Citrus Sinensis ID: 040042

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
MVLHMLSLSSCSFTKLLHRNQISLGLPRSCHFTPFQVQCLGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFDDWKGILSMYEAAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFIDAYESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPYYLKFCFLALHNFIMKLLLTLSKKKKLTSFVILKK
ccccccccccccHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
ccEEEEEcccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccEEHcccc
mvlhmlslsscsftKLLHRnqislglprschftpfqvqCLGKSYAKRIEELKADVRAMLDKAvvmdplhqFELRDALQRLGVSYHFGDEIKKLRNAIYRnnnlqkqeSLYDVALEFRLLRqhgydtattASIQLKFFDDWKGILSMYEAAYLLVEGENIFYEIRNFTTTYLKEYikhnkdpyILTLVNHALELPLHWRMQRMETRWFIdayesgpdINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENFLWTvgvtsepqfgyfrrMSTKVSALITSIDDAYDVYGTLDELKLFTNSVerwdvsamdqhpyYLKFCFLALHNFIMKLLLTLSKKKKLTSFVILKK
MVLHMLSLSSCSFTKLLHRNQISLGLPRSCHFTPFQVQCLGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFDDWKGILSMYEAAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFIDAYESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPYYLKFCFLALHNFIMKLLLtlskkkkltsfvilkk
MVLHMLSLSSCSFTKLLHRNQISLGLPRSCHFTPFQVQCLGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFDDWKGILSMYEAAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFIDAYESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPYYLKFCFLALHNFIMkllltlskkkkltsFVILKK
****MLSLSSCSFTKLLHRNQISLGLPRSCHFTPFQVQCLGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFDDWKGILSMYEAAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFIDAYESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPYYLKFCFLALHNFIMKLLLT***************
******************************HFT**************IEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFDDWKGILSMYEAAYLLVEGENIFYEIRNFTTTYLK************TLVNHALELPLHWRMQRMETRWFIDAYESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPYYLKFCFLALHNFIMKLLLTLSKKKKLT**VILKK
MVLHMLSLSSCSFTKLLHRNQISLGLPRSCHFTPFQVQCLGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFDDWKGILSMYEAAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFIDAYESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPYYLKFCFLALHNFIMKLLLTLSKKKKLTSFVILKK
MVLHMLSLSSCSFTKLLHRNQISLGLPRSCHFTPFQVQCLGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFDDWKGILSMYEAAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFIDAYESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPYYLKFCFLALHNFIMKLLLTLSKKKKLTSFVILKK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
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MVLHMLSLSSCSFTKLLHRNQISLGLPRSCHFTPFQVQCLGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFDDWKGILSMYEAAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFIDAYESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPYYLKFCFLALHNFIMKLLLTLSKKKKLTSFVILKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query363 2.2.26 [Sep-21-2011]
Q8L5K4 600 Gamma-terpinene synthase, N/A no 0.829 0.501 0.573 1e-100
Q93X23 597 Myrcene synthase, chlorop N/A no 0.925 0.562 0.505 5e-99
Q6PWU2 590 (-)-alpha-terpineol synth no no 0.823 0.506 0.565 1e-97
B3TPQ7 592 Alpha-terpineol synthase, N/A no 0.876 0.537 0.484 3e-82
Q6EJ97 608 Isoprene synthase, chloro N/A no 0.867 0.518 0.451 7e-76
A7IZZ2 615 (+)-alpha-pinene synthase N/A no 0.826 0.487 0.481 1e-74
Q2XSC4 538 Exo-alpha-bergamotene syn N/A no 0.884 0.596 0.424 3e-74
P0DI77 600 1,8-cineole synthase 2, c yes no 0.859 0.52 0.458 3e-74
P0DI76 600 1,8-cineole synthase 1, c yes no 0.859 0.52 0.458 3e-74
Q8L5K3 606 (R)-limonene synthase 1 O N/A no 0.820 0.491 0.484 6e-74
>sp|Q8L5K4|GTPS_CITLI Gamma-terpinene synthase, chloroplastic OS=Citrus limon PE=1 SV=1 Back     alignment and function desciption
 Score =  363 bits (933), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/326 (57%), Positives = 236/326 (72%), Gaps = 25/326 (7%)

Query: 41  GKSYAKRIEELKADVRAML---DKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAI 97
           G+SYA+++E+LK  V AML   +K V +DPLHQ EL D L RLGVSYHF DEIK+  + I
Sbjct: 80  GESYARQLEKLKEQVSAMLQQDNKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRI 139

Query: 98  YRNNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFDD------------WKGILS 145
           +  N     +SLY  AL+FR+LRQ+GY T    +   +F D+             KG+L+
Sbjct: 140 HNKNT---NKSLYARALKFRILRQYGYKTPVKETFS-RFMDEKGSFKLSSHSDECKGMLA 195

Query: 146 MYEAAYLLVEGEN-IFYEIRNFTTTYLKEYI-KH----NKDPYILTLVNHALELPLHWRM 199
           +YEAAYLLVE E+ IF +   FTT YLKE++ KH    N + Y+ TLV HALELPLHWRM
Sbjct: 196 LYEAAYLLVEEESSIFRDAIRFTTAYLKEWVAKHDIDKNDNEYLCTLVKHALELPLHWRM 255

Query: 200 QRMETRWFIDAYESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFA 259
           +R+E RWFID YESGPD+N +LLELAK+D+N+VQA HQEDL+ VS WW+  G G KLNFA
Sbjct: 256 RRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAVHQEDLKYVSRWWKKTGLGEKLNFA 315

Query: 260 RDRLMENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERW 319
           RDR++ENF WTVG   EPQFGY RRMS  V+ L+TSIDD YDVYGTLDEL+LFT++VERW
Sbjct: 316 RDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERW 375

Query: 320 DVSAMDQHPYYLKFCFLALHNFIMKL 345
           D +  +Q PYY+K CF AL+N + ++
Sbjct: 376 DATTTEQLPYYMKLCFHALYNSVNEM 401
Monoterpene synthase which catalyzes the conversion of geranyl diphosphate to gamma-terpinene and the minor products limonene, alpha-pinene, beta-pinene, alpha-terpinolene, alpha-thujene, alpha-terpinene, myrcene and sabinene.
Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 1EC: 1EC: 4
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1 Back     alignment and function description
>sp|Q6EJ97|ISPS_PUEML Isoprene synthase, chloroplastic OS=Pueraria montana var. lobata GN=ISPS PE=1 SV=1 Back     alignment and function description
>sp|A7IZZ2|TPS2_CANSA (+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q2XSC4|LABER_LAVAN Exo-alpha-bergamotene synthase OS=Lavandula angustifolia PE=1 SV=1 Back     alignment and function description
>sp|P0DI77|CIN2_ARATH 1,8-cineole synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS23 PE=1 SV=1 Back     alignment and function description
>sp|P0DI76|CIN1_ARATH 1,8-cineole synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1 Back     alignment and function description
>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
255585314 551 (R)-limonene synthase, putative [Ricinus 0.920 0.606 0.536 1e-100
61161981 602 monoterpene synthase [Citrus unshiu] 0.826 0.498 0.584 1e-100
49659441 600 gamma-terpinene synthase [Citrus unshiu] 0.831 0.503 0.584 1e-100
350284792 551 sesquiterpene synthase [Ricinus communis 0.920 0.606 0.533 2e-99
152962686 602 beta-pinene synthase [Citrus jambhiri] 0.829 0.5 0.579 2e-99
322424199 602 pinene synthase [Citrus hystrix] 0.829 0.5 0.573 1e-98
218117805 595 +limonene synthase [Toona sinensis] 0.887 0.541 0.553 1e-98
392306392 595 +limonene synthase [Toona sinensis] 0.887 0.541 0.553 1e-98
49659443 602 beta-pinene synthase [Citrus unshiu] 0.829 0.5 0.567 1e-98
75245637 600 RecName: Full=Gamma-terpinene synthase, 0.829 0.501 0.573 6e-98
>gi|255585314|ref|XP_002533355.1| (R)-limonene synthase, putative [Ricinus communis] gi|223526807|gb|EEF29028.1| (R)-limonene synthase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/358 (53%), Positives = 248/358 (69%), Gaps = 24/358 (6%)

Query: 28  RSCHFTP----------FQVQCLGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDAL 77
           RS ++ P           + + +G+   KRI++LK DV+ ML+K   M P  QFEL D L
Sbjct: 14  RSANYRPPIWDFDFVQSLKSEFVGELNIKRIDKLKEDVKMMLNKT--MAPSDQFELIDTL 71

Query: 78  QRLGVSYHFGDEIKKLRNAIY---RNNNLQKQESLYDVALEFRLLRQHGYDTATT----- 129
           QRLG++YHFGDEIK++  +IY   RN+N   +E L+ +AL+FRLLRQHGY+ +       
Sbjct: 72  QRLGLAYHFGDEIKRIVKSIYNSHRNDNTWMKEDLHTIALQFRLLRQHGYNISQEIFDIF 131

Query: 130 ----ASIQLKFFDDWKGILSMYEAAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILT 185
                + +    +D +G+LS+YEA+YLL EGENI    R F  + LK+YI+ NKD  +  
Sbjct: 132 RDELGNFKECLHEDIEGMLSLYEASYLLEEGENILEVAREFAASCLKKYIQVNKDQLLSM 191

Query: 186 LVNHALELPLHWRMQRMETRWFIDAYESGPDINHVLLELAKLDFNMVQAKHQEDLESVSE 245
           +V+H+LE+PLHWRM R+ETRWFID YE    +N +LLELAKLDFN VQA + EDL+ V+ 
Sbjct: 192 IVSHSLEVPLHWRMPRLETRWFIDIYEKKQGMNPLLLELAKLDFNNVQATYHEDLKYVTS 251

Query: 246 WWEYVGFGNKLNFARDRLMENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGT 305
           WW   G G KL+FARDRLMENFLWTVGV   PQFGYFRR+STKV++LIT IDD YDVYGT
Sbjct: 252 WWRNTGLGEKLSFARDRLMENFLWTVGVNFPPQFGYFRRISTKVNSLITVIDDIYDVYGT 311

Query: 306 LDELKLFTNSVERWDVSAMDQHPYYLKFCFLALHNFIMKLLLTLSKKKKLTSFVILKK 363
           LDEL+LFTN+VERWDV+AMDQ P Y+K CFLALHN I ++     +++       LKK
Sbjct: 312 LDELQLFTNAVERWDVNAMDQLPEYMKLCFLALHNSINEMAYDALREQGFHIIPYLKK 369

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|61161981|dbj|BAD91045.1| monoterpene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|49659441|dbj|BAD27259.1| gamma-terpinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|350284792|gb|AEQ27769.1| sesquiterpene synthase [Ricinus communis] Back     alignment and taxonomy information
>gi|152962686|dbj|BAF73933.1| beta-pinene synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|322424199|gb|ADX01381.1| pinene synthase [Citrus hystrix] Back     alignment and taxonomy information
>gi|218117805|dbj|BAH03282.1| +limonene synthase [Toona sinensis] Back     alignment and taxonomy information
>gi|392306392|dbj|BAM24404.1| +limonene synthase [Toona sinensis] Back     alignment and taxonomy information
>gi|49659443|dbj|BAD27260.1| beta-pinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|75245637|sp|Q8L5K4.1|GTPS_CITLI RecName: Full=Gamma-terpinene synthase, chloroplastic; Short=ClgammaTS; Flags: Precursor gi|21435701|gb|AAM53943.1|AF514286_1 gamma-terpinene synthase [Citrus limon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
UNIPROTKB|Q8L5K4 600 Q8L5K4 "Gamma-terpinene syntha 0.776 0.47 0.557 1.2e-81
UNIPROTKB|B3TPQ7 592 B3TPQ7 "Alpha-terpineol syntha 0.818 0.501 0.508 1.1e-76
UNIPROTKB|J7LQ09 542 J7LQ09 "Trans-alpha-bergamoten 0.818 0.547 0.448 1.6e-70
TAIR|locus:2829283 600 TPS-CIN ""terpene synthase-lik 0.801 0.485 0.470 2.4e-69
TAIR|locus:2086014 600 TPS-CIN ""terpene synthase-lik 0.801 0.485 0.470 2.4e-69
UNIPROTKB|J7LH11 546 J7LH11 "(+)-epi-alpha-bisabolo 0.823 0.547 0.449 8e-69
UNIPROTKB|Q8H2B4 606 Q8H2B4 "R-linalool synthase, c 0.812 0.486 0.439 4e-67
UNIPROTKB|Q8GUE4 603 GerS "Geraniol synthase, chlor 0.834 0.502 0.448 5.1e-67
TAIR|locus:2129101 565 TPS03 "terpene synthase 03" [A 0.812 0.522 0.479 1.3e-66
TAIR|locus:2047510 591 TPS10 "terpene synthase 10" [A 0.809 0.497 0.439 1.2e-65
UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)] Back     alignment and assigned GO terms
 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 166/298 (55%), Positives = 212/298 (71%)

Query:    60 DKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNN---NLQKQESLYDVALEF 116
             +K V +DPLHQ EL D L RLGVSYHF DEIK+  + I+  N   +L  +   + +  ++
Sbjct:   102 NKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNKSLYARALKFRILRQY 161

Query:   117 RLLRQHGYDTATT-----ASIQLKFF-DDWKGILSMYEAAYLLVEGEN-IFYEIRNFTTT 169
                +    +T +       S +L    D+ KG+L++YEAAYLLVE E+ IF +   FTT 
Sbjct:   162 GY-KTPVKETFSRFMDEKGSFKLSSHSDECKGMLALYEAAYLLVEEESSIFRDAIRFTTA 220

Query:   170 YLKEYI-KH----NKDPYILTLVNHALELPLHWRMQRMETRWFIDAYESGPDINHVLLEL 224
             YLKE++ KH    N + Y+ TLV HALELPLHWRM+R+E RWFID YESGPD+N +LLEL
Sbjct:   221 YLKEWVAKHDIDKNDNEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLEL 280

Query:   225 AKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENFLWTVGVTSEPQFGYFRR 284
             AK+D+N+VQA HQEDL+ VS WW+  G G KLNFARDR++ENF WTVG   EPQFGY RR
Sbjct:   281 AKVDYNIVQAVHQEDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRR 340

Query:   285 MSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPYYLKFCFLALHNFI 342
             MS  V+ L+TSIDD YDVYGTLDEL+LFT++VERWD +  +Q PYY+K CF AL+N +
Sbjct:   341 MSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATTTEQLPYYMKLCFHALYNSV 398
GO:0000287 "magnesium ion binding" evidence=IDA
GO:0010333 "terpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
TAIR|locus:2829283 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086014 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q8H2B4 Q8H2B4 "R-linalool synthase, chloroplastic" [Mentha aquatica (taxid:190902)] Back     alignment and assigned GO terms
UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)] Back     alignment and assigned GO terms
TAIR|locus:2129101 TPS03 "terpene synthase 03" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047510 TPS10 "terpene synthase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
cd00684 542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-122
pfam03936 270 pfam03936, Terpene_synth_C, Terpene synthase famil 2e-46
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 2e-43
cd00868 284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 2e-37
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 2e-26
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 4e-24
cd00385 243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 1e-04
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  361 bits (930), Expect = e-122
 Identities = 153/337 (45%), Positives = 209/337 (62%), Gaps = 19/337 (5%)

Query: 44  YAKRIEELKADVRAMLDKAVV-MDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNNN 102
             + IEELK +VR ML+ +   +D   +  L D LQRLG+SYHF DEIK++ + IYR   
Sbjct: 29  LEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWT 88

Query: 103 LQKQE---SLYDVALEFRLLRQHGYDTATTASI-------QLKFF----DDWKGILSMYE 148
            + +     LY  AL FRLLRQHGY+   ++ +         KF      D KG+LS+YE
Sbjct: 89  ERGESNEDDLYTTALGFRLLRQHGYNV--SSDVFKKFKDEDGKFKESLTQDVKGMLSLYE 146

Query: 149 AAYLLVEGENIFYEIRNFTTTYLKEYIKHN--KDPYILTLVNHALELPLHWRMQRMETRW 206
           A++L   GE+I  E  +FTT +L+E ++ N   DP +   + +ALE+PLH  + R+E RW
Sbjct: 147 ASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARW 206

Query: 207 FIDAYESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMEN 266
           +I+ YE   D N  LLELAKLDFN++QA HQE+L+ +S WW+ +   +KL FARDRL+E 
Sbjct: 207 YIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVEC 266

Query: 267 FLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQ 326
           + W  G   EPQ+   R    K  ALIT IDD YDVYGTL+EL+LFT +VERWD+SA+DQ
Sbjct: 267 YFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQ 326

Query: 327 HPYYLKFCFLALHNFIMKLLLTLSKKKKLTSFVILKK 363
            P Y+K  F AL N + ++   L K+        LK+
Sbjct: 327 LPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKE 363

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 363
cd00684 542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279 784 ent-kaur-16-ene synthase 100.0
PLN02592 800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936 270 Terpene_synth_C: Terpene synthase family, metal bi 99.88
cd00868 284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 99.79
cd00687 303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 98.13
cd00385 243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 96.41
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=1.4e-106  Score=840.57  Aligned_cols=335  Identities=47%  Similarity=0.746  Sum_probs=315.2

Q ss_pred             CCCCCCCC----C-ccccc-----hH-HHHHHHHHHHHHHHHHHhhc-ccCCccchhhHHHHHHhhCCccchHHHHHHHH
Q 040042           27 PRSCHFTP----F-QVQCL-----GK-SYAKRIEELKADVRAMLDKA-VVMDPLHQFELRDALQRLGVSYHFGDEIKKLR   94 (363)
Q Consensus        27 r~~a~~~p----~-f~~~~-----~~-~~~~~~~~Lk~~Vk~~l~~~-~~~d~~~~L~lID~LqRLGI~~hFe~EI~~~L   94 (363)
                      |++++|+|    + ++++.     +. .+.+++++||++||+|+... .|.|++++|++||+||||||+|||++||+++|
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L   80 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEIL   80 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Confidence            78899999    3 55542     22 67899999999999999763 12899999999999999999999999999999


Q ss_pred             HHHHhhCccc---CCCChhHHHHHHHhhhhcCCccccccccccccc-----------cchHHHHHHHHhhcCCCCCchHH
Q 040042           95 NAIYRNNNLQ---KQESLYDVALEFRLLRQHGYDTATTASIQLKFF-----------DDWKGILSMYEAAYLLVEGENIF  160 (363)
Q Consensus        95 ~~iy~~~~~~---~~~DL~~~AL~FRLLR~hGy~VSs~~DvF~~F~-----------~dv~glLsLYeAS~l~~~gE~iL  160 (363)
                      +++|++|...   ...||++|||+|||||||||+|||  |||++|+           +||+||||||||||+++|||+||
T Consensus        81 ~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~--dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iL  158 (542)
T cd00684          81 DYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSS--DVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDIL  158 (542)
T ss_pred             HHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCH--HHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHH
Confidence            9999987521   247999999999999999999999  9999999           59999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcC--CCchHHHHHHHhccCcccccchhhHHHHHHHHhcCCCCCcHHHHHHHHhhhHHHHHhhHH
Q 040042          161 YEIRNFTTTYLKEYIKHN--KDPYILTLVNHALELPLHWRMQRMETRWFIDAYESGPDINHVLLELAKLDFNMVQAKHQE  238 (363)
Q Consensus       161 deA~~Ft~~~L~~~~~~~--~~~~L~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFn~~Q~~hq~  238 (363)
                      |||++||++||++.++++  ++++|+++|+|||++|||+++||+|||+||++|++++++|++||||||+|||+||++||+
T Consensus       159 deA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~  238 (542)
T cd00684         159 DEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQE  238 (542)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHH
Confidence            999999999999999643  788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCCccccchhhHHHHHHhhcccCCCchhhhHhHHhHHHHHhhhhhhhcccCCHHHHHHHHHHhhh
Q 040042          239 DLESVSEWWEYVGFGNKLNFARDRLMENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVER  318 (363)
Q Consensus       239 EL~~lsrWw~~~~l~~~L~faRdr~ve~yfwa~~~~fEP~~s~~Ri~~aK~~~litviDD~yD~yGtleEl~~ft~aveR  318 (363)
                      ||++++|||+++||.++|||+|+|++|||||++|++|||++|.+|+++||++++++++||+||+|||+|||+.||+||+|
T Consensus       239 El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~r  318 (542)
T cd00684         239 ELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVER  318 (542)
T ss_pred             HHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHh
Confidence            99999999999999988899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCChHHHHHHHHHHHHHHHHHHHHHhccCCccchhccC
Q 040042          319 WDVSAMDQHPYYLKFCFLALHNFIMKLLLTLSKKKKLTSFVILKK  363 (363)
Q Consensus       319 WD~~~~~~Lpeymk~~f~aL~~~~~ei~~~~~~~~g~~~~~~lk~  363 (363)
                      ||+++++++|+|||+||.+|+++++|+++++.+.+|+++++|+++
T Consensus       319 wd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~  363 (542)
T cd00684         319 WDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKE  363 (542)
T ss_pred             ccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence            999999999999999999999999999999999999998888763

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
2j5c_A 569 Rational Conversion Of Substrate And Product Specif 3e-71
3n0f_A 555 Crystal Structure Of Isoprene Synthase From Grey Po 1e-70
1n1b_A 549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 1e-68
2ong_A 543 Crystal Structure Of Of Limonene Synthase With 2- F 1e-65
3g4d_A 554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 3e-55
3lz9_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-54
3m01_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 4e-54
4di5_A 535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 4e-54
5eau_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 5e-54
1hxc_A 548 Crystal Structure Of Teas C440w Length = 548 6e-54
5eas_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-53
5eat_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 4e-53
1hx9_A 548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-52
1hxg_A 548 Crystal Structure Of Teas W273sC440W Length = 548 2e-52
3s9v_A 785 Abietadiene Synthase From Abies Grandis Length = 78 3e-40
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 2e-39
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 7e-34
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 1e-17
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure 
Iteration: 1

 Score =  265 bits (678), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 132/298 (44%), Positives = 190/298 (63%), Gaps = 12/298 (4%)
Query: 55  VRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNNNLQKQESLYDVAL 114
           V+ ML + V  D + + EL D L+RLG+S HF  EI ++ N+ Y  NN   +  LY  AL
Sbjct: 73  VKMMLQEEV--DSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTAL 130
Query: 115 EFRLLRQHGYDT----------ATTASIQLKFFDDWKGILSMYEAAYLLVEGENIFYEIR 164
            FRLLRQ+ +            A     +    DD +G+L +YEA++L  +GE      R
Sbjct: 131 RFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLAR 190
Query: 165 NFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFIDAYESGPDINHVLLEL 224
           +F T +L++ +  +KD  +L+ +  ALELP HWR+Q    R FIDAY+  PD+N  +LEL
Sbjct: 191 DFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLEL 250
Query: 225 AKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENFLWTVGVTSEPQFGYFRR 284
           AKLDFNMVQA+ Q++L+  S WW   G  ++L F RDR++E + WT GV    Q GY R 
Sbjct: 251 AKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERI 310
Query: 285 MSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPYYLKFCFLALHNFI 342
           M TK++AL+T+IDD +D+YGTL+EL+LFT +++RWD+ +M Q P Y++ C+LAL NF+
Sbjct: 311 MLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFV 368
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 4e-92
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 1e-86
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 3e-85
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 3e-84
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 2e-83
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 5e-82
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 3e-71
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 4e-69
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 7e-67
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 2e-66
1ps1_A 337 Pentalenene synthase; antibiotic biosynthesis, ses 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
 Score =  285 bits (731), Expect = 4e-92
 Identities = 132/315 (41%), Positives = 195/315 (61%), Gaps = 12/315 (3%)

Query: 38  QCLGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAI 97
           +   + +  R   +   V+ ML +   +D + + EL D L+RLG+S HF  EI ++ N+ 
Sbjct: 56  EYKEEKHLMRAAGMIDQVKMMLQEE--VDSIRRLELIDDLRRLGISCHFEREIVEILNSK 113

Query: 98  YRNNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLK----------FFDDWKGILSMY 147
           Y  NN   +  LY  AL FRLLRQ+ +  +       K            DD +G+L +Y
Sbjct: 114 YYTNNEIDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLY 173

Query: 148 EAAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWF 207
           EA++L  +GE      R+F T +L++ +  +KD  +L+ +  ALELP HWR+Q    R F
Sbjct: 174 EASFLSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSF 233

Query: 208 IDAYESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENF 267
           IDAY+  PD+N  +LELAKLDFNMVQA+ Q++L+  S WW   G  ++L F RDR++E +
Sbjct: 234 IDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECY 293

Query: 268 LWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQH 327
            WT GV    Q GY R M TK++AL+T+IDD +D+YGTL+EL+LFT +++RWD+ +M Q 
Sbjct: 294 YWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQL 353

Query: 328 PYYLKFCFLALHNFI 342
           P Y++ C+LAL NF+
Sbjct: 354 PPYMQICYLALFNFV 368
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 100.0
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 100.0
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1di1_A 300 Aristolochene synthase; sesquiterpene cyclase, iso 99.83
3bny_A 320 Aristolochene synthase; sesquiterpene cyclase, iso 99.83
1ps1_A 337 Pentalenene synthase; antibiotic biosynthesis, ses 99.81
3kb9_A 382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 99.43
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 87.81
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
Probab=100.00  E-value=1.5e-116  Score=912.78  Aligned_cols=336  Identities=35%  Similarity=0.601  Sum_probs=317.6

Q ss_pred             ccCCCCCCCCCCC-----Cccccc-----hHHHHHHHHHHHHHHHHHHhhcccCCccchhhHHHHHHhhCCccchHHHHH
Q 040042           22 ISLGLPRSCHFTP-----FQVQCL-----GKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIK   91 (363)
Q Consensus        22 ~~~~~r~~a~~~p-----~f~~~~-----~~~~~~~~~~Lk~~Vk~~l~~~~~~d~~~~L~lID~LqRLGI~~hFe~EI~   91 (363)
                      ..++.||+|||||     +|++++     .+.+.+++++||++||+||.++. .+++++|+|||+||||||+|||++||+
T Consensus        12 ~~~~~R~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~-~~~~~~L~lID~lqrLGi~~hF~~EI~   90 (550)
T 3m00_A           12 EEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATG-MKLADTLNLIDTIERLGISYHFEKEID   90 (550)
T ss_dssp             ----CCCCCCCCCCTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSS-CCHHHHHHHHHHHHHTTCGGGCHHHHH
T ss_pred             ccccCCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhcc-cCHHHHHHHHHHHHHcCchhhhHHHHH
Confidence            4556899999999     788873     45688999999999999997532 689999999999999999999999999


