct: 395 ENVTEVACNLLEPSRIGGDQVQLEVERHAEEEGMIAGKGYYTDFSQEKIIKRYLDFN 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739271|emb|CBI28922.3| unnamed protein product [Vitis vinifera]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/293 (55%), Positives = 192/293 (65%), Gaps = 59/293 (20%)

Query: 5   MLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSD 64
           ML CCKVYISES+N+AALE IE+AARLF  A I+NKFED TYNRVGYT+VSKLAP  SSD
Sbjct: 1   MLACCKVYISESRNRAALELIERAARLFPEAPIINKFEDETYNRVGYTLVSKLAPKPSSD 60

Query: 65  SCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPL------------- 111
           +C L+  V AM+KAAFE I   MH G+HPRLGVVDHICFHPLA A L             
Sbjct: 61  TCALRGAVLAMVKAAFEAINLEMHCGNHPRLGVVDHICFHPLADASLKQTAGIAKSLAAD 120

Query: 112 --------------------------------------DQVAGIAKS----VVGDIGSG- 128
                                                 +Q AG  KS    +  D+G   
Sbjct: 121 IGSNLQVPTFLYGAAHEEERTLDSIRRELGYFKPNSSGNQWAGGMKSESSLLKPDVGPAQ 180

Query: 129 ---LQGVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIRGEDIT 185
               +GV+VIGSTRWVDNYN+P+FS+NIAAVRRIAK+VS RGGGL SVQAM L  GE++T
Sbjct: 181 AAQAKGVVVIGSTRWVDNYNVPIFSSNIAAVRRIAKRVSGRGGGLPSVQAMALAYGENVT 240

Query: 186 EVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIERYMKLN 238
           EV CNLL+PS+IGGD+VQ+EV+  A  EGM  GKGYYTD SQE+II+RY+  N
Sbjct: 241 EVACNLLEPSRIGGDQVQLEVERHAEEEGMIAGKGYYTDFSQEKIIKRYLDFN 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126753|ref|XP_002319918.1| predicted protein [Populus trichocarpa] gi|222858294|gb|EEE95841.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/298 (39%), Positives = 170/298 (57%), Gaps = 63/298 (21%)

Query: 5   MLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLA--PTLS 62
           ML CC ++ISE++N+AAL+ IE++AR+   ++IVNKFED  YNR+ +T+VS +    T S
Sbjct: 1   MLICCMLFISEARNRAALDLIERSARIDPESVIVNKFEDRVYNRIRFTIVSYVVVDSTGS 60

Query: 63  SDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVV 122
               PL  TV A+++AA+  I   +HSG+HPRLGVVD I FHPLA A LD+ A +AK+V 
Sbjct: 61  PIYSPLHQTVLAIVEAAYGAINLELHSGAHPRLGVVDDIAFHPLAEASLDEAAWLAKAVA 120

Query: 123 GDIGSGLQGVIVIGS-------------------------TRWVDNYNIP---------- 147
            DIGS  Q  + + +                         ++W   +NIP          
Sbjct: 121 ADIGSRFQVPVFLYAAAHPTGRAPDTIRRELGYYRPNFMGSQWA-GWNIPEILPENPDHG 179

Query: 148 -------------------------VFSTNIAAVRRIAKQVSERGGGLASVQAMVLIRGE 182
                                    +  T+++  RRIA+ VS RGGGL +VQ++ L  G+
Sbjct: 180 PNHVSRTRGVTLIGARSWVTLYNIPIMCTDVSTARRIARMVSARGGGLPTVQSLALFHGD 239

Query: 183 DITEVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIERYMKLNSS 240
           D  E+ C LL+P++IG D+VQ +V+ LAA EG+ V KGY+TDLS E I+++YM L S+
Sbjct: 240 DSAEIACMLLEPNRIGPDRVQAQVEMLAAQEGLDVEKGYFTDLSPEMIVQKYMNLISA 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242094470|ref|XP_002437725.1| hypothetical protein SORBIDRAFT_10g001400 [Sorghum bicolor] gi|241915948|gb|EER89092.1| hypothetical protein SORBIDRAFT_10g001400 [Sorghum bicolor]

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/296 (40%), Positives = 157/296 (53%), Gaps = 61/296 (20%)

Query: 1   MLKLMLTCCKVYISESQNKAALESIEQAARLFSAAII-VNKFEDVTYNRVGYTVVSKLAP 59
           M++  L CCK+YISE++N  AL +IE AA     A   VN F D  YNRVGYT+VS LA 
Sbjct: 32  MVRPALACCKLYISEARNAGALRAIEHAAAALRPAAALVNAFADDAYNRVGYTLVSPLAG 91

Query: 60  TLSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAK 119
             + ++ PL    F ++ AA E ++ G H+G+HPRLGVVDH+ FHPLA A L+ VA + +
Sbjct: 92  DGTGEAPPLHRAAFRVVAAALEAVDLGAHAGAHPRLGVVDHVAFHPLAGARLEDVAALTR 151

Query: 120 SVVGDIGSGLQGVIVI---------------------------GSTRWVDNYNIP----- 147
           +V  DIG  LQ V                              G  +W    + P     
Sbjct: 152 AVAADIGENLQAVSTYLYGAAHKDGRTLASIRRQLGYFTPTSPGGDQWCGAPDAPLPVAP 211

Query: 148 ----------------------------VFSTNIAAVRRIAKQVSERGGGLASVQAMVLI 179
                                       V + ++ A RRIA+ VSERGGGLASVQAM L 
Sbjct: 212 DAGPVTPSRSKGVVVVGATAWVDNYNVPVRTADVGAARRIARAVSERGGGLASVQAMGLA 271

Query: 180 RGEDITEVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIERYM 235
            G+   EV CNLL P+ +G D+VQ  V  LAA  G+ VG+GY+TDLSQE+++E Y+
Sbjct: 272 HGDGAAEVACNLLDPAAVGADQVQERVRRLAAAMGIGVGEGYFTDLSQEKVVELYL 327

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553877|ref|XP_002517979.1| formiminotransferase-cyclodeaminase, putative [Ricinus communis] gi|223542961|gb|EEF44497.1| formiminotransferase-cyclodeaminase, putative [Ricinus communis]

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/130 (72%), Positives = 106/130 (81%)

Query: 1   MLKLMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPT 60
           MLK  L CCKVYISE++NKAAL SIE+AA+LF  A I+N+FED TYNRVGYT+VS LAP 
Sbjct: 1   MLKWTLACCKVYISETRNKAALASIEKAAKLFPQAPIINRFEDATYNRVGYTLVSSLAPK 60

Query: 61  LSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKS 120
            SS SC L+S V AM+KAAFE I+   HSGSHPRLGVVDHICFHPLA A LDQVA IAKS
Sbjct: 61  PSSGSCSLRSAVLAMVKAAFEAIDFEQHSGSHPRLGVVDHICFHPLARASLDQVAEIAKS 120

Query: 121 VVGDIGSGLQ 130
           +  D+GSGLQ
Sbjct: 121 LAVDVGSGLQ 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127011|ref|XP_002329361.1| predicted protein [Populus trichocarpa] gi|222870411|gb|EEF07542.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 162/297 (54%), Gaps = 61/297 (20%)

Query: 5   MLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLA--PTLS 62
           ML  C +YISE++N+A L+ IE+AARL   ++IVNKFED  YNR+ +T+VS +    T S
Sbjct: 1   MLVSCMLYISEARNRAVLDLIERAARLDPESVIVNKFEDRVYNRIRFTIVSYVVVDSTGS 60

Query: 63  SDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVV 122
               PL  TV AM++AA+  I   +HSG+HPRLGVVD I FHPLA A LD+ A +AK+V 
Sbjct: 61  PIYSPLHQTVLAMVEAAYGAINLELHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKTVA 120

Query: 123 GDIGSGLQGVIVI-----------GSTRWVDNYNIPVF---------------------S 150
            DIGS  Q  + +            + R    Y  P F                      
Sbjct: 121 ADIGSRFQVPVFLYAAAHPTGRAPDTIRRELGYYTPNFMGNQWAGWTIPEILPGAPDEGP 180

Query: 151 TNIAAVRRI-----------------------AKQVSE----RGGGLASVQAMVLIRGED 183
           T+++  R I                       A+Q++     R GGL +VQA+ L+ G+D
Sbjct: 181 THVSRTRGIVMIGARPWVALYNIPVVCTDVSTARQIARMVRARDGGLPTVQALALVHGDD 240

Query: 184 ITEVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIERYMKLNSS 240
             E+ C LL+P+++G ++VQ EV+ LAA EG+ V KGY+TD   E I+E+YM L SS
Sbjct: 241 SFEIACILLEPNQVGAERVQAEVEMLAAQEGLEVEKGYFTDFPPEMIVEKYMNLISS 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126757|ref|XP_002319919.1| predicted protein [Populus trichocarpa] gi|222858295|gb|EEE95842.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (489), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 102/126 (80%)

Query: 5   MLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSD 64
           ML CCKVYISES+NK ALESIE+AA+LF  A IVNKFEDVTYNRVGYT+VS LAP  S D
Sbjct: 1   MLACCKVYISESRNKVALESIERAAKLFPEAPIVNKFEDVTYNRVGYTLVSSLAPKPSLD 60

Query: 65  SCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGD 124
           SC LK  V AM+KAA E I+ G+H GSHPRLGVVDHICFHPLA + LDQ AGIAKS+  D
Sbjct: 61  SCALKGVVLAMVKAALETIDFGLHCGSHPRLGVVDHICFHPLAQSSLDQAAGIAKSLAVD 120

Query: 125 IGSGLQ 130
            GS LQ
Sbjct: 121 AGSSLQ 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444392|ref|XP_004139959.1| PREDICTED: formimidoyltransferase-cyclodeaminase-like [Cucumis sativus] gi|449475735|ref|XP_004154537.1| PREDICTED: formimidoyltransferase-cyclodeaminase-like [Cucumis sativus]

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 157/294 (53%), Gaps = 61/294 (20%)

Query: 5   MLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSD 64
           +L CCK Y+SES+N++ LE+IE AAR    ++IVNKFED  YNR  YT+VS +    + +
Sbjct: 18  VLLCCKYYVSESRNRSVLEAIEGAAREDPDSVIVNKFEDGAYNRTRYTIVSYVVHDTTGN 77

Query: 65  S--CPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICF------------------- 103
           +   PL  TV +M + AF +I    HSG+HPRLGVVD I F                   
Sbjct: 78  AIYSPLLQTVLSMTQVAFSHINLESHSGTHPRLGVVDDIVFHPLARASLHEAAWLAKAVA 137

Query: 104 -----------------HPLASAPLD---QVAGIAKSVVGDIGSGL-------------- 129
                            HP   AP D   ++     +  G+  +G               
Sbjct: 138 KDIAAMFQVPVFLYSAAHPSGKAPDDLRRELGYFRPNYKGNQWAGWSMPETLPENPDEGP 197

Query: 130 ------QGVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIRGED 183
                 +G+ +IG+  W   YNIP+ ST+++A RRIA+ VS RGGGL +VQ + L+  ++
Sbjct: 198 NTVSRERGITMIGARPWTAMYNIPILSTDVSATRRIARMVSGRGGGLPTVQTIGLLHDDE 257

Query: 184 ITEVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIERYMKL 237
            TE+ C LL+P+++G D+VQ  V+ +AA  G+ V  GY+TD S E I+E+Y+ L
Sbjct: 258 TTEIACVLLEPNQVGADRVQRHVEIVAAQFGLEVENGYFTDYSPEMIVEKYLNL 311

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326528459|dbj|BAJ93375.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 160/297 (53%), Gaps = 64/297 (21%)

Query: 8   CCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSC- 66
           CCK+YISES+N A +++I +  +     ++++KF+D  YNRV YT+VS +    S+    
Sbjct: 20  CCKLYISESRNAAIVDAISRIGQKNPEVVLLSKFDDKYYNRVRYTLVSYITSESSAGEAV 79

Query: 67  --PLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPL------------------ 106
             P++  +  MI+AAF  I    HSG+HPR+GVVD I FHPL                  
Sbjct: 80  FGPIRKVLLEMIEAAFSAINLQAHSGTHPRIGVVDDISFHPLSPAATMEDAAQLAKLVAS 139

Query: 107 --------------ASAPLDQVAGIAKSVVG------------------------DIG-- 126
                         A+ P  +    A+  +G                        D+G  
Sbjct: 140 DIGNGLQVPVFLYAAAHPTSKSVSAARRELGYYRPNHKGVQWAGQVLPHTLPVKPDVGPA 199

Query: 127 --SGLQGVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIRGEDI 184
             S  +G  ++G+T +VDNYN+P+F  ++  VRRI ++V+ R GGL +VQA+ L  G++ 
Sbjct: 200 HVSRERGATMVGATPFVDNYNVPIFCKDVPTVRRITRRVTGRSGGLPTVQALALFHGDNC 259

Query: 185 TEVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIERYMKLNSSA 241
           TE+ C LL P  +G D+VQ  V+++A  +G+ V KGY+TDLS++ ++ERY ++ S+A
Sbjct: 260 TEIAC-LLDPDHVGADQVQWLVEQIAEEQGLEVDKGYFTDLSKDMMLERYFEMISAA 315

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168057089|ref|XP_001780549.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668027|gb|EDQ54643.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/290 (36%), Positives = 146/290 (50%), Gaps = 58/290 (20%)

Query: 1   MLKLMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPT 60
           + +L L CCK+YIS+++N AAL+ IE   R    A +++ FED  YNRVGYT+   +  +
Sbjct: 6   LRRLHLACCKIYISDTRNAAALQEIESTFRAHPEAPLLHVFEDHEYNRVGYTLAGSVCSS 65

Query: 61  LSSDS-CPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAK 119
            S ++  PL+S V  +++ A   I+   HSGSHPRLGVVDHIC HPL +A +     IA+
Sbjct: 66  ESRNARTPLQSAVTDVVRTALRTIDLRQHSGSHPRLGVVDHICTHPLGTATMTDTTAIAE 125

Query: 120 SVVGDIGSGLQ------------------------------GVIVIGST----------- 138
            +  +IG  L+                              G + IGS            
Sbjct: 126 GIASEIGQELKVPAFLYGAAHRNGRPLDDIRRALGYFQPSNGGLWIGSNIFPATMQPDFG 185

Query: 139 ----------------RWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIRGE 182
                            WV NYN+P+ + ++   +RIA++VSERGGGLA VQAM L+ G 
Sbjct: 186 PRVAPPSSGIVVVGACPWVMNYNVPLTTIDLDKGKRIARKVSERGGGLAKVQAMALLHGT 245

Query: 183 DITEVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIE 232
           D  E+ CNLL         VQ  V  LAA EG+    GY T  S+E+I+ 
Sbjct: 246 DCIEIACNLLDTDVSNPQAVQHLVAALAAKEGVQASNGYLTGHSKEDILR 295

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2051415	431	AT2G20830 [Arabidopsis thalian	0.526	0.294	0.592	1.1e-70
UNIPROTKB|E1BL83	328	LOC613365 "Uncharacterized pro	0.510	0.375	0.291	1.8e-10
UNIPROTKB|F1SI74	328	F1SI74 "Uncharacterized protei	0.481	0.353	0.307	6.4e-09
ZFIN|ZDB-GENE-060929-820	328	zgc:153901 "zgc:153901" [Danio	0.385	0.283	0.271	1.5e-07
TIGR_CMR|CHY_0695	305	CHY_0695 "glutamate formiminot	0.414	0.327	0.268	4.1e-07
UNIPROTKB|H3BRX2	114	hCG_1653746 "HCG1653746, isofo	0.419	0.885	0.313	1.6e-05
RGD|70915	541	Ftcd "formiminotransferase cyc	0.427	0.190	0.265	0.00033
UNIPROTKB|I3LDH7	541	FTCD "Glutamate formimidoyltra	0.427	0.190	0.238	0.00046
UNIPROTKB|P53603	541	FTCD "Formimidoyltransferase-c	0.427	0.190	0.238	0.00046
ZFIN|ZDB-GENE-030131-9643	550	ftcd "formiminotransferase cyc	0.398	0.174	0.273	0.00086

TAIR|locus:2051415 AT2G20830 [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
 Identities = 77/130 (59%), Positives = 95/130 (73%)

Query:     1 MLKLMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPT 60
             ML+ ML CCKVYISE++NK ALE+IE+A + F  A IVNKFED  Y RVGYTVVS LA  
Sbjct:   135 MLREMLGCCKVYISEARNKTALEAIERALKPFPPAAIVNKFEDAAYGRVGYTVVSSLA-- 192

Query:    61 LSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKS 120
              +  S  LK+ VFAM+K A + I   +H GSHPRLGVVDHICFHPL+   ++QV+ +A S
Sbjct:   193 -NGSSSSLKNAVFAMVKTALDTINLELHCGSHPRLGVVDHICFHPLSQTSIEQVSSVANS 251

Query:   121 VVGDIGSGLQ 130
             +  DIGS L+
Sbjct:   252 LAMDIGSILR 261

GO:0005542 "folic acid binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|E1BL83 LOC613365 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 135 (52.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
 Identities = 40/137 (29%), Positives = 69/137 (50%)

Query:     4 LMLTCCKVYISESQNKAALESIEQAARL------FSAAIIVNKFEDVTYNRVGYTVVSKL 57
             L L  C + ISE++ K+ +E+I +AA L           ++N F D  YNR   T+ + +
Sbjct:     8 LHLAACLLNISEARKKSIVENIAKAALLERNGQRHPEVSVLNVFSDPEYNRSVITIAASI 67

Query:    58 APTLSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGI 117
                   D   L ++V A    AF++I+  +  G HP LG VD I  +PL+   +++   +
Sbjct:    68 ------DE--LGNSVLAACLEAFQSIDMEVQEGIHPCLGAVDLIPIYPLSGVGVEECGAV 119

Query:   118 AKSVVGDIGSGLQGVIV 134
             A+S+  ++   + G  V
Sbjct:   120 ARSLAENLVLSVPGCSV 136

GO:0016740 "transferase activity" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

UNIPROTKB|F1SI74 F1SI74 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 130 (50.8 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
 Identities = 40/130 (30%), Positives = 63/130 (48%)

Query:     2 LKLMLTCCKVYISESQNKAALESIEQAARL------FSAAIIVNKFEDVTYNRVGYTVVS 55
             L L L  C + ISE++ K  +E++ +AA L           ++N F D  YNR   T+  
Sbjct:     6 LGLRLAACLLNISEARRKYIVENVAKAALLERNGQKHPNVSVLNIFSDHEYNRSVITIAG 65

Query:    56 KLAPTLSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVA 115
                   S D   L  +V A    AF +I+  +  G HP LG VD I F+PL    +++  
Sbjct:    66 ------SVDE--LGDSVLAACLEAFRSIDMEVQDGIHPCLGAVDLIPFYPLCGVGVEECG 117

Query:   116 GIAKSVVGDI 125
              +A+S+  ++
Sbjct:   118 AVARSLAENL 127

GO:0016740 "transferase activity" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

ZFIN|ZDB-GENE-060929-820 zgc:153901 "zgc:153901" [Danio rerio (taxid:7955)]

 Score = 98 (39.6 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 29/107 (27%), Positives = 50/107 (46%)

Query:     6 LTCCKVYISESQNKAALESIEQAA------RLFSAAIIVNKFEDVTYNRVGYTVVSKLAP 59
             L  C + ISE++ K  +E++ ++A             ++N F D  YNR   TVV+ +  
Sbjct:    10 LVACLLNISEARRKDLVETVARSAITDIKGEKREGVTVLNIFNDSDYNRSVITVVANIEL 69

Query:    60 TLSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPL 106
                     ++  V +  + A   I+  +H G HP +G VD +  +PL
Sbjct:    70 --------IREAVLSACECACSLIDMSVHEGIHPCMGAVDLVPLYPL 108

GO:0016740 "transferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

TIGR_CMR|CHY_0695 CHY_0695 "glutamate formiminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 108 (43.1 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
 Identities = 29/108 (26%), Positives = 48/108 (44%)

Query:    14 SESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPLKSTVF 73
             SE + K  +E+I    R      ++  F D  +NR    ++ K  P       PLK  + 
Sbjct:    12 SEGRRKEVVEAIVDQVRNVPGVKLIGYFPDADFNRTVVELIGK--PE------PLKEALI 63

Query:    74 AMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSV 121
              M   A E I+     G+HPR+G  D I   P+ +  L++   +A+ +
Sbjct:    64 NMAAKAIELIDMEQQRGNHPRIGAQDTIPIFPMRNITLEECIQLAEEI 111

GO:0030409 "glutamate formimidoyltransferase activity" evidence=ISS

GO:0030412 "formimidoyltetrahydrofolate cyclodeaminase activity" evidence=ISS

UNIPROTKB|H3BRX2 hCG_1653746 "HCG1653746, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 105 (42.0 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 36/115 (31%), Positives = 54/115 (46%)

Query:     4 LMLTCCKVYISESQNKAALESIEQAARL------FSAAIIVNKFEDVTYNRVGYTVVSKL 57
             L L  C + +SE+  K  +E+I +AA L           ++N F D  Y R   T+ +  
Sbjct:     8 LRLAACLLNVSEAGRKYIVENIAKAALLDKNGKKHPQVSVLNIFSDQDYKRSVITIAT-- 65

Query:    58 APTLSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLD 112
                 S D   L S+V A    AF+ I+  +  G HP LG VD I  +PL+   ++
Sbjct:    66 ----SVDK--LGSSVLAACLEAFQAIDMEVQEGIHPCLGAVDLIPIYPLSGVTVE 114

GO:0005542 "folic acid binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

RGD|70915 Ftcd "formiminotransferase cyclodeaminase" [Rattus norvegicus (taxid:10116)]

 Score = 101 (40.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
 Identities = 30/113 (26%), Positives = 53/113 (46%)

Query:     9 CKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPL 68
             C    SE  N+  +++I QA       ++++     + NR  YT V +  P      C +
Sbjct:     7 CVPNFSEGNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQ--P-----ECVV 59

Query:    69 KSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHIC-FHPLASAPLDQVAGIAKS 120
             +  + A  + A + I+   H G HPR+G +D +C F P+    +D+    AK+
Sbjct:    60 EGALSAA-RTASQLIDMRKHKGEHPRMGALD-VCPFIPVRGVSMDECVLCAKA 110

GO:0005542 "folic acid binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005814 "centriole" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IMP

GO:0019215 "intermediate filament binding" evidence=TAS

GO:0019556 "histidine catabolic process to glutamate and formamide" evidence=IEA

GO:0019557 "histidine catabolic process to glutamate and formate" evidence=IEA

GO:0030409 "glutamate formimidoyltransferase activity" evidence=TAS

GO:0030412 "formimidoyltetrahydrofolate cyclodeaminase activity" evidence=ISO;TAS

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

UNIPROTKB|I3LDH7 FTCD "Glutamate formimidoyltransferase" [Sus scrofa (taxid:9823)]

 Score = 98 (39.6 bits), Expect = 0.00046, Sum P(2) = 0.00046
 Identities = 27/113 (23%), Positives = 53/113 (46%)

Query:     9 CKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPL 68
             C    SE +N+  +++I +A       ++++     + NR  YT V +    +      L
Sbjct:     7 CVPNFSEGKNQEVIDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFVGRPEDVVEG---AL 63

Query:    69 KSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHIC-FHPLASAPLDQVAGIAKS 120
              +      +AA++ I+   H G HPR+G +D +C F P+    +D+    A++
Sbjct:    64 NAA-----RAAYQLIDMSRHHGEHPRMGALD-VCPFIPVRGVTMDECVRCAQA 110

GO:0030412 "formimidoyltetrahydrofolate cyclodeaminase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

UNIPROTKB|P53603 FTCD "Formimidoyltransferase-cyclodeaminase" [Sus scrofa (taxid:9823)]

 Score = 98 (39.6 bits), Expect = 0.00046, Sum P(2) = 0.00046
 Identities = 27/113 (23%), Positives = 53/113 (46%)

Query:     9 CKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPL 68
             C    SE +N+  +++I +A       ++++     + NR  YT V +    +      L
Sbjct:     7 CVPNFSEGKNQEVIDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFVGRPEDVVEG---AL 63

Query:    69 KSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHIC-FHPLASAPLDQVAGIAKS 120
              +      +AA++ I+   H G HPR+G +D +C F P+    +D+    A++
Sbjct:    64 NAA-----RAAYQLIDMSRHHGEHPRMGALD-VCPFIPVRGVTMDECVRCAQA 110

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0019557 "histidine catabolic process to glutamate and formate" evidence=IEA

GO:0019556 "histidine catabolic process to glutamate and formamide" evidence=IEA

GO:0005814 "centriole" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0030412 "formimidoyltetrahydrofolate cyclodeaminase activity" evidence=IEA

GO:0030409 "glutamate formimidoyltransferase activity" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

ZFIN|ZDB-GENE-030131-9643 ftcd "formiminotransferase cyclodeaminase" [Danio rerio (taxid:7955)]

 Score = 94 (38.1 bits), Expect = 0.00086, Sum P(2) = 0.00086
 Identities = 29/106 (27%), Positives = 50/106 (47%)

Query:     9 CKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPL 68
             C    SE +NK  +++I  A        +++     + NR  YT V   +PT   +   L
Sbjct:    17 CVPNFSEGRNKEVIDAIANAISATEGCSLLDVDPGSSTNRTVYTFVG--SPTTVIEGA-L 73

Query:    69 KSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHIC-FHPLASAPLDQ 113
              +      + AF+ I+   HSG HPR G +D +C F P+ +  +++
Sbjct:    74 NAA-----RVAFKLIDMTKHSGEHPRTGAMD-VCPFIPVQNVTMEE 113

GO:0016740 "transferase activity" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
pfam07837	178	pfam07837, FTCD_N, Formiminotransferase domain, N-	2e-35
COG3643	302	COG3643, COG3643, Glutamate formiminotransferase [	8e-14
TIGR02024	298	TIGR02024, FtcD, glutamate formiminotransferase	2e-12

>gnl|CDD|191867 pfam07837, FTCD_N, Formiminotransferase domain, N-terminal subdomain

 Score =  123 bits (311), Expect = 2e-35
 Identities = 43/164 (26%), Positives = 66/164 (40%), Gaps = 33/164 (20%)

Query: 5   MLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSD 64
            L  C    SE +NK  +E+I  A R      +++   D  +NR   T V +        
Sbjct: 1   KLVECVPNFSEGRNKEVIEAIVDAIRAVPGVKLLDYSSDADHNRSVVTFVGEPEA----- 55

Query: 65  SCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGD 124
              +K      IK A E I+   H G HPR+G VD I F PL +  +++   +AK +   
Sbjct: 56  ---VKEAALEAIKKAAELIDMRKHKGEHPRMGAVDVIPFIPLKNVTMEECVELAKELGKR 112

Query: 125 IGSGLQGVIVIGSTRWVDNYNIPVF----------STNIAAVRR 158
           IG               +   +PV+            N+AA+R+
Sbjct: 113 IG---------------EELGVPVYLYEEAATRPERRNLAAIRK 141

The formiminotransferase (FT) domain of formiminotransferase- cyclodeaminase (FTCD) forms a homodimer, and each protomer comprises two subdomains. The N-terminal subdomain is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains. Length = 178

>gnl|CDD|226169 COG3643, COG3643, Glutamate formiminotransferase [Amino acid transport and metabolism]

 Score = 69.0 bits (169), Expect = 8e-14
 Identities = 57/243 (23%), Positives = 97/243 (39%), Gaps = 62/243 (25%)

Query: 1   MLKLMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPT 60
           M+K++   C    SE ++   +E I  AA+      I++   D  +NR   +V+     T
Sbjct: 1   MMKIVE--CVPNFSEGRDLEKIEKIVAAAKSIPTVKILDVEMDANHNR---SVI-----T 50

Query: 61  LSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKS 120
           L  D   + +  FA+IK A E I+   H G HPR+G  D I F PL     ++   I+K 
Sbjct: 51  LVGDPSKVVNAAFALIKKAAELIDMRNHKGEHPRMGAADVIPFVPLKDTTTEECVEISKE 110

Query: 121 VVGDIGSGLQ-------------------------------------------------- 130
           +   +G  L                                                   
Sbjct: 111 LGKRVGEELGIPVYLYEDAATRPERQNLADIRKGQYEGLKEKIKEPKWAPDFGPREVHPT 170

Query: 131 -GVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAM-VLIRGEDITEVE 188
            GV  IG+   +  +N+ + ++N+   ++IAK +    GGL  V+A+ V ++ + I +V 
Sbjct: 171 AGVTAIGARMPLIAFNVNLDTSNMEIGKKIAKAIRFSSGGLRFVKAIAVELKDKGIVQVS 230

Query: 189 CNL 191
            N+
Sbjct: 231 MNM 233

Length = 302

>gnl|CDD|131079 TIGR02024, FtcD, glutamate formiminotransferase

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 62/244 (25%)

Query: 1   MLKLMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPT 60
           M+KL+   C    SE +NK  +E I  A        +++   D  +NR   T V      
Sbjct: 1   MMKLVE--CVPNFSEGRNKEVIEKIVDAIIKTDNVKLLDVDMDPDHNRSVITFVG----- 53

Query: 61  LSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKS 120
              +   + +    + K A E I+   H G HPR+G  D I F P+ +  +++   +AK 
Sbjct: 54  ---EPECVVNAALKLAKKAAELIDMRNHKGEHPRMGAADVIPFIPVRNVTMEECVELAKE 110

Query: 121 VVGDIGSGL--------------------------------------------------- 129
               +G  L                                                   
Sbjct: 111 FGKRLGEELGVPVYLYEEAATRPERQTLAAIRKGQYEALFEKIKDPKWKPDFGPSEFNPK 170

Query: 130 QGVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVL-IRGEDITEVE 188
            G    G+ +++  +N+ + ++N+   ++IAK +  +GGGL  V+A+ L +  +++ +V 
Sbjct: 171 AGATATGARKFLIAFNVNLGTSNLEIAKKIAKAIRFQGGGLRFVKAIGLYLEEKNLVQVS 230

Query: 189 CNLL 192
            NL 
Sbjct: 231 MNLT 234

This model represents the tetrahydrofolate (THF) dependent glutamate formiminotransferase involved in the histidine utilization pathway. This enzyme interconverts L-glutamate and N-formimino-L-glutamate. The enzyme is bifunctional as it also catalyzes the cyclodeaminase reaction on N-formimino-THF, converting it to 5,10-methenyl-THF and releasing ammonia - part of the process of regenerating THF. This model covers enzymes from metazoa as well as gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype. The crystal structure of the enzyme has been studied in the context of the catalytic mechanism [Energy metabolism, Amino acids and amines]. Length = 298

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
TIGR02024	298	FtcD glutamate formiminotransferase. This model co	100.0
COG3643	302	Glutamate formiminotransferase [Amino acid transpo	100.0
PF07837	178	FTCD_N: Formiminotransferase domain, N-terminal su	100.0
PF02971	145	FTCD: Formiminotransferase domain; InterPro: IPR01	100.0
PRK13365	279	protocatechuate 4,5-dioxygenase subunit beta; Prov	90.95

>TIGR02024 FtcD glutamate formiminotransferase

Probab=100.00  E-value=3.6e-96  Score=670.31  Aligned_cols=226  Identities=25%  Similarity=0.337  Sum_probs=221.4

Q ss_pred             cceeeEecccccCCCHHHHHHHHHHHhhCCCcEEEecCCCCCCCcceEEEeecCCCCCCCCcccHHHHHHHHHHHHHHcC
Q 039996            4 LMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPLKSTVFAMIKAAFENI   83 (241)
Q Consensus         4 ~~lveCvpN~SEGR~~~~ie~I~~a~~~~~gv~lld~~~D~dyNRsv~T~vg~~~~~~~~~~~~v~~aa~~~~~~A~~~I   83 (241)
                      +||+|||||||||||+++||+|++++++++|++|||+|+|+|||||||||+|+|+        +|.+|+|+|+++|+++|
T Consensus         2 ~klveCvpnfSEGR~~~vie~I~~a~~~~~gv~lld~~~D~d~NRsv~Tlvg~pe--------~v~eaa~~~~~~A~elI   73 (298)
T TIGR02024         2 MKLVECVPNFSEGRNKEVIEKIVDAIIKTDNVKLLDVDMDPDHNRSVITFVGEPE--------CVVNAALKLAKKAAELI   73 (298)
T ss_pred             ceeEEEeeeeccCCCHHHHHHHHHHHhcCCCcEEEeCCCCCCCCceEEEEecChH--------HHHHHHHHHHHHHHHhc
Confidence            3599999999999999999999999999999999999999999999999999999        99999999999999999


Q ss_pred             CCCCCccCCCCCccccceeeeeCCCCCHHHHHHHHHHHHHhhccCCC---------------------------------
Q 039996           84 EPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDIGSGLQ---------------------------------  130 (241)
Q Consensus        84 Dm~~H~G~HPR~GavDvipf~Pl~~~t~~ec~~lA~~~a~~ig~~l~---------------------------------  130 (241)
                      ||++|+|+|||||||||||||||+++|||||+++|+.+|++||++|+                                 
T Consensus        74 Dm~~H~G~HPR~GAvDvipf~Pl~~~t~eec~~lA~~vg~~i~~~l~VPVyLY~~aA~~p~r~~La~IRrGq~eg~~e~~  153 (298)
T TIGR02024        74 DMRNHKGEHPRMGAADVIPFIPVRNVTMEECVELAKEFGKRLGEELGVPVYLYEEAATRPERQTLAAIRKGQYEALFEKI  153 (298)
T ss_pred             CcccccCCCCCCCccceeeeeeCCCCCHHHHHHHHHHHHHHHHHhhCCCEEEehhhccCCCCCCHHHHhhhhhccchhhc
Confidence            99999999999999999999999999999999999999999999987                                 


Q ss_pred             ------------------CeEEeccCCCeeeeeeeccCCCHHHHHHHHHHhhccCCCcccceEEeeEec-CCeEEEEeec
Q 039996          131 ------------------GVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIRG-EDITEVECNL  191 (241)
Q Consensus       131 ------------------Gat~vGAr~~liayNV~L~t~dl~~Ar~IA~~vR~~~GGL~~VqAmgl~~~-~g~~qVs~NL  191 (241)
                                        |+|+||||+||+||||||+|+|+++||+|||+||+|||||++||||||+|+ +|++||||||
T Consensus       154 ~~~~~~PD~Gp~~~~p~~Gat~vGAr~~liayNV~L~t~d~~~a~~IAk~vR~~gGGL~~VqAmgl~~~~~~~vqVsmNl  233 (298)
T TIGR02024       154 KDPKWKPDFGPSEFNPKAGATATGARKFLIAFNVNLGTSNLEIAKKIAKAIRFQGGGLRFVKAIGLYLEEKNLVQVSMNL  233 (298)
T ss_pred             cCCCCCCCCCCCCCCCCCCeEEEecCCceEEEEEeecCCCHHHHHHHHHHhhhcCCCccceEEeeEeecCCCeEEEEeec
Confidence                              999999999999999999999999999999999999999999999999996 7999999999


Q ss_pred             CCCCCCchHHHHHHHHHHHHhcCCeecceeeecCCHHHHH----HHHHHH
Q 039996          192 LKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEII----ERYMKL  237 (241)
Q Consensus       192 ~d~~~t~~~~V~e~V~~~A~~~Gv~V~g~y~~g~~pe~il----e~~~~~  237 (241)
                      +||++||+|+|||+|+++|++||++|.|||++||+|++++    ++|+++
T Consensus       234 ~d~~~t~~~~v~e~v~~~A~~~Gv~V~gse~vGl~P~~al~~~~~~yl~~  283 (298)
T TIGR02024       234 TNYEKTPLYRVFELIKMEAQRYGVPVVGSELVGLVPLKALLDVAAYYLRL  283 (298)
T ss_pred             cCCccCCHHHHHHHHHHHHHHhCCCccccEEecCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999    888763

This model covers enzymes from metazoa as well as gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype. The crystal structure of the enzyme has been studied in the context of the catalytic mechanism.

>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.6e-86  Score=591.96  Aligned_cols=221  Identities=27%  Similarity=0.340  Sum_probs=217.0

Q ss_pred             cceeeEecccccCCCHHHHHHHHHHHhhCCCcEEEecCCCCCCCcceEEEeecCCCCCCCCcccHHHHHHHHHHHHHHcC
Q 039996            4 LMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPLKSTVFAMIKAAFENI   83 (241)
Q Consensus         4 ~~lveCvpN~SEGR~~~~ie~I~~a~~~~~gv~lld~~~D~dyNRsv~T~vg~~~~~~~~~~~~v~~aa~~~~~~A~~~I   83 (241)
                      ++|+||+||||||||+++||+|++++++.|+++|||+.+|++||||||||+|+|+        .+.+|+|++++.|.++|
T Consensus         2 ~kivecvpNfSEG~~~~~ie~i~a~~~~~~~v~ildve~danhNRsViT~vgdp~--------~~~~A~f~~ik~AaelI   73 (302)
T COG3643           2 MKIVECVPNFSEGRDLEKIEKIVAAAKSIPTVKILDVEMDANHNRSVITLVGDPS--------KVVNAAFALIKKAAELI   73 (302)
T ss_pred             ccceeeccCccccccHHHHHHHHHHHhcCCceEEEEeccCCCCCceEEEEecChH--------HHHHHHHHHHHHHHHhh
Confidence            4799999999999999999999999999999999999999999999999999999        99999999999999999


Q ss_pred             CCCCCccCCCCCccccceeeeeCCCCCHHHHHHHHHHHHHhhccCCC---------------------------------
Q 039996           84 EPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDIGSGLQ---------------------------------  130 (241)
Q Consensus        84 Dm~~H~G~HPR~GavDvipf~Pl~~~t~~ec~~lA~~~a~~ig~~l~---------------------------------  130 (241)
                      ||++|+|+||||||+|||||+||.++|||||+++||.+|+++|++|+                                 
T Consensus        74 DM~~H~GeHpRmGA~DViPfvPl~d~tteecveiske~gkrvgeelgiPVylYe~aatrp~R~~La~IRkgqyE~l~eki  153 (302)
T COG3643          74 DMRNHKGEHPRMGAADVIPFVPLKDTTTEECVEISKELGKRVGEELGIPVYLYEDAATRPERQNLADIRKGQYEGLKEKI  153 (302)
T ss_pred             chhccCCCCCCCCccceeceeecccccHHHHHHHHHHHHHHhhHhhCCcEEEehhhccCcccccHHHHhhhhhhhHHHHh
Confidence            99999999999999999999999999999999999999999999998                                 


Q ss_pred             ------------------CeEEeccCCCeeeeeeeccCCCHHHHHHHHHHhhccCCCcccceEEeeEe-cCCeEEEEeec
Q 039996          131 ------------------GVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIR-GEDITEVECNL  191 (241)
Q Consensus       131 ------------------Gat~vGAr~~liayNV~L~t~dl~~Ar~IA~~vR~~~GGL~~VqAmgl~~-~~g~~qVs~NL  191 (241)
                                        |+|++|||.|||||||||+|+|++|+++||++||.++|||++|||+|+++ ++|++||||||
T Consensus       154 kep~WaPDfGp~~~~PtaG~t~iGaR~pLiAfNvNL~t~n~eI~kkIakaiR~s~GG~~~vkAi~~~L~dk~~vQVSMN~  233 (302)
T COG3643         154 KEPKWAPDFGPREVHPTAGVTAIGARMPLIAFNVNLDTSNMEIGKKIAKAIRFSSGGLRFVKAIAVELKDKGIVQVSMNM  233 (302)
T ss_pred             cCcccCCCCCccccCCCCcceEeecccceEEEEeccCcccchHHHHHHHHHhhcCCCeeeeeeeeeeeccCCeEEEEEee
Confidence                              99999999999999999999999999999999999999999999999998 58999999999


Q ss_pred             CCCCCCchHHHHHHHHHHHHhcCCeecceeeecCCHHHHHH
Q 039996          192 LKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIE  232 (241)
Q Consensus       192 ~d~~~t~~~~V~e~V~~~A~~~Gv~V~g~y~~g~~pe~ile  232 (241)
                      +||++||+||+||.||++|.||||.|+||+++|+.|++.|-
T Consensus       234 ~ny~KtpiyR~fEtiK~EA~Rygv~vv~sEivGl~P~~aL~  274 (302)
T COG3643         234 TNYEKTPIYRVFETIKMEANRYGVNVVGSEIVGLVPEQALI  274 (302)
T ss_pred             cccccCcHHHHHHHHHHHHHhcCCCcccceEeccchHHHHH
Confidence            99999999999999999999999999999999999997653

>PF07837 FTCD_N: Formiminotransferase domain, N-terminal subdomain; InterPro: IPR012886 The formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD) forms a homodimer, with each protomer being comprised of two subdomains

Probab=100.00  E-value=6.2e-57  Score=387.25  Aligned_cols=118  Identities=36%  Similarity=0.552  Sum_probs=103.2

Q ss_pred             ceeeEecccccCCCHHHHHHHHHHHhhCCCcEEEecCCCCCCCcceEEEeecCCCCCCCCcccHHHHHHHHHHHHHHcCC
Q 039996            5 MLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPLKSTVFAMIKAAFENIE   84 (241)
Q Consensus         5 ~lveCvpN~SEGR~~~~ie~I~~a~~~~~gv~lld~~~D~dyNRsv~T~vg~~~~~~~~~~~~v~~aa~~~~~~A~~~ID   84 (241)
                      ||+|||||||||||+++||+|++++++++|++|||+|+|+|||||||||+|+|+        +|.+|+|+++++|+++||
T Consensus         1 klveCvpN~SEgR~~~~ie~I~~a~~~~~gv~ll~~~~D~~~NRsv~T~vG~p~--------~v~~a~~~~~~~A~~~ID   72 (178)
T PF07837_consen    1 KLVECVPNFSEGRDKEVIEAIAKAARNVPGVKLLDVFSDADYNRSVITLVGEPE--------AVAEAAFAAIRKALELID   72 (178)
T ss_dssp             -EEEE--EES-SSSHHHHHHHHHHCCTSTTEEEEEEEEETTTTEEEEEEEE-HH--------HHHHHHHHHHHHHHCC--
T ss_pred             CeEEEeeeeccCCCHHHHHHHHHHHHcCCCCEEEecCCCCCCCCCeEEEeeChH--------HHHHHHHHHHHHHHHhcc
Confidence            699999999999999999999999999999999999999999999999999999        999999999999999999


Q ss_pred             CCCCccCCCCCccccceeeeeCCCCCHHHHHHHHHHHHHhhccCCC
Q 039996           85 PGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDIGSGLQ  130 (241)
Q Consensus        85 m~~H~G~HPR~GavDvipf~Pl~~~t~~ec~~lA~~~a~~ig~~l~  130 (241)
                      |++|+|+|||||||||||||||+++|||||+++|+++|++||++|+
T Consensus        73 m~~H~G~HPRlGavDvipf~Pl~~~t~eec~~~A~~~g~~i~~~l~  118 (178)
T PF07837_consen   73 MRKHSGEHPRLGAVDVIPFIPLSGVTMEECAELARELGERIGEELG  118 (178)
T ss_dssp             GGG---SS--SCSEEEEEEEEEES--HHHHHHHHHHHHHHHHHHHT
T ss_pred             hhcccCCCCCCCccceeeeeeCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999988

The formiminotransferase domain has an N-terminal subdomain that is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains []. This entry represents the N-terminal subdomain of the formiminotransferase domain.; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process; PDB: 2PFD_C 1QD1_B.

>PF02971 FTCD: Formiminotransferase domain; InterPro: IPR013802 The formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD) forms a homodimer, with each protomer being comprised of two subdomains

Probab=100.00  E-value=1.4e-34  Score=241.57  Aligned_cols=92  Identities=28%  Similarity=0.336  Sum_probs=79.0

Q ss_pred             CeeeeeeeccCCCHHHHHHHHHHhhccC------CCcccceEEeeEec-CCeEEEEeecCCCCCCchHHHHHHHHHHHHh
Q 039996          140 WVDNYNIPVFSTNIAAVRRIAKQVSERG------GGLASVQAMVLIRG-EDITEVECNLLKPSKIGGDKVQVEVDELAAV  212 (241)
Q Consensus       140 ~liayNV~L~t~dl~~Ar~IA~~vR~~~------GGL~~VqAmgl~~~-~g~~qVs~NL~d~~~t~~~~V~e~V~~~A~~  212 (241)
                      |||||||||+++| ++||+||+.||++|      |||++||||||+++ +|++||||||+||++||+|+|||+|+++|++
T Consensus         1 FLIAyNVnLl~T~-~iA~~IA~~iR~sgrg~~~PGgl~~VkAiG~~l~~~~~aQVSmNltd~~~Tpl~~vfe~v~~eA~~   79 (145)
T PF02971_consen    1 FLIAYNVNLLTTK-EIAKKIAKAIRESGRGKDQPGGLKYVKAIGWYLEERGIAQVSMNLTDYEKTPLHRVFEEVKREAAR   79 (145)
T ss_dssp             --EEEEEEESS-H-HHHHHHHHHHCTTTTCTTC--SCTTEEEEEEEETTTTEEEEEEEES-TTTS-HHHHHHHHHHHHHC
T ss_pred             CeEEEEeccCCcH-HHHHHHHHHHHhcCCCCCCCCCcceeeEeEEeeccCCeeEEEEeeecCCCCcHHHHHHHHHHHHHH
Confidence            8999999998888 99999999999999      99999999999995 7999999999999999999999999999999


Q ss_pred             cCCeecceeeecCCHHHHHH
Q 039996          213 EGMAVGKGYYTDLSQEEIIE  232 (241)
Q Consensus       213 ~Gv~V~g~y~~g~~pe~ile  232 (241)
                      |||+|+||+++|+.|.+.+.
T Consensus        80 ~Gv~v~gsElVGlvP~~All   99 (145)
T PF02971_consen   80 YGVPVVGSELVGLVPLDALL   99 (145)
T ss_dssp             TT--EEEEEEES-B-HHHHH
T ss_pred             hCCCccceEEEccccHHHHH
Confidence            99999999999999997763

The formiminotransferase domain has an N-terminal subdomain that is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains []. In humans, deficiency of this enzyme results in a disease phenotype []. This entry represents the C-terminal subdomain of the formiminotransferase domain.; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process; PDB: 1QD1_B 2PFD_C.

>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=90.95  E-value=2.5  Score=38.93  Aligned_cols=70  Identities=11%  Similarity=0.039  Sum_probs=50.0

Q ss_pred             CCHHHHHHHHHHhhccCCCcccceEEeeEec--------C---C-----eEEEEeecCCCCCCch---HHHHHHHHHHHH
Q 039996          151 TNIAAVRRIAKQVSERGGGLASVQAMVLIRG--------E---D-----ITEVECNLLKPSKIGG---DKVQVEVDELAA  211 (241)
Q Consensus       151 ~dl~~Ar~IA~~vR~~~GGL~~VqAmgl~~~--------~---g-----~~qVs~NL~d~~~t~~---~~V~e~V~~~A~  211 (241)
                      .|.++|++|++.++++|=.+...+.++|.|+        +   +     .++|++|..-+...++   ++.=+.|.+..+
T Consensus        96 g~~eLA~~i~~~~~~~g~~~~~~~~~~lDHG~~vPL~~l~~~~~~~~~pvVpi~in~~~~p~~~~~~~~~lG~al~~~i~  175 (279)
T PRK13365         96 GDVQLQAHIAECLVNDEFDLTVFQDKPIDHGCAAPLPLLWPHVPDWPGTVVPIAINVLQYPLPTARRCYRLGQALRRAIE  175 (279)
T ss_pred             CCHHHHHHHHHHHHHcCCCeeeccCCCCCchhhhHHHHhCCccccCCCCeEEEEEecccCCCCCHHHHHHHHHHHHHHHH
Confidence            4899999999999988766666667777653        1   2     6899999766555566   444556666665


Q ss_pred             h----cCCeecce
Q 039996          212 V----EGMAVGKG  220 (241)
Q Consensus       212 ~----~Gv~V~g~  220 (241)
                      +    .+|-+.+|
T Consensus       176 ~~~~d~rV~iIaS  188 (279)
T PRK13365        176 SYPEDLRVVVVGT  188 (279)
T ss_pred             hcCcCCCEEEEEe
Confidence            4    36777775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
1qd1_A	325	The Crystal Structure Of The Formiminotransferase D		7e-04

>pdb|1QD1|A Chain A, The Crystal Structure Of The Formiminotransferase Domain Of Formiminotransferase-Cyclodeaminase. Length = 325

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 6   LTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDS 65
           L  C    SE +N+  +++I +A       ++++     + NR  YT V +    +    
Sbjct: 3   LVECVPNFSEGKNQEVIDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFVGRPEDVVEG-- 60
Query: 66  CPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKS 120
                      +AA++ I+   H G HPR+G +D   F P+    +D+    A++
Sbjct: 61  ------ALNAARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQA 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
1tt9_A	541	Formimidoyltransferase-cyclodeaminase (formiminotr	9e-43
1qd1_A	325	Formiminotransferase-cyclodeaminase; functional di	1e-42

>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A Length = 541

 Score =  151 bits (381), Expect = 9e-43
 Identities = 52/293 (17%), Positives = 93/293 (31%), Gaps = 67/293 (22%)

Query: 1   MLKLMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPT 60
           M +L+   C    SE  N+  +++I QA       ++++     + NR  YT V      
Sbjct: 1   MSQLV--ECVPNFSEGNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVG----- 53

Query: 61  LSSDSCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKS 120
                  +     +  + A + I+   H G HPR+G +D   F P+    +D+    AK+
Sbjct: 54  ---QPECVVEGALSAARTASQLIDMRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKA 110

Query: 121 VVGDIGSGLQ-------------------------------------------------- 130
               +   L                                                   
Sbjct: 111 FGQRLAEELNVPVYLYGEAAQMPSRQTLPAIRAGEYEALPEKLKQAEWVPDFGPSSFVPS 170

Query: 131 -GVIVIGSTRWVDNYNIPVFSTN-----IAAVRRIAKQVSERGGGLASVQAM-VLIRGED 183
            G  V G+ +++  +NI + ST      IA   R   +  ++ G L  VQ +   +  ++
Sbjct: 171 WGATVTGARKFLIAFNINLLSTKEQAHRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKN 230

Query: 184 ITEVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIERYMK 236
           + +V  NLL         V  E    A    + V       L   + +     
Sbjct: 231 LAQVSTNLLDFEVTALHTVYEEARREAQELNLPVVGSQLVGLVPLKALLDAAA 283

>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1 Length = 325

 Score =  146 bits (369), Expect = 1e-42
 Identities = 52/285 (18%), Positives = 94/285 (32%), Gaps = 65/285 (22%)

Query: 6   LTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDS 65
           L  C    SE +N+  +++I +A       ++++     + NR  YT V           
Sbjct: 3   LVECVPNFSEGKNQEVIDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFVG--------RP 54

Query: 66  CPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDI 125
             +        +AA++ I+   H G HPR+G +D   F P+    +D+    A++    +
Sbjct: 55  EDVVEGALNAARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRL 114

Query: 126 GSGLQ---------------------------------------------------GVIV 134
              L                                                    G  V
Sbjct: 115 AEELGVPVYLYGEAARTAGRQSLPALRAGEYEALPEKLKQAEWAPDFGPSAFVPSWGATV 174

Query: 135 IGSTRWVDNYNIPVFSTN-----IAAVRRIAKQVSERGGGLASVQAM-VLIRGEDITEVE 188
            G+ +++  +NI + ST      IA   R   +  ++ G L  VQA+   +  +++ +V 
Sbjct: 175 AGARKFLLAFNINLLSTREQAHRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVS 234

Query: 189 CNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIER 233
            NLL     G   V  E    A    + V       L   + +  
Sbjct: 235 TNLLDFEVTGLHTVFEETCREAQELSLPVVGSQLVGLVPLKALLD 279

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
1qd1_A	325	Formiminotransferase-cyclodeaminase; functional di	100.0
1tt9_A	541	Formimidoyltransferase-cyclodeaminase (formiminotr	100.0

>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1

Probab=100.00  E-value=3.5e-93  Score=655.24  Aligned_cols=224  Identities=23%  Similarity=0.325  Sum_probs=216.8

Q ss_pred             cceeeEecccccCCCHHHHHHHHHHHhhCCCcEEEecCCCCCCCcceEEEeecCCCCCCCCcccHHHHHHHHHHHHHHcC
Q 039996            4 LMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPLKSTVFAMIKAAFENI   83 (241)
Q Consensus         4 ~~lveCvpN~SEGR~~~~ie~I~~a~~~~~gv~lld~~~D~dyNRsv~T~vg~~~~~~~~~~~~v~~aa~~~~~~A~~~I   83 (241)
                      ++|+|||||||||||+++||+|++++++++||+|||+|+|+|||||||||+|+|+        +|.+|+|+|+++|+++|
T Consensus         1 ~klveCvpNfSEGR~~~vIe~I~~a~~~~~gv~LLd~~~D~~~NRsv~T~vg~pe--------~v~eaa~~~~~~A~elI   72 (325)
T 1qd1_A            1 SQLVECVPNFSEGKNQEVIDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFVGRPE--------DVVEGALNAARAAYQLI   72 (325)
T ss_dssp             CCEEEECCEESCSSCHHHHHHHHHHHHTSTTCEEEEEEEETTTTEEEEEEEECHH--------HHHHHHHHHHHHHHHHC
T ss_pred             CceEEEeeeecccCCHHHHHHHHHHHhcCCCcEEEeCCCCCCCCCceEEEccChH--------HHHHHHHHHHHHHHHhc
Confidence            4799999999999999999999999999999999999999999999999999999        99999999999999999


Q ss_pred             CCCCCccCCCCCccccceeeeeCCCCCHHHHHHHHHHHHHhhccCCC---------------------------------
Q 039996           84 EPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDIGSGLQ---------------------------------  130 (241)
Q Consensus        84 Dm~~H~G~HPR~GavDvipf~Pl~~~t~~ec~~lA~~~a~~ig~~l~---------------------------------  130 (241)
                      ||++|+|+|||||||||||||||+++|||||+++|+++|++||++|+                                 
T Consensus        73 Dm~~H~G~HPRmGavDviPf~Pl~~~tmeec~~lA~~~g~~i~~~l~VPVyLYg~Aa~~p~rr~L~~iRrG~yegl~e~~  152 (325)
T 1qd1_A           73 DMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELGVPVYLYGEAARTAGRQSLPALRAGEYEALPEKL  152 (325)
T ss_dssp             CGGGCCCSSCCSBSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCEEEEETTCSSGGGSCHHHHHTTHHHHHHHHT
T ss_pred             cccccCCCCCCCCccceeeeeeCCCCCHHHHHHHHHHHHHHHhhhcCCcEEeehhhcCCCccCcHHHhcccccccchhhc
Confidence            99999999999999999999999999999999999999999999888                                 


Q ss_pred             ------------------CeEEeccCCCeeeeeeeccCCCHHHHHHHHHHhhccC------CCcccceEEeeEec-CCeE
Q 039996          131 ------------------GVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERG------GGLASVQAMVLIRG-EDIT  185 (241)
Q Consensus       131 ------------------Gat~vGAr~~liayNV~L~t~dl~~Ar~IA~~vR~~~------GGL~~VqAmgl~~~-~g~~  185 (241)
                                        |+|+||||+||+|||||| |+|+++||+||++||++|      |||++||||||+|+ +|++
T Consensus       153 ~~~~~~PD~Gp~~~~p~~Gat~vGAr~~liayNVnL-t~~~~~A~~IA~~vR~~gr~~~~pGGL~~VqAmg~~~~e~~~~  231 (325)
T 1qd1_A          153 KQAEWAPDFGPSAFVPSWGATVAGARKFLLAFNINL-LSTREQAHRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLA  231 (325)
T ss_dssp             TSGGGCCSBSCCCCCTTTBCEEEEECSCCEEEEEEE-SSCHHHHHHHHHHHSTTC------CCSTTEEEEEEEETTTTEE
T ss_pred             cCCCCCCCCCCCCCCCCcceEEEecCCceeeEeeec-cCcHHHHHHHHHHhhhcCCCCCCCCCccceEEeeEEecCCCeE
Confidence                              999999999999999999 777999999999999999      99999999999995 8999


Q ss_pred             EEEeecCCCCCCchHHHHHHHHHHHHhcCCeecceeeecCCHHHH-HHHHHH
Q 039996          186 EVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEI-IERYMK  236 (241)
Q Consensus       186 qVs~NL~d~~~t~~~~V~e~V~~~A~~~Gv~V~g~y~~g~~pe~i-le~~~~  236 (241)
                      ||||||+||++||+|+||++|+++|++||++|+|||++||+|.++ ++.+++
T Consensus       232 qVS~Nl~d~~~t~~~~V~e~V~~~A~~~Gv~V~gse~vGl~P~~al~~~a~y  283 (325)
T 1qd1_A          232 QVSTNLLDFEVTGLHTVFEETCREAQELSLPVVGSQLVGLVPLKALLDAAAF  283 (325)
T ss_dssp             EEEEEESCTTTSCHHHHHHHHHHHHHHTTCCEEEEEEESCBCHHHHHHHHHH
T ss_pred             EEEecccCCccCCHHHHHHHHHHHHHHcCCceeceEEeCcchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988 444433

>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A

Probab=100.00  E-value=5.9e-88  Score=655.26  Aligned_cols=219  Identities=23%  Similarity=0.311  Sum_probs=215.1

Q ss_pred             ceeeEecccccCCCHHHHHHHHHHHhhCCCcEEEecCCCCCCCcceEEEeecCCCCCCCCcccHHHHHHHHHHHHHHcCC
Q 039996            5 MLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPLKSTVFAMIKAAFENIE   84 (241)
Q Consensus         5 ~lveCvpN~SEGR~~~~ie~I~~a~~~~~gv~lld~~~D~dyNRsv~T~vg~~~~~~~~~~~~v~~aa~~~~~~A~~~ID   84 (241)
                      +|+|||||||||||+++||+|+++++++|||+|||+|+|+|||||||||+|+|+        +|.+|+|+++++|+++||
T Consensus         3 ~lvecvpn~SEgR~~~~i~~I~~a~~~~~gv~lld~~~d~~~NRtv~T~vg~p~--------~v~~a~~~~~~~A~~~ID   74 (541)
T 1tt9_A            3 QLVECVPNFSEGNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPE--------CVVEGALSAARTASQLID   74 (541)
T ss_pred             ceEEEeeeecccCCHHHHHHHHHHHhcCCCcEEEeCCCCCCCCCCeeEEcCCcH--------HHHHHHHHHHHHHHHhcC
Confidence            799999999999999999999999999999999999999999999999999999        999999999999999999


Q ss_pred             CCCCccCCCCCccccceeeeeCCCCCHHHHHHHHHHHHHhhccCCC----------------------------------
Q 039996           85 PGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDIGSGLQ----------------------------------  130 (241)
Q Consensus        85 m~~H~G~HPR~GavDvipf~Pl~~~t~~ec~~lA~~~a~~ig~~l~----------------------------------  130 (241)
                      |++|+|+|||||||||||||||+++|||||+++|+++|++||++|+                                  
T Consensus        75 m~~H~G~HPR~GavDvipf~Pl~~~t~eec~~~A~~~~~~i~~~l~vPvylYg~Aa~~p~r~~L~~iRrG~ye~~~~~~~  154 (541)
T 1tt9_A           75 MRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAFGQRLAEELNVPVYLYGEAAQMPSRQTLPAIRAGEYEALPEKLK  154 (541)
T ss_pred             ccccCCCCCCCCCcCccccccCCCCCHHHHHHHHHHHHHHHhhhcCCcEEeeHhhcCCCCcCcHHHhhccccccchhhcc
Confidence            9999999999999999999999999999999999999999999888                                  


Q ss_pred             -----------------CeEEeccCCCeeeeeeeccCCCHHHHHHHHHHhhccC------CCcccceEEeeEec-CCeEE
Q 039996          131 -----------------GVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERG------GGLASVQAMVLIRG-EDITE  186 (241)
Q Consensus       131 -----------------Gat~vGAr~~liayNV~L~t~dl~~Ar~IA~~vR~~~------GGL~~VqAmgl~~~-~g~~q  186 (241)
                                       |+|+||||+||+|||||| |+|+++||+||++||++|      |||++||||||+|+ +|++|
T Consensus       155 ~~~~~PD~Gp~~~~~~~G~t~vGAr~~liayNV~L-t~~~~~a~~IA~~vr~~gr~~~~~Ggl~~Vqamg~~~~~~~~~q  233 (541)
T 1tt9_A          155 QAEWVPDFGPSSFVPSWGATVTGARKFLIAFNINL-LSTKEQAHRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQ  233 (541)
T ss_pred             CCCCCCCCCCCCCCCCCceEEEecCcceeeeeeec-cccHHHHHHHHHHhhhcCCCCCCCCCccceeEeeEeecCCCeEE
Confidence                             999999999999999999 889999999999999999      99999999999995 89999


Q ss_pred             EEeecCCCCCCchHHHHHHHHHHHHhcCCeecceeeecCCHHHHHH
Q 039996          187 VECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIE  232 (241)
Q Consensus       187 Vs~NL~d~~~t~~~~V~e~V~~~A~~~Gv~V~g~y~~g~~pe~ile  232 (241)
                      |||||+||++||+|+||++|+++|++|||+|+|||++||+|.++|-
T Consensus       234 Vs~Nl~d~~~t~~~~v~e~v~~~A~~~gv~v~gse~vGl~P~~al~  279 (541)
T 1tt9_A          234 VSTNLLDFEVTALHTVYEEARREAQELNLPVVGSQLVGLVPLKALL  279 (541)
T ss_pred             EEecccCCccCCHHHHHHHHHHHHHHcCCccccceEeccchHHHHH
Confidence            9999999999999999999999999999999999999999997663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1qd1a1	179	d.58.34.1 (A:2-180) Formiminotransferase domain of	2e-29
d1qd1a2	146	d.58.34.1 (A:181-326) Formiminotransferase domain	4e-10

>d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
family: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
domain: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  106 bits (267), Expect = 2e-29
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 5   MLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSD 64
            L  C    SE +N+  +++I +A       ++++     + NR  YT V          
Sbjct: 2   QLVECVPNFSEGKNQEVIDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFVG--------R 53

Query: 65  SCPLKSTVFAMIKAAFENIEPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGD 124
              +        +AA++ I+   H G HPR+G +D   F P+    +D+    A++    
Sbjct: 54  PEDVVEGALNAARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQR 113

Query: 125 IGSGL 129
           +   L
Sbjct: 114 LAEEL 118

>d1qd1a2 d.58.34.1 (A:181-326) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
family: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
domain: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 54.3 bits (131), Expect = 4e-10
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 144 YNIPVFSTNIAAVRRIAKQVSERG------GGLASVQAM-VLIRGEDITEVECNLLKPSK 196
           +NI + ST   A  RIA  + E+G      G L  VQA+   +  +++ +V  NLL    
Sbjct: 5   FNINLLSTREQA-HRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVSTNLLDFEV 63

Query: 197 IGGDKVQVEVDELAAVEGMAV 217
            G   V  E    A    + V
Sbjct: 64  TGLHTVFEETCREAQELSLPV 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1qd1a1	179	Formiminotransferase domain of formiminotransferas	100.0
d1qd1a2	146	Formiminotransferase domain of formiminotransferas	100.0

>d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
family: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
domain: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=8.6e-58  Score=389.64  Aligned_cols=119  Identities=23%  Similarity=0.375  Sum_probs=117.5

Q ss_pred             cceeeEecccccCCCHHHHHHHHHHHhhCCCcEEEecCCCCCCCcceEEEeecCCCCCCCCcccHHHHHHHHHHHHHHcC
Q 039996            4 LMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPLKSTVFAMIKAAFENI   83 (241)
Q Consensus         4 ~~lveCvpN~SEGR~~~~ie~I~~a~~~~~gv~lld~~~D~dyNRsv~T~vg~~~~~~~~~~~~v~~aa~~~~~~A~~~I   83 (241)
                      +||+|||||||||||+++||+|+++++++||++|||+|+|+|||||||||+|+|+        +|.+|+|+++++|+++|
T Consensus         1 ~klieCvpNiSEGR~~~~I~~I~~a~~~~~gv~lL~v~~D~d~NRtV~T~vg~p~--------~v~~aa~~~~~~A~e~I   72 (179)
T d1qd1a1           1 SQLVECVPNFSEGKNQEVIDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFVGRPE--------DVVEGALNAARAAYQLI   72 (179)
T ss_dssp             CCEEEECCEESCSSCHHHHHHHHHHHHTSTTCEEEEEEEETTTTEEEEEEEECHH--------HHHHHHHHHHHHHHHHC
T ss_pred             CceEEEeeeeccCCCHHHHHHHHHHHhcCCCcEEEeCCCCCCCCCeEEEEecChH--------HHHHHHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999999999999999999999999        99999999999999999


Q ss_pred             CCCCCccCCCCCccccceeeeeCCCCCHHHHHHHHHHHHHhhccCCC
Q 039996           84 EPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDIGSGLQ  130 (241)
Q Consensus        84 Dm~~H~G~HPR~GavDvipf~Pl~~~t~~ec~~lA~~~a~~ig~~l~  130 (241)
                      ||++|+|+|||||||||||||||+++|||||+++|+++|++||++|+
T Consensus        73 Dm~~H~G~HPR~GavDv~PfiPl~~~t~eec~~lA~~~a~~i~~~l~  119 (179)
T d1qd1a1          73 DMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELG  119 (179)
T ss_dssp             CGGGCCCSSCCSBSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             ChhhccccCCcCcccceeeeecCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999987

>d1qd1a2 d.58.34.1 (A:181-326) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
family: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
domain: Formiminotransferase domain of formiminotransferase-cyclodeaminase.
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.1e-34  Score=239.61  Aligned_cols=92  Identities=26%  Similarity=0.277  Sum_probs=88.5

Q ss_pred             CeeeeeeeccCCCHHHHHHHHHHhhccC------CCcccceEEeeEec-CCeEEEEeecCCCCCCchHHHHHHHHHHHHh
Q 039996          140 WVDNYNIPVFSTNIAAVRRIAKQVSERG------GGLASVQAMVLIRG-EDITEVECNLLKPSKIGGDKVQVEVDELAAV  212 (241)
Q Consensus       140 ~liayNV~L~t~dl~~Ar~IA~~vR~~~------GGL~~VqAmgl~~~-~g~~qVs~NL~d~~~t~~~~V~e~V~~~A~~  212 (241)
                      |||||||||+|+| ++|++||+.||++|      |||++||||||+++ +|++||||||+||++||+|+|||+|+++|++
T Consensus         1 fLiAYNVnL~t~~-~~A~~IA~~iRe~Gr~~r~~Ggl~~Vka~G~~l~e~~~aQVSmNl~d~~~t~~h~vfe~v~~~A~~   79 (146)
T d1qd1a2           1 FLLAFNINLLSTR-EQAHRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVSTNLLDFEVTGLHTVFEETCREAQE   79 (146)
T ss_dssp             CCEEEEEEESSCH-HHHHHHHHHHSTTC------CCSTTEEEEEEEETTTTEEEEEEEESCTTTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEeccCCCH-HHHHHHHHHHHHcCCccCCCCCccceeEeeEEECCCCEEEEEEeecccccCCHHHHHHHHHHHHHH
Confidence            8999999999998 99999999999998      99999999999995 6999999999999999999999999999999


Q ss_pred             cCCeecceeeecCCHHHHHH
Q 039996          213 EGMAVGKGYYTDLSQEEIIE  232 (241)
Q Consensus       213 ~Gv~V~g~y~~g~~pe~ile  232 (241)
                      +|++|+||+++|+.|.+++-
T Consensus        80 ~Gv~V~GSElVGLvP~~All   99 (146)
T d1qd1a2          80 LSLPVVGSQLVGLVPLKALL   99 (146)
T ss_dssp             TTCCEEEEEEESCBCHHHHH
T ss_pred             cCCCccccEEEcceeHHHHH
Confidence            99999999999999997764