Citrus Sinensis ID: 040031

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHWFWSHYVGEDDFVPGGNVEMHKGSNATKNVNNAPN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHccHHHHEcccccccccccHHHccccccccccccccc
Coil and Loop (DISEMBL)
MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYfflpetkgipieemgRVWKTHWFWSHyvgeddfvpggnvemhkgsnatknvnnapn
Flexible Loop (DISEMBL)
MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHWFWSHYVGEDDFVPGGNVEmhkgsnatknvnnapn
Low Complexity Region (SEG)
MLFTFLVAQVFLNMLCHlkfglflffaffmlvmsffIYFFLPETKGIPIEEMGRVWKTHWFWSHYVGEDDFVPGGNVEMHKGSNATKNVNNAPN
Disordered region (IsUnstruct)
*LFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHWFWSHYVGEDDFVPG********************
Disordered Region (DISOPRED)
MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHWFWSHYV****************************
Disordered Region (DISEMBL)
MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHWFWSHYVGEDDFVPGGNVEMHKGSNATKNVNNAPN
Disordered Region (DISPRO)
MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHWFWSHYVGE**************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHWFWSHYVGEDDFVPGGNVEMHKGSNATKNVNNAPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
Q9LT15	514	Sugar transport protein 1	yes	no	0.787	0.143	0.662	3e-25
Q41144	523	Sugar carrier protein C O	N/A	no	0.936	0.168	0.685	5e-25
Q9SX48	517	Sugar transport protein 9	no	no	0.808	0.147	0.631	2e-23
P23586	522	Sugar transport protein 1	no	no	0.925	0.166	0.637	3e-23
Q94AZ2	526	Sugar transport protein 1	no	no	0.723	0.129	0.619	2e-20
O65413	508	Sugar transport protein 1	no	no	0.702	0.129	0.742	6e-19
Q39228	514	Sugar transport protein 4	no	no	0.872	0.159	0.626	6e-19
O04249	513	Sugar transport protein 7	no	no	0.680	0.124	0.609	6e-19
Q07423	510	Hexose carrier protein HE	N/A	no	0.723	0.133	0.573	8e-19
Q10710	522	Sugar carrier protein A O	N/A	no	0.957	0.172	0.455	1e-17

>sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 57/74 (77%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           M FTFL+ Q FL MLCH+KFGLF FFA  + +M+ FIYF LPETKG+PIEEMGRVWK HW
Sbjct: 434 MFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEMGRVWKQHW 493

Query: 61  FWSHYVGEDDFVPG 74
           FW  Y+ ED  + G
Sbjct: 494 FWKKYIPEDAIIGG 507

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 74/89 (83%), Gaps = 1/89 (1%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           M FTF+VAQVFL MLCHLKFGLF+FF+FF+L+MS F+Y+FLPETKGIPIEEMG+VWK HW
Sbjct: 436 MFFTFVVAQVFLIMLCHLKFGLFIFFSFFVLIMSIFVYYFLPETKGIPIEEMGQVWKQHW 495

Query: 61  FWSHYVGEDDFVPGGNVEMHKGSNATKNV 89
           +WS YV ++D+ P G +EM K     KNV
Sbjct: 496 YWSRYVVDEDY-PNGGLEMGKEGRIPKNV 523

Ricinus communis (taxid: 3988)

>sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 56/76 (73%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           M FTFL+ Q FL MLCH+KFGLF FF   + VM+ FIYF LPETKG+PIEEMGRVWK H 
Sbjct: 435 MFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEMGRVWKQHP 494

Query: 61  FWSHYVGEDDFVPGGN 76
           FW  Y+ +D  + GG 
Sbjct: 495 FWKRYMPDDAVIGGGE 510

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose.

Arabidopsis thaliana (taxid: 3702)

>sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 75/91 (82%), Gaps = 4/91 (4%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           M+FTF++AQ+FL MLCHLKFGLFL FAFF++VMS F+Y FLPETKGIPIEEMG+VW++HW
Sbjct: 434 MIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGIPIEEMGQVWRSHW 493

Query: 61  FWSHYVGEDDFVPGGNVEMHKGSN--ATKNV 89
           +WS +V + ++  G  +EM K SN   TK+V
Sbjct: 494 YWSRFVEDGEY--GNALEMGKNSNQAGTKHV 522

Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 58/71 (81%), Gaps = 3/71 (4%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMG-RVWKTH 59
           +LFTF++AQ FL+MLCH KFG+F+FF+ ++L+MS F+ F LPETK IPIEEM  RVWK H
Sbjct: 433 LLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKNIPIEEMTERVWKKH 492

Query: 60  WFWSHYVGEDD 70
           WFW+ ++  DD
Sbjct: 493 WFWARFM--DD 501

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|O65413|STP12_ARATH Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/66 (74%), Positives = 61/66 (92%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           M+FTFL+AQVFL MLCHLKFGLF+FFAFF++VMS F+Y FLPET+G+PIEEM RVW++HW
Sbjct: 432 MIFTFLIAQVFLMMLCHLKFGLFIFFAFFVVVMSIFVYLFLPETRGVPIEEMNRVWRSHW 491

Query: 61  FWSHYV 66
           +WS +V
Sbjct: 492 YWSKFV 497

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 63/83 (75%), Gaps = 1/83 (1%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           M FTFLVAQ+FL MLCH+KFGLF FFAFF+++M+ FIY  LPETK +PIEEM RVWK HW
Sbjct: 432 MFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPETKNVPIEEMNRVWKAHW 491

Query: 61  FWSHYVGEDDFVPGGNVEMHKGS 83
           FW  ++  D+ V  G  EM + S
Sbjct: 492 FWGKFI-PDEAVNMGAAEMQQKS 513

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose.

Arabidopsis thaliana (taxid: 3702)

>sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 50/64 (78%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           +LFTF++AQ FL +LC  KFG+FLFFA ++ VM+ F+YF LPETKG+PIEEM  +W  HW
Sbjct: 433 LLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMTLLWSKHW 492

Query: 61  FWSH 64
           FW  
Sbjct: 493 FWKK 496

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 53/68 (77%)

Query: 2   LFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHWF 61
           LFTF+VAQ FL+MLCH K G+F FF  +++VM+ F++F LPETK +PIE+M  VW+ HWF
Sbjct: 432 LFTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFVHFLLPETKKVPIEKMDIVWRDHWF 491

Query: 62  WSHYVGED 69
           W   +GE+
Sbjct: 492 WKKIIGEE 499

Active uptake of hexoses. Probable glucose/hydrogen symport.

Ricinus communis (taxid: 3988)

>sp|Q10710|STA_RICCO Sugar carrier protein A OS=Ricinus communis GN=STA PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 55/90 (61%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           + FTF++AQ F ++LC  KFG+FLFFA ++ VM+ F+Y FLPETKG+PIEEM  +W+ HW
Sbjct: 433 LFFTFVIAQSFPSLLCAFKFGIFLFFAGWVTVMTAFVYIFLPETKGVPIEEMIFLWRKHW 492

Query: 61  FWSHYVGEDDFVPGGNVEMHKGSNATKNVN 90
           FW   V     V      M  G      + 
Sbjct: 493 FWKKIVPGQPEVDDSRESMEMGEAVASRIK 522

Ricinus communis (taxid: 3988)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
190360752	291	hexose transporter [Citrus sinensis]	0.946	0.305	0.966	1e-35
4138722	519	hexose transporter [Vitis vinifera]	0.914	0.165	0.674	2e-27
449523553	524	PREDICTED: sugar carrier protein C-like	0.882	0.158	0.666	1e-25
121495685	521	hypothetical protein [Populus tremula x	0.946	0.170	0.707	9e-25
449433894	538	PREDICTED: sugar carrier protein C-like	0.797	0.139	0.693	1e-24
224114097	521	predicted protein [Populus trichocarpa]	0.946	0.170	0.696	2e-24
449527119	515	PREDICTED: sugar transport protein 10-li	0.851	0.155	0.654	3e-24
224078842	522	predicted protein [Populus trichocarpa]	0.946	0.170	0.719	4e-24
57283538	522	monosaccharide transporter [Populus trem	0.946	0.170	0.719	5e-24
30349804	523	monosaccharide-H+ symporter [Datisca glo	0.946	0.170	0.685	7e-24

>gi|190360752|gb|ACE76848.1| hexose transporter [Citrus sinensis]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/89 (96%), Positives = 88/89 (98%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           MLFTFLVAQVFLNMLCHLKFGLFLFFAFF+LVMSFF+YFFLPETKGIPIEEMGRVWKTHW
Sbjct: 203 MLFTFLVAQVFLNMLCHLKFGLFLFFAFFVLVMSFFVYFFLPETKGIPIEEMGRVWKTHW 262

Query: 61  FWSHYVGEDDFVPGGNVEMHKGSNATKNV 89
           FWS YVGEDDFVPGGNVEMHKGSNATKNV
Sbjct: 263 FWSRYVGEDDFVPGGNVEMHKGSNATKNV 291

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4138722|emb|CAA70777.1| hexose transporter [Vitis vinifera]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 71/89 (79%), Gaps = 3/89 (3%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           M FTF++AQ+FLNMLCH+KFGLFL FAFF++VMSFFIYFFLPETKGIPIEEM  VWK+HW
Sbjct: 434 MFFTFIIAQIFLNMLCHMKFGLFLSFAFFVVVMSFFIYFFLPETKGIPIEEMAEVWKSHW 493

Query: 61  FWSHYVGEDDFVPGGNVEMHKGSNATKNV 89
           FWS YV +  +     VE+ K +   KNV
Sbjct: 494 FWSRYVNDGSY---SGVELVKENYPVKNV 519

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523553|ref|XP_004168788.1| PREDICTED: sugar carrier protein C-like [Cucumis sativus]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 70/84 (83%), Gaps = 1/84 (1%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           M+FTF +AQVFL MLCH+KFGLF+FFAF++ VM+ FIYFFLPETKGIPIEEM +VWKTHW
Sbjct: 435 MIFTFAIAQVFLMMLCHMKFGLFIFFAFWVCVMTTFIYFFLPETKGIPIEEMSKVWKTHW 494

Query: 61  FWSHYVGEDDFVPGGNVEMHKGSN 84
           +WS +V +++F  G  +EM KG  
Sbjct: 495 YWSRFVTDNNFQIGA-LEMGKGGG 517

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|121495685|emb|CAM12257.1| hypothetical protein [Populus tremula x Populus tremuloides]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 75/89 (84%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           MLFTF++AQVFL MLCHLKFG+FLFFAFF+++MS FIY+FLPETKGIPIEEMG+VW THW
Sbjct: 433 MLFTFIIAQVFLTMLCHLKFGIFLFFAFFVVLMSIFIYYFLPETKGIPIEEMGQVWTTHW 492

Query: 61  FWSHYVGEDDFVPGGNVEMHKGSNATKNV 89
           FWS YV ++D+  GG  EM KG    K+V
Sbjct: 493 FWSRYVTDEDYPMGGGYEMTKGGQGPKSV 521

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433894|ref|XP_004134731.1| PREDICTED: sugar carrier protein C-like [Cucumis sativus]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 65/75 (86%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           M+FTF +AQVFL MLCH+KFGLF+FFAF++ VM+ FIYFFLPETKGIPIEEM +VWKTHW
Sbjct: 445 MIFTFAIAQVFLMMLCHMKFGLFIFFAFWVCVMTTFIYFFLPETKGIPIEEMSKVWKTHW 504

Query: 61  FWSHYVGEDDFVPGG 75
           +WS +V +++F  G 
Sbjct: 505 YWSRFVTDNNFQIGA 519

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114097|ref|XP_002316666.1| predicted protein [Populus trichocarpa] gi|222859731|gb|EEE97278.1| predicted protein [Populus trichocarpa]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 75/89 (84%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           MLFTF++AQVFL MLCHLKFG+FLFFAFF+++MS FIY+FLPETKGIPIEEMG+VW THW
Sbjct: 433 MLFTFIIAQVFLTMLCHLKFGIFLFFAFFVVLMSIFIYYFLPETKGIPIEEMGQVWTTHW 492

Query: 61  FWSHYVGEDDFVPGGNVEMHKGSNATKNV 89
           FWS +V ++D+  GG  EM KG    K+V
Sbjct: 493 FWSRFVTDEDYPKGGGYEMTKGGQGPKSV 521

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527119|ref|XP_004170560.1| PREDICTED: sugar transport protein 10-like [Cucumis sativus]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 63/81 (77%), Gaps = 1/81 (1%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           M FTF++AQVFL MLCH+KFGLF FFA F+L+M+ FIYFFLPETK +PIEEM RVWK HW
Sbjct: 433 MFFTFIIAQVFLAMLCHMKFGLFYFFAGFVLIMTVFIYFFLPETKNVPIEEMNRVWKAHW 492

Query: 61  FWSHYVGEDDFVPGGNVEMHK 81
           FW  Y+  D+ + GG V  H 
Sbjct: 493 FWGKYI-PDEVIIGGPVGKHD 512

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078842|ref|XP_002305649.1| predicted protein [Populus trichocarpa] gi|222848613|gb|EEE86160.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 75/89 (84%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           MLFTF+VAQ+FL MLCHLKFGLFLFFAFF+++MS F+Y+FLPETKGIPIEEMG+VWKTHW
Sbjct: 434 MLFTFIVAQIFLTMLCHLKFGLFLFFAFFVVLMSIFVYYFLPETKGIPIEEMGQVWKTHW 493

Query: 61  FWSHYVGEDDFVPGGNVEMHKGSNATKNV 89
           FWS YV ++D+   G  EM KG    KNV
Sbjct: 494 FWSRYVTDEDYPKAGGYEMTKGGQGPKNV 522

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57283538|emb|CAG27609.1| monosaccharide transporter [Populus tremula x Populus tremuloides]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 75/89 (84%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           MLFTF+VAQ+FL MLCHLKFGLFLFFAFF+++MS F+Y+FLPETKGIPIEEMG+VWKTHW
Sbjct: 434 MLFTFIVAQIFLTMLCHLKFGLFLFFAFFVVLMSIFVYYFLPETKGIPIEEMGQVWKTHW 493

Query: 61  FWSHYVGEDDFVPGGNVEMHKGSNATKNV 89
           FWS YV ++D+   G  EM KG    KNV
Sbjct: 494 FWSRYVTDEDYPKAGGYEMTKGGQGPKNV 522

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30349804|emb|CAD30830.1| monosaccharide-H+ symporter [Datisca glomerata]

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 61/89 (68%), Positives = 75/89 (84%)

Query: 1   MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60
           M+FTF +AQ+FL MLCHLKFGLF+FFAFF++VMS F+YFFLPETKGIPIEEMGRVWK+HW
Sbjct: 435 MIFTFAIAQIFLTMLCHLKFGLFIFFAFFVVVMSIFVYFFLPETKGIPIEEMGRVWKSHW 494

Query: 61  FWSHYVGEDDFVPGGNVEMHKGSNATKNV 89
           +WS +V + D+  G  VEM KG+   KN+
Sbjct: 495 YWSRFVTDADYTIGSGVEMGKGAQELKNI 523

Source: Datisca glomerata

Species: Datisca glomerata

Genus: Datisca

Family: Datiscaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
TAIR|locus:2202044	522	STP1 "AT1G11260" [Arabidopsis	0.925	0.166	0.472	1.2e-18
TAIR|locus:2092221	514	AT3G19940 [Arabidopsis thalian	0.787	0.143	0.527	1.8e-17
TAIR|locus:2011957	517	STP9 "sugar transporter 9" [Ar	0.797	0.145	0.506	1e-15
TAIR|locus:2092286	514	STP4 "sugar transporter 4" [Ar	0.872	0.159	0.481	1.6e-15
TAIR|locus:2166781	514	STP11 "sugar transporter 11" [	0.744	0.136	0.485	6.9e-14
TAIR|locus:2151074	526	MSS1 "AT5G26340" [Arabidopsis	0.787	0.140	0.448	6.7e-13
TAIR|locus:2132213	513	STP7 "sugar transporter protei	0.659	0.120	0.451	3.4e-11
TAIR|locus:2083003	507	STP6 "sugar transporter 6" [Ar	0.744	0.138	0.444	4.3e-11
TAIR|locus:2195995	504	STP14 "sugar transport protein	0.744	0.138	0.4	5.1e-10
TAIR|locus:2179734	507	AT5G26250 [Arabidopsis thalian	0.744	0.138	0.394	5.2e-10

TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 43/91 (47%), Positives = 58/91 (63%)

Query:     1 MLFTFLVAQVFLNMLCHXXXXXXXXXXXXXXXXXXXIYFFLPETKGIPIEEMGRVWKTHW 60
             M+FTF++AQ+FL MLCH                   +Y FLPETKGIPIEEMG+VW++HW
Sbjct:   434 MIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGIPIEEMGQVWRSHW 493

Query:    61 FWSHYVGEDDFVPGGNVEMHKGSN--ATKNV 89
             +WS +V + ++  G  +EM K SN   TK+V
Sbjct:   494 YWSRFVEDGEY--GNALEMGKNSNQAGTKHV 522

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IMP

GO:0015749 "monosaccharide transport" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 39/74 (52%), Positives = 43/74 (58%)

Query:     1 MLFTFLVAQVFLNMLCHXXXXXXXXXXXXXXXXXXXIYFFLPETKGIPIEEMGRVWKTHW 60
             M FTFL+ Q FL MLCH                   IYF LPETKG+PIEEMGRVWK HW
Sbjct:   434 MFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEMGRVWKQHW 493

Query:    61 FWSHYVGEDDFVPG 74
             FW  Y+ ED  + G
Sbjct:   494 FWKKYIPEDAIIGG 507

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 38/75 (50%), Positives = 43/75 (57%)

Query:     1 MLFTFLVAQVFLNMLCHXXXXXXXXXXXXXXXXXXXIYFFLPETKGIPIEEMGRVWKTHW 60
             M FTFL+ Q FL MLCH                   IYF LPETKG+PIEEMGRVWK H 
Sbjct:   435 MFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEMGRVWKQHP 494

Query:    61 FWSHYVGEDDFVPGG 75
             FW  Y+ +D  + GG
Sbjct:   495 FWKRYMPDDAVIGGG 509

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 40/83 (48%), Positives = 46/83 (55%)

Query:     1 MLFTFLVAQVFLNMLCHXXXXXXXXXXXXXXXXXXXIYFFLPETKGIPIEEMGRVWKTHW 60
             M FTFLVAQ+FL MLCH                   IY  LPETK +PIEEM RVWK HW
Sbjct:   432 MFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPETKNVPIEEMNRVWKAHW 491

Query:    61 FWSHYVGEDDFVPGGNVEMHKGS 83
             FW  ++  D+ V  G  EM + S
Sbjct:   492 FWGKFI-PDEAVNMGAAEMQQKS 513

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0008506 "sucrose:hydrogen symporter activity" evidence=IDA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IDA

GO:0015770 "sucrose transport" evidence=TAS

TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 6.9e-14, P = 6.9e-14
 Identities = 34/70 (48%), Positives = 38/70 (54%)

Query:     1 MLFTFLVAQVFLNMLCHXXXXXXXXXXXXXXXXXXXIYFFLPETKGIPIEEMGRVWKTHW 60
             M FTF + Q FL MLCH                   IYF LPETKG+PIEEMG+VWK H 
Sbjct:   435 MFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPETKGVPIEEMGKVWKEHR 494

Query:    61 FWSHYVGEDD 70
             +W  Y   DD
Sbjct:   495 YWGKYSNNDD 504

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 6.7e-13, P = 6.7e-13
 Identities = 35/78 (44%), Positives = 45/78 (57%)

Query:     1 MLFTFLVAQVFLNMLCHXXXXXXXXXXXXXXXXXXXIYFFLPETKGIPIEEMG-RVWKTH 59
             +LFTF++AQ FL+MLCH                   + F LPETK IPIEEM  RVWK H
Sbjct:   433 LLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKNIPIEEMTERVWKKH 492

Query:    60 WFWSHYV---GEDDFVPG 74
             WFW+ ++    + +FV G
Sbjct:   493 WFWARFMDDHNDHEFVNG 510

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005358 "high-affinity hydrogen:glucose symporter activity" evidence=IDA

GO:0009679 "hexose:hydrogen symporter activity" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IMP

GO:0015749 "monosaccharide transport" evidence=IMP

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.4e-11, P = 3.4e-11
 Identities = 28/62 (45%), Positives = 35/62 (56%)

Query:     1 MLFTFLVAQVFLNMLCHXXXXXXXXXXXXXXXXXXXIYFFLPETKGIPIEEMGRVWKTHW 60
             +LFTF++AQ FL +LC                    +YF LPETKG+PIEEM  +W  HW
Sbjct:   433 LLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMTLLWSKHW 492

Query:    61 FW 62
             FW
Sbjct:   493 FW 494

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2083003 STP6 "sugar transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 4.3e-11, P = 4.3e-11
 Identities = 32/72 (44%), Positives = 40/72 (55%)

Query:     1 MLFTFLVAQVFLNMLCHXXXXXXXXXXXXXXXXXXXIYFFLPETKGIPIEEMGR-VWKTH 59
             M FTF++AQ FL+MLC                     +FF+PETKGI I++M   VWK H
Sbjct:   427 MFFTFVIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFFFIPETKGIAIDDMRESVWKPH 486

Query:    60 WFWSHYV-GEDD 70
             WFW  Y+  EDD
Sbjct:   487 WFWKRYMLPEDD 498

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IDA

GO:0034219 "carbohydrate transmembrane transport" evidence=TAS

TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 28/70 (40%), Positives = 36/70 (51%)

Query:     1 MLFTFLVAQVFLNMLCHXXXXXXXXXXXXXXXXXXXIYFFLPETKGIPIEEMGRVWKTHW 60
             + FT L+AQ FL  LCH                   +YF LPETK +PIEE+  +W+ HW
Sbjct:   434 LFFTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYFLLPETKQVPIEEVYLLWRQHW 493

Query:    61 FWSHYVGEDD 70
              W  YV + D
Sbjct:   494 LWKKYVEDVD 503

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005354 "galactose transmembrane transporter activity" evidence=IGI

TAIR|locus:2179734 AT5G26250 [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 28/71 (39%), Positives = 39/71 (54%)

Query:     1 MLFTFLVAQVFLNMLCHXXXXXXXXXXXXXXXXXXXIYFFLPETKGIPIEEM-GRVWKTH 59
             M FTF++AQ FL+MLC                      FF+PETKG+ I++M   VWK H
Sbjct:   428 MFFTFVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALFFVPETKGVSIDDMRDSVWKLH 487

Query:    60 WFWSHYVGEDD 70
             W+W  ++ E+D
Sbjct:   488 WYWKRFMLEED 498

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	94
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-12
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	5e-10

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 2   LFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVW 56
           L  FL+  +F  +   +   +FL FA  +++   F++FF+PETKG  +EE+  ++
Sbjct: 395 LANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 53.9 bits (130), Expect = 5e-10
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 2   LFTFLVAQVFLNMLCHLKFG-LFLFFAFFMLVMSFFIYFFLPETKGIPIEEM 52
           L  F+V  +F  ML  +  G +F+FF    ++   F+YFFLPETKG  +EE+
Sbjct: 430 LANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
KOG0569	485	consensus Permease of the major facilitator superf	99.26
KOG0254	513	consensus Predicted transporter (major facilitator	98.84
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.82
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.41
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.34
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.63
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	96.97
PRK10489	417	enterobactin exporter EntS; Provisional	96.56
TIGR00898	505	2A0119 cation transport protein.	95.72
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	95.55
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	93.39
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	92.55
PRK09705	393	cynX putative cyanate transporter; Provisional	90.83
PRK10642	490	proline/glycine betaine transporter; Provisional	89.02
PRK11663	434	regulatory protein UhpC; Provisional	88.67
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	87.99
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	87.86
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	86.48
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	85.78
PRK15403	413	multidrug efflux system protein MdtM; Provisional	85.32
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	84.56
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	84.08
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	83.48
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	83.13
PRK15011	393	sugar efflux transporter B; Provisional	82.66
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	81.91

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.26  E-value=1.7e-11  Score=89.13  Aligned_cols=59  Identities=24%  Similarity=0.390  Sum_probs=56.7

Q ss_pred             CHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHhcC
Q 040031            1 MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTH   59 (94)
Q Consensus         1 W~~~~i~~~~~p~~~~~~g~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~~~~~~   59 (94)
                      |+++|++.++||++.+.+|..+|++|++.++++.+++|+++||||||+.+||.+.+++.
T Consensus       414 w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  414 WLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            89999999999999999999999999999999999999999999999999999988865

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.84  E-value=1.2e-08  Score=74.25  Aligned_cols=60  Identities=32%  Similarity=0.607  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH-HHHhhcccCCCCCHHHHHHHHhcCC
Q 040031            1 MLFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSF-FIYFFLPETKGIPIEEMGRVWKTHW   60 (94)
Q Consensus         1 W~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~-~~~~~~pEtkg~~le~i~~~~~~~~   60 (94)
                      |+.++++++.+|.+....+ .++|++|++++.+..+ ++++++|||||+++||+++.+....
T Consensus       441 ~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~  502 (513)
T KOG0254|consen  441 WLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGI  502 (513)
T ss_pred             HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCC
Confidence            7899999999999999988 8889999999998888 8999999999999999999887643

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.82  E-value=5.7e-10  Score=79.03  Aligned_cols=56  Identities=38%  Similarity=0.744  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHH
Q 040031            1 MLFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVW   56 (94)
Q Consensus         1 W~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~~~   56 (94)
                      |+++++.++++|++.+..+ ..+|++++++++++.+++++++|||||+++||++++|
T Consensus       395 ~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  395 RIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             cccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence            5677888899999999988 8999999999999999999999999999999999876

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.41  E-value=4.2e-07  Score=65.85  Aligned_cols=53  Identities=28%  Similarity=0.415  Sum_probs=43.3

Q ss_pred             CHHHHHHHHHHHHHHHh----------hh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHH
Q 040031            1 MLFTFLVAQVFLNMLCH----------LK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGR   54 (94)
Q Consensus         1 W~~~~i~~~~~p~~~~~----------~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~   54 (94)
                      |+++++.++++|++.+.          .| ..+|++++++++++.++ ++++|||+|+++|||++
T Consensus       438 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~  501 (502)
T TIGR00887       438 KAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSG  501 (502)
T ss_pred             hhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhC
Confidence            57888999999999873          34 46788999888887665 47889999999999875

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.34  E-value=2e-06  Score=61.38  Aligned_cols=60  Identities=25%  Similarity=0.490  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHH------Hhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHhcCCc
Q 040031            2 LFTFLVAQVFLNML------CHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHWF   61 (94)
Q Consensus         2 ~~~~i~~~~~p~~~------~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~~~~~~~~   61 (94)
                      +++++.++++|.+.      +..| ...|.++++++++++++.+++.||||++++||+++.+++..+
T Consensus       411 ~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  477 (479)
T PRK10077        411 IANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPETK  477 (479)
T ss_pred             HHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhccc
Confidence            56677778888665      3455 567888888888888888999999999999999999876543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.63  E-value=0.00011  Score=53.85  Aligned_cols=54  Identities=28%  Similarity=0.359  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHH-----hhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHH
Q 040031            2 LFTFLVAQVFLNMLC-----HLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVW   56 (94)
Q Consensus         2 ~~~~i~~~~~p~~~~-----~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~~~   56 (94)
                      +++.+..+.|.++.+     .+| ..+|++++++++++.++. +++|||||+++||+++..
T Consensus       453 ~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~leei~~e~  512 (538)
T KOG0252|consen  453 AGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGKSLEEISNEE  512 (538)
T ss_pred             chHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccccCHHHhcChh
Confidence            467788899999999     778 789999999999886654 556799999999995533

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=96.97  E-value=0.0013  Score=46.06  Aligned_cols=50  Identities=44%  Similarity=0.768  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 040031            2 LFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEE   51 (94)
Q Consensus         2 ~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~   51 (94)
                      +++++.+.+++.+.+..| ...|++++++++++.+..+++.||++++++++
T Consensus       430 lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~  480 (481)
T TIGR00879       430 LANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE  480 (481)
T ss_pred             HHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence            456677777777777777 46788888898998888889999999998765

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10489 enterobactin exporter EntS; Provisional

Probab=96.56  E-value=0.0031  Score=44.53  Aligned_cols=53  Identities=9%  Similarity=0.022  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHH
Q 040031            2 LFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGR   54 (94)
Q Consensus         2 ~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~   54 (94)
                      ++..+.+.+.+.+.+..| ...+.+++++.++..+..+..+|++|++++||+++
T Consensus       359 ~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (417)
T PRK10489        359 TGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV  412 (417)
T ss_pred             hhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence            355677788888888888 56777788887787788888999999999999876

>TIGR00898 2A0119 cation transport protein

Probab=95.72  E-value=0.021  Score=41.24  Aligned_cols=31  Identities=39%  Similarity=0.746  Sum_probs=22.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 040031           20 FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEE   51 (94)
Q Consensus        20 ~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~   51 (94)
                      ...+++++++.+++.+. .+++|||+|++++|
T Consensus       474 ~~~~~~~~~~~~~~~~~-~~~lpet~~~~l~~  504 (505)
T TIGR00898       474 FLPLVLFGGLALLAGIL-TLFLPETKGVPLPE  504 (505)
T ss_pred             hhHHHHHHHHHHHHHHH-HHcCcCCCCCCCCC
Confidence            56777777777766554 46789999998764

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=95.55  E-value=0.047  Score=42.37  Aligned_cols=47  Identities=19%  Similarity=0.211  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 040031            2 LFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPI   49 (94)
Q Consensus         2 ~~~~i~~~~~p~~~~~~g~~~f~i~~~~~~~~~~~~~~~~pEtkg~~l   49 (94)
                      +++++.+++.+.+.......+|++++++.+++.++ .+++|||+|+.|
T Consensus       695 lGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll-~~~LPET~~~~l  741 (742)
T TIGR01299       695 AAAVLGILIFGSFVGITKAAPILFASAALACGGLL-ALKLPDTRGQVL  741 (742)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHhCCCCccccc
Confidence            34555666666555432245667777766665554 446699999865

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=93.39  E-value=0.096  Score=38.38  Aligned_cols=45  Identities=18%  Similarity=0.256  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 040031            3 FTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPI   49 (94)
Q Consensus         3 ~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~l   49 (94)
                      ++++.+++.  |..... +.+-++|+++++++.+.+.++--|||||++
T Consensus       482 ggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  482 GGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             hhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            444444444  333333 567788999999999888888889999985

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=92.55  E-value=0.5  Score=27.21  Aligned_cols=42  Identities=29%  Similarity=0.375  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccC
Q 040031            3 FTFLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPET   44 (94)
Q Consensus         3 ~~~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEt   44 (94)
                      +..+.+.+.+.+.+..++ ..|.+.+.+.+++.+..+++.|||
T Consensus        99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        99 GPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            344455555555555564 677777878788777777777775

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=90.83  E-value=1.1  Score=31.56  Aligned_cols=46  Identities=11%  Similarity=-0.052  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 040031            4 TFLVAQVFLNMLCHLK--FGLFLFFAFFMLVMSFFIYFFLPETKGIPI   49 (94)
Q Consensus         4 ~~i~~~~~p~~~~~~g--~~~f~i~~~~~~~~~~~~~~~~pEtkg~~l   49 (94)
                      ..+.+.+..++.+..|  ...|.+.++++++..+..+.+.|||+.+-.
T Consensus       342 ~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        342 AGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence            4455666667777777  355666677777777788899999987654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=89.02  E-value=0.99  Score=32.86  Aligned_cols=46  Identities=9%  Similarity=0.049  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 040031            4 TFLVAQVFLNMLCHLK--FGLFLFFAFFMLVMSFFIYFFLPETKGIPIE   50 (94)
Q Consensus         4 ~~i~~~~~p~~~~~~g--~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le   50 (94)
                      +.+.+++..++.+..+  ...+++.+.+++++.+ ..+++|||++..++
T Consensus       391 g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~-~~~~~pes~~~~~~  438 (490)
T PRK10642        391 AGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI-TGVTMKETANRPLK  438 (490)
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HHHHhccccCCCCC
Confidence            4445555555555444  2333444444444444 44567999887654

>PRK11663 regulatory protein UhpC; Provisional

Probab=88.67  E-value=0.68  Score=33.08  Aligned_cols=46  Identities=15%  Similarity=0.158  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 040031            2 LFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGI   47 (94)
Q Consensus         2 ~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~   47 (94)
                      +++++.+.++..+.+..| ..+|.+.+++++++.+..+.+.++.+++
T Consensus       384 ~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  430 (434)
T PRK11663        384 LGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR  430 (434)
T ss_pred             HHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            345566677777888778 5778888888888777777777666554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=87.99  E-value=2  Score=30.31  Aligned_cols=43  Identities=12%  Similarity=-0.012  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031            3 FTFLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETK   45 (94)
Q Consensus         3 ~~~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk   45 (94)
                      +..+...+-+.+....|| ..|++.+++.++..+..++++||..
T Consensus       126 G~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       126 GIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            344555556666666785 6777778888888888888999864

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=87.86  E-value=3.1  Score=30.45  Aligned_cols=45  Identities=11%  Similarity=0.197  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031            2 LFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKG   46 (94)
Q Consensus         2 ~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg   46 (94)
                      ++.++.+.....+.+.+| ..+|++.+++.+...++.++.++..+.
T Consensus       360 ~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  360 IGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            456788889999999999 679999999988888888777766544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00889 2A0110 nucleoside transporter

Probab=86.48  E-value=3.1  Score=29.75  Aligned_cols=45  Identities=16%  Similarity=0.292  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHhhh------h-HHHHHHHHHHHHHHHHHHhhcccCCCC
Q 040031            3 FTFLVAQVFLNMLCHLK------F-GLFLFFAFFMLVMSFFIYFFLPETKGI   47 (94)
Q Consensus         3 ~~~i~~~~~p~~~~~~g------~-~~f~i~~~~~~~~~~~~~~~~pEtkg~   47 (94)
                      +..+.+.+...+.+..|      + ..|.+.+++.+++.+..+++++|+++.
T Consensus       357 g~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       357 GSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            44566677777777643      2 567778888888888888888887544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=85.78  E-value=2.6  Score=30.83  Aligned_cols=26  Identities=35%  Similarity=0.796  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCHHH
Q 040031           26 FAFFMLVMSFFIYFFLPETKGIPIEE   51 (94)
Q Consensus        26 ~~~~~~~~~~~~~~~~pEtkg~~le~   51 (94)
                      ++.+..+..+...+++|||+++.+.+
T Consensus       477 ~~~~~~l~~~~~~~~lpet~~~~l~~  502 (521)
T KOG0255|consen  477 FGWLALLLGLLSLLLLPETKGKPLPG  502 (521)
T ss_pred             HHHHHHHHHHHHHhcCcccCCCCCch
Confidence            56677777777779999999999855

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=85.32  E-value=4.5  Score=28.83  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=24.4

Q ss_pred             HHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031           11 FLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKG   46 (94)
Q Consensus        11 ~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg   46 (94)
                      -..+.+..|| ..|++.+++.++..+..++++|||+.
T Consensus       160 g~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        160 GAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            3334445564 67878887777777766778899754

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=84.56  E-value=4.4  Score=28.41  Aligned_cols=35  Identities=29%  Similarity=0.559  Sum_probs=24.1

Q ss_pred             HHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031           12 LNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKG   46 (94)
Q Consensus        12 p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg   46 (94)
                      ..+.+..|+ ..|++.+++++++.+..++..||++.
T Consensus       158 ~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        158 AALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            334444563 67777888877777777778898764

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=84.08  E-value=5.9  Score=27.13  Aligned_cols=43  Identities=26%  Similarity=0.447  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCCC
Q 040031            5 FLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKGI   47 (94)
Q Consensus         5 ~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg~   47 (94)
                      .+.+.+...+.+..|+ ..|++.+++.++..+..+++.||++.+
T Consensus       143 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       143 AVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY  186 (385)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            3444555555566674 667777777777777777778887543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=83.48  E-value=6.1  Score=27.16  Aligned_cols=41  Identities=22%  Similarity=0.493  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031            5 FLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETK   45 (94)
Q Consensus         5 ~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk   45 (94)
                      .+.+.+...+.+..|+ ..|++.+.++++..+..++++||++
T Consensus       129 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        129 LLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            3444444555555674 6777777777777777777888864

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=83.13  E-value=2.7  Score=30.04  Aligned_cols=40  Identities=8%  Similarity=0.030  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCC
Q 040031            6 LVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETK   45 (94)
Q Consensus         6 i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtk   45 (94)
                      +.+.+.+.+.+..| ..+|.+.+++++++.+...+.+||.|
T Consensus       397 ~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       397 AASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             hcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            45567777778777 57777888888888888889999865

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15011 sugar efflux transporter B; Provisional

Probab=82.66  E-value=6.1  Score=27.75  Aligned_cols=42  Identities=17%  Similarity=0.390  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031            5 FLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKG   46 (94)
Q Consensus         5 ~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg   46 (94)
                      .+.+.+...+.+..|+ ..|.+.+..+++..+.+++++||.+.
T Consensus       157 ~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  199 (393)
T PRK15011        157 VIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK  199 (393)
T ss_pred             HHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence            3334444444456674 56777777777777777888888643

>TIGR00899 2A0120 sugar efflux transporter

Probab=81.91  E-value=6.6  Score=26.82  Aligned_cols=36  Identities=19%  Similarity=0.417  Sum_probs=24.0

Q ss_pred             HHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031           10 VFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETK   45 (94)
Q Consensus        10 ~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk   45 (94)
                      +...+.+..|+ ..|++.+.++++..+..++++||.+
T Consensus       144 ~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       144 LAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            33344455664 6778888777777777777788854

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	94
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.35
2cfq_A	417	Lactose permease; transport, transport mechanism,	93.55
2xut_A	524	Proton/peptide symporter family protein; transport	86.69
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	83.04

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.35  E-value=9.2e-13  Score=92.17  Aligned_cols=60  Identities=23%  Similarity=0.456  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHHHHHHh------hh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHhcCC
Q 040031            1 MLFTFLVAQVFLNMLCH------LK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW   60 (94)
Q Consensus         1 W~~~~i~~~~~p~~~~~------~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~~~~~~~   60 (94)
                      |++++++++++|.+.+.      .+ ..+|++++++++++.+++++++||||||+|||||++|+++.
T Consensus       416 ~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~  482 (491)
T 4gc0_A          416 WLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET  482 (491)
T ss_dssp             HHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence            57788899999988653      23 46789999999999999999999999999999999998654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=93.55  E-value=0.093  Score=35.95  Aligned_cols=48  Identities=17%  Similarity=0.270  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 040031            2 LFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPI   49 (94)
Q Consensus         2 ~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~l   49 (94)
                      +++++.+.+.+.+.+..| ...|.+.+++++++.+..++..||++..++
T Consensus       360 lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~  408 (417)
T 2cfq_A          360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             HHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred             HHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence            456677777787787777 567888888888888777788888766553

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=86.69  E-value=0.46  Score=33.09  Aligned_cols=50  Identities=10%  Similarity=0.077  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHh----------hh--hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 040031            2 LFTFLVAQVFLNMLCH----------LK--FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEE   51 (94)
Q Consensus         2 ~~~~i~~~~~p~~~~~----------~g--~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~   51 (94)
                      +++++.+.+.+.+.+.          .+  ...|++++++++++.+..+++.+++++++.++
T Consensus       452 ~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (524)
T 2xut_A          452 VGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYR  513 (524)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             HHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence            3455666666655542          11  12377888888888888888888887766544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=83.04  E-value=0.51  Score=32.52  Aligned_cols=45  Identities=18%  Similarity=0.298  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 040031            4 TFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIP   48 (94)
Q Consensus         4 ~~i~~~~~p~~~~~~g~~~f~i~~~~~~~~~~~~~~~~pEtkg~~   48 (94)
                      +++.+.+.+.+.+......|.+++++++++.+..+++.++++++.
T Consensus       435 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (491)
T 4aps_A          435 SALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM  479 (491)
T ss_dssp             HHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444433333222256788888888888888888888876553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	95.49
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	83.0

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.045  Score=34.28  Aligned_cols=50  Identities=16%  Similarity=0.243  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 040031            2 LFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEE   51 (94)
Q Consensus         2 ~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~   51 (94)
                      ++.++.+.+...+.+..| ..+|+++++++++..++.++.+++++..++++
T Consensus       360 ~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r  410 (417)
T d1pv7a_         360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence            345677788888888888 57888999998888888888898888888755

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=83.00  E-value=0.16  Score=32.46  Aligned_cols=37  Identities=5%  Similarity=0.015  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhccc
Q 040031            7 VAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPE   43 (94)
Q Consensus         7 ~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pE   43 (94)
                      .+.+...+.+..| ...|++++++++++.++.+++.++
T Consensus       396 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         396 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             HHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455566667777 466777777777777766665544