Q ss_pred             HHHHHHHhhCcccCCCChhHHHHHHHhhhhcCCccccccccccccc-----------cchHHHHHHHHhhcCCCCCchHH
Q 040042           92 KLRNAIYRNNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFF-----------DDWKGILSMYEAAYLLVEGENIF  160 (363)
Q Consensus        92 ~~L~~iy~~~~~~~~~DL~~~AL~FRLLR~hGy~VSs~~DvF~~F~-----------~dv~glLsLYeAS~l~~~gE~iL  160 (363)
                      ++|+++|++|..  ..||++|||+|||||||||+|||  |||++|+           +|++||||||||||+++|||+||
T Consensus        91 ~~L~~i~~~~~~--~~dl~~~al~FRLLR~hGy~VS~--dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~gE~iL  166 (550)
T 3m00_A           91 DILDQIYNQNSN--CNDLCTSALQFRLLRQHGFNISP--EIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL  166 (550)
T ss_dssp             HHHHHHHHHCCC--CSSHHHHHHHHHHHHHTTCCCCG--GGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCGGG
T ss_pred             HHHHHHHHhccc--CCCHHHHHHHHHHHHhcCCCCCh--HHhhhccccCCCccccchhchHHHHHHHHHHhcCCCCcHHH
Confidence            999999998762  47999999999999999999999  9999997           79999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCchHHHHHHHhccCcccccchhhHHHHHHH-HhcCCCCCcHHHHHHHHhhhHHHHHhhHHH
Q 040042          161 YEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFID-AYESGPDINHVLLELAKLDFNMVQAKHQED  239 (363)
Q Consensus       161 deA~~Ft~~~L~~~~~~~~~~~L~~~V~~aL~~P~~~~l~Rlear~yI~-~Y~~~~~~n~~lLelAKlDFn~~Q~~hq~E  239 (363)
                      |+|+.||++||++.+ +..+++|+++|+|||++|||+++||+|||+||+ .|++++++|++||||||+|||+||++||+|
T Consensus       167 deA~~fs~~~L~~~~-~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~E  245 (550)
T 3m00_A          167 EDALAFSTIHLESAA-PHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQE  245 (550)
T ss_dssp             TTHHHHHHHHHHHHG-GGCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-hccCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHH
Confidence            999999999999988 457888999999999999999999999999999 999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCccccchhhHHHHHHhhcccCCCchhhhHhHHhHHHHHhhhhhhhcccCCHHHHHHHHHHhhhc
Q 040042          240 LESVSEWWEYVGFGNKLNFARDRLMENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERW  319 (363)
Q Consensus       240 L~~lsrWw~~~~l~~~L~faRdr~ve~yfwa~~~~fEP~~s~~Ri~~aK~~~litviDD~yD~yGtleEl~~ft~aveRW  319 (363)
                      |++++|||+++|++.+|||||||+||||||++|++||||||.+|++|||+++|+|++||+||+|||+|||++||+||+||
T Consensus       246 L~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RW  325 (550)
T 3m00_A          246 LAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRW  325 (550)
T ss_dssp             HHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhc
Confidence            99999999999998899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCChHHHHHHHHHHHHHHHHHHHHHhccCCccchhccC
Q 040042          320 DVSAMDQHPYYLKFCFLALHNFIMKLLLTLSKKKKLTSFVILKK  363 (363)
Q Consensus       320 D~~~~~~Lpeymk~~f~aL~~~~~ei~~~~~~~~g~~~~~~lk~  363 (363)
                      |++++++||+|||+||.+|+|++||+++++.++||+++++|+++
T Consensus       326 D~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~  369 (550)
T 3m00_A          326 DINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIE  369 (550)
T ss_dssp             CGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHH
T ss_pred             CccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHH
Confidence            99999999999999999999999999999999888899999874
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 363
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 3e-52
d1n1ba2 328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-51
d5easa2 328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 2e-51
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 3e-50
d1ps1a_ 311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 1e-11
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  170 bits (432), Expect = 3e-52
 Identities = 73/194 (37%), Positives = 103/194 (53%), Gaps = 20/194 (10%)

Query: 41  GKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRN 100
            + +  R  EL   VR +L +   M+P+ Q EL   L+ LG+S  F DEIK++   IY  
Sbjct: 16  EERHLDRKAELIVQVRILLKEK--MEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNE 73

Query: 101 -----NNLQKQESLYDVALEFRLLRQHGYDTATTASIQLK----------FFDDWKGILS 145
                NN  ++  LY  AL FRLLRQHG++ +       K             D KG+L 
Sbjct: 74  HKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQ 133

Query: 146 MYEAAYLLVEGENIFYEIRNFTTTYLKEYIKHNK---DPYILTLVNHALELPLHWRMQRM 202
           +YEA++LL +GE+     R F T  L++ +       D  +L  + H+L+LPLHWR+Q +
Sbjct: 134 LYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSV 193

Query: 203 ETRWFIDAYESGPD 216
           E RWFIDAY   PD
Sbjct: 194 EARWFIDAYARRPD 207
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d5easa2 328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2 328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_ 311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 98.75
d1di1a_ 300 Aristolochene synthase {Fungus (Penicillium roquef 96.99
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=1.1e-61  Score=444.99  Aligned_cols=178  Identities=42%  Similarity=0.709  Sum_probs=160.8

Q ss_pred             Cccccc-----hHHHHHHHHHHHHHHHHHHhhcccCCccchhhHHHHHHhhCCccchHHHHHHHHHHHHhhC-----ccc
Q 040042           35 FQVQCL-----GKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNN-----NLQ  104 (363)
Q Consensus        35 ~f~~~~-----~~~~~~~~~~Lk~~Vk~~l~~~~~~d~~~~L~lID~LqRLGI~~hFe~EI~~~L~~iy~~~-----~~~  104 (363)
                      +|++|+     ++.+.+++++||++||+|+.++  .|+.++|+|||+||||||+|||++||+++|+++|++.     .+.
T Consensus         5 ~fl~sl~~~~~~e~~~~r~e~Lkeevr~ml~~~--~d~~~~L~lID~lqRLGisyhFe~EI~~~L~~i~~~~~~~~~~~~   82 (207)
T d1n1ba1           5 NYIQSLNTPYTEERHLDRKAELIVQVRILLKEK--MEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEV   82 (207)
T ss_dssp             HHHHHCCCSTTSHHHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHCCC
T ss_pred             hHHHhCCCCcccHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhchhcccccc
Confidence            466553     5788999999999999999887  7899999999999999999999999999999999852     112


Q ss_pred             CCCChhHHHHHHHhhhhcCCccccccccccccc------------cchHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHH
Q 040042          105 KQESLYDVALEFRLLRQHGYDTATTASIQLKFF------------DDWKGILSMYEAAYLLVEGENIFYEIRNFTTTYLK  172 (363)
Q Consensus       105 ~~~DL~~~AL~FRLLR~hGy~VSs~~DvF~~F~------------~dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~  172 (363)
                      ...||++|||+|||||||||+|||  |||++|+            +||+||||||||||+++|||+|||+|++||++||+
T Consensus        83 ~~~DL~~~AL~FRLLRqhGy~VS~--dvF~~F~d~~g~~fk~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~  160 (207)
T d1n1ba1          83 EKMDLYFTALGFRLLRQHGFNISQ--DVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQ  160 (207)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCCCCG--GGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHcCCCCCH--HHHHHhccCCCCchhhhHHHhHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHH
Confidence            346999999999999999999999  9999998            79999999999999999999999999999999999


Q ss_pred             HHHhc---CCCchHHHHHHHhccCcccccchhhHHHHHHHHhcCCCC
Q 040042          173 EYIKH---NKDPYILTLVNHALELPLHWRMQRMETRWFIDAYESGPD  216 (363)
Q Consensus       173 ~~~~~---~~~~~L~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~  216 (363)
                      +++.+   .++++|+++|+|||++|+|+++|||||||||+.|+++++
T Consensus       161 ~~l~~~~~~~~~~l~~~V~~AL~~P~~~~l~rleaR~yI~~Ye~~~d  207 (207)
T d1n1ba1         161 KKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPD  207 (207)
T ss_dssp             HHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTT
T ss_pred             HHHHhcccccchhHHHHHHHHhCCCccCCCcHHHHHHhHHHhCCCCC
Confidence            98743   458899999999999999999999999999999998764
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure