Citrus Sinensis ID: 040006

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHccccHHHHHHHHHHHHHHccccccc
ccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccc
wdighidaLPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKwlnegyvpsmdeyksvslrSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK
WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK
WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK
**IGHIDALPEYMKFIFKTLIGVYSEA********RSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDI****
WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGH*
WDIGHIDALPEYMKFIFKTLIGVY***********RSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK
WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAG**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query129 2.2.26 [Sep-21-2011]
Q94JS8560 (E)-beta-farnesene syntha N/A no 1.0 0.230 0.615 2e-39
Q39760554 (+)-delta-cadinene syntha N/A no 1.0 0.232 0.441 3e-28
O49853554 (+)-delta-cadinene syntha N/A no 1.0 0.232 0.434 9e-28
F6M8H4559 Probable sesquiterpene sy N/A no 1.0 0.230 0.426 1e-27
E3W207559 Sesquiterpene synthase OS N/A no 1.0 0.230 0.434 1e-27
Q6Q3H3557 (-)-germacrene D synthase no no 1.0 0.231 0.441 2e-27
P93665554 (+)-delta-cadinene syntha N/A no 1.0 0.232 0.426 3e-27
B5A435559 Sesquiterpene synthase OS N/A no 1.0 0.230 0.418 3e-27
Q43714555 (+)-delta-cadinene syntha N/A no 1.0 0.232 0.410 3e-27
O23945556 (-)-alpha-pinene synthase N/A no 1.0 0.232 0.457 3e-27
>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1 Back     alignment and function desciption
 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 99/130 (76%), Gaps = 1/130 (0%)

Query: 1   WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
           WDIG ID LPEYMKFI K L+ +Y EAEEEL+KE RSY I YA +  QEL++ YF EAKW
Sbjct: 334 WDIGLIDTLPEYMKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKW 393

Query: 61  LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGD-IASREIFEWEMSNPKIIIAAETIF 119
           L +GYVP+ DEYKSV+LRSIG   +AVASF+ +GD IA+++ FE  + N K + A ETI 
Sbjct: 394 LYKGYVPTFDEYKSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIG 453

Query: 120 RFLDDIAGHK 129
           R +DDIAG+K
Sbjct: 454 RLMDDIAGYK 463
Sesquiterpene cyclase catalyzing the production of beta-farnesene from farnesyl diphosphate.
Citrus junos (taxid: 135197)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 4EC: 7
>sp|Q39760|DCS2_GOSAR (+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1 Back     alignment and function description
>sp|O49853|DCS4_GOSAR (+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function description
>sp|P93665|DCS1_GOSHI (+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1 Back     alignment and function description
>sp|O23945|PINS_FRAVE (-)-alpha-pinene synthase OS=Fragaria vesca PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query129
313585892 551 Tps2-1 [Clausena lansium] 1.0 0.234 0.875 5e-63
75250254 560 RecName: Full=(E)-beta-farnesene synthas 1.0 0.230 0.615 1e-37
300079902 560 (E)-beta-farnesene synthase [Citrus reti 1.0 0.230 0.615 2e-37
255565287 550 (+)-delta-cadinene synthase isozyme A, p 1.0 0.234 0.480 1e-30
224115384 569 predicted protein [Populus trichocarpa] 1.0 0.226 0.496 1e-30
60266878 565 germacrene-D synthase [Actinidia delicio 1.0 0.228 0.480 4e-30
33316389 548 valencene synthase [Citrus sinensis] 1.0 0.235 0.426 5e-29
261343328 548 terpene synthase 1 [Citrus sinensis] 1.0 0.235 0.426 5e-29
19880625 548 putative terpene synthase [Citrus x para 1.0 0.235 0.426 5e-29
391358399 549 terpene synthase 5 [Matricaria chamomill 1.0 0.234 0.441 1e-28
>gi|313585892|gb|ADR71055.1| Tps2-1 [Clausena lansium] Back     alignment and taxonomy information
 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 113/129 (87%), Positives = 125/129 (96%)

Query: 1   WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
           WD+GH DALPEYMKFIFKTLI VYSEAE+EL+KE RSYSI YAIRSFQELVMKYFCEAKW
Sbjct: 323 WDLGHRDALPEYMKFIFKTLIDVYSEAEQELAKEGRSYSIHYAIRSFQELVMKYFCEAKW 382

Query: 61  LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
           LN+GYVPS+D+YKSVSLRSIGFLPIAVASF+FMGDIA++E+FEWEM+NPKIIIAAETIFR
Sbjct: 383 LNKGYVPSLDDYKSVSLRSIGFLPIAVASFVFMGDIATKEVFEWEMNNPKIIIAAETIFR 442

Query: 121 FLDDIAGHK 129
           FLDDIAGH+
Sbjct: 443 FLDDIAGHR 451

Source: Clausena lansium

Species: Clausena lansium

Genus: Clausena

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|75250254|sp|Q94JS8.1|FARS_CITJU RecName: Full=(E)-beta-farnesene synthase; Short=CjFS; AltName: Full=Terpene synthase 10 gi|14134188|gb|AAK54279.1| (E)-beta-farnesene synthase [Citrus junos] Back     alignment and taxonomy information
>gi|300079902|gb|ADJ67476.1| (E)-beta-farnesene synthase [Citrus reticulata] Back     alignment and taxonomy information
>gi|255565287|ref|XP_002523635.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|223537087|gb|EEF38721.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224115384|ref|XP_002317018.1| predicted protein [Populus trichocarpa] gi|222860083|gb|EEE97630.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|60266878|gb|AAX16121.1| germacrene-D synthase [Actinidia deliciosa] Back     alignment and taxonomy information
>gi|33316389|gb|AAQ04608.1|AF441124_1 valencene synthase [Citrus sinensis] Back     alignment and taxonomy information
>gi|261343328|gb|ACX70155.1| terpene synthase 1 [Citrus sinensis] Back     alignment and taxonomy information
>gi|19880625|gb|AAM00426.1|AF411120_1 putative terpene synthase [Citrus x paradisi] Back     alignment and taxonomy information
>gi|391358399|gb|AFM43738.1| terpene synthase 5 [Matricaria chamomilla var. recutita] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query129
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 1.0 0.228 0.410 1.2e-26
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 1.0 0.230 0.418 3.3e-26
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 1.0 0.228 0.395 7e-25
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.976 0.227 0.419 1.7e-22
UNIPROTKB|Q49SP4545 Q49SP4 "Germacrene D synthase 0.984 0.233 0.382 9.3e-22
UNIPROTKB|Q49SP6554 Q49SP6 "Germacrene D synthase 0.984 0.229 0.382 1.6e-21
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 1.0 0.225 0.384 4.7e-21
TAIR|locus:2020658611 AT1G70080 [Arabidopsis thalian 1.0 0.211 0.387 2.5e-20
UNIPROTKB|Q8LSC3583 Q8LSC3 "Germacrene A synthase 0.968 0.214 0.376 1.3e-19
TAIR|locus:2178657547 TPS21 "terpene synthase 21" [A 0.937 0.221 0.388 1.8e-19
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
 Score = 306 (112.8 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 53/129 (41%), Positives = 82/129 (63%)

Query:     1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
             W I  +D LP+YMK I+KT++ VY E EEE+ K+  SY   Y I + + L   YF EA+W
Sbjct:   339 WSISCLDQLPDYMKLIYKTVLEVYDEIEEEMIKQGTSYRTAYGIEAIKSLTRNYFMEAEW 398

Query:    61 LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
               + Y P+ DE+  ++L++ G+  + + SF+ MG++  RE F+W +S P  + A+ TI R
Sbjct:   399 REKKYTPTTDEHMRLALKTCGYTSLIIISFLGMGEVVKREAFDWVLSEPDFVKASLTINR 458

Query:   121 FLDDIAGHK 129
              +DDI GH+
Sbjct:   459 LVDDIVGHE 467
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA
GO:1901934 "bicyclogermacrene biosynthetic process" evidence=IDA
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP6 Q49SP6 "Germacrene D synthase 2" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
TAIR|locus:2020658 AT1G70080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LSC3 Q8LSC3 "Germacrene A synthase long form" [Cichorium intybus (taxid:13427)] Back     alignment and assigned GO terms
TAIR|locus:2178657 TPS21 "terpene synthase 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query129
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 8e-46
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 3e-37
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 2e-36
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 2e-11
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 1e-04
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  155 bits (393), Expect = 8e-46
 Identities = 63/129 (48%), Positives = 86/129 (66%)

Query: 1   WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
           WDI  ID LPEYMK +FK L+   +E EEEL KE  SY + Y   ++++LV  Y  EAKW
Sbjct: 319 WDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKW 378

Query: 61  LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
            +EGYVP+ +EY   +L SIG  P+ + SF+ MGDI + E FEW  S PK++ A+ TI R
Sbjct: 379 AHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGR 438

Query: 121 FLDDIAGHK 129
            ++DIA ++
Sbjct: 439 LMNDIATYE 447

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 129
PLN02279 784 ent-kaur-16-ene synthase 100.0
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 99.86
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 99.81
PLN02592800 ent-copalyl diphosphate synthase 99.81
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 99.63
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.0
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 93.73
COG0864136 NikR Predicted transcriptional regulators containi 88.15
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 86.6
TIGR02749 322 prenyl_cyano solanesyl diphosphate synthase. Membe 84.26
PLN02890 422 geranyl diphosphate synthase 83.28
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information 
Probab=100.00  E-value=3e-35  Score=254.19  Aligned_cols=127  Identities=26%  Similarity=0.423  Sum_probs=121.2

Q ss_pred             CCcc-ccCcCChhHHHHHHHHHHHHHHHHHH-HHhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhh
Q 040006            1 WDIG-HIDALPEYMKFIFKTLIGVYSEAEEE-LSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLR   78 (129)
Q Consensus         1 WD~~-~~~~Lpeymk~~f~~l~~~~~e~~~~-~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~   78 (129)
                      ||++ +++.||+|||+||.+|+++++|++.+ +.+||+ ++++|+|++|++++++|++||||+++||+||++|||+||.+
T Consensus       552 WD~~~~~~~lpeymki~f~aL~~t~nei~~~~~~~qGr-~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~v  630 (784)
T PLN02279        552 WDVNGSPDFCSEQVEIIFSALRSTISEIGDKAFTWQGR-NVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYV  630 (784)
T ss_pred             hccccchhhCcHHHHHHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchh
Confidence            9998 67999999999999999999999986 557777 99999999999999999999999999999999999999999


Q ss_pred             hhchhHHHHHHHHhcCCCCChHHHhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006           79 SIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK  129 (129)
Q Consensus        79 s~g~~~~~~~s~~~~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~s~~  129 (129)
                      |+|++++++++++++|+.+|+++++| .++|+|+++++.|+||+|||+||+
T Consensus       631 S~~l~~i~l~~~~~~G~~l~eev~e~-~~~~~L~~l~s~I~RLlNDI~S~e  680 (784)
T PLN02279        631 SFALGPIVLPALYLVGPKLSEEVVDS-PELHKLYKLMSTCGRLLNDIRGFK  680 (784)
T ss_pred             hhhhHHHHHHHHHHhCCCCCHHHHhC-cchhHHHHHHHHHHHHHHhccccH
Confidence            99999999999999999999999999 599999999999999999999985

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>COG0864 NikR Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription] Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query129
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 3e-28
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 2e-19
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 2e-19
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-19
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 2e-19
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-19
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 2e-19
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-19
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-19
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-19
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 5e-11
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 2e-10
2j5c_A569 Rational Conversion Of Substrate And Product Specif 2e-10
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 1e-09
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 7e-09
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 4e-07
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 7e-07
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/129 (43%), Positives = 82/129 (63%)
Query: 1   WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
           WDI  ID +PEYMK  +K L+ VY E  + +++  R Y ++YA  +   L   Y  EAKW
Sbjct: 329 WDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKW 388
Query: 61  LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
             + Y PS +E+K+ +L + G+  +A+ SF+ MGDI + E F+W  S+PKII A+  I R
Sbjct: 389 TLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICR 448
Query: 121 FLDDIAGHK 129
           F+DD+A HK
Sbjct: 449 FMDDVAEHK 457
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query129
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 5e-34
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 2e-33
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 8e-33
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 9e-33
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 1e-32
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-32
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-31
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 6e-31
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-30
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 5e-14
3kb9_A 382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 5e-11
1ps1_A 337 Pentalenene synthase; antibiotic biosynthesis, ses 6e-09
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
 Score =  123 bits (309), Expect = 5e-34
 Identities = 27/129 (20%), Positives = 57/129 (44%)

Query: 1   WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
           WD+  +D +P+ MK  F      +++  +E  + +    + Y    ++  +  Y  EA+W
Sbjct: 560 WDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEW 619

Query: 61  LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
               YVPS +EY   +  SI    + + S +F G++ + E+        + +       R
Sbjct: 620 SEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGR 679

Query: 121 FLDDIAGHK 129
            ++D   ++
Sbjct: 680 LVNDTKTYQ 688
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query129
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 99.92
1ps1_A 337 Pentalenene synthase; antibiotic biosynthesis, ses 99.91
3kb9_A 382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 99.9
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 99.89
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 99.79
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 99.66
1yyq_A 374 Trichodiene synthase; terpenoid cyclase fold, site 92.61
3lmd_A 360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 86.65
2q80_A 301 Geranylgeranyl pyrophosphate synthetase; isoprenoi 84.12
3nf2_A 352 Putative polyprenyl synthetase; isoprenyl diphosph 82.86
3rmg_A 334 Octaprenyl-diphosphate synthase; structural genomi 82.46
3mzv_A 341 Decaprenyl diphosphate synthase; transferase, stru 81.0
3oyr_A 345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 80.74
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=6.1e-43  Score=292.18  Aligned_cols=129  Identities=43%  Similarity=0.812  Sum_probs=126.8

Q ss_pred             CCccccCcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhh
Q 040006            1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSI   80 (129)
Q Consensus         1 WD~~~~~~Lpeymk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~   80 (129)
                      ||++++++||+|||+||++|+|+++||++++.++||+++++|++++|+++++||++||||+++||+||+||||+||.+|+
T Consensus       329 WD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSs  408 (554)
T 3g4d_A          329 WDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTC  408 (554)
T ss_dssp             CCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGS
T ss_pred             cCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceee
Confidence            99999999999999999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHhcCCCCChHHHhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006           81 GFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK  129 (129)
Q Consensus        81 g~~~~~~~s~~~~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~s~~  129 (129)
                      |+++++++++++||+.+|+++++|+.++|+|++++++|+||+|||+||+
T Consensus       409 g~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k  457 (554)
T 3g4d_A          409 GYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHK  457 (554)
T ss_dssp             CHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhh
Confidence            9999999999999999999999999999999999999999999999985
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Back     alignment and structure
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 129
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 4e-35
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 2e-34
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 2e-18
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 7e-11
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  121 bits (305), Expect = 4e-35
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 1/130 (0%)

Query: 1   WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
           WD   I  LP YM+  +  +    S+A  ++ KE   + +QY  +S  +LV  YF EAKW
Sbjct: 103 WDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKW 162

Query: 61  LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGD-IASREIFEWEMSNPKIIIAAETIF 119
            + GY PS+DEY +++  S+    I   ++    +      + +       I+  A  I 
Sbjct: 163 YHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIIL 222

Query: 120 RFLDDIAGHK 129
           R  DD+    
Sbjct: 223 RLPDDLGTSY 232
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query129
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 99.7
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.35
d1kiya_ 354 Trichodiene synthase {Fusarium sporotrichioides [T 90.23
d2q80a1 291 Geranylgeranyl pyrophosphate synthetase {Human (Ho 90.15
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=3e-42  Score=271.15  Aligned_cols=129  Identities=29%  Similarity=0.511  Sum_probs=121.2

Q ss_pred             CCccccCcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhh
Q 040006            1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSI   80 (129)
Q Consensus         1 WD~~~~~~Lpeymk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~   80 (129)
                      ||++++++||+|||+||.+++++++|+++++.+++|+++++|+|++|++++++|++||||+++||+||+||||+||.+|+
T Consensus       103 Wd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EakW~~~g~vPt~eEYl~~~~vS~  182 (328)
T d1n1ba2         103 WDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISV  182 (328)
T ss_dssp             TCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred             cCCcccccCcchHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhceehh
Confidence            99999999999999999999999999999888888789999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHhcCCCCC-hHHHhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006           81 GFLPIAVASFIFMGDIAS-REIFEWEMSNPKIIIAAETIFRFLDDIAGHK  129 (129)
Q Consensus        81 g~~~~~~~s~~~~g~~~~-~e~~~~~~~~p~i~~~~~~i~RL~nDi~s~~  129 (129)
                      |+++++++++++||+.++ +++++|+.++|++++++++|+||+|||+||+
T Consensus       183 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~RL~nDi~~~~  232 (328)
T d1n1ba2         183 ASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSY  232 (328)
T ss_dssp             CHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---
T ss_pred             hHHHHHHHHHHhCCCccchHHHHHHHhccHHHHHHHHHHHHHHhhhhhHH
Confidence            999999999999998765 5579999999999999999999999999986
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure