Citrus Sinensis ID: 040043

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
Protein Sequence
IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQNARNTIILVAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFLSLSIVIILVSIIPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVGAGTLGSLFVYLGVALTRHWLRKLKWRAENGRKQGRVSVTRERIQSRNTKFKTKNKSQSESTNSDVDSSTSVGYYAY
Secondary Structure (PSIPRED)
ccHHHHcccHHHHHHHHHccccHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcHHHHccccccHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccEEEEcccccEEEEEEHHHHHHHHHHHHHHHHHHEEHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
ikaatgfgHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMefeedrdestplhvAISRGKIDIVKEILKVrpsfceqadknrclplhyasrignVEITKLLlnskpdmalqynnngytplhqAAINGHVKILEAFiassptsfnclttdgdTVFHLALRFGKYNAFIFLAEsfdftgllhqqdqFGNTVLHLAILRNNYQLAEYIIKKTKvdkncrnytnQTALDVLkesgtkeafsselqsveepngspkhlQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQNARNTIILVAVLIATVTyaggisppggvyqegplkgkstvgrtTAFKVFEISNNIALFLSLSIVIILVSIIPFERKKLMRLLVITHKLMWVSISFMATAYIAASritvpngrgtgwVADSLLAVGAGTLGSLFVYLGVALTRHWLRKLKWRAengrkqgrvSVTRERIQSrntkfktknksqsestnsdvdsstsvgyyay
Flexible Loop (DISEMBL)
ikaatgfghiELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEedrdestplhvaisrgkidiVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKktkvdkncrnyTNQTALDVLKESGTKEAFSSelqsveepngspkhlqqykdlskrQIKELskryksrrdkkneLQREALQNARNTIILVAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFLSLSIVIILVSIIPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVGAGTLGSLFVYLGVALTRHWLRKLkwraengrkqgrvsvtreriqsrntkfktknksqsestnsdvdsstsvgyyay
Low Complexity Region (SEG)
IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQNARNTIILVAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFlslsiviilvsiiPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVGAGTLGSLFVYLGVALTRHWLRKLKWRAENGRKQGRVSVTRERIQSRNTKFKTKNKsqsestnsdvdsstsvGYYAY
Disordered region (IsUnstruct)
****TGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDV**************************************************************ARNTIILVAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFLSLSIVIILVSIIPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVGAGTLGSLFVYLGVALTRHWLRKLKWRA*************************************************
Disordered Region (DISOPRED)
IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSPKHLQQYKDLS********************LQREALQNARNTIILVAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFLSLSIVIILVSIIPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVGAGTLGSLFVYLGVALTRHWLR*******************************************VDSSTSVGYYA*
Disordered Region (DISEMBL)
IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGT*************************DLSKRQIKELSKRYKSRRDKKNELQREALQNARNTIILVAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFLSLSIVIILVSIIPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVGAGTLGSLFVYLGVALTRHWLRKLKWRAEN**********RERIQSRN**********************SVGYYAY
Disordered Region (DISPRO)
IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQNARNTIILVAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFLSLSIVIILVSIIPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVGAGTLGSLFVYLGVALTRHWLRKLKWRAE**********************************SDVDSS**V*****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSPKHLQQYKDLSKRQxxxxxxxxxxxxxxxxxxxxxALQNARNTIILVAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFLSLSIVIILVSIIPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVGAGTLGSLFVYLGVALTRHWLRKLKWRAENGRKQGRVSVTRERIQSRNTKFKTKNKSQSESTNSDVDSSTSVGYYAY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	539	2.2.26 [Sep-21-2011]
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.686	0.695	0.275	3e-40
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.814	0.837	0.258	2e-39
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.851	0.777	0.264	2e-38
Q8NFD2	765	Ankyrin repeat and protei	yes	no	0.389	0.274	0.325	3e-16
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.478	0.137	0.298	7e-16
Q54KA7	986	Ankyrin repeat, PH and SE	yes	no	0.415	0.227	0.299	1e-15
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.419	0.057	0.290	2e-15
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	yes	no	0.419	0.057	0.290	2e-15
Q9ET47	871	Espin OS=Mus musculus GN=	yes	no	0.411	0.254	0.25	1e-14
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.421	0.115	0.272	2e-14

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score =  166 bits (421), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 205/403 (50%), Gaps = 33/403 (8%)

Query: 97  RDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSK 156
           + +    HVA  RG + IVKE+L++ P  C   D +   PL+ A+   ++EI   +L+  
Sbjct: 92  KSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVD 151

Query: 157 PDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNA 216
           P  A+    NG T LH A   G ++I++A I             G T  H+A++ G+   
Sbjct: 152 PSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVK-GRSLE 210

Query: 217 FIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALD 276
            +      D+T +L+++D+ GNT LH+A  +   Q+   ++  T ++ N  N   +TA+D
Sbjct: 211 VVEEILQADYT-ILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMD 269

Query: 277 V----------------LKESGTKEAF----SSELQSVEEPNGSPKHLQQYKDLSKRQIK 316
           +                L E+G K         E ++++      KH  Q + L   Q +
Sbjct: 270 LADKLQYSESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLL---QNE 326

Query: 317 ELSKRYKSRRDKKNELQREALQNARNTIILVAVLIATVTYAGGISPPGGVYQEGPLKGKS 376
           + ++R      +  +L REA+QN  N+I +VAVL A++ +    + PG  + EG   G++
Sbjct: 327 KTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQA 386

Query: 377 TVGRTTAFKVFEISNNIALFLSLSIVIILVSIIPFERKKLMRLLVITHKLMWVSISFMAT 436
            +   T F+VF + N  +LF+SL++V++ ++++ ++ +   +++ + +KLMW + +    
Sbjct: 387 NIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAACACTFG 446

Query: 437 AYIAASRITVPNGRGTGWVADSLLAVGA----GTLGSL--FVY 473
           A++A +   V  G+G  W+A ++  +GA    GTL S+  FV+
Sbjct: 447 AFLAIAFAVV--GKGNSWMAITITLLGAPILVGTLASMCYFVF 487

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 243/487 (49%), Gaps = 48/487 (9%)

Query: 32  ETPLHEACRQGNAEISALLLKT-----NLFVATLL---NQERQSAFLLACRRGHVNVVKL 83
           +TPLH A R+G  +   LLL+       + +  LL   NQ  ++A  +A   G+ ++VK+
Sbjct: 18  DTPLHTAVREGKTD---LLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTDMVKI 74

Query: 84  MLNQS-WLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASR 142
           ++  S  ++   + ++     H+A   G + ++  +++  P      D ++   LH A+ 
Sbjct: 75  LMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAAS 134

Query: 143 IGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGD 202
            G+ EI   LL+   D+A    +NG T LH AA NGH  I++  I         +   G 
Sbjct: 135 QGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQ 194

Query: 203 TVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKV 262
           T  H+A++ G+    + +    D + L++  D  GNT LH+A+ +N  ++ + ++K  +V
Sbjct: 195 TALHMAVK-GQNTEIVDVLMEADGS-LINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEV 252

Query: 263 DKNCRNYTNQTALDVLKESGTKEAF----------SSELQSVE--EPNGSPKHLQQ-YKD 309
            +   N + +TALD+ +++G  E            +  ++  E  EP+GS + L++   +
Sbjct: 253 SRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSE 312

Query: 310 LSKRQIKELSKRYKSRRD------KKNELQREALQNARNTIILVAVLIATVTYAGGISPP 363
           +      +L +  ++RR+      + N++  E L NA N+  LVA+LIATV +A   + P
Sbjct: 313 IGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVP 372

Query: 364 GGVYQEGPLK-------GKSTVGRTTAFKVFEISNNIALFLSLSIVIILVSIIPFERKKL 416
           G  Y + P         G++       F +F + ++ ALF+SL++V++  S++  ER+  
Sbjct: 373 GQ-YTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAK 431

Query: 417 MRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVGAGTLGSLFVYLGV 476
            +++ I +KLMW++   ++ A+++ S + V          +  LAVG   +G+L +   +
Sbjct: 432 KQMMAIINKLMWMACIMISVAFVSLSFVVVGE-------KEKPLAVGVTAIGALIMVSTL 484

Query: 477 ALTRHWL 483
               +W+
Sbjct: 485 GTMCYWV 491

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  160 bits (406), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/496 (26%), Positives = 242/496 (48%), Gaps = 37/496 (7%)

Query: 22  QLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVV 81
           Q++  +N ++E  L         E  A + +    +   +N+  ++A   A  +GH++VV
Sbjct: 92  QILKDINSQMEGIL------SGEEFDAEVAEIRASIVNEVNELGETALFTAADKGHLDVV 145

Query: 82  KLMLNQSWLMEF-EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYA 140
           K +L  S      +++R    PLH+A  +G   IV+ +L    +  +    +   PL  A
Sbjct: 146 KELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSA 205

Query: 141 SRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTD 200
           +  G+ E+   LL+   ++     +N    LH AA  GHV++++A ++  P     +   
Sbjct: 206 AMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKK 265

Query: 201 GDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKT 260
           G T  H+A++ G+ +  + L    D   ++ Q D+  NT LH+A  +   ++ E ++   
Sbjct: 266 GQTALHMAVK-GQSSEVVKLLLDAD-PAIVMQPDKSCNTALHVATRKKRAEIVELLLSLP 323

Query: 261 KVDKNCRNYTNQTALDV-----LKESGT--KEAFS-------SEL-QSVEEPNGSPKHLQ 305
             + N     ++TALD+     L E  +  KE  +       +EL Q  +E   +   ++
Sbjct: 324 DTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIK 383

Query: 306 QYKDLSKRQIKELSKRYKSRRDKKNELQREALQNARNTIILVAVLIATVTYAGGISPPGG 365
               +   Q K  +K   +   +  +L RE + NA N++ +VAVL ATV +A   + PGG
Sbjct: 384 NDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGG 443

Query: 366 VYQEGPLKGKSTVGRTTAFKVFEISNNIALFLSLSIVIILVSIIPFERKKLMRLLVITHK 425
              +G       VGR + FK+F I N +ALF SL++V++ ++++  E K   R++ + +K
Sbjct: 444 DNNDG---SAVVVGRAS-FKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINK 499

Query: 426 LMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVG----AGTLGSLFVYLGVALTRH 481
           LMW++    + A++A+S I V  GR   W A+ +  VG    AG LG++  Y+   +   
Sbjct: 500 LMWLASMCTSVAFLASSYIVV--GRKNEWAAELVTVVGGVIMAGVLGTMTYYV---VKSK 554

Query: 482 WLRKLKWRAENGRKQG 497
             R ++ + ++ R+ G
Sbjct: 555 RTRSMRKKVKSARRSG 570

Arabidopsis thaliana (taxid: 3702)

>sp|Q8NFD2|ANKK1_HUMAN Ankyrin repeat and protein kinase domain-containing protein 1 OS=Homo sapiens GN=ANKK1 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 111/218 (50%), Gaps = 8/218 (3%)

Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
           TPLH A  Q N E  A LL +      L   E ++   +A   GHV++VKL+ +Q   ++
Sbjct: 463 TPLHLAA-QNNFENVARLLVSRQADPNLHEAEGKTPLHVAAYFGHVSLVKLLTSQGAELD 521

Query: 93  FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
            ++ R+  TPLH+A+ RGK+  ++ +LK   +  +  D++   PLH A+  G   I K+L
Sbjct: 522 AQQ-RNLRTPLHLAVERGKVRAIQHLLKSG-AVPDALDQSGYGPLHTAAARGKYLICKML 579

Query: 153 LNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG 212
           L     + L   + G+TPLH AA  GH++I+   +A S  +   L     T  HLA R G
Sbjct: 580 LRYGASLELP-THQGWTPLHLAAYKGHLEIIH-LLAESHANMGALGAVNWTPLHLAARHG 637

Query: 213 KYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNY 250
           +      L +        +  +Q G T LHLA+ R+ +
Sbjct: 638 EEAVVSALLQC---GADPNAAEQSGWTPLHLAVQRSTF 672

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 85.9 bits (211), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 137/308 (44%), Gaps = 50/308 (16%)

Query: 1   IKAATGFGHIELVTEIIK--LCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVA 58
           +  A+  GH+ +V  +++    P +    N K+ETPLH A R G+ E++  LL+    V 
Sbjct: 408 LHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAKV- 463

Query: 59  TLLNQERQSAFLLACRRGHVNVVKLMLN-------------------------QSWLMEF 93
               ++ Q+    A R GH N+VKL+L                          ++ L   
Sbjct: 464 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 523

Query: 94  EEDRDES-------TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV 146
           E++  ++       TPLHVA   GK+  V E+L  R +    A KN   PLH A    N+
Sbjct: 524 EKEASQACMTKKGFTPLHVAAKYGKVR-VAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 582

Query: 147 EITKLLLNSKPDMALQYNN--NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTV 204
           +I KLLL   P     ++   NGYTPLH AA    V++  + +     S N  +  G T 
Sbjct: 583 DIVKLLL---PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVTP 638

Query: 205 FHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK-TKVD 263
            HLA + G +   + L  S    G L   ++ G T LHL     +  +A+ +IK    VD
Sbjct: 639 LHLAAQEG-HAEMVALLLSKQANGNL--GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 695

Query: 264 KNCR-NYT 270
              R  YT
Sbjct: 696 ATTRMGYT 703

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q54KA7|SECG_DICDI Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 113/237 (47%), Gaps = 13/237 (5%)

Query: 26  AVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLML 85
           AV    ETPLH A   GN +   LL+K +  V  + N +  +    A   GH + V L+L
Sbjct: 164 AVTTNGETPLHHASAGGNPQCVELLIKADSKVNAVDN-DCITPLHQASFSGHSSCVSLLL 222

Query: 86  NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSF-CEQADKNRCLPLHYASRIG 144
            +   ++   D    +PLH A S G +D V+++++   +  C   D     PLH+    G
Sbjct: 223 KKGAKVD-PRDIHGISPLHNAASAGYVDCVEQLVRNGENINC--VDIEGVTPLHHTCFNG 279

Query: 145 NVEITKLL--LNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGD 202
           N+++TK L  L +K +M  +    G TPLH+AA NGH ++ E  +   PT  +C  +   
Sbjct: 280 NLQLTKRLIELGAKINMVDEM---GETPLHKAAFNGHKEVCEYLLYLDPTMIDCRDSRQS 336

Query: 203 TVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
           T  HLA   G  +    L     +   ++ +D+ G T LH A    +   A+ ++ K
Sbjct: 337 TSLHLAAFNGLLDMVDLL---IRYKAQINIKDEEGATPLHKASFNGHSSCAKLLVDK 390

Dictyostelium discoideum (taxid: 44689)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 8/234 (3%)

Query: 24  VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
           + A+ E   TP+H A   G+  I  LLL+ N     + N   ++A  +A R G V VV+ 
Sbjct: 424 IQAITESGLTPIHVAAFMGHLNIVLLLLQ-NGASPDVTNIRGETALHMAARAGQVEVVRC 482

Query: 84  MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRI 143
           +L    L++    R+E TPLH+A   GK +IV+ +L+   +  + A  N   PLH ++R 
Sbjct: 483 LLRNGALVDARA-REEQTPLHIASRLGKTEIVQLLLQHM-AHPDAATTNGYTPLHISARE 540

Query: 144 GNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDT 203
           G V++  +LL +    +L     G+TPLH AA  G + + +  +     + +    +G T
Sbjct: 541 GQVDVASVLLEAGAAHSL-ATKKGFTPLHVAAKYGSLDVAKLLLQRR-AAADSAGKNGLT 598

Query: 204 VFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYII 257
             H+A  +      + L E        H   + G T LH+A  +N  Q+A  ++
Sbjct: 599 PLHVAAHYDNQKVALLLLEK---GASPHATAKNGYTPLHIAAKKNQMQIASTLL 649

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 8/234 (3%)

Query: 24  VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
           + A+ E   TP+H A   G+  I  LLL+ N     + N   ++A  +A R G V VV+ 
Sbjct: 424 IQAITESGLTPIHVAAFMGHLNIVLLLLQ-NGASPDVTNIRGETALHMAARAGQVEVVRC 482

Query: 84  MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRI 143
           +L    L++    R+E TPLH+A   GK +IV+ +L+   +  + A  N   PLH ++R 
Sbjct: 483 LLRNGALVDARA-REEQTPLHIASRLGKTEIVQLLLQHM-AHPDAATTNGYTPLHISARE 540

Query: 144 GNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDT 203
           G V++  +LL +    +L     G+TPLH AA  G + + +  +     + +    +G T
Sbjct: 541 GQVDVASVLLEAGAAHSL-ATKKGFTPLHVAAKYGSLDVAKLLLQRR-AAADSAGKNGLT 598

Query: 204 VFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYII 257
             H+A  +      + L E        H   + G T LH+A  +N  Q+A  ++
Sbjct: 599 PLHVAAHYDNQKVALLLLEK---GASPHATAKNGYTPLHIAAKKNQMQIASTLL 649

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q9ET47|ESPN_MOUSE Espin OS=Mus musculus GN=Espn PE=1 SV=2

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 2/224 (0%)

Query: 34  PLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEF 93
           P+H A R G       L++     A    +   +    A   G+++ ++ +L Q      
Sbjct: 39  PVHHAARSGKLHCLRYLVEEVALPAVSRARNGATPAHDAAATGYLSCLQWLLTQGGCRVQ 98

Query: 94  EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
           E+D   +T LH+A   G  D+VK +L    +          LP+HYA+  G++   KLL+
Sbjct: 99  EKDNSGATVLHLAARFGHPDVVKWLLYQGGANSAITTDTGALPIHYAAAKGDLPSLKLLV 158

Query: 154 NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
              P+      NNG TPL+ A   GH+++ +  +       +    DG T  H A + G 
Sbjct: 159 GHYPEGVNAQTNNGATPLYLACQEGHLEVTKYLVQECSADPHLRAQDGMTPLHAAAQMGH 218

Query: 214 YNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYII 257
               ++L    D +    +QD  G T +H A  R + ++  +++
Sbjct: 219 NPVLVWLVSFADVS--FSEQDHDGATAMHFAASRGHTKVLSWLL 260

Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimensions, dynamics and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in variouS mechanosensory and chemosensory cells.

Mus musculus (taxid: 10090)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 8/235 (3%)

Query: 24  VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
           + AV E   TP+H A   G+  I + L+       T  N   ++A  +A R G   VV+ 
Sbjct: 409 IQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTT-NVRGETALHMAARSGQAEVVRY 467

Query: 84  MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRI 143
           ++     +E +  +D+ TPLH++   GK DIV+++L+   S    A  +   PLH A+R 
Sbjct: 468 LVQDGAQVEAKA-KDDQTPLHISARLGKADIVQQLLQQGAS-PNAATTSGYTPLHLAARE 525

Query: 144 GNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDT 203
           G+ ++   LL+    +++     G+TPLH AA  G +++    +  S  S +     G T
Sbjct: 526 GHEDVAAFLLDHGASLSI-TTKKGFTPLHVAAKYGKLEVASLLLQKS-ASPDAAGKSGLT 583

Query: 204 VFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
             H+A  +      + L    D     H   + G T LH+A  +N   +A  +++
Sbjct: 584 PLHVAAHYDNQKVALLL---LDQGASPHAAAKNGYTPLHIAAKKNQMDIATSLLE 635

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	539
297743226	1064	unnamed protein product [Vitis vinifera]	0.949	0.481	0.488	1e-138
255549878	597	ankyrin repeat-containing protein, putat	0.946	0.854	0.468	1e-132
224059128	534	predicted protein [Populus trichocarpa]	0.870	0.878	0.489	1e-127
357454831	638	Ankyrin repeat-containing protein [Medic	0.962	0.813	0.402	1e-113
359476356	601	PREDICTED: ankyrin repeat-containing pro	0.981	0.880	0.418	1e-111
255550978	595	ankyrin repeat-containing protein, putat	0.977	0.885	0.413	1e-110
224142976	591	predicted protein [Populus trichocarpa]	0.920	0.839	0.424	1e-107
449448162	625	PREDICTED: ankyrin repeat-containing pro	0.964	0.832	0.378	1e-105
225430027	595	PREDICTED: ankyrin repeat-containing pro	0.966	0.875	0.411	1e-103
296081888	600	unnamed protein product [Vitis vinifera]	0.951	0.855	0.412	1e-101

>gi|297743226|emb|CBI36093.3| unnamed protein product [Vitis vinifera]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 264/540 (48%), Positives = 367/540 (67%), Gaps = 28/540 (5%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
           A+ FGH E+V++IIKL P+     N+K ETPLHEACR G+A +  +LL+TN +V  +LN 
Sbjct: 42  ASRFGHHEMVSKIIKLDPRTTEDCNKKGETPLHEACRHGHANVVMMLLETNPWVGCVLNH 101

Query: 64  ERQSAFLLACRRGHVNVVKLMLNQ-------SWLMEFEEDRDESTPLHVAISRGKIDIVK 116
           E QSA  LAC  GH+ VVKL+LNQ         L +F          H+A      D+V+
Sbjct: 102 EDQSAMFLACSNGHLEVVKLILNQPCKVKMFCCLTKFR--------YHIA------DVVR 147

Query: 117 EILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAI 176
           +IL+V P F  + DK     LHYA    N+EI K+LL   P +A++++N+  TPLH AA+
Sbjct: 148 KILEVCPDFAPKTDKKGFSALHYACCGDNLEIVKMLLRLDPGLAMKFDNSRCTPLHLAAM 207

Query: 177 NGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQF 236
            G   +LE F+A  PTSF  LT++G+TVFHL +RF +Y+AF+ LA+ F  T L  + D+ 
Sbjct: 208 KGKGAVLEEFLAIVPTSFQFLTSEGETVFHLIVRFNQYSAFVCLAQVFGDTLLFQRPDRN 267

Query: 237 GNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEE 296
           GNT+LHLA+    ++LA+YII KT V+ N RN   QT LD+L ++G+    +  L+ + +
Sbjct: 268 GNTILHLAVSAWRHRLADYIINKTGVEINFRNSRGQTVLDILNQAGSTSK-NMHLEDMIK 326

Query: 297 PNGSPKHLQ-QYKDLSKRQIKELSKRYKSRRDKKNELQREALQNARNTIILVAVLIATVT 355
             G  + ++  +K LS+R  ++L + ++ R++++NE+ +EALQNARNTIILVA+LIATVT
Sbjct: 327 KAGGKRSIELSHKHLSQRHRRDLLELHQIRQNRQNEIYKEALQNARNTIILVAILIATVT 386

Query: 356 YAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFLSLSIVIILVSIIPFERKK 415
           +  GISPPGGVYQ+GPLKGKSTVGRT AFK+F ISNNIALF SL IVI+LVSIIPF+RK 
Sbjct: 387 FTAGISPPGGVYQDGPLKGKSTVGRTIAFKIFMISNNIALFSSLCIVIVLVSIIPFQRKS 446

Query: 416 LMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVGAGTLGSLFVYLG 475
           L+RLLV+ HK+MWV++SFMATAY+AA+ + +P+ RGT W  + LL++  GT+GS+FVYLG
Sbjct: 447 LVRLLVVAHKVMWVAVSFMATAYVAATWVIIPHDRGTKWTLELLLSLSIGTVGSVFVYLG 506

Query: 476 VALTRHWLRKLKWRAENGRKQGRVSVTRERIQSRNTKFKTKNKSQSESTNSDVDSSTSVG 535
           V L RH L KLK R E   K   +    E + + +     K  + ++S+ SDVDS+  +G
Sbjct: 507 VKLVRHRLTKLKTRREKHTKSKGMKQIEEAVPAAD-----KRNNITQSSYSDVDSALFLG 561

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549878|ref|XP_002515990.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223544895|gb|EEF46410.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 272/580 (46%), Positives = 368/580 (63%), Gaps = 70/580 (12%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
           A+   H EL   I++LCP LV   N   ETPLHE  R GNA+I+ LLL+TN ++A++LN 
Sbjct: 44  ASRMEHTELARRIVQLCPDLVEMENAMGETPLHEVSRNGNADIATLLLETNPWMASMLNL 103

Query: 64  ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRP 123
             QSAF +AC  GH++VVKL+LN  WLM+ EE+R   T L   IS    +IV+EILK+RP
Sbjct: 104 ADQSAFSIACSNGHLDVVKLLLNLHWLMDIEEER---TGLDEMISTE--NIVREILKMRP 158

Query: 124 SFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKIL 183
            F  + DK+ C+PLHYA      +I +LL+   P  A ++N NGYTPLH AA+NG   IL
Sbjct: 159 KFALKTDKDGCVPLHYACEKRQFKIIRLLIQFAPASANKFNKNGYTPLHYAAMNGETAIL 218

Query: 184 EAFIASSPTSFNCLTTDG-DTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLH 242
           E F++ +PTSFN LT  G +T  HLA +FGKYNAF+ +A  +  T L+ + D        
Sbjct: 219 EEFMSLAPTSFNFLTELGQETALHLAAKFGKYNAFVLMASKY--TDLIQKAD-------- 268

Query: 243 LAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLK----------------------- 279
               RN     EYII  T +    R++   TALD+L                        
Sbjct: 269 ----RN-----EYIIVATHIHVKLRDHEGHTALDLLSQANFCSKFKHIKDLLVKSKNSGN 319

Query: 280 ------------ESGTKEAFSSELQSVE-EPNGSPK------HLQQYKDLSKRQIKELSK 320
                       E+GT     + ++S E + N S +       L ++K LS+R+ KEL K
Sbjct: 320 DVGNKSNKQLIIEAGTSLGAHTVIESEELDDNESEQSSSGRGELDRHKHLSERRRKELIK 379

Query: 321 RYKSRRDKKNELQREALQNARNTIILVAVLIATVTYAGGISPPGGVYQ-EGPLKGKSTVG 379
            +KSRR+++ E QREALQNARNTIILVA+LIA+V +  G++PPGGVYQ E  LKG+S  G
Sbjct: 380 HHKSRRNRQYETQREALQNARNTIILVAILIASVAFTVGLNPPGGVYQDEETLKGQSIAG 439

Query: 380 RTTAFKVFEISNNIALFLSLSIVIILVSIIPFERKKLMRLLVITHKLMWVSISFMATAYI 439
           R  AFK+F ISN+IALF SL IVIILVSIIPF+RK+LMRL+VITHK MW+++SFMATA++
Sbjct: 440 RKVAFKIFAISNSIALFTSLCIVIILVSIIPFQRKELMRLMVITHKAMWIAVSFMATAFV 499

Query: 440 AASRITVPNGRGTGWVADSLLAVGAGTLGSLFVYLGVALTRHWLRKLKWRAENGRKQGRV 499
           AA  + +P+ +G  W+  +++A+G G + ++F+YLGV + RHWLRKLKWR E G+K    
Sbjct: 500 AAGWVIMPHDQGI-WMLAAIIAIGGGIVTAVFIYLGVHIVRHWLRKLKWREERGKKTKIF 558

Query: 500 SVTRERIQSRNTKFKTKNKSQSESTNSDVDSSTSVGYYAY 539
           +V  ER  S+  + + + KSQSES+NSDV+S+ S GY+ Y
Sbjct: 559 AVNTERSISKG-EIQPRFKSQSESSNSDVESAKSFGYHTY 597

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059128|ref|XP_002299729.1| predicted protein [Populus trichocarpa] gi|222846987|gb|EEE84534.1| predicted protein [Populus trichocarpa]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 249/509 (48%), Positives = 325/509 (63%), Gaps = 40/509 (7%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
           A+  G ++LV EIIKL P +V A N+ LETPLHEACR+G ++I  LLL+T  +VA+  N 
Sbjct: 39  ASRLGFVDLVMEIIKLRPNMVQAENKMLETPLHEACREGKSKIVLLLLQTGSWVASNFNM 98

Query: 64  ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRP 123
           E QS  L+AC  GH+ VVK++LNQ   +  E D                +IVK IL+  P
Sbjct: 99  ENQSPLLIACSYGHLEVVKVLLNQPLFLRLEYDNPH-------------EIVKMILRACP 145

Query: 124 SFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKIL 183
           +  ++ D + C PLHYA + G++EITKLLL    D+ L YNN G+ PLH AAI+G+  IL
Sbjct: 146 NMAQKIDSDGCNPLHYACKNGHLEITKLLLRHDLDLTLIYNNKGFKPLHLAAIHGNGTIL 205

Query: 184 EAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHL 243
           E F+A +PTSF+CLTTDGD VFHL +RF  ++AF+ L   F  T L  Q DQFGNT+LH+
Sbjct: 206 EEFLAMAPTSFDCLTTDGDNVFHLLVRFNAHSAFMCLEHVFGDTKLFQQPDQFGNTILHI 265

Query: 244 AILRNNYQL-AEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNG--- 299
           AI    Y +    II + KVD N +N    TALD+L  +G+          +++  G   
Sbjct: 266 AISGGLYHVRISVIINERKVDINHQNNRGHTALDILNHAGSSLEIQDLRDMLKKAGGKLG 325

Query: 300 ----------SPK---------HLQ----QYKDLSKRQIKELSKRYKSRRDKKNELQREA 336
                     SP+          LQ     Y+  S  + K+L K +K    K+++   EA
Sbjct: 326 TGLSWSQKSESPRDALEREFDLQLQLGSSPYRHESIIRRKKLMKVHKRHHRKQHKAYTEA 385

Query: 337 LQNARNTIILVAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALF 396
           LQNARNT+ +VA++IATVT+  GI+PPGGVYQEGPLKGKST GRT+AFKVF I+NNIALF
Sbjct: 386 LQNARNTLTVVAIMIATVTFTAGINPPGGVYQEGPLKGKSTAGRTSAFKVFSITNNIALF 445

Query: 397 LSLSIVIILVSIIPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVA 456
            SL IVI LVSIIPF+RK LM+LLV+ HK MWV++SFMA AYIAA  + +P   G  W  
Sbjct: 446 TSLCIVIALVSIIPFQRKPLMKLLVVAHKGMWVAVSFMAAAYIAAIWVIMPESHGNVWTF 505

Query: 457 DSLLAVGAGTLGSLFVYLGVALTRHWLRK 485
           ++L+++ AGTLGS F+YLGV L  H LRK
Sbjct: 506 EALISIFAGTLGSAFIYLGVKLVGHHLRK 534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454831|ref|XP_003597696.1| Ankyrin repeat-containing protein [Medicago truncatula] gi|355486744|gb|AES67947.1| Ankyrin repeat-containing protein [Medicago truncatula]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 247/613 (40%), Positives = 346/613 (56%), Gaps = 94/613 (15%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
           A+ +G IE+V+EI+KLCP +V+A N+ +ETP+HEACRQ N ++  LLL+ N   A  LN 
Sbjct: 43  ASKYGCIEMVSEIVKLCPDMVSAENKNMETPIHEACRQENVKVLMLLLEVNPTAACKLNP 102

Query: 64  ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRP 123
             +SAFL+AC  GH+++V L+LN S ++  E    +    HVA  RG  D+V+E+L   P
Sbjct: 103 TCKSAFLVACSHGHLDLVNLLLNLSEIVGQEVAGFDQACFHVAAVRGHTDVVRELLNKWP 162

Query: 124 SFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKIL 183
              +  D+     LH+A   G+ EI  +LL+    +ALQYNNNGYTPLH A I G V  L
Sbjct: 163 DLIQVIDEKGNTALHHACYKGHFEIVWILLSRDSKLALQYNNNGYTPLHLAVIKGKVSTL 222

Query: 184 EAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHL 243
           + F+  S   F+  T + +TV HLA+R+G Y+A +FL      T L+H+QD++GNTVLHL
Sbjct: 223 DYFVVVSTAYFHYPTREEETVLHLAVRYGCYDALVFLVRVAYGTNLVHRQDKYGNTVLHL 282

Query: 244 AILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKES--------------------GT 283
           A+    +++A+++I +TKVD N RN    TALD+L ++                     T
Sbjct: 283 AVSGGRHKMADFLINRTKVDINTRNNEGLTALDILDQAMDNAENRQLQAIFIRDGGKRST 342

Query: 284 KEAFSSELQSVEEPNGSPKH----------------LQQYKDLSKRQIKE---------- 317
             +FS EL +   P+ + +H                +  Y  +S   + E          
Sbjct: 343 PSSFSLELDNTSSPSPTSRHSLSRRYISKEMEVLTEMVSYDCISPPPVSESTESISPQPQ 402

Query: 318 LSKRYK-------------------------------SRRDKKNELQREALQNARNTIIL 346
           +S+R++                               ++R   +E+ +EAL NARNTI+L
Sbjct: 403 VSERFENGTYNPYYFSPTNLVKQKHHHNKGKIENVNHTKRKHYHEMHKEALLNARNTIVL 462

Query: 347 VAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFLSLSIVIILV 406
           VAVLIATVT+A GISPPGGVYQEGP KG S  G T+AFKVF ISN IALF SLS+VI+LV
Sbjct: 463 VAVLIATVTFAAGISPPGGVYQEGPKKGISMAGETSAFKVFAISNIIALFTSLSVVIVLV 522

Query: 407 SIIPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVGAGT 466
           SIIPF RK    LL I HK+MWV+++FM T Y+AA+ + +P+ +   W++  LLA+G G 
Sbjct: 523 SIIPFRRKPQTILLTIAHKVMWVAVAFMGTGYVAATWVILPHNQEMQWLSVVLLALGGGF 582

Query: 467 LGSLFVYLGVALTRHWLRKLKWRAENGRKQGRVSVTRERIQSRNTKFKTKNKSQSESTNS 526
           LG++F+ L V L  HWLRK  WR                 + R        +S  ES +S
Sbjct: 583 LGTIFISLSVMLVEHWLRKSSWR-----------------KKRKESGDGTAESDKESEDS 625

Query: 527 DVDSSTSVGYYAY 539
           D  SS   GY++Y
Sbjct: 626 DFQSSYLQGYHSY 638

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476356|ref|XP_003631824.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/566 (41%), Positives = 339/566 (59%), Gaps = 37/566 (6%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
           A  FGH+EL +EI+ L P+L +A NEKLETPLHEACR+G  EI ALL+K + ++A  +N+
Sbjct: 43  AARFGHLELASEIVNLRPELSSAENEKLETPLHEACREGRVEIVALLMKVDQWIAPKVNR 102

Query: 64  ERQSAFLLACRRGHVNVVK-LMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVR 122
             +S   + C RG ++VVK L++N SWL+  E D   +T LH A S G  D+VKEI++ R
Sbjct: 103 NDESVLFVGCERGKLDVVKHLLVNHSWLLMLELDA-PTTSLHAAASGGHTDVVKEIIRER 161

Query: 123 PSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKI 182
           P F  + D   C PLH A   G++EIT+ LL   PD+    +N+G TPLH AA+ G V I
Sbjct: 162 PDFSWKKDSQGCTPLHLACSKGHLEITRELLRLDPDLTSLQDNDGRTPLHWAAMKGRVNI 221

Query: 183 LEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLH 242
           ++  ++ S  S    T  G+TV HLA++  +Y A  +L E+ + + LL+  D  GNT+LH
Sbjct: 222 IDEILSVSLQSAEMRTEHGETVLHLAVKNNQYEAVKYLTETLNISQLLNTPDSDGNTILH 281

Query: 243 LAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLK----------------ESGTKEA 286
           LA          Y++K   V+ N  N    T LDV++                E+G K  
Sbjct: 282 LATAGKLTTTVLYLLK-LGVNVNALNRKGYTPLDVVETDASNSGSLVVVPALLEAGAKRC 340

Query: 287 -----FSSELQSVEEPNG------SPK-HLQQYKDLSKRQIKELSKRYKSRRDKKNELQR 334
                 S E+Q++ EP+       SP       K   +   K   ++++ RR+K+ E Q 
Sbjct: 341 DQLPPVSQEIQTITEPSSGRLYPTSPNLPPPWPKRPPESPAKHHRRKHQRRREKQLEQQT 400

Query: 335 EALQNARNTIILVAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIA 394
           E L+NARNTI +VAVLIATVT++ G++PPGG  Q     GK+ +G+ T FKVF + N +A
Sbjct: 401 EGLRNARNTITVVAVLIATVTFSAGVNPPGGFNQS---SGKAIMGKKTPFKVFMVCNILA 457

Query: 395 LFLSLSIVIILVSIIPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGW 454
           LFLSL IVI+LVSIIPF RK +M+LL+ THK+MW+S++FMA AYIAA+   +P G  T W
Sbjct: 458 LFLSLGIVIVLVSIIPFRRKSMMKLLISTHKVMWMSVTFMAAAYIAATWTILPGGPSTKW 517

Query: 455 VADSLLAVGAGTLGSLFVYLGVALTRHWLRKLKWRAENGRKQGRVSVTRERIQSRNTKFK 514
           V  +L+++G G   ++ V LGV L +HWLRK +W+    +++ +       + SR  + +
Sbjct: 518 VLVTLVSIGGGCTMTICVGLGVLLIQHWLRKWEWKKT--KRKNKDGSPHSSMNSRVGEMQ 575

Query: 515 TKNKSQSEST-NSDVDSSTSVGYYAY 539
           T  +   +ST NSDVDSS   GY+ Y
Sbjct: 576 TIKRGDHDSTSNSDVDSSEKGGYHLY 601

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550978|ref|XP_002516537.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223544357|gb|EEF45878.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/561 (41%), Positives = 339/561 (60%), Gaps = 34/561 (6%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
           A   GH+ L  EI+KL P++V+ VN+K+ETPLHEACRQG  E+  LL++++ +V   LNQ
Sbjct: 44  AARLGHLNLAEEIVKLRPEMVSEVNKKMETPLHEACRQGKMELVKLLVESDPWVLYKLNQ 103

Query: 64  ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRP 123
           E ++A  +AC+RG V VV  +LN  WL+  E D   +T LHVA   G  +IV+EI+K+R 
Sbjct: 104 ENENALFVACQRGKVEVVNYLLNFQWLLTSEVD-GYATSLHVAALGGYAEIVREIMKIRQ 162

Query: 124 SFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKIL 183
            F  + D N C PLH A   G++E T+ LL    D++   +N+G TPLH AAI G V ++
Sbjct: 163 DFAWKRDINGCTPLHLACSKGHLETTRELLKYDADLSSLQDNDGRTPLHWAAIKGRVNVI 222

Query: 184 EAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHL 243
           +  ++ S      +T +G+TV HL ++  +++A  +L E+ + T L+++ D+ GNT LHL
Sbjct: 223 DEVLSVSLEPAEMITKNGETVLHLGVKNNQFDAVKYLMETLNITNLINRPDKDGNTALHL 282

Query: 244 AILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEE------- 296
           A       +  Y++K    D N  N   QT LDV++   +       L ++++       
Sbjct: 283 ATAGKLSAMVIYLLKLNG-DVNVINRKGQTVLDVVESDVSNSGALLILPAIQDAGGKRGD 341

Query: 297 --PNGSPKHLQQYKDLSKRQIKELSKRY------------KSRRDKKNELQREALQNARN 342
             P GS +  Q  ++ +        K+             + RR+K+ E Q E L+NARN
Sbjct: 342 QLPPGSTEIHQIVQEYNPSLPSSPPKKVLDSPNHHHRRKHRRRREKQLEDQSEGLRNARN 401

Query: 343 TIILVAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFLSLSIV 402
           TI +V+VLIATVT+A GI+PPGG  Q   L G++ +G+ T+FKVF + N +ALF SL IV
Sbjct: 402 TITVVSVLIATVTFAAGINPPGGFNQ---LSGRTIMGKHTSFKVFAVCNVVALFTSLGIV 458

Query: 403 IILVSIIPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTG--WVADSLL 460
           I+LVSIIPF RK +M+LLV+THK+MWVS+SFMA AYIAA    +P+G+G G  WV  ++ 
Sbjct: 459 IVLVSIIPFRRKSMMKLLVVTHKIMWVSMSFMAAAYIAAMWTVLPHGQGWGGVWVLVAIA 518

Query: 461 AVGAGTLGSLFVYLGVALTRHWLRKLKWRA-ENGRKQGRVSVTRERIQSRNTKFKTKNKS 519
           A+G G    +F+ LG  L +HW+RK +WR  ++ RK    S +  RI+    + KT  + 
Sbjct: 519 AIGGGCTVGIFMGLGFLLAQHWIRKSEWRKNKDKRKDASPSSSISRIE----ELKTIKRG 574

Query: 520 QSEST-NSDVDSSTSVGYYAY 539
             +ST NSDVDSS   GY+ Y
Sbjct: 575 DCDSTSNSDVDSSDQGGYHLY 595

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142976|ref|XP_002324803.1| predicted protein [Populus trichocarpa] gi|222866237|gb|EEF03368.1| predicted protein [Populus trichocarpa]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/523 (42%), Positives = 320/523 (61%), Gaps = 27/523 (5%)

Query: 7   FGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQ 66
           FGH+EL  EI++L P+L+   NEK+ETPLHEACR+G  E+  LL++T+ ++   +NQ+  
Sbjct: 46  FGHVELAKEIVRLRPELMFEENEKMETPLHEACREGKMEMVRLLVETDPWLVYKVNQDNG 105

Query: 67  SAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFC 126
           SA  +AC RG ++VV  +L+   L+  E D   +T LH A S G  DIVKEILK RP F 
Sbjct: 106 SALTVACERGKLDVVDYLLSFPGLLMLELD-GFTTSLHAAASGGHTDIVKEILKARPDFA 164

Query: 127 EQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF 186
            + D   C PLH   + G++E+T+ LL    +++   +N+G TPLH AAI G V +++  
Sbjct: 165 WKNDLQGCSPLHLCCKKGHLEVTRELLRFDAELSSLQDNDGRTPLHWAAIKGRVNVIDEI 224

Query: 187 IASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAIL 246
           +++S  S   +T  G+TV HL ++  +Y A  +L E  + T L+ + D  GNT LHLA  
Sbjct: 225 LSTSLESAEVITKHGETVLHLGVKNNQYEAVKYLTEMLNITKLVDKPDNDGNTALHLATA 284

Query: 247 RNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSP----- 301
                +  Y++ K  VD N  N   QTA DV++   +       L ++++  G       
Sbjct: 285 GKLSTMVIYLL-KLGVDVNAINQRGQTAFDVVESDVSNSGVLLILPALQDAGGKRSDQLP 343

Query: 302 ------KHLQQYKDL----SKRQIKELSK----RYKSRRDKKNELQREALQNARNTIILV 347
                 + +QQ K L    +KR  +  +K        RR+K+ ELQ E L+NARNTII+V
Sbjct: 344 PSSIEIQQIQQEKSLLSSSTKRMTESTTKHHRRSQHRRREKQLELQTEGLRNARNTIIVV 403

Query: 348 AVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFLSLSIVIILVS 407
           AVLIATVT+A GI+PPGG  Q+    G+ST GR ++FK+F + N +ALFLSL  V+ LVS
Sbjct: 404 AVLIATVTFAAGINPPGGFRQD---TGESTTGRHSSFKIFVVCNIVALFLSLGTVVFLVS 460

Query: 408 IIPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTG--WVADSLLAVGAG 465
           I+PF+RK +M LL +THK+MW+SISFMA  YIAA    +P+GRG G  WV  +++A+G G
Sbjct: 461 IVPFQRKSMMILLTVTHKVMWLSISFMAAGYIAAMWTILPHGRGRGRQWVFVAIVAIGGG 520

Query: 466 TLGSLFVYLGVALTRHWLRKLKW-RAENGRKQGRVSVTRERIQ 507
              ++FV LGV L +HWLRK +W R++  RK    S +  R++
Sbjct: 521 CTMAIFVGLGVLLAKHWLRKWEWRRSKEKRKNESPSSSVSRVE 563

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448162|ref|XP_004141835.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/594 (37%), Positives = 335/594 (56%), Gaps = 74/594 (12%)

Query: 7   FGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQ 66
            GH+E+  E+++LCP++V A N+ +ETP HEACR G+ +I  +L +TN  V    N E  
Sbjct: 45  LGHVEMAQEVVELCPEMVVAENKNMETPFHEACRYGHVKIVKVLFETNHEVVYKRNVENL 104

Query: 67  SAFLLACRRGHVNVVKLMLNQSWLME-FEEDRDESTPLHVAISRGKIDIVKEILKVRPSF 125
           S F +AC  GH++VV  +L +  +    EE+  + T +HVA S G  D+V+E++   P  
Sbjct: 105 SGFFVACSNGHLDVVNFLLVEIGISSCLEENASDQTCIHVAASNGHTDVVRELVNASPRV 164

Query: 126 CEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEA 185
            E AD N  L LH A   G  E+   LL    +MA+ YN NGYTPLH A +NG V +LE 
Sbjct: 165 AEMADLNGNLALHIACSKGVREMVWTLLQRDANMAMHYNKNGYTPLHLATMNGKVAVLED 224

Query: 186 FIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAI 245
           F+  + ++F   T +G+T+FHL +R+G+Y+AF++L    +   LLH +D++ NT+LHLAI
Sbjct: 225 FLMMAASAFYQSTKEGETIFHLVVRYGRYDAFVYLFHLCNGGNLLHSRDRYSNTLLHLAI 284

Query: 246 LRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVL-----------------KESGTKEA-- 286
             + YQ+AEY+I+K+ V+ N RNY  QTA D+L                 K  G + A  
Sbjct: 285 ATHRYQIAEYLIRKSGVEINSRNYRGQTAFDILDQTQDTPETRRLEDLLIKSGGRRNAEI 344

Query: 287 ------FSSELQS------------------VEE------PNGSPKHLQQYKDLSKRQIK 316
                  ++E+ S                  V++      P  +P      +   K+  +
Sbjct: 345 LSPSQDNTTEISSTYRTNAAASSSSPSRWSHVDDKSQELLPPTTPFRSVSKQSNPKKSTQ 404

Query: 317 ELSKRYKSRRDKKNELQ--REALQNARNTIILVAVLIATVTYAGGISPPGGVYQEGPLK- 373
             +  Y S   K++ ++   E LQNARNTI+LV++LIATVT+A GI+PPGGV Q+   K 
Sbjct: 405 ITTTNYNSSPAKRHRVKIYTEGLQNARNTIVLVSILIATVTFAAGINPPGGVNQQLDEKS 464

Query: 374 ----GKSTVGRTTAFKVFEISNNIALFLSLSIVIILVSIIPFERKKLMRLLVITHKLMWV 429
               G+STVG TTAFK+F + N +ALF+SL++VI+L+S+IPF RK  + ++ +  K+MW 
Sbjct: 465 KKKLGQSTVGDTTAFKIFTVCNVVALFISLALVIVLISVIPFRRKPQILVVTVAQKVMWA 524

Query: 430 SISFMATAYIAASRITVPNGRGTG----WVADSLLAVGAGTLGSLFVYLGVALTRHWLRK 485
           + +FMAT Y+AA  + +P+    G    WVA  ++AV  G LG +F+ L V L  H L K
Sbjct: 525 AAAFMATGYVAAVWVVIPHNEEEGEKGKWVAVVVVAVSGGILGIVFIGLSVMLIEHHLHK 584

Query: 486 LKWRAENGRKQGRVSVTRERIQSRNTKFKTKNKSQSESTNSDVDSSTSVGYYAY 539
           LK R             R RI+    +  TK + + ES NSD++     GY ++
Sbjct: 585 LKRRK------------RMRIREGKEESATKMEDE-ESLNSDIEHCCERGYRSF 625

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430027|ref|XP_002281561.1| PREDICTED: ankyrin repeat-containing protein At3g12360 [Vitis vinifera]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/568 (41%), Positives = 328/568 (57%), Gaps = 47/568 (8%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
           A   GH EL  EI+KL P+L AA NEKL+TPLHEACR+G AEI  LLL+T+  +A  +N+
Sbjct: 43  AARLGHPELAAEILKLSPELAAARNEKLDTPLHEACREGRAEIVKLLLETDPLIAGKVNR 102

Query: 64  ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRP 123
           + ++A  + C RG ++VVK +LN  WL+  E D   +T LH+A SRG  DIVKEILKVRP
Sbjct: 103 DNETALYVGCDRGRLDVVKQLLNHPWLLALELD-GFTTSLHLAASRGHTDIVKEILKVRP 161

Query: 124 SFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKIL 183
            F  + D + C+PLH A   G++E+T  LL   PD+    + +G TPLH A I GH+ I+
Sbjct: 162 DFAREKDLDGCIPLHLACSKGHLEVTSELLRLDPDLTSLQDKDGLTPLHWAIIKGHLNII 221

Query: 184 EAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHL 243
           +  +A         T  G+TV HL ++  +Y A  +L E  +FT LL+  D+ GNT+LHL
Sbjct: 222 DKILAIGLHLAQTTTKHGETVLHLGVKNNRYEAVQYLMEKLNFTQLLNTPDKNGNTILHL 281

Query: 244 AILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDV-----------------LKESGTKEA 286
           A       + +Y++ +  VD N +N    T+LDV                 L ++G K  
Sbjct: 282 AAAGKLTTMVKYLL-ELGVDVNAQNCKGFTSLDVITSDASNSKAGLEIVTALCQAGAKRC 340

Query: 287 -----FSSELQSVEEPN---------GSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNEL 332
                 S E+Q   +P           SP      K +    ++  +K++   R K  + 
Sbjct: 341 SQLSPASPEIQENHQPTSGVLNSLNVASP----WPKVMPDSPVQHHNKKHDQSRKKLLD- 395

Query: 333 QREALQNARNTIILVAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNN 392
           Q E L+NARN   +VAVL+ATVT++ GI+PPGG  Q+    GKS +G+ T FKVF + N 
Sbjct: 396 QNEGLRNARNKFTVVAVLVATVTFSAGINPPGGFNQD---TGKSMLGKQTPFKVFMVCNI 452

Query: 393 IALFLSLSIVIILVSIIPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGT 452
           +ALFLSLSIVI+LVS+IP+ R  +MRLLV THK+MWVS+ FMA AY+AA+ + +P G G+
Sbjct: 453 LALFLSLSIVIVLVSVIPYRRTSMMRLLVFTHKVMWVSMIFMAAAYMAATWMIIPPGPGS 512

Query: 453 GWVADSLLAVGAGTLGSLFVYLGVALTRHWLRKLKWRAENGRKQGRVSVTRERIQSRNTK 512
            W    LL +G G   ++F+  G+ L R + RK + R  N +  G      + I S   +
Sbjct: 513 RWEFAVLLCLGGGCTMAIFLITGMVLVRQF-RKYQLRKVNAKTYG----GPDNIISHAGE 567

Query: 513 FKTKNKSQSEST-NSDVDSSTSVGYYAY 539
            +   +   EST NSDVDSS   GY+ Y
Sbjct: 568 MQMIKRHGYESTCNSDVDSSDQGGYHLY 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081888|emb|CBI20893.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 231/560 (41%), Positives = 324/560 (57%), Gaps = 47/560 (8%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
           A   GH EL  EI+KL P+L AA NEKL+TPLHEACR+G AEI  LLL+T+  +A  +N+
Sbjct: 43  AARLGHPELAAEILKLSPELAAARNEKLDTPLHEACREGRAEIVKLLLETDPLIAGKVNR 102

Query: 64  ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRP 123
           + ++A  + C RG ++VVK +LN  WL+  E D   +T LH+A SRG  DIVKEILKVRP
Sbjct: 103 DNETALYVGCDRGRLDVVKQLLNHPWLLALELD-GFTTSLHLAASRGHTDIVKEILKVRP 161

Query: 124 SFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKIL 183
            F  + D + C+PLH A   G++E+T  LL   PD+    + +G TPLH A I GH+ I+
Sbjct: 162 DFAREKDLDGCIPLHLACSKGHLEVTSELLRLDPDLTSLQDKDGLTPLHWAIIKGHLNII 221

Query: 184 EAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHL 243
           +  +A         T  G+TV HL ++  +Y A  +L E  +FT LL+  D+ GNT+LHL
Sbjct: 222 DKILAIGLHLAQTTTKHGETVLHLGVKNNRYEAVQYLMEKLNFTQLLNTPDKNGNTILHL 281

Query: 244 AILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDV-----------------LKESGTKEA 286
           A       + +Y++ +  VD N +N    T+LDV                 L ++G K  
Sbjct: 282 AAAGKLTTMVKYLL-ELGVDVNAQNCKGFTSLDVITSDASNSKAGLEIVTALCQAGAKRC 340

Query: 287 -----FSSELQSVEEPN---------GSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNEL 332
                 S E+Q   +P           SP      K +    ++  +K++   R K  + 
Sbjct: 341 SQLSPASPEIQENHQPTSGVLNSLNVASP----WPKVMPDSPVQHHNKKHDQSRKKLLD- 395

Query: 333 QREALQNARNTIILVAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNN 392
           Q E L+NARN   +VAVL+ATVT++ GI+PPGG  Q+    GKS +G+ T FKVF + N 
Sbjct: 396 QNEGLRNARNKFTVVAVLVATVTFSAGINPPGGFNQD---TGKSMLGKQTPFKVFMVCNI 452

Query: 393 IALFLSLSIVIILVSIIPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGT 452
           +ALFLSLSIVI+LVS+IP+ R  +MRLLV THK+MWVS+ FMA AY+AA+ + +P G G+
Sbjct: 453 LALFLSLSIVIVLVSVIPYRRTSMMRLLVFTHKVMWVSMIFMAAAYMAATWMIIPPGPGS 512

Query: 453 GWVADSLLAVGAGTLGSLFVYLGVALTRHWLRKLKWRAENGRKQGRVSVTRERIQSRNTK 512
            W    LL +G G   ++F+  G+ L R + RK + R  N +  G      + I S   +
Sbjct: 513 RWEFAVLLCLGGGCTMAIFLITGMVLVRQF-RKYQLRKVNAKTYG----GPDNIISHAGE 567

Query: 513 FKTKNKSQSEST-NSDVDSS 531
            +   +   EST NSDVDSS
Sbjct: 568 MQMIKRHGYESTCNSDVDSS 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	539
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.871	0.820	0.386	2.2e-82
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.873	0.787	0.364	3.3e-79
TAIR|locus:2012873	578	AT1G10340 "AT1G10340" [Arabido	0.846	0.788	0.335	1.4e-55
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.855	0.767	0.336	2.3e-55
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.858	0.865	0.292	2.3e-46
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.799	0.793	0.279	6.1e-39
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.851	0.777	0.268	1.4e-37
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.751	0.761	0.247	1.1e-34
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.794	0.705	0.263	7.4e-31
TAIR|locus:2157548	480	AT5G54700 "AT5G54700" [Arabido	0.567	0.637	0.305	1.9e-28

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 191/494 (38%), Positives = 282/494 (57%)

Query:     4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
             AT  GH E+V  IIKLCP LV   N   +TPLH A R G+A I A +L +     T +N 
Sbjct:    61 ATELGHKEIVEAIIKLCPSLVGVTNLDGDTPLHFAARWGHATIVAQILASGYAEFTPVNG 120

Query:    64 ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKI-DIVKEILKVR 122
               ++AF++ACR  + +V  L+L ++  +   E        +     G+  DI + +L+  
Sbjct:   121 RGETAFVVACRYTNPDVASLILEETSSITIGE-------FYATFVLGEYTDIARRMLERF 173

Query:   123 PSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKI 182
             P     AD     PLH+A    N+EITK+LL     +A + N +G+TPLH AA+   + I
Sbjct:   174 PKLAWNADGELSTPLHHACNANNLEITKMLLEIDESLAERVNKDGFTPLHLAAMKCSIPI 233

Query:   183 LEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLH 242
             L+ F   +P  F+ LT   +TVFHLA       AF F+AES D   LLHQ D++GNTVLH
Sbjct:   234 LKEFSDKAPRYFDILTPAKETVFHLAAEHKNILAFYFMAESPDRNNLLHQVDRYGNTVLH 293

Query:   243 LAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLK---ESGTKEA----FSS-ELQSV 294
              A++ + Y +   I  +T +D + +N     A+D++    E  +K +    F + +++S+
Sbjct:   294 TAVMSSCYSVIVSITYETTIDLSAKNNRGLKAVDLINVDDEDYSKISRWLRFDAKQIRSL 353

Query:   295 EEPNGSP--KHLQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQNARNTIILVAVLIA 352
              +PN     K++    +  K QI E      S+R+ K  +  EAL NARNTI +VAVLIA
Sbjct:   354 SDPNHQQGNKNMGVLSEYKKMQIFETP----SKRESK--MHAEALLNARNTITIVAVLIA 407

Query:   353 TVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFXXXXXXXXXXXXXPFE 412
             +V +  GI+PPGGVYQEGP KGKST GRT AF+VF ISNNIALF             P+ 
Sbjct:   408 SVAFTCGINPPGGVYQEGPYKGKSTAGRTLAFQVFSISNNIALFTSLCIVILLVSIIPYR 467

Query:   413 RKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVGAGTLGSLFV 472
              + L   L +TH+++WV+++ MA AY++A+ I +P+  G  W+  ++L++    LG LF 
Sbjct:   468 TRPLKNFLKLTHRILWVAVASMALAYVSAASIIIPHVEGKRWLFTTVLSISTLMLGGLFA 527

Query:   473 YLGVALTRHWLRKL 486
             ++   + RHWL+K+
Sbjct:   528 FMTYKVIRHWLKKM 541

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 182/499 (36%), Positives = 285/499 (57%)

Query:    11 ELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFL 70
             E  T++I LCP LV+  N    TPLH A   GN  I   +L+T       +N++ Q+AF+
Sbjct:    82 EYATKVIDLCPSLVSVTNVDGNTPLHLAAEIGNINILWKMLETGEAECMKINKQGQTAFI 141

Query:    71 LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD 130
             LAC   +VN  ++++  +  M   E       L+ A S  +  I+  IL+  P+    AD
Sbjct:   142 LACLNNNVNSARILVEGTSSMTMVE-------LNAAFSEQQQVIIDSILEKFPNLILDAD 194

Query:   131 KNRCLPLHYASRIGNVEITKLLLNS--KPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188
             + +   LH A + GN+E+ + LL+     ++A + + +G TPLH+A ING V+IL+ F+ 
Sbjct:   195 EEQSTLLHKACKSGNLEMARTLLDVDVNQEIAEKVDKDGLTPLHRAVINGSVEILKEFLC 254

Query:   189 SSPTSFNCLTTDG--DTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAIL 246
              +P+SFN +TT G  +TVFHLA ++ K  AFIF+A+S +   LL+  D   NTVLH+A  
Sbjct:   255 KAPSSFN-ITTQGTIETVFHLAAKYQKTKAFIFMAQSANIRQLLYSLDAEDNTVLHVAAS 313

Query:   247 RNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEA-----FSSELQSVEEPNGSP 301
              ++  L  +I+ +T +D   +N     A+D++ + G         F  E + ++ P    
Sbjct:   314 VDSTSLVRHILSETTIDVTLKNKKGFAAVDLIDKEGVDFPLLSLWFRDEAEKIQRPARYV 373

Query:   302 KHLQQYKDL-----------SKRQIKELSKRYKSRRDKKNELQREALQNARNTIILVAVL 350
             K   +  +L           S+ +  +L +  +  R+K+ E+  E+LQNARNTI +VAVL
Sbjct:   374 KFAHEPVELIRNTNNGEKLSSESRAMDLLREGRDPRNKEREMHSESLQNARNTITIVAVL 433

Query:   351 IATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFXXXXXXXXXXXXXP 410
             IA+V +  GI+PPGGV+Q+GP  GK+T GRT AFK+F ++NNIALF              
Sbjct:   434 IASVAFTCGINPPGGVHQDGPFIGKATAGRTLAFKIFSVANNIALFTSLSIVTLLVSIIS 493

Query:   411 FERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVGAGTLGSL 470
             +  K L   +VI HK+MW++++ MATAY A++ ITVP+  G+ W+  +  A+ +  LGS+
Sbjct:   494 YRTKALKMCVVIAHKMMWLAVASMATAYAASAWITVPHNEGSKWLVYTTSAIASVALGSM 553

Query:   471 FVYLGVALTRHWLRKLKWR 489
             FVY+   + +H L+K K R
Sbjct:   554 FVYVSFMMVKHILKKDKLR 572

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012873 AT1G10340 "AT1G10340" [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 169/504 (33%), Positives = 257/504 (50%)

Query:     8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
             G + +V ++++   ++ +A N    TPLH ACR  + E + L+ +    +   L +    
Sbjct:    82 GDVNIVMQMLETGLEVCSARNINNHTPLHLACRSNSIEAARLIAEKTQSIG--LGE---- 135

Query:    68 AFLLACRRGHVNVVKLMLN--------QSWLMEFEEDRDESTPLHVAISRGKIDIVKEIL 119
               +LA   G  ++V  +L         ++W++E   D  +ST LH A  +G  ++   +L
Sbjct:   136 -LILAISSGSTSIVGTILERFPDLAREEAWVVE---DGSQSTLLHHACDKGDFELTTILL 191

Query:   120 KVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH 179
              +     E  + N   PLH A   G+V I +  L+  P        +  T  H AA N +
Sbjct:   192 GLDQGLEEALNPNGLSPLHLAVLRGSVVILEEFLDKVPLSFSSITPSKETVFHLAARNKN 251

Query:   180 VKILEAFIASS---PTSFNCLTTD--GDTVFHLALRFGKYNA----FIFLAESFDFTGLL 230
             +     F+A S    +      TD  G+TV H+A     ++A    +I      D T   
Sbjct:   252 MDAF-VFMAESLGINSQILLQQTDESGNTVLHIAASVS-FDAPLIRYIVGKNIVDITS-- 307

Query:   231 HQQDQFGNTVLHLAILR-NNYQL-AEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFS 288
               +++ G     L      +++L + ++   T+  +   +  N     V +  G++E   
Sbjct:   308 --KNKMGFEAFQLLPREAQDFELLSRWLRFGTETSQELDSENN-----VEQHEGSQEVEV 360

Query:   289 SELQSVEEPNGSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQNARNTIILVA 348
               L  +   N S   + + K  SK Q  E     + R++ + ++  EALQNARNTI +VA
Sbjct:   361 IRLLRIIGINTS--EIAERKR-SKEQEVE-----RGRQNLEYQMHIEALQNARNTIAIVA 412

Query:   349 VLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFXXXXXXXXXXXX 408
             VLIA+V YAGGI+PPGGVYQ+GP +GKS VG+TTAFKVF I NNIALF            
Sbjct:   413 VLIASVAYAGGINPPGGVYQDGPWRGKSLVGKTTAFKVFAICNNIALFTSLGIVILLVSI 472

Query:   409 XPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVGAGTLG 468
              P++RK L RLLV TH++MWVS+ FMATAYIAAS +T+P+  GT W+  +++AV  G L 
Sbjct:   473 IPYKRKPLKRLLVATHRMMWVSVGFMATAYIAASWVTIPHYHGTQWLFPAIVAVAGGALT 532

Query:   469 SLFVYLGVALTRHWLRKLKWRAEN 492
              LF YLGV    HW +K+    +N
Sbjct:   533 VLFFYLGVETIGHWFKKMNRVGDN 556

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 164/487 (33%), Positives = 236/487 (48%)

Query:     8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLL-KTNLFVATLLNQERQ 66
             G + +V +++    +L +A N K +TPLH A      E +  ++ KTN      LN    
Sbjct:    82 GDVNIVMQMLDTGLELYSARNNKNQTPLHLAFVSIFMEAAKFIVEKTNSVDLDELNFALS 141

Query:    67 SAFLLACRRGHV--NVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPS 124
             S     C  G +     +L    +W +E   D   ST LH A  +G +++   +L +   
Sbjct:   142 SGS--TCIVGIILERFPELARKNAWEVE---DGSRSTLLHYACDKGDLELTSILLGLNQG 196

Query:   125 FCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH----V 180
               E  +     PLH A + G+V I +  ++  P        +  T  H AA N +    V
Sbjct:   197 LEEALNSKGLSPLHLAVQRGSVIILEEFMDKSPLSFCVRTPSKETVFHLAARNKNTDAFV 256

Query:   181 KILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTV 240
              + E    SSP         G+TV H+A      +  I          +   ++  G   
Sbjct:   257 FMAENLGTSSPILLKKKDQQGNTVLHIAASVSCGSPLIRYIVGKKIIDI-RDRNNMGYRA 315

Query:   241 LHLAILRNNYQLAEYIIKKTKVD-KNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNG 299
              HL  L    Q  E+I    + D K      ++ A       G  E     L+ +E    
Sbjct:   316 YHL--LPRQAQDYEFISSYLRCDTKTSEEVDSKKAERNEPHIGHSEVIRL-LKLIEI--- 369

Query:   300 SPKHLQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQNARNTIILVAVLIATVTYAGG 359
             S   + + K   K  +K      +  +  ++E+  EALQNARNTI +VAVLIA+V+YAGG
Sbjct:   370 STSEIAERKKSKKHHVK------RGHKSLEHEMHIEALQNARNTIAIVAVLIASVSYAGG 423

Query:   360 ISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFXXXXXXXXXXXXXPFERKKLMRL 419
             I+PPGGVYQ+GP KGKS VG T AFKVF I NNIALF             P++RK L +L
Sbjct:   424 INPPGGVYQDGPWKGKSLVGNTAAFKVFAICNNIALFTSLCIVILLVSIIPYQRKPLKKL 483

Query:   420 LVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVGAGTLGSLFVYLGVALT 479
             LV TH++MWVS+ FMATAY+AAS +T+P+  GT W+   +++V  G+L  LF YLGV   
Sbjct:   484 LVATHRMMWVSVGFMATAYVAASLVTIPHFPGTRWLFPVIISVAGGSLTVLFSYLGVETI 543

Query:   480 RHWLRKL 486
              HW +K+
Sbjct:   544 SHWFKKM 550

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 147/502 (29%), Positives = 233/502 (46%)

Query:     4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
             A   G+ ELV +I+++ P LV++ N K +TPLH A R G+  I  L+L++       L +
Sbjct:    34 AVKLGNEELVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSILLLMLESTAESIESLEE 93

Query:    64 ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRP 123
                +   LA           M+N          +D  TPLH A+  G ++ +   +   P
Sbjct:    94 TVPNDLKLA----------EMVN----------KDGFTPLHCAVMNGSVETLTAFINKAP 133

Query:   124 -SFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQY--NNNGYTPLHQAAINGHV 180
              SF     +      H A+R   +E    +  +     L Y  +  G T LH AA  G +
Sbjct:   134 LSFDSVTLQTSETVFHLAARHKKMEAFIFMAKNANLRRLLYELDGEGNTVLHAAASVGFL 193

Query:   181 KILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNA-FIFLAESFDFTGLLHQQDQFGNT 239
              ++   +         +TT  D  F       K +  F  ++        + Q+      
Sbjct:   194 SLVSYIVHEIKIE---VTTQNDKGFEAVDLLNKDDEDFKMMSMILGHDSEIVQRAASSPR 250

Query:   240 VLHLAILRNNYQLAEY-----IIKKTKVDKNCRNYTNQT--ALDV-LKESGT-KEAFSSE 290
               +    +   + +E      ++     ++N  N  N+   A+D+  KE G  K    ++
Sbjct:   251 DAYTPSTQTEVENSEIHHEQGLVAPEIKEENVTNENNKVFEAIDLPTKEDGDLKMLAGTD 310

Query:   291 LQSVEEPNGSPKHLQQYKDLS---KRQIKELSKRYKSRRDKKNELQREALQNARNTIILV 347
              ++ + P+     L    +        +  +    +  R K+ E+Q EALQNARNTI +V
Sbjct:   311 SETFQLPSSRTGILTPETETEMVISNTLHGIRHGLRESRIKEKEMQSEALQNARNTITVV 370

Query:   348 AVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFXXXXXXXXXXX 407
             AVLIA+VT+  G++PPGGVYQ+G   GK+T G T AFKVF +SN+IALF           
Sbjct:   371 AVLIASVTFTCGLNPPGGVYQDGHFIGKATAGGTVAFKVFSVSNSIALFTSLCIVILLLS 430

Query:   408 XXPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVGAGTL 467
               PF  K L   L+ITHK++W+++  MA+AY+A + +T+P+ RG  WV  + L +    L
Sbjct:   431 IIPFRTKSLKTFLIITHKMIWLAVIAMASAYVAGTCVTLPHSRGNKWVLKATLVIACVML 490

Query:   468 GSLFVYLGVALTRHWLRKLKWR 489
             G +F++L   L  H  RK K R
Sbjct:   491 GGMFIFLWFKLANHMSRKKKMR 512

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 129/462 (27%), Positives = 218/462 (47%)

Query:    62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFE-EDRDESTPLHVAISRGKIDIVKEILK 120
             NQ  ++A  +A   G V +VK M+N   L   E + R+     H+A  +G +D++K + +
Sbjct:    63 NQSGETALYVAAEYGDVEIVKEMINCYDLALVEIKARNGFDAFHIAAKQGDLDVLKVLAE 122

Query:   121 VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHV 180
                      D +    LH A+  G+ E+   LL     +A    +NG T LH A+ NGHV
Sbjct:   123 AHSELAMTVDLSNTTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTALHSASRNGHV 182

Query:   181 KILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTV 240
             K+++A +AS P     +   G T  H+A++         L ++ D + + +  D  GNT 
Sbjct:   183 KVIKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELIKA-DRSSI-NIADTKGNTA 240

Query:   241 LHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE-AFSSELQSVE---- 295
             LH+A  +   Q+ + ++     D    N + +TALD  ++ G  E A   +   V     
Sbjct:   241 LHIAARKGRSQIVKLLLANNMTDTKAVNRSGETALDTAEKIGNPEVALILQKHGVPSAKT 300

Query:   296 -EPNG-SP-KHLQQ-YKDLSKRQIKELS------KRYKSRRDKKNELQREALQNARNTII 345
              +P+G +P + L+Q   D+      +L       KR +    + N++  E L NA N+  
Sbjct:   301 IKPSGPNPARELKQTVSDIKHEVHNQLEHTRLTRKRVQGIAKQLNKMHTEGLNNAINSTT 360

Query:   346 LVAVLIATVTYAGGISPPGGVYQE------GPLKGKSTVGRTTAFKVFEISNNIALFXXX 399
             +VAVLIATV +A   + PG   ++      G   G++ +  TT F +F I ++IALF   
Sbjct:   361 VVAVLIATVAFAAIFTVPGQYVEDTSKIPDGHSLGEANIASTTPFIIFFIFDSIALFISL 420

Query:   400 XXXXXXXXXXPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSL 459
                         E K   +++ + +KLMW++   ++ A++A S + V  G    W+A  +
Sbjct:   421 AVVVVQTSVVVIESKAKKQMMAVINKLMWLACVLISVAFLALSFVVV--GEEEKWLAIWV 478

Query:   460 LAVGAGTLGSLFVYLGVALTRHWLRKLKWRAENGRKQGRVSV 501
              A+GA T+  +   LG     +W+ + K  A N R   R S+
Sbjct:   479 TAIGA-TI--MITTLGTMC--YWIIQHKIEAANLRNIRRSSI 515

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.4e-37, P = 1.4e-37
 Identities = 133/496 (26%), Positives = 239/496 (48%)

Query:    22 QLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVV 81
             Q++  +N ++E  L  +  + +AE++ +       +   +N+  ++A   A  +GH++VV
Sbjct:    92 QILKDINSQMEGIL--SGEEFDAEVAEIRAS----IVNEVNELGETALFTAADKGHLDVV 145

Query:    82 KLMLNQSWLMEF-EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYA 140
             K +L  S      +++R    PLH+A  +G   IV+ +L    +  +    +   PL  A
Sbjct:   146 KELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSA 205

Query:   141 SRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTD 200
             +  G+ E+   LL+   ++     +N    LH AA  GHV++++A ++  P     +   
Sbjct:   206 AMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKK 265

Query:   201 GDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKT 260
             G T  H+A++ G+ +  + L    D   ++ Q D+  NT LH+A  +   ++ E ++   
Sbjct:   266 GQTALHMAVK-GQSSEVVKLLLDAD-PAIVMQPDKSCNTALHVATRKKRAEIVELLLSLP 323

Query:   261 KVDKNCRNYTNQTALDV-----LKESGT--KE--AFSSELQSVE--EPNGSPKH-LQQYK 308
               + N     ++TALD+     L E  +  KE  A S  L++ E  +P    +  + Q K
Sbjct:   324 DTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIK 383

Query:   309 D---LSKRQIKELSKRYKSRRDKKNELQREALQNARNTIILVAVLIATVTYAGGISPPGG 365
             +   +   Q K  +K   +   +  +L RE + NA N++ +VAVL ATV +A   + PGG
Sbjct:   384 NDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGG 443

Query:   366 VYQEGPLKGKSTVGRTTAFKVFEISNNIALFXXXXXXXXXXXXXPFERKKLMRLLVITHK 425
                +G       VGR + FK+F I N +ALF               E K   R++ + +K
Sbjct:   444 DNNDG---SAVVVGRAS-FKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINK 499

Query:   426 LMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVG----AGTLGSLFVYLGVALTRH 481
             LMW++    + A++A+S I V  GR   W A+ +  VG    AG LG++  Y+ V   R 
Sbjct:   500 LMWLASMCTSVAFLASSYIVV--GRKNEWAAELVTVVGGVIMAGVLGTMTYYV-VKSKR- 555

Query:   482 WLRKLKWRAENGRKQG 497
               R ++ + ++ R+ G
Sbjct:   556 -TRSMRKKVKSARRSG 570

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 106/428 (24%), Positives = 202/428 (47%)

Query:    62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFE-EDRDESTPLHVAISRGKIDIVKEILK 120
             N   ++A  ++      ++ + ++  S L   +   + +    HVA  RG + IVKE+L+
Sbjct:    56 NDAGETAVYISAAENLEDIFRYLIRFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKELLR 115

Query:   121 VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHV 180
             + P  C   D +   PL+ A+   ++EI   +L+  P  A+    NG T LH A   G +
Sbjct:   116 LWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLL 175

Query:   181 KILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTV 240
             +I++A I             G T  H+A++ G+    +      D+T +L+++D+ GNT 
Sbjct:   176 RIVKALIEKDAAIVGVKDKKGQTALHMAVK-GRSLEVVEEILQADYT-ILNERDRKGNTA 233

Query:   241 LHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGS 300
             LH+A  +   Q+   ++  T ++ N  N   +TA+D+  +    E+     +++ E    
Sbjct:   234 LHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAK 293

Query:   301 PKHLQQYKDLS---KRQIKELSKRYKSR---RDKKN-----------ELQREALQNARNT 343
                    +D +   KR + ++    +S+    +K N           +L REA+QN  N+
Sbjct:   294 HGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNS 353

Query:   344 IILVAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFXXXXXXX 403
             I +VAVL A++ +    + PG  + EG   G++ +   T F+VF + N  +LF       
Sbjct:   354 ITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVV 413

Query:   404 XXXXXXPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAVG 463
                    ++ +   +++ + +KLMW + +    A++A +   V  G+G  W+A ++  +G
Sbjct:   414 VQITLVAWDTRAQKKVVSVVNKLMWAACACTFGAFLAIAFAVV--GKGNSWMAITITLLG 471

Query:   464 AGTL-GSL 470
             A  L G+L
Sbjct:   472 APILVGTL 479

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 7.4e-31, P = 7.4e-31
 Identities = 121/459 (26%), Positives = 215/459 (46%)

Query:    57 VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEF-EEDRDESTPLHVAISRGKIDIV 115
             V   +N+  ++    A  +G+++VVK +L  + +    +++      LH+A S+G   IV
Sbjct:   135 VVNEVNELGETPLFTAAEKGNIDVVKELLPYTTIESLMQKNLSGFDALHIACSQGHRSIV 194

Query:   116 KEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYN-NNGYTPLHQA 174
             + +L+  P   +   ++   PL  A+  G+ E+   LL +K    L+ + +NG   LH A
Sbjct:   195 QLLLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELL-AKDSSLLEISRSNGKNALHLA 253

Query:   175 AINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQD 234
             A  GHV I+   +   P         G T  H+A++ G  +  + L    D   ++   D
Sbjct:   254 ARQGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVK-GVSSQVVRLLLRAD-PAIVMLPD 311

Query:   235 QFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSV 294
             +FGNTVLH+A  +   ++   +++    + N     ++TA D+  E  T    ++E++ +
Sbjct:   312 KFGNTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIA-EGLTHSEETAEIKEI 370

Query:   295 EEPNGSPK--HLQQYKDLSKRQIKELSKRY-----KSRRDKKN---------ELQREALQ 338
                 G+ K   L Q +D  ++ + E+ K       ++R+  KN         +L R  + 
Sbjct:   371 LSRCGALKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDGIAKELRKLHRAGIN 430

Query:   339 NARNTIILVAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTTAFKVFEISNNIALFXX 398
             NA N++ +VAVL ATV +A   + PGG    G     + +   T+FK+F I N IALF  
Sbjct:   431 NATNSVTVVAVLFATVAFAAIFTVPGGDDDHGV----AVMVHATSFKIFFIFNAIALFTS 486

Query:   399 XXXXXXXXXXXPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADS 458
                          E K   R++ + +KLMW++      A+I++S I V  GR   + A  
Sbjct:   487 LAVVVVQITLVRGETKTERRVVEVINKLMWLASVCTTVAFISSSYIVV--GRRNRYAAVV 544

Query:   459 LLAVGAGTL-G--SLFVYLGVALTRHWLRKLKWRAENGR 494
             +  +G  T+ G  S+  Y  V   R  + + K + ++ R
Sbjct:   545 VTVIGTVTMTGILSIMTYYVVKSKRTRIVRKKEKKKSAR 583

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2157548 AT5G54700 "AT5G54700" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 108/354 (30%), Positives = 162/354 (45%)

Query:   136 PLHYASRIGNVEITKLLLNSKPDMALQYN--NNGYTPLHQAAINGHVKILEAFIASSPTS 193
             P+  A R  +      L+  KP +  + +  NNG + LH     GH +  +  I   P+ 
Sbjct:     4 PIFNAIRKNDEATFNQLIQEKPSVIEERDKENNGESVLHLVTKIGHQEFAKTIIGICPSL 63

Query:   194 FNCL----------------TTDGDTVFHLALRFGKYNAF-IF---LAESFDFTGLLHQQ 233
                L                  DG T  H A          +F      SFD     H +
Sbjct:    64 STPLDDISEVENDLKLAELVNNDGLTPLHCAAVSNSIKILKVFSHKTPSSFDILTQPHNE 123

Query:   234 DQFGNTVLHLAILRNNYQLAEYIIKKTKVDK---NCRNYTNQTALDVLKESGTKEAFSSE 290
                  TV HLA+   N +  +++ +K  ++K       Y N T L      G+    +S 
Sbjct:   124 -----TVFHLAVRHKNLKAFKFMAQKVHLEKLLYKPDKYGN-TVLHTAASLGS----TSG 173

Query:   291 LQSVEEPNGSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNELQR-EALQNARNTIILVAV 349
             L +V+             D        ++ ++     K+  +   EALQNARNTI +VA+
Sbjct:   174 LAAVD-----------LLDKDDANFPSIALKFGGESHKEESVMHSEALQNARNTITVVAI 222

Query:   350 LIATVTYAGGISPPGGVYQEGPL-KGKSTVGRTTAFKVFEISNNIALFXXXXXXXXXXXX 408
             LIA+VT+A G++PPGG+YQE    KGKS   +T AFK+F +SN+IALF            
Sbjct:   223 LIASVTFAVGMNPPGGIYQESTSSKGKSVAAKTVAFKIFYVSNSIALFTSLWIVILLVSI 282

Query:   409 XPFERKKLMRLLVITHKLMWVSISFMATAYIAASRITVPNGRGTGWVADSLLAV 462
              PF+ K L  +LVITHK+M VS++ +AT+Y+A   I +P+  GT W+  + L +
Sbjct:   283 IPFKPKSLKNVLVITHKMMSVSVAALATSYVAVGWIILPHFEGTKWLLYTTLGI 336

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	539
pfam13962	114	pfam13962, PGG, Domain of unknown function	2e-34
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-24
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-06
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	1e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-05
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	1e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	3e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.001
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.001
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.004

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  125 bits (316), Expect = 2e-34
 Identities = 46/112 (41%), Positives = 67/112 (59%), Gaps = 4/112 (3%)

Query: 334 REALQNARNTIILVAVLIATVTYAGGISPPGGVYQE--GPLKGKST-VGRTTAFKVFEIS 390
            E L+  RN++++VA LIATVT+A G +PPGG +Q+  G   G     G+   FK F +S
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 391 NNIALFLSLSIVIILVSIIPFERKKLMRLLVITHKLMWVSISFMATAYIAAS 442
           N IA   SL  VI+L+ I+P   ++L RLL     L+W+S+  +  A+ A S
Sbjct: 61  NTIAFVASLVAVILLLYIVPSFSRRLPRLL-ALLTLLWLSLLSLMVAFAAGS 111

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 97.1 bits (242), Expect = 5e-24
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 5/128 (3%)

Query: 130 DKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189
           D++   PLH A+  G++E+ KLLL +  D+  + +N+G TPLH AA NGH++I++  +  
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVK-LLLE 61

Query: 190 SPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNN 249
                N    DG+T  HLA R G  +    L +       ++ +D+ G T LHLA    +
Sbjct: 62  KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA---DVNARDKDGRTPLHLAAKNGH 118

Query: 250 YQLAEYII 257
            ++ + ++
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 97.1 bits (242), Expect = 5e-24
 Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 3/128 (2%)

Query: 26  AVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLML 85
           A +E   TPLH A   G+ E+  LLL+    V    + + ++   LA + GH+ +VKL+L
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 86  NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGN 145
            +        D+D +TPLH+A   G +D+VK +LK       + DK+   PLH A++ G+
Sbjct: 61  -EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR-DKDGRTPLHLAAKNGH 118

Query: 146 VEITKLLL 153
           +E+ KLLL
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 78.8 bits (195), Expect = 5e-18
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 4/85 (4%)

Query: 103 LHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQ 162
           LH+A   G +++VK +L+           +    LH A+R GN+EI KLLL    D+  +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 163 YNNNGYTPLHQAAINGHVKILEAFI 187
            + +G T LH AA NG+++I++  +
Sbjct: 58  -DKDGNTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 69  FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ 128
             LA + G++ +VKL+L +   +      D  T LH+A   G ++IVK +L+       +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL---GDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 129 ADKNRCLPLHYASRIGNVEITKLLLNSKPD 158
            DK+    LH A+R GN+EI KLLL    D
Sbjct: 58  -DKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 61.1 bits (149), Expect = 8e-12
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 35  LHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFE 94
           LH A + GN E+  LLL+     A +   +  +A  LA R G++ +VKL+L     +   
Sbjct: 1   LHLAAKNGNLELVKLLLEKG---ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVN-A 56

Query: 95  EDRDESTPLHVAISRGKIDIVKEILKVRPSFC 126
           +D+D +T LH+A   G ++IVK +L+      
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.7 bits (148), Expect = 9e-12
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 41/132 (31%)

Query: 137 LHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNC 196
           LH A++ GN+E+ KLLL    D+ L   +   T LH AA NG+++I++  +         
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLL--------- 48

Query: 197 LTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI 256
                           ++ A +            + +D+ GNT LHLA    N ++ + +
Sbjct: 49  ----------------EHGADV------------NAKDKDGNTALHLAARNGNLEIVKLL 80

Query: 257 IKKTKVDKNCRN 268
           ++    D N ++
Sbjct: 81  LEH-GADINLKD 91

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 63.3 bits (153), Expect = 3e-11
 Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 11/187 (5%)

Query: 80  VVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHY 139
           +V L+L  S  +    D+  +  L +A+          +  +        D +  LPLH 
Sbjct: 20  LVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHS 79

Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA-------SSPT 192
           A+  G+ +I KLLL S  D+  + + +G TPLH AA+NG+       +A       +   
Sbjct: 80  AASKGDDKIVKLLLASGADVNAK-DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD 138

Query: 193 SFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQL 252
             N    DG+T  H A   G  +    L E+       + ++ +G T L  A      +L
Sbjct: 139 VNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD---PNSRNSYGVTALDPAAKNGRIEL 195

Query: 253 AEYIIKK 259
            + ++ K
Sbjct: 196 VKLLLDK 202

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 64.6 bits (157), Expect = 4e-11
 Identities = 67/261 (25%), Positives = 115/261 (44%), Gaps = 33/261 (12%)

Query: 8   GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
           G IE + +IIK     +    ++  TPL +A R G+A+I  L +K    +   +N +   
Sbjct: 12  GDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADI-NHINTKIPH 70

Query: 68  AFLLACRRGHVNVVKLML----NQSWL----MEFE--------------EDRDESTPLHV 105
             L A + G  +++KL++    + S L    +E +              +D +  T LH 
Sbjct: 71  PLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHY 130

Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
           AI +G ++ +K + +         D N C P+H A +    +I KLLL       ++ +N
Sbjct: 131 AIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK-DN 188

Query: 166 NGYTPLHQAAINGHVKILEAFIA-SSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESF 224
           NG +PLH AA  G    ++  I   +     C   +G T  H A+   +    + +  + 
Sbjct: 189 NGESPLHNAAEYGDYACIKLLIDHGNHIMNKC--KNGFTPLHNAIIHNRSAIELLINNA- 245

Query: 225 DFTGLLHQQDQFGNTVLHLAI 245
                ++ QD  G+T LH AI
Sbjct: 246 ----SINDQDIDGSTPLHHAI 262

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 62.1 bits (150), Expect = 7e-11
 Identities = 53/202 (26%), Positives = 76/202 (37%), Gaps = 7/202 (3%)

Query: 99  ESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPD 158
            S  L +      + +V  +L +       +DK   L L  A          LL      
Sbjct: 5   LSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDR 64

Query: 159 MALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK----- 213
                + +G  PLH AA  G  KI++  +AS     N    DGDT  HLA   G      
Sbjct: 65  HLAARDLDGRLPLHSAASKGDDKIVKLLLASGA-DVNAKDADGDTPLHLAALNGNPPEGN 123

Query: 214 YNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQT 273
                 L E+     + + +D+ GNT LH A L  +  + E +++    D N RN    T
Sbjct: 124 IEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA-GADPNSRNSYGVT 182

Query: 274 ALDVLKESGTKEAFSSELQSVE 295
           ALD   ++G  E     L    
Sbjct: 183 ALDPAAKNGRIELVKLLLDKGL 204

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 58.3 bits (140), Expect = 1e-09
 Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 9/143 (6%)

Query: 96  DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASR-----IGNVEITK 150
           D D   PLH A S+G   IVK +L        + D +   PLH A+       GN+E+ K
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLASGADVNAK-DADGDTPLHLAALNGNPPEGNIEVAK 128

Query: 151 LLLNSKPDMAL--QYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLA 208
           LLL +  D+ +    + +G TPLH AA+NG   I+E  + +     N   + G T    A
Sbjct: 129 LLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPA 187

Query: 209 LRFGKYNAFIFLAESFDFTGLLH 231
            + G+      L +      LL 
Sbjct: 188 AKNGRIELVKLLLDKGLHLSLLK 210

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 56.8 bits (136), Expect = 5e-09
 Identities = 41/166 (24%), Positives = 64/166 (38%), Gaps = 43/166 (25%)

Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
            PLH A  +G+ +I  LLL                          VN             
Sbjct: 75  LPLHSAASKGDDKIVKLLL---------------------ASGADVNAK----------- 102

Query: 93  FEEDRDESTPLHVAISRGK-----IDIVKEILKVRPSFC--EQADKNRCLPLHYASRIGN 145
              D D  TPLH+A   G      I++ K +L+           D++   PLH+A+  G+
Sbjct: 103 ---DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGD 159

Query: 146 VEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSP 191
            +I +LLL +  D     N+ G T L  AA NG +++++  +    
Sbjct: 160 ADIVELLLEAGADPN-SRNSYGVTALDPAAKNGRIELVKLLLDKGL 204

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 8   GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
           GH+E+V  +++     V A ++   TPLH A R GN ++  LLLK    V    +++ ++
Sbjct: 51  GHLEIVKLLLEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRT 108

Query: 68  AFLLACRRGHVNVVKLML 85
              LA + GH+ VVKL+L
Sbjct: 109 PLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 56.5 bits (136), Expect = 2e-08
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 3/169 (1%)

Query: 31  LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWL 90
           +E+ LH+A  +G+ +    LL    F   +  ++  +   LA     ++++KL++ +   
Sbjct: 68  IESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD 127

Query: 91  MEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITK 150
            +   + D+ +PLH+A+  G I  ++ ++  +    +  D   C PL  A   G++ I K
Sbjct: 128 PDI-PNTDKFSPLHLAVMMGDIKGIELLIDHKACL-DIEDCCGCTPLIIAMAKGDIAICK 185

Query: 151 LLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           +LL+S  ++     N     L  A  N  + I+  FI       N +  
Sbjct: 186 MLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC-NIMFM 233

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
            LH A+  G +E+ K LL    D+    + +G T LH AA NG++++L+  +
Sbjct: 4   ALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 195 NCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAE 254
           N    DG T  HLA   G       L E+      ++ +D  G T LHLA    + ++ +
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGAD---VNAKDNDGRTPLHLAAKNGHLEIVK 57

Query: 255 YIIKKTKVDKNCRNYTNQTAL 275
            +++K   D N R+    T L
Sbjct: 58  LLLEK-GADVNARDKDGNTPL 77

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 62/265 (23%), Positives = 98/265 (36%), Gaps = 44/265 (16%)

Query: 90  LMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG----- 144
            +     +    PL++A     ID+VK +L            N   PLHY S I      
Sbjct: 26  DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNST-PLHYLSNIKYNLTD 84

Query: 145 NVEITKLLLNSKPDMALQYNNNGYTPLHQAAIN--GHVKILEAFIASSPTSFNCLTTDGD 202
             EI KLLL    ++    +NNG TPL  A         I+E  + +   + N   +DG+
Sbjct: 85  VKEIVKLLLEYGANVN-APDNNGITPLLYAISKKSNSYSIVEYLLDNG-ANVNIKNSDGE 142

Query: 203 TVFHLALRFGKYNAFI-------------------FLAESFDFTGLLHQQDQFGNTVLHL 243
            + HL L   K +  I                    L+        ++ +D +G T LH 
Sbjct: 143 NLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVP----INIKDVYGFTPLHY 198

Query: 244 AILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSPKH 303
           A+  NN +  +Y++     + N  N    T L +   +  KE F   L +      S K 
Sbjct: 199 AVYNNNPEFVKYLLDL-GANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN----GPSIKT 253

Query: 304 ------LQQYKDLSKRQIKELSKRY 322
                   + KDL+     ++ K+ 
Sbjct: 254 IIETLLYFKDKDLNTITKIKMLKKS 278

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 167 GYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220
           G T LH+AAI+G +++++  +       N    DG+T  H+A   G       L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGV-DINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 99  ESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
             T LH A   G++++VK +L+         D++    LH A+  GN+E+ KLLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 4  ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
          A   G++ELV  +++    +     +   T LH A R GN EI  LLL+    V    ++
Sbjct: 4  AAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLLEHGADV-NAKDK 59

Query: 64 ERQSAFLLACRRGHVNVVKLMLNQ 87
          +  +A  LA R G++ +VKL+L  
Sbjct: 60 DGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 152 LLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLA 208
           LL   P      + NG TPLH AA  G +++++  +       N   +DG T   LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLK-PGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 229 LLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALD 276
            L+  D  GNT LHLA      +L ++++K   VD N R+    TALD
Sbjct: 8   DLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 12/65 (18%)

Query: 232 QQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTA------------LDVLK 279
           ++  FGNT LH+A+   NY+LA ++  +  V+    NY  +T             +++L+
Sbjct: 87  KERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILR 146

Query: 280 ESGTK 284
             G +
Sbjct: 147 AKGAQ 151

Length = 154

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 24  VAAVNEKLETPLHEACRQGN-----AEISALLLKTN--LFVATLLNQERQSAFLLACRRG 76
           V A +   +TPLH A   GN      E++ LLL+    L V  L +++  +    A   G
Sbjct: 99  VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNG 158

Query: 77  HVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
             ++V+L+L               T L  A   G+I++VK +L 
Sbjct: 159 DADIVELLLEAGADPNSRNSYGV-TALDPAAKNGRIELVKLLLD 201

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.8 bits (108), Expect = 4e-05
 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 17/159 (10%)

Query: 106 AISRGKIDIVKEILK--VRPSFCEQADKNRCLPLHYASRIGNVEITKLLL--NSKPDMAL 161
           AI  G++DI + +L   + P+F      +   P+  A +  + E  KLL+   + PD   
Sbjct: 9   AILFGELDIARRLLDIGINPNF---EIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD--- 62

Query: 162 QYNNNGY-TPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IF 219
                   + LH A   G VK +E  +     + +    DG T  HLA    K +   + 
Sbjct: 63  -VKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLL 121

Query: 220 LAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
           +A   D    +   D+F  + LHLA++  + +  E +I 
Sbjct: 122 IARGADPD--IPNTDKF--SPLHLAVMMGDIKGIELLID 156

Length = 413

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 236 FGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTA 274
            GNT+LH+A    NY+LAE++ ++  V+    NY ++TA
Sbjct: 93  TGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETA 131

Length = 166

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 7   FGHIELVTEIIKL--CPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQE 64
            G+IE+   +++      +    +E   TPLH A   G+A+I  LLL+      +  N  
Sbjct: 121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNS-RNSY 179

Query: 65  RQSAFLLACRRGHVNVVKLMLN 86
             +A   A + G + +VKL+L+
Sbjct: 180 GVTALDPAAKNGRIELVKLLLD 201

Length = 235

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 34/205 (16%)

Query: 78  VNVVKLMLNQSWLMEFEEDRDESTPLH-----VAISRGKIDIVKEILKVRPSFCEQADKN 132
           ++VVK++L+          ++ STPLH             +IVK +L+   +     D N
Sbjct: 48  IDVVKILLDNG-ADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNN 105

Query: 133 RCLPLHYAS--RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHV--KILEAFIA 188
              PL YA   +  +  I + LL++  ++ ++ N++G   LH    +  +  KIL+  I 
Sbjct: 106 GITPLLYAISKKSNSYSIVEYLLDNGANVNIK-NSDGENLLHLYLESNKIDLKILKLLID 164

Query: 189 S-----SPTSFNCL--------TTD--GDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQ 233
                 +    N L          D  G T  H A+         +L +      L+   
Sbjct: 165 KGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLV--- 221

Query: 234 DQFGNTVLHLAILRNNYQLAEYIIK 258
           +++G+T LH+AIL NN    + I K
Sbjct: 222 NKYGDTPLHIAILNNN----KEIFK 242

Length = 422

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 71/302 (23%), Positives = 103/302 (34%), Gaps = 74/302 (24%)

Query: 63  QERQSAFLLACRRGHVNVVKLMLNQSWLMEFE-EDRDESTPLHVAISRGKIDIVKEILKV 121
            + + AFL A  RG +  V   L +   +     DR   + L VA    +   + E+L  
Sbjct: 15  SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLL- 73

Query: 122 RPSFCEQADKNRCLP------LHYASR--IGNVE--ITKLLLNSKPDMALQYNNN----- 166
                       C        LH  S   +  VE  +  LL   +    L+  N+     
Sbjct: 74  ---------NLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSE 124

Query: 167 ---GYTPLHQAAINGH---VKILEAFIASSPTSFNC---LTTDGDTVFHLALRFGKY--N 215
              G T LH AA   +   VK+L    AS P        + + G   F      G+   N
Sbjct: 125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSF----YHGESPLN 180

Query: 216 AFIFLAESFDFTGLLHQ-------QDQFGNTVLHLAILRNNYQLAEYIIKKTKV------ 262
           A   L  S     LL +        D  GNT+LHL ++ N ++ AEY     ++      
Sbjct: 181 AAACLG-SPSIVALLSEDPADILTADSLGNTLLHLLVMENEFK-AEYEELSCQMYNFALS 238

Query: 263 --DKNC--------RNYTNQTALDVLKESGTKEAFSSELQS-------VEEPNGSPKHLQ 305
             DK           N+   T L +  + G    F  +L         V  PNG  + L 
Sbjct: 239 LLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNG-QQLLS 297

Query: 306 QY 307
            Y
Sbjct: 298 LY 299

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 34/205 (16%)

Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRR---GHV-NVVKLMLNQS 88
            PL+ A    N ++  +LL     + +           L+  +     V  +VKL+L   
Sbjct: 37  LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG 96

Query: 89  WLMEFEEDRDESTPLHVAISR--GKIDIVKEIL----KVRPSFCEQADKNRCLPLHYASR 142
             +    D +  TPL  AIS+      IV+ +L     V     +  +      LH    
Sbjct: 97  ANVN-APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGEN-----LLHLYLE 150

Query: 143 IG--NVEITKLLLNSKPD--------MALQY-------NNNGYTPLHQAAINGHVKILEA 185
               +++I KLL++   D          L Y       +  G+TPLH A  N + + ++ 
Sbjct: 151 SNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKY 210

Query: 186 FIASSPTSFNCLTTDGDTVFHLALR 210
            +     + N +   GDT  H+A+ 
Sbjct: 211 LLDLG-ANPNLVNKYGDTPLHIAIL 234

Length = 422

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 39/166 (23%), Positives = 59/166 (35%), Gaps = 41/166 (24%)

Query: 14  TEIIKLCPQLVAAVN----EKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAF 69
            EI KL     A +N     K  T LH A    +  ++ LLL                  
Sbjct: 147 AEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL------------------ 188

Query: 70  LLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQA 129
                  +VN+               D+  ++PLH A+      IV  +L+   +  +  
Sbjct: 189 ---SYGANVNIP--------------DKTNNSPLHHAVKHYNKPIVHILLE-NGASTDAR 230

Query: 130 DKNRCLPLHYA-SRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQA 174
           DK    PLH +     + +I KLLL    D+  +    G T LH +
Sbjct: 231 DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS 276

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 130 DKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQA 174
           D N   PLH A++ G +E+ + LL    D+ L+ +++G T L  A
Sbjct: 13  DGNGNTPLHLAAKYGALELVQWLLKPGVDLNLR-DSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 95  EDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYA 140
            D + +TPLH+A   G +++V+ +LK         D +    L  A
Sbjct: 12  TDGNGNTPLHLAAKYGALELVQWLLK-PGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 166 NGYTPLHQAAINGHVKILEAFI 187
           +G TPLH AA NGH+++++  +
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLL 22

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLML 85
          T LH+A   G  E+   LL+  + +         +A  +A   G++ V+KL+L
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDINRTDEDGN-TALHIAAENGNLEVLKLLL 54

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	539
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02730	672	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02792	631	ankyrin-like protein; Provisional	99.96
PF13962	113	PGG: Domain of unknown function	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PHA02792	631	ankyrin-like protein; Provisional	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.88
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.81
PHA02741	169	hypothetical protein; Provisional	99.79
PHA02743	166	Viral ankyrin protein; Provisional	99.79
PHA02741	169	hypothetical protein; Provisional	99.78
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.78
PHA02884	300	ankyrin repeat protein; Provisional	99.77
PHA02736	154	Viral ankyrin protein; Provisional	99.77
PHA02743	166	Viral ankyrin protein; Provisional	99.77
PHA02884	300	ankyrin repeat protein; Provisional	99.76
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.74
PHA02736	154	Viral ankyrin protein; Provisional	99.74
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.71
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.67
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.64
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.61
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.59
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.56
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.56
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.42
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.42
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.38
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.29
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.26
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.26
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.26
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.21
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.2
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.19
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.19
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.18
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.15
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.09
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.52
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.51
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.49
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.48
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.4
PF13606	30	Ank_3: Ankyrin repeat	98.39
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.37
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.36
PF13606	30	Ank_3: Ankyrin repeat	98.34
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.31
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.3
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.3
KOG0522	560	consensus Ankyrin repeat protein [General function	98.26
KOG0522	560	consensus Ankyrin repeat protein [General function	98.24
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.18
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.1
KOG0511	516	consensus Ankyrin repeat protein [General function	98.09
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.0
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.96
KOG0511	516	consensus Ankyrin repeat protein [General function	97.72
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.69
KOG2384	223	consensus Major histocompatibility complex protein	97.68
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.66
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.63
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.6
KOG2384	223	consensus Major histocompatibility complex protein	97.36
KOG2505	591	consensus Ankyrin repeat protein [General function	96.9
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.16
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.6
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.73
KOG2505	591	consensus Ankyrin repeat protein [General function	93.8
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.41
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	90.78
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.0
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	89.07
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	87.78
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	86.02
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	83.03

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.4e-40  Score=345.19  Aligned_cols=285  Identities=24%  Similarity=0.345  Sum_probs=253.8

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      |+.|+..|+.+.|+.|++.++..++..+..|.||||.|+..|+.+++++|++.|+++ +..+..|.||||.|+..|+.++
T Consensus         5 l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~-n~~~~~~~t~L~~A~~~~~~~i   83 (434)
T PHA02874          5 LRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADI-NHINTKIPHPLLTAIKIGAHDI   83 (434)
T ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHH
Confidence            467999999999999999887778888999999999999999999999999999987 5678899999999999999999


Q ss_pred             HHHHHhCCcccc----------------------cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHh
Q 040043           81 VKLMLNQSWLME----------------------FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLH  138 (539)
Q Consensus        81 v~~Ll~~~~~~~----------------------~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh  138 (539)
                      +++|+++|.+..                      ...+..|.||||+|+..|+.++++.|++.++++ +..|..|.||||
T Consensus        84 v~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh  162 (434)
T PHA02874         84 IKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIH  162 (434)
T ss_pred             HHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHH
Confidence            999998876431                      135778999999999999999999999999887 788999999999


Q ss_pred             HHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHH
Q 040043          139 YASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFI  218 (539)
Q Consensus       139 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~  218 (539)
                      +|+..|+.+++++|+++|++++.. +..|.||||.|+..|+.++++.|++.+++ ++..+..|.||||.|+..++ +++.
T Consensus       163 ~A~~~~~~~iv~~Ll~~g~~~n~~-~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~-i~~~~~~g~TpL~~A~~~~~-~~i~  239 (434)
T PHA02874        163 IAIKHNFFDIIKLLLEKGAYANVK-DNNGESPLHNAAEYGDYACIKLLIDHGNH-IMNKCKNGFTPLHNAIIHNR-SAIE  239 (434)
T ss_pred             HHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHCCh-HHHH
Confidence            999999999999999999998876 89999999999999999999999988865 67888999999999999876 4566


Q ss_pred             HHHhhcccccccccccCCCCcHHHHHHHcC-CHHHHHHHhhccccCccccccCCCCHHHHHHHcC-CchhhHHHhhhcc
Q 040043          219 FLAESFDFTGLLHQQDQFGNTVLHLAILRN-NYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESG-TKEAFSSELQSVE  295 (539)
Q Consensus       219 ~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~-~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~-~~~~~~~~l~~~~  295 (539)
                      +|+.    +..++.+|.+|+||||+|+..+ +.+++++|++ .|++++.+|..|+||+++|...+ ..+.++.++....
T Consensus       240 ~Ll~----~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~-~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~  313 (434)
T PHA02874        240 LLIN----NASINDQDIDGSTPLHHAINPPCDIDIIDILLY-HKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAV  313 (434)
T ss_pred             HHHc----CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcC
Confidence            6653    4568899999999999999876 7899999995 59999999999999999999887 5566666666543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.4e-39  Score=337.74  Aligned_cols=285  Identities=19%  Similarity=0.212  Sum_probs=259.2

Q ss_pred             eecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcC---CHHHHHHHHhcCcccccccccCCChHHHHHHHcC-CH
Q 040043            3 AATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQG---NAEISALLLKTNLFVATLLNQERQSAFLLACRRG-HV   78 (539)
Q Consensus         3 ~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g---~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g-~~   78 (539)
                      .|+..++.++|+.|++.+.+ ++.++..|.||||.|+..|   +.++++.|++.|+++ +..+..|.||||+|+..| +.
T Consensus        20 ~~~~~~~~~~v~~Ll~~ga~-vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~~~~   97 (471)
T PHA03095         20 LNASNVTVEEVRRLLAAGAD-VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNATTL   97 (471)
T ss_pred             HcCCCCCHHHHHHHHHcCCC-cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCcH
Confidence            46788999999999999988 7899999999999999999   999999999999988 667889999999999999 59


Q ss_pred             HHHHHHHhCCcccccccCCCCCcHHHHHH--HcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcC--CHHHHHHHHc
Q 040043           79 NVVKLMLNQSWLMEFEEDRDESTPLHVAI--SRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG--NVEITKLLLN  154 (539)
Q Consensus        79 eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~  154 (539)
                      +++++|+++|++++ ..+..|.||||.|+  ..++.++++.|++.++++ +..|..|.||||+|+..+  +.+++++|++
T Consensus        98 ~iv~lLl~~ga~in-~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~  175 (471)
T PHA03095         98 DVIKLLIKAGADVN-AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLID  175 (471)
T ss_pred             HHHHHHHHcCCCCC-CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHHH
Confidence            99999999999987 67889999999999  556889999999999987 788999999999999876  6899999999


Q ss_pred             CCCccccccccCCCCHHHHHHHc--CCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCCh--hHHHHHHhhccccccc
Q 040043          155 SKPDMALQYNNNGYTPLHQAAIN--GHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKY--NAFIFLAESFDFTGLL  230 (539)
Q Consensus       155 ~~~~~~~~~d~~g~tpLh~Aa~~--g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~--~~v~~Ll~~~~~~~~~  230 (539)
                      .|+++... |..|.||||.|+..  ++.++++.|++.+. +++..|..|+||||+|+..++.  .+++.+++.   +..+
T Consensus       176 ~g~~~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~-~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~---g~di  250 (471)
T PHA03095        176 AGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRAGC-DPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA---GISI  250 (471)
T ss_pred             cCCCCccc-CCCCCCHHHHHHHHCCCcHHHHHHHHHcCC-CCcccCCCCCCHHHHHHhcCCchHHHHHHHHHc---CCCC
Confidence            99999887 99999999999975  77899999998874 4789999999999999999875  466777665   5679


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCC
Q 040043          231 HQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEP  297 (539)
Q Consensus       231 ~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~  297 (539)
                      |.+|..|+||||+|+..|+.+++++|++ .|+|++.+|..|+||+++|...|+.+.++.+++.+.++
T Consensus       251 n~~d~~g~TpLh~A~~~~~~~~v~~LL~-~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        251 NARNRYGQTPLHYAAVFNNPRACRRLIA-LGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence            9999999999999999999999999995 59999999999999999999999999999999876554

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-37  Score=317.31  Aligned_cols=288  Identities=24%  Similarity=0.313  Sum_probs=160.1

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||+|+.....+.|+.|++.+.+ ...+|.++.+|+|+|+..|+.++++.|++.+.++ +..|..|.||||.||..++.|.
T Consensus        92 l~~a~~~~~~~~i~~Lls~gad-~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dv-nl~de~~~TpLh~A~~~~~~E~  169 (929)
T KOG0510|consen   92 LHAAVEYNQGDKIQVLLSYGAD-TPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADV-NLEDENGFTPLHLAARKNKVEA  169 (929)
T ss_pred             hHHHhhcchHHHHHHHHhcCCC-CChhhhhccCchhhccccchHHHHHHHHHhcCCc-cccccCCCchhhHHHhcChHHH
Confidence            4555566666666666665555 4555555666666666666666666666665444 4455556666666666666665


Q ss_pred             HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhc-----CCccccccCCCCChHHhHHHHcCCHHHHHHHHcC
Q 040043           81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKV-----RPSFCEQADKNRCLPLHYASRIGNVEITKLLLNS  155 (539)
Q Consensus        81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~-----~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  155 (539)
                      .+.|++.++++. ..|.+|.+|+|.|+.+|..++.+.++.+     ...+ +..+..|.||||.|+..|+.++++.+|+.
T Consensus       170 ~k~Li~~~a~~~-K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~i-n~~~n~~~~pLhlAve~g~~e~lk~~L~n  247 (929)
T KOG0510|consen  170 KKELINKGADPC-KSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHI-NFDNNEKATPLHLAVEGGDIEMLKMCLQN  247 (929)
T ss_pred             HHHHHhcCCCCC-cccCcCCchHHHHHHhcchhhhhhhhccccchhhccc-ccccCCCCcchhhhhhcCCHHHHHHHHhC
Confidence            555556555554 3455555566666666665555555552     2222 44455555666666666666666655555


Q ss_pred             CCcccc--------------ccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHH
Q 040043          156 KPDMAL--------------QYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA  221 (539)
Q Consensus       156 ~~~~~~--------------~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll  221 (539)
                      ++....              ..|++|.||||+|++.|++++++.|+..+ .+++.++.++.||||.|+.+|+.+.++-|+
T Consensus       248 ~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~G-a~I~~kn~d~~spLH~AA~yg~~ntv~rLL  326 (929)
T KOG0510|consen  248 GKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFG-ASINSKNKDEESPLHFAAIYGRINTVERLL  326 (929)
T ss_pred             ccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcC-CcccccCCCCCCchHHHHHcccHHHHHHHH
Confidence            443221              12455556666666666666665555544 235555555566666666666666665555


Q ss_pred             hhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCcc---ccccCCCCHHHHHHHcCCchhhHHHhhhcc
Q 040043          222 ESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKN---CRNYTNQTALDVLKESGTKEAFSSELQSVE  295 (539)
Q Consensus       222 ~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~---~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~  295 (539)
                      + .....++|..|..|+||||+|++.|+.++++.|+++ |++.+   ..|.+|.||||+|+..|+...++.++..++
T Consensus       327 ~-~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~-GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga  401 (929)
T KOG0510|consen  327 Q-ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK-GALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGA  401 (929)
T ss_pred             h-CcCccccccccccCCCchhhhhhcCHHHHHHHHHhc-ChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCC
Confidence            5 233345555555666666666655556666655533 44443   335556666666666555555555555444

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=6e-39  Score=332.49  Aligned_cols=279  Identities=15%  Similarity=0.168  Sum_probs=238.0

Q ss_pred             ccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCC--HHHHHH
Q 040043            6 GFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGH--VNVVKL   83 (539)
Q Consensus         6 ~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~--~eiv~~   83 (539)
                      ..++.++|+.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..++  .+++++
T Consensus        48 ~~~~~~iv~~Ll~~Gad-vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~~~~~~~~e~v~l  125 (446)
T PHA02946         48 KGLDERFVEELLHRGYS-PNETDDDGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLSGTDDEVIERINL  125 (446)
T ss_pred             cCCCHHHHHHHHHCcCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCchHHHHHH
Confidence            55678999999999988 7899999999999999999999999999999888 6789999999999988764  899999


Q ss_pred             HHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcC--CHHHHHHHHcCCCcccc
Q 040043           84 MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG--NVEITKLLLNSKPDMAL  161 (539)
Q Consensus        84 Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~  161 (539)
                      |+++|++++...+..|.|||| |+..|+.++++.|++.+.+. +..|..|+||||+|+..+  +.+++++|++.|++++.
T Consensus       126 Ll~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~  203 (446)
T PHA02946        126 LVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSK  203 (446)
T ss_pred             HHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcc
Confidence            999999988667889999998 66678999999999988877 788999999999988755  46899999999999988


Q ss_pred             ccccCCCCHHHHHHHcC--CHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCC-hhHHHHHHhhcccc-----------
Q 040043          162 QYNNNGYTPLHQAAING--HVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK-YNAFIFLAESFDFT-----------  227 (539)
Q Consensus       162 ~~d~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~-~~~v~~Ll~~~~~~-----------  227 (539)
                      . |.+|.||||+|+..|  +.++++.|+.  ..+++..|..|+||||+|++.++ .+++++|+......           
T Consensus       204 ~-d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~  280 (446)
T PHA02946        204 P-DHDGNTPLHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFY  280 (446)
T ss_pred             c-CCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHc
Confidence            6 999999999999986  7889988874  36689999999999999999987 47888888764311           


Q ss_pred             ---c---ccccc-cCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCC
Q 040043          228 ---G---LLHQQ-DQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNG  299 (539)
Q Consensus       228 ---~---~~~~~-d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~  299 (539)
                         .   .++.. +..|.||||+|+..|+.+++++|+++ +       ..|+|||++|+..++.++++.++..+...+.
T Consensus       281 ~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~-~-------~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~  351 (446)
T PHA02946        281 DRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDN-D-------IICEDAMYYAVLSEYETMVDYLLFNHFSVDS  351 (446)
T ss_pred             CchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHC-C-------CccccHHHHHHHhCHHHHHHHHHHCCCCCCC
Confidence               0   12233 24688999999999999999999965 3       3578999999999999999999988877664

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.2e-38  Score=330.18  Aligned_cols=274  Identities=18%  Similarity=0.240  Sum_probs=136.3

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcC--CHHHHHHHHhcCcccccccccCCChHHHHHHHcCCH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQG--NAEISALLLKTNLFVATLLNQERQSAFLLACRRGHV   78 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~   78 (539)
                      ||+|++.|+.++|+.|++.+.+ ++.+|..|.||||+|+..+  +.+++++|++.|+++....+.+|.|||| |+..|+.
T Consensus        76 Lh~Aa~~g~~eiv~lLL~~GAd-in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~  153 (446)
T PHA02946         76 LHIASKINNNRIVAMLLTHGAD-PNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSE  153 (446)
T ss_pred             HHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCCh
Confidence            4555555555555555555544 3455555555555555443  2455555555555543334555555554 4444555


Q ss_pred             HHHHHHHhCCcccccccCCCCCcHHHHHHHcCC--HHHHHHHHhcCCccccccCCCCChHHhHHHHcC--CHHHHHHHHc
Q 040043           79 NVVKLMLNQSWLMEFEEDRDESTPLHVAISRGK--IDIVKEILKVRPSFCEQADKNRCLPLHYASRIG--NVEITKLLLN  154 (539)
Q Consensus        79 eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~--~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~  154 (539)
                      +++++|++.+.+.+ ..|..|.||||.|+..++  .++++.|++.+.++ +..|.+|.||||+|+..|  +.+++++|++
T Consensus       154 ~vv~~Ll~~gad~~-~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~  231 (446)
T PHA02946        154 RVFKKIMSIGFEAR-IVDKFGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDHDGNTPLHIVCSKTVKNVDIINLLLP  231 (446)
T ss_pred             HHHHHHHhcccccc-ccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCCcHHHHHHHHc
Confidence            55555555554444 345555555555544332  34555555555544 444555555555555543  4455555553


Q ss_pred             CCCccccccccCCCCHHHHHHHcCC-HHHHHHHHHhCCCc-------------------cccc-cCCCCcHHHHHHHhCC
Q 040043          155 SKPDMALQYNNNGYTPLHQAAINGH-VKILEAFIASSPTS-------------------FNCL-TTDGDTVFHLALRFGK  213 (539)
Q Consensus       155 ~~~~~~~~~d~~g~tpLh~Aa~~g~-~~~v~~Ll~~~~~~-------------------~~~~-d~~g~t~Lh~Av~~~~  213 (539)
                       +++++.. |..|.||||+|++.++ .++++.|+..+...                   ++.. +..|+||||+|+.+|+
T Consensus       232 -gadin~~-d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~  309 (446)
T PHA02946        232 -STDVNKQ-NKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGS  309 (446)
T ss_pred             -CCCCCCC-CCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCC
Confidence             4444443 5555555555555544 24455555443210                   0000 1124455555555555


Q ss_pred             hhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhh
Q 040043          214 YNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQ  292 (539)
Q Consensus       214 ~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~  292 (539)
                      .+++++|++.          +.+|.||||+|+..++.+++++|+. .|+++|.. ..|+||+++|.+.++.+.++.++.
T Consensus       310 ~eivk~Ll~~----------~~~~~t~L~~A~~~~~~~~v~~Ll~-~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~  376 (446)
T PHA02946        310 IRCVKYLLDN----------DIICEDAMYYAVLSEYETMVDYLLF-NHFSVDSV-VNGHTCMSECVRLNNPVILSKLML  376 (446)
T ss_pred             HHHHHHHHHC----------CCccccHHHHHHHhCHHHHHHHHHH-CCCCCCCc-cccccHHHHHHHcCCHHHHHHHHh
Confidence            5555555542          3345555555555555555555552 25555553 345555555555555555555544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3.1e-38  Score=336.56  Aligned_cols=287  Identities=16%  Similarity=0.121  Sum_probs=243.0

Q ss_pred             cccCcHHHHHHHHHhC-Chhhhcc-ccCCCCHHHHHHH--cCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCC--H
Q 040043            5 TGFGHIELVTEIIKLC-PQLVAAV-NEKLETPLHEACR--QGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGH--V   78 (539)
Q Consensus         5 a~~g~~e~v~~Ll~~~-~~~l~~~-n~~g~TpLh~Aa~--~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~--~   78 (539)
                      .+.++.++|++|++.+ .+ ++.+ |..|.||||.|+.  .++.+++++|++.|+++ +..|..|.||||+|+..|+  .
T Consensus       150 ~~~v~leiVk~LLe~G~AD-IN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD~~G~TPLH~Aa~~g~~~~  227 (764)
T PHA02716        150 TRGIDLDLIKYMVDVGIVN-LNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV-NLQNNHLITPLHTYLITGNVCA  227 (764)
T ss_pred             ccCCCHHHHHHHHHCCCCC-cccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCH
Confidence            4569999999999999 66 6777 8999999999875  46899999999999988 6689999999999999995  5


Q ss_pred             HHHHHHHhCCcccccccCCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHhc
Q 040043           79 NVVKLMLNQSWLMEFEEDRDESTPLHVA-------------------------------------ISRGKIDIVKEILKV  121 (539)
Q Consensus        79 eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A-------------------------------------~~~g~~~~v~~LL~~  121 (539)
                      ++|++|+++|++++ .++..|.||||.|                                     +..|+.++++.|++.
T Consensus       228 eIVklLLe~GADVN-~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~  306 (764)
T PHA02716        228 SVIKKIIELGGDMD-MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP  306 (764)
T ss_pred             HHHHHHHHcCCCCC-CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC
Confidence            99999999999988 6789999999975                                     345778899999999


Q ss_pred             CCccccccCCCCChHHhHHHH--cCCHHHHHHHHcCCCccccccccCCCCHHHHHHH--------------cCCHHHHHH
Q 040043          122 RPSFCEQADKNRCLPLHYASR--IGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAI--------------NGHVKILEA  185 (539)
Q Consensus       122 ~~~~~~~~d~~g~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~--------------~g~~~~v~~  185 (539)
                      ++++ +..|..|+||||+|+.  .++.+++++|++.|++++.. |..|+||||.|+.              .++.++++.
T Consensus       307 GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~k-D~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVkl  384 (764)
T PHA02716        307 GVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEP-DNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQC  384 (764)
T ss_pred             CCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccC-CCCCCCHHHHHHHhhhhhccccccccccChHHHHHH
Confidence            9886 7889999999999875  46899999999999999876 9999999999875              378999999


Q ss_pred             HHHhCCCccccccCCCCcHHHHH----HHhCChhHHHHHHhhccc-----------------------------------
Q 040043          186 FIASSPTSFNCLTTDGDTVFHLA----LRFGKYNAFIFLAESFDF-----------------------------------  226 (539)
Q Consensus       186 Ll~~~~~~~~~~d~~g~t~Lh~A----v~~~~~~~v~~Ll~~~~~-----------------------------------  226 (539)
                      |++.+ .+++..|..|+||||.+    ...++.+++++|++....                                   
T Consensus       385 LL~~G-ADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~  463 (764)
T PHA02716        385 LISLG-ADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDL  463 (764)
T ss_pred             HHHCC-CCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhh
Confidence            99887 45899999999999942    334677888887763210                                   


Q ss_pred             -----------------------ccccccccCCCCcHHHHHHHcCCH-----HHHHHHhhccccCccccccCCCCHHHHH
Q 040043          227 -----------------------TGLLHQQDQFGNTVLHLAILRNNY-----QLAEYIIKKTKVDKNCRNYTNQTALDVL  278 (539)
Q Consensus       227 -----------------------~~~~~~~d~~G~T~Lh~A~~~~~~-----~iv~~Ll~~~~~~~~~~n~~g~t~l~~a  278 (539)
                                             ....|..|..|+||||+|+..++.     +++++|+ +.|+|+|.+|++|+|||++|
T Consensus       464 ~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL-~~GADIN~~d~~G~TPLh~A  542 (764)
T PHA02716        464 YTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLL-SIQYNINIPTKNGVTPLMLT  542 (764)
T ss_pred             hhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHH-hCCCCCcccCCCCCCHHHHH
Confidence                                   012355688999999999999876     4569999 55999999999999999999


Q ss_pred             HHcCCc-----hhhHHHhhhccCCC
Q 040043          279 KESGTK-----EAFSSELQSVEEPN  298 (539)
Q Consensus       279 ~~~~~~-----~~~~~~l~~~~~~~  298 (539)
                      .+.|..     ++++.+|+.++.++
T Consensus       543 ~~~g~~~~~~~eIvk~LL~~ga~~~  567 (764)
T PHA02716        543 MRNNRLSGHQWYIVKNILDKRPNVD  567 (764)
T ss_pred             HHcCCccccHHHHHHHHHhcCCCcc
Confidence            999965     88999999777654

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-38  Score=349.29  Aligned_cols=291  Identities=24%  Similarity=0.287  Sum_probs=215.7

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHH-----------------------------------------
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEAC-----------------------------------------   39 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa-----------------------------------------   39 (539)
                      ||.|++.||.|+|+.|++.+|+.+...|..|.||||.|+                                         
T Consensus        45 LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  124 (682)
T PHA02876         45 IHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHI  124 (682)
T ss_pred             HHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999888888889999999666                                         


Q ss_pred             -----------------------------HcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcc
Q 040043           40 -----------------------------RQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWL   90 (539)
Q Consensus        40 -----------------------------~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~   90 (539)
                                                   ..|+.+++++|++.|+++ +..|..|.||||+|+..|+.++|++|+++|++
T Consensus       125 l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gadv-n~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad  203 (682)
T PHA02876        125 LKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADV-NAKDIYCITPIHYAAERGNAKMVNLLLSYGAD  203 (682)
T ss_pred             HHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence                                         456788889999998887 56788899999999999999999999999888


Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcc----------------------------ccccCCCCChHHhHHHH
Q 040043           91 MEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSF----------------------------CEQADKNRCLPLHYASR  142 (539)
Q Consensus        91 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~----------------------------~~~~d~~g~tpLh~A~~  142 (539)
                      .+ ..+.+|.||||+|+..|+.++++.|++.++..                            .+..|..|.||||+|+.
T Consensus       204 ~n-~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~  282 (682)
T PHA02876        204 VN-IIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQ  282 (682)
T ss_pred             cC-ccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence            76 46677888888888888888877777654432                            23456677888888888


Q ss_pred             cCCH-HHHHHHHcCCCccccccccCCCCHHHHHHHcC-CHHHHHHHHHhCCCccccccCCCCcHHHHHHHhC-ChhHHHH
Q 040043          143 IGNV-EITKLLLNSKPDMALQYNNNGYTPLHQAAING-HVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG-KYNAFIF  219 (539)
Q Consensus       143 ~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g-~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~-~~~~v~~  219 (539)
                      .++. +++++|++.|++++.. |.+|.||||+|+.+| ..++++.|+..+ .+++..|..|.||||+|+..+ +.+++++
T Consensus       283 ~~~~~~iv~lLl~~gadin~~-d~~g~TpLh~Aa~~g~~~~~v~~Ll~~g-adin~~d~~g~TpLh~A~~~~~~~~iv~l  360 (682)
T PHA02876        283 APSLSRLVPKLLERGADVNAK-NIKGETPLYLMAKNGYDTENIRTLIMLG-ADVNAADRLYITPLHQASTLDRNKDIVIT  360 (682)
T ss_pred             CCCHHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhCCCHHHHHHHHHcC-CCCCCcccCCCcHHHHHHHhCCcHHHHHH
Confidence            7775 5777788888777765 777888888888777 467777666655 336667777777777777643 5566666


Q ss_pred             HHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCc-hhhHHHhhhccCCC
Q 040043          220 LAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTK-EAFSSELQSVEEPN  298 (539)
Q Consensus       220 Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~-~~~~~~l~~~~~~~  298 (539)
                      |++.   +..++.+|..|+||||+|+..++.+++++|++ .|++++..+..|.||||+|+..+.. ..++.+++.+.+++
T Consensus       361 Ll~~---gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~-~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin  436 (682)
T PHA02876        361 LLEL---GANVNARDYCDKTPIHYAAVRNNVVIINTLLD-YGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVN  436 (682)
T ss_pred             HHHc---CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence            6654   45567777777777777777777777777773 3677777777777777776655443 34555565555554


Q ss_pred             C
Q 040043          299 G  299 (539)
Q Consensus       299 ~  299 (539)
                      .
T Consensus       437 ~  437 (682)
T PHA02876        437 S  437 (682)
T ss_pred             c
Confidence            3

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.5e-38  Score=322.87  Aligned_cols=272  Identities=25%  Similarity=0.353  Sum_probs=245.2

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||+|+..|+.+..+.|++.+.+ ++..|+.|.||||.||..++.|..+.|++.|++. ...|.+|..|+|.|+++|..|+
T Consensus       125 lh~A~~~~~~s~L~~Ll~~~~d-vnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~-~K~~~~~~~~iH~aa~s~s~e~  202 (929)
T KOG0510|consen  125 LHLAADSGNYSCLKLLLDYGAD-VNLEDENGFTPLHLAARKNKVEAKKELINKGADP-CKSDIDGNFPIHEAARSGSKEC  202 (929)
T ss_pred             hhhccccchHHHHHHHHHhcCC-ccccccCCCchhhHHHhcChHHHHHHHHhcCCCC-CcccCcCCchHHHHHHhcchhh
Confidence            6999999999999999999966 8999999999999999999999889999999988 7789999999999999999999


Q ss_pred             HHHHHh-----CCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcc--------------ccccCCCCChHHhHHH
Q 040043           81 VKLMLN-----QSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSF--------------CEQADKNRCLPLHYAS  141 (539)
Q Consensus        81 v~~Ll~-----~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~--------------~~~~d~~g~tpLh~A~  141 (539)
                      .+.++.     ....++ ..+.+|.+|||.|+..|+.++++.+|+.+...              .+..|.+|+||||+|+
T Consensus       203 mEi~l~~~g~~r~~~in-~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~  281 (929)
T KOG0510|consen  203 MEIFLPEHGYERQTHIN-FDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAA  281 (929)
T ss_pred             hhhhhccccchhhcccc-cccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHH
Confidence            999998     333344 46788999999999999999999999876543              3456899999999999


Q ss_pred             HcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHH-hCCCccccccCCCCcHHHHHHHhCChhHHHHH
Q 040043          142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA-SSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL  220 (539)
Q Consensus       142 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~L  220 (539)
                      +.|+.+.++.|+..|++++.. +.++.||||.||+.|+.+.++.||+ .+.-..+..|-.|.||||+|+++|+.++++.|
T Consensus       282 r~G~~~svd~Ll~~Ga~I~~k-n~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlL  360 (929)
T KOG0510|consen  282 RQGGPESVDNLLGFGASINSK-NKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLL  360 (929)
T ss_pred             HcCChhHHHHHHHcCCccccc-CCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHH
Confidence            999999999999999999987 8999999999999999999999999 44456778888999999999999999999999


Q ss_pred             HhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHH
Q 040043          221 AESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDV  277 (539)
Q Consensus       221 l~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~  277 (539)
                      ++.+.........|.+|+||||+|+..|+..+|++|+.+ |+++..+|.+|.+++++
T Consensus       361 l~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~-Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  361 LNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISH-GADIGVKNKKGKSAFDT  416 (929)
T ss_pred             HhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHc-CCceeeccccccccccc
Confidence            998443221125699999999999999999999999955 99999999999999996

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-37  Score=329.47  Aligned_cols=281  Identities=22%  Similarity=0.280  Sum_probs=258.1

Q ss_pred             CcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHH-----HHHcCCHHHHH
Q 040043            8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLL-----ACRRGHVNVVK   82 (539)
Q Consensus         8 g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~-----A~~~g~~eiv~   82 (539)
                      ...++++++++.+ +..+..+..+.||||.|++.|+.++++.|++.|+++ +..+..|.||||+     |+..|+.++++
T Consensus        13 ~~~~~~~~~~~~~-~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~-~~~~~~~~t~L~~~~~~~a~~~~~~~iv~   90 (480)
T PHA03100         13 IKVKNIKYIIMED-DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADI-NSSTKNNSTPLHYLSNIKYNLTDVKEIVK   90 (480)
T ss_pred             HHHHHHHHHHhcC-ccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCC-CCccccCcCHHHHHHHHHHHhhchHHHHH
Confidence            4457788888665 557788899999999999999999999999999887 5678889999999     99999999999


Q ss_pred             HHHhCCcccccccCCCCCcHHHHHH--HcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcC--CHHHHHHHHcCCCc
Q 040043           83 LMLNQSWLMEFEEDRDESTPLHVAI--SRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG--NVEITKLLLNSKPD  158 (539)
Q Consensus        83 ~Ll~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~  158 (539)
                      +|+++|++++ ..+..|.||||+|+  ..|+.++++.|++.++++ +..+..|.||||+|+..|  +.+++++|+++|++
T Consensus        91 ~Ll~~ga~i~-~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d  168 (480)
T PHA03100         91 LLLEYGANVN-APDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD  168 (480)
T ss_pred             HHHHCCCCCC-CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC
Confidence            9999999985 78899999999999  999999999999999887 778999999999999999  99999999999999


Q ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCC------CcHHHHHHHhCC--hhHHHHHHhhccccccc
Q 040043          159 MALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDG------DTVFHLALRFGK--YNAFIFLAESFDFTGLL  230 (539)
Q Consensus       159 ~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g------~t~Lh~Av~~~~--~~~v~~Ll~~~~~~~~~  230 (539)
                      ++.. +..|.||||.|+..|+.++++.|++.+.+ ++..+..|      .||||.|+..++  .+++++|++.   +..+
T Consensus       169 in~~-d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~---g~di  243 (480)
T PHA03100        169 INAK-NRYGYTPLHIAVEKGNIDVIKFLLDNGAD-INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY---GVPI  243 (480)
T ss_pred             cccc-cCCCCCHHHHHHHhCCHHHHHHHHHcCCC-ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc---CCCC
Confidence            9876 88999999999999999999999998754 67777788      999999999999  9999999987   5678


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCC
Q 040043          231 HQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPN  298 (539)
Q Consensus       231 ~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~  298 (539)
                      +.+|..|+||||+|+..++.+++++|++ .|+|++.+|..|.||+++|...++.+.++.+++.+.+.+
T Consensus       244 n~~d~~g~TpL~~A~~~~~~~iv~~Ll~-~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        244 NIKDVYGFTPLHYAVYNNNPEFVKYLLD-LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence            9999999999999999999999999995 589999999999999999999999999999999877543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.6e-37  Score=338.03  Aligned_cols=291  Identities=20%  Similarity=0.206  Sum_probs=254.1

Q ss_pred             ceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHH
Q 040043            2 KAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVV   81 (539)
Q Consensus         2 h~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv   81 (539)
                      +.|+..|+.++++.|++.+.+ ++.+|..|.||||+||..|+.++|++|++.|+++ +..+.+|.||||.|+..|+.+++
T Consensus       150 ~~~i~~~~~~i~k~Ll~~Gad-vn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~-n~~~~~g~t~L~~A~~~~~~~iv  227 (682)
T PHA02876        150 KERIQQDELLIAEMLLEGGAD-VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADV-NIIALDDLSVLECAVDSKNIDTI  227 (682)
T ss_pred             HHHHHCCcHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-CccCCCCCCHHHHHHHcCCHHHH
Confidence            456788999999999999988 7899999999999999999999999999999987 66788999999999999999998


Q ss_pred             HHHHhCCcccc----------------------------cccCCCCCcHHHHHHHcCCH-HHHHHHHhcCCccccccCCC
Q 040043           82 KLMLNQSWLME----------------------------FEEDRDESTPLHVAISRGKI-DIVKEILKVRPSFCEQADKN  132 (539)
Q Consensus        82 ~~Ll~~~~~~~----------------------------~~~~~~g~t~Lh~A~~~g~~-~~v~~LL~~~~~~~~~~d~~  132 (539)
                      ++|++.+....                            ...+..|.||||+|+..|+. ++++.|++.+.+. +..|..
T Consensus       228 k~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~  306 (682)
T PHA02876        228 KAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIK  306 (682)
T ss_pred             HHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCC
Confidence            88876554321                            13567899999999999986 5889999988876 788999


Q ss_pred             CChHHhHHHHcC-CHHHHHHHHcCCCccccccccCCCCHHHHHHHcC-CHHHHHHHHHhCCCccccccCCCCcHHHHHHH
Q 040043          133 RCLPLHYASRIG-NVEITKLLLNSKPDMALQYNNNGYTPLHQAAING-HVKILEAFIASSPTSFNCLTTDGDTVFHLALR  210 (539)
Q Consensus       133 g~tpLh~A~~~g-~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g-~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~  210 (539)
                      |.||||+|+..| +.++++.|+..|++++.. |..|.||||+|+..+ +.++++.|++.+ .+++..|..|+||||+|+.
T Consensus       307 g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~-d~~g~TpLh~A~~~~~~~~iv~lLl~~g-adin~~d~~G~TpLh~Aa~  384 (682)
T PHA02876        307 GETPLYLMAKNGYDTENIRTLIMLGADVNAA-DRLYITPLHQASTLDRNKDIVITLLELG-ANVNARDYCDKTPIHYAAV  384 (682)
T ss_pred             CCCHHHHHHHhCCCHHHHHHHHHcCCCCCCc-ccCCCcHHHHHHHhCCcHHHHHHHHHcC-CCCccCCCCCCCHHHHHHH
Confidence            999999999999 599999999999999886 999999999999864 677777777665 5589999999999999999


Q ss_pred             hCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCC-HHHHHHHhhccccCccccccCCCCHHHHHHHcC-CchhhH
Q 040043          211 FGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNN-YQLAEYIIKKTKVDKNCRNYTNQTALDVLKESG-TKEAFS  288 (539)
Q Consensus       211 ~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~-~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~-~~~~~~  288 (539)
                      .++.+++++|++.   +..++..+..|.||||+|+..++ ..++++|+ ..|+++|.+|..|+||||+|+..+ ..++++
T Consensus       385 ~~~~~iv~~Ll~~---gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll-~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~  460 (682)
T PHA02876        385 RNNVVIINTLLDY---GADIEALSQKIGTALHFALCGTNPYMSVKTLI-DRGANVNSKNKDLSTPLHYACKKNCKLDVIE  460 (682)
T ss_pred             cCCHHHHHHHHHC---CCCccccCCCCCchHHHHHHcCCHHHHHHHHH-hCCCCCCcCCCCCChHHHHHHHhCCcHHHHH
Confidence            9999999999987   56688899999999999998776 45688888 459999999999999999999876 578899


Q ss_pred             HHhhhccCCCCCc
Q 040043          289 SELQSVEEPNGSP  301 (539)
Q Consensus       289 ~~l~~~~~~~~~~  301 (539)
                      .+++.+++++...
T Consensus       461 lLl~~Gad~n~~d  473 (682)
T PHA02876        461 MLLDNGADVNAIN  473 (682)
T ss_pred             HHHHCCCCCCCCC
Confidence            9999988876543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-36  Score=320.48  Aligned_cols=259  Identities=20%  Similarity=0.293  Sum_probs=241.0

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHH-----HHHcCCHHHHHHHHhcCcccccccccCCChHHHHHH--
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHE-----ACRQGNAEISALLLKTNLFVATLLNQERQSAFLLAC--   73 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~-----Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~--   73 (539)
                      ||.|++.|+.++|+.|++.|.+ ++..+..|.||||.     |+..|+.++++.|++.|+++ +..+..|.||||+|+  
T Consensus        39 L~~A~~~~~~~ivk~Ll~~g~~-~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~  116 (480)
T PHA03100         39 LYLAKEARNIDVVKILLDNGAD-INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAISK  116 (480)
T ss_pred             hhhhhccCCHHHHHHHHHcCCC-CCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhc
Confidence            7999999999999999999987 67888999999999     99999999999999999998 788999999999999  


Q ss_pred             HcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcC--CHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHH
Q 040043           74 RRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRG--KIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKL  151 (539)
Q Consensus        74 ~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~  151 (539)
                      ..|+.+++++|+++|.+.+ ..+..|.||||.|+..|  +.++++.|++.++++ +..|..|.||||+|+..|+.+++++
T Consensus       117 ~~~~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~  194 (480)
T PHA03100        117 KSNSYSIVEYLLDNGANVN-IKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKF  194 (480)
T ss_pred             ccChHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHH
Confidence            9999999999999998877 67889999999999999  999999999999987 7788899999999999999999999


Q ss_pred             HHcCCCccccccccCC------CCHHHHHHHcCC--HHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhh
Q 040043          152 LLNSKPDMALQYNNNG------YTPLHQAAINGH--VKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES  223 (539)
Q Consensus       152 Ll~~~~~~~~~~d~~g------~tpLh~Aa~~g~--~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~  223 (539)
                      |+++|+++... +..|      .||||.|+..|+  .++++.|++.+ .+++..|..|.||||+|+..++.+++++|++.
T Consensus       195 Ll~~ga~~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g-~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  272 (480)
T PHA03100        195 LLDNGADINAG-DIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG-VPINIKDVYGFTPLHYAVYNNNPEFVKYLLDL  272 (480)
T ss_pred             HHHcCCCccCC-CCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999876 7777      899999999999  99999999886 45788999999999999999999999999987


Q ss_pred             cccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCcccccc
Q 040043          224 FDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNY  269 (539)
Q Consensus       224 ~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~  269 (539)
                         +++++.+|..|.||||+|+..++.+++++|++. |++++..+.
T Consensus       273 ---gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~-g~~i~~i~~  314 (480)
T PHA03100        273 ---GANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN-GPSIKTIIE  314 (480)
T ss_pred             ---CCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhc-CCCHHHHHH
Confidence               557899999999999999999999999999954 888876543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.4e-36  Score=310.71  Aligned_cols=258  Identities=24%  Similarity=0.328  Sum_probs=227.5

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCccc----------------------c
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFV----------------------A   58 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~----------------------~   58 (539)
                      ||.|++.|+.++|++|++.|++ ++..+..|.||||.|+..|+.+++++|++.|++.                      .
T Consensus        39 L~~A~~~g~~~iv~~Ll~~Ga~-~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~  117 (434)
T PHA02874         39 LIDAIRSGDAKIVELFIKHGAD-INHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDV  117 (434)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCC
Confidence            6899999999999999999988 6788999999999999999999999999887543                      2


Q ss_pred             cccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHh
Q 040043           59 TLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLH  138 (539)
Q Consensus        59 ~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh  138 (539)
                      +..+..|.||||+|+..|+.+++++|++++++++ ..+.+|.||||+|+..|+.++++.|++.+++. +..|..|.||||
T Consensus       118 n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n-~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~~g~tpL~  195 (434)
T PHA02874        118 NIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN-IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGESPLH  195 (434)
T ss_pred             CCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHH
Confidence            4567889999999999999999999999999887 57889999999999999999999999999877 778999999999


Q ss_pred             HHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhC-ChhHH
Q 040043          139 YASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG-KYNAF  217 (539)
Q Consensus       139 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~-~~~~v  217 (539)
                      +|+..|+.+++++|++.|+++... +..|.||||.|+..+. +.+..|+.  ...++..|..|+||||+|+..+ +.+++
T Consensus       196 ~A~~~g~~~iv~~Ll~~g~~i~~~-~~~g~TpL~~A~~~~~-~~i~~Ll~--~~~in~~d~~G~TpLh~A~~~~~~~~iv  271 (434)
T PHA02874        196 NAAEYGDYACIKLLIDHGNHIMNK-CKNGFTPLHNAIIHNR-SAIELLIN--NASINDQDIDGSTPLHHAINPPCDIDII  271 (434)
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcCC-CCCCCCHHHHHHHCCh-HHHHHHHc--CCCCCCcCCCCCCHHHHHHhcCCcHHHH
Confidence            999999999999999999998776 8899999999999876 56666663  3457889999999999999876 78999


Q ss_pred             HHHHhhcccccccccccCCCCcHHHHHHHcC-CHHHHHHHhhccccCcccccc
Q 040043          218 IFLAESFDFTGLLHQQDQFGNTVLHLAILRN-NYQLAEYIIKKTKVDKNCRNY  269 (539)
Q Consensus       218 ~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~-~~~iv~~Ll~~~~~~~~~~n~  269 (539)
                      ++|++.   +.+++.+|..|+||||+|+..+ ..++++.|+.. ++.++..+.
T Consensus       272 ~~Ll~~---gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~-~~~~~~~~~  320 (434)
T PHA02874        272 DILLYH---KADISIKDNKGENPIDTAFKYINKDPVIKDIIAN-AVLIKEADK  320 (434)
T ss_pred             HHHHHC---cCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHh-cCchhhccc
Confidence            999987   6678999999999999999987 67788888854 554444333

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=313.59  Aligned_cols=276  Identities=17%  Similarity=0.212  Sum_probs=195.3

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||.||+.|+.++|+.|++.+.+ ++.+|..|.||||+||..|+.++++.|++.+....   ...+.+|++.|+..++.++
T Consensus        41 Lh~A~~~g~~e~vk~Ll~~gad-vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~---~~~~~~~l~~a~~~~~~ei  116 (477)
T PHA02878         41 LHQAVEARNLDVVKSLLTRGHN-VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS---VFYTLVAIKDAFNNRNVEI  116 (477)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccc---cccchhhHHHHHHcCCHHH
Confidence            4555555555555555555544 45555555555555555555555555555443221   1334455555555555555


Q ss_pred             HHHHHhCCcccccccCCCCCcHHHHHHHc--CCHHHHHHHHhcCCccccccCCC-CChHHhHHHHcCCHHHHHHHHcCCC
Q 040043           81 VKLMLNQSWLMEFEEDRDESTPLHVAISR--GKIDIVKEILKVRPSFCEQADKN-RCLPLHYASRIGNVEITKLLLNSKP  157 (539)
Q Consensus        81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~--g~~~~v~~LL~~~~~~~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~~~  157 (539)
                      ++.|+..+.......+   ...+......  .+.++++.|++.++++ +..|.. |.||||+|+..|+.+++++|++.|+
T Consensus       117 ~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ga  192 (477)
T PHA02878        117 FKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLLSYGA  192 (477)
T ss_pred             HHHHHhCcccCcccCc---HHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCC
Confidence            5555544322110000   0001100011  1234777777777776 666777 9999999999999999999999999


Q ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHh-CChhHHHHHHhhcccccccccccC-
Q 040043          158 DMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRF-GKYNAFIFLAESFDFTGLLHQQDQ-  235 (539)
Q Consensus       158 ~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~-~~~~~v~~Ll~~~~~~~~~~~~d~-  235 (539)
                      +++.. |..|.||||.|+..|+.++++.|++.+. +++..|..|+||||+|+.. ++.+++++|++.   +..++.++. 
T Consensus       193 d~n~~-d~~g~tpLh~A~~~~~~~iv~~Ll~~ga-~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~---gadvn~~~~~  267 (477)
T PHA02878        193 NVNIP-DKTNNSPLHHAVKHYNKPIVHILLENGA-STDARDKCGNTPLHISVGYCKDYDILKLLLEH---GVDVNAKSYI  267 (477)
T ss_pred             CCCCc-CCCCCCHHHHHHHhCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHc---CCCCCccCCC
Confidence            99876 9999999999999999999999998775 4789999999999999976 689999999987   566788875 


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcC-CchhhHHHhh
Q 040043          236 FGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESG-TKEAFSSELQ  292 (539)
Q Consensus       236 ~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~-~~~~~~~~l~  292 (539)
                      .|+||||+|  .++.+++++|++ .|+|+|.+|..|.|||++|...+ ..+..+.++.
T Consensus       268 ~g~TpLh~A--~~~~~~v~~Ll~-~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~  322 (477)
T PHA02878        268 LGLTALHSS--IKSERKLKLLLE-YGADINSLNSYKLTPLSSAVKQYLCINIGRILIS  322 (477)
T ss_pred             CCCCHHHHH--ccCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHH
Confidence            799999999  577899999995 59999999999999999998754 3344444444

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.6e-35  Score=309.37  Aligned_cols=279  Identities=15%  Similarity=0.154  Sum_probs=241.0

Q ss_pred             cccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHc--CCHHHHHHHHhcCcccccccccCCChHHHHHHHcC------
Q 040043            5 TGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQ--GNAEISALLLKTNLFVATLLNQERQSAFLLACRRG------   76 (539)
Q Consensus         5 a~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~--g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g------   76 (539)
                      +...+.++|+.|++.|.+ ++.+ ..|.||||.++..  ++.+++++|++.|+++. ..+ .+.||||.|+.++      
T Consensus        11 ~~~~~~~~v~~LL~~Gad-vN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn-~~~-~~~tpL~~a~~~~~~~~~~   86 (494)
T PHA02989         11 SDTVDKNALEFLLRTGFD-VNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVN-YKG-YIETPLCAVLRNREITSNK   86 (494)
T ss_pred             CCcCcHHHHHHHHHcCCC-cccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCcc-CCC-CCCCcHHHHHhccCcchhh
Confidence            446889999999999988 6666 5799999876654  37899999999999884 344 5789999998754      


Q ss_pred             CHHHHHHHHhCCcccccccCCCCCcHHHHHHHc---CCHHHHHHHHhcCCccccccCCCCChHHhHHHHc--CCHHHHHH
Q 040043           77 HVNVVKLMLNQSWLMEFEEDRDESTPLHVAISR---GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRI--GNVEITKL  151 (539)
Q Consensus        77 ~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~--g~~~~v~~  151 (539)
                      +.+++++|+++|++++ ..+..|.||||.|+..   |+.++++.|+++|+++.+..|..|+||||+|+..  ++.+++++
T Consensus        87 ~~~iv~~Ll~~Gadin-~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~  165 (494)
T PHA02989         87 IKKIVKLLLKFGADIN-LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKI  165 (494)
T ss_pred             HHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHH
Confidence            4789999999999988 6788999999998865   6789999999999987567899999999998764  68999999


Q ss_pred             HHcCCCccccccccCCCCHHHHHHHcC----CHHHHHHHHHhCCCccccccCCCCcHHHHHHHhC------ChhHHHHHH
Q 040043          152 LLNSKPDMALQYNNNGYTPLHQAAING----HVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG------KYNAFIFLA  221 (539)
Q Consensus       152 Ll~~~~~~~~~~d~~g~tpLh~Aa~~g----~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~------~~~~v~~Ll  221 (539)
                      |+++|++++...+..|.||||.|++.+    +.++++.|++.+.+ ++..|..+.|+||.++..+      ..+++++|.
T Consensus       166 Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~-vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~  244 (494)
T PHA02989        166 LLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN-IETNNNGSESVLESFLDNNKILSKKEFKVLNFIL  244 (494)
T ss_pred             HHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC-ccccCCccccHHHHHHHhchhhcccchHHHHHHH
Confidence            999999998755889999999998764    89999999998754 7888889999999887654      456677665


Q ss_pred             hhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhc
Q 040043          222 ESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSV  294 (539)
Q Consensus       222 ~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~  294 (539)
                      .    +..+|.+|..|+||||+|+..++.+++++|++ .|+|+|.+|..|.|||++|...++.++++.+++..
T Consensus       245 ~----~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~-~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~  312 (494)
T PHA02989        245 K----YIKINKKDKKGFNPLLISAKVDNYEAFNYLLK-LGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLK  312 (494)
T ss_pred             h----CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            4    35789999999999999999999999999995 59999999999999999999999999999998764

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.5e-35  Score=314.44  Aligned_cols=279  Identities=19%  Similarity=0.175  Sum_probs=232.1

Q ss_pred             Cceec--ccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCC--HHHHHHHHhcCcccccccccCCChHHHHH----
Q 040043            1 IKAAT--GFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGN--AEISALLLKTNLFVATLLNQERQSAFLLA----   72 (539)
Q Consensus         1 Lh~Aa--~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~--~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A----   72 (539)
                      ||.|+  ..|+.++|++|++.|.+ ++.+|..|.||||+|++.|+  .+++++|++.|+++ +.+|..|.||||.|    
T Consensus       181 LH~A~~n~~~~~eIVklLLe~GAD-VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a  258 (764)
T PHA02716        181 LHAYLGNMYVDIDILEWLCNNGVN-VNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIINI  258 (764)
T ss_pred             HHHHHHhccCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhh
Confidence            56654  35789999999999988 88999999999999999995  59999999999987 67899999999975    


Q ss_pred             ---------------------------------HHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHH--cCCHHHHHH
Q 040043           73 ---------------------------------CRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAIS--RGKIDIVKE  117 (539)
Q Consensus        73 ---------------------------------~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~  117 (539)
                                                       +..|+.+++++|+++|++++ ..|..|.||||+|+.  .++.++++.
T Consensus       259 ~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN-~kD~~G~TPLH~Aaa~~~~~~eIVkl  337 (764)
T PHA02716        259 DNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLH-YKDSAGRTCLHQYILRHNISTDIIKL  337 (764)
T ss_pred             hccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCcee-ccCCCCCCHHHHHHHHhCCCchHHHH
Confidence                                             44578899999999999877 678999999999875  467899999


Q ss_pred             HHhcCCccccccCCCCChHHhHHHH--------------cCCHHHHHHHHcCCCccccccccCCCCHHHH----HHHcCC
Q 040043          118 ILKVRPSFCEQADKNRCLPLHYASR--------------IGNVEITKLLLNSKPDMALQYNNNGYTPLHQ----AAINGH  179 (539)
Q Consensus       118 LL~~~~~~~~~~d~~g~tpLh~A~~--------------~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~----Aa~~g~  179 (539)
                      |++.+.++ +.+|..|+||||+|+.              .++.+++++|+++|++++.. |..|.||||.    |...++
T Consensus       338 LLe~GADI-N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~k-n~~G~TPLh~y~~~a~n~~~  415 (764)
T PHA02716        338 LHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAV-NCLGYTPLTSYICTAQNYMY  415 (764)
T ss_pred             HHHcCCCC-ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCc-CCCCCChHHHHHHHHHhcCh
Confidence            99999887 8889999999999875              36899999999999999886 9999999994    233567


Q ss_pred             HHHHHHHHHhCCC------------------------------------------------------------ccccccC
Q 040043          180 VKILEAFIASSPT------------------------------------------------------------SFNCLTT  199 (539)
Q Consensus       180 ~~~v~~Ll~~~~~------------------------------------------------------------~~~~~d~  199 (539)
                      .++++.|++.+..                                                            .++..|.
T Consensus       416 ~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~  495 (764)
T PHA02716        416 YDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCET  495 (764)
T ss_pred             HHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCC
Confidence            8888887764210                                                            1133467


Q ss_pred             CCCcHHHHHHHhCChh-----HHHHHHhhcccccccccccCCCCcHHHHHHHcCCH-----HHHHHHhhccccCcccccc
Q 040043          200 DGDTVFHLALRFGKYN-----AFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNY-----QLAEYIIKKTKVDKNCRNY  269 (539)
Q Consensus       200 ~g~t~Lh~Av~~~~~~-----~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~-----~iv~~Ll~~~~~~~~~~n~  269 (539)
                      .|+||||+|+..|+.+     ++++|++.   ++++|.+|.+|+||||+|++.|+.     ++|+.|++ .|++++..  
T Consensus       496 ~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~---GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~-~ga~~~~~--  569 (764)
T PHA02716        496 SGMTPLHVSIISHTNANIVMDSFVYLLSI---QYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILD-KRPNVDIV--  569 (764)
T ss_pred             CCCCHHHHHHHcCCccchhHHHHHHHHhC---CCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHh-cCCCcchH--
Confidence            8999999999998874     45999887   677999999999999999999966     99999995 48888776  


Q ss_pred             CCCCHHHHHHHcCCchhhHHHhhhc
Q 040043          270 TNQTALDVLKESGTKEAFSSELQSV  294 (539)
Q Consensus       270 ~g~t~l~~a~~~~~~~~~~~~l~~~  294 (539)
                          .+.++...++.+....+..++
T Consensus       570 ----~l~~~~~~~~~~~~~ll~~~~  590 (764)
T PHA02716        570 ----IIFLDKCYANGKFPSLLLSED  590 (764)
T ss_pred             ----HHHHHhhhhhhHHHHHHHHcc
Confidence                378887777776666665543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.6e-35  Score=311.54  Aligned_cols=259  Identities=19%  Similarity=0.193  Sum_probs=233.1

Q ss_pred             CceecccC---cHHHHHHHHHhCChhhhccccCCCCHHHHHHHcC-CHHHHHHHHhcCcccccccccCCChHHHHHH--H
Q 040043            1 IKAATGFG---HIELVTEIIKLCPQLVAAVNEKLETPLHEACRQG-NAEISALLLKTNLFVATLLNQERQSAFLLAC--R   74 (539)
Q Consensus         1 Lh~Aa~~g---~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g-~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~--~   74 (539)
                      ||.|+..|   +.++++.|++.|.+ ++.++..|.||||+|+..| +.+++++|++.|+++ +..+..|.||||+|+  .
T Consensus        51 Lh~a~~~~~~~~~~iv~~Ll~~Gad-in~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~~~  128 (471)
T PHA03095         51 LHLYLHYSSEKVKDIVRLLLEAGAD-VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRTPLHVYLSGF  128 (471)
T ss_pred             HHHHHHhcCCChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhCC
Confidence            68899988   99999999999988 7889999999999999999 599999999999987 678999999999999  5


Q ss_pred             cCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcC--CHHHHHHHHhcCCccccccCCCCChHHhHHHHc--CCHHHHH
Q 040043           75 RGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRG--KIDIVKEILKVRPSFCEQADKNRCLPLHYASRI--GNVEITK  150 (539)
Q Consensus        75 ~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~--g~~~~v~  150 (539)
                      .++.+++++|+++|++++ ..+..|.||||+|+..+  +.++++.|++.+++... .|..|.||||+|+..  ++.++++
T Consensus       129 ~~~~~iv~~Ll~~gad~~-~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~-~d~~g~t~Lh~~~~~~~~~~~i~~  206 (471)
T PHA03095        129 NINPKVIRLLLRKGADVN-ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA-VDDRFRSLLHHHLQSFKPRARIVR  206 (471)
T ss_pred             cCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHHCCCcHHHHH
Confidence            678999999999999887 67899999999999876  68999999999998844 499999999999975  7889999


Q ss_pred             HHHcCCCccccccccCCCCHHHHHHHcCCH--HHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhccccc
Q 040043          151 LLLNSKPDMALQYNNNGYTPLHQAAINGHV--KILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTG  228 (539)
Q Consensus       151 ~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~--~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~  228 (539)
                      .|++.|++++.. |..|.||||+|+..|+.  .+++.+++.+ .+++..|..|+||||+|+..|+.+++++|++.   ++
T Consensus       207 ~Ll~~g~~~~~~-d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g-~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~---ga  281 (471)
T PHA03095        207 ELIRAGCDPAAT-DMLGNTPLHSMATGSSCKRSLVLPLLIAG-ISINARNRYGQTPLHYAAVFNNPRACRRLIAL---GA  281 (471)
T ss_pred             HHHHcCCCCccc-CCCCCCHHHHHHhcCCchHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CC
Confidence            999999999987 99999999999999975  5777777765 55899999999999999999999999999987   66


Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCcccccc
Q 040043          229 LLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNY  269 (539)
Q Consensus       229 ~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~  269 (539)
                      +++.+|.+|+||||+|+..++.++++.|++. +.+++....
T Consensus       282 d~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~-~~~~~~~~~  321 (471)
T PHA03095        282 DINAVSSDGNTPLSLMVRNNNGRAVRAALAK-NPSAETVAA  321 (471)
T ss_pred             CCcccCCCCCCHHHHHHHhCCHHHHHHHHHh-CCCHHHHHH
Confidence            7899999999999999999999999999954 677665443

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.1e-35  Score=282.34  Aligned_cols=234  Identities=21%  Similarity=0.269  Sum_probs=133.0

Q ss_pred             CCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 040043           42 GNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKV  121 (539)
Q Consensus        42 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~  121 (539)
                      ++.+++++|++.++.   ..|.+|.||||+|+..|+.+++++|++++++.+.   .+|.||||+|+..|+.++++.|++.
T Consensus        10 ~~~~~~~~Lis~~a~---~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~---~d~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791         10 KSKQLKSFLSSKDAF---KADVHGHSALYYAIADNNVRLVCTLLNAGALKNL---LENEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             CHHHHHHHHHhCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC---CCCCCHHHHHHHCCCHHHHHHHHHC
Confidence            344555555555442   2455555555555555555555555555544331   1245566666666666666666655


Q ss_pred             CCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCC-CCHHHHHHHcCCHHHHHHHHHhCCCccccccCC
Q 040043          122 RPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNG-YTPLHQAAINGHVKILEAFIASSPTSFNCLTTD  200 (539)
Q Consensus       122 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~  200 (539)
                      +.+. +..|..|+||||+|+..|+.+++++|+++|++++.. +..| .||||+|+..|+.++++.|++.++...+.  ..
T Consensus        84 Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~-~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~--~~  159 (284)
T PHA02791         84 GMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AI  159 (284)
T ss_pred             CCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-CCCCCcHHHHHHHHcCCHHHHHHHHhcCCccccc--cc
Confidence            5544 445556666666666666666666666666665543 4444 35666666666666666666554332111  23


Q ss_pred             CCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcH-HHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHH
Q 040043          201 GDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTV-LHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLK  279 (539)
Q Consensus       201 g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~-Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~  279 (539)
                      |.||||+|+.+|+.+++++|++.   ++.++.+|..|.|| ||+|+..++.+++++|+ ..|+++|.+|.+| |++    
T Consensus       160 g~TpLh~Aa~~g~~eiv~lLL~~---gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl-~~Ga~in~~~~~~-~~l----  230 (284)
T PHA02791        160 LLSCIHITIKNGHVDMMILLLDY---MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALF-KYDINIYSVNLEN-VLL----  230 (284)
T ss_pred             CccHHHHHHHcCCHHHHHHHHHC---CCCCCcccCCCCChHHHHHHHcCCHHHHHHHH-HCCCCCccCcccC-ccC----
Confidence            56666666666666666666665   33456666666655 67777777777776666 3366676666643 444    


Q ss_pred             HcCCchhhHHHhhhccC
Q 040043          280 ESGTKEAFSSELQSVEE  296 (539)
Q Consensus       280 ~~~~~~~~~~~l~~~~~  296 (539)
                        +..|+++.+|+...+
T Consensus       231 --~~~e~~~~ll~~~~~  245 (284)
T PHA02791        231 --DDAEIAKMIIEKHVE  245 (284)
T ss_pred             --CCHHHHHHHHHhhhh
Confidence              444566666665444

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.7e-35  Score=280.95  Aligned_cols=232  Identities=17%  Similarity=0.116  Sum_probs=205.6

Q ss_pred             cCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHh
Q 040043            7 FGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLN   86 (539)
Q Consensus         7 ~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~   86 (539)
                      .++.+++++|++.+..   .+|.+|+||||+|+..|+.++++.|++.+++...   .+|.||||+|+..|+.+++++|++
T Consensus         9 ~~~~~~~~~Lis~~a~---~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~---~d~~TpLh~Aa~~g~~eiV~lLL~   82 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF---KADVHGHSALYYAIADNNVRLVCTLLNAGALKNL---LENEFPLHQAATLEDTKIVKILLF   82 (284)
T ss_pred             cCHHHHHHHHHhCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC---CCCCCHHHHHHHCCCHHHHHHHHH
Confidence            5788999999998764   6899999999999999999999999999987632   247899999999999999999999


Q ss_pred             CCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCC-ChHHhHHHHcCCHHHHHHHHcCCCcccccccc
Q 040043           87 QSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNR-CLPLHYASRIGNVEITKLLLNSKPDMALQYNN  165 (539)
Q Consensus        87 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~  165 (539)
                      ++.+++ ..|..|.||||+|+..|+.++++.|++.++++ +..+..| .||||+|+..|+.+++++|++++++...  ..
T Consensus        83 ~Gadvn-~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d--~~  158 (284)
T PHA02791         83 SGMDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LA  158 (284)
T ss_pred             CCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccc--cc
Confidence            998877 67889999999999999999999999999887 6677777 5999999999999999999998765421  13


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcH-HHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHH
Q 040043          166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTV-FHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLA  244 (539)
Q Consensus       166 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A  244 (539)
                      .|.||||+|+++|+.++++.|++.++ +++..|..|.|| ||+|+.+|+.+++++|++.   ++.+|.+|..| |+|   
T Consensus       159 ~g~TpLh~Aa~~g~~eiv~lLL~~gA-d~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~---Ga~in~~~~~~-~~l---  230 (284)
T PHA02791        159 ILLSCIHITIKNGHVDMMILLLDYMT-STNTNNSLLFIPDIKLAIDNKDLEMLQALFKY---DINIYSVNLEN-VLL---  230 (284)
T ss_pred             cCccHHHHHHHcCCHHHHHHHHHCCC-CCCcccCCCCChHHHHHHHcCCHHHHHHHHHC---CCCCccCcccC-ccC---
Confidence            58999999999999999999999875 478888889987 9999999999999999987   66789999855 666   


Q ss_pred             HHcCCHHHHHHHhhc
Q 040043          245 ILRNNYQLAEYIIKK  259 (539)
Q Consensus       245 ~~~~~~~iv~~Ll~~  259 (539)
                         ++.|++++||++
T Consensus       231 ---~~~e~~~~ll~~  242 (284)
T PHA02791        231 ---DDAEIAKMIIEK  242 (284)
T ss_pred             ---CCHHHHHHHHHh
Confidence               888999999976

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=301.17  Aligned_cols=243  Identities=23%  Similarity=0.287  Sum_probs=219.8

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcC
Q 040043           31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRG  110 (539)
Q Consensus        31 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  110 (539)
                      .+++||.|+..|+.+++++|++.|+++ +..+.+|.||||+|+..|+.+++++|+++|+.++ ..+.++.||||.|+..|
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~t~L~~A~~~g   79 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINP-NFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD-VKYPDIESELHDAVEEG   79 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-ccCCCcccHHHHHHHCC
Confidence            578999999999999999999999887 5678899999999999999999999999998766 45678899999999999


Q ss_pred             CHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhC
Q 040043          111 KIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASS  190 (539)
Q Consensus       111 ~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~  190 (539)
                      +.++++.|++.++...+..+..|.||||+|+..|+.+++++|+++|++++.. +..|.||||.|+..|+.++++.|++.+
T Consensus        80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~-~~~g~tpLh~A~~~~~~~~v~~Ll~~g  158 (413)
T PHA02875         80 DVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP-NTDKFSPLHLAVMMGDIKGIELLIDHK  158 (413)
T ss_pred             CHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999998876777888999999999999999999999999999876 889999999999999999999999887


Q ss_pred             CCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCC-CcHHHHHHHcCCHHHHHHHhhccccCcccc--
Q 040043          191 PTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFG-NTVLHLAILRNNYQLAEYIIKKTKVDKNCR--  267 (539)
Q Consensus       191 ~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G-~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~--  267 (539)
                      . +++..|..|.||||+|+..|+.+++++|++.   +..++..+..| .||+|+|+..++.+++++|++ .|+|+|..  
T Consensus       159 ~-~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~---ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~-~gad~n~~~~  233 (413)
T PHA02875        159 A-CLDIEDCCGCTPLIIAMAKGDIAICKMLLDS---GANIDYFGKNGCVAALCYAIENNKIDIVRLFIK-RGADCNIMFM  233 (413)
T ss_pred             C-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH-CCcCcchHhh
Confidence            5 4788899999999999999999999999987   55677788777 489999999999999999995 59999875  


Q ss_pred             -ccCCCCHHHHHHHc
Q 040043          268 -NYTNQTALDVLKES  281 (539)
Q Consensus       268 -n~~g~t~l~~a~~~  281 (539)
                       +.+|.||++++...
T Consensus       234 ~~~~~~t~l~~~~~~  248 (413)
T PHA02875        234 IEGEECTILDMICNM  248 (413)
T ss_pred             cCCCchHHHHHHHhh
Confidence             67899999988654

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.9e-34  Score=296.29  Aligned_cols=252  Identities=19%  Similarity=0.255  Sum_probs=223.7

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||.|++.|+.++|++|++.|.+ ++.++..|.||||+|+..|+.+++++|++.|++. +..+.++.||||.|+..|+.++
T Consensus         6 L~~A~~~g~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g~~~~   83 (413)
T PHA02875          6 LCDAILFGELDIARRLLDIGIN-PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGDVKA   83 (413)
T ss_pred             HHHHHHhCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCCCHHH
Confidence            6889999999999999999887 6788889999999999999999999999999876 5567889999999999999999


Q ss_pred             HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccc
Q 040043           81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA  160 (539)
Q Consensus        81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  160 (539)
                      ++.|++.+.......+.+|.||||+|+..|+.++++.|++.+++. +..+..|.||||+|+..|+.+++++|+++|++++
T Consensus        84 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~  162 (413)
T PHA02875         84 VEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD  162 (413)
T ss_pred             HHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence            999999998776566778999999999999999999999999887 7789999999999999999999999999999988


Q ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCC-CcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCc
Q 040043          161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDG-DTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNT  239 (539)
Q Consensus       161 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g-~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T  239 (539)
                      .. |..|.||||+|+..|+.++++.|++.+++ ++..+..| .||+|+|+..++.+++++|++.+.........+..|.|
T Consensus       163 ~~-d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~-~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t  240 (413)
T PHA02875        163 IE-DCCGCTPLIIAMAKGDIAICKMLLDSGAN-IDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECT  240 (413)
T ss_pred             CC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchH
Confidence            76 99999999999999999999999998865 56677666 58999999999999999999986555445556888999


Q ss_pred             HHHHHHHcC---CHHHHHHHh
Q 040043          240 VLHLAILRN---NYQLAEYII  257 (539)
Q Consensus       240 ~Lh~A~~~~---~~~iv~~Ll  257 (539)
                      ||+.+....   ..+.++.++
T Consensus       241 ~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        241 ILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             HHHHHHhhcCCcccHHHHHHH
Confidence            999876542   345555554

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.5e-33  Score=293.25  Aligned_cols=278  Identities=21%  Similarity=0.232  Sum_probs=238.4

Q ss_pred             cHHHHHHHHHhCChhhhccccCCCCHHHHHHH--cCCHHHHHHHHhcCcccccccccCCChHHHHHHHc-----CCHHHH
Q 040043            9 HIELVTEIIKLCPQLVAAVNEKLETPLHEACR--QGNAEISALLLKTNLFVATLLNQERQSAFLLACRR-----GHVNVV   81 (539)
Q Consensus         9 ~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~--~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~-----g~~eiv   81 (539)
                      ..+.|+.|++.+.. ...  ..|.|+++.+..  .++.+++++|++.|+++ +..+..|.||||.|+.+     ++.+++
T Consensus        17 ~~~~v~~ll~~~~~-~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpL~~~~~n~~~~~~~~~iv   92 (489)
T PHA02798         17 KLSTVKLLIKSCNP-NEI--VNEYSIFQKYLQRDSPSTDIVKLFINLGANV-NGLDNEYSTPLCTILSNIKDYKHMLDIV   92 (489)
T ss_pred             cHHHHHHHHhcCCh-hhh--cccchHHHHHHhCCCCCHHHHHHHHHCCCCC-CCCCCCCCChHHHHHHhHHhHHhHHHHH
Confidence            57899999986532 222  457788775554  44899999999999988 66889999999999865     678999


Q ss_pred             HHHHhCCcccccccCCCCCcHHHHHHHcC---CHHHHHHHHhcCCccccccCCCCChHHhHHHHcCC---HHHHHHHHcC
Q 040043           82 KLMLNQSWLMEFEEDRDESTPLHVAISRG---KIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGN---VEITKLLLNS  155 (539)
Q Consensus        82 ~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~---~~~v~~Ll~~  155 (539)
                      ++|+++|++++ ..+.+|.||||+|+..+   +.++++.|++.|+++ +..|..|.||||+|+..++   .+++++|++.
T Consensus        93 ~~Ll~~GadiN-~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~  170 (489)
T PHA02798         93 KILIENGADIN-KKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK  170 (489)
T ss_pred             HHHHHCCCCCC-CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHh
Confidence            99999999987 67889999999999976   789999999999987 8899999999999999998   9999999999


Q ss_pred             CCccccccccCCCCHHHHHHHc----CCHHHHHHHHHhCCCccccccCCCCcHHH-------HHHHhCChhHHHHHHhhc
Q 040043          156 KPDMALQYNNNGYTPLHQAAIN----GHVKILEAFIASSPTSFNCLTTDGDTVFH-------LALRFGKYNAFIFLAESF  224 (539)
Q Consensus       156 ~~~~~~~~d~~g~tpLh~Aa~~----g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh-------~Av~~~~~~~v~~Ll~~~  224 (539)
                      |++++...+..|.||||.++..    ++.++++.|++.+.. ++..+..|+++++       .+...+..+++.+|+.  
T Consensus       171 gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~-i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~--  247 (489)
T PHA02798        171 GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI-INKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS--  247 (489)
T ss_pred             CCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC-cccCCccccchHHHHHHHHHhhcccchHHHHHHHHh--
Confidence            9999876566899999998764    479999999998754 6777888888876       2344567788888765  


Q ss_pred             ccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCC
Q 040043          225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPN  298 (539)
Q Consensus       225 ~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~  298 (539)
                        +.++|.+|..|+||||+|+..++.+++++|++ .|+|+|.+|..|+|||++|.+.++.+++..+++.+.+++
T Consensus       248 --~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~-~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        248 --YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQ-LGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             --cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHH-cCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence              35689999999999999999999999999995 599999999999999999999999999999998766553

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-33  Score=239.78  Aligned_cols=175  Identities=30%  Similarity=0.395  Sum_probs=100.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcC-CCccccccccCCCCHHHHHHH
Q 040043           98 DESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNS-KPDMALQYNNNGYTPLHQAAI  176 (539)
Q Consensus        98 ~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~Aa~  176 (539)
                      +|+||||+||+.|+.+++.+|+......++..|..||||||.|+..|+.|+|+.|+.+ |++++.. ++.|.||||+|+.
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~-tn~G~T~LHyAag  115 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNAT-TNGGQTCLHYAAG  115 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCccee-cCCCcceehhhhc
Confidence            4444444444444444444444322222244455555555555555555555555554 4555444 5555555555555


Q ss_pred             cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHH
Q 040043          177 NGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI  256 (539)
Q Consensus       177 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L  256 (539)
                      .|+.++.+.|++.+ ..++..|..|+||||-|+.-|+.+++++|+..   ++-+|.+|+.|+||||.|...++.+...+|
T Consensus       116 K~r~eIaqlLle~g-a~i~~kD~~~qtplHRAAavGklkvie~Li~~---~a~~n~qDk~G~TpL~~al~e~~~d~a~lL  191 (226)
T KOG4412|consen  116 KGRLEIAQLLLEKG-ALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQ---GAPLNTQDKYGFTPLHHALAEGHPDVAVLL  191 (226)
T ss_pred             CChhhHHHHHHhcC-CCCcccccccCchhHHHHhccchhhHHHHHhc---CCCCCcccccCccHHHHHHhccCchHHHHH
Confidence            55555555555444 33455555555555555555555555555554   345777888888888888777777777777


Q ss_pred             hhccccCccccccCCCCHHHHHH
Q 040043          257 IKKTKVDKNCRNYTNQTALDVLK  279 (539)
Q Consensus       257 l~~~~~~~~~~n~~g~t~l~~a~  279 (539)
                      +++ |++++..|++| ||+.++.
T Consensus       192 V~~-gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  192 VRA-GADTDREDKEG-TALRIAC  212 (226)
T ss_pred             HHh-ccceeeccccC-chHHHHH
Confidence            744 78888888877 8877664

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.4e-32  Score=288.37  Aligned_cols=263  Identities=21%  Similarity=0.255  Sum_probs=221.0

Q ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHH
Q 040043           25 AAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLH  104 (539)
Q Consensus        25 ~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh  104 (539)
                      +..+..+.||||.||+.|+.+++++|++.|+++ +..|.+|.||||+||..|+.++++.|++.+....   ...+.+|++
T Consensus        31 ~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadv-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~---~~~~~~~l~  106 (477)
T PHA02878         31 TSASLIPFIPLHQAVEARNLDVVKSLLTRGHNV-NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS---VFYTLVAIK  106 (477)
T ss_pred             CcccccCcchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccc---cccchhhHH
Confidence            445567899999999999999999999999887 6789999999999999999999999999875544   256789999


Q ss_pred             HHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcC--CHHHHHHHHcCCCccccccccC-CCCHHHHHHHcCCHH
Q 040043          105 VAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG--NVEITKLLLNSKPDMALQYNNN-GYTPLHQAAINGHVK  181 (539)
Q Consensus       105 ~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~-g~tpLh~Aa~~g~~~  181 (539)
                      .|+..++.++++.|+..+.......+   ...+......+  +.+++++|+++|++++.. +.. |.||||+|+.+|+.+
T Consensus       107 ~a~~~~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~-~~~~g~tpLh~A~~~~~~~  182 (477)
T PHA02878        107 DAFNNRNVEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEITKLLLSYGADINMK-DRHKGNTALHYATENKDQR  182 (477)
T ss_pred             HHHHcCCHHHHHHHHhCcccCcccCc---HHHHhhccchhhHHHHHHHHHHHcCCCCCcc-CCCCCCCHHHHHHhCCCHH
Confidence            99999999999999986433211111   11111111122  346999999999999887 777 999999999999999


Q ss_pred             HHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHc-CCHHHHHHHhhcc
Q 040043          182 ILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILR-NNYQLAEYIIKKT  260 (539)
Q Consensus       182 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~-~~~~iv~~Ll~~~  260 (539)
                      +++.|++.+.+ ++..|..|.||||.|+..++.+++++|++.   +..++.+|..|+||||+|+.. ++.+++++|++ .
T Consensus       183 iv~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~---ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~-~  257 (477)
T PHA02878        183 LTELLLSYGAN-VNIPDKTNNSPLHHAVKHYNKPIVHILLEN---GASTDARDKCGNTPLHISVGYCKDYDILKLLLE-H  257 (477)
T ss_pred             HHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHH-c
Confidence            99999998754 788999999999999999999999999987   567899999999999999976 68999999995 5


Q ss_pred             ccCcccccc-CCCCHHHHHHHcCCchhhHHHhhhccCCCCCch
Q 040043          261 KVDKNCRNY-TNQTALDVLKESGTKEAFSSELQSVEEPNGSPK  302 (539)
Q Consensus       261 ~~~~~~~n~-~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~  302 (539)
                      |+++|.++. .|.||||+|  .++.+.++.+++.+++++....
T Consensus       258 gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~  298 (477)
T PHA02878        258 GVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNS  298 (477)
T ss_pred             CCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCC
Confidence            999999986 799999999  5677889999999888775433

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.5e-33  Score=237.01  Aligned_cols=208  Identities=27%  Similarity=0.404  Sum_probs=132.1

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCc-ccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHc
Q 040043           31 LETPLHEACRQGNAEISALLLKTNL-FVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISR  109 (539)
Q Consensus        31 g~TpLh~Aa~~g~~~iv~~Ll~~~~-~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  109 (539)
                      +.++.+.+++..-..-++.+++..+ .++...|.+|+||||+||..|+.+++.+|++......+..|..|+||||+|+..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            3456666666666666666666665 333333346667777777777777776666433332234566677777777777


Q ss_pred             CCHHHHHHHHhc-CCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHH
Q 040043          110 GKIDIVKEILKV-RPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA  188 (539)
Q Consensus       110 g~~~~v~~LL~~-~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~  188 (539)
                      |+.++++.|+.+ ++++ +..+..|+||||+|+..|..|++++|+++|+.+... |..|.||||-|+.-|..+++++|+.
T Consensus        83 g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~k-D~~~qtplHRAAavGklkvie~Li~  160 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIK-DKQGQTPLHRAAAVGKLKVIEYLIS  160 (226)
T ss_pred             CcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCCCCccc-ccccCchhHHHHhccchhhHHHHHh
Confidence            777777777766 4444 666666777777777777777777777777666554 6667777777777777777776666


Q ss_pred             hCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHH
Q 040043          189 SSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAI  245 (539)
Q Consensus       189 ~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~  245 (539)
                      .+ ..++..|+.|+||||.|...++.++..+|++.   ++.....|++| ||+-.|+
T Consensus       161 ~~-a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~---gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  161 QG-APLNTQDKYGFTPLHHALAEGHPDVAVLLVRA---GADTDREDKEG-TALRIAC  212 (226)
T ss_pred             cC-CCCCcccccCccHHHHHHhccCchHHHHHHHh---ccceeeccccC-chHHHHH
Confidence            55 44666677777777777666666666666665   34455666666 6665554

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.6e-32  Score=264.45  Aligned_cols=183  Identities=26%  Similarity=0.410  Sum_probs=166.3

Q ss_pred             CceecccCcHHHHHHHHHhCChh--------hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQL--------VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLA   72 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~--------l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A   72 (539)
                      |-+||++||.++|++|++.+...        .+-.+.+|-+||-.|+..||+++|+.|+++++++ +.....+.|||--|
T Consensus        46 L~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraA  124 (615)
T KOG0508|consen   46 LLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAA  124 (615)
T ss_pred             eeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHH
Confidence            45899999999999999965321        2334567889999999999999999999999877 55666778999999


Q ss_pred             HHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHH
Q 040043           73 CRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL  152 (539)
Q Consensus        73 ~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~L  152 (539)
                      |.-|+.|+|++|++++++++ ..|..|.|.||+|+..|+.+++++|++.++++ +.++..|+|+||.|+..|+++++++|
T Consensus       125 CfDG~leivKyLvE~gad~~-IanrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG~vdivq~L  202 (615)
T KOG0508|consen  125 CFDGHLEIVKYLVEHGADPE-IANRHGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESGSVDIVQLL  202 (615)
T ss_pred             HhcchhHHHHHHHHcCCCCc-ccccCCCeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhcccHHHHHHH
Confidence            99999999999999999998 78999999999999999999999999999998 88999999999999999999999999


Q ss_pred             HcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHH
Q 040043          153 LNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA  188 (539)
Q Consensus       153 l~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~  188 (539)
                      +.+|+.+..  |..|.|||..|+..|+.++++.|+.
T Consensus       203 l~~ga~i~~--d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  203 LKHGAKIDV--DGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HhCCceeee--cCCCCchHHHHhhhcchHHHHHHhc
Confidence            999998875  7889999999999999999999884

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.6e-32  Score=286.48  Aligned_cols=244  Identities=20%  Similarity=0.240  Sum_probs=213.4

Q ss_pred             cCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcC------CHHHHHHHHhcCcccccccccCCChHHHHHHHc---CC
Q 040043            7 FGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQG------NAEISALLLKTNLFVATLLNQERQSAFLLACRR---GH   77 (539)
Q Consensus         7 ~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~---g~   77 (539)
                      .|+.++|+.|++.|.+ ++.++ .+.||||.|+..+      +.+++++|++.|+++ +.++..|.||||.|+..   |+
T Consensus        47 ~~~~~iv~~Ll~~GAd-vn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~  123 (494)
T PHA02989         47 DVKIKIVKLLIDNGAD-VNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINN  123 (494)
T ss_pred             CCChHHHHHHHHcCCC-ccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCc
Confidence            3579999999999988 56665 6799999998764      478999999999998 67899999999998765   67


Q ss_pred             HHHHHHHHhCCcccccccCCCCCcHHHHHHHc--CCHHHHHHHHhcCCccccccCCCCChHHhHHHHcC----CHHHHHH
Q 040043           78 VNVVKLMLNQSWLMEFEEDRDESTPLHVAISR--GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG----NVEITKL  151 (539)
Q Consensus        78 ~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~--g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g----~~~~v~~  151 (539)
                      .+++++|+++|++++...+..|.||||+|+..  ++.++++.|++.++++....+..|.||||.|+..+    +.+++++
T Consensus       124 ~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~  203 (494)
T PHA02989        124 CDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKY  203 (494)
T ss_pred             HHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHH
Confidence            99999999999998446889999999998865  68999999999999885446889999999998764    8999999


Q ss_pred             HHcCCCccccccccCCCCHHHHHHHcC------CHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcc
Q 040043          152 LLNSKPDMALQYNNNGYTPLHQAAING------HVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFD  225 (539)
Q Consensus       152 Ll~~~~~~~~~~d~~g~tpLh~Aa~~g------~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~  225 (539)
                      |++.|++++.. |..+.+|||.++..+      ..++++.++. + .+++.+|..|+||||+|+..++.+++++|++.  
T Consensus       204 Ll~~Ga~vn~~-~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~-advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~--  278 (494)
T PHA02989        204 LIKKGVNIETN-NNGSESVLESFLDNNKILSKKEFKVLNFILK-Y-IKINKKDKKGFNPLLISAKVDNYEAFNYLLKL--  278 (494)
T ss_pred             HHhCCCCcccc-CCccccHHHHHHHhchhhcccchHHHHHHHh-C-CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHc--
Confidence            99999999876 778999999877643      4677776664 4 56899999999999999999999999999987  


Q ss_pred             cccccccccCCCCcHHHHHHHcCCHHHHHHHhhc
Q 040043          226 FTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK  259 (539)
Q Consensus       226 ~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  259 (539)
                       +++++.+|..|+||||+|+..++.++++.|++.
T Consensus       279 -Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        279 -GDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             -CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence             667999999999999999999999999999964

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-31  Score=288.16  Aligned_cols=293  Identities=15%  Similarity=0.080  Sum_probs=207.6

Q ss_pred             Cceec---ccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHH----HHHHHHhcCcccccccccCCChHHHHHH
Q 040043            1 IKAAT---GFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAE----ISALLLKTNLFVATLLNQERQSAFLLAC   73 (539)
Q Consensus         1 Lh~Aa---~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~----iv~~Ll~~~~~~~~~~~~~g~tpL~~A~   73 (539)
                      ||+|+   ..|+.++|+.|++.|.+ ++.+|..|.||||+|+..|+.+    +++.|++.+... +..+  ..+++|+|+
T Consensus        36 Lh~a~~~~~~~~~~~v~~Ll~~ga~-v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~-n~~~--~~~~~~~a~  111 (661)
T PHA02917         36 LHAYLFNEHCNNVEVVKLLLDSGTN-PLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS-NIND--FNIFSYMKS  111 (661)
T ss_pred             HHHHHHhhhcCcHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC-CCCC--cchHHHHHh
Confidence            68764   44889999999999887 5788999999999999988854    456777654321 2211  236677788


Q ss_pred             HcCCHHHHHHHHhCCcccccccCCCCCcHHHHHH--HcCCHHHHHHHHhcCCcccc--ccCCCC-----------ChHHh
Q 040043           74 RRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAI--SRGKIDIVKEILKVRPSFCE--QADKNR-----------CLPLH  138 (539)
Q Consensus        74 ~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~~v~~LL~~~~~~~~--~~d~~g-----------~tpLh  138 (539)
                      .+|+.++|++|+++|++++ ..|..|.||||.++  ..|+.++++.|+++|++...  ..+..|           .||||
T Consensus       112 ~~~~~e~vk~Ll~~Gadin-~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~  190 (661)
T PHA02917        112 KNVDVDLIKVLVEHGFDLS-VKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLH  190 (661)
T ss_pred             hcCCHHHHHHHHHcCCCCC-ccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHH
Confidence            8888888888888888877 56778888888543  46788888888888877631  122233           48888


Q ss_pred             HHHH-----------cCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCH--HHHHHHHHhCCCcc---ccccCCCC
Q 040043          139 YASR-----------IGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHV--KILEAFIASSPTSF---NCLTTDGD  202 (539)
Q Consensus       139 ~A~~-----------~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~--~~v~~Ll~~~~~~~---~~~d~~g~  202 (539)
                      +|+.           .++.+++++|+++|++++.. |.+|.||||+|+.+|+.  ++++.|++ +.+..   ...|..|.
T Consensus       191 ~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~-d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~  268 (661)
T PHA02917        191 LYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSI-DKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCC  268 (661)
T ss_pred             HHHhhcccccccccccCcHHHHHHHHHCCCCcccC-CCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccc
Confidence            8875           45788888888888888876 88888888888888874  68887764 32211   11222333


Q ss_pred             cHHHHHH----------------------------------------------------------------HhCC--hhH
Q 040043          203 TVFHLAL----------------------------------------------------------------RFGK--YNA  216 (539)
Q Consensus       203 t~Lh~Av----------------------------------------------------------------~~~~--~~~  216 (539)
                      +++|+|+                                                                .+|.  .++
T Consensus       269 ~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~  348 (661)
T PHA02917        269 TRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPL  348 (661)
T ss_pred             cchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHH
Confidence            3333333                                                                2333  336


Q ss_pred             HHHHHhhccc---------------------------ccccccccCCCCcHHHHHHHcC---------------------
Q 040043          217 FIFLAESFDF---------------------------TGLLHQQDQFGNTVLHLAILRN---------------------  248 (539)
Q Consensus       217 v~~Ll~~~~~---------------------------~~~~~~~d~~G~T~Lh~A~~~~---------------------  248 (539)
                      +++|++.+..                           ++..+..|.+|+||||.|++.+                     
T Consensus       349 v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~  428 (661)
T PHA02917        349 VECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYA  428 (661)
T ss_pred             HHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhh
Confidence            6666665331                           1234455667999999987533                     


Q ss_pred             --CHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCCCc
Q 040043          249 --NYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSP  301 (539)
Q Consensus       249 --~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~  301 (539)
                        ..++++.|+ ..|+|+|.+|..|+||||+|+..+..+.++.+++.+++.+...
T Consensus       429 ~~~~~~v~~Ll-~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d  482 (661)
T PHA02917        429 CPILSTINICL-PYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRS  482 (661)
T ss_pred             hhhHHHHHHHH-HCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCC
Confidence              245778888 4599999999999999999999999999999999988876543

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.2e-32  Score=285.27  Aligned_cols=257  Identities=18%  Similarity=0.227  Sum_probs=224.7

Q ss_pred             ecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHc-----CCHHHHHHHHhcCcccccccccCCChHHHHHHHcC--
Q 040043            4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQ-----GNAEISALLLKTNLFVATLLNQERQSAFLLACRRG--   76 (539)
Q Consensus         4 Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~-----g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--   76 (539)
                      +...++.++|+.|++.|.+ ++.+|..|.||||.|+..     ++.+++++|++.|+++ +.+|..|.||||.|+.++  
T Consensus        45 ~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~  122 (489)
T PHA02798         45 QRDSPSTDIVKLFINLGAN-VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGETPLYCLLSNGYI  122 (489)
T ss_pred             hCCCCCHHHHHHHHHCCCC-CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCc
Confidence            4456789999999999998 789999999999999864     6799999999999997 678999999999999986  


Q ss_pred             -CHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCC---HHHHHHHHhcCCccccccCCCCChHHhHHHHc----CCHHH
Q 040043           77 -HVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGK---IDIVKEILKVRPSFCEQADKNRCLPLHYASRI----GNVEI  148 (539)
Q Consensus        77 -~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~----g~~~~  148 (539)
                       +.+++++|+++|++++ ..|.+|.||||+|+..|+   .++++.|++.+.++....+..|.||||.++..    ++.++
T Consensus       123 ~~~~iv~~Ll~~Gadvn-~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~i  201 (489)
T PHA02798        123 NNLEILLFMIENGADTT-LLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADI  201 (489)
T ss_pred             ChHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHH
Confidence             7899999999999987 689999999999999998   99999999999887444456899999998764    47999


Q ss_pred             HHHHHcCCCccccccccCCCCHHH-------HHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHH
Q 040043          149 TKLLLNSKPDMALQYNNNGYTPLH-------QAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA  221 (539)
Q Consensus       149 v~~Ll~~~~~~~~~~d~~g~tpLh-------~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll  221 (539)
                      +++|+++|++++.. +..|.++++       .+...++.+++..|+..  .+++.+|..|+||||+|+.+++.+++++|+
T Consensus       202 vk~Li~~Ga~i~~~-~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~--~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL  278 (489)
T PHA02798        202 LKLFVDNGFIINKE-NKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSY--IDINQVDELGFNPLYYSVSHNNRKIFEYLL  278 (489)
T ss_pred             HHHHHHCCCCcccC-CccccchHHHHHHHHHhhcccchHHHHHHHHhc--CCCCCcCcCCccHHHHHHHcCcHHHHHHHH
Confidence            99999999999876 778888876       24456678888877653  568999999999999999999999999999


Q ss_pred             hhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccC
Q 040043          222 ESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYT  270 (539)
Q Consensus       222 ~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~  270 (539)
                      +.   +++++.+|..|+||||+|+..++.++++.|+ +.+++++..+..
T Consensus       279 ~~---GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL-~~~~~~~~i~~~  323 (489)
T PHA02798        279 QL---GGDINIITELGNTCLFTAFENESKFIFNSIL-NKKPNKNTISYT  323 (489)
T ss_pred             Hc---CCcccccCCCCCcHHHHHHHcCcHHHHHHHH-ccCCCHHHHHHH
Confidence            97   6679999999999999999999999999999 447887755443

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-31  Score=280.49  Aligned_cols=295  Identities=15%  Similarity=0.137  Sum_probs=199.5

Q ss_pred             CceecccC---cHHHHHHHHHhCChhhhccccCCCCHHHHHHHcC--CHHHHHHHHhcCccc-ccccccCCChHHHHHHH
Q 040043            1 IKAATGFG---HIELVTEIIKLCPQLVAAVNEKLETPLHEACRQG--NAEISALLLKTNLFV-ATLLNQERQSAFLLACR   74 (539)
Q Consensus         1 Lh~Aa~~g---~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g--~~~iv~~Ll~~~~~~-~~~~~~~g~tpL~~A~~   74 (539)
                      ||+|+..|   +.|+|+.|++.|++ ++.+|..|+||||+|+..|  +.+++++|++.|++. .+..+..+.+|||.++.
T Consensus        45 Lh~A~~~~~~~~~eivklLLs~GAd-in~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~  123 (672)
T PHA02730         45 LHCYVSNKCDTDIKIVRLLLSRGVE-RLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMS  123 (672)
T ss_pred             HHHHHHcCCcCcHHHHHHHHhCCCC-CcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHH
Confidence            79999987   59999999999988 7899999999999999977  799999999986533 12245456666666666


Q ss_pred             --cCCHHHHHHHHh-CCcccccccC----CCCCcHHHHHHHcCCHHHHHHHHhcCCccc------cccCCCCC-hHHhHH
Q 040043           75 --RGHVNVVKLMLN-QSWLMEFEED----RDESTPLHVAISRGKIDIVKEILKVRPSFC------EQADKNRC-LPLHYA  140 (539)
Q Consensus        75 --~g~~eiv~~Ll~-~~~~~~~~~~----~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~------~~~d~~g~-tpLh~A  140 (539)
                        +++.+++++|+. .+.+++...+    ..|.+|++++...++.++++.|++.+++..      ...|..+. |.||++
T Consensus       124 s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~  203 (672)
T PHA02730        124 SDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYY  203 (672)
T ss_pred             hcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHH
Confidence              666777777775 3334331111    255666666666666666666666666551      11222333 333322


Q ss_pred             ------HHcCCHHHHHHHHcCCCccccccccCCCCHHHH--HHHcCCHHHHHHHHH------------------------
Q 040043          141 ------SRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQ--AAINGHVKILEAFIA------------------------  188 (539)
Q Consensus       141 ------~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~--Aa~~g~~~~v~~Ll~------------------------  188 (539)
                            ..+.+.|++++|+++|++++.. |.+|.||||+  |...|+.|+++.|++                        
T Consensus       204 il~~~~~~~n~~eiv~lLIs~GadIN~k-d~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~  282 (672)
T PHA02730        204 ILSHRESESLSKDVIKCLIDNNVSIHGR-DEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYL  282 (672)
T ss_pred             HHhhhhhhccCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhh
Confidence                  2334556666666666666654 6666666663  333444555555555                        


Q ss_pred             --------------------------------------------------------------------------------
Q 040043          189 --------------------------------------------------------------------------------  188 (539)
Q Consensus       189 --------------------------------------------------------------------------------  188 (539)
                                                                                                      
T Consensus       283 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIv  362 (672)
T PHA02730        283 NKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPIL  362 (672)
T ss_pred             hhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHH
Confidence                                                                                            


Q ss_pred             -----hCCCccccccCCCCcHHHHHHHhCC----hhHHHHHHhhcccccccccccCCCCcHHHH---HHHcC--------
Q 040043          189 -----SSPTSFNCLTTDGDTVFHLALRFGK----YNAFIFLAESFDFTGLLHQQDQFGNTVLHL---AILRN--------  248 (539)
Q Consensus       189 -----~~~~~~~~~d~~g~t~Lh~Av~~~~----~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~---A~~~~--------  248 (539)
                           ++.+ ++. +..|.||||+|+..++    .+++++|++++.. ..+|.+|.+|.||||.   |...+        
T Consensus       363 elLIs~GAd-IN~-k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~-~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~  439 (672)
T PHA02730        363 RCMLDNGAT-MDK-TTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGH-MAINHVSNNGRLCMYGLILSRFNNCGYHCYET  439 (672)
T ss_pred             HHHHHCCCC-CCc-CCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCC-ccccccccCCCchHhHHHHHHhccccccccch
Confidence                 3322 232 2578899998888774    7999999887321 2478888899999983   33222        


Q ss_pred             -CHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCCCc
Q 040043          249 -NYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSP  301 (539)
Q Consensus       249 -~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~  301 (539)
                       ..+++++|+ ..|+|+|.+|..|+|||++|+..++.+.++.++..+++++...
T Consensus       440 ~~~~ivk~LI-s~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d  492 (672)
T PHA02730        440 ILIDVFDILS-KYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTS  492 (672)
T ss_pred             hHHHHHHHHH-hcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCC
Confidence             235688888 4599999999999999999999988889999998888776544

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=5.7e-33  Score=301.18  Aligned_cols=287  Identities=26%  Similarity=0.364  Sum_probs=246.3

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||.|+..|+.+++.++...++. -...++.|.||+|.|+..|..+++++++..+.+. +..+..|.||||.|+..++.++
T Consensus       345 lHlaa~~~~~~~~~~l~~~~~~-~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~-~~~gk~gvTplh~aa~~~~~~~  422 (1143)
T KOG4177|consen  345 LHLAAKEGQVEVAGALLEHGAQ-RRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADP-NSAGKNGVTPLHVAAHYGNPRV  422 (1143)
T ss_pred             ccHhhhhhhHHHHHHhhccccc-cCcccccCCcchhhhcccCchhHHHhhhhccCCc-ccCCCCCcceeeehhhccCcce
Confidence            5777777777766666555555 4566778888888888888888888888888874 7788888888888888888888


Q ss_pred             HHHHHhCCcccccccCCCCCcHHHHHHHcC-CHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcc
Q 040043           81 VKLMLNQSWLMEFEEDRDESTPLHVAISRG-KIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDM  159 (539)
Q Consensus        81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  159 (539)
                      ++.+++++++.+ ..+..|.||+|.|+..| ..+....+++.+.+. +..-..|.||||.|+..|+.++++.|++.++..
T Consensus       423 v~l~l~~gA~~~-~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~  500 (1143)
T KOG4177|consen  423 VKLLLKRGASPN-AKAKLGYTPLHVAAKKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND  500 (1143)
T ss_pred             EEEEeccCCChh-hHhhcCCChhhhhhhcccHhhhhhhHhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCcc
Confidence            888888888777 67888899999999998 667777777766666 777888999999999999999999999888666


Q ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCc
Q 040043          160 ALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNT  239 (539)
Q Consensus       160 ~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T  239 (539)
                      +.. .+.|.+++|.|...+.+.+++.+++++.. ++.++..|.||||.|+.+|+.++|++|+++   +.+++.+|+.|+|
T Consensus       501 ~~~-~~~~l~~lhla~~~~~v~~~~~l~~~ga~-v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~---gAdv~ak~~~G~T  575 (1143)
T KOG4177|consen  501 NLD-AKKGLTPLHLAADEDTVKVAKILLEHGAN-VDLRTGRGYTPLHVAVHYGNVDLVKFLLEH---GADVNAKDKLGYT  575 (1143)
T ss_pred             Ccc-chhccchhhhhhhhhhHHHHHHHhhcCCc-eehhcccccchHHHHHhcCCchHHHHhhhC---CccccccCCCCCC
Confidence            665 77889999999999999999988887744 788899999999999999999999999998   7789999999999


Q ss_pred             HHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCC
Q 040043          240 VLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEP  297 (539)
Q Consensus       240 ~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~  297 (539)
                      |||.|+..|+.+++.+|+ +.|+++|..|.+|.|||++|...|..+.+..++.....+
T Consensus       576 PLH~Aa~~G~~~i~~LLl-k~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  576 PLHQAAQQGHNDIAELLL-KHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             hhhHHHHcChHHHHHHHH-HcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCcc
Confidence            999999999999999999 559999999999999999999999999999888877764

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-31  Score=287.18  Aligned_cols=290  Identities=17%  Similarity=0.140  Sum_probs=223.1

Q ss_pred             ceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHH--HcCCHHHHHHHHhcCcccccc--cccCC-----------C
Q 040043            2 KAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEAC--RQGNAEISALLLKTNLFVATL--LNQER-----------Q   66 (539)
Q Consensus         2 h~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa--~~g~~~iv~~Ll~~~~~~~~~--~~~~g-----------~   66 (539)
                      |.|+..|+.|+|++|++.|.+ ++.+|..|.||||.|+  ..|+.+++++|++.|+++...  .+..|           .
T Consensus       108 ~~a~~~~~~e~vk~Ll~~Gad-in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~  186 (661)
T PHA02917        108 YMKSKNVDVDLIKVLVEHGFD-LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCG  186 (661)
T ss_pred             HHHhhcCCHHHHHHHHHcCCC-CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccc
Confidence            578899999999999999988 7899999999999654  478999999999999987421  12223           5


Q ss_pred             hHHHHHHH-----------cCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCH--HHHHHHHhcCCccc---cccC
Q 040043           67 SAFLLACR-----------RGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKI--DIVKEILKVRPSFC---EQAD  130 (539)
Q Consensus        67 tpL~~A~~-----------~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~--~~v~~LL~~~~~~~---~~~d  130 (539)
                      ||||+|+.           .++.+++++|+++|++++ ..|.+|.||||+|+.+|+.  ++++.|++ +.+..   ...|
T Consensus       187 t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn-~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~  264 (661)
T PHA02917        187 TVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPS-SIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDD  264 (661)
T ss_pred             cHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcc-cCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccC
Confidence            99999986           468999999999999988 6789999999999999985  79999975 65442   2456


Q ss_pred             CCCChHHhHHHHc---------CCHHHHHHHHcCCCcccc-------c-----------cccCCCCHHHHHH---HcCC-
Q 040043          131 KNRCLPLHYASRI---------GNVEITKLLLNSKPDMAL-------Q-----------YNNNGYTPLHQAA---INGH-  179 (539)
Q Consensus       131 ~~g~tpLh~A~~~---------g~~~~v~~Ll~~~~~~~~-------~-----------~d~~g~tpLh~Aa---~~g~-  179 (539)
                      ..|.+|+|+|+..         .+.+++++|++.|++...       .           ....+.+++|.+.   ..|. 
T Consensus       265 ~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~  344 (661)
T PHA02917        265 LTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDI  344 (661)
T ss_pred             cccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCC
Confidence            6788888888842         167888888888875321       0           0112333433333   3444 


Q ss_pred             -HHHHHHHHHhCC-----------------------------CccccccCCCCcHHHHHHHhCC----------------
Q 040043          180 -VKILEAFIASSP-----------------------------TSFNCLTTDGDTVFHLALRFGK----------------  213 (539)
Q Consensus       180 -~~~v~~Ll~~~~-----------------------------~~~~~~d~~g~t~Lh~Av~~~~----------------  213 (539)
                       .++++.|++.++                             .++...+.+|+||||.|++.++                
T Consensus       345 ~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~  424 (661)
T PHA02917        345 DIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCD  424 (661)
T ss_pred             cHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccch
Confidence             346666665443                             2233345579999999985433                


Q ss_pred             -------hhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHH-cCCch
Q 040043          214 -------YNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKE-SGTKE  285 (539)
Q Consensus       214 -------~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~-~~~~~  285 (539)
                             .+++++|+..   ++++|.+|..|+||||+|+..++.+++++|++ .|+++|.+|..|.|||++|.. .+..+
T Consensus       425 ~~~~~~~~~~v~~Ll~~---GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~-~GAdin~~d~~G~T~L~~A~~~~~~~~  500 (661)
T PHA02917        425 MSYACPILSTINICLPY---LKDINMIDKRGETLLHKAVRYNKQSLVSLLLE-SGSDVNIRSNNGYTCIAIAINESRNIE  500 (661)
T ss_pred             hhhhhhhHHHHHHHHHC---CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHhCCCHH
Confidence                   4566778776   66799999999999999999999999999994 599999999999999999996 67888


Q ss_pred             hhHHHhhhccCCC
Q 040043          286 AFSSELQSVEEPN  298 (539)
Q Consensus       286 ~~~~~l~~~~~~~  298 (539)
                      .++.++..+...+
T Consensus       501 iv~~LL~~ga~i~  513 (661)
T PHA02917        501 LLKMLLCHKPTLD  513 (661)
T ss_pred             HHHHHHHcCCChh
Confidence            9999998776554

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=6.4e-31  Score=253.47  Aligned_cols=214  Identities=26%  Similarity=0.330  Sum_probs=184.3

Q ss_pred             eecccCcHHHHHHHHHhCC--hh--hhccccCCCCHHHHHHHcCCHHHHHHHHhcC-ccc--c-----cccccCCChHHH
Q 040043            3 AATGFGHIELVTEIIKLCP--QL--VAAVNEKLETPLHEACRQGNAEISALLLKTN-LFV--A-----TLLNQERQSAFL   70 (539)
Q Consensus         3 ~Aa~~g~~e~v~~Ll~~~~--~~--l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~-~~~--~-----~~~~~~g~tpL~   70 (539)
                      -|++.|.+.....|+....  ++  +--...+|.|||-+||++||.++|++|+++. ++.  .     .-.+.+|-+||.
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW   89 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW   89 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence            3678888888887776543  11  2234567889999999999999999999843 222  1     112457889999


Q ss_pred             HHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHH
Q 040043           71 LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITK  150 (539)
Q Consensus        71 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~  150 (539)
                      .|+..||.++|+.|+++++.++ .......|||-.||..|+.+++++|++++.++ +..|+.|.|.||+||..|+.++++
T Consensus        90 aAsaAGHl~vVk~L~~~ga~VN-~tT~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~q  167 (615)
T KOG0508|consen   90 AASAAGHLEVVKLLLRRGASVN-DTTRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQ  167 (615)
T ss_pred             HHhccCcHHHHHHHHHhcCccc-cccccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHH
Confidence            9999999999999999998887 45666779999999999999999999999998 889999999999999999999999


Q ss_pred             HHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHH
Q 040043          151 LLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA  221 (539)
Q Consensus       151 ~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll  221 (539)
                      +|++.|+|++.. +..|+|+||.+++.|++++++.|++.+..  -.+|..|-|||..|...|+.+++++|+
T Consensus       168 yLle~gADvn~k-s~kGNTALH~caEsG~vdivq~Ll~~ga~--i~~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  168 YLLEQGADVNAK-SYKGNTALHDCAESGSVDIVQLLLKHGAK--IDVDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             HHHHhCCCcchh-cccCchHHHhhhhcccHHHHHHHHhCCce--eeecCCCCchHHHHhhhcchHHHHHHh
Confidence            999999999987 99999999999999999999999988754  356777999999999999999999888

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.97  E-value=8.1e-32  Score=292.28  Aligned_cols=296  Identities=27%  Similarity=0.389  Sum_probs=224.9

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||.|+..|+.++|+.++..+.. .+..+..|.||||.||+.+..+++++|++.|.++ ...+....||+|+|...|+.++
T Consensus       246 lh~a~~~g~~~i~~~l~~~ga~-~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~-~~~~~~~kt~l~~a~~~g~~~i  323 (1143)
T KOG4177|consen  246 LHVAAFMGHLDIVKLLLQHGAS-VNVSTVRGETPLHMAARAGQVEVCKLLLQNGADV-LAKARDDQTPLHIASRLGHEEI  323 (1143)
T ss_pred             HHHHHhccchhHHHHHHhcccc-cCcccccccCcchhhhccchhhhHhhhhccCccc-ccccccccChhhhhcccchHHH
Confidence            6888899999999999888877 7788888999999999999999999988888766 4455556666666666666666


Q ss_pred             HHHHHhCCccccc--------------------------------ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccc
Q 040043           81 VKLMLNQSWLMEF--------------------------------EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ  128 (539)
Q Consensus        81 v~~Ll~~~~~~~~--------------------------------~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~  128 (539)
                      ++.+++.+..++.                                ..+..|.+|+|.|+..|..+.++.++..+.+. +.
T Consensus       324 ~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~-~~  402 (1143)
T KOG4177|consen  324 VHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADP-NS  402 (1143)
T ss_pred             HHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccCCc-cc
Confidence            6666655544431                                23344555666666666666666666665553 55


Q ss_pred             cCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcC-CHHHHHHHHHhCCCccccccCCCCcHHHH
Q 040043          129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAING-HVKILEAFIASSPTSFNCLTTDGDTVFHL  207 (539)
Q Consensus       129 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g-~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  207 (539)
                      .+..|.||||.|+..++..+++.+++.+++.+.. +..|+||+|.|+..| ..+....+++ .+.+++.....|.||||+
T Consensus       403 ~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~-~~lG~T~lhvaa~~g~~~~~~~~l~~-~g~~~n~~s~~G~T~Lhl  480 (1143)
T KOG4177|consen  403 AGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAK-AKLGYTPLHVAAKKGRYLQIARLLLQ-YGADPNAVSKQGFTPLHL  480 (1143)
T ss_pred             CCCCCcceeeehhhccCcceEEEEeccCCChhhH-hhcCCChhhhhhhcccHhhhhhhHhh-cCCCcchhccccCcchhh
Confidence            6666666666666666666666666666666665 777888888888888 5666655554 446688888999999999


Q ss_pred             HHHhCChhHHHHHHhhcc------------------------------cccccccccCCCCcHHHHHHHcCCHHHHHHHh
Q 040043          208 ALRFGKYNAFIFLAESFD------------------------------FTGLLHQQDQFGNTVLHLAILRNNYQLAEYII  257 (539)
Q Consensus       208 Av~~~~~~~v~~Ll~~~~------------------------------~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll  257 (539)
                      |...|+.+++..+++...                              .+..++.++..|+||||.|+..|+..+|++|+
T Consensus       481 aaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLL  560 (1143)
T KOG4177|consen  481 AAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLL  560 (1143)
T ss_pred             hhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhh
Confidence            999999999888887431                              13346678889999999999999999999999


Q ss_pred             hccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCCCch
Q 040043          258 KKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSPK  302 (539)
Q Consensus       258 ~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~  302 (539)
                      ++ |+|++.+++.|+||||.|+..|+.+++..+++.++.++....
T Consensus       561 e~-gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~  604 (1143)
T KOG4177|consen  561 EH-GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADL  604 (1143)
T ss_pred             hC-CccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccc
Confidence            65 999999999999999999999999999999999998875443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=1e-30  Score=263.00  Aligned_cols=209  Identities=24%  Similarity=0.336  Sum_probs=189.6

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhC-CcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcC
Q 040043           66 QSAFLLACRRGHVNVVKLMLNQ-SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG  144 (539)
Q Consensus        66 ~tpL~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g  144 (539)
                      ..-++.|++.|..+.|+.|++. +..++ ..|.+|.|+||.|+.+++.+++++|+++++++......-+.||||+|+++|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~-~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVN-NPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCC-CCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            3567889999999999999998 66665 678899999999999999999999999999984444478999999999999


Q ss_pred             CHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhc
Q 040043          145 NVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESF  224 (539)
Q Consensus       145 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~  224 (539)
                      ++.++.+|+++|+++... |.+|.+|||+|++.|+.-++.+++.+. .+++.+|.+|+||||+|+.+|....+..|++- 
T Consensus       124 ~~~vv~lLlqhGAdpt~~-D~~G~~~lHla~~~~~~~~vayll~~~-~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f-  200 (600)
T KOG0509|consen  124 HISVVDLLLQHGADPTLK-DKQGLTPLHLAAQFGHTALVAYLLSKG-ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKF-  200 (600)
T ss_pred             cHHHHHHHHHcCCCCcee-cCCCCcHHHHHHHhCchHHHHHHHHhc-ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHh-
Confidence            999999999999999997 999999999999999999999999988 67899999999999999999998878888776 


Q ss_pred             cccccccccc-CCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHc
Q 040043          225 DFTGLLHQQD-QFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKES  281 (539)
Q Consensus       225 ~~~~~~~~~d-~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~  281 (539)
                        +..++..| ..|+||||+|+..|+..+++ |+.+.|.+.+.+|.+|+||+++|.+.
T Consensus       201 --~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  201 --GASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             --cccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence              44566666 99999999999999999999 77688999999999999999999876

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.8e-29  Score=264.58  Aligned_cols=282  Identities=16%  Similarity=0.165  Sum_probs=217.9

Q ss_pred             cCcHHHHHHHHHhCChhhhccc-----cCCCCHHHHHHHcCCHHHHHHHHhcCcccc------cccccCC-ChHHHHH--
Q 040043            7 FGHIELVTEIIKLCPQLVAAVN-----EKLETPLHEACRQGNAEISALLLKTNLFVA------TLLNQER-QSAFLLA--   72 (539)
Q Consensus         7 ~g~~e~v~~Ll~~~~~~l~~~n-----~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~------~~~~~~g-~tpL~~A--   72 (539)
                      .++.|+|++|+..+...++..+     ..|.+|++.|...++.++|++|++.|+++.      ...+..+ .|.||++  
T Consensus       126 n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il  205 (672)
T PHA02730        126 NIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYIL  205 (672)
T ss_pred             CCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHH
Confidence            5555566666542211122221     378899999999999999999999998873      1123333 3445533  


Q ss_pred             ----HHcCCHHHHHHHHhCCcccccccCCCCCcHHHH--HHHcCCHHHHHHHHh--------------------------
Q 040043           73 ----CRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHV--AISRGKIDIVKEILK--------------------------  120 (539)
Q Consensus        73 ----~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~--A~~~g~~~~v~~LL~--------------------------  120 (539)
                          ..+++.|++++|+++|++++ ..|.+|.||||+  +...|+.|+++.|++                          
T Consensus       206 ~~~~~~~n~~eiv~lLIs~GadIN-~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (672)
T PHA02730        206 SHRESESLSKDVIKCLIDNNVSIH-GRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNK  284 (672)
T ss_pred             hhhhhhccCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhh
Confidence                35578999999999999887 689999999995  555577999999998                          


Q ss_pred             ------cCCccccc--------------------cCCCCCh---------------------HHhHHHHcC---CHHHHH
Q 040043          121 ------VRPSFCEQ--------------------ADKNRCL---------------------PLHYASRIG---NVEITK  150 (539)
Q Consensus       121 ------~~~~~~~~--------------------~d~~g~t---------------------pLh~A~~~g---~~~~v~  150 (539)
                            .+.+. ..                    .|..|.+                     .||.-.+.+   +.++++
T Consensus       285 ~~~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIve  363 (672)
T PHA02730        285 RFRVTPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILR  363 (672)
T ss_pred             hhhcccCCcch-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHH
Confidence                  34443 22                    4556654                     677777655   589999


Q ss_pred             HHHcCCCccccccccCCCCHHHHHHHcCC----HHHHHHHHHhCCC-ccccccCCCCcHHHH---HHHhC---------C
Q 040043          151 LLLNSKPDMALQYNNNGYTPLHQAAINGH----VKILEAFIASSPT-SFNCLTTDGDTVFHL---ALRFG---------K  213 (539)
Q Consensus       151 ~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~-~~~~~d~~g~t~Lh~---Av~~~---------~  213 (539)
                      +|+++|++++.  +..|.||||.|+..++    .++++.|++++.. +++..|.+|+||||.   |...+         .
T Consensus       364 lLIs~GAdIN~--k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~  441 (672)
T PHA02730        364 CMLDNGATMDK--TTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETIL  441 (672)
T ss_pred             HHHHCCCCCCc--CCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhH
Confidence            99999999996  4789999999998875    8999999999864 688899999999994   33232         2


Q ss_pred             hhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCcccccc-CCCCHHHHHHHc--CCchhhHHH
Q 040043          214 YNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNY-TNQTALDVLKES--GTKEAFSSE  290 (539)
Q Consensus       214 ~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~-~g~t~l~~a~~~--~~~~~~~~~  290 (539)
                      .+++++|+..   ++++|.+|..|+||||+|+..++.+++++|++ .|+++|.+|+ .|.||++.|...  ++.++++.+
T Consensus       442 ~~ivk~LIs~---GADINakD~~G~TPLh~Aa~~~~~eive~LI~-~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~L  517 (672)
T PHA02730        442 IDVFDILSKY---MDDIDMIDNENKTLLYYAVDVNNIQFARRLLE-YGASVNTTSRSIINTAIQKSSYRRENKTKLVDLL  517 (672)
T ss_pred             HHHHHHHHhc---ccchhccCCCCCCHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHH
Confidence            2468999887   66799999999999999999999999999994 5999999997 599999999874  678888888


Q ss_pred             hhhccC
Q 040043          291 LQSVEE  296 (539)
Q Consensus       291 l~~~~~  296 (539)
                      ++.++.
T Consensus       518 Ls~ga~  523 (672)
T PHA02730        518 LSYHPT  523 (672)
T ss_pred             HHcCCC
Confidence            887654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=2.9e-30  Score=259.70  Aligned_cols=207  Identities=26%  Similarity=0.349  Sum_probs=190.3

Q ss_pred             ceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHH
Q 040043            2 KAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVV   81 (539)
Q Consensus         2 h~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv   81 (539)
                      +.|+.+|+++.|+.+++.....++..|.+|-|+||.||.+++++++++|+++|++++..-..-+.||||+|+++|+..+|
T Consensus        49 v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv  128 (600)
T KOG0509|consen   49 VKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVV  128 (600)
T ss_pred             hhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHH
Confidence            56899999999999999844448899999999999999999999999999999999665557889999999999999999


Q ss_pred             HHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcccc
Q 040043           82 KLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMAL  161 (539)
Q Consensus        82 ~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~  161 (539)
                      .+|+++|+++. ..|.+|.+|+|.|+..|+.-++-++|.++.+. +.+|.+|+||||+|+.+|+...++.|++.++++..
T Consensus       129 ~lLlqhGAdpt-~~D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~  206 (600)
T KOG0509|consen  129 DLLLQHGADPT-LKDKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLL  206 (600)
T ss_pred             HHHHHcCCCCc-eecCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccc
Confidence            99999999998 68999999999999999999999999999665 89999999999999999998889999999999998


Q ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHh
Q 040043          162 QYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRF  211 (539)
Q Consensus       162 ~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~  211 (539)
                      ..|..|.||||+|+..|+..++. |+..+....+..|.+|+||+.+|.+.
T Consensus       207 ~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  207 TDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            86799999999999999999999 77777788899999999999999877

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.1e-28  Score=253.89  Aligned_cols=268  Identities=13%  Similarity=0.121  Sum_probs=214.8

Q ss_pred             eecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHH-cCCHHHHHHHHhcCcccc-----------------------
Q 040043            3 AATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACR-QGNAEISALLLKTNLFVA-----------------------   58 (539)
Q Consensus         3 ~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~-~g~~~iv~~Ll~~~~~~~-----------------------   58 (539)
                      +|...|++|+|++|++.|.+ ++.+++.|.||||+|+. .|+.|++++|++.|++..                       
T Consensus        78 ~~s~n~~lElvk~LI~~GAd-vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~  156 (631)
T PHA02792         78 LCSDNIDIELLKLLISKGLE-INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWD  156 (631)
T ss_pred             HHHhcccHHHHHHHHHcCCC-cccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchh
Confidence            46778999999999999988 78888889999999976 699999999999997521                       


Q ss_pred             ------------cccccCCChHHHHHHHcC-------CHHHHHHHHhCCcccccccCCCCCcHHHHHHHcC--CHHHHHH
Q 040043           59 ------------TLLNQERQSAFLLACRRG-------HVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRG--KIDIVKE  117 (539)
Q Consensus        59 ------------~~~~~~g~tpL~~A~~~g-------~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~  117 (539)
                                  +..+..|.||||+|+.++       +.|+++.|+++|+++. ..|..|.||||+|+.+.  +.|+++.
T Consensus       157 ~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~-~~d~~g~t~l~~~~~~~~i~~ei~~~  235 (631)
T PHA02792        157 DELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR-YYTYREHTTLYYYVDKCDIKREIFDA  235 (631)
T ss_pred             hhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC-ccCCCCChHHHHHHHcccchHHHHHH
Confidence                        234567999999999999       8999999999999887 57788999999999999  7889998


Q ss_pred             HHhcCCccccc------------------cCC-------CCCh------------------------------HHhHHHH
Q 040043          118 ILKVRPSFCEQ------------------ADK-------NRCL------------------------------PLHYASR  142 (539)
Q Consensus       118 LL~~~~~~~~~------------------~d~-------~g~t------------------------------pLh~A~~  142 (539)
                      |++..-+....                  .|.       .|.+                              .||.-..
T Consensus       236 L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~  315 (631)
T PHA02792        236 LFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVS  315 (631)
T ss_pred             HHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHh
Confidence            88642211000                  000       0111                              2333333


Q ss_pred             cC--CHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCC--CcHHHHHHHhCChhH--
Q 040043          143 IG--NVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDG--DTVFHLALRFGKYNA--  216 (539)
Q Consensus       143 ~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g--~t~Lh~Av~~~~~~~--  216 (539)
                      .+  +.+++++|+++|++..   ......+++.|+..|+.++++.|++++++ ++..|.+|  .||||+|......++  
T Consensus       316 ~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~g~~~TpLh~A~~n~~~~v~~  391 (631)
T PHA02792        316 YHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNV-VVEDDDNIINIMPLFPTLSIHESDVLS  391 (631)
T ss_pred             cCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCc-hhhhcCCCCChhHHHHHHHhccHhHHH
Confidence            33  4689999999999864   22356789999999999999999998755 67777764  699999887766543  


Q ss_pred             -HHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHH
Q 040043          217 -FIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKE  280 (539)
Q Consensus       217 -v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~  280 (539)
                       ++++++.   ++++|.+|..|.||||+|+..++.+++++|+++ |+++|.+|..|+||+++|..
T Consensus       392 IlklLIs~---GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~-GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        392 ILKLCKPY---IDDINKIDKHGRSILYYCIESHSVSLVEWLIDN-GADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHHHhc---CCccccccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHH
Confidence             5666655   667999999999999999999999999999965 99999999999999999976

>PF13962 PGG: Domain of unknown function

Probab=99.95  E-value=1.4e-27  Score=198.91  Aligned_cols=112  Identities=38%  Similarity=0.632  Sum_probs=98.8

Q ss_pred             HHHHHhhhhhHHHHHHHHhhhhhcccccCCCccccCCCCCCccccCCCc-chhhHHHHHHHHHHHHHHHHHHHHhcchhh
Q 040043          334 REALQNARNTIILVAVLIATVTYAGGISPPGGVYQEGPLKGKSTVGRTT-AFKVFEISNNIALFLSLSIVIILVSIIPFE  412 (539)
Q Consensus       334 ~~~l~~~~~s~~vvA~LIATvtFaa~~t~PGG~~~~~~~~g~~~~~~~~-~f~~F~~~n~~a~~~s~~~~~~~~~~~~~~  412 (539)
                      +||+++++|+++|||+|||||||||++|||||+||+++..|+|++.+++ .|++|+++|++||++|+++++++++.+...
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~~~~   80 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGLDDF   80 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            4788999999999999999999999999999999986678999998777 999999999999999999999988544223


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhee
Q 040043          413 RKKLMRLLVITHKLMWVSISFMATAYIAASRIT  445 (539)
Q Consensus       413 ~~~~~~~l~~~~~~l~~~~~~m~~af~~~~~~~  445 (539)
                      .+..++.+.++..+||+++.+|++||++|+++|
T Consensus        81 ~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   81 RRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            445556777888899999999999999999875

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=9e-26  Score=210.72  Aligned_cols=177  Identities=20%  Similarity=0.284  Sum_probs=141.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcC--CHHHHHHHHcCCCccccccccCCCCHHHHH
Q 040043           97 RDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG--NVEITKLLLNSKPDMALQYNNNGYTPLHQA  174 (539)
Q Consensus        97 ~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  174 (539)
                      ..+.||||.|+..|+.+.++.|++.    .+..|..|.||||+|+..+  +.+++++|+++|++++...+..|.||||+|
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            4567888888888888888888764    2456778888888888754  788888888888888776335788888887


Q ss_pred             HHc---CCHHHHHHHHHhCCCccccccCCCCcHHHHHHHh--CChhHHHHHHhhcccccccccccCCCCcHHHH-HHHcC
Q 040043          175 AIN---GHVKILEAFIASSPTSFNCLTTDGDTVFHLALRF--GKYNAFIFLAESFDFTGLLHQQDQFGNTVLHL-AILRN  248 (539)
Q Consensus       175 a~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~--~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~-A~~~~  248 (539)
                      +..   ++.++++.|++++ .+++.+|..|+||||.|+..  ++.+++++|++.   +..++.+|.+|+||||. |+..+
T Consensus        95 ~~~~~~~~~eiv~~Ll~~g-adin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~---gadin~~d~~g~t~Lh~~a~~~~  170 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSG-SSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS---GVSFLNKDFDNNNILYSYILFHS  170 (209)
T ss_pred             HHhCccccHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc---CCCcccccCCCCcHHHHHHHhcC
Confidence            753   4688888888765 44788888888999888763  578899999876   56688899999999995 55677


Q ss_pred             CHHHHHHHhhccccCccccccCCCCHHHHHHHcC
Q 040043          249 NYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESG  282 (539)
Q Consensus       249 ~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~  282 (539)
                      +.+++++|++ .|++++.+|..|+||+++|...+
T Consensus       171 ~~~iv~~Ll~-~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        171 DKKIFDFLTS-LGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhhh
Confidence            8999999995 59999999999999999997654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.5e-25  Score=207.72  Aligned_cols=178  Identities=15%  Similarity=0.164  Sum_probs=121.3

Q ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcC--CHHHHHHHHhCCcccccccCCCCCcHHH
Q 040043           27 VNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRG--HVNVVKLMLNQSWLMEFEEDRDESTPLH  104 (539)
Q Consensus        27 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh  104 (539)
                      ..+.+.||||.|+..|+.++|+.|++..    +..|..|.||||+|+..+  +.+++++|+++|++++...+..|.||||
T Consensus        17 ~~~~~~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh   92 (209)
T PHA02859         17 LFYRYCNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALH   92 (209)
T ss_pred             HhhccCcHHHHHHHhCcHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHH
Confidence            3556788888888888888888887642    345777888888887754  7788888888877776332346777777


Q ss_pred             HHHHc---CCHHHHHHHHhcCCccccccCCCCChHHhHHHH--cCCHHHHHHHHcCCCccccccccCCCCHHHH-HHHcC
Q 040043          105 VAISR---GKIDIVKEILKVRPSFCEQADKNRCLPLHYASR--IGNVEITKLLLNSKPDMALQYNNNGYTPLHQ-AAING  178 (539)
Q Consensus       105 ~A~~~---g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~-Aa~~g  178 (539)
                      .|+..   ++.++++.|++.++++ +..|..|.||||+|+.  .++.+++++|++.|++++.. |.+|.||||. |+..+
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~-d~~g~t~Lh~~a~~~~  170 (209)
T PHA02859         93 HYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNK-DFDNNNILYSYILFHS  170 (209)
T ss_pred             HHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc-cCCCCcHHHHHHHhcC
Confidence            76643   3567777777777666 6667777777777665  34677777777777776664 6777777774 44566


Q ss_pred             CHHHHHHHHHhCCCccccccCCCCcHHHHHHHh
Q 040043          179 HVKILEAFIASSPTSFNCLTTDGDTVFHLALRF  211 (539)
Q Consensus       179 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~  211 (539)
                      +.++++.|++.+. +++.+|..|+||||+|..+
T Consensus       171 ~~~iv~~Ll~~Ga-di~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        171 DKKIFDFLTSLGI-DINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             CHHHHHHHHHcCC-CCCCCCCCCCCHHHHHhhh
Confidence            6777776666553 3556666666666666543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=1.9e-26  Score=201.85  Aligned_cols=241  Identities=23%  Similarity=0.261  Sum_probs=214.1

Q ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHH
Q 040043           25 AAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLH  104 (539)
Q Consensus        25 ~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh  104 (539)
                      ..++..|+.-+-.|.+.|+.+++..+..-.++-..-.+.+|.++++.|+-.|+.+.++.++.++...+ +.+.-+.+|+.
T Consensus        56 ~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgn-evs~~p~s~~s  134 (296)
T KOG0502|consen   56 ALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGN-EVSLMPWSPLS  134 (296)
T ss_pred             HHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCC-ccccccCChhh
Confidence            34678899999999999999999998888777666778889999999999999999999999988776 67788999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHH
Q 040043          105 VAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE  184 (539)
Q Consensus       105 ~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~  184 (539)
                      +++.+.+.+.+..+.+   ...+..|+.|.|||.||+..|++++|++|++.|+++... .+...++|.+|++.|..++++
T Consensus       135 lsVhql~L~~~~~~~~---n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~l-gk~resALsLAt~ggytdiV~  210 (296)
T KOG0502|consen  135 LSVHQLHLDVVDLLVN---NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDAL-GKYRESALSLATRGGYTDIVE  210 (296)
T ss_pred             HHHHHHHHHHHHHHhh---ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhh-hhhhhhhHhHHhcCChHHHHH
Confidence            9999998888776655   445789999999999999999999999999999999876 788889999999999999999


Q ss_pred             HHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCc
Q 040043          185 AFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDK  264 (539)
Q Consensus       185 ~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~  264 (539)
                      .||.+.++ ++..|-+|-|||-+|++.++.++++.|++.   +++++..|..|++++.+|+..|+. +|+..+++ .++.
T Consensus       211 lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~s---GAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~-h~lk  284 (296)
T KOG0502|consen  211 LLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLNS---GADVTQEDDSGYWIMDLAVALGYR-IVQQVIEK-HALK  284 (296)
T ss_pred             HHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHhc---CCCcccccccCCcHHHHHHHhhhH-HHHHHHHH-HHHH
Confidence            99988765 899999999999999999999999999887   677999999999999999999987 78888855 7778


Q ss_pred             cccccCCCCHHH
Q 040043          265 NCRNYTNQTALD  276 (539)
Q Consensus       265 ~~~n~~g~t~l~  276 (539)
                      +++|+.-+||+|
T Consensus       285 l~Q~~~~~~~~~  296 (296)
T KOG0502|consen  285 LCQDSEKRTPLH  296 (296)
T ss_pred             HhhcccCCCCCC
Confidence            888888777764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=1.3e-23  Score=233.31  Aligned_cols=241  Identities=20%  Similarity=0.144  Sum_probs=182.2

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhc--CcccccccccCCChHHH-HHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHH
Q 040043           30 KLETPLHEACRQGNAEISALLLKT--NLFVATLLNQERQSAFL-LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVA  106 (539)
Q Consensus        30 ~g~TpLh~Aa~~g~~~iv~~Ll~~--~~~~~~~~~~~g~tpL~-~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A  106 (539)
                      .++++|+.||+.|+.+.++.+++.  +.++ +..|..|+|||| .|+.+++.++++.|++++.     .+..|.||||.|
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~i-n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNI-NCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCC-CCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            567899999999999999999988  5555 567889999999 8888999999999999886     467899999999


Q ss_pred             HHcC---CHHHHHHHHhcCCc-----cc----cccCCCCChHHhHHHHcCCHHHHHHHHcCCCcccccc-----------
Q 040043          107 ISRG---KIDIVKEILKVRPS-----FC----EQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQY-----------  163 (539)
Q Consensus       107 ~~~g---~~~~v~~LL~~~~~-----~~----~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-----------  163 (539)
                      +..+   ..+++..+....+.     ..    ...+..|.||||+|+.+|+.+++++|+++|++++...           
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~  169 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGV  169 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCC
Confidence            8732   22333333333322     11    1123569999999999999999999999999887531           


Q ss_pred             --ccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhC---------ChhHHHHHHhhccccccc--
Q 040043          164 --NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG---------KYNAFIFLAESFDFTGLL--  230 (539)
Q Consensus       164 --d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~---------~~~~v~~Ll~~~~~~~~~--  230 (539)
                        ...|.+|||.|+..|+.++++.|++.+ .+++..|..|+||||+|+..+         ...+.+++++.++.....  
T Consensus       170 ~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g-adin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~e  248 (743)
T TIGR00870       170 DSFYHGESPLNAAACLGSPSIVALLSEDP-ADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKE  248 (743)
T ss_pred             CcccccccHHHHHHHhCCHHHHHHHhcCC-cchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHh
Confidence              135889999999999999999998765 468889999999999999886         234556666655443333  


Q ss_pred             --ccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHH
Q 040043          231 --HQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVL  278 (539)
Q Consensus       231 --~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a  278 (539)
                        +.+|.+|.||||+|+..|+.+++++|++. +.+..........|.+++
T Consensus       249 l~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~-~~~~kk~~a~~~~~~~~~  297 (743)
T TIGR00870       249 LEVILNHQGLTPLKLAAKEGRIVLFRLKLAI-KYKQKKFVAWPNGQQLLS  297 (743)
T ss_pred             hhhhcCCCCCCchhhhhhcCCccHHHHHHHH-HHhcceeeccCcchHhHh
Confidence              67889999999999999999999999953 333333333444444443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=2.1e-24  Score=224.26  Aligned_cols=269  Identities=14%  Similarity=0.076  Sum_probs=203.2

Q ss_pred             hccccCCCCHHHH-HHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHH-cCCHHHHHHHHhCCcccc----------
Q 040043           25 AAVNEKLETPLHE-ACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACR-RGHVNVVKLMLNQSWLME----------   92 (539)
Q Consensus        25 ~~~n~~g~TpLh~-Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~-~g~~eiv~~Ll~~~~~~~----------   92 (539)
                      +..|-+|.+|+|+ |...|++|+|++|+++|+++. ..+..|.+|+++|+. .++.|++++|+++|++..          
T Consensus        65 ~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN-~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~  143 (631)
T PHA02792         65 DYKNINDFDIFEYLCSDNIDIELLKLLISKGLEIN-SIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKII  143 (631)
T ss_pred             CcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcc-cccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchh
Confidence            4566777888875 445789999999999999884 556678899999866 689999999999987521          


Q ss_pred             -------------------------cccCCCCCcHHHHHHHcC-------CHHHHHHHHhcCCccccccCCCCChHHhHH
Q 040043           93 -------------------------FEEDRDESTPLHVAISRG-------KIDIVKEILKVRPSFCEQADKNRCLPLHYA  140 (539)
Q Consensus        93 -------------------------~~~~~~g~t~Lh~A~~~g-------~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A  140 (539)
                                               ...|..|.||||+|+.++       +.|+++.|+.++.++ +..|..|.||||+|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~  222 (631)
T PHA02792        144 IEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYY  222 (631)
T ss_pred             hhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHH
Confidence                                     023456889999999988       789999999988887 66788899999999


Q ss_pred             HHcC--CHHHHHHHHcCCCccccc-----------c-------cc-------CCCC------------------------
Q 040043          141 SRIG--NVEITKLLLNSKPDMALQ-----------Y-------NN-------NGYT------------------------  169 (539)
Q Consensus       141 ~~~g--~~~~v~~Ll~~~~~~~~~-----------~-------d~-------~g~t------------------------  169 (539)
                      +.+.  +.|++++|++..-+....           .       |.       .|.+                        
T Consensus       223 ~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~  302 (631)
T PHA02792        223 VDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRY  302 (631)
T ss_pred             HHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHH
Confidence            9988  788999888642211100           0       00       1111                        


Q ss_pred             ------HHHHHHHcC--CHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCC--Cc
Q 040043          170 ------PLHQAAING--HVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFG--NT  239 (539)
Q Consensus       170 ------pLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G--~T  239 (539)
                            .||.-..++  +.++++.|++.+....   ...+.++++.|+..++.+++++|++.   +++++.+|.+|  .|
T Consensus       303 ~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~---GADIN~kD~~g~~~T  376 (631)
T PHA02792        303 TDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKN---GNVVVEDDDNIINIM  376 (631)
T ss_pred             hHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHc---CCchhhhcCCCCChh
Confidence                  123333334  4677778887775532   23466779999999999999999997   66788888775  69


Q ss_pred             HHHHHHHcCCHH---HHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCCCch
Q 040043          240 VLHLAILRNNYQ---LAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSPK  302 (539)
Q Consensus       240 ~Lh~A~~~~~~~---iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~  302 (539)
                      |||.|+.....+   ++++|+ ..|+|+|.+|..|.||||+|+..++.+.++.+++.+++++....
T Consensus       377 pLh~A~~n~~~~v~~IlklLI-s~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~  441 (631)
T PHA02792        377 PLFPTLSIHESDVLSILKLCK-PYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTK  441 (631)
T ss_pred             HHHHHHHhccHhHHHHHHHHH-hcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            999988776543   577777 55999999999999999999999999999999999888765443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=1.3e-22  Score=225.41  Aligned_cols=236  Identities=19%  Similarity=0.126  Sum_probs=181.1

Q ss_pred             CceecccCcHHHHHHHHHh--CChhhhccccCCCCHHH-HHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcC-
Q 040043            1 IKAATGFGHIELVTEIIKL--CPQLVAAVNEKLETPLH-EACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRG-   76 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~--~~~~l~~~n~~g~TpLh-~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g-   76 (539)
                      ++.||+.|+.+.|+.+++.  +.+ ++..|..|.|||| .|+.+++.++++.|++.+.     .+..|.||||.|+..+ 
T Consensus        21 ~l~A~~~g~~~~v~~lL~~~~~~~-in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~~   94 (743)
T TIGR00870        21 FLPAAERGDLASVYRDLEEPKKLN-INCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISLEYV   94 (743)
T ss_pred             HHHHHHcCCHHHHHHHhccccccC-CCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhccH
Confidence            4679999999999999988  444 6788999999999 8999999999999999886     5778999999998732 


Q ss_pred             --CHHHHHHHHhCCccc---------ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccc-------------CCC
Q 040043           77 --HVNVVKLMLNQSWLM---------EFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQA-------------DKN  132 (539)
Q Consensus        77 --~~eiv~~Ll~~~~~~---------~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~-------------d~~  132 (539)
                        ..++++.+.+.+...         .......|.||||+|+..|+.++++.|+++++++....             ...
T Consensus        95 ~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~  174 (743)
T TIGR00870        95 DAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYH  174 (743)
T ss_pred             HHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccc
Confidence              233445444444221         11123569999999999999999999999988773211             135


Q ss_pred             CChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcC-----C----HHHHHHHHHhCCC--cc----ccc
Q 040043          133 RCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAING-----H----VKILEAFIASSPT--SF----NCL  197 (539)
Q Consensus       133 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g-----~----~~~v~~Ll~~~~~--~~----~~~  197 (539)
                      |.||||.|+..|+.+++++|++.|++++.. |..|+||||+|+..+     +    ..+.+.++.....  ..    +..
T Consensus       175 g~tpL~~Aa~~~~~~iv~lLl~~gadin~~-d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~  253 (743)
T TIGR00870       175 GESPLNAAACLGSPSIVALLSEDPADILTA-DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVIL  253 (743)
T ss_pred             cccHHHHHHHhCCHHHHHHHhcCCcchhhH-hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhc
Confidence            899999999999999999999999999876 999999999999987     2    2233444433222  12    557


Q ss_pred             cCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHH
Q 040043          198 TTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAIL  246 (539)
Q Consensus       198 d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~  246 (539)
                      |.+|.||||+|+..|+.+++++|++....   ........+.|.+++..
T Consensus       254 N~~g~TPL~~A~~~g~~~l~~lLL~~~~~---~kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       254 NHQGLTPLKLAAKEGRIVLFRLKLAIKYK---QKKFVAWPNGQQLLSLY  299 (743)
T ss_pred             CCCCCCchhhhhhcCCccHHHHHHHHHHh---cceeeccCcchHhHhhh
Confidence            88999999999999999999999985211   22234456667666654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.1e-23  Score=211.45  Aligned_cols=190  Identities=15%  Similarity=0.148  Sum_probs=105.2

Q ss_pred             HHHHcCCHHHHHHHHhCCcccc-----cccCCCCCcHHHHHHH--cCCHHHHHHHHhcCCccccccCCCCChHHhHHHHc
Q 040043           71 LACRRGHVNVVKLMLNQSWLME-----FEEDRDESTPLHVAIS--RGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRI  143 (539)
Q Consensus        71 ~A~~~g~~eiv~~Ll~~~~~~~-----~~~~~~g~t~Lh~A~~--~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~  143 (539)
                      +|+..+..|++++|+.+++.++     ...+..++|+||+++.  .|+.+++++|+++|+++ +.  .++.||||.|+..
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHHHHc
Confidence            5555555555555555555433     0134445555555555  55555555555555554 22  2234555555555


Q ss_pred             CCHHHHHHHHcCCCcccccc-----ccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHH
Q 040043          144 GNVEITKLLLNSKPDMALQY-----NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFI  218 (539)
Q Consensus       144 g~~~~v~~Ll~~~~~~~~~~-----d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~  218 (539)
                      ++.+++++|+++|++.....     +..+.+|+|.|+.+++.++++.|+++++ +++..|..|+||||+|+..|+.++++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GA-DIN~kD~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIE-DINQLDAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcC-CcCcCCCCCCCHHHHHHHcCCHHHHH
Confidence            55555555555554322111     1235566666666666666666665553 35666666666666666666666666


Q ss_pred             HHHhhcccccccccccCCCCcHHHHHHHcCC--------HHHHHHHhhccccCccccc
Q 040043          219 FLAESFDFTGLLHQQDQFGNTVLHLAILRNN--------YQLAEYIIKKTKVDKNCRN  268 (539)
Q Consensus       219 ~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~--------~~iv~~Ll~~~~~~~~~~n  268 (539)
                      +|++.   ++.++.+|..|+||||+|+..|+        .+++++|++ .|++++...
T Consensus       239 lLL~~---GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~-~gadI~~~~  292 (437)
T PHA02795        239 WLLEN---GANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR-EPLSIDCIK  292 (437)
T ss_pred             HHHHC---CCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh-CCCCCCchh
Confidence            66655   44566666666666666666653        466666663 355665544

>PHA02795 ankyrin-like protein; Provisional

Probab=99.91  E-value=6.5e-24  Score=213.07  Aligned_cols=201  Identities=13%  Similarity=0.092  Sum_probs=158.3

Q ss_pred             HHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccc-----cccccCCChHHHHHHH--cCCHHHHHHHH
Q 040043           13 VTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVA-----TLLNQERQSAFLLACR--RGHVNVVKLML   85 (539)
Q Consensus        13 v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~-----~~~~~~g~tpL~~A~~--~g~~eiv~~Ll   85 (539)
                      .++++..+.+ ++.....|     +|+..+..+++++|+.+|++..     -..+..++|+||.|+.  .|+.++|++|+
T Consensus        65 ~~~~~~~~~~-i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         65 YDYFRIHRDN-IDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHHcCcc-hhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            3566666666 55555555     8888888888888888888753     1366778888888888  78888899998


Q ss_pred             hCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccc-----CCCCChHHhHHHHcCCHHHHHHHHcCCCccc
Q 040043           86 NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQA-----DKNRCLPLHYASRIGNVEITKLLLNSKPDMA  160 (539)
Q Consensus        86 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~-----d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  160 (539)
                      ++|++++.   .++.||||.|+..|+.++++.|+.++.+..+..     +..+.|++|.|+..++.+++++|+++|++++
T Consensus       139 ~~GADIn~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN  215 (437)
T PHA02795        139 DHGAVIYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN  215 (437)
T ss_pred             HCCCCCCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC
Confidence            88888762   345788888888888888888888886443332     1347788888888888899999998888888


Q ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCC--------hhHHHHHHhhc
Q 040043          161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK--------YNAFIFLAESF  224 (539)
Q Consensus       161 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~--------~~~v~~Ll~~~  224 (539)
                      .. |..|.||||+|+..|+.++++.|++.+. +++..|..|+||||+|+..|+        .+++++|++.+
T Consensus       216 ~k-D~~G~TpLh~Aa~~g~~eiVelLL~~GA-dIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~g  285 (437)
T PHA02795        216 QL-DAGGRTLLYRAIYAGYIDLVSWLLENGA-NVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREP  285 (437)
T ss_pred             cC-CCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCC
Confidence            76 8888899999999899999888887774 478888888999999888874        57888888763

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=4.2e-24  Score=217.63  Aligned_cols=212  Identities=23%  Similarity=0.296  Sum_probs=119.8

Q ss_pred             cccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHH
Q 040043           61 LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYA  140 (539)
Q Consensus        61 ~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A  140 (539)
                      .|.+|.|+||.|+.+|+.+++++|+++.+..+ ..+..|.+|||+|+..|+.++++.++... +..+.....|.||||.|
T Consensus        45 qd~~gfTalhha~Lng~~~is~llle~ea~ld-l~d~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhla  122 (854)
T KOG0507|consen   45 QDYSGFTLLHHAVLNGQNQISKLLLDYEALLD-LCDTKGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLA  122 (854)
T ss_pred             cCccchhHHHHHHhcCchHHHHHHhcchhhhh-hhhccCcceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchh
Confidence            34455555555555555555555555444443 23344555555555555555555555444 22244445555555555


Q ss_pred             HHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCC-------ccccccCCCCcHHHHHHHhCC
Q 040043          141 SRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPT-------SFNCLTTDGDTVFHLALRFGK  213 (539)
Q Consensus       141 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~-------~~~~~d~~g~t~Lh~Av~~~~  213 (539)
                      +++|+.+++.+|++++++.... |+.+.|+|.+|++-|..++++.|+...-.       ....++..+.+|||+|+++|+
T Consensus       123 aqhgh~dvv~~Ll~~~adp~i~-nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh  201 (854)
T KOG0507|consen  123 AQHGHLEVVFYLLKKNADPFIR-NNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGH  201 (854)
T ss_pred             hhhcchHHHHHHHhcCCCcccc-CcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcch
Confidence            5555555555555555555444 55555555555555555555555443100       012334456677777777777


Q ss_pred             hhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHH
Q 040043          214 YNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKE  280 (539)
Q Consensus       214 ~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~  280 (539)
                      .++++.|++.   +-.+|.....| |+||-|+..|..++|.+|+ +.|++..++|..|+|+|++...
T Consensus       202 ~~~~~~ll~a---g~din~~t~~g-talheaalcgk~evvr~ll-~~gin~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  202 VECMQALLEA---GFDINYTTEDG-TALHEAALCGKAEVVRFLL-EIGINTHIKNQHGQTALDIIID  263 (854)
T ss_pred             HHHHHHHHhc---CCCcccccccc-hhhhhHhhcCcchhhhHHH-hhccccccccccchHHHHHHHh
Confidence            7777777665   33455555555 7777777777777777777 4577777777777777777655

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.91  E-value=1.9e-24  Score=225.79  Aligned_cols=288  Identities=21%  Similarity=0.216  Sum_probs=235.2

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      |-.||+.||.|+|+.|+.+|.+ +.-+|..|.+||.+|+-.||..+|+.|+...+++....|..+.|+|-+||..|..++
T Consensus       761 LT~acaggh~e~vellv~rgan-iehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~v  839 (2131)
T KOG4369|consen  761 LTSACAGGHREEVELLVVRGAN-IEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRV  839 (2131)
T ss_pred             ccccccCccHHHHHHHHHhccc-ccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchH
Confidence            4579999999999999999988 788999999999999999999999999999999988999999999999999999999


Q ss_pred             HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccc-CCCCChHHhHHHHcCCHHHHHHHHcCCCcc
Q 040043           81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQA-DKNRCLPLHYASRIGNVEITKLLLNSKPDM  159 (539)
Q Consensus        81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  159 (539)
                      |++||..+.... .++....|||.+|...|..+++..|+..+..+.... ...|-+||++|..+|+.+.++.|++.|.++
T Consensus       840 velLl~~ganke-hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdi  918 (2131)
T KOG4369|consen  840 VELLLNAGANKE-HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDI  918 (2131)
T ss_pred             HHHHHHhhcccc-ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchh
Confidence            999999998766 567778899999999999999999999988774433 345889999999999999999999999999


Q ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhccccc-----------
Q 040043          160 ALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTG-----------  228 (539)
Q Consensus       160 ~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~-----------  228 (539)
                      +.....+.+|.|-+|+-.|+.+++..||..... +..+-+.|-|||+-++..|..++-++|+..+.+..           
T Consensus       919 NaqIeTNrnTaltla~fqgr~evv~lLLa~~an-vehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dta  997 (2131)
T KOG4369|consen  919 NAQIETNRNTALTLALFQGRPEVVFLLLAAQAN-VEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTA  997 (2131)
T ss_pred             ccccccccccceeeccccCcchHHHHHHHHhhh-hhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCcc
Confidence            888778888999999999999999988877644 78888889999999888888888888877643211           


Q ss_pred             ---------------------ccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhh
Q 040043          229 ---------------------LLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAF  287 (539)
Q Consensus       229 ---------------------~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~  287 (539)
                                           -+..++++|+|+|.+|+..|....+..|+++ ++|++..|+...+++.-|.+.|+.+++
T Consensus       998 lti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~-~ad~d~qdnr~~S~~maafRKgh~~iV 1076 (2131)
T KOG4369|consen  998 LTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSS-VADADQQDNRTNSRTMAAFRKGHFAIV 1076 (2131)
T ss_pred             ceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhc-ccChhhhhcccccccHHHHHhchhhee
Confidence                                 1234555666666666666666666666633 666666666666666666666666655


Q ss_pred             HHHhh
Q 040043          288 SSELQ  292 (539)
Q Consensus       288 ~~~l~  292 (539)
                      .....
T Consensus      1077 k~mv~ 1081 (2131)
T KOG4369|consen 1077 KKMVP 1081 (2131)
T ss_pred             ccccC
Confidence            55443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=3.3e-24  Score=187.88  Aligned_cols=229  Identities=25%  Similarity=0.259  Sum_probs=204.3

Q ss_pred             eecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHH
Q 040043            3 AATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVK   82 (539)
Q Consensus         3 ~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~   82 (539)
                      .|.+.|+.+.+......+++.....+..|..++|.|+-.|+...+..++.++... +..+--+.+|+.+++...+.+.+.
T Consensus        68 ~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~~p~s~~slsVhql~L~~~~  146 (296)
T KOG0502|consen   68 VAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSLSVHQLHLDVVD  146 (296)
T ss_pred             hhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccC-CccccccCChhhHHHHHHHHHHHH
Confidence            4678899999999999998888888999999999999999999999999988766 557888999999999999999988


Q ss_pred             HHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccc
Q 040043           83 LMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQ  162 (539)
Q Consensus        83 ~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~  162 (539)
                      .+.++.-+   ..|+.|+|||.+|+..|+.+++++||+.+++. +.......|+|.+|++.|..++|++|+.++.+++..
T Consensus       147 ~~~~n~VN---~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvy  222 (296)
T KOG0502|consen  147 LLVNNKVN---ACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLTREVDVNVY  222 (296)
T ss_pred             HHhhcccc---CccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCccee
Confidence            87765432   47899999999999999999999999999988 777888999999999999999999999999999986


Q ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHH
Q 040043          163 YNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLH  242 (539)
Q Consensus       163 ~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh  242 (539)
                       |.+|-|||-+|++.|+.++++.|+..+.+ ++..+..|.+++..|+..|+. +++.++++   ..+.+.+|..-.||+|
T Consensus       223 -DwNGgTpLlyAvrgnhvkcve~Ll~sGAd-~t~e~dsGy~~mdlAValGyr-~Vqqvie~---h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  223 -DWNGGTPLLYAVRGNHVKCVESLLNSGAD-VTQEDDSGYWIMDLAVALGYR-IVQQVIEK---HALKLCQDSEKRTPLH  296 (296)
T ss_pred             -ccCCCceeeeeecCChHHHHHHHHhcCCC-cccccccCCcHHHHHHHhhhH-HHHHHHHH---HHHHHhhcccCCCCCC
Confidence             99999999999999999999999998865 788999999999999999988 77777776   3345677877778776

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=2.2e-22  Score=224.75  Aligned_cols=192  Identities=19%  Similarity=0.244  Sum_probs=166.6

Q ss_pred             HHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCC
Q 040043           78 VNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKP  157 (539)
Q Consensus        78 ~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~  157 (539)
                      .++-..+.+.+..   ..+.++.++||.|+..|+.++++.|++.+.+. +..|.+|+||||+|+..|+.+++++|+++|+
T Consensus       507 l~v~~ll~~~~~~---~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga  582 (823)
T PLN03192        507 LNVGDLLGDNGGE---HDDPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHAC  582 (823)
T ss_pred             ccHHHHHhhcccc---cCCccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCC
Confidence            3444444444332   23456778999999999999999999999887 8899999999999999999999999999999


Q ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCC
Q 040043          158 DMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFG  237 (539)
Q Consensus       158 ~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G  237 (539)
                      +++.. |.+|+||||.|+..|+.++++.|+.....   .....|.++||.|+.+|+.+++++|++.   +.++|.+|.+|
T Consensus       583 din~~-d~~G~TpL~~A~~~g~~~iv~~L~~~~~~---~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~---Gadin~~d~~G  655 (823)
T PLN03192        583 NVHIR-DANGNTALWNAISAKHHKIFRILYHFASI---SDPHAAGDLLCTAAKRNDLTAMKELLKQ---GLNVDSEDHQG  655 (823)
T ss_pred             CCCCc-CCCCCCHHHHHHHhCCHHHHHHHHhcCcc---cCcccCchHHHHHHHhCCHHHHHHHHHC---CCCCCCCCCCC
Confidence            99886 99999999999999999999999876533   2235678999999999999999999987   66789999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHhhccccCccccccCC-CCHHHHHHHc
Q 040043          238 NTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTN-QTALDVLKES  281 (539)
Q Consensus       238 ~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g-~t~l~~a~~~  281 (539)
                      +||||+|+..|+.+++++|++ .|+|++..|..| .||++++...
T Consensus       656 ~TpLh~A~~~g~~~iv~~Ll~-~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        656 ATALQVAMAEDHVDMVRLLIM-NGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             CCHHHHHHHCCcHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHH
Confidence            999999999999999999995 599999999998 9999988653

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=6.4e-23  Score=209.08  Aligned_cols=247  Identities=28%  Similarity=0.360  Sum_probs=208.9

Q ss_pred             eecccCcHHHHHHHHHhC------------ChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHH
Q 040043            3 AATGFGHIELVTEIIKLC------------PQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFL   70 (539)
Q Consensus         3 ~Aa~~g~~e~v~~Ll~~~------------~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~   70 (539)
                      -|++.|+.+.|..+++..            ++-.+..|..|.|+||.|+.+|+.+++++|++..+-+ ...+..|.+|||
T Consensus         9 ~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg~~plh   87 (854)
T KOG0507|consen    9 DACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGILPLH   87 (854)
T ss_pred             HhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccCcceEE
Confidence            588999999999999852            2346778889999999999999999999999998866 567799999999


Q ss_pred             HHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHH
Q 040043           71 LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITK  150 (539)
Q Consensus        71 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~  150 (539)
                      +|+.+|+.|+++.++.++...+ ..+..|.||||.|+..|+.+++.+|++++.+. -.+|.++.|+|..|++.|..++++
T Consensus        88 laaw~g~~e~vkmll~q~d~~n-a~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~~Vvq  165 (854)
T KOG0507|consen   88 LAAWNGNLEIVKMLLLQTDILN-AVNIENETPLHLAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGRAEVVQ  165 (854)
T ss_pred             ehhhcCcchHHHHHHhcccCCC-cccccCcCccchhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhhhHHHH
Confidence            9999999999999999985444 67889999999999999999999999999988 678999999999999999999999


Q ss_pred             HHHcCCCccc-------cccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhh
Q 040043          151 LLLNSKPDMA-------LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES  223 (539)
Q Consensus       151 ~Ll~~~~~~~-------~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~  223 (539)
                      .|++..-...       ...+-.+.+|+|+|+++|+.++++.|++.+- +++.....| |+||.|+..|..+++.+|++.
T Consensus       166 ~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~-din~~t~~g-talheaalcgk~evvr~ll~~  243 (854)
T KOG0507|consen  166 MLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGF-DINYTTEDG-TALHEAALCGKAEVVRFLLEI  243 (854)
T ss_pred             HHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCC-Ccccccccc-hhhhhHhhcCcchhhhHHHhh
Confidence            9998732221       1224567899999999999999999998774 466555544 899999999999999999987


Q ss_pred             cccccccccccCCCCcHHHHHHHcC---CHHHHHHHh
Q 040043          224 FDFTGLLHQQDQFGNTVLHLAILRN---NYQLAEYII  257 (539)
Q Consensus       224 ~~~~~~~~~~d~~G~T~Lh~A~~~~---~~~iv~~Ll  257 (539)
                         +.....+|.+|.|+|.+-....   ..+++-++.
T Consensus       244 ---gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~  277 (854)
T KOG0507|consen  244 ---GINTHIKNQHGQTALDIIIDLQENRRYEIAGAVK  277 (854)
T ss_pred             ---ccccccccccchHHHHHHHhcchhhhhhhhhhhh
Confidence               5557789999999998877654   345554444

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.88  E-value=2.3e-22  Score=224.70  Aligned_cols=198  Identities=18%  Similarity=0.184  Sum_probs=169.1

Q ss_pred             CcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhC
Q 040043            8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ   87 (539)
Q Consensus         8 g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~   87 (539)
                      .+.++-..+.+.+..   ..+..+.++||.||..|+.++++.|++.|.++ +..|.+|.||||+|+..|+.+++++|+++
T Consensus       505 ~~l~v~~ll~~~~~~---~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~  580 (823)
T PLN03192        505 HDLNVGDLLGDNGGE---HDDPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKH  580 (823)
T ss_pred             ccccHHHHHhhcccc---cCCccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhc
Confidence            344444444444332   34556789999999999999999999999987 67899999999999999999999999999


Q ss_pred             CcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCC
Q 040043           88 SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNG  167 (539)
Q Consensus        88 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g  167 (539)
                      |++++ ..|.+|.||||.|+..|+.++++.|++.+...   .+..|.++||.|+..|+.++++.|+++|++++.. |.+|
T Consensus       581 gadin-~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~-d~~G  655 (823)
T PLN03192        581 ACNVH-IRDANGNTALWNAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSE-DHQG  655 (823)
T ss_pred             CCCCC-CcCCCCCCHHHHHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCC-CCCC
Confidence            99887 67899999999999999999999999765543   2456779999999999999999999999999886 9999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCccccccCCC-CcHHHHHHHhCChh
Q 040043          168 YTPLHQAAINGHVKILEAFIASSPTSFNCLTTDG-DTVFHLALRFGKYN  215 (539)
Q Consensus       168 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g-~t~Lh~Av~~~~~~  215 (539)
                      .||||.|+..|+.++++.|++++.+ ++..|..| .+|++++......+
T Consensus       656 ~TpLh~A~~~g~~~iv~~Ll~~GAd-v~~~~~~g~~t~~~l~~~~~~~~  703 (823)
T PLN03192        656 ATALQVAMAEDHVDMVRLLIMNGAD-VDKANTDDDFSPTELRELLQKRE  703 (823)
T ss_pred             CCHHHHHHHCCcHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999999988755 77888877 99999886644333

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.88  E-value=3.9e-23  Score=216.08  Aligned_cols=253  Identities=23%  Similarity=0.288  Sum_probs=197.3

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      |-+|+-.||..+|+.|++...++-...|..++|+|-+||..|..++|++||..+++. ..+|-...|||-+|...|..++
T Consensus       794 lImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~i  872 (2131)
T KOG4369|consen  794 LIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKI  872 (2131)
T ss_pred             hhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHH
Confidence            346788889999999988888877778888889999999999999999998888776 4467777888888888888888


Q ss_pred             HHHHHhCCcccccc-cCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcc
Q 040043           81 VKLMLNQSWLMEFE-EDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDM  159 (539)
Q Consensus        81 v~~Ll~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  159 (539)
                      ++.|+..|..++.. -...|..||.+|..+||.+.++.|++.+.++......+.+|+|-+|+..|+.|++.+||.+.++.
T Consensus       873 I~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anv  952 (2131)
T KOG4369|consen  873 IHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANV  952 (2131)
T ss_pred             HHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhh
Confidence            88888888776632 23456778888888888888888888777776666666777777777777777777777766666


Q ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHHhCC----------------------------------CccccccCCCCcHH
Q 040043          160 ALQYNNNGYTPLHQAAINGHVKILEAFIASSP----------------------------------TSFNCLTTDGDTVF  205 (539)
Q Consensus       160 ~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~----------------------------------~~~~~~d~~g~t~L  205 (539)
                      ..+ -+.|.|||.-++..|.+++-..|+..+.                                  ..+...+++|.|+|
T Consensus       953 ehR-aktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~L 1031 (2131)
T KOG4369|consen  953 EHR-AKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVL 1031 (2131)
T ss_pred             hhh-cccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCccc
Confidence            655 5666666666666555555555544332                                  23567788999999


Q ss_pred             HHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043          206 HLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK  258 (539)
Q Consensus       206 h~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  258 (539)
                      .+|+..|+...+..|+++   ..+.+.+|+..++++.-|.++|+.+||++...
T Consensus      1032 wla~~Gg~lss~~il~~~---~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~ 1081 (2131)
T KOG4369|consen 1032 WLASAGGALSSCPILVSS---VADADQQDNRTNSRTMAAFRKGHFAIVKKMVP 1081 (2131)
T ss_pred             chhccCCccccchHHhhc---ccChhhhhcccccccHHHHHhchhheeccccC
Confidence            999999999999999987   55688899999999999999999999998873

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=7.3e-21  Score=178.81  Aligned_cols=173  Identities=23%  Similarity=0.341  Sum_probs=120.6

Q ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHH
Q 040043           24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPL  103 (539)
Q Consensus        24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~L  103 (539)
                      ++..|.+|+|+||||+..+|+++|+.|++.|....+..|..|+||+++|+...        ++                 
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~--------lk-----------------  315 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAK--------LK-----------------  315 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHh--------hc-----------------
Confidence            55667777777777777777777777777776666677777777777765431        00                 


Q ss_pred             HHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHH
Q 040043          104 HVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKIL  183 (539)
Q Consensus       104 h~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v  183 (539)
                          ...+.++|..|...+.-. ......|+|+|++|+.+|+.++|+.||..|+|++.+ |.+|.|+|+.|+++||.|++
T Consensus       316 ----~~~d~~vV~~LF~mgnVN-aKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQ-DdDGSTALMCA~EHGhkEiv  389 (452)
T KOG0514|consen  316 ----QPADRTVVERLFKMGDVN-AKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQ-DDDGSTALMCAAEHGHKEIV  389 (452)
T ss_pred             ----chhhHHHHHHHHhccCcc-hhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccc-cCCccHHHhhhhhhChHHHH
Confidence                012345566666544322 333456777888888888888888888888887776 77788888888888888888


Q ss_pred             HHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccc
Q 040043          184 EAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFT  227 (539)
Q Consensus       184 ~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~  227 (539)
                      +.||.....++...|.+|-|+|.+|.+.|+.+|.-+|..+.+.+
T Consensus       390 klLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~n~~  433 (452)
T KOG0514|consen  390 KLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAHMNIK  433 (452)
T ss_pred             HHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHHHHhh
Confidence            87777777777777778888888888888888777776654443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=1.1e-20  Score=186.84  Aligned_cols=228  Identities=21%  Similarity=0.318  Sum_probs=159.1

Q ss_pred             HHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHH
Q 040043           35 LHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDI  114 (539)
Q Consensus        35 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~  114 (539)
                      +..|++.|+.+-++.|+..+..+ +..|.+|.|+||-||...+.+||++|+++++.++ ..|.+|+||||.|+.+|+.++
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~-~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn-~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASP-NLCNVDGLTALHQACIDDNLEMVKFLVENGANVN-AQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCc-cccCCccchhHHHHHhcccHHHHHHHHHhcCCcc-ccccccCCcchhhcccccHHH
Confidence            45566677777777777766655 5566777777777777777777777777777666 566677777777777777777


Q ss_pred             HHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHH---HHHHhCC
Q 040043          115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE---AFIASSP  191 (539)
Q Consensus       115 v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~---~Ll~~~~  191 (539)
                      +++++..++++ ...+..|..|+..+......++...-...          .|.+ +..+-......+++   ..+. ..
T Consensus       122 ~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r----------~gi~-iea~R~~~e~~ml~D~~q~l~-~G  188 (527)
T KOG0505|consen  122 VEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMAR----------QGID-IEAARKAEEQTMLDDARQWLN-AG  188 (527)
T ss_pred             HHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHH----------hccc-HHHHhhhhHHHHHHHHHHHHh-cc
Confidence            77777777666 44566666666666554444433322211          1111 11111111122222   2233 33


Q ss_pred             CccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCC
Q 040043          192 TSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTN  271 (539)
Q Consensus       192 ~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g  271 (539)
                      ...+..+..|.|.||+|+.+|..++..+|++.   +..++.+|.+|+||||.|+..+..++.++|+ ..|++.+.++..|
T Consensus       189 ~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~a---g~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~-~~ga~~d~~t~~g  264 (527)
T KOG0505|consen  189 AELDARHARGATALHVAAANGYTEVAALLLQA---GYSVNIKDYDGWTPLHAAAHWGQEDACELLV-EHGADMDAKTKMG  264 (527)
T ss_pred             ccccccccccchHHHHHHhhhHHHHHHHHHHh---ccCcccccccCCCcccHHHHhhhHhHHHHHH-HhhcccchhhhcC
Confidence            44566777799999999999999999999998   5568999999999999999999999999777 5599999999999


Q ss_pred             CCHHHHHHHc
Q 040043          272 QTALDVLKES  281 (539)
Q Consensus       272 ~t~l~~a~~~  281 (539)
                      +||++++.+.
T Consensus       265 ~~p~dv~dee  274 (527)
T KOG0505|consen  265 ETPLDVADEE  274 (527)
T ss_pred             CCCccchhhh
Confidence            9999998764

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=2.2e-20  Score=175.62  Aligned_cols=172  Identities=21%  Similarity=0.295  Sum_probs=148.5

Q ss_pred             CHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHc-----CCHHHHHH
Q 040043           77 HVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRI-----GNVEITKL  151 (539)
Q Consensus        77 ~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~-----g~~~~v~~  151 (539)
                      ...+++|.++       ..|.+|.|+||+++..+++++|+.||+.+....+..++-|.||+++++..     .+.++|..
T Consensus       253 s~~lL~yvVN-------laDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~  325 (452)
T KOG0514|consen  253 SPPLLEYVVN-------LADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVER  325 (452)
T ss_pred             ChHHHHHHhh-------hhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHH
Confidence            4556666554       35888999999999999999999999999998899999999999999864     35788888


Q ss_pred             HHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccc
Q 040043          152 LLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLH  231 (539)
Q Consensus       152 Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~  231 (539)
                      |.+.| +++......|.|+|++|+.+|+.++++.||..+ .++|..|.+|-|+|++|+++|+.+++++|+.....  ++.
T Consensus       326 LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacg-AdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~c--d~s  401 (452)
T KOG0514|consen  326 LFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACG-ADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSC--DIS  401 (452)
T ss_pred             HHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHcc-CCCccccCCccHHHhhhhhhChHHHHHHHhccCcc--cce
Confidence            88776 455555788999999999999999999999655 56999999999999999999999999999987544  567


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHhhc
Q 040043          232 QQDQFGNTVLHLAILRNNYQLAEYIIKK  259 (539)
Q Consensus       232 ~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  259 (539)
                      ..|.+|-|+|.+|-..|+.+|.-+|..+
T Consensus       402 LtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  402 LTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             eecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            7899999999999999999998887644

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.81  E-value=6.8e-20  Score=181.26  Aligned_cols=225  Identities=22%  Similarity=0.300  Sum_probs=165.6

Q ss_pred             eecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHH
Q 040043            3 AATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVK   82 (539)
Q Consensus         3 ~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~   82 (539)
                      -|+..|+.+-|+.++..+.. .+..|.+|.|+||.||...+.+||++|++.++++ +..|.+|+||||.|+..|+.++++
T Consensus        46 ~A~~~~d~~ev~~ll~~ga~-~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~i~~  123 (527)
T KOG0505|consen   46 EACSRGDLEEVRKLLNRGAS-PNLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLNIVE  123 (527)
T ss_pred             hccccccHHHHHHHhccCCC-ccccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHHHHH
Confidence            47889999999999999877 5889999999999999999999999999999999 678999999999999999999999


Q ss_pred             HHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcC-C---HHHHHHHHcCCCc
Q 040043           83 LMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG-N---VEITKLLLNSKPD  158 (539)
Q Consensus        83 ~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g-~---~~~v~~Ll~~~~~  158 (539)
                      +|++++++.. ..+.+|..|+..|......+++..-...          .|.+ + -+++.. .   ..-++..+..|..
T Consensus       124 ~li~~gA~~~-avNsdg~~P~dl~e~ea~~~~l~~~~~r----------~gi~-i-ea~R~~~e~~ml~D~~q~l~~G~~  190 (527)
T KOG0505|consen  124 YLIQHGANLL-AVNSDGNMPYDLAEDEATLDVLETEMAR----------QGID-I-EAARKAEEQTMLDDARQWLNAGAE  190 (527)
T ss_pred             HHHHhhhhhh-hccCCCCCccccccCcchhHHHHHHHHH----------hccc-H-HHHhhhhHHHHHHHHHHHHhcccc
Confidence            9999999877 5677888887776655444443333221          1111 1 111111 1   1122333445665


Q ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCC
Q 040043          159 MALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGN  238 (539)
Q Consensus       159 ~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~  238 (539)
                      .... +..|-|.||.|+.+|..++.+.|++.+ ..++..|.+|+||||.|+..|+.+++++|+++   ++.++.....|.
T Consensus       191 ~d~~-~~rG~T~lHvAaa~Gy~e~~~lLl~ag-~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~---ga~~d~~t~~g~  265 (527)
T KOG0505|consen  191 LDAR-HARGATALHVAAANGYTEVAALLLQAG-YSVNIKDYDGWTPLHAAAHWGQEDACELLVEH---GADMDAKTKMGE  265 (527)
T ss_pred             cccc-ccccchHHHHHHhhhHHHHHHHHHHhc-cCcccccccCCCcccHHHHhhhHhHHHHHHHh---hcccchhhhcCC
Confidence            5554 444777777777777777777777665 34677777777777777777777777777776   445666777777


Q ss_pred             cHHHHHHHc
Q 040043          239 TVLHLAILR  247 (539)
Q Consensus       239 T~Lh~A~~~  247 (539)
                      ||+.+|...
T Consensus       266 ~p~dv~dee  274 (527)
T KOG0505|consen  266 TPLDVADEE  274 (527)
T ss_pred             CCccchhhh
Confidence            777777643

>PHA02741 hypothetical protein; Provisional

Probab=99.79  E-value=1.3e-18  Score=157.02  Aligned_cols=132  Identities=17%  Similarity=0.203  Sum_probs=90.7

Q ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHhc------CcccccccccCCChHHHHHHHcCC----HHHHHHHHhCCccccc
Q 040043           24 VAAVNEKLETPLHEACRQGNAEISALLLKT------NLFVATLLNQERQSAFLLACRRGH----VNVVKLMLNQSWLMEF   93 (539)
Q Consensus        24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~------~~~~~~~~~~~g~tpL~~A~~~g~----~eiv~~Ll~~~~~~~~   93 (539)
                      ++.+|..|.||||+|++.|+.++++.|+..      +.++ +.+|..|.||||+|+..|+    .+++++|++.+++++ 
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin-   91 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN-   91 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC-
Confidence            456777888888888888888888887542      2333 5567777777777777777    466777777776665 


Q ss_pred             ccC-CCCCcHHHHHHHcCCHHHHHHHHhc-CCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCc
Q 040043           94 EED-RDESTPLHVAISRGKIDIVKEILKV-RPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPD  158 (539)
Q Consensus        94 ~~~-~~g~t~Lh~A~~~g~~~~v~~LL~~-~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  158 (539)
                      ..+ ..|.||||+|+..++.++++.|+.. +.++ +..|..|+||||+|+..++.+++++|++.++.
T Consensus        92 ~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         92 AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            334 3677777777777777777777753 4443 56666777777777777777777777665433

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.79  E-value=2.1e-18  Score=155.03  Aligned_cols=140  Identities=13%  Similarity=0.228  Sum_probs=105.2

Q ss_pred             hhccccCCCCHHHHHHHcCCH----HHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH---HHHHHhCCcccccccC
Q 040043           24 VAAVNEKLETPLHEACRQGNA----EISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV---VKLMLNQSWLMEFEED   96 (539)
Q Consensus        24 l~~~n~~g~TpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei---v~~Ll~~~~~~~~~~~   96 (539)
                      +...+.++.++||.||+.|+.    +++++|++.+..+ +..|..|+||||+|+..|+.+.   +++|++++.+++ ..+
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin-~~d   90 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN-ARE   90 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC-CCC
Confidence            445667788888888888887    5556677777655 5667788888888888877554   788888887776 344


Q ss_pred             -CCCCcHHHHHHHcCCHHHHHHHHh-cCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCC
Q 040043           97 -RDESTPLHVAISRGKIDIVKEILK-VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNG  167 (539)
Q Consensus        97 -~~g~t~Lh~A~~~g~~~~v~~LL~-~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g  167 (539)
                       ..|.||||+|+..|+.+++++|++ .+.++ +..|..|.||||+|+..++.+++++|+++|++.+.. +..|
T Consensus        91 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~-~~~~  161 (166)
T PHA02743         91 LGTGNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDP-LSIG  161 (166)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-ccCC
Confidence             578888888888888888888885 45555 667788888888888888888888888888777654 4444

>PHA02741 hypothetical protein; Provisional

Probab=99.78  E-value=1.7e-18  Score=156.25  Aligned_cols=127  Identities=22%  Similarity=0.283  Sum_probs=73.1

Q ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHhC-----CCccccccCCCCcHHHHHHHhCC----hhHHHHHHhhccccccccccc
Q 040043          164 NNNGYTPLHQAAINGHVKILEAFIASS-----PTSFNCLTTDGDTVFHLALRFGK----YNAFIFLAESFDFTGLLHQQD  234 (539)
Q Consensus       164 d~~g~tpLh~Aa~~g~~~~v~~Ll~~~-----~~~~~~~d~~g~t~Lh~Av~~~~----~~~v~~Ll~~~~~~~~~~~~d  234 (539)
                      |..|.||||.|++.|+.++++.|+...     +..++..|..|+||||+|+..++    .+++++|++.   +..+|.+|
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~---gadin~~~   94 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL---GADINAQE   94 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc---CCCCCCCC
Confidence            444555555555555555555443211     12345555556666666665555    3455555543   34456665


Q ss_pred             C-CCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhh
Q 040043          235 Q-FGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQS  293 (539)
Q Consensus       235 ~-~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~  293 (539)
                      . +|+||||+|+..++.+++++|+...+++++.+|..|+|||++|...++.++++.+++.
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            3 6666677666666666666666545666666666677777776666666666555543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.78  E-value=2.1e-17  Score=171.49  Aligned_cols=192  Identities=22%  Similarity=0.297  Sum_probs=133.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCC---------cccccccCCCCCcHHHHHHHc---CCHHHHHHHHhcCCcccccc---
Q 040043           65 RQSAFLLACRRGHVNVVKLMLNQS---------WLMEFEEDRDESTPLHVAISR---GKIDIVKEILKVRPSFCEQA---  129 (539)
Q Consensus        65 g~tpL~~A~~~g~~eiv~~Ll~~~---------~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~LL~~~~~~~~~~---  129 (539)
                      .+.++..|...+..+....++...         .+.+ .+...|.|.||.|..+   ++.++++.|++..|.+++..   
T Consensus       101 d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~-~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~  179 (782)
T KOG3676|consen  101 DRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLN-ERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTS  179 (782)
T ss_pred             chhhhhhccccccHHHHhccchhhhhhhhhhhhhccc-cccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhh
Confidence            347788888888888888777655         2222 3467899999999974   56799999999988876643   


Q ss_pred             -CCCCChHHhHHHHcCCHHHHHHHHcCCCcccccc--------cc--------------CCCCHHHHHHHcCCHHHHHHH
Q 040043          130 -DKNRCLPLHYASRIGNVEITKLLLNSKPDMALQY--------NN--------------NGYTPLHQAAINGHVKILEAF  186 (539)
Q Consensus       130 -d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~--------d~--------------~g~tpLh~Aa~~g~~~~v~~L  186 (539)
                       ...|.||||.|+.+.+.++|++|++.|+|++.+.        |.              .|..||.+||..++.++++.|
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence             4569999999999999999999999999987531        11              245566666666666666666


Q ss_pred             HHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhc
Q 040043          187 IASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK  259 (539)
Q Consensus       187 l~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  259 (539)
                      ++++ .+++..|.+|+|+||..|.+-..++..++++.+.. .+...+++.|-|||-+|++.|..++.+.+++.
T Consensus       260 l~~g-Ad~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~-~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  260 LAHG-ADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN-ALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HhcC-CCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC-ccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            6533 34566666666666666666666666666665443 33555566666666666666666666666644

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.78  E-value=2.7e-18  Score=145.42  Aligned_cols=147  Identities=24%  Similarity=0.312  Sum_probs=123.2

Q ss_pred             HHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChh
Q 040043          136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYN  215 (539)
Q Consensus       136 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~  215 (539)
                      .+.+|+..+....|+.||+..++....+|.+|+||||-|+.+|+.++++.|+..+.. .+.+...|+||||-|++.++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcccchh
Confidence            566788888888888888888877777788888888888888888888888877644 6778888888888888888888


Q ss_pred             HHHHHHhhcccccccccccCCCCcHHHHHHHcCC-HHHHHHHhhccccCccccccCCCCHHHHHHHcCCchh
Q 040043          216 AFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNN-YQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEA  286 (539)
Q Consensus       216 ~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~-~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~  286 (539)
                      ++-+|++.   ++++|.+.+...||||+||...+ ...+.+|+...++++..+|+.+.||+++|.+.+-...
T Consensus       145 va~~LLqh---gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~  213 (228)
T KOG0512|consen  145 VAGRLLQH---GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHY  213 (228)
T ss_pred             HHHHHHhc---cCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHH
Confidence            88888887   66789999999999999998876 4567888888999999999999999999998775443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.77  E-value=9e-18  Score=162.69  Aligned_cols=157  Identities=13%  Similarity=0.147  Sum_probs=120.5

Q ss_pred             hhccccCCCCH-HHHHHHcCCHHHHHHHHhcCcccccc---cccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCC
Q 040043           24 VAAVNEKLETP-LHEACRQGNAEISALLLKTNLFVATL---LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDE   99 (539)
Q Consensus        24 l~~~n~~g~Tp-Lh~Aa~~g~~~iv~~Ll~~~~~~~~~---~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g   99 (539)
                      +..+|..|.|+ ||.|+..|+.++++.|++.|+++...   .+..|.||||+|+..|+.+++++|+++|++++...+..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            56678888764 66666778899999999999887432   145788999999999999999999999888873345578


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCC
Q 040043          100 STPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH  179 (539)
Q Consensus       100 ~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~  179 (539)
                      .||||.|+..|+.++++.|++.++++ +..|..|.||||+|+..++.+++..+...  .    .+..+.+|.+.+   ++
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~---~n  174 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICDN--E----ISNFYKHPKKIL---IN  174 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcCC--c----ccccccChhhhh---cc
Confidence            88999998888889999888888877 67788888999988888888877666532  1    255667787764   35


Q ss_pred             HHHHHHHHHhC
Q 040043          180 VKILEAFIASS  190 (539)
Q Consensus       180 ~~~v~~Ll~~~  190 (539)
                      .++++.|+.+.
T Consensus       175 ~ei~~~Lish~  185 (300)
T PHA02884        175 FDILKILVSHF  185 (300)
T ss_pred             HHHHHHHHHHH
Confidence            77777777654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.77  E-value=1.5e-18  Score=154.47  Aligned_cols=133  Identities=16%  Similarity=0.212  Sum_probs=98.6

Q ss_pred             hhhccccCCCCHHHHHHHcCCHHHHHHHHhcC------cccccccccCCChHHHHHHHcCCH---HHHHHHHhCCccccc
Q 040043           23 LVAAVNEKLETPLHEACRQGNAEISALLLKTN------LFVATLLNQERQSAFLLACRRGHV---NVVKLMLNQSWLMEF   93 (539)
Q Consensus        23 ~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~------~~~~~~~~~~g~tpL~~A~~~g~~---eiv~~Ll~~~~~~~~   93 (539)
                      ..+.+|..|.||||+||+.|+..  +++...+      .......|.+|.||||+|+..|+.   +++++|++.+.+++ 
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin-   85 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN-   85 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc-
Confidence            35678889999999999999843  3322211      222344677888888888888876   45778888887776 


Q ss_pred             ccC-CCCCcHHHHHHHcCCHHHHHHHHhc-CCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcc
Q 040043           94 EED-RDESTPLHVAISRGKIDIVKEILKV-RPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDM  159 (539)
Q Consensus        94 ~~~-~~g~t~Lh~A~~~g~~~~v~~LL~~-~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  159 (539)
                      ..+ ..|.||||+|+..|+.++++.|+.. +.+. +..|..|.||||+|+..|+.+++++|++.|++.
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            344 5788888888888888888888864 4444 677888888888888888888888888887654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.77  E-value=5.1e-18  Score=152.51  Aligned_cols=138  Identities=15%  Similarity=0.172  Sum_probs=75.6

Q ss_pred             CCCCChHHhHHHHcCCH----HHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHH---HHHHHHhCCCcccccc-CCC
Q 040043          130 DKNRCLPLHYASRIGNV----EITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKI---LEAFIASSPTSFNCLT-TDG  201 (539)
Q Consensus       130 d~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~---v~~Ll~~~~~~~~~~d-~~g  201 (539)
                      +.++.+++|.|++.|+.    +++++|++.++.++.. |..|+||||+|+..|+.+.   ++.|++.+ ..++.+| ..|
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~-d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G-adin~~d~~~g   94 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRY-DHHGRQCTHMVAWYDRANAVMKIELLVNMG-ADINARELGTG   94 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhcc-CCCCCcHHHHHHHhCccCHHHHHHHHHHcC-CCCCCCCCCCC
Confidence            34444555555555554    3334444445444433 5555555555555554332   44444443 2344554 355


Q ss_pred             CcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCC
Q 040043          202 DTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQ  272 (539)
Q Consensus       202 ~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~  272 (539)
                      +||||+|+..++.+++++|++.  .+..++.+|..|.||||+|+..++.+++++|++ .|++++.++..|.
T Consensus        95 ~TpLh~A~~~g~~~iv~~Ll~~--~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~  162 (166)
T PHA02743         95 NTLLHIAASTKNYELAEWLCRQ--LGVNLGAINYQHETAYHIAYKMRDRRMMEILRA-NGAVCDDPLSIGL  162 (166)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhc--cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcccCCc
Confidence            5666666666666666655531  133455666677777777777777777777763 4677776666654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.76  E-value=1.8e-17  Score=160.55  Aligned_cols=152  Identities=22%  Similarity=0.275  Sum_probs=100.5

Q ss_pred             cCCCCCc-HHHHHHHcCCHHHHHHHHhcCCcccccc----CCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCC
Q 040043           95 EDRDEST-PLHVAISRGKIDIVKEILKVRPSFCEQA----DKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYT  169 (539)
Q Consensus        95 ~~~~g~t-~Lh~A~~~g~~~~v~~LL~~~~~~~~~~----d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  169 (539)
                      .|..|.| +||.|+..|+.++++.|++.|+++ +..    +..|.||||+|+..++.+++++|+++|++++...+..|.|
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            3444444 556666666777777777777665 333    3467777777777777777777777777776543456777


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCC
Q 040043          170 PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNN  249 (539)
Q Consensus       170 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~  249 (539)
                      |||.|+..|+.++++.|+..++ +++..|..|.||||+|+..++.+++..+..        +..+..+.+|++.+   ++
T Consensus       107 pLh~Aa~~~~~eivklLL~~GA-din~kd~~G~TpL~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~---~n  174 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGA-DINIQTNDMVTPIELALMICNNFLAFMICD--------NEISNFYKHPKKIL---IN  174 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHhCChhHHHHhcC--------CcccccccChhhhh---cc
Confidence            7777777777777777776653 356677777777777777766666544421        12466777788765   36


Q ss_pred             HHHHHHHhhc
Q 040043          250 YQLAEYIIKK  259 (539)
Q Consensus       250 ~~iv~~Ll~~  259 (539)
                      .++++.|+.+
T Consensus       175 ~ei~~~Lish  184 (300)
T PHA02884        175 FDILKILVSH  184 (300)
T ss_pred             HHHHHHHHHH
Confidence            7888877744

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.74  E-value=9.5e-18  Score=142.14  Aligned_cols=144  Identities=21%  Similarity=0.200  Sum_probs=102.1

Q ss_pred             HHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHH
Q 040043           35 LHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDI  114 (539)
Q Consensus        35 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~  114 (539)
                      +..|+..+.+..|+.|++..++..+.+|.+|.||||-|+.+|+.+||+.|+..+++.. .+...|+||||-||.-++.++
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~-a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE-AKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcc-cccccCccchhhhhcccchhH
Confidence            5567777777777877777777777777888888888888888888887777777766 566777888888887778888


Q ss_pred             HHHHHhcCCccccccCCCCChHHhHHHHcCCHH-HHHHHHcC-CCccccccccCCCCHHHHHHHcCCHH
Q 040043          115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVE-ITKLLLNS-KPDMALQYNNNGYTPLHQAAINGHVK  181 (539)
Q Consensus       115 v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~-~v~~Ll~~-~~~~~~~~d~~g~tpLh~Aa~~g~~~  181 (539)
                      +..||++++++ +.......||||+||...+.. .+++|+.. +..+.. .+..+.||+.+|-+.+-..
T Consensus       146 a~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~-~nn~eeta~~iARRT~~s~  212 (228)
T KOG0512|consen  146 AGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGL-KNNLEETAFDIARRTSMSH  212 (228)
T ss_pred             HHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhh-hcCccchHHHHHHHhhhhH
Confidence            88888877777 555666678888887766543 34444433 233333 3677778888877776543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.74  E-value=1.1e-17  Score=148.79  Aligned_cols=97  Identities=23%  Similarity=0.318  Sum_probs=52.4

Q ss_pred             ccCCCCcHHHHHHHhCChh---HHHHHHhhccccccccccc-CCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCC
Q 040043          197 LTTDGDTVFHLALRFGKYN---AFIFLAESFDFTGLLHQQD-QFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQ  272 (539)
Q Consensus       197 ~d~~g~t~Lh~Av~~~~~~---~v~~Ll~~~~~~~~~~~~d-~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~  272 (539)
                      .|.+|+||||+|+..++.+   ++++|++.   +..++.+| .+|+||||+|+..++.+++++|+.+.+++++.+|..|+
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~---gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~  127 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEW---GADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFK  127 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHc---CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCC
Confidence            3455555555555555443   33444443   33455555 35666666666666666666555444555666666666


Q ss_pred             CHHHHHHHcCCchhhHHHhhhccC
Q 040043          273 TALDVLKESGTKEAFSSELQSVEE  296 (539)
Q Consensus       273 t~l~~a~~~~~~~~~~~~l~~~~~  296 (539)
                      ||+++|...|+.++++.+++.+++
T Consensus       128 tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736        128 TPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC
Confidence            666666655555555555554443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.71  E-value=1.2e-16  Score=165.98  Aligned_cols=185  Identities=23%  Similarity=0.207  Sum_probs=151.3

Q ss_pred             eecccCcHHHHHHHHHhC--------ChhhhccccCCCCHHHHHHHc---CCHHHHHHHHhcCcccccc----cccCCCh
Q 040043            3 AATGFGHIELVTEIIKLC--------PQLVAAVNEKLETPLHEACRQ---GNAEISALLLKTNLFVATL----LNQERQS   67 (539)
Q Consensus         3 ~Aa~~g~~e~v~~Ll~~~--------~~~l~~~n~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~----~~~~g~t   67 (539)
                      .|...|.++....+.+.+        ...++.+...|+|.||.|..+   ++.++++.|++.-|.+.+.    ....|+|
T Consensus       107 ~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqS  186 (782)
T KOG3676|consen  107 IADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQS  186 (782)
T ss_pred             hccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcc
Confidence            355566666666666544        233677788999999999983   4668999999987765432    3468999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCcccccc-------cC---------------CCCCcHHHHHHHcCCHHHHHHHHhcCCcc
Q 040043           68 AFLLACRRGHVNVVKLMLNQSWLMEFE-------ED---------------RDESTPLHVAISRGKIDIVKEILKVRPSF  125 (539)
Q Consensus        68 pL~~A~~~g~~eiv~~Ll~~~~~~~~~-------~~---------------~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~  125 (539)
                      |||+|+.+.+.++|++|++.|++++..       .+               ..|..||..|+..++.|+++.|+++++++
T Consensus       187 aLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~  266 (782)
T KOG3676|consen  187 ALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADP  266 (782)
T ss_pred             hHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCC
Confidence            999999999999999999999987631       11               13567999999999999999999988887


Q ss_pred             ccccCCCCChHHhHHHHcCCHHHHHHHHcCCCc--cccccccCCCCHHHHHHHcCCHHHHHHHHHh
Q 040043          126 CEQADKNRCLPLHYASRIGNVEITKLLLNSKPD--MALQYNNNGYTPLHQAAINGHVKILEAFIAS  189 (539)
Q Consensus       126 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~--~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~  189 (539)
                       +.+|.+|+|.||..+.+-..++..+++++|++  ... +|..|.|||.+||+.|..++.+.+++.
T Consensus       267 -~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v-~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  267 -NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHV-RNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             -CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccc-cccCCCChHHHHHHhhhHHHHHHHHHh
Confidence             88899999999999999888999999999988  444 489999999999999999999999987

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.67  E-value=2.7e-17  Score=150.19  Aligned_cols=111  Identities=32%  Similarity=0.419  Sum_probs=71.6

Q ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHH
Q 040043          164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHL  243 (539)
Q Consensus       164 d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~  243 (539)
                      |..|.+|||+|++.|+..+++.|+.++. -++..+....||||+|+.+|+.++++.|++.   ++++|..+..||||||+
T Consensus        31 ddhgfsplhwaakegh~aivemll~rga-rvn~tnmgddtplhlaaahghrdivqkll~~---kadvnavnehgntplhy  106 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHVAIVEMLLSRGA-RVNSTNMGDDTPLHLAAAHGHRDIVQKLLSR---KADVNAVNEHGNTPLHY  106 (448)
T ss_pred             cccCcchhhhhhhcccHHHHHHHHhccc-ccccccCCCCcchhhhhhcccHHHHHHHHHH---hcccchhhccCCCchhh
Confidence            5555555555555555555555555442 2455555555555555555665555555554   44577777778888888


Q ss_pred             HHHcCCHHHHHHHhhccccCccccccCCCCHHHHHH
Q 040043          244 AILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLK  279 (539)
Q Consensus       244 A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~  279 (539)
                      ||.-|.-.+.+-|+ ..|+.+++.|++|.||++.|.
T Consensus       107 acfwgydqiaedli-~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  107 ACFWGYDQIAEDLI-SCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hhhhcHHHHHHHHH-hccceeeecccCCCCchhhhc
Confidence            88777777777777 457788888888888887663

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.64  E-value=1.2e-16  Score=145.88  Aligned_cols=133  Identities=22%  Similarity=0.274  Sum_probs=100.5

Q ss_pred             ccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHH
Q 040043            6 GFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLML   85 (539)
Q Consensus         6 ~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll   85 (539)
                      +.|+.-.|+..++.....++.-|.+|.+|||.||+.|+..+++.|+.+|+.+ +..|....||||+|+..||.++|+.|+
T Consensus         9 regna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    9 REGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHH
Confidence            3444444444455544557777888888888888888888888888888777 556777778888888888888888888


Q ss_pred             hCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHH
Q 040043           86 NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYAS  141 (539)
Q Consensus        86 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~  141 (539)
                      +..++++ ..++.|.||||+||.-|...+++.|+..++.. +..+..|.|||..|-
T Consensus        88 ~~kadvn-avnehgntplhyacfwgydqiaedli~~ga~v-~icnk~g~tpldkak  141 (448)
T KOG0195|consen   88 SRKADVN-AVNEHGNTPLHYACFWGYDQIAEDLISCGAAV-NICNKKGMTPLDKAK  141 (448)
T ss_pred             HHhcccc-hhhccCCCchhhhhhhcHHHHHHHHHhcccee-eecccCCCCchhhhc
Confidence            8877776 56778888888888888888888888777766 777888888887664

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.61  E-value=1.4e-14  Score=123.18  Aligned_cols=123  Identities=36%  Similarity=0.579  Sum_probs=74.2

Q ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHH
Q 040043           27 VNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVA  106 (539)
Q Consensus        27 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A  106 (539)
                      +|..|.||||+|+..|+.++++.|++.+... ...+..|.+|||.|+..++.+++++|++.+.... ..+..|.||+|.|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN-ARDKDGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHH
Confidence            3456677777777777777777777666554 4455566666666666666666666666654333 3345555666666


Q ss_pred             HHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHH
Q 040043          107 ISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL  152 (539)
Q Consensus       107 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~L  152 (539)
                      +..++.+++++|++.+... +..|..|.||++.|...++.+++++|
T Consensus        81 ~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          81 ARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            6666666666666654333 34455555666666665555555554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.59  E-value=2.8e-14  Score=121.34  Aligned_cols=122  Identities=37%  Similarity=0.644  Sum_probs=74.8

Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHH
Q 040043           62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYAS  141 (539)
Q Consensus        62 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~  141 (539)
                      |.+|.||||.|+..|+.+++++|++.+.... ..+..|.+|+|.|+..++.++++.|++.++.. +..+..|.||+|+|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~-~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHH
Confidence            4556666666666666666666666665542 35556666666666666666666666665433 444556666666666


Q ss_pred             HcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHH
Q 040043          142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF  186 (539)
Q Consensus       142 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~L  186 (539)
                      ..++.+++++|++.+.+.... +..|.||++.|...++.++++.|
T Consensus        82 ~~~~~~~~~~L~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          82 RNGNLDVVKLLLKHGADVNAR-DKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HcCcHHHHHHHHHcCCCCccc-CCCCCCHHHHHHhcCCHHHHHHh
Confidence            666666666666665554443 55566666666666666665554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.56  E-value=2.4e-14  Score=114.55  Aligned_cols=83  Identities=25%  Similarity=0.367  Sum_probs=34.7

Q ss_pred             ceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHH
Q 040043            2 KAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVV   81 (539)
Q Consensus         2 h~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv   81 (539)
                      |+|++.|+.+++++|++.+.+. +.    |+||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++
T Consensus         2 ~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    2 HIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHHHH
Confidence            4444444444444444433331 11    444444444444444444444444433 33334444444444444444444


Q ss_pred             HHHHhCCcc
Q 040043           82 KLMLNQSWL   90 (539)
Q Consensus        82 ~~Ll~~~~~   90 (539)
                      ++|+++|.+
T Consensus        76 ~~Ll~~g~~   84 (89)
T PF12796_consen   76 KLLLEHGAD   84 (89)
T ss_dssp             HHHHHTTT-
T ss_pred             HHHHHcCCC
Confidence            444444433

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.56  E-value=2.2e-14  Score=114.80  Aligned_cols=60  Identities=42%  Similarity=0.612  Sum_probs=24.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcc
Q 040043           99 ESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDM  159 (539)
Q Consensus        99 g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  159 (539)
                      |.||||+|+..|+.+++++|++.+++. +..|.+|+||||+|+..|+.+++++|+++|+++
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLEIVKLLLEHGADV   85 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-T
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            333444444444444444444433333 333344444444444444444444444444433

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.42  E-value=4.8e-12  Score=119.59  Aligned_cols=128  Identities=28%  Similarity=0.451  Sum_probs=89.9

Q ss_pred             cccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCC-----HHHHHHHHhcCC--ccccccCCCC
Q 040043           61 LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGK-----IDIVKEILKVRP--SFCEQADKNR  133 (539)
Q Consensus        61 ~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~-----~~~v~~LL~~~~--~~~~~~d~~g  133 (539)
                      .+..+.++++.++..+..+++++++..+.++ ...+.+|.||||.|+..++     .++++.|++.+.  +..+..|..|
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            4455667777777777777777777777766 3667777777777777777     777777777777  4556667777


Q ss_pred             ChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhC
Q 040043          134 CLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASS  190 (539)
Q Consensus       134 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~  190 (539)
                      .||||+|+..|+.++++.|++.++++... +..|.|+++.|+..++.++++.++...
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSR-NSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCccc-ccCCCcchhhhcccchHHHHHHHHhcC
Confidence            77777777777777777777777776665 667777777777777777777666543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.42  E-value=5.8e-12  Score=119.00  Aligned_cols=126  Identities=29%  Similarity=0.431  Sum_probs=71.8

Q ss_pred             cCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCC-----HHHHHHHHHhCC--CccccccCCC
Q 040043          129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH-----VKILEAFIASSP--TSFNCLTTDG  201 (539)
Q Consensus       129 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~-----~~~v~~Ll~~~~--~~~~~~d~~g  201 (539)
                      .+..+.+++|.++..+..+++++++..+.+++. .+.+|.||||+|+..++     .++++.|++.+.  ......|.+|
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNA-KDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCccc-ccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            344455555555555555555555555555533 25555566666555555     555555555555  3444455555


Q ss_pred             CcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043          202 DTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK  258 (539)
Q Consensus       202 ~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  258 (539)
                      +||||+|+..|+.++++++++.   +..++..+..|.|++|.|+..++.++++.++.
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~---~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEA---GADPNSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhc---CCCCcccccCCCcchhhhcccchHHHHHHHHh
Confidence            5555555555555555555554   33444556666666666666666666666653

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.38  E-value=2.4e-12  Score=97.86  Aligned_cols=98  Identities=21%  Similarity=0.214  Sum_probs=69.5

Q ss_pred             eecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHH
Q 040043            3 AATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVK   82 (539)
Q Consensus         3 ~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~   82 (539)
                      +++++|.++-|+..+..+-+ ++..- .|+||||+|+..|..+++++|+..|+++ ..+|+.|-|||.-|+..||.++|+
T Consensus         8 W~vkNG~~DeVk~~v~~g~n-Vn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~~cVk   84 (117)
T KOG4214|consen    8 WNVKNGEIDEVKQSVNEGLN-VNEIY-GGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHRDCVK   84 (117)
T ss_pred             hhhccCcHHHHHHHHHcccc-HHHHh-CCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhHHHHH
Confidence            56677788888877777744 33222 6778888888888888888888887777 456777778887777778888888


Q ss_pred             HHHhCCcccccccCCCCCcHHH
Q 040043           83 LMLNQSWLMEFEEDRDESTPLH  104 (539)
Q Consensus        83 ~Ll~~~~~~~~~~~~~g~t~Lh  104 (539)
                      +|+++|++-. ....+|.+.+.
T Consensus        85 lLL~~GAdrt-~~~PdG~~~~e  105 (117)
T KOG4214|consen   85 LLLQNGADRT-IHAPDGTALIE  105 (117)
T ss_pred             HHHHcCcccc-eeCCCchhHHh
Confidence            8877776654 44556655544

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.29  E-value=1.5e-11  Score=93.54  Aligned_cols=96  Identities=16%  Similarity=0.226  Sum_probs=46.4

Q ss_pred             HHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHH
Q 040043           35 LHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDI  114 (539)
Q Consensus        35 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~  114 (539)
                      +..++.+|.++-|+..+..+-+++..  ..|++|||+|+..|+.+++++|+..|++++ .+|..|.|||..|+..||.++
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iGA~i~-~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIGANIQ-DKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhccccC-CccccCCcHHHHHHHHhhHHH
Confidence            34445555555555555544333221  244555555555555555555555555444 344555555555555555555


Q ss_pred             HHHHHhcCCccccccCCCCC
Q 040043          115 VKEILKVRPSFCEQADKNRC  134 (539)
Q Consensus       115 v~~LL~~~~~~~~~~d~~g~  134 (539)
                      ++.||+.+++- .....+|.
T Consensus        83 VklLL~~GAdr-t~~~PdG~  101 (117)
T KOG4214|consen   83 VKLLLQNGADR-TIHAPDGT  101 (117)
T ss_pred             HHHHHHcCccc-ceeCCCch
Confidence            55555544443 33334443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=8.7e-12  Score=123.07  Aligned_cols=119  Identities=18%  Similarity=0.216  Sum_probs=88.9

Q ss_pred             HHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHH
Q 040043           35 LHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDI  114 (539)
Q Consensus        35 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~  114 (539)
                      |.-|+..|.+++|+..+..-.+. ...|.+|.|+||-|+-.||.+||++|++.|.+++ ..|.+|+||||+|+.+++..+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccCCCCchhhhhhhcCchHH
Confidence            45577788888888777655444 5567778888888888888888888888887777 678888888888888888888


Q ss_pred             HHHHHhcCCccccccCCCCChHHhHHH--HcCCHHHHHHHHcC
Q 040043          115 VKEILKVRPSFCEQADKNRCLPLHYAS--RIGNVEITKLLLNS  155 (539)
Q Consensus       115 v~~LL~~~~~~~~~~d~~g~tpLh~A~--~~g~~~~v~~Ll~~  155 (539)
                      ++.|++.++.+....-.++.|+...+-  ..|...+.++|-..
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            888888887776666677777766654  35667777777643

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.26  E-value=1.3e-11  Score=88.30  Aligned_cols=54  Identities=33%  Similarity=0.556  Sum_probs=39.7

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHH
Q 040043           31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLML   85 (539)
Q Consensus        31 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll   85 (539)
                      |.||||.||+.|+.+++++|++.+.++ +.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678888888888888888888888776 455888888888888888888888875

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.26  E-value=4.9e-12  Score=91.04  Aligned_cols=50  Identities=26%  Similarity=0.406  Sum_probs=32.3

Q ss_pred             cccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHH
Q 040043          228 GLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVL  278 (539)
Q Consensus       228 ~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a  278 (539)
                      .+++.+|..|+||||+|+..|+.+++++|+ +.|+|++.+|..|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            578899999999999999999999999999 77999999999999999987

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.21  E-value=8.8e-11  Score=107.95  Aligned_cols=122  Identities=21%  Similarity=0.247  Sum_probs=93.7

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCC
Q 040043           32 ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGK  111 (539)
Q Consensus        32 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~  111 (539)
                      ..||..++..|+.+-...|+..-.++ +.+|..|.|||..|+..|+.++|+.|++.|++++...+..+.||||.|+.+|+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            46788888888888888887764444 56788888888888888888888888888888877777777888888888888


Q ss_pred             HHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcC
Q 040043          112 IDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNS  155 (539)
Q Consensus       112 ~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  155 (539)
                      .++.+.|++.|... ...+.-|+|+-..|+.-|+.++|..+-++
T Consensus        92 ~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   92 QDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             chHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            88888888877766 56677788888888888887777766443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.20  E-value=3.9e-11  Score=85.83  Aligned_cols=54  Identities=46%  Similarity=0.758  Sum_probs=28.9

Q ss_pred             CChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHH
Q 040043          133 RCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI  187 (539)
Q Consensus       133 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll  187 (539)
                      |+||||+|+..|+.+++++|++.|.+++.+ |.+|.||||+|+..|+.++++.|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~-d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQ-DEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B--TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHccCHHHHHHHC
Confidence            456666666666666666666666665555 566666666666666666665553

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.19  E-value=6.6e-11  Score=108.75  Aligned_cols=116  Identities=20%  Similarity=0.167  Sum_probs=104.7

Q ss_pred             eecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHH
Q 040043            3 AATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVK   82 (539)
Q Consensus         3 ~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~   82 (539)
                      .|...|+.+-...|++...+ ++.+|..|.|||..|+..|+.++++.|++.|++++...+..+.||||+|+..|+.++.+
T Consensus        18 e~i~Kndt~~a~~LLs~vr~-vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcr   96 (396)
T KOG1710|consen   18 EAIDKNDTEAALALLSTVRQ-VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCR   96 (396)
T ss_pred             HHHccCcHHHHHHHHHHhhh-hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHH
Confidence            35567888888888887555 88999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 040043           83 LMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK  120 (539)
Q Consensus        83 ~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~  120 (539)
                      +|++.|+... ..+.-|+|+-.+|+.-|+.++|..+-.
T Consensus        97 llldaGa~~~-~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   97 LLLDAGARMY-LVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HHHhccCccc-cccchhhhHHHHHHHhcchHHHHHHhc
Confidence            9999998876 578889999999999999999876643

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.19  E-value=6e-11  Score=117.25  Aligned_cols=119  Identities=22%  Similarity=0.264  Sum_probs=102.6

Q ss_pred             HHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHH
Q 040043           69 FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEI  148 (539)
Q Consensus        69 L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~  148 (539)
                      |.-|+..|.+|+|+..+..-.++. ..+.+|.|+||-|+..||.+||++|++.+.++ +..|.+||||||+|+.++++.+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpS-qpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPS-QPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCC-CCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchHH
Confidence            455888999999999988766665 57889999999999999999999999999998 8899999999999999999999


Q ss_pred             HHHHHcCCCccccccccCCCCHHHHHH--HcCCHHHHHHHHHh
Q 040043          149 TKLLLNSKPDMALQYNNNGYTPLHQAA--INGHVKILEAFIAS  189 (539)
Q Consensus       149 v~~Ll~~~~~~~~~~d~~g~tpLh~Aa--~~g~~~~v~~Ll~~  189 (539)
                      ++.|.+.|+-+....-.++.|+..-+-  +.|..+|.++|...
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            999999999876655677788876553  46788898888643

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.18  E-value=2e-11  Score=87.82  Aligned_cols=56  Identities=29%  Similarity=0.360  Sum_probs=27.0

Q ss_pred             HHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHH
Q 040043           16 IIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLA   72 (539)
Q Consensus        16 Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A   72 (539)
                      ||+.++..++.+|..|+||||+||..|+.+++++|++.+.++ +.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            455555557777788888888888888888888888777666 66777778887776

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.15  E-value=5.9e-11  Score=129.45  Aligned_cols=84  Identities=23%  Similarity=0.282  Sum_probs=53.5

Q ss_pred             ceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHH
Q 040043            2 KAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVV   81 (539)
Q Consensus         2 h~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv   81 (539)
                      |.||..|+.+.|+.|++.+.+ ++.+|..|.||||+||..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++
T Consensus        87 ~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         87 CQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHHHH
Confidence            455666666666666666655 4556666666666666666666666666666655 45566666666666666666666


Q ss_pred             HHHHhC
Q 040043           82 KLMLNQ   87 (539)
Q Consensus        82 ~~Ll~~   87 (539)
                      ++|+++
T Consensus       165 ~~Ll~~  170 (664)
T PTZ00322        165 QLLSRH  170 (664)
T ss_pred             HHHHhC
Confidence            666665

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.09  E-value=4e-10  Score=122.98  Aligned_cols=105  Identities=22%  Similarity=0.296  Sum_probs=85.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHH
Q 040043           68 AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVE  147 (539)
Q Consensus        68 pL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~  147 (539)
                      .|+.|+..|+.++++.|++.+.+++ ..|..|.||||+|+..|+.++++.|++.+++. +..|..|.||||+|+..|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin-~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPN-CRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHH
Confidence            5788888999999999998888876 56888899999999999999999999988877 778888999999999999999


Q ss_pred             HHHHHHcC-------CCccccccccCCCCHHHHHH
Q 040043          148 ITKLLLNS-------KPDMALQYNNNGYTPLHQAA  175 (539)
Q Consensus       148 ~v~~Ll~~-------~~~~~~~~d~~g~tpLh~Aa  175 (539)
                      ++++|+++       +++.... +..|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~-~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPD-SFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCcc-ccCCCCccchhh
Confidence            99999887       6665544 666666655443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.52  E-value=2.9e-05  Score=82.68  Aligned_cols=117  Identities=24%  Similarity=0.230  Sum_probs=95.1

Q ss_pred             eecccCcHHHHHHHHHhCCh---hhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHH
Q 040043            3 AATGFGHIELVTEIIKLCPQ---LVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVN   79 (539)
Q Consensus         3 ~Aa~~g~~e~v~~Ll~~~~~---~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e   79 (539)
                      .|+..|+.-.|+..++....   .++.+|.-|.++||.|+.+.|.++.++|++.+...        ..+|..|+..|..+
T Consensus        31 ~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~~v~  102 (822)
T KOG3609|consen   31 LAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVGSVP  102 (822)
T ss_pred             HHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHHHHH
Confidence            47889999999999986532   47889999999999999999999999999987544        46899999999999


Q ss_pred             HHHHHHhCCccccc---------ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccc
Q 040043           80 VVKLMLNQSWLMEF---------EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCE  127 (539)
Q Consensus        80 iv~~Ll~~~~~~~~---------~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~  127 (539)
                      +|+.++.+......         ..-..+.||+.+|+..+++|+++.|++++..+..
T Consensus       103 ~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  103 LVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            99999987544311         1223456899999999999999999998877643

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.51  E-value=8.2e-08  Score=100.23  Aligned_cols=89  Identities=19%  Similarity=0.252  Sum_probs=57.1

Q ss_pred             hCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCC
Q 040043           19 LCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRD   98 (539)
Q Consensus        19 ~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~   98 (539)
                      .|.++.+..|..|+|+||+|+..|..+++++|+++|.++.......|.||||-|+..|+.|++..|+.+|.... ..|.+
T Consensus        40 ~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~-i~Dke  118 (1267)
T KOG0783|consen   40 SCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLR-IKDKE  118 (1267)
T ss_pred             hhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceE-Eeccc
Confidence            34455566666677777777766666777777766666644444556677777777777777766666665544 46666


Q ss_pred             CCcHHHHHHH
Q 040043           99 ESTPLHVAIS  108 (539)
Q Consensus        99 g~t~Lh~A~~  108 (539)
                      |.+||...+.
T Consensus       119 glsplq~~~r  128 (1267)
T KOG0783|consen  119 GLSPLQFLSR  128 (1267)
T ss_pred             CCCHHHHHhh
Confidence            6666665544

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.49  E-value=5.2e-07  Score=90.45  Aligned_cols=117  Identities=23%  Similarity=0.252  Sum_probs=76.6

Q ss_pred             HHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCc-cccccCCCCChHHhHHHHcCCHHH
Q 040043           70 LLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPS-FCEQADKNRCLPLHYASRIGNVEI  148 (539)
Q Consensus        70 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~-~~~~~d~~g~tpLh~A~~~g~~~~  148 (539)
                      ..|+..++.--++....+|.+.. ..+.+..+.||+|+..|+-+++++||+++|. +.+..|.+|.|+||.|+-.++..+
T Consensus       871 l~av~~~D~~klqE~h~~gg~ll-~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGSLL-IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCceE-eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            34444444433444444444433 4566667777777777777777777777654 445666777777777777777777


Q ss_pred             HHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHH
Q 040043          149 TKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA  188 (539)
Q Consensus       149 v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~  188 (539)
                      .++|.+.|+++... |..|.||-.-|-+.|..++..+|-.
T Consensus       950 c~~lvdagasl~kt-d~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKT-DSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHhcchhheec-ccCCCChHHHHHhcCCchHHHHHhh
Confidence            77777777777665 7777777777777777777665543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.48  E-value=2.7e-07  Score=92.38  Aligned_cols=119  Identities=15%  Similarity=0.144  Sum_probs=93.0

Q ss_pred             HHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCccc-ccccCCCCCcHHHHHHHcCCHH
Q 040043           35 LHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLM-EFEEDRDESTPLHVAISRGKID  113 (539)
Q Consensus        35 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~g~t~Lh~A~~~g~~~  113 (539)
                      +..|+..+++--++.....|..+ -.++.+..+.||+|+..|+.|+|+|++++++.. ....|+.|.|+||.|+..++..
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            45566677665555556666666 457778888889998888889999988887643 2346788889999988888888


Q ss_pred             HHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcC
Q 040043          114 IVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNS  155 (539)
Q Consensus       114 ~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  155 (539)
                      +.++|++.++.+ ...|..|.||-.-|-+.|+.++.-+|-..
T Consensus       949 vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            888888888887 67788899999989888888888887644

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.40  E-value=2.8e-07  Score=96.38  Aligned_cols=95  Identities=22%  Similarity=0.288  Sum_probs=81.4

Q ss_pred             HHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccc
Q 040043           47 SALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFC  126 (539)
Q Consensus        47 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~  126 (539)
                      -.++-..+.+..+++|..|+|+||+|+..+..++++||+++|.++.....+.|.||||.|+..|+.|++..||.++..+ 
T Consensus        34 k~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL-  112 (1267)
T KOG0783|consen   34 KGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL-  112 (1267)
T ss_pred             HHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCce-
Confidence            3444455666778889999999999999999999999999998888666678999999999999999999999998887 


Q ss_pred             cccCCCCChHHhHHHH
Q 040043          127 EQADKNRCLPLHYASR  142 (539)
Q Consensus       127 ~~~d~~g~tpLh~A~~  142 (539)
                      ...|.+|.+||...++
T Consensus       113 ~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  113 RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             EEecccCCCHHHHHhh
Confidence            8889999999998877

>PF13606 Ank_3: Ankyrin repeat

Probab=98.39  E-value=3.6e-07  Score=56.00  Aligned_cols=28  Identities=43%  Similarity=0.487  Sum_probs=20.5

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCccc
Q 040043           30 KLETPLHEACRQGNAEISALLLKTNLFV   57 (539)
Q Consensus        30 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~   57 (539)
                      +|+||||+||+.|+.+++++|++.|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4677777777777777777777777654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.37  E-value=5.7e-07  Score=88.93  Aligned_cols=87  Identities=18%  Similarity=0.274  Sum_probs=65.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHH
Q 040043           34 PLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKID  113 (539)
Q Consensus        34 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~  113 (539)
                      -||-.++.|+.+..-.|+..|++.+..-...|.||||.|++.|+..-+++|+-+|+++. ..|.+|.||+.+|-..||-+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~-a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPG-AQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCC-CCCCCCCcHHHHHHhcCchH
Confidence            47777777777777777777777766666677778888877777777777777777776 57777778887777777777


Q ss_pred             HHHHHHhc
Q 040043          114 IVKEILKV  121 (539)
Q Consensus       114 ~v~~LL~~  121 (539)
                      +.+.|++.
T Consensus       215 laeRl~e~  222 (669)
T KOG0818|consen  215 LAERLVEI  222 (669)
T ss_pred             HHHHHHHH
Confidence            77777654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.36  E-value=4.6e-07  Score=57.16  Aligned_cols=33  Identities=33%  Similarity=0.452  Sum_probs=29.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhccccCcccccc
Q 040043          236 FGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNY  269 (539)
Q Consensus       236 ~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~  269 (539)
                      +|+||||+|+..++.+++++|++ .|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK-HGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH-TTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH-CcCCCCCCCC
Confidence            58999999999999999999995 5999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.34  E-value=4.8e-07  Score=55.44  Aligned_cols=29  Identities=45%  Similarity=0.644  Sum_probs=20.5

Q ss_pred             CCChHHhHHHHcCCHHHHHHHHcCCCccc
Q 040043          132 NRCLPLHYASRIGNVEITKLLLNSKPDMA  160 (539)
Q Consensus       132 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  160 (539)
                      +|+||||+|++.|+.|++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36777777777777777777777776654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.31  E-value=6.2e-07  Score=88.30  Aligned_cols=92  Identities=21%  Similarity=0.238  Sum_probs=63.6

Q ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHH
Q 040043          164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHL  243 (539)
Q Consensus       164 d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~  243 (539)
                      +.++..++.+|++.|.+..++.+.-.+ .+++..|.+.+|+||+|+..|+.+++++|++..  +.+.+.+|++|+|||.-
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g-~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~--kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQG-MDLETKDYDDRTALHVAAAEGHVEVVKFLLNAC--KVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhc-ccccccccccchhheeecccCceeHHHHHHHHH--cCCCChhhccCCCcchH
Confidence            345556677777777777777666544 446777777777777777777777777777753  23466677777777777


Q ss_pred             HHHcCCHHHHHHHhh
Q 040043          244 AILRNNYQLAEYIIK  258 (539)
Q Consensus       244 A~~~~~~~iv~~Ll~  258 (539)
                      |...++.+++++|-+
T Consensus       580 A~~F~h~~v~k~L~~  594 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEE  594 (622)
T ss_pred             hHhcCcHHHHHHHHH
Confidence            777777777777654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.30  E-value=6.6e-07  Score=88.16  Aligned_cols=92  Identities=22%  Similarity=0.194  Sum_probs=80.8

Q ss_pred             cCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHH
Q 040043          198 TTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDV  277 (539)
Q Consensus       198 d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~  277 (539)
                      +.++...+.+|++.|....++-+.-.   +.+++.+|.+.+|+||.||..|+.+++++|++..+++++.+|+-|+||||-
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~---g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQ---GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHh---cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence            34556788999999999988766544   567999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCchhhHHHhh
Q 040043          278 LKESGTKEAFSSELQ  292 (539)
Q Consensus       278 a~~~~~~~~~~~~l~  292 (539)
                      |...++.+.+..+-+
T Consensus       580 A~~F~h~~v~k~L~~  594 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEE  594 (622)
T ss_pred             hHhcCcHHHHHHHHH
Confidence            999998888766544

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.30  E-value=2.4e-06  Score=84.67  Aligned_cols=86  Identities=22%  Similarity=0.295  Sum_probs=74.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHH
Q 040043           68 AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVE  147 (539)
Q Consensus        68 pL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~  147 (539)
                      -||-.++.|+.+..--|+..|++.++...+.|.||||.|+..|+.--++.|+-.|+++ ...|.+|.||+.+|-..||-+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcHHHHHHhcCchH
Confidence            4888899999999888899999988888888999999999999999999888888887 778999999999999999987


Q ss_pred             HHHHHHc
Q 040043          148 ITKLLLN  154 (539)
Q Consensus       148 ~v~~Ll~  154 (539)
                      +.+.|++
T Consensus       215 laeRl~e  221 (669)
T KOG0818|consen  215 LAERLVE  221 (669)
T ss_pred             HHHHHHH
Confidence            7766654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.26  E-value=1.8e-06  Score=86.64  Aligned_cols=90  Identities=30%  Similarity=0.553  Sum_probs=71.7

Q ss_pred             cHHHHHHHcCCHHHHHH-HHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCC
Q 040043          101 TPLHVAISRGKIDIVKE-ILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH  179 (539)
Q Consensus       101 t~Lh~A~~~g~~~~v~~-LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~  179 (539)
                      -|+|.++.....+-... +...-...++..|..|+||||+|+..|+.+.++.|+.+|++.... |++|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~k-N~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIK-NNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcccc-ccccccHHHHHHHcCC
Confidence            35888887776654444 333334456778888999999999999999999999999988876 9999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 040043          180 VKILEAFIASSP  191 (539)
Q Consensus       180 ~~~v~~Ll~~~~  191 (539)
                      .+++..++.+..
T Consensus       101 ~q~i~~vlr~~~  112 (560)
T KOG0522|consen  101 EQIITEVLRHLK  112 (560)
T ss_pred             HHHHHHHHHHhH
Confidence            998888887653

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.24  E-value=1.9e-06  Score=86.51  Aligned_cols=87  Identities=21%  Similarity=0.228  Sum_probs=52.0

Q ss_pred             CceecccCcHHHHHHHHH-hCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHH
Q 040043            1 IKAATGFGHIELVTEIIK-LCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVN   79 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~-~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e   79 (539)
                      ||.++...+.+-....+. .....++.+|..|+||||.|++.|+.+.++.|+..++++ ..+|.+|++|||.|+..|+.+
T Consensus        24 lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   24 LHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             cchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCCHH
Confidence            345555555444444332 222235666666677777777777777777777666665 556666777777777666666


Q ss_pred             HHHHHHhCC
Q 040043           80 VVKLMLNQS   88 (539)
Q Consensus        80 iv~~Ll~~~   88 (539)
                      ++..++.+.
T Consensus       103 ~i~~vlr~~  111 (560)
T KOG0522|consen  103 IITEVLRHL  111 (560)
T ss_pred             HHHHHHHHh
Confidence            666666543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.18  E-value=2.1e-06  Score=54.09  Aligned_cols=28  Identities=39%  Similarity=0.553  Sum_probs=19.5

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCccc
Q 040043           30 KLETPLHEACRQGNAEISALLLKTNLFV   57 (539)
Q Consensus        30 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~   57 (539)
                      +|.||||+|+..|+.+++++|++.|+++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            3667777777777777777777766665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.10  E-value=0.0004  Score=74.26  Aligned_cols=126  Identities=19%  Similarity=0.168  Sum_probs=99.8

Q ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhcCcc---cccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHH
Q 040043           28 NEKLETPLHEACRQGNAEISALLLKTNLF---VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLH  104 (539)
Q Consensus        28 n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~---~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh  104 (539)
                      ...++--...|+..|+...|+..++....   ..+..|.-|+++|++|+.+.+.|+.++|++++...        ..+|.
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL   93 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALL   93 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHH
Confidence            34455667889999999999999986543   23668899999999999999999999999886432        45889


Q ss_pred             HHHHcCCHHHHHHHHhcCCccc---------cccCCCCChHHhHHHHcCCHHHHHHHHcCCCcccc
Q 040043          105 VAISRGKIDIVKEILKVRPSFC---------EQADKNRCLPLHYASRIGNVEITKLLLNSKPDMAL  161 (539)
Q Consensus       105 ~A~~~g~~~~v~~LL~~~~~~~---------~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~  161 (539)
                      +|+..|..+.++.++.+.....         ...-..+-|||.+||..+++|+++.|+++|+++..
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            9999999999999998643320         11223467999999999999999999999887654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.09  E-value=5e-06  Score=79.88  Aligned_cols=69  Identities=29%  Similarity=0.394  Sum_probs=58.6

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcH
Q 040043           32 ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTP  102 (539)
Q Consensus        32 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~  102 (539)
                      .--|.+||+.|+.+.|++|++.|.++ +.+|....+||++|+..||.++|++|+++|+.-. ....+|.-.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~-rdtf~G~RC  105 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS-RDTFDGDRC  105 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCccc-ccccCcchh
Confidence            33589999999999999999999888 7789999999999999999999999999998765 233444443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.00  E-value=1.3e-05  Score=81.12  Aligned_cols=93  Identities=25%  Similarity=0.195  Sum_probs=76.2

Q ss_pred             HHHHHHhCChhHHHHHHhhccccccc-ccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCC
Q 040043          205 FHLALRFGKYNAFIFLAESFDFTGLL-HQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGT  283 (539)
Q Consensus       205 Lh~Av~~~~~~~v~~Ll~~~~~~~~~-~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~  283 (539)
                      |.-|+.......+.+|+.++...... ..-+.+|.|+||+|+..|+..+.++|+ -+|+|+..+|..|+|||.+|.+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLi-Wyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLI-WYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHH-HhCccceecccCCchhhhhHhhccc
Confidence            44566666667777777775544433 344677899999999999999999999 6699999999999999999999999


Q ss_pred             chhhHHHhhhccCCC
Q 040043          284 KEAFSSELQSVEEPN  298 (539)
Q Consensus       284 ~~~~~~~l~~~~~~~  298 (539)
                      .+.+..+++.+..++
T Consensus       707 qec~d~llq~gcp~e  721 (749)
T KOG0705|consen  707 QECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHHcCCCcc
Confidence            999999999876543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.96  E-value=2.3e-05  Score=79.38  Aligned_cols=88  Identities=20%  Similarity=0.250  Sum_probs=66.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCcc---ccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcC
Q 040043          102 PLHVAISRGKIDIVKEILKVRPSF---CEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAING  178 (539)
Q Consensus       102 ~Lh~A~~~g~~~~v~~LL~~~~~~---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g  178 (539)
                      -|..|+...+...+..||.++...   ....+.+|+|+||+||+.|++.+.++|+-+|.|.... |..|+|+|.+|-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~r-da~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMAR-DAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceec-ccCCchhhhhHhhcc
Confidence            455566666666777777665432   1234556788888888888888888888888888776 888888888888888


Q ss_pred             CHHHHHHHHHhC
Q 040043          179 HVKILEAFIASS  190 (539)
Q Consensus       179 ~~~~v~~Ll~~~  190 (539)
                      ..+++..|++++
T Consensus       706 sqec~d~llq~g  717 (749)
T KOG0705|consen  706 SQECIDVLLQYG  717 (749)
T ss_pred             cHHHHHHHHHcC
Confidence            888888888765

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.72  E-value=2.8e-05  Score=74.88  Aligned_cols=70  Identities=20%  Similarity=0.206  Sum_probs=59.8

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLA   72 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A   72 (539)
                      |..|++.|+.|.|++|++.|.+ ++..|....+||.+|+..||.++|++|+++|+-- ..-..+|.-.++-|
T Consensus        40 lceacR~GD~d~v~~LVetgvn-VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVN-VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRCHYGA  109 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCC-cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchhhhhh
Confidence            4679999999999999998888 8999999999999999999999999999999754 33455676665544

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.69  E-value=4e-05  Score=83.85  Aligned_cols=85  Identities=22%  Similarity=0.283  Sum_probs=76.0

Q ss_pred             CCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHH
Q 040043          199 TDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVL  278 (539)
Q Consensus       199 ~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a  278 (539)
                      ..|.++||.|+..+...++++|++.   ++.+|..|..|+||||.+...|+...+..|++ .|+++++.+.+|++|+++|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~---ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQN---GADVNALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhc---CCcchhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCccCcchhhHH
Confidence            4689999999999999999999998   55599999999999999999999999999995 6999999999999999999


Q ss_pred             HHcCCchhh
Q 040043          279 KESGTKEAF  287 (539)
Q Consensus       279 ~~~~~~~~~  287 (539)
                      .+..+.+..
T Consensus       730 ~~~~~~d~~  738 (785)
T KOG0521|consen  730 MEAANADIV  738 (785)
T ss_pred             hhhccccHH
Confidence            887544443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.68  E-value=8.4e-05  Score=65.11  Aligned_cols=67  Identities=19%  Similarity=0.151  Sum_probs=59.2

Q ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcc
Q 040043           24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWL   90 (539)
Q Consensus        24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~   90 (539)
                      ++.+|..|+|||+.|++.|+.+.+.+|+++|.......|..+.+++.+|-+.|+.+.++.|.+...+
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            6789999999999999999999999999999666688899999999999999999999998876443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.66  E-value=4.5e-05  Score=82.96  Aligned_cols=126  Identities=21%  Similarity=0.221  Sum_probs=65.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcC-CCccccccccCCCCHHHHH
Q 040043           96 DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNS-KPDMALQYNNNGYTPLHQA  174 (539)
Q Consensus        96 ~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A  174 (539)
                      ...|.+.+|+++..+..-.++.+++.........|.+|.-.+|+++ .++++..-++... |..+.. +|..|+||||+|
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i-~D~~G~tpL~wA  648 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDI-RDRNGWTPLHWA  648 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeeccccccc-ccCCCCcccchH
Confidence            3445566666666666666666666422222444555555555533 3333433333332 333333 366666666666


Q ss_pred             HHcCCHHHHHHHHHhCCCc-----cccccCCCCcHHHHHHHhCChhHHHHHHhh
Q 040043          175 AINGHVKILEAFIASSPTS-----FNCLTTDGDTVFHLALRFGKYNAFIFLAES  223 (539)
Q Consensus       175 a~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~  223 (539)
                      +..|+..++..|+..+...     ....+..|.|+-.+|-.+|+..+-.+|-+.
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            6666666666665433321     122233566666666666666666666553

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.63  E-value=4.9e-05  Score=83.20  Aligned_cols=83  Identities=28%  Similarity=0.344  Sum_probs=50.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHc
Q 040043           98 DESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAIN  177 (539)
Q Consensus        98 ~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~  177 (539)
                      .|.++||.|+..|...+.+.|++.+.++ +..|..|++|||.+...|+...+..|+++|++.... +.+|..|+++|...
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~-~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGADPNAF-DPDGKLPLDIAMEA  732 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcccccccccc-CccCcchhhHHhhh
Confidence            3456666666666666666666666653 666666666666666666666666666666666554 66666666666555


Q ss_pred             CCHHH
Q 040043          178 GHVKI  182 (539)
Q Consensus       178 g~~~~  182 (539)
                      .+.++
T Consensus       733 ~~~d~  737 (785)
T KOG0521|consen  733 ANADI  737 (785)
T ss_pred             ccccH
Confidence            44333

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.60  E-value=7.2e-05  Score=81.46  Aligned_cols=129  Identities=16%  Similarity=0.067  Sum_probs=90.8

Q ss_pred             ccCCCCChHHhHHHHcCCHHHHHHHHcC-CCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHH
Q 040043          128 QADKNRCLPLHYASRIGNVEITKLLLNS-KPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFH  206 (539)
Q Consensus       128 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh  206 (539)
                      .....|.+.+|+++..++..+++.+++. +..... .|.+|.-.+|+ |..++.+..-+++......++.+|.+|+||||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~e-ld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLE-LDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchh-hcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            3455678888888888888888888875 333333 37777777887 44555566556666666778888888888888


Q ss_pred             HHHHhCChhHHHHHHhhccccc---ccccccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043          207 LALRFGKYNAFIFLAESFDFTG---LLHQQDQFGNTVLHLAILRNNYQLAEYIIK  258 (539)
Q Consensus       207 ~Av~~~~~~~v~~Ll~~~~~~~---~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  258 (539)
                      +|..+|+..++..|.+......   +.+..+-.|-|+-.+|...|+..+..+|-+
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            8888888888888877654433   233444568888888888887777666654

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.36  E-value=0.00033  Score=61.47  Aligned_cols=67  Identities=16%  Similarity=0.261  Sum_probs=57.7

Q ss_pred             cccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhc
Q 040043          228 GLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSV  294 (539)
Q Consensus       228 ~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~  294 (539)
                      ..+|..|..|+|||+.|+..|+.+.+.||+.+.-+.+...|..|.+++.+|.+.|..+.+..+.+..
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            3588899999999999999999999999997755899999999999999999999888887776653

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.90  E-value=0.0062  Score=61.32  Aligned_cols=67  Identities=15%  Similarity=0.203  Sum_probs=51.2

Q ss_pred             ChhHHHHHHhhccccc---ccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHH
Q 040043          213 KYNAFIFLAESFDFTG---LLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKE  280 (539)
Q Consensus       213 ~~~~v~~Ll~~~~~~~---~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~  280 (539)
                      -...+++|.+....+.   -....|..--|+||+|+..|..++|.+||++ |+|+..+|..|+||.+++..
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh-cCCchhcccCCCCccccccc
Confidence            3555666666533322   1233445568999999999999999999977 69999999999999999864

>smart00248 ANK ankyrin repeats

Probab=96.16  E-value=0.0079  Score=35.25  Aligned_cols=26  Identities=42%  Similarity=0.502  Sum_probs=18.1

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCcc
Q 040043           31 LETPLHEACRQGNAEISALLLKTNLF   56 (539)
Q Consensus        31 g~TpLh~Aa~~g~~~iv~~Ll~~~~~   56 (539)
                      |.||+|.|+..|+.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            56777777777777777777766653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.60  E-value=0.017  Score=33.70  Aligned_cols=25  Identities=44%  Similarity=0.664  Sum_probs=12.3

Q ss_pred             CChHHhHHHHcCCHHHHHHHHcCCC
Q 040043          133 RCLPLHYASRIGNVEITKLLLNSKP  157 (539)
Q Consensus       133 g~tpLh~A~~~g~~~~v~~Ll~~~~  157 (539)
                      |.||+|+|+..++.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3445555555555555555554443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.73  E-value=0.32  Score=43.12  Aligned_cols=137  Identities=19%  Similarity=0.175  Sum_probs=87.7

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCH
Q 040043           33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKI  112 (539)
Q Consensus        33 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~  112 (539)
                      -.|.-|+..+-+.+++..-+....-    -...++.+-+||+..+.|+|+|+-+.-..      .+-.+.+..|....+.
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~kDl  117 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhccch
Confidence            4567788888888888776543211    23556788889999999999998543221      1234567788887776


Q ss_pred             HHHH---H-HHhcCCccccccCCC--CChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHH
Q 040043          113 DIVK---E-ILKVRPSFCEQADKN--RCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF  186 (539)
Q Consensus       113 ~~v~---~-LL~~~~~~~~~~d~~--g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~L  186 (539)
                      ++..   . +.++...- ...|..  -..-|..|+..|-.+.+...+++|.+.+.       +.|..|+..++..++..+
T Consensus       118 sLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~-------~vls~Av~ynhRkIL~yf  189 (192)
T PF03158_consen  118 SLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI-------IVLSQAVKYNHRKILDYF  189 (192)
T ss_pred             hHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH-------HHHHHHHHhhHHHHHHHh
Confidence            6521   1 11211110 011110  11346778888888888888888877653       578888888888888777


Q ss_pred             H
Q 040043          187 I  187 (539)
Q Consensus       187 l  187 (539)
                      +
T Consensus       190 i  190 (192)
T PF03158_consen  190 I  190 (192)
T ss_pred             h
Confidence            6

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.80  E-value=0.099  Score=53.00  Aligned_cols=42  Identities=29%  Similarity=0.371  Sum_probs=24.5

Q ss_pred             CChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHH
Q 040043          133 RCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAA  175 (539)
Q Consensus       133 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa  175 (539)
                      ..|+||+|+..|..+++.+||+.|+|+... |..|.||..+++
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Leeg~Dp~~k-d~~Grtpy~ls~  471 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEEGCDPSTK-DGAGRTPYSLSA  471 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHhcCCchhc-ccCCCCcccccc
Confidence            455666666666666666666666555544 556666655554

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.41  E-value=0.62  Score=41.35  Aligned_cols=138  Identities=14%  Similarity=0.058  Sum_probs=89.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCH
Q 040043           67 SAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV  146 (539)
Q Consensus        67 tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~  146 (539)
                      -.|.-|+..+...+++..-+.....    -...++.+-.||+..+.|+++++-+.-      .-.+-.+-...|....+.
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL------~i~~~~~iFdIA~~~kDl  117 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNL------HIYNPEDIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhcc------CCCCchhhhhhhhhccch
Confidence            3567788999998888776543211    134567889999999999999995421      122233566778888777


Q ss_pred             HHHH----HHHcCCCccccccccC--CCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHH
Q 040043          147 EITK----LLLNSKPDMALQYNNN--GYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL  220 (539)
Q Consensus       147 ~~v~----~Ll~~~~~~~~~~d~~--g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~L  220 (539)
                      ++..    ++.++..+.... |..  -..-|..|+..|-...+.+.++.++..       ..++|..|+.+++..++.++
T Consensus       118 sLyslGY~l~~~~~~~~~~~-d~~~ll~~hl~~a~~kgll~F~letlkygg~~-------~~~vls~Av~ynhRkIL~yf  189 (192)
T PF03158_consen  118 SLYSLGYKLLFNRMMSEHNE-DPTSLLTQHLEKAAAKGLLPFVLETLKYGGNV-------DIIVLSQAVKYNHRKILDYF  189 (192)
T ss_pred             hHHHHHHHHHHhhccccccc-CHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcc-------cHHHHHHHHHhhHHHHHHHh
Confidence            6532    333332111000 000  013477889999999998888887542       12788889999888888776


Q ss_pred             Hh
Q 040043          221 AE  222 (539)
Q Consensus       221 l~  222 (539)
                      +.
T Consensus       190 i~  191 (192)
T PF03158_consen  190 IR  191 (192)
T ss_pred             hc
Confidence            53

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=90.78  E-value=1.8  Score=39.78  Aligned_cols=117  Identities=15%  Similarity=0.126  Sum_probs=63.0

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccc--cccCCCCCcHHHHHHHc-
Q 040043           33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME--FEEDRDESTPLHVAISR-  109 (539)
Q Consensus        33 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~--~~~~~~g~t~Lh~A~~~-  109 (539)
                      -.|-.|+..-+.+-+.-++....+.        .+++.+|+.++..+++.+|+.+-.-..  ...-..+.--+.++.+. 
T Consensus       155 isledAV~AsN~~~i~~~VtdKkdA--------~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h  226 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKKDA--------HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEH  226 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchHHH--------HHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhc
Confidence            3466777777777777666544322        367888888888888888887532111  00011111123333322 


Q ss_pred             -CCHHHHHHHHhcCCcccc---ccCCCCChHHhHHHHcCCHHHHHHHHcCCC
Q 040043          110 -GKIDIVKEILKVRPSFCE---QADKNRCLPLHYASRIGNVEITKLLLNSKP  157 (539)
Q Consensus       110 -g~~~~v~~LL~~~~~~~~---~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~  157 (539)
                       .+..++++.+.+|-...+   ..-.+|.|.|.-|...++.+++..||++|+
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence             234555555555432222   223445666666666666666666666655

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.00  E-value=0.56  Score=35.66  Aligned_cols=48  Identities=21%  Similarity=0.200  Sum_probs=34.7

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCC
Q 040043           33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQS   88 (539)
Q Consensus        33 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~   88 (539)
                      .-+..|+.+|+.|+++.+++.+...        ...+..|+...+.+++++|+++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHhc
Confidence            4577888888888888887654211        35678888888888888887763

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=89.07  E-value=8.9  Score=38.09  Aligned_cols=88  Identities=11%  Similarity=0.123  Sum_probs=39.6

Q ss_pred             cCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCH----HHHHHHhhcc----ccCcccccc
Q 040043          198 TTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNY----QLAEYIIKKT----KVDKNCRNY  269 (539)
Q Consensus       198 d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~----~iv~~Ll~~~----~~~~~~~n~  269 (539)
                      |..|...+..+.+.+..+..+.+++.....-.--..++.|...+..+...+..    .+++.++...    ....=+.|.
T Consensus       198 d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~  277 (322)
T cd07920         198 DQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQ  277 (322)
T ss_pred             CCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCC
Confidence            45555555555555554444444433221111123456666666655555532    2333333111    111123556


Q ss_pred             CCCCHHHHHHHcCCch
Q 040043          270 TNQTALDVLKESGTKE  285 (539)
Q Consensus       270 ~g~t~l~~a~~~~~~~  285 (539)
                      .|.-.+.-+.......
T Consensus       278 ~Gn~Viq~~l~~~~~~  293 (322)
T cd07920         278 YGNYVIQTALDVAKEE  293 (322)
T ss_pred             cccHHHHHHHHhCCHH
Confidence            6666666655555533

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=87.78  E-value=5.8  Score=39.46  Aligned_cols=51  Identities=20%  Similarity=0.208  Sum_probs=27.5

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHhhcc--ccCccccccCCCCHHHHHHHcCC
Q 040043          233 QDQFGNTVLHLAILRNNYQLAEYIIKKT--KVDKNCRNYTNQTALDVLKESGT  283 (539)
Q Consensus       233 ~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~--~~~~~~~n~~g~t~l~~a~~~~~  283 (539)
                      .|..||..+..+...+..+..+.+++..  ..-.-..+..|...++-+...+.
T Consensus       197 ~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~  249 (322)
T cd07920         197 QDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHAS  249 (322)
T ss_pred             cCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCC
Confidence            4667777777777766544333333221  11122455666666666655554

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=86.02  E-value=3.7  Score=37.74  Aligned_cols=116  Identities=18%  Similarity=0.249  Sum_probs=76.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhccccc--ccccccCCCCcHHHHHHHc
Q 040043          170 PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTG--LLHQQDQFGNTVLHLAILR  247 (539)
Q Consensus       170 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~--~~~~~d~~G~T~Lh~A~~~  247 (539)
                      .|.-|+...+.+-+..++....        .-.+++.+++.++..+++.+|+.......  ....  ..+.--+.++...
T Consensus       156 sledAV~AsN~~~i~~~VtdKk--------dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~--~~~~ydieY~LS~  225 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKK--------DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM--EKELYDIEYLLSE  225 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchH--------HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhc--CcchhhHHHHHhh
Confidence            4566777777766665553322        23466777787888888888887654432  1111  1122234444433


Q ss_pred             --CCHHHHHHHhhccccCccc---cccCCCCHHHHHHHcCCchhhHHHhhhcc
Q 040043          248 --NNYQLAEYIIKKTKVDKNC---RNYTNQTALDVLKESGTKEAFSSELQSVE  295 (539)
Q Consensus       248 --~~~~iv~~Ll~~~~~~~~~---~n~~g~t~l~~a~~~~~~~~~~~~l~~~~  295 (539)
                        .+..++++.+++.-+++|.   +-+.|.|-||-|...++.+++..+|+.++
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence              3677888888887788885   45779999999999999999988888765

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=83.03  E-value=2  Score=32.58  Aligned_cols=47  Identities=15%  Similarity=0.183  Sum_probs=30.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 040043           67 SAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKV  121 (539)
Q Consensus        67 tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~  121 (539)
                      ..+..|+..|+.|+++.+++.+...        ...+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            4566777777777777776544111        3457777777777777777765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	539
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-17
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-11
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-15
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-14
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		9e-07
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-13
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-04
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-13
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		8e-13
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-09
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-08
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-12
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		9e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		6e-12
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-06
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-11
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-06
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-11
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-06
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		6e-09
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-11
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		6e-05
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-11
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		8e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-10
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-10
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-06
1uoh_A	226	Human Gankyrin Length = 226		3e-10
1uoh_A	226	Human Gankyrin Length = 226		2e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-10
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		7e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-10
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-09
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-06
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-09
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		9e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-09
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-09
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-08
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		6e-09
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-06
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		9e-09
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-08
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-08
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-08
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-08
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-08
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-08
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-07
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-07
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		9e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		9e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		9e-07
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		1e-06
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		3e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		4e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		4e-06
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-06
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		7e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		6e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-04
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		9e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		4e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		7e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-04
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		2e-04
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		3e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-04
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-04
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		3e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		4e-04
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		4e-04
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		4e-04
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		6e-04
3so8_A	162	Crystal Structure Of Ankra Length = 162		7e-04
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		7e-04
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		7e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 135/304 (44%), Gaps = 49/304 (16%)
Query: 1   IKAATGFGHIELVTEIIK--LCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVA 58
           +  A+  GH+ +V  +++    P +    N K+ETPLH A R G+ E++  LL+    V 
Sbjct: 18  LHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAKV- 73
Query: 59  TLLNQERQSAFLLACRRGHVNVVKLMLN-------------------------QSWLMEF 93
               ++ Q+    A R GH N+VKL+L                          ++ L   
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 133
Query: 94  EEDRDES-------TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV 146
           E++  ++       TPLHVA   GK+  V E+L  R +    A KN   PLH A    N+
Sbjct: 134 EKEASQACMTKKGFTPLHVAAKYGKVR-VAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
Query: 147 EITKLLLNSKPDMALQYNN--NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTV 204
           +I KLLL   P     ++   NGYTPLH AA    V++  + +     S N  +  G T 
Sbjct: 193 DIVKLLL---PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVTP 248
Query: 205 FHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK-TKVD 263
            HLA + G +   + L  S    G L   ++ G T LHL     +  +A+ +IK    VD
Sbjct: 249 LHLAAQEG-HAEMVALLLSKQANGNL--GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Query: 264 KNCR 267
              R
Sbjct: 306 ATTR 309

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 84/193 (43%), Gaps = 41/193 (21%)
Query: 101 TPLHVAISRGKIDIVKEILK-------------------VRPSFCEQAD----------- 130
           TPLHVA   G + IVK +L+                    R    E A            
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 131 --KNRCLPLHYASRIGNVEITKLLL--NSKPDMALQYNNNGYTPLHQAAINGHVKILEAF 186
             K+   PLH A+RIG+  + KLLL  N+ P++A      G+TPLH AA  GHV+ + A 
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA---TTAGHTPLHIAAREGHVETVLAL 132
Query: 187 IASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAIL 246
           +     S  C+T  G T  H+A ++GK      L E            + G T LH+A+ 
Sbjct: 133 LEKE-ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN---AAGKNGLTPLHVAVH 188
Query: 247 RNNYQLAEYIIKK 259
            NN  + + ++ +
Sbjct: 189 HNNLDIVKLLLPR 201

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 71  LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD 130
           LA R GH+ VVKL+L     +  + D++  TPLH+A   G +++VK +L+       + D
Sbjct: 8   LAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-D 65
Query: 131 KNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASS 190
           KN   PLH A+R G++E+ KLLL +  D+  + + NG TPLH AA NGH+++++  + + 
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG 124

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
           TPLH+A   G +++VK +L+       + DKN   PLH A+R G++E+ KLLL +  D+ 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220
            + + NG TPLH AA NGH+++++  + +     N    +G T  HLA R G       L
Sbjct: 63  AK-DKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 221 AESFDF 226
            E+  +
Sbjct: 121 LEAGAY 126

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFD 225
           NG TPLH AA NGH+++++  + +     N    +G T  HLA R G       L E+  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57
Query: 226 FTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
               ++ +D+ G T LHLA  RN +     ++ +   D N ++   +T L +   +G  E
Sbjct: 58  -GADVNAKDKNGRTPLHLAA-RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115
Query: 286 AFSSELQS 293
                L++
Sbjct: 116 VVKLLLEA 123

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 99/196 (50%), Gaps = 5/196 (2%)
Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
           +PLH A   G+ +I  +L++    + T  ++++++  + A    H+  VK ++    L++
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDT-CSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 93  FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
             +D + ST LH+A  +G  ++V+ +L          D     P+ +A+   +V++ KLL
Sbjct: 72  -PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 153 LNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG 212
           L+   D+ ++ N      LH AA +G V I E  +A+     + +   GD+  H+A R  
Sbjct: 131 LSKGSDINIRDNEENIC-LHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDSPLHIAAREN 188
Query: 213 KYNAFI-FLAESFDFT 227
           +Y+  + FL+   D T
Sbjct: 189 RYDCVVLFLSRDSDVT 204

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 9/189 (4%)
Query: 91  MEFE-EDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEIT 149
           M F+ E +++ +PLH A   G +DI   +++   +    ++  R  PL  A+   ++E  
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR-TPLMEAAENNHLEAV 60
Query: 150 KLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLAL 209
           K L+ +   +    +  G T LH AA  GH ++++  +++     NC    G T    A 
Sbjct: 61  KYLIKAGA-LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 210 RFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRN 268
            +   +   + L++  D    ++ +D   N  LH A       +AE I+   K D +  N
Sbjct: 120 EYKHVDLVKLLLSKGSD----INIRDNEENICLHWAAFSGCVDIAE-ILLAAKCDLHAVN 174
Query: 269 YTNQTALDV 277
               + L +
Sbjct: 175 IHGDSPLHI 183

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 11/180 (6%)
Query: 131 KNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASS 190
           +N+  PLH A+  G+V+I  +L+ +  ++    + +  TPL +AA N H++ ++  I + 
Sbjct: 9   QNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 191 PTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNY 250
               +    +G T  HLA + G Y    +L  +      ++ QD  G T +  A    + 
Sbjct: 68  AL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTPMIWATEYKHV 124
Query: 251 QLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE------AFSSELQSVEEPNGSPKHL 304
            L + ++ K   D N R+      L     SG  +      A   +L +V     SP H+
Sbjct: 125 DLVKLLLSKGS-DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
           A   G+ D V+ IL    +     DK+   PLH A+R G++EI ++LL +  D+  + + 
Sbjct: 9   AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DK 66
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESF 224
           +GYTPLH AA  GH++I+E  + +     N    DG T  HLA R G      + L    
Sbjct: 67  DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
           D    ++ QD+FG T   LAI   N  +AE + K
Sbjct: 126 D----VNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+  + + +GYTPLH AA  GH++I+E  + +     N    
Sbjct: 9   AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDK 66
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
           DG T  HLA R G      + L    D    ++ +D+ G T LHLA    + ++ E ++ 
Sbjct: 67  DGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLL- 121
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
           K   D N ++   +T  D+  ++G ++
Sbjct: 122 KAGADVNAQDKFGKTPFDLAIDNGNED 148

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 8/152 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
           A   G+ D V+ IL    +     DK+   PLH A+R G++EI ++LL +  D+  + + 
Sbjct: 21  AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DK 78
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESF 224
           +GYTPLH AA  GH++I+E  + +     N    DG T  HLA R G      + L    
Sbjct: 79  DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI 256
           D    ++ QD+FG T   ++I   N  LAE +
Sbjct: 138 D----VNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+  + + +GYTPLH AA  GH++I+E  + +     N    
Sbjct: 21  AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDK 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
           DG T  HLA R G      + L    D    ++ +D+ G T LHLA    + ++ E ++ 
Sbjct: 79  DGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLL- 133
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
           K   D N ++   +TA D+  ++G ++
Sbjct: 134 KAGADVNAQDKFGKTAFDISIDNGNED 160

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
           A   G+ D V+ IL    +     DK+   PLH A+R G++EI ++LL +  D+  + + 
Sbjct: 9   AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DK 66
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESF 224
           +GYTPLH AA  GH++I+E  + +     N    DG T  HLA R G      + L    
Sbjct: 67  DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
           D    ++ QD+FG T   LAI   +  +AE + K
Sbjct: 126 D----VNAQDKFGKTPFDLAIREGHEDIAEVLQK 155

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+  + + +GYTPLH AA  GH++I+E  + +     N    
Sbjct: 9   AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDK 66
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
           DG T  HLA R G      + L    D    ++ +D+ G T LHLA    + ++ E ++ 
Sbjct: 67  DGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLL- 121
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
           K   D N ++   +T  D+    G ++
Sbjct: 122 KAGADVNAQDKFGKTPFDLAIREGHED 148

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 4/144 (2%)
Query: 69  FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ 128
            L A R G  + V++++     +    D D  TPLH+A S G ++IV+ +LK   +    
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-ATDNDGYTPLHLAASNGHLEIVEVLLK-NGADVNA 75
Query: 129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188
           +D     PLH A+  G++EI ++LL    D+   Y+N+G+TPLH AA  GH++I+E  + 
Sbjct: 76  SDLTGITPLHLAAATGHLEIVEVLLKHGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Query: 189 SSPTSFNCLTTDGDTVFHLALRFG 212
                 N     G T F +++  G
Sbjct: 135 HG-ADVNAQDKFGKTAFDISIDNG 157

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 8/152 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
           A   G+ D V+ IL    +     D +   PLH A+  G++EI ++LL +  D+    + 
Sbjct: 21  AARAGQDDEVR-ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS-DL 78
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESF 224
            G TPLH AA  GH++I+E  +       N    DG T  HLA ++G      + L    
Sbjct: 79  TGITPLHLAAATGHLEIVEVLLKHG-ADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI 256
           D    ++ QD+FG T   ++I   N  LAE +
Sbjct: 138 D----VNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+    +N+GYTPLH AA NGH++I+E  + +     N    
Sbjct: 21  AARAGQDDEVRILMANGADVNAT-DNDGYTPLHLAASNGHLEIVEVLLKNG-ADVNASDL 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
            G T  HLA   G      + L    D    ++  D  G+T LHLA    + ++ E ++K
Sbjct: 79  TGITPLHLAAATGHLEIVEVLLKHGAD----VNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
               D N ++   +TA D+  ++G ++
Sbjct: 135 H-GADVNAQDKFGKTAFDISIDNGNED 160

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 48/207 (23%)
Query: 57  VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDES--TPLHVAISRGKIDI 114
           +AT  +Q+ ++A   AC  GH  +V+ +L     +    D+D++  +PLH+A S G+ +I
Sbjct: 32  LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN---DKDDAGWSPLHIAASAGRDEI 88
Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL--NSKPDMALQYNNNGYTPLH 172
           VK +L V+ +     ++N C PLHYA+     EI  +LL   + PD    Y+    T +H
Sbjct: 89  VKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD---ATAMH 144
Query: 173 QAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQ 232
           +AA  G++K++   +                       F K +  I              
Sbjct: 145 RAAAKGNLKMVHILL-----------------------FYKASTNI-------------- 167
Query: 233 QDQFGNTVLHLAILRNNYQLAEYIIKK 259
           QD  GNT LHLA      + A++++ +
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQ 194

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 18/172 (10%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQY 163
           GK+D +KE +    S   + D++    LH+A   G+ EI + LL      N K D     
Sbjct: 17  GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA---- 72
Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES 223
              G++PLH AA  G  +I++A +       N +  +G T  H A    ++   + L E 
Sbjct: 73  ---GWSPLHIAASAGRDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 224 FDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
                    +D +  T +H A  + N ++  +I+   K   N ++    T L
Sbjct: 129 GANPD---AKDHYDATAMHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPL 176

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 8/154 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
           A   G+ D V+ IL    +    AD     PLH A+  G++EI ++LL    D+    + 
Sbjct: 21  AARAGQDDEVR-ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS-DV 78
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESF 224
            GYTPLH AA  GH++I+E  + +     N + +DG T  HLA ++G      + L    
Sbjct: 79  FGYTPLHLAAYWGHLEIVEVLLKNG-ADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
           D    ++ QD+FG T   ++I   N  LAE + K
Sbjct: 138 D----VNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+    +N G TPLH AA +GH++I+E  +       +    
Sbjct: 21  AARAGQDDEVRILMANGADVNAA-DNTGTTPLHLAAYSGHLEIVEVLLKHG-ADVDASDV 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
            G T  HLA  +G      + L    D   +    D  G T LHLA      ++ E ++K
Sbjct: 79  FGYTPLHLAAYWGHLEIVEVLLKNGADVNAM----DSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
               D N ++   +TA D+  ++G ++
Sbjct: 135 H-GADVNAQDKFGKTAFDISIDNGNED 160

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 48/207 (23%)
Query: 57  VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDES--TPLHVAISRGKIDI 114
           +AT  +Q+ ++A   AC  GH  +V+ +L     +    D+D++  +PLH+A S G  +I
Sbjct: 32  LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN---DKDDAGWSPLHIAASAGXDEI 88
Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL--NSKPDMALQYNNNGYTPLH 172
           VK +L V+ +     ++N C PLHYA+     EI  +LL   + PD    Y+    T +H
Sbjct: 89  VKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD---ATAMH 144
Query: 173 QAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQ 232
           +AA  G++K++   +                       F K +  I              
Sbjct: 145 RAAAKGNLKMVHILL-----------------------FYKASTNI-------------- 167
Query: 233 QDQFGNTVLHLAILRNNYQLAEYIIKK 259
           QD  GNT LHLA      + A++++ +
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQ 194

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 18/172 (10%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQY 163
           GK+D +KE +    S   + D++    LH+A   G+ EI + LL      N K D     
Sbjct: 17  GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA---- 72
Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES 223
              G++PLH AA  G  +I++A +       N +  +G T  H A    ++   + L E 
Sbjct: 73  ---GWSPLHIAASAGXDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 224 FDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
                    +D +  T +H A  + N ++  +I+   K   N ++    T L
Sbjct: 129 GANPD---AKDHYDATAMHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPL 176

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 40/190 (21%)
Query: 69  FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ 128
            L A R G  + V++++     +  E+D  + TPLH+A  +G ++IV+ +LK   +    
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDDSGK-TPLHLAAIKGHLEIVEVLLK-HGADVNA 75
Query: 129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188
           ADK    PLH A+  G++EI ++LL +  D+    +  G+TPLH AA  GH++I+E  + 
Sbjct: 76  ADKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT-DTYGFTPLHLAADAGHLEIVEVLL- 133
Query: 189 SSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRN 248
                                   KY A +            + QD+FG T   ++I   
Sbjct: 134 ------------------------KYGADV------------NAQDKFGKTAFDISIDNG 157
Query: 249 NYQLAEYIIK 258
           N  LAE + K
Sbjct: 158 NEDLAEILQK 167

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+  + +++G TPLH AAI GH++I+E  +       N    
Sbjct: 21  AARAGQDDEVRILMANGADVNAE-DDSGKTPLHLAAIKGHLEIVEVLLKHG-ADVNAADK 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
            GDT  HLA  +G      + L    D    ++  D +G T LHLA    + ++ E ++ 
Sbjct: 79  MGDTPLHLAALYGHLEIVEVLLKNGAD----VNATDTYGFTPLHLAADAGHLEIVEVLL- 133
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
           K   D N ++   +TA D+  ++G ++
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNED 160

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
           TPLH+A   G +++VK +L+       + DKN   PLH A+R G++E+ KLLL +  D+ 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIASS 190
            + + NG TPLH AA NGH+++++  + + 
Sbjct: 63  AK-DKNGRTPLHLAARNGHLEVVKLLLEAG 91

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFD 225
           NG TPLH AA NGH+++++  + +     N    +G T  HLA R G       L E+  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57
Query: 226 FTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
               ++ +D+ G T LHLA    + ++ + +++
Sbjct: 58  -GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 41/159 (25%)
Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDM- 159
           TPLH+ ++ G ++I++ +LK        +DK+   PLH A+  G++EI ++LL    D+ 
Sbjct: 49  TPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 160 ALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIF 219
           A+ Y   GYTPLH AA +GH++I+E  +                         KY A + 
Sbjct: 108 AMDYQ--GYTPLHLAAEDGHLEIVEVLL-------------------------KYGADV- 139
Query: 220 LAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
                      + QD+FG T   ++I   N  LAE + K
Sbjct: 140 -----------NAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNN---GYTPLHQAAINGHVKILEAFIASSPTSFNC 196
           A+R G  +  ++L+ +  D+    N N   G TPLH    NGH++I+E  +  +    N 
Sbjct: 21  AARAGQDDEVRILMANGADV----NANDWFGITPLHLVVNNGHLEIIEVLLKYA-ADVNA 75
Query: 197 LTTDGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEY 255
               G T  HLA   G      + L    D   + +Q    G T LHLA    + ++ E 
Sbjct: 76  SDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQ----GYTPLHLAAEDGHLEIVEV 131
Query: 256 IIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
           ++ K   D N ++   +TA D+  ++G ++
Sbjct: 132 LL-KYGADVNAQDKFGKTAFDISIDNGNED 160

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
           PLH A++ G++EI ++LL    D+   ++N G TPLH AA NGH++I+E  +       N
Sbjct: 50  PLHLAAKTGHLEIVEVLLKYGADVN-AWDNYGATPLHLAADNGHLEIVEVLLKHG-ADVN 107
Query: 196 CLTTDGDTVFHLALRFGKYNAFIFLAES-FDFTGLLHQQDQFGNTVLHLAILRNNYQLAE 254
               +G T  HLA     Y+  + + E    +   ++ QD+FG T   ++I   N  LAE
Sbjct: 108 AKDYEGFTPLHLA----AYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 255 YIIK 258
            + K
Sbjct: 164 ILQK 167

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 136 PLHYASRIGNVEITKLLLNSKPDM-ALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSF 194
           PLH A+R+G++EI ++LL +  D+ AL +  +G TPLH AA  GH++I+E  +       
Sbjct: 50  PLHLAARVGHLEIVEVLLKNGADVNALDF--SGSTPLHLAAKRGHLEIVEVLLKYG-ADV 106
Query: 195 NCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAE 254
           N   T G T  HLA   G       L     +   ++ QD+FG T   ++I   N  LAE
Sbjct: 107 NADDTIGSTPLHLAADTGHLEIVEVL---LKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 255 YI 256
            +
Sbjct: 164 IL 165

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 48/207 (23%)
Query: 57  VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDES--TPLHVAISRGKIDI 114
           +AT  +Q+ ++A   AC  GH  +V+ +L    L     D+D++  +PLH+A S G+ +I
Sbjct: 33  LATRTDQDSRTALHWACSAGHTEIVEFLLQ---LGVPVNDKDDAGWSPLHIAASAGRDEI 89
Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL--NSKPDMALQYNNNGYTPLH 172
           VK +L  + +     ++N C PLHYA+     EI  +LL   + PD    Y     T +H
Sbjct: 90  VKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE---ATAMH 145
Query: 173 QAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQ 232
           +AA  G++K++                      H+ L + K +  I              
Sbjct: 146 RAAAKGNLKMI----------------------HILLYY-KASTNI-------------- 168
Query: 233 QDQFGNTVLHLAILRNNYQLAEYIIKK 259
           QD  GNT LHLA      + A+ ++ +
Sbjct: 169 QDTEGNTPLHLACDEERVEEAKLLVSQ 195

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 18/172 (10%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQY 163
           GK++ +KE +    S   + D++    LH+A   G+ EI + LL      N K D     
Sbjct: 18  GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA---- 73
Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES 223
              G++PLH AA  G  +I++A +       N +  +G T  H A    ++   + L E 
Sbjct: 74  ---GWSPLHIAASAGRDEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 129
Query: 224 FDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
                    +D +  T +H A  + N ++  +I+   K   N ++    T L
Sbjct: 130 GANP---DAKDHYEATAMHRAAAKGNLKMI-HILLYYKASTNIQDTEGNTPL 177

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 48/207 (23%)
Query: 57  VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDES--TPLHVAISRGKIDI 114
           +AT  +Q+ ++A   AC  GH  +V+ +L    L     D+D++  +PLH+A S G+ +I
Sbjct: 32  LATRTDQDSRTALHWACSAGHTEIVEFLLQ---LGVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL--NSKPDMALQYNNNGYTPLH 172
           VK +L  + +     ++N C PLHYA+     EI  +LL   + PD    Y     T +H
Sbjct: 89  VKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE---ATAMH 144
Query: 173 QAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQ 232
           +AA  G++K++                      H+ L + K +  I              
Sbjct: 145 RAAAKGNLKMI----------------------HILLYY-KASTNI-------------- 167
Query: 233 QDQFGNTVLHLAILRNNYQLAEYIIKK 259
           QD  GNT LHLA      + A+ ++ +
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKLLVSQ 194

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 18/172 (10%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQY 163
           GK++ +KE +    S   + D++    LH+A   G+ EI + LL      N K D     
Sbjct: 17  GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA---- 72
Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES 223
              G++PLH AA  G  +I++A +       N +  +G T  H A    ++   + L E 
Sbjct: 73  ---GWSPLHIAASAGRDEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 224 FDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
                    +D +  T +H A  + N ++  +I+   K   N ++    T L
Sbjct: 129 GANP---DAKDHYEATAMHRAAAKGNLKMI-HILLYYKASTNIQDTEGNTPL 176

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
           A   G+ D V+ IL    +     D +   PLH A+  G++EI ++LL    D+    + 
Sbjct: 21  AARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDI 78
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESF 224
            G TPLH AA+ GH++I+E  +       N + T GDT  HLA   G      + L    
Sbjct: 79  XGSTPLHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
           D    ++ QD+FG T   ++I   N  LAE + K
Sbjct: 138 D----VNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+    + +G TPLH AA  GH++I+E  +       N +  
Sbjct: 21  AARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHG-ADVNAIDI 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
            G T  HLA   G      + L    D   +    D +G+T LHLA +  + ++ E ++K
Sbjct: 79  XGSTPLHLAALIGHLEIVEVLLKHGADVNAV----DTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
               D N ++   +TA D+  ++G ++
Sbjct: 135 H-GADVNAQDKFGKTAFDISIDNGNED 160

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
           A   G+ D V+ IL    +     D +   PLH A+  G++EI ++LL    D+    + 
Sbjct: 21  AARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDI 78
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESF 224
            G TPLH AA+ GH++I+E  +       N + T GDT  HLA   G      + L    
Sbjct: 79  MGSTPLHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
           D    ++ QD+FG T   ++I   N  LAE + K
Sbjct: 138 D----VNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+    + +G TPLH AA  GH++I+E  +       N +  
Sbjct: 21  AARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHG-ADVNAIDI 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
            G T  HLA   G      + L    D   +    D +G+T LHLA +  + ++ E ++K
Sbjct: 79  MGSTPLHLAALIGHLEIVEVLLKHGADVNAV----DTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
               D N ++   +TA D+  ++G ++
Sbjct: 135 H-GADVNAQDKFGKTAFDISIDNGNED 160

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 130 DKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189
           D     PLH A+ IG+ EI ++LL    D+  + + +G+TPLH AA NGH++I+E  +  
Sbjct: 44  DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR-DTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 190 SPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRN 248
                N     G T  HLA   G      + L    D    ++ QD+FG T   ++I   
Sbjct: 103 G-ADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDNG 157
Query: 249 NYQLAEYIIK 258
           N  LAE + K
Sbjct: 158 NEDLAEILQK 167

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 96  DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNS 155
           D +  TPLH+A + G+++IV+ +LK   +    +D     PLH A+  G++EI ++LL  
Sbjct: 36  DDNGLTPLHLAAANGQLEIVEVLLK-NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 156 KPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
             D+   Y+  G+TPLH AA++G ++I+E  +       N     G T F +++  G+
Sbjct: 95  GADVN-AYDRAGWTPLHLAALSGQLEIVEVLLKHG-ADVNAQDALGLTAFDISINQGQ 150

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+  G  +  ++L+ +  D+    ++NG TPLH AA NG ++I+E  + +     N   +
Sbjct: 13  AAAAGQDDEVRILMANGADVNAT-DDNGLTPLHLAAANGQLEIVEVLLKNG-ADVNASDS 70
Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGL-LHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
            G T  HLA     Y+  + + E     G  ++  D+ G T LHLA L    ++ E ++K
Sbjct: 71  AGITPLHLA----AYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
               D N ++    TA D+    G ++
Sbjct: 127 H-GADVNAQDALGLTAFDISINQGQED 152

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 39/158 (24%)
Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
           TPLH+A   G ++IV+ +LK   +     D     PLH A+  G++EI ++LL +  D+ 
Sbjct: 49  TPLHLAAYWGHLEIVEVLLK-NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220
            + ++NG TPLH AA  GH++I+E  +                         KY A +  
Sbjct: 108 AK-DDNGITPLHLAANRGHLEIVEVLL-------------------------KYGADV-- 139
Query: 221 AESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
                     + QD+FG T   ++I   N  LAE + K
Sbjct: 140 ----------NAQDKFGKTAFDISINNGNEDLAEILQK 167

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+    +  G+TPLH AA  GH++I+E  + +     N   T
Sbjct: 21  AARAGRDDEVRILMANGADVNAA-DVVGWTPLHLAAYWGHLEIVEVLLKNG-ADVNAYDT 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
            G T  HLA  FG      + L    D    ++ +D  G T LHLA  R + ++ E ++ 
Sbjct: 79  LGSTPLHLAAHFGHLEIVEVLLKNGAD----VNAKDDNGITPLHLAANRGHLEIVEVLL- 133
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
           K   D N ++   +TA D+   +G ++
Sbjct: 134 KYGADVNAQDKFGKTAFDISINNGNED 160

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
           PLH A+  G++EI ++LL +  D+  + ++ G TPLH AA  GH++I+E  + +     N
Sbjct: 50  PLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLHLAARRGHLEIVEVLLKNG-ADVN 107
Query: 196 CLTTDGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAE 254
              + G T  HLA + G      + L    D    ++ QD+FG T   ++I   N  LAE
Sbjct: 108 ASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD----VNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 255 YIIK 258
            + K
Sbjct: 164 ILQK 167

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
           A   G+ D V+ IL    +     D +   PLH A+  G++EI ++LL +  D+    ++
Sbjct: 21  AARAGRDDEVR-ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDH 78
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESF 224
            G TPL  AA+ GH++I+E  + +     N    +G T  HLA  FG      + L    
Sbjct: 79  AGMTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
           D    ++ QD+FG T   ++I   N  LAE + K
Sbjct: 138 D----VNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+  + + +G+TPLH AA NGH++I+E  + +     N +  
Sbjct: 21  AARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNG-ADVNAVDH 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
            G T   LA  FG      + L    D    ++  D  G+T LHLA +  + ++ E ++ 
Sbjct: 79  AGMTPLRLAALFGHLEIVEVLLKNGAD----VNANDMEGHTPLHLAAMFGHLEIVEVLL- 133
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
           K   D N ++   +TA D+  ++G ++
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNED 160

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 49/168 (29%)
Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
           TPLH+A   G ++IV+ +LK   +  + AD     PLH A+  G++EI ++LL    D+ 
Sbjct: 49  TPLHLAAVSGHLEIVEVLLK-HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVN 107
Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220
             ++  G TPLH AA  GH++I+E  +                         KY A +  
Sbjct: 108 -AFDMTGSTPLHLAADEGHLEIVEVLL-------------------------KYGADV-- 139
Query: 221 AESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRN 268
                     + QD+FG T   ++I   N  LA          K+CRN
Sbjct: 140 ----------NAQDKFGKTAFDISIDNGNEDLA----------KSCRN 167

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 24/159 (15%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+    +N G TPLH AA++GH++I+E  +       +    
Sbjct: 21  AARAGQDDEVRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKHG-ADVDAADV 78
Query: 200 DGDTVFHLALRFG---------KYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNY 250
            G T  HLA   G         KY A +    +FD T         G+T LHLA    + 
Sbjct: 79  YGFTPLHLAAMTGHLEIVEVLLKYGADV---NAFDMT---------GSTPLHLAADEGHL 126
Query: 251 QLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSS 289
           ++ E ++ K   D N ++   +TA D+  ++G ++   S
Sbjct: 127 EIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLAKS 164

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
           PLH A+  G++EI ++LL +  D+    ++ G TPLH AA  GH++++E  + +     N
Sbjct: 50  PLHLAAYFGHLEIVEVLLKNGADVNAD-DSLGVTPLHLAADRGHLEVVEVLLKNG-ADVN 107
Query: 196 CLTTDGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAE 254
               +G T  HLA   G      + L    D    ++ QD+FG T   ++I   N  LAE
Sbjct: 108 ANDHNGFTPLHLAANIGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 255 YIIK 258
            + K
Sbjct: 164 ILQK 167

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 69  FLLACRRGHVNVVK-LMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCE 127
            L A R G  + V+ LM N +    +  D    TPLH+A + G ++IV E+L    +   
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAY--DHYGRTPLHMAAAVGHLEIV-EVLLRNGADVN 62
Query: 128 QADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
             D N   PLH A+ +G++EI ++LL    D+  + +  G TPL+ AA  GH++I+E  +
Sbjct: 63  AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAK-DATGITPLYLAAYWGHLEIVEVLL 121
Query: 188 ASSPTSFNCLTTDGDTVFHLALRFG 212
                  N     G T F +++  G
Sbjct: 122 KHG-ADVNAQDKFGKTAFDISIDIG 145

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
           PLH A+ +G++EI ++LL +  D+    + NG TPLH AA  GH++I+E  +       N
Sbjct: 38  PLHMAAAVGHLEIVEVLLRNGADVN-AVDTNGTTPLHLAASLGHLEIVEVLLKYG-ADVN 95
Query: 196 CLTTDGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAE 254
                G T  +LA  +G      + L    D    ++ QD+FG T   ++I   N  LAE
Sbjct: 96  AKDATGITPLYLAAYWGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDIGNEDLAE 151
Query: 255 YI 256
            +
Sbjct: 152 IL 153

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 6/177 (3%)
Query: 102 PLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMAL 161
           PLH A    +   V+E+L  +PS   Q D++  +PLH++      EIT  LL+   ++ L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 162 QY--NNNGYTPLHQAAINGHVKILEAFIASS-PTSFNCLTTDGDTVFHLALRFGKYNAFI 218
               +++G+TP H A   G+++++++          N +T  G T  HLA+    +    
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 219 FLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
           FL E+      +  +D+F    LH A    + +L E +    K   N ++    T L
Sbjct: 125 FLIEN---GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 6/177 (3%)
Query: 102 PLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMAL 161
           PLH A    +   V+E+L  +PS   Q D++  +PLH++      EIT  LL+   ++ L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 162 Q--YNNNGYTPLHQAAINGHVKILEAFIASS-PTSFNCLTTDGDTVFHLALRFGKYNAFI 218
               +++G+TP H A   G+++++++          N +T  G T  HLA+    +    
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 219 FLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
           FL E+      +  +D+F    LH A    + +L E +    K   N ++    T L
Sbjct: 125 FLIEN---GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 6/177 (3%)
Query: 102 PLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMAL 161
           PLH A    +   V+E+L  +PS   Q D++  +PLH++      EIT  LL+   ++ L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 162 QY--NNNGYTPLHQAAINGHVKILEAFIASS-PTSFNCLTTDGDTVFHLALRFGKYNAFI 218
               +++G+TP H A   G+++++++          N +T  G T  HLA+    +    
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 219 FLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
           FL E+      +  +D+F    LH A    + +L E +    K   N ++    T L
Sbjct: 125 FLIEN---GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 72  ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADK 131
           A + GH  +VKL++++   +   +D D  TPLH A   G  +IVK +L  + +     D 
Sbjct: 44  AAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEIVK-LLISKGADVNAKDS 101
Query: 132 NRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH---VKILE 184
           +   PLHYA++ G+ EI KLL++   D+    +++G TPL  A  +G+   VK+LE
Sbjct: 102 DGRTPLHYAAKEGHKEIVKLLISKGADVNTS-DSDGRTPLDLAREHGNEEIVKLLE 156

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 8/155 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
           A   G  D VK++++   +    +D +   PLHYA++ G+ EI KLL++   D+  + ++
Sbjct: 11  AAENGNKDRVKDLIE-NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DS 68
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG-KYNAFIFLAESF 224
           +G TPLH AA  GH +I++  I S     N   +DG T  H A + G K    + +++  
Sbjct: 69  DGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
           D    ++  D  G T L LA    N ++ + + K+
Sbjct: 128 D----VNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 7/153 (4%)
Query: 35  LHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFE 94
           L EA   GN +    LL+    V    + + ++   LA   GH  VVKL+L+Q       
Sbjct: 8   LIEAAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQG-ADPNA 65
Query: 95  EDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLN 154
           +D D  TPLH+A   G  ++VK +L  + +     D +   PLH A+  G+ E+ KLLL+
Sbjct: 66  KDSDGKTPLHLAAENGHKEVVKLLLS-QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 155 SKPDMALQYNNNGYTPLHQAAINGH---VKILE 184
              D     +++G TPL  A  +G+   VK+LE
Sbjct: 125 QGADPNTS-DSDGRTPLDLAREHGNEEVVKLLE 156

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+  GN +  K LL +  D+    +++G TPLH AA NGH ++++  ++      N   +
Sbjct: 11  AAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGADP-NAKDS 68
Query: 200 DGDTVFHLALRFG-KYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
           DG T  HLA   G K    + L++  D     + +D  G T LHLA    + ++ + ++ 
Sbjct: 69  DGKTPLHLAAENGHKEVVKLLLSQGAD----PNAKDSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
           +   D N  +   +T LD+ +E G +E
Sbjct: 125 Q-GADPNTSDSDGRTPLDLAREHGNEE 150

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 12/157 (7%)
Query: 106 AISRGKIDIVKEILK--VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQY 163
           A   G  D VK++L+    P+    +D +   PLHYA+  G+ EI KLLL+   D   + 
Sbjct: 11  AAENGNKDRVKDLLENGADPN---ASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK- 66
Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG-KYNAFIFLAE 222
           +++G TPLH AA NGH +I++  ++      N   +DG T  H A   G K    + L++
Sbjct: 67  DSDGRTPLHYAAENGHKEIVKLLLSKGADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 223 SFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
             D     +  D  G T L LA    N ++ + + K+
Sbjct: 126 GAD----PNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 8/155 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
           A   G  D VK++++   +    +D +   PLH+A+  G+ E+ KLL++   D+  + ++
Sbjct: 11  AAENGNKDRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DS 68
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG-KYNAFIFLAESF 224
           +G TPLH AA NGH ++++  I S     N   +DG T  H A   G K    + +++  
Sbjct: 69  DGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
           D    ++  D  G T L LA    N ++ + + K+
Sbjct: 128 D----VNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 130 DKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189
           D++   PLH A+++G++EI ++LL    D+  + +N G TPLH AAI GH++I+E  +  
Sbjct: 44  DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE-DNFGITPLHLAAIRGHLEIVEVLLKH 102
Query: 190 SPTSFNCLTTDGDTVFHLALRFG 212
                N     G T F +++  G
Sbjct: 103 G-ADVNAQDKFGKTAFDISIDNG 124

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 173 QAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQ 232
           +A  +  V+IL A    +    N L  DG T  HLA + G       L     +   ++ 
Sbjct: 23  RAGQDDEVRILMA----NGADVNALDEDGLTPLHLAAQLGHLEIVEVL---LKYGADVNA 75
Query: 233 QDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
           +D FG T LHLA +R + ++ E ++K    D N ++   +TA D+  ++G ++
Sbjct: 76  EDNFGITPLHLAAIRGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNED 127

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+  + +  G TPLH AA+N H++I+E  + +     N +  
Sbjct: 21  AARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNG-ADVNAIDA 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
            G+T  HL   +G      + L    D    ++ QD+FG T   ++I   N  LAE + K
Sbjct: 79  IGETPLHLVAMYGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 47  SALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVA 106
           SAL L      A L  + ++   L A R G+   +  +L    +     D  +STPLH+A
Sbjct: 6   SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA 65
Query: 107 ISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKP---DMALQY 163
               ++ IV+ +L+   +     DK   +PLH A   G+ E+T+LLL        M L  
Sbjct: 66  AGYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124
Query: 164 NNNGYTPLHQAAINGHVKILEAFIA--SSPTSFNC 196
               +TPLH+AA    V++    ++  + PT  NC
Sbjct: 125 ----FTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
           A+    +D+V+++L+   +   Q ++    PLH A ++   +I +LLL    D  L+   
Sbjct: 12  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KK 70
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220
           NG TP   AAI G VK+L+ F++       C    G T F  A  +GK  A  FL
Sbjct: 71  NGATPFLLAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFL 124

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
           A+    +D+V+++L+   +   Q ++    PLH A ++   +I +LLL    D  L+   
Sbjct: 32  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KK 90
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220
           NG TP   AAI G VK+L+ F++       C    G T F  A  +GK  A  FL
Sbjct: 91  NGATPFILAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFL 144

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 7/115 (6%)
Query: 97  RDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL--N 154
           +D S+PLHVA   G+ D++  +LK   +     + ++ +PLH A + G+ ++ K LL  N
Sbjct: 84  QDGSSPLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLLDSN 142
Query: 155 SKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLAL 209
           +KP+   + + +G TPL  A   GH +++ A +     S N     G+T  H A+
Sbjct: 143 AKPN---KKDLSGNTPLIYACSGGHHELV-ALLLQHGASINASNNKGNTALHEAV 193

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 39  CRQGNAEISALLLKTNLFVATLLNQERQSAFL---LACRRGHVNVVKLMLNQSWLMEFEE 95
           CR+GNA    L L         LNQ     F     ACR G   VV++++ +   +    
Sbjct: 13  CREGNAVAVRLWLDN---TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM- 68
Query: 96  DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
           +R + TPLH+A S G  DIV+++L+ +       +++  +PLHYA   G  ++ + L+
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLV 125

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDG 201
           R GN    +L L++  +   Q +++G++PLH A   G   ++E  I       N +    
Sbjct: 14  REGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGD 72
Query: 202 DTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTK 261
           DT  HLA   G  +    + +   +   ++  ++ GN  LH A      Q+AE ++    
Sbjct: 73  DTPLHLAASHGHRD---IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Query: 262 VDKNCRNY 269
           +   C  Y
Sbjct: 130 LVSICNKY 137

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+    +  G TPLH AA   H++I+E  +       N    
Sbjct: 21  AARAGQDDEVRILMANGADVNAN-DRKGNTPLHLAADYDHLEIVEVLLKHG-ADVNAHDN 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
           DG T  HLA  FG      + L    D    ++ QD+FG T   ++I   N  LAE + K
Sbjct: 79  DGSTPLHLAALFGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
           PLH A++ G+ E  K LL+   D+  + + +G TPLH AA NGH +I++  +A      N
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVN 69
Query: 196 CLTTDGDTVFHLALRFGKY 214
             + DG+T  HLA + G +
Sbjct: 70  ARSKDGNTPEHLAKKNGHH 88

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAE 222
           + +G TPLH AA NGH + ++  + S     N  + DG+T  HLA + G      + LA+
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 223 SFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNY 269
             D    ++ + + GNT  HLA    ++++ + +  K   D N R++
Sbjct: 65  GAD----VNARSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSW 106

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+    ++ G TPLH AA  GH++I+E  +       N   +
Sbjct: 21  ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDS 78
Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
            G T  HLA   G       L E   +   ++ QD+FG T   ++I   N  LAE + K
Sbjct: 79  WGRTPLHLAATVGHLEIVEVLLE---YGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 39  CRQGNAEISALLLKTNLFVATLLNQERQSAFL---LACRRGHVNVVKLMLNQSWLMEFEE 95
           CR+GNA    L L         LNQ     F     ACR G   VV++++ +   +    
Sbjct: 8   CREGNAVAVRLWLDNT---ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM- 63
Query: 96  DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNS 155
           +R + TPLH+A S G  DIV+++L+ +       +++  +PLHYA   G  ++ + L+ +
Sbjct: 64  NRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVAN 122
Query: 156 KPDMALQYNNNGYTPLHQA 174
              +++  N  G  P+ +A
Sbjct: 123 GALVSI-CNKYGEMPVDKA 140

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDG 201
           R GN    +L L++  +   Q +++G++PLH A   G   ++E  I       N +    
Sbjct: 9   REGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGD 67
Query: 202 DTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTK 261
           DT  HLA   G  +    + +   +   ++  ++ GN  LH A      Q+AE ++    
Sbjct: 68  DTPLHLAASHGHRD---IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Query: 262 VDKNCRNY 269
           +   C  Y
Sbjct: 125 LVSICNKY 132

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+    ++ G TPLH AA  GH++I+E  +       N    
Sbjct: 21  ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNARDI 78
Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
            G T  HLA   G       L E   +   ++ QD+FG T   ++I   N  LAE + K
Sbjct: 79  WGRTPLHLAATVGHLEIVEVLLE---YGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+    ++ G TPLH AA  GH++I+E  +       N    
Sbjct: 21  ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDI 78
Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
            G T  HLA   G       L E   +   ++ QD+FG T   ++I   N  LAE + K
Sbjct: 79  WGRTPLHLAATVGHLEIVEVLLE---YGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 24  VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
           VA   E ++ PLHEA ++GN       L   + V  L ++   +A   AC  GH ++V+ 
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEX 124
Query: 84  MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEIL 119
           +  Q  +   ++++   T LH A  +G  DIV+ +L
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A+R G  +  ++L+ +  D+  + +  G TPL+ A  +GH++I+E  + +     N +  
Sbjct: 21  AARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDA 78
Query: 200 DGDTVFHLALRFGKYN-AFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
            G T  HLA   G    A + L    D    ++ QD+FG T   ++I   N  LAE + K
Sbjct: 79  IGFTPLHLAAFIGHLEIAEVLLKHGAD----VNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 15/179 (8%)
Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQA 174
           VKEIL+      ++ D     PL+ A    ++EI K L++   D+ LQ N+   +P   A
Sbjct: 21  VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYA 79
Query: 175 AINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL----AESFDFTGLL 230
              G  +IL   +  +    N     G      A   G  +    L     E  DF    
Sbjct: 80  GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF---- 135
Query: 231 HQQDQFGNTVLHLAI-LRNNYQLAEYIIK---KTKVDKNCRNYTNQTALDVLKESGTKE 285
             Q+ FG T L  A+ LR   QL + I+K   +   D++ ++ + +TA+D   + G  E
Sbjct: 136 --QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTE 192

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 113/265 (42%), Gaps = 36/265 (13%)
Query: 98  DESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKP 157
           D+      A S G  + V  +L+ R +    A+ +    LH A    NV++ K L+ +  
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97
Query: 158 DMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLAL-------- 209
           ++  Q +N G+ PLH AA  G++ I E ++ S       + ++GDT   +A         
Sbjct: 98  NIN-QPDNEGWIPLHAAASCGYLDIAE-YLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155
Query: 210 -----RFG-------KYNAFIFLAESFDFTGLLHQQD----QFGNTVLHLAILRNNYQLA 253
                R G       K    I L ++  +    H  D    + G T LH+A  +   ++ 
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL 215
Query: 254 EYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSPKHLQQYKDLSKR 313
           + +I + + D N ++Y   T L      G +EA    ++++ +     K  Q   D++  
Sbjct: 216 KLLI-QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274
Query: 314 QI----KELSKR----YKSRRDKKN 330
            I    +EL K+    +  +R+KK+
Sbjct: 275 DILGYLEELQKKQNLLHSEKREKKS 299

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYT 169
           G  +I + +L +R +  +  D+     +H A+R G ++  + LL  + D+ ++ +N G  
Sbjct: 48  GNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIE-DNEGNL 105
Query: 170 PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
           PLH AA  GH++++E  +  + ++       GDT   LA  +G+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYT 169
           G  +I + +L +R +  +  D+     +H A+R G ++  + LL ++ D+ ++ +N G  
Sbjct: 48  GNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIE-DNEGNL 105
Query: 170 PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
           PLH AA  GH++++E  +  + ++       GDT   LA  +G+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 93  FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
           F   R E T LH+A  +G I  V+ +L+   S     D     PLH A   G++++ +LL
Sbjct: 5   FTNHRGE-TLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 153 LNSKPDMALQYNNNGY---TPLHQAAINGHVKILEAFIA 188
           L  K   AL  N  GY   +PLH AA NGHV I++  ++
Sbjct: 63  LQHK---AL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYT 169
           G  +I + +L +R +  +  D+     +H A+R G ++  + LL  + D+ ++ +N G  
Sbjct: 48  GNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNL 105
Query: 170 PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
           PLH AA  GH++++E  +  + ++       GDT   LA  +G+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYT 169
           G  +I + +L +R +  +  D+     +H A+R G ++  + LL  + D+ ++ +N G  
Sbjct: 48  GNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNL 105
Query: 170 PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
           PLH AA  GH++++E  +  + ++       GDT   LA  +G+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 19/169 (11%)
Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
           +PL +A     +  + ++LK       Q        LH A+   N+E   +L+ + P++ 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 161 LQYNNN----GYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHL----ALRFG 212
            +   +    G T LH A IN +V ++ A +A    S +   T   +VFH      + +G
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARG-ASVSARATG--SVFHYRPHNLIYYG 121
Query: 213 KYN-AFIFLAESFDFTGLLHQ-------QDQFGNTVLHLAILRNNYQLA 253
           ++  +F     S +   LL +       QD  GNTVLH+ IL+ N   A
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFA 170

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYT 169
           G  +I + +L +R +  +  D+     +H A+R G ++  + LL  + D+ ++ +N G  
Sbjct: 48  GNPEIARRLL-LRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNL 105
Query: 170 PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
           PLH AA  GH++++E  +  + ++       GDT   LA  +G+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNN---GYTPLHQAAINGHVKILEAFIASSPTSFNC 196
           A+R G  +  ++L  +  D+    N N   G+TPLH AA+ GH++I+E  + +     N 
Sbjct: 21  AARAGQDDEVRILTANGADV----NANDYWGHTPLHLAAMLGHLEIVEVLLKNG-ADVNA 75
Query: 197 LTTDGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEY 255
               G T  HLA          + L    D    ++ QD+FG T   ++I   N  LAE 
Sbjct: 76  TGNTGRTPLHLAAWADHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 256 IIK 258
           + K
Sbjct: 132 LQK 134

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 3/144 (2%)
Query: 28  NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
           N + +  L EA + G+ E    L          +   + +    A     V+VV+ +L  
Sbjct: 7   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 88  SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVE 147
              +   +D+    PLH A S G  + V E+L    +    AD  +  PLH A+  G  E
Sbjct: 67  GADVH-AKDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 124
Query: 148 ITKLLLNSKPDMALQYNNNGYTPL 171
           I KLLL    D   + N +G TPL
Sbjct: 125 ICKLLLQHGAD-PTKKNRDGNTPL 147

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 3/144 (2%)
Query: 28  NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
           N + +  L EA + G+ E    L          +   + +    A     V+VV+ +L  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 88  SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVE 147
              +   +D+    PLH A S G  + V E+L    +    AD  +  PLH A+  G  E
Sbjct: 65  GADVH-AKDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122
Query: 148 ITKLLLNSKPDMALQYNNNGYTPL 171
           I KLLL    D   + N +G TPL
Sbjct: 123 ICKLLLQHGAD-PTKKNRDGNTPL 145

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 3/144 (2%)
Query: 28  NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
           N + +  L EA + G+ E    L          +   + +    A     V+VV+ +L  
Sbjct: 9   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 68
Query: 88  SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVE 147
              +   +D+    PLH A S G  + V E+L    +    AD  +  PLH A+  G  E
Sbjct: 69  GADVH-AKDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 126
Query: 148 ITKLLLNSKPDMALQYNNNGYTPL 171
           I KLLL    D   + N +G TPL
Sbjct: 127 ICKLLLQHGAD-PTKKNRDGNTPL 149

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
           TPLH A RQG+  +   L+K      +L++ E  S   LA + GH ++V  ++ +   ++
Sbjct: 78  TPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 93  FEEDRDESTPLHVAISRG-KIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKL 151
              D++  TPL  A  R   +D  + +L    S       ++   LH+A   GN  +  L
Sbjct: 137 M-MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195
Query: 152 LLNSKPDMALQ 162
           LL +  ++  Q
Sbjct: 196 LLEAGANVDAQ 206

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Query: 106 AISRGKIDIVKEILK---VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQ 162
           A +RG +  V+ +L    V P    +  K     + + S    +E+ K    + P++   
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQ--GASPNVQ-- 70
Query: 163 YNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAE 222
            + +G +P+H AA  G +  L+  +       N L + G    HLA+R G  +   FLA 
Sbjct: 71  -DASGTSPVHDAARTGFLDTLKVLVEHG-ADVNALDSTGSLPIHLAIREGHSSVVSFLAP 128
Query: 223 SFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI 256
             D    LH +D  G T L LA  R    L + +
Sbjct: 129 ESD----LHHRDASGLTPLELARQRGAQNLMDIL 158

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
           +P+HEA   G+ ++S   L +  +   ++  +  S    AC  GH++ VK++L     + 
Sbjct: 61  SPMHEAAIHGH-QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 93  FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
                D  TPL  A   G  D V  +L+   S   Q + +   P+H A+R G+VE    L
Sbjct: 120 GVT-ADWHTPLFNACVSGSWDCVNLLLQHGASV--QPESDLASPIHEAARRGHVECVNSL 176
Query: 153 LNSKPDMALQYNNNGYTPLHQAAIN 177
           +    ++  + ++ G TPL+ A  N
Sbjct: 177 IAYGGNIDHKISHLG-TPLYLACEN 200

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Query: 106 AISRGKIDIVKEILK---VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQ 162
           A +RG +  V+ +L    V P    +  K     + + S    +E+ K    + P++   
Sbjct: 17  AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQ--GASPNVQ-- 72
Query: 163 YNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAE 222
            + +G +P+H AA  G +  L+  +       N L + G    HLA+R G  +   FLA 
Sbjct: 73  -DASGTSPVHDAARTGFLDTLKVLVEHG-ADVNALDSTGSLPIHLAIREGHSSVVSFLAP 130
Query: 223 SFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI 256
             D    LH +D  G T L LA  R    L + +
Sbjct: 131 ESD----LHHRDASGLTPLELARQRGAQNLMDIL 160

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
           +P+HEA   G+ ++S   L +  +   ++  +  S    AC  GH++ VK++L     + 
Sbjct: 5   SPMHEAAIHGH-QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 93  FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
                D  TPL  A   G  D V  +L+   S   Q + +   P+H A+R G+VE    L
Sbjct: 64  -GVTADWHTPLFNACVSGSWDCVNLLLQHGASV--QPESDLASPIHEAARRGHVECVNSL 120
Query: 153 LNSKPDMALQYNNNGYTPLHQAAIN 177
           +    ++  + ++ G TPL+ A  N
Sbjct: 121 IAYGGNIDHKISHLG-TPLYLACEN 144

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 28  NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
           +E+  TPL  A   G   +   LL+ N     LL + R+SA  LAC +G+ ++VK++L+ 
Sbjct: 31  DEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 89
Query: 88  SWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
              +  E D +  TPL  A+    +  VK +L+
Sbjct: 90  GVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLE 121

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 28  NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
           +E+  TPL  A   G   +   LL+ N     LL + R+SA  LAC +G+ ++VK++L+ 
Sbjct: 33  DEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 91
Query: 88  SWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
              +  E D +  TPL  A+    +  VK +L+
Sbjct: 92  GVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLE 123

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 28  NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
           +E+  TPL  A   G   +   LL+ N     LL + R+SA  LAC +G+ ++VK++L+ 
Sbjct: 49  DEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 107
Query: 88  SWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
              +  E D +  TPL  A+    +  VK +L+
Sbjct: 108 GVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLE 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	539
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-39
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-39
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-35
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-37
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-35
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-34
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-34
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-26
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-29
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-25
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-33
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-32
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-29
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-25
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-31
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-30
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-29
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-27
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-30
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-30
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-20
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-30
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-19
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-29
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-29
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-25
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-28
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-27
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-27
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-28
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-25
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-28
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-25
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-27
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-12
2rfa_A	232	Transient receptor potential cation channel subfa	5e-26
2rfa_A	232	Transient receptor potential cation channel subfa	1e-23
2rfa_A	232	Transient receptor potential cation channel subfa	2e-21
2rfa_A	232	Transient receptor potential cation channel subfa	2e-15
2rfa_A	232	Transient receptor potential cation channel subfa	3e-08
2etb_A	256	Transient receptor potential cation channel subfam	1e-25
2etb_A	256	Transient receptor potential cation channel subfam	9e-21
2etb_A	256	Transient receptor potential cation channel subfam	1e-15
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-25
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-23
2pnn_A	273	Transient receptor potential cation channel subfa	2e-25
2pnn_A	273	Transient receptor potential cation channel subfa	4e-21
2pnn_A	273	Transient receptor potential cation channel subfa	1e-19
2pnn_A	273	Transient receptor potential cation channel subfa	4e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-24
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-22
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-21
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-24
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-24
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-24
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-23
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-22
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-21
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-19
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-20
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-18
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  149 bits (379), Expect = 6e-40
 Identities = 73/287 (25%), Positives = 116/287 (40%), Gaps = 40/287 (13%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEK---LETPLHEACRQGNAEISALLLKTNLFV 57
           A   GH      ++KL   L+   A  N       TPLH A R+G+ E    LL+     
Sbjct: 87  AARIGHTN----MVKL---LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139

Query: 58  ATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEF-----EEDRDESTPLHVAISRGKI 112
              + ++  +   +A + G V V +L      L+E         ++  TPLHVA+    +
Sbjct: 140 -ACMTKKGFTPLHVAAKYGKVRVAEL------LLERDAHPNAAGKNGLTPLHVAVHHNNL 192

Query: 113 DIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLH 172
           DIVK +L    S       N   PLH A++   VE+ + LL        + +  G TPLH
Sbjct: 193 DIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE-SVQGVTPLH 250

Query: 173 QAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL----AESFDFTG 228
            AA  GH +++   + S   + N     G T  HL  + G       L            
Sbjct: 251 LAAQEGHAEMVALLL-SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM------ 303

Query: 229 LLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
            +    + G T LH+A    N +L +++++  + D N +     + L
Sbjct: 304 -VDATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPL 348

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  148 bits (375), Expect = 2e-39
 Identities = 73/281 (25%), Positives = 121/281 (43%), Gaps = 26/281 (9%)

Query: 3   AATGFGHIELVTEIIKLCPQLVAAVNEK---LETPLHEACRQGNAEISALLLKTNLFVAT 59
            A+  GH+ +V  +++      A+ N     +ETPLH A R G+ E++  LL+    V  
Sbjct: 20  VASFMGHLPIVKNLLQRG----ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-N 74

Query: 60  LLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEIL 119
              ++ Q+    A R GH N+VKL+L  +            TPLH+A   G ++ V  +L
Sbjct: 75  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPN-LATTAGHTPLHIAAREGHVETVLALL 133

Query: 120 KVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH 179
           +   S      K    PLH A++ G V + +LLL            NG TPLH A  + +
Sbjct: 134 EKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNN 191

Query: 180 VKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLH-----QQD 234
           + I++  +     S +    +G T  H+A +  +      L        L +      + 
Sbjct: 192 LDIVKLLL-PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL--------LQYGGSANAES 242

Query: 235 QFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
             G T LHLA    + ++   ++ K + + N  N +  T L
Sbjct: 243 VQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPL 282

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  146 bits (372), Expect = 5e-39
 Identities = 83/286 (29%), Positives = 116/286 (40%), Gaps = 36/286 (12%)

Query: 3   AATGFGHIELVTEIIKLCPQLV---AAVNEK---LETPLHEACRQGNAEISALLLKTNLF 56
            A   GH    TE+ K    L+   A VN K    +TPLH A R G+  +  LLL+ N  
Sbjct: 53  MAARAGH----TEVAKY---LLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 105

Query: 57  VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVK 116
              L      +   +A R GHV  V  +L +         +   TPLHVA   GK+ + +
Sbjct: 106 P-NLATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAE 163

Query: 117 EILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAI 176
            +L+        A KN   PLH A    N++I KLLL            NGYTPLH AA 
Sbjct: 164 LLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP-AWNGYTPLHIAAK 221

Query: 177 NGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLL------ 230
              V++  + +     S N  +  G T  HLA + G            +   LL      
Sbjct: 222 QNQVEVARSLL-QYGGSANAESVQGVTPLHLAAQEG----------HAEMVALLLSKQAN 270

Query: 231 -HQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
            +  ++ G T LHL     +  +A+ +IK   V  +       T L
Sbjct: 271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPL 315

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  145 bits (368), Expect = 2e-38
 Identities = 68/286 (23%), Positives = 124/286 (43%), Gaps = 18/286 (6%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
           A   GH+E V  +++      A + +K  TPLH A + G   ++ LLL+ +        +
Sbjct: 120 AAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGK 177

Query: 64  ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRP 123
              +   +A    ++++VKL+L +          +  TPLH+A  + ++++ + +L+   
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236

Query: 124 SFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKIL 183
           S           PLH A++ G+ E+  LLL+ + +  L  N +G TPLH  A  GHV + 
Sbjct: 237 S-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVA 294

Query: 184 EAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL----AESFDFTGLLHQQDQFGNT 239
           +  I       +  T  G T  H+A  +G      FL    A+       ++ + + G +
Sbjct: 295 DVLIKHGV-MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-------VNAKTKLGYS 346

Query: 240 VLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
            LH A  + +  +   ++K      N  +    T L + K  G   
Sbjct: 347 PLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGYIS 391

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  144 bits (366), Expect = 3e-38
 Identities = 67/262 (25%), Positives = 103/262 (39%), Gaps = 28/262 (10%)

Query: 25  AAVNEKLE---TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVV 81
            +     E   TPLH A   G+  I   LL+       + N + ++   +A R GH  V 
Sbjct: 5   ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVA 63

Query: 82  KLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK----VRPSFCEQADKNRCLPL 137
           K +L     +   + +D+ TPLH A   G  ++VK +L+            A      PL
Sbjct: 64  KYLLQNKAKVN-AKAKDDQTPLHCAARIGHTNMVKLLLENNANP-----NLATTAGHTPL 117

Query: 138 HYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCL 197
           H A+R G+VE    LL  +   A      G+TPLH AA  G V++ E  +       N  
Sbjct: 118 HIAAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLL-ERDAHPNAA 175

Query: 198 TTDGDTVFHLALRFGKYNAFIFL----AESFDFTGLLHQQDQFGNTVLHLAILRNNYQLA 253
             +G T  H+A+     +    L              H     G T LH+A  +N  ++A
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGS-------PHSPAWNGYTPLHIAAKQNQVEVA 228

Query: 254 EYIIKKTKVDKNCRNYTNQTAL 275
             +++      N  +    T L
Sbjct: 229 RSLLQY-GGSANAESVQGVTPL 249

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  136 bits (346), Expect = 2e-35
 Identities = 58/245 (23%), Positives = 105/245 (42%), Gaps = 12/245 (4%)

Query: 3   AATGFGHIELVTEIIKLCPQLVAAVNEKLE---TPLHEACRQGNAEISALLLKTNLFVAT 59
            A    ++++V  ++        + +       TPLH A +Q   E++  LL+       
Sbjct: 185 VAVHHNNLDIVKLLLPRG----GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-N 239

Query: 60  LLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEIL 119
             + +  +   LA + GH  +V L+L++        ++   TPLH+    G + +   ++
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGN-LGNKSGLTPLHLVAQEGHVPVADVLI 298

Query: 120 KVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH 179
           K      +   +    PLH AS  GN+++ K LL  + D+  +    GY+PLHQAA  GH
Sbjct: 299 KHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGH 356

Query: 180 VKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNT 239
             I+   +  +  S N +++DG T   +A R G  +    L    D T  +   D+   +
Sbjct: 357 TDIVTLLL-KNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 415

Query: 240 VLHLA 244
                
Sbjct: 416 FPETV 420

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  136 bits (346), Expect = 8e-37
 Identities = 48/270 (17%), Positives = 95/270 (35%), Gaps = 44/270 (16%)

Query: 32  ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLML------ 85
              L +A +  + ++   LL+    V     +   +    A +    ++V+L+L      
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 86  NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEIL----KVRPSFCEQADKNRCLPLHYAS 141
                      ++ +TP  +A   G + ++K  L     V      + D         A+
Sbjct: 66  V-------LRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-----NECDFYGFTAFMEAA 113

Query: 142 RIGNVEITKLLL------NSK---PDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPT 192
             G V+  K L       N +    +   +    G T L  AA  GHV++L+  +     
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

Query: 193 SFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLL-------HQQDQFGNTVLHLAI 245
             N     G      AL     +    +        LL       + + + G T L LA+
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITH------LLLDHGADVNVRGERGKTPLILAV 227

Query: 246 LRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
            + +  L + ++++  ++ N  +   +TAL
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  108 bits (272), Expect = 2e-26
 Identities = 49/292 (16%), Positives = 95/292 (32%), Gaps = 81/292 (27%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEKLE---TPLHEACRQGNAEISALLL------ 51
           A      +    I++L   L+   A    + +   TP   A   G+ ++  L L      
Sbjct: 46  AVQMSRED----IVEL---LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV 98

Query: 52  --KTNLFVATLLNQERQSAFLLACRRGHVNVVKLML---------NQSWLMEFEEDRDES 100
                            +AF+ A   G V  +K +           ++   +    +  +
Sbjct: 99  NECDF---------YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA 149

Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV----EITKLLLNSK 156
           T L  A  +G ++++K +L    +     D      L +A    +      IT LLL+  
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209

Query: 157 PDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNA 216
            D+ ++    G TPL  A    H+ +++  +                         + + 
Sbjct: 210 ADVNVR-GERGKTPLILAVEKKHLGLVQRLLE------------------------QEHI 244

Query: 217 FIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRN 268
            I            +  D  G T L LA+     ++AE + K+     +C +
Sbjct: 245 EI------------NDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 83.7 bits (208), Expect = 4e-18
 Identities = 35/163 (21%), Positives = 55/163 (33%), Gaps = 27/163 (16%)

Query: 129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188
           A       L  A +  +V++ + LL    ++  Q    G+TPLH A       I+E  + 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL- 59

Query: 189 SSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLL-------HQQDQFGNTVL 241
                      +G T F LA   G          S     L        ++ D +G T  
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAG----------SVKLLKLFLSKGADVNECDFYGFTAF 109

Query: 242 HLAILRNNYQLAEYIIK---------KTKVDKNCRNYTNQTAL 275
             A +    +  +++ K         KTK D+        TAL
Sbjct: 110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 69.8 bits (172), Expect = 2e-13
 Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 46/181 (25%)

Query: 3   AATGFGHIELVTEIIKLCPQLV---AAVNEKLE-------------TPLHEACRQGNAEI 46
            A  +G ++     +K    L    A VN + +             T L +A  +G+ E+
Sbjct: 111 EAAVYGKVK----ALKF---LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163

Query: 47  SALLL---------KTNLFVATLLNQERQSAFLLACRRGHVN----VVKLMLNQSWLMEF 93
             +LL           N           ++A + A      +    +  L+L+    +  
Sbjct: 164 LKILLDEMGADVNACDN---------MGRNALIHALLSSDDSDVEAITHLLLDHGADVN- 213

Query: 94  EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
                  TPL +A+ +  + +V+ +L+         D +    L  A  +   +I +LL 
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273

Query: 154 N 154
            
Sbjct: 274 K 274

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  135 bits (343), Expect = 1e-35
 Identities = 35/296 (11%), Positives = 85/296 (28%), Gaps = 46/296 (15%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
           A      +    ++     LV    E+ + P          E++ +            + 
Sbjct: 91  AVMANKTD----LVVA---LVEGAKERGQMPESLLNECDEREVNEIGSHVK-------HC 136

Query: 64  ERQSAFLLACRRG--HVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKV 121
           + Q+A       G  ++ ++K+++         +D+ + TPL  A+     + +  ++  
Sbjct: 137 KGQTALHWCVGLGPEYLEMIKILVQLGASPT-AKDKADETPLMRAMEFRNREALDLMMDT 195

Query: 122 RPSFC----EQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAIN 177
            PS      + A+K     LH+A  I   ++    +    D+ ++ +N    PL+ +   
Sbjct: 196 VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNME-DNEHTVPLYLSVRA 254

Query: 178 GHVKILEAFIASSPTSF------------NCLTTDGDTVFHLALRFGKYNAFIFL----A 221
             V + +  +  +                             A    K      L     
Sbjct: 255 AMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD 314

Query: 222 ESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDV 277
           E       + +    G         +    +    +         R+ +   +  V
Sbjct: 315 E-------VVRSLNTGAGGAVKRKKKAAPAVKRMKLAP-SAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  133 bits (336), Expect = 1e-34
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 56/301 (18%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEK---LETPLHEACRQGNAEISALLLKTNLFV 57
           A   G     T+ ++    L+    +   +     T LH AC+ G  + +  L       
Sbjct: 27  AARKGQ----TDEVRR---LIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG--- 76

Query: 58  ATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKE 117
                   Q    LA      ++V  ++  +             P  +     + ++ + 
Sbjct: 77  EVHSLWHGQKPIHLAVMANKTDLVVALVEGA-------KERGQMPESLLNECDEREVNEI 129

Query: 118 ILKVRPSFCEQADKNRCLPLHYASRIGN--VEITKLLLNSKPDMALQYNNNGYTPLHQAA 175
              V+              LH+   +G   +E+ K+L+        + +    TPL +A 
Sbjct: 130 GSHVK-------HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK-DKADETPLMRAM 181

Query: 176 INGHVKILEAFIASSPTS----FNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLL- 230
              + + L+  + + P+      +     G++  H A+               D      
Sbjct: 182 EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN----------WEDVAMRFV 231

Query: 231 ------HQQDQFGNTVLHLAILRNNYQLAEYIIKK--TKVDKNCRNYTNQTALDVLKESG 282
                 + +D      L+L++      L + +++K    + + C  +   T L       
Sbjct: 232 EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWL 291

Query: 283 T 283
            
Sbjct: 292 D 292

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  131 bits (333), Expect = 3e-34
 Identities = 50/256 (19%), Positives = 101/256 (39%), Gaps = 24/256 (9%)

Query: 24  VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
               +++    +H A R+G  +    L++T +   T+ N+   +A  LAC+ G V+  K 
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKY 71

Query: 84  MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRI 143
           + +     E         P+H+A+   K D+V  ++       E A +   +P    +  
Sbjct: 72  LASVG---EVHSLWHGQKPIHLAVMANKTDLVVALV-------EGAKERGQMPESLLNEC 121

Query: 144 GNVEITKLLLNSKPDMALQYNNNGYTPLHQAAING--HVKILEAFIASSPTSFNCLTTDG 201
              E+ ++  + K       +  G T LH     G  ++++++  +     S        
Sbjct: 122 DEREVNEIGSHVK-------HCKGQTALHWCVGLGPEYLEMIKILV-QLGASPTAKDKAD 173

Query: 202 DTVFHLALRFGKYN-AFIFLAESFDFTGL-LHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
           +T    A+ F       + +      + L L   ++ GN+ LH AIL N   +A   ++ 
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM 233

Query: 260 TKVDKNCRNYTNQTAL 275
             +D N  +  +   L
Sbjct: 234 -GIDVNMEDNEHTVPL 248

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  110 bits (278), Expect = 1e-26
 Identities = 39/234 (16%), Positives = 74/234 (31%), Gaps = 44/234 (18%)

Query: 3   AATGFGHIELVTEIIKLCPQLV---AAVNEKLE---TPLHEACRQGNAEISALLLKTNLF 56
              G  ++E    +IK+   LV   A+   K +   TPL  A    N E   L++ T   
Sbjct: 146 VGLGPEYLE----MIKI---LVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPS 198

Query: 57  VA----TLLNQERQSAFLLACRRGHVNVVKLML------NQSWLMEFEEDRDESTPLHVA 106
            +       N++  S    A      +V    +      N        ED + + PL+++
Sbjct: 199 KSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN-------MEDNEHTVPLYLS 251

Query: 107 ISRGKIDIVKEILKVRPSFCEQA------------DKNRCLPLHYASRIGNVEITKLLLN 154
           +    + + KE+L+    F  QA                   +  A+     E+ +LL  
Sbjct: 252 VRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE 311

Query: 155 SKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLA 208
              ++     N G     +        +    +A S       +        ++
Sbjct: 312 KLDEVVRS-LNTGAGGAVKRKKKAAPAVKRMKLAPSA-PVRTRSRSRARSSAVS 363

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  129 bits (328), Expect = 3e-34
 Identities = 43/272 (15%), Positives = 85/272 (31%), Gaps = 27/272 (9%)

Query: 8   GHIELVTEIIKLCPQLVAAVNEKLE---TPLHEACRQGNAEISALLLKTNLFVATLLNQE 64
              + +   +           +      +  + A    N  +   LL      A     E
Sbjct: 10  WKSKQLKSFLSS-----KDTFKADVHGHSASYYAIADNNVRLVCTLLNAG---ALKNLLE 61

Query: 65  RQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPS 124
            +     A       +VK++L        + D   +T L+ A+  G +  VK  +K    
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWR 120

Query: 125 FCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
                        ++A  + +V I    L+  P           + +H    NGHV ++ 
Sbjct: 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNGHVDMMI 178

Query: 185 AFIASSPTSFNCLTTDGDT-VFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHL 243
             +    TS N   +        LA+               +    L + D    +    
Sbjct: 179 LLL-DYMTSTNTNNSLLFIPDIKLAIDNK----------DIEMLQALFKYDINIYSANLE 227

Query: 244 AILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
            +L ++ ++A+ II+K  V+    +YT    +
Sbjct: 228 NVLLDDAEIAKMIIEK-HVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 97.6 bits (244), Expect = 8e-23
 Identities = 31/190 (16%), Positives = 68/190 (35%), Gaps = 23/190 (12%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEK---LETPLHEACRQGNAEISALLLKTNLFV 57
           A      +    I+K+   L+      ++      T L+ A   GN +   L +K N  +
Sbjct: 69  AATLEDTK----IVKI---LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121

Query: 58  ATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKE 117
                   +++F  A     V++V   L++       +     + +H+ I  G +D++  
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI--PSTFDLAILLSCIHITIKNGHVDMMIL 179

Query: 118 ILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAIN 177
           +L    S            +  A    ++E+ + L         +Y+ N Y+   +  + 
Sbjct: 180 LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL--------FKYDINIYSANLENVLL 231

Query: 178 GHVKILEAFI 187
              +I +  I
Sbjct: 232 DDAEIAKMII 241

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  131 bits (333), Expect = 3e-34
 Identities = 44/262 (16%), Positives = 88/262 (33%), Gaps = 24/262 (9%)

Query: 32  ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLM 91
             P  +    GN  +      TNL + T    E           G   + + +  +S  +
Sbjct: 62  LYPNPQGYGNGNDFL-GDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRES--V 117

Query: 92  EFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFC-------EQADKNRCLPLHYASRIG 144
              + R   T LH   S    +  ++++      C          D +   PL  A    
Sbjct: 118 NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR 177

Query: 145 NVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPT--SFNCLTTDGD 202
              +   L+ +  D  +  N +  + LHQAA N    ++   + S+        L  +G 
Sbjct: 178 RRRLVAYLMKAGADPTIY-NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM 236

Query: 203 TVFHLALRFGKYNAFIFLAE---------SFDFTGLLHQQDQFGNTVLHLAILRNNYQLA 253
           T   +       +  +  A+          +D       +   G T LH A   +N  + 
Sbjct: 237 TALMIVAHNEGRDQ-VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295

Query: 254 EYIIKKTKVDKNCRNYTNQTAL 275
           +Y++ +   +K+ ++   +T +
Sbjct: 296 KYLVGEKGSNKDKQDEDGKTPI 317

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  123 bits (312), Expect = 3e-31
 Identities = 46/310 (14%), Positives = 96/310 (30%), Gaps = 45/310 (14%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLE---TPLHEACRQGNAEISALLLKTNLFVATL 60
             G G+      +       +    E        LH     G+  I+  + + ++ +   
Sbjct: 68  GYGNGN----DFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIID- 121

Query: 61  LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEF-------EEDRDESTPLHVAISRGKID 113
             +  ++              + ++                 D DE+TPL +A+   +  
Sbjct: 122 -PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 114 IVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMAL--QYNNNGYTPL 171
           +V  ++K         +K+    LH A+   +  +   +LNS        + + NG T L
Sbjct: 181 LVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 239

Query: 172 HQAAING---HVKILEAFI-------ASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA 221
              A N     V   +  +              +     G T  H A +        +L 
Sbjct: 240 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL- 298

Query: 222 ESFDFTGLLHQ------QDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
                  +  +      QD+ G T + LA      ++  Y+I++        + T+ TA 
Sbjct: 299 -------VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTAR 350

Query: 276 DVLKESGTKE 285
            + + +    
Sbjct: 351 QLAQANNHHN 360

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  116 bits (294), Expect = 8e-29
 Identities = 44/280 (15%), Positives = 87/280 (31%), Gaps = 43/280 (15%)

Query: 8   GHIELVTEIIKLCPQLVAAVNEKL--ETPLHEACRQGNAEISALLLKTNLFVATLLNQ-- 63
           G   +   I +        + +     T LH      +AE S  L+         +    
Sbjct: 104 GSYAITEPITRES----VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHE--AKECIAAGA 157

Query: 64  -------ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVK 116
                  +  +  +LA       +V  ++          ++ E + LH A +     ++ 
Sbjct: 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMV 216

Query: 117 EILKVRPSFC--EQADKNRCLPLHYASRIGN---VEITKLLLN-------SKPDMALQYN 164
            +L         E+ D+N    L   +       V   KLL+                  
Sbjct: 217 YMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK 276

Query: 165 NNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESF 224
             G T LH AA   ++ I++  +    ++ +    DG T   LA + G+    ++L    
Sbjct: 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL---- 332

Query: 225 DFTGLLH-----QQDQFGNTVLHLAILRNNYQLAEYIIKK 259
               +         D   +T   LA   N++ + +   + 
Sbjct: 333 ----IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  108 bits (273), Expect = 5e-26
 Identities = 35/261 (13%), Positives = 80/261 (30%), Gaps = 32/261 (12%)

Query: 32  ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLM 91
           +  L EA   G  +               L              G+  +         + 
Sbjct: 38  QHSLLEASYDGYIKR----------QRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIP 87

Query: 92  EFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKL 151
             E + +    LH   + G   I + I +   +  +   ++    LH+ +   + E ++ 
Sbjct: 88  T-EPEPESPIKLHTE-AAGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSED 143

Query: 152 LLNSKPDMALQY-------NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTV 204
           L+  +    +         + +  TPL  A +    +++   +  +            + 
Sbjct: 144 LIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM-KAGADPTIYNKSERSA 202

Query: 205 FHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQL---AEYIIKK-- 259
            H A     +   +++  S    G + + D+ G T L +            A+ +++K  
Sbjct: 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA 262

Query: 260 -----TKVDKNCRNYTNQTAL 275
                    K+   Y  +TAL
Sbjct: 263 KVDYDGAARKDSEKYKGRTAL 283

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  101 bits (255), Expect = 1e-23
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 26/202 (12%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEK---LETPLHEACRQGNAEISALLLKTNLFV 57
           A           ++     L+   A          + LH+A    +  +   +L +    
Sbjct: 173 AVLARRRR----LVAY---LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK 225

Query: 58  ATL--LNQERQSAFLLACRRGH---VNVVKLMLNQ-------SWLMEFEEDRDESTPLHV 105
             +  L++   +A ++         V   KL++ +           +  E     T LH 
Sbjct: 226 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285

Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
           A     + IVK ++  + S  ++ D++   P+  A++ G +E+   L+     +    + 
Sbjct: 286 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV-DA 344

Query: 166 NGYTPLHQAAINGHVKILEAFI 187
             +T    A  N H  I++ F 
Sbjct: 345 TDHTARQLAQANNHHNIVDIFD 366

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 15/169 (8%)

Query: 3   AATGFGHIELVTEIIKLCPQLVAAVNEK---LETPLHEACRQGNAEISA---LLL----- 51
            A        +   +    +L   + E      T L         +  A   LL+     
Sbjct: 205 QAAANRDFG-MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK 263

Query: 52  --KTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISR 109
                         + ++A   A +  ++ +VK ++ +    + ++D D  TP+ +A   
Sbjct: 264 VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE 323

Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPD 158
           G+I++V  +++   S  E  D         A    +  I  +    +P+
Sbjct: 324 GRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 18/113 (15%)

Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG-KYNAFIFLAE 222
             +    L +A+ +G++K             N L              G  +        
Sbjct: 34  ITSSQHSLLEASYDGYIKRQR----------NELQHYSLYPNPQGYGNGNDFLGDFNHTN 83

Query: 223 SFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
               T    + +      LH      +Y + E I ++  V+     + N+T L
Sbjct: 84  LQIPT----EPEPESPIKLHTEA-AGSYAITEPITRE-SVNIIDPRH-NRTVL 129

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  126 bits (320), Expect = 9e-34
 Identities = 44/215 (20%), Positives = 89/215 (41%), Gaps = 18/215 (8%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLK--TNLFVATLL 61
           A        V E++   P L+   ++    PLH +      EI++ LL    N+ +    
Sbjct: 9   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68

Query: 62  NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEE-DRDESTPLHVAISRGKIDIVKEILK 120
           +    + F +AC  G++ VVK + ++    +  +      T LH+A+ +   ++ + +++
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128

Query: 121 VRPSFCEQADKNRCLPLHYASRIGNVEITKLLL-------NSKPDMALQYNNNGYTPLHQ 173
              S     DK   +PLH A+ +G++++ +LL        N +       +  G+TPL  
Sbjct: 129 NGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ-------DKQGWTPLFH 180

Query: 174 AAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLA 208
           A   GH       +      ++ +   G     +A
Sbjct: 181 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  114 bits (289), Expect = 2e-29
 Identities = 44/257 (17%), Positives = 90/257 (35%), Gaps = 40/257 (15%)

Query: 32  ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ--SW 89
             PLH+AC +        LL +   +    +Q+ +     +       +   +L++  + 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

Query: 90  LMEFEEDRDESTPLHVAISRGKIDIVKE-ILKVRPSFCEQADKNRCLPLHYASRIGNVEI 148
            ++   D    TP H+A S G +++VK    +       +        LH A      E+
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122

Query: 149 TKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLA 208
           ++ L+ +   + ++ +     PLH+AA  G +K++E       ++ N             
Sbjct: 123 SQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVN------------- 168

Query: 209 LRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRN 268
                                   QD+ G T L  A+   +   A  +++K   + +  +
Sbjct: 169 -----------------------WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205

Query: 269 YTNQTALDVLKESGTKE 285
                A DV      K+
Sbjct: 206 NKGAKAEDVALNEQVKK 222

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  101 bits (255), Expect = 8e-25
 Identities = 40/206 (19%), Positives = 64/206 (31%), Gaps = 50/206 (24%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEKLE------TPLHEACRQGNAEISALLL--- 51
           +  F   E    I      L+     VN          TP H AC  GN E+   L    
Sbjct: 43  SVSFQAHE----ITSF---LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95

Query: 52  -KTNLFVATLLNQERQSAFLLACRRGHVNVVKLML------NQSWLMEFEEDRDESTPLH 104
            K +L        +  +   LA  +    V + ++               +D+    PLH
Sbjct: 96  LKPDLNKI---TNQGVTCLHLAVGKKWFEVSQFLIENGASVR-------IKDKFNQIPLH 145

Query: 105 VAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL-------NSKP 157
            A S G + +++ +  +  S     DK    PL +A   G+ +   LL+       +   
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV- 204

Query: 158 DMALQYNNNGYTPLHQAAINGHVKIL 183
                 +N G      A      K  
Sbjct: 205 ------DNKGAKAEDVALNEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 58.2 bits (142), Expect = 8e-10
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 17/118 (14%)

Query: 167 GYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDF 226
              PLHQA +      ++  + S P+       DG    H ++ F  +    FL      
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL------ 55

Query: 227 TGLLH--------QQDQFGNTVLHLAILRNNYQLAEYII-KKTKVDKNCRNYTNQTAL 275
             L            D  G T  H+A    N ++ + +  +  K D N       T L
Sbjct: 56  --LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  125 bits (318), Expect = 2e-33
 Identities = 53/249 (21%), Positives = 106/249 (42%), Gaps = 36/249 (14%)

Query: 27  VNEKLE---TPLHEACRQGNAEISALLL--------KTNLFVATLLNQERQSAFLLACRR 75
              + +   +PLH A   G+ +I  +L+         +          ++++  + A   
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE---------DQRTPLMEAAEN 54

Query: 76  GHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCL 135
            H+  VK ++    L++  +D + ST LH+A  +G  ++V+ +L          D     
Sbjct: 55  NHLEAVKYLIKAGALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT 113

Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
           P+ +A+   +V++ KLLL+   D+ ++ +N     LH AA +G V I E  + ++    +
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIAEILL-AAKCDLH 171

Query: 196 CLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLH-----QQDQFGNTVLHLAILRNNY 250
            +   GD+  H+A R  +Y+  +          L        +++ G T L  A L +  
Sbjct: 172 AVNIHGDSPLHIAARENRYDCVVLF--------LSRDSDVTLKNKEGETPLQCASLNSQV 223

Query: 251 QLAEYIIKK 259
             A  + K 
Sbjct: 224 WSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  110 bits (277), Expect = 1e-27
 Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 20/189 (10%)

Query: 94  EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
            E +++ +PLH A   G +DI   +++   +  +   +++  PL  A+   ++E  K L+
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 154 NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
            +   +  + +  G T LH AA  GH ++++  +++     NC    G T    A  +  
Sbjct: 65  KAGALVDPK-DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK- 122

Query: 214 YNAFIFLAESFDFTGLL-------HQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNC 266
                      D   LL       + +D   N  LH A       +AE ++   K D + 
Sbjct: 123 ---------HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA-KCDLHA 172

Query: 267 RNYTNQTAL 275
            N    + L
Sbjct: 173 VNIHGDSPL 181

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  109 bits (275), Expect = 2e-27
 Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 16/190 (8%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEK---LETPLHEACRQGNAEISALLLKTNLFV 57
           A    H+E     +K    L+   A V+ K     T LH A ++G+ E+   LL      
Sbjct: 51  AAENNHLE----AVKY---LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD 103

Query: 58  ATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKE 117
               +    +  + A    HV++VKL+L++   +    D +E+  LH A   G +DI + 
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-IRDNEENICLHWAAFSGCVDIAEI 162

Query: 118 ILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAIN 177
           +L  +       + +   PLH A+R    +   L L+   D+ L+ N  G TPL  A++N
Sbjct: 163 LLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK-NKEGETPLQCASLN 220

Query: 178 GHVKILEAFI 187
             V       
Sbjct: 221 SQVWSALQMS 230

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 85.5 bits (213), Expect = 4e-19
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 17/155 (10%)

Query: 127 EQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF 186
           +   +N+  PLH A+  G+V+I  +L+ +  ++    + +  TPL +AA N H++ ++  
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC-SEDQRTPLMEAAENNHLEAVKYL 63

Query: 187 IASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLH------QQDQFGNTV 240
           I  +    +    +G T  HLA + G Y    +L        L +       QD  G T 
Sbjct: 64  I-KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYL--------LSNGQMDVNCQDDGGWTP 114

Query: 241 LHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
           +  A    +  L + ++ K   D N R+      L
Sbjct: 115 MIWATEYKHVDLVKLLLSK-GSDINIRDNEENICL 148

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 76.3 bits (189), Expect = 6e-16
 Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 19/165 (11%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLL--------KTNL 55
           A   GH E+V  ++      V   ++   TP+  A    + ++  LLL        + N 
Sbjct: 84  AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN- 142

Query: 56  FVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIV 115
                   E       A   G V++ +++L     +    +    +PLH+A    + D V
Sbjct: 143 --------EENICLHWAAFSGCVDIAEILLAAKCDLH-AVNIHGDSPLHIAARENRYDCV 193

Query: 116 KEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
              L          +K    PL  AS    V     +  +  D A
Sbjct: 194 VLFLSRDSDV-TLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  124 bits (313), Expect = 1e-32
 Identities = 48/248 (19%), Positives = 82/248 (33%), Gaps = 21/248 (8%)

Query: 23  LVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ---ERQSAFLLACRRGHVN 79
           +    +E  +TPLH A  QGN      L+         L+     RQ+   LA      +
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 80  VVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK---VRPSFCEQADKNRCLP 136
           VV+L++          DR   T  H+A        ++ +L          E  + +    
Sbjct: 61  VVRLLVTAGASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119

Query: 137 LHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNC 196
           LH A      E  +LLL    D+      +G +PL  A  N  + +++  +     + N 
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-QHGANVNA 178

Query: 197 LTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLH-----QQDQFGNTVLHLAILRNNYQ 251
               G +  H A   G       L        +        ++   +T L +A  R    
Sbjct: 179 QMYSGSSALHSASGRGLLPLVRTL--------VRSGADSSLKNCHNDTPLMVARSRRVID 230

Query: 252 LAEYIIKK 259
           +      +
Sbjct: 231 ILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  114 bits (288), Expect = 4e-29
 Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 22/194 (11%)

Query: 94  EEDRDESTPLHVAISRGKIDIVKEILKVRPSFC---EQADKNRCLPLHYASRIGNVEITK 150
             D D  TPLH+A+ +G +  V  ++ +        +  +  R  PLH A       + +
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63

Query: 151 LLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI---ASSPTSFNCLTTDGDTVFHL 207
           LL+ +        + +G T  H A  +     L A +   A           DG T  H+
Sbjct: 64  LLVTAGASPMAL-DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122

Query: 208 ALRFGKYNAFIFLAESFDFTGLLH------QQDQFGNTVLHLAILRNNYQLAEYIIKKTK 261
           A+          L        L           + G + L  A+  N+  + + +++   
Sbjct: 123 AVNTECQETVQLL--------LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-G 173

Query: 262 VDKNCRNYTNQTAL 275
            + N + Y+  +AL
Sbjct: 174 ANVNAQMYSGSSAL 187

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  103 bits (259), Expect = 3e-25
 Identities = 38/193 (19%), Positives = 72/193 (37%), Gaps = 18/193 (9%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEK---LETPLHEACRQGNAEISALLLKTNLFV 57
           A           +++L   LV   A+        +T  H AC   +      LL +    
Sbjct: 53  AVITTLPS----VVRL---LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPG 105

Query: 58  ATLLN---QERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDI 114
              L     +  +A  +A        V+L+L +   ++  + +   +PL  A+    + +
Sbjct: 106 TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM 165

Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQA 174
           V+ +L+   +       +    LH AS  G + + + L+ S  D +L+ N +  TPL  A
Sbjct: 166 VQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK-NCHNDTPLMVA 223

Query: 175 AINGHVKILEAFI 187
                + IL    
Sbjct: 224 RSRRVIDILRGKA 236

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 79.0 bits (196), Expect = 9e-17
 Identities = 25/158 (15%), Positives = 55/158 (34%), Gaps = 13/158 (8%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEK---LETPLHEACRQGNAEISALLLKTNLFVATL 60
           A        +  ++         +  +     T LH A      E   LLL+    +  +
Sbjct: 86  ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145

Query: 61  LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
             +  +S  + A     +++V+L+L     +   +    S+ LH A  RG + +V+ +++
Sbjct: 146 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVN-AQMYSGSSALHSASGRGLLPLVRTLVR 204

Query: 121 ----VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLN 154
                        + +   PL  A     ++I +    
Sbjct: 205 SGADS-----SLKNCHNDTPLMVARSRRVIDILRGKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.2 bits (103), Expect = 7e-05
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 229 LLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTK---VDKNCRNYTNQTAL 275
           +  + D+ G+T LH+A+++ N      ++   +    + +  N   QT L
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL 50

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  120 bits (303), Expect = 2e-31
 Identities = 42/219 (19%), Positives = 74/219 (33%), Gaps = 19/219 (8%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEK---LETPLHEACRQGNAEISALLLK----TNLF 56
           A       L  E+I+     +A +N +    +TPLH A      EI+  LL         
Sbjct: 15  AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-- 72

Query: 57  VATLLNQERQSAFLLACRRGHVNVVKLML----NQSWLMEFEE-DRDESTPLHVAISRGK 111
              L +    +   LAC +G +  V ++             +  + +  T LH+A   G 
Sbjct: 73  ---LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129

Query: 112 IDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPL 171
           + IV+ ++ +      Q   N    LH A  + N ++  LLL    D+       GY+P 
Sbjct: 130 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV-TYQGYSPY 188

Query: 172 HQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALR 210
                    +I +            +  + +        
Sbjct: 189 QLTWGRPSTRIQQQLG-QLTLENLQMLPESEDEESYDTE 226

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  116 bits (293), Expect = 6e-30
 Identities = 45/274 (16%), Positives = 89/274 (32%), Gaps = 59/274 (21%)

Query: 26  AVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ---ERQSAFLLACRRGHVNVVK 82
            + E  ++ LH A       ++  +++        LN     +Q+   LA       + +
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 83  LML------NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK-----VRPSFCEQADK 131
            +L                D   +TPLH+A  +G +  V  + +        S  +  + 
Sbjct: 63  ALLGAGCDPE-------LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY 115

Query: 132 NRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSP 191
           N    LH AS  G + I +LL++   D+  Q   NG T LH A    +  ++   +    
Sbjct: 116 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL---- 171

Query: 192 TSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQ 251
                                K  A +            ++    G +   L   R + +
Sbjct: 172 ---------------------KCGADV------------NRVTYQGYSPYQLTWGRPSTR 198

Query: 252 LAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
           + + + + T ++       ++       ES   E
Sbjct: 199 IQQQLGQLT-LENLQMLPESEDEESYDTESEFTE 231

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 84.9 bits (211), Expect = 7e-19
 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 11/157 (7%)

Query: 127 EQADKNRCLPLHYASRIGN----VEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKI 182
           +Q  ++    LH A         +E+ + +      +  Q NN   TPLH A I    +I
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEI 60

Query: 183 LEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAE---SFDFTGLLHQQDQFGNT 239
            EA +  +          G+T  HLA   G   +   L +   +     +L   +  G+T
Sbjct: 61  AEALL-GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119

Query: 240 VLHLAILRNNYQLAEYIIKKTKVDKNCRNYTN-QTAL 275
            LHLA +     + E ++     D N +   N +TAL
Sbjct: 120 CLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTAL 155

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.0 bits (175), Expect = 3e-14
 Identities = 32/187 (17%), Positives = 48/187 (25%), Gaps = 43/187 (22%)

Query: 4   ATGFGHIELVTEIIKLC--PQLVAAVNEKL---ETPLHEACRQGNAEISALLLKTNLFVA 58
           A   G +  V  + + C  P L + +        T LH A   G   I  LL+       
Sbjct: 85  ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS------ 138

Query: 59  TLLNQERQSAFLLACRRG-HVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKE 117
                            G  VN               E  +  T LH+A+     D+V  
Sbjct: 139 ----------------LGADVNAQ-------------EPCNGRTALHLAVDLQNPDLVSL 169

Query: 118 ILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAIN 177
           +LK               P        +  I + L     +  LQ              +
Sbjct: 170 LLKCGADVNRV-TYQGYSPYQLTWGRPSTRIQQQLGQLTLE-NLQMLPESEDEESYDTES 227

Query: 178 GHVKILE 184
              +  E
Sbjct: 228 EFTEFTE 234

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  120 bits (304), Expect = 3e-31
 Identities = 42/240 (17%), Positives = 87/240 (36%), Gaps = 16/240 (6%)

Query: 25  AAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLM 84
           A+ +       +    +    + +  +     +    ++  ++A  LA R    +  K +
Sbjct: 17  ASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRL 76

Query: 85  LNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG 144
           L  S      +D    TPLH A+S     + + +++ R +  +    +   PL  A+R+ 
Sbjct: 77  LEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 135

Query: 145 NVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTV 204
              + + L+NS  D+    ++ G + LH AA   +V      +  +  + +      +T 
Sbjct: 136 VEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETP 193

Query: 205 FHLALRFGKYNAFIFLAESFDFTGLLH-----QQDQFGNTVLHLAILRNNYQLAEYIIKK 259
             LA R G Y     L        L H       D        +A  R ++ +   +  +
Sbjct: 194 LFLAAREGSYETAKVL--------LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 80.2 bits (199), Expect = 4e-17
 Identities = 31/188 (16%), Positives = 49/188 (26%), Gaps = 37/188 (19%)

Query: 94  EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
               D  TPL +A   G                           +         +    +
Sbjct: 5   VRGPDGFTPLMIASCSG---------------------GGLETGNSEEEEDAPAVISDFI 43

Query: 154 NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
                +  Q +  G T LH AA        +  +  +    N     G T  H A+    
Sbjct: 44  YQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADA 102

Query: 214 YNAFIFLAESFDFTGLLH------QQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCR 267
              F  L        + +       +   G T L LA       + E +I     D N  
Sbjct: 103 QGVFQIL--------IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAV 153

Query: 268 NYTNQTAL 275
           +   ++AL
Sbjct: 154 DDLGKSAL 161

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 73.7 bits (182), Expect = 6e-15
 Identities = 30/180 (16%), Positives = 51/180 (28%), Gaps = 51/180 (28%)

Query: 3   AATGFGHIELVTEIIKLCPQLVAAVNEK---LETPLHEACRQGNAEISALLL-------- 51
           AA        V +I  L       ++ +     TPL  A R     +   L+        
Sbjct: 96  AAVSADAQG-VFQI--LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152

Query: 52  KTNLFVATLLNQERQSAFLLACRRGHVNVVKLML------NQSWLMEFEEDRDESTPLHV 105
             +           +SA   A    +V+   ++L      +        ++  E TPL +
Sbjct: 153 VDD---------LGKSALHWAAAVNNVDAAVVLLKNGANKD-------MQNNREETPLFL 196

Query: 106 AISRGKIDIVK-------EILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPD 158
           A   G  +  K                 +  D    LP   A    + +I +LL      
Sbjct: 197 AAREGSYETAKVLLDHFANR--------DITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  122 bits (308), Expect = 6e-31
 Identities = 61/264 (23%), Positives = 96/264 (36%), Gaps = 40/264 (15%)

Query: 25  AAVNEKLE---TPLHEACRQGNA-EISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV 80
           A      E     L EA R GN  ++ ALL   N+      +  + +   LA     V +
Sbjct: 15  AKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNC-HASDGRKSTPLHLAAGYNRVRI 73

Query: 81  VKLML------NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRC 134
           V+L+L      +        +D+    PLH A S G  ++ + +LK         D  + 
Sbjct: 74  VQLLLQHGADVH-------AKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQF 125

Query: 135 LPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSF 194
            PLH A+    VE+  LLL+   D  L  N +G + +  A      + L           
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGADPTLV-NCHGKSAVDMAPTPELRERLTYEF------- 177

Query: 195 NCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILR---NNYQ 251
                 G ++   A           LA       +  +Q Q   T LH A+        Q
Sbjct: 178 -----KGHSLLQAAREADLAKVKKTLALE----IINFKQPQSHETALHCAVASLHPKRKQ 228

Query: 252 LAEYIIKKTKVDKNCRNYTNQTAL 275
           +AE +++K   + N +N    T L
Sbjct: 229 VAELLLRK-GANVNEKNKDFMTPL 251

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  121 bits (305), Expect = 2e-30
 Identities = 59/324 (18%), Positives = 94/324 (29%), Gaps = 85/324 (26%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEK---LETPLHEACRQGNAEISALLL--------K 52
           A   G+ E   +++ L   L    +       TPLH A       I  LLL        K
Sbjct: 31  AARSGNEE---KLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87

Query: 53  TNLFVATLLNQERQSAFLLACRRGHVNVVKLML------NQSWLMEFEEDRDESTPLHVA 106
                              AC  GH  V +L+L      N         D  + TPLH A
Sbjct: 88  DK---------GGLVPLHNACSYGHYEVTELLLKHGACVN-------AMDLWQFTPLHEA 131

Query: 107 ISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDM--ALQYN 164
            S+ ++++   +L          + +    +  A      E           +  A + +
Sbjct: 132 ASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREAD 190

Query: 165 ------------------NNGYTPLHQAAINGHVKILE---------AFIASSPTSFNCL 197
                              +  T LH A  + H K  +         A +       N  
Sbjct: 191 LAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-------NEK 243

Query: 198 TTDGDTVFHLALRFGKYNAFIFL----AESFDFTGLLHQQDQFGNTVLHLAILRNNYQLA 253
             D  T  H+A      +    L    A+       ++  D  G T LH A L  + Q  
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAK-------MNALDSLGQTALHRAALAGHLQTC 296

Query: 254 EYIIKKTKVDKNCRNYTNQTALDV 277
             ++     D +  +    TA  +
Sbjct: 297 RLLLSY-GSDPSIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  103 bits (259), Expect = 2e-24
 Identities = 39/218 (17%), Positives = 80/218 (36%), Gaps = 41/218 (18%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEK---LETPLHEACRQGNAEISALLLKTNLFV 57
           A     +E    +  L   L+   A         ++ +  A      E      K     
Sbjct: 131 AASKNRVE----VCSL---LLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK----- 178

Query: 58  ATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRG---KIDI 114
                     + L A R   +  VK  L    ++ F++ +   T LH A++     +  +
Sbjct: 179 --------GHSLLQAAREADLAKVKKTLALE-IINFKQPQSHETALHCAVASLHPKRKQV 229

Query: 115 VKEILK----VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTP 170
            + +L+    V      + +K+   PLH A+   + ++ ++L      M    ++ G T 
Sbjct: 230 AELLLRKGANV-----NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL-DSLGQTA 283

Query: 171 LHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLA 208
           LH+AA+ GH++     + S  +  + ++  G T   + 
Sbjct: 284 LHRAALAGHLQTCRLLL-SYGSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 85.6 bits (213), Expect = 2e-18
 Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 35/193 (18%)

Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV-EITKLLLNSKPDM 159
           + L +A    K  +                + +   L  A+R GN  ++  LL     + 
Sbjct: 6   SALDLADPSAKAVL--------------TGEYKKDELLEAARSGNEEKLMALLTPLNVNC 51

Query: 160 ALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIF 219
               +    TPLH AA    V+I++  +       +     G    H A  +G       
Sbjct: 52  HAS-DGRKSTPLHLAAGYNRVRIVQLLL-QHGADVHAKDKGGLVPLHNACSYG------- 102

Query: 220 LAESFDFTGLL-------HQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQ 272
               ++ T LL       +  D +  T LH A  +N  ++   ++     D    N   +
Sbjct: 103 ---HYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGK 158

Query: 273 TALDVLKESGTKE 285
           +A+D+      +E
Sbjct: 159 SAVDMAPTPELRE 171

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 23/136 (16%), Positives = 38/136 (27%), Gaps = 19/136 (13%)

Query: 147 EITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFH 206
           +    L +      L         L  A      K++         + +       T  H
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLT-PLNVNCHASDGRKSTPLH 63

Query: 207 LALRFGKYNAFIFLAESFDFTGLL-------HQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
           LA  +                 LL       H +D+ G   LH A    +Y++ E ++K 
Sbjct: 64  LAAGYN----------RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH 113

Query: 260 TKVDKNCRNYTNQTAL 275
                N  +    T L
Sbjct: 114 -GACVNAMDLWQFTPL 128

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  119 bits (301), Expect = 1e-30
 Identities = 49/286 (17%), Positives = 97/286 (33%), Gaps = 38/286 (13%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEK--------LETPLHEACRQGNAEISALLLKTNL 55
            +   H    + ++       + +              P       G   +S  L+    
Sbjct: 2   GSSHHHHHHSSGLVPRG----SHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD-- 55

Query: 56  FVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIV 115
                      S    A   GH   ++ +++Q W +      D  +PLH A   G +  V
Sbjct: 56  ------AVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITADHVSPLHEACLGGHLSCV 108

Query: 116 KEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAA 175
           K +LK           +   PL  A   G+ +   LLL       +Q  ++  +P+H+AA
Sbjct: 109 KILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS--VQPESDLASPIHEAA 165

Query: 176 INGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLH---- 231
             GHV+ + + I +   + +   +   T  +LA    +      L        L      
Sbjct: 166 RRGHVECVNSLI-AYGGNIDHKISHLGTPLYLACENQQRACVKKL--------LESGADV 216

Query: 232 QQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDV 277
            Q +  ++ LH  +   + +LA  ++     D   +N   +  +++
Sbjct: 217 NQGKGQDSPLHAVVRTASEELACLLMDF-GADTQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  116 bits (292), Expect = 3e-29
 Identities = 44/228 (19%), Positives = 73/228 (32%), Gaps = 42/228 (18%)

Query: 3   AATGFGHIELVTEIIKLCPQLV---AAVNEKLE---TPLHEACRQGNAEISALLL----- 51
            A   GH       ++    L+    AVN       +PLHEAC  G+     +LL     
Sbjct: 65  EAAIHGH----QLSLRN---LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117

Query: 52  ---KTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAIS 108
               T          +  +    AC  G  + V L+L        + + D ++P+H A  
Sbjct: 118 VNGVTA---------DWHTPLFNACVSGSWDCVNLLLQHG--ASVQPESDLASPIHEAAR 166

Query: 109 RGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGY 168
           RG ++ V  ++    +  +    +   PL+ A         K LL S  D  +       
Sbjct: 167 RGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGAD--VNQGKGQD 223

Query: 169 TPLHQAAINGHVKILEAFI---ASSPTSFNCLTTDGDTVFHLALRFGK 213
           +PLH        ++    +   A           +G     L      
Sbjct: 224 SPLHAVVRTASEELACLLMDFGA----DTQAKNAEGKRPVELVPPESP 267

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  109 bits (274), Expect = 8e-27
 Identities = 45/193 (23%), Positives = 71/193 (36%), Gaps = 33/193 (17%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEKLE---TPLHEACRQGNAEISALLL------ 51
           A   GH       +K+   L+   A VN       TPL  AC  G+ +   LLL      
Sbjct: 99  ACLGGH----LSCVKI---LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151

Query: 52  -KTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRG 110
              +         +  S    A RRGHV  V  ++     ++  +     TPL++A    
Sbjct: 152 QPES---------DLASPIHEAARRGHVECVNSLIAYGGNID-HKISHLGTPLYLACENQ 201

Query: 111 KIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTP 170
           +   VK++L+          K +  PLH   R  + E+  LL++   D   + N  G  P
Sbjct: 202 QRACVKKLLESGADV--NQGKGQDSPLHAVVRTASEELACLLMDFGADTQAK-NAEGKRP 258

Query: 171 LHQAAINGHVKIL 183
           +        +  L
Sbjct: 259 VELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 99.1 bits (248), Expect = 2e-23
 Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 27/213 (12%)

Query: 71  LACRRGHVNVVKLMLNQ----SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFC 126
           +     H +    ++ +    + +   +   D S P       G   +   ++       
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLM------- 53

Query: 127 EQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF 186
                +   P+H A+  G+    + L++    + +    +  +PLH+A + GH+  ++  
Sbjct: 54  -GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNII-TADHVSPLHEACLGGHLSCVKIL 111

Query: 187 IASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLH----QQDQFGNTVLH 242
           +       N +T D  T    A   G ++    L        L H    Q +    + +H
Sbjct: 112 L-KHGAQVNGVTADWHTPLFNACVSGSWDCVNLL--------LQHGASVQPESDLASPIH 162

Query: 243 LAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
            A  R + +    +I     + + +     T L
Sbjct: 163 EAARRGHVECVNSLIAY-GGNIDHKISHLGTPL 194

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  119 bits (301), Expect = 2e-30
 Identities = 53/286 (18%), Positives = 84/286 (29%), Gaps = 43/286 (15%)

Query: 26  AVNEKLETPLHEACRQGNAEISALLLKT--NLFVATLLNQERQSAFLLACRRGHVNVVKL 83
            V E  +T LH A    +      LL          L N   Q+A  LA   G  + V+ 
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 84  ML------NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ--------- 128
           +                 +R   T LH+A           +L+ RPS             
Sbjct: 64  LYAAGAGVL-------VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS 116

Query: 129 ---ADKNRCLPLHYASRIGN-VEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
                     P    S+     E      + +  +  + N +G+TPLH A I+   +++ 
Sbjct: 117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVR 175

Query: 185 AFIASSPTSFNCLTTD-GDTVFHLALRFGKYNAFIFL----AESFDFTGLLHQQDQFGNT 239
                +    N      G T  HLA+     +    L    A+          +   G T
Sbjct: 176 LLR-DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-------PTARMYGGRT 227

Query: 240 VLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
            L  A+LR N  LA  +       +        +           +
Sbjct: 228 PLGSALLRPNPILARLLRAH-GAPEPEDGGDKLSPCSSSGSDSDSD 272

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 69.5 bits (171), Expect = 3e-13
 Identities = 20/137 (14%), Positives = 41/137 (29%), Gaps = 13/137 (9%)

Query: 25  AAVNEK---LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVV 81
             +  +     TPLH A    +AE+  LL      +        ++   LA      +V+
Sbjct: 149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208

Query: 82  KLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK----VRPSFCEQADKNRCLPL 137
           +L+L               TPL  A+ R    + + +             +   ++  P 
Sbjct: 209 ELLLKAGADPT-ARMYGGRTPLGSALLRPNPILARLLRAHGAPE-----PEDGGDKLSPC 262

Query: 138 HYASRIGNVEITKLLLN 154
             +    + +       
Sbjct: 263 SSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 16/131 (12%)

Query: 164 NNNGYTPLHQAAINGHVKILEAFIAS--SPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA 221
             +G T LH A I+ H   L+  +         +     G T  HLA   G+ +    L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL- 64

Query: 222 ESFDFTGLLH-----QQDQFGNTVLHLAILRNNYQLAEYIIKK-TKVDKNCRNYTNQTAL 275
                            ++ G+T LHLA     +  A  +++      ++  +     + 
Sbjct: 65  -------YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

Query: 276 DVLKESGTKEA 286
           D   ++    A
Sbjct: 118 DCTPDTSHAPA 128

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.5 bits (145), Expect = 5e-10
 Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 28/130 (21%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEK----LETPLHEACRQGNAEISALLLKTNLF 56
           A      E    +++L   L    A +N+       TPLH A     A +  LLLK    
Sbjct: 165 AVIHKDAE----MVRL---LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217

Query: 57  VATLLNQERQSAFLLACRRGHVNVVKLML------NQSWLMEFEEDRDESTPLHVAISRG 110
                    ++    A  R +  + +L+               E+  D+ +P   + S  
Sbjct: 218 PTAR-MYGGRTPLGSALLRPNPILARLLRAHGAPEP-------EDGGDKLSPCSSSGSDS 269

Query: 111 KIDIVKEILK 120
             D   E  +
Sbjct: 270 DSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 1/82 (1%)

Query: 194 FNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLA 253
           F  +T DGDT  HLA+         FL         L  Q+  G T LHLA +       
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 254 EYIIKKTKVDKNCRNYTNQTAL 275
           E +                TAL
Sbjct: 62  EKLYAA-GAGVLVAERGGHTAL 82

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  118 bits (299), Expect = 4e-30
 Identities = 49/253 (19%), Positives = 89/253 (35%), Gaps = 36/253 (14%)

Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLML------N 86
                    G+       +            +  + FL AC  G    V  +L      N
Sbjct: 10  RNEQLKRWIGSETDLEPPVVKRKKTKV--KFDDGAVFLAACSSGDTEEVLRLLERGADIN 67

Query: 87  QSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV 146
                    + D  T LH A     +D+VK +++   +   Q D    +PLH A+  G +
Sbjct: 68  -------YANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYL 119

Query: 147 EITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFH 206
           +I + L++    +    N+ G TPL  A      ++L+  +       N    D +    
Sbjct: 120 DIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEV-------NRQGVDIEAARK 171

Query: 207 LALRFGKYNAFIFL----AESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKV 262
              R    +A  +L               +  + G T LH+A  +   ++ + +I+  + 
Sbjct: 172 EEERIMLRDARQWLNSGHIN-------DVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RY 223

Query: 263 DKNCRNYTNQTAL 275
           D N ++Y   T L
Sbjct: 224 DVNIKDYDGWTPL 236

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  113 bits (286), Expect = 2e-28
 Identities = 48/298 (16%), Positives = 91/298 (30%), Gaps = 79/298 (26%)

Query: 3   AATGFGHIELVTEIIKLCPQLVAAVNEKLE---TPLHEACRQGNAEISALLL-------- 51
           AA   G  E V  +++      A +N       T LH+AC   N ++   L+        
Sbjct: 46  AACSSGDTEEVLRLLERG----ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ 101

Query: 52  KTNLFVATLLNQERQSAFLLACRRGHVNVVKLML----NQSWLMEFEEDRDESTPLHVAI 107
             N         E       A   G++++ + ++    +         + +  TPL +A 
Sbjct: 102 PDN---------EGWIPLHAAASCGYLDIAEYLISQGAHVG-----AVNSEGDTPLDIAE 147

Query: 108 SRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNG 167
                ++++  +        +   +         RI   +  + L +   +       +G
Sbjct: 148 EEAMEELLQNEV-------NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH-AKSG 199

Query: 168 YTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFT 227
            T LH AA  G+ ++L+  I                         +    +         
Sbjct: 200 GTALHVAAAKGYTEVLKLLI-------------------------QARYDV--------- 225

Query: 228 GLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
              + +D  G T LH A      +    +++    D    N   QTA DV  E     
Sbjct: 226 ---NIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVADEDILGY 279

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 91.0 bits (227), Expect = 2e-20
 Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 24/197 (12%)

Query: 95  EDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLN 154
            D  +     +    G    + E   V+    +    +       A   G+ E    LL 
Sbjct: 4   ADAKQKRNEQLKRWIGSETDL-EPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLE 61

Query: 155 SKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKY 214
              D+    N +G T LHQA I+ +V +++  +  +  + N    +G    H A   G  
Sbjct: 62  RGADINYA-NVDGLTALHQACIDDNVDMVKFLV-ENGANINQPDNEGWIPLHAAASCGYL 119

Query: 215 NAFIFLAESFDFTGLLH-----QQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNY 269
           +   +L        +         +  G+T L +A      +L +  + +  VD      
Sbjct: 120 DIAEYL--------ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE---- 167

Query: 270 TNQTALDVLKESGTKEA 286
               A    +    ++A
Sbjct: 168 ---AARKEEERIMLRDA 181

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  114 bits (288), Expect = 6e-30
 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 3/155 (1%)

Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
             +H+   QG  +     L+    +    ++   +  + A   G +  V+ +L       
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63

Query: 93  FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
               ++  + L +A + G  DIV  +L+         D N   PL YA R  +V+  + L
Sbjct: 64  -ILAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 153 LNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
           L    D+  +  ++GYTP+  A   G+ K+ +   
Sbjct: 122 LARGADLTTE-ADSGYTPMDLAVALGYRKVQQVIE 155

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 99.4 bits (249), Expect = 2e-24
 Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 28/185 (15%)

Query: 100 STPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDM 159
           S  +H   ++G++D +KE L+   +   + D+    PL +AS  G +E  + LL    D 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 160 ALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG-----KY 214
            +       + L  A+  G+  I+   +       N    +G T    A+R       + 
Sbjct: 63  HIL-AKERESALSLASTGGYTDIVGLLL-ERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120

Query: 215 NAFIFLAESFDFTGLLHQ------QDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRN 268
                         LL +      +   G T + LA+     ++ + I     +     N
Sbjct: 121 --------------LLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSN 165

Query: 269 YTNQT 273
                
Sbjct: 166 LVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 83.6 bits (208), Expect = 5e-19
 Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 13/148 (8%)

Query: 134 CLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTS 193
            L +H  +  G ++  K  L    ++  + +  G+TPL  A+  G ++ +   +      
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL-EWGAD 61

Query: 194 FNCLTTDGDTVFHLALRFGKYNAFIFL----AESFDFTGLLHQQDQFGNTVLHLAILRNN 249
            + L  + ++   LA   G  +    L     +       ++  D  G T L  A+  N+
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVD-------INIYDWNGGTPLLYAVRGNH 114

Query: 250 YQLAEYIIKKTKVDKNCRNYTNQTALDV 277
            +  E ++ +   D      +  T +D+
Sbjct: 115 VKCVEALLAR-GADLTTEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 59.0 bits (144), Expect = 2e-10
 Identities = 22/120 (18%), Positives = 37/120 (30%), Gaps = 26/120 (21%)

Query: 167 GYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG-----KYNAFIFLA 221
               +HQ A  G +  L+  +       N     G T    A  FG     ++       
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRF------- 54

Query: 222 ESFDFTGLL------HQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
                  LL      H   +   + L LA       +   ++++  VD N  ++   T L
Sbjct: 55  -------LLEWGADPHILAKERESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPL 106

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  115 bits (290), Expect = 1e-29
 Identities = 32/208 (15%), Positives = 63/208 (30%), Gaps = 16/208 (7%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLE---TPLHEACRQGNAEISALLLKTNLFVATL 60
           A          E+          +    +   T   +   +G   +      +N      
Sbjct: 19  ALYTFEPRTPDELYIEE----GDIIYITDMSDTNWWKGTSKGRTGLI----PSNYVAEQ- 69

Query: 61  LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
             +   +    A +RG+++ ++  L+    +    D+  ST L+ A   G  DIV+ +  
Sbjct: 70  -AESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFT 127

Query: 121 VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHV 180
                  Q +K     LH A+  G  +I +LLL       L+ N         A      
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR-NIEKKLAFDMATNAACA 186

Query: 181 KILEAFIASSPTSFNCLTTDGDTVFHLA 208
            +L+     +         +       +
Sbjct: 187 SLLKKKQ-GTDAVRTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  113 bits (284), Expect = 7e-29
 Identities = 38/250 (15%), Positives = 71/250 (28%), Gaps = 45/250 (18%)

Query: 31  LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWL 90
           +  P  +  + G         +  +F A L   E ++   L    G +            
Sbjct: 1   MSKPPPKPVKPG---------QVKVFRA-LYTFEPRTPDELYIEEGDII----------- 39

Query: 91  MEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITK 150
                     T      S+G+  ++            +  ++   PLH A++ GN+   +
Sbjct: 40  ---YITDMSDTNWWKGTSKGRTGLIPSNY------VAEQAESIDNPLHEAAKRGNLSWLR 90

Query: 151 LLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALR 210
             L+++  +    +  G T L+ A   GH  I+E          N     GDT  H A  
Sbjct: 91  ECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149

Query: 211 FGKYNAFIFLAESFDFTGLLH-----QQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKN 265
            G  +    L        L        ++        +A       L +         + 
Sbjct: 150 KGYADIVQLL--------LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRT 200

Query: 266 CRNYTNQTAL 275
             N  +    
Sbjct: 201 LSNAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  104 bits (261), Expect = 1e-25
 Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 9/177 (5%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
            T  G   L+          VA   E ++ PLHEA ++GN       L   + V   L++
Sbjct: 52  GTSKGRTGLIPSNY------VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDK 104

Query: 64  ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRP 123
              +A   AC  GH ++V+++  Q  +   ++++   T LH A  +G  DIV+ +L    
Sbjct: 105 AGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164

Query: 124 SFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHV 180
               + +  + L    A+      + K    +     L  N   Y     + +  H 
Sbjct: 165 RTDLR-NIEKKLAFDMATNAACASLLKKKQGTDAVRTLS-NAEDYLDDEDSDLEHHH 219

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  112 bits (282), Expect = 1e-28
 Identities = 43/266 (16%), Positives = 83/266 (31%), Gaps = 68/266 (25%)

Query: 8   GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
               ++++ I     L    +   ET LH A R   ++ +  LL+               
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE--------------- 46

Query: 68  AFLLACRRGH---VNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPS 124
                         N               +D    TPLH A+S     + + +++ R +
Sbjct: 47  ---------ASADAN--------------IQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83

Query: 125 FCEQADKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQYNNNGYTPLHQAAING 178
             +    +   PL  A+R+    + + L+      N+        ++ G + LH AA   
Sbjct: 84  DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-------DDLGKSALHWAAAVN 136

Query: 179 HVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLH-----QQ 233
           +V      +  +  + +      +T   LA R G Y     L        L H       
Sbjct: 137 NVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKVL--------LDHFANRDIT 187

Query: 234 DQFGNTVLHLAILRNNYQLAEYIIKK 259
           D        +A  R ++ +   + + 
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  100 bits (253), Expect = 1e-24
 Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 46/205 (22%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEK---LETPLHEACRQGNAEISALLLKTNLFV 57
           A  +   +      K    L+   A  N +     TPLH A       +  +L++     
Sbjct: 32  AARYSRSD----AAKR---LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR--- 81

Query: 58  ATLLN---QERQSAFLLACRRGHVNVVKLML------NQSWLMEFEEDRDESTPLHVAIS 108
           AT L+    +  +  +LA R     +++ ++      N         D    + LH A +
Sbjct: 82  ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-------AVDDLGKSALHWAAA 134

Query: 109 RGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQ 162
              +D    +LK   +   Q +     PL  A+R G+ E  K+LL      +        
Sbjct: 135 VNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLLDHFANRDIT------ 187

Query: 163 YNNNGYTPLHQAAINGHVKILEAFI 187
            ++    P   A    H  I+    
Sbjct: 188 -DHMDRLPRDIAQERMHHDIVRLLD 211

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 95.2 bits (238), Expect = 1e-22
 Identities = 38/157 (24%), Positives = 55/157 (35%), Gaps = 27/157 (17%)

Query: 130 DKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQYNNNGYTPLHQAAINGHVKIL 183
           D+     LH A+R    +  K LL      N +       +N G TPLH A       + 
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLEASADANIQ-------DNMGRTPLHAAVSADAQGVF 74

Query: 184 EAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLH-----QQDQFGN 238
           +  I +  T  +    DG T   LA R         L        +         D  G 
Sbjct: 75  QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL--------INSHADVNAVDDLGK 126

Query: 239 TVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
           + LH A   NN   A  ++K    +K+ +N   +T L
Sbjct: 127 SALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPL 162

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 66.3 bits (163), Expect = 1e-12
 Identities = 25/138 (18%), Positives = 41/138 (29%), Gaps = 16/138 (11%)

Query: 144 GNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDT 203
               +    +     +  Q +  G T LH AA        +  +  +    N     G T
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASADANIQDNMGRT 60

Query: 204 VFHLALRFGKYNAFIFLAESFDFTGLLH------QQDQFGNTVLHLAILRNNYQLAEYII 257
             H A+       F  L        + +       +   G T L LA       + E +I
Sbjct: 61  PLHAAVSADAQGVFQIL--------IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 112

Query: 258 KKTKVDKNCRNYTNQTAL 275
                D N  +   ++AL
Sbjct: 113 NS-HADVNAVDDLGKSAL 129

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  112 bits (283), Expect = 2e-28
 Identities = 44/218 (20%), Positives = 85/218 (38%), Gaps = 21/218 (9%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEK---LETPLHEACRQGNAEISALLLKTNLFVATL 60
           AT +G  E   E+++        V +      T LH A      ++    +     V  L
Sbjct: 16  ATQYGIYERCRELVEAG----YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71

Query: 61  LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEF-----EEDRDESTPLHVAISRGKIDIV 115
                 +    A R+GH+++V        LM++       D +  + +H+A   G   IV
Sbjct: 72  GGDLNSTPLHWATRQGHLSMVVQ------LMKYGADPSLIDGEGCSCIHLAAQFGHTSIV 125

Query: 116 KEILKVRPSFCEQADKNRCLPLHYASRIGN-VEITKLLLNSKPDMALQYNNNGYTPLHQA 174
             ++       +  D+N   PL +A+   + V+ T+LLL     + L    +  T LH A
Sbjct: 126 AYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWA 184

Query: 175 AINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG 212
            + G+  ++   +  +  + +     G++   LA +  
Sbjct: 185 VLAGNTTVISLLL-EAGANVDAQNIKGESALDLAKQRK 221

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  110 bits (277), Expect = 1e-27
 Identities = 50/238 (21%), Positives = 96/238 (40%), Gaps = 33/238 (13%)

Query: 62  NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKV 121
           +       + A + G     + ++   + +  + D++  T LH A    +ID+VK  +  
Sbjct: 6   DDYSTWDIVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISK 64

Query: 122 RPSFCEQADKNRCL------PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAA 175
                  A  ++        PLH+A+R G++ +   L+    D +L  +  G + +H AA
Sbjct: 65  G------AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAA 117

Query: 176 INGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLL----- 230
             GH  I+   I +     + +  +G T    A              S D T LL     
Sbjct: 118 QFGHTSIVAYLI-AKGQDVDMMDQNGMTPLMWAAYRTH---------SVDPTRLLLTFNV 167

Query: 231 --HQQDQF-GNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
             +  D++  NT LH A+L  N  +   +++    + + +N   ++ALD+ K+     
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVW 224

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  108 bits (273), Expect = 4e-27
 Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 22/195 (11%)

Query: 3   AATGFGHIELVTEIIKLCPQLV---AAVNEKL----ETPLHEACRQGNAEISALLLKTNL 55
            A     I+    ++K     +   A V++       TPLH A RQG+  +   L+K   
Sbjct: 48  WAAINNRID----LVKY---YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG- 99

Query: 56  FVA--TLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRG-KI 112
             A  +L++ E  S   LA + GH ++V  ++ +   ++   D++  TPL  A  R   +
Sbjct: 100 --ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYRTHSV 156

Query: 113 DIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLH 172
           D  + +L    S       ++   LH+A   GN  +  LLL +  ++  Q N  G + L 
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ-NIKGESALD 215

Query: 173 QAAINGHVKILEAFI 187
            A    +V ++    
Sbjct: 216 LAKQRKNVWMINHLQ 230

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 99.4 bits (249), Expect = 8e-24
 Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 30/195 (15%)

Query: 94  EEDRDESTPLHVAISRGKIDIVKEILK----VRPSFCEQADKNRCLPLHYASRIGNVEIT 149
             D   +  +  A   G  +  +E+++    V      Q DK     LH+A+    +++ 
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYDV-----RQPDKENVTLLHWAAINNRIDLV 58

Query: 150 KLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLAL 209
           K  ++    +     +   TPLH A   GH+ ++   +       + +  +G +  HLA 
Sbjct: 59  KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM-KYGADPSLIDGEGCSCIHLAA 117

Query: 210 RFGKYNAFIFLAESFDFTGLL-------HQQDQFGNTVLHLAILRNNY-QLAEYIIKKTK 261
           +FG                 L          DQ G T L  A  R +       ++    
Sbjct: 118 QFG----------HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF-N 166

Query: 262 VDKNCRNYTN-QTAL 275
           V  N  +  +  TAL
Sbjct: 167 VSVNLGDKYHKNTAL 181

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 82.9 bits (206), Expect = 3e-18
 Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 127 EQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF 186
              D      +  A++ G  E  + L+ +  D+    +    T LH AAIN  + +++ +
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQP-DKENVTLLHWAAINNRIDLVKYY 61

Query: 187 IASSPTSFNCLTTD-GDTVFHLALRFGKYNAFIFL----AESFDFTGLLHQQDQFGNTVL 241
           I S     + L  D   T  H A R G  +  + L    A+           D  G + +
Sbjct: 62  I-SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD-------PSLIDGEGCSCI 113

Query: 242 HLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
           HLA    +  +  Y+I K   D +  +    T L
Sbjct: 114 HLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPL 146

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 75.9 bits (188), Expect = 1e-15
 Identities = 31/162 (19%), Positives = 66/162 (40%), Gaps = 16/162 (9%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEKLE---TPLHEACRQGNAEISALLLKTNLFV 57
           AT  GH+     ++     L+   A  +       + +H A + G+  I A L+     V
Sbjct: 83  ATRQGHLS----MVVQ---LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135

Query: 58  ATLLNQERQSAFLLACRRGH-VNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVK 116
             +++Q   +  + A  R H V+  +L+L  +  +   +   ++T LH A+  G   ++ 
Sbjct: 136 -DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194

Query: 117 EILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPD 158
            +L+   +  +  +      L  A +  NV +   L  ++  
Sbjct: 195 LLLEAGANV-DAQNIKGESALDLAKQRKNVWMINHLQEARQA 235

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  109 bits (274), Expect = 5e-28
 Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 8/158 (5%)

Query: 32  ETPLHEACRQGNAEISALLLKTNLFVATL--LNQERQSAFLLACRRGHVNVVKLMLNQSW 89
              +H+   QG     A  ++       +   ++E  +  + A   G + VV+ +L    
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQE---NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 90  LMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEIT 149
             +    +   + L +A S+G  DIVK +L        + D N   PL YA    +V+  
Sbjct: 61  DPQ-LLGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCV 118

Query: 150 KLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
           K+LL S  D  ++  ++GY  +  A   G+  + +   
Sbjct: 119 KMLLESGADPTIE-TDSGYNSMDLAVALGYRSVQQVIE 155

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  101 bits (254), Expect = 2e-25
 Identities = 37/203 (18%), Positives = 68/203 (33%), Gaps = 49/203 (24%)

Query: 68  AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK----VRP 123
           +      +G +  +   + Q  ++    D +  TPL  A + G+I +V+ +L+       
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-- 62

Query: 124 SFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKIL 183
              +   K R   L  A   G  +I K+LL+   D+    + NG TPL  A    HVK +
Sbjct: 63  ---QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEY-DWNGGTPLLYAVHGNHVKCV 118

Query: 184 EAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHL 243
           +  +                         +  A                +   G   + L
Sbjct: 119 KMLL-------------------------ESGADP------------TIETDSGYNSMDL 141

Query: 244 AILRNNYQLAEYIIKK-TKVDKN 265
           A+      + + I     K+ +N
Sbjct: 142 AVALGYRSVQQVIESHLLKLLQN 164

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 80.5 bits (200), Expect = 5e-18
 Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 10/159 (6%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLE---TPLHEACRQGNAEISALLLKTNLFVATL 60
               G +  +   I+        +N   E   TPL  A   G   +   LL+       L
Sbjct: 10  LAAQGEMLYLATRIEQE----NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QL 64

Query: 61  LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
           L + R+SA  LAC +G+ ++VK++L+    +  E D +  TPL  A+    +  VK +L+
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLE 123

Query: 121 VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDM 159
                      +    +  A  +G   + +++ +    +
Sbjct: 124 SGADP-TIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 57.8 bits (141), Expect = 4e-10
 Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 13/114 (11%)

Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL----A 221
                +HQ A  G +  L   I       N    +G T    A   G+     FL    A
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRI-EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 222 ESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
           +            +   + L LA  +    + + ++    VD N  ++   T L
Sbjct: 61  D-------PQLLGKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPL 106

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  109 bits (274), Expect = 6e-28
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 21/169 (12%)

Query: 28  NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ---ERQSAFLLACRRGHVNVVKLM 84
           + +    +   CR+GNA    L L         LNQ      S    ACR G   VV+++
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNT---ENDLNQGDDHGFSPLHWACREGRSAVVEML 58

Query: 85  L------NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLH 138
           +      N         +R + TPLH+A S G  DIV+++L+ +       +++  +PLH
Sbjct: 59  IMRGARIN-------VMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLH 110

Query: 139 YASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
           YA   G  ++ + L+ +   +++  N  G  P+ +A       + E   
Sbjct: 111 YACFWGQDQVAEDLVANGALVSIC-NKYGEMPVDKAKAPLRELLRERAE 158

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  100 bits (252), Expect = 6e-25
 Identities = 34/175 (19%), Positives = 58/175 (33%), Gaps = 27/175 (15%)

Query: 96  DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL-- 153
             +    +      G    V+  L    +   Q D +   PLH+A R G   + ++L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 154 ----NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLAL 209
               N         N    TPLH AA +GH  I++  +       N +   G+   H A 
Sbjct: 62  GARINVM-------NRGDDTPLHLAASHGHRDIVQKLL-QYKADINAVNEHGNVPLHYAC 113

Query: 210 RFGKYNAFIFLAESFDFTGLLH-----QQDQFGNTVLHLAILRNNYQLAEYIIKK 259
            +G+      L        + +       +++G   +  A       L E   K 
Sbjct: 114 FWGQDQVAEDL--------VANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 91.0 bits (227), Expect = 1e-21
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 13/161 (8%)

Query: 129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188
                   +    R GN    +L L++  +   Q +++G++PLH A   G   ++E  I 
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI- 59

Query: 189 SSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL----AESFDFTGLLHQQDQFGNTVLHLA 244
                 N +    DT  HLA   G  +    L    A+       ++  ++ GN  LH A
Sbjct: 60  MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-------INAVNEHGNVPLHYA 112

Query: 245 ILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
                 Q+AE ++       +  N   +  +D  K    + 
Sbjct: 113 CFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKAPLREL 152

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  109 bits (274), Expect = 3e-27
 Identities = 34/246 (13%), Positives = 79/246 (32%), Gaps = 35/246 (14%)

Query: 52  KTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGK 111
           + N  + +    E    +L+  + GH          +     +   +  TP   A  +  
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIA----ADVVSEYETPWWTAARKAD 57

Query: 112 IDIVKEILK---VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGY 168
              + ++L+   V     +  D+N    L + + +G+ +  +LL  +  D+  +    G 
Sbjct: 58  EQALSQLLEDRDV-----DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL 112

Query: 169 TPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG---------------- 212
           T LH AA     +++EA +             G T   LA                    
Sbjct: 113 TALHMAAGYVRPEVVEALV-ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 171

Query: 213 -KYNAFIFLAESFDFTGL--LHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNY 269
            +    +   + F++  +  + ++   G  V +L   ++              +   ++ 
Sbjct: 172 LEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVH-VAEDVAKD- 229

Query: 270 TNQTAL 275
             +  L
Sbjct: 230 -YEDGL 234

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 67.2 bits (165), Expect = 1e-12
 Identities = 21/207 (10%), Positives = 52/207 (25%), Gaps = 45/207 (21%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLE---TPLHEACRQGNAEISALLLKTNLFVATL 60
           A      + ++++++        V+   E   T L      G+ +   LL +    +   
Sbjct: 52  AARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106

Query: 61  LNQERQSAFLLACRRGHVNVVKLML------NQSWLMEFEEDRDESTPLHVAISRGKIDI 114
             +   +A  +A       VV+ ++               ED    T L +A    K   
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVELGADIE-------VEDERGLTALELAREILKTTP 159

Query: 115 V------------KEILKVRPSFCEQ---------ADKNRCLPLHYASRIGNVEITKLLL 153
                        ++++ V      +                  +        +   +  
Sbjct: 160 KGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKG 219

Query: 154 NSKPDMALQYNNNGYTPLHQAAINGHV 180
               +   +   +    L  A     +
Sbjct: 220 VHVAEDVAK---DYEDGLEYAVAESVI 243

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 98.4 bits (246), Expect = 1e-23
 Identities = 47/219 (21%), Positives = 73/219 (33%), Gaps = 42/219 (19%)

Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
           +PL +A     +  + ++LK       Q        LH A+   N+E   +L+ + P++ 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 161 LQYNN----NGYTPLHQAAINGHVKILEAFIA------------SSPTSFNCLTTDGDTV 204
            +        G T LH A IN +V ++ A +A                  + L   G+  
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124

Query: 205 FHLALRFGKYNAFIFLAESFDFTGLL-------HQQDQFGNTVLHLAILRNNYQLAEYII 257
              A   G          S +   LL         QD  GNTVLH+ IL+ N   A  + 
Sbjct: 125 LSFAACVG----------SEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMY 174

Query: 258 K---------KTKVDKNCRNYTNQTALDVLKESGTKEAF 287
                       K  +   N    T   +    G    F
Sbjct: 175 NLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMF 213

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 92.3 bits (230), Expect = 2e-21
 Identities = 42/213 (19%), Positives = 76/213 (35%), Gaps = 34/213 (15%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEK---LETPLHEACRQGNAEISALLLK----TNLF 56
           A     ++ +++++K        V+++    ET LH A    N E + +L++        
Sbjct: 10  AAKENDVQALSKLLKFEG---CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66

Query: 57  VATLLNQERQSAFLLACRRGHVNVVKLMLNQ------------SWLMEFEEDRDESTPLH 104
             T    E Q+A  +A    +VN+V+ +L +                          PL 
Sbjct: 67  PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126

Query: 105 VAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEI----TKLLL------N 154
            A   G  +IV+ +++       Q D      LH      N         LLL      +
Sbjct: 127 FAACVGSEEIVRLLIEHGADIRAQ-DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185

Query: 155 SKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
            K    +  NN G TP   A + G++ + +  +
Sbjct: 186 LKSLELVP-NNQGLTPFKLAGVEGNIVMFQHLM 217

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 18/125 (14%)

Query: 167 GYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL----AE 222
             +PL  AA    V+ L   +       +     G+T  H+A  +    A + L     E
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 223 SFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK------------TKVDKNCRNYT 270
                  +  +   G T LH+A++  N  L   ++ +                 +   Y 
Sbjct: 63  LVFEP--MTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYY 120

Query: 271 NQTAL 275
            +  L
Sbjct: 121 GEHPL 125

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  104 bits (262), Expect = 1e-25
 Identities = 35/273 (12%), Positives = 75/273 (27%), Gaps = 55/273 (20%)

Query: 33  TPLHEACRQGNAEISALLLK--TNLFVATLLNQERQSAF--------LLACRRGHVNVVK 82
             L     +G  E    LL+           +   + +         +L  + G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 83  LMLNQSWLMEF----------EEDRDESTPLHVAISRGKIDIVKEILK------------ 120
            +L                  +E     + LH+AI +  +  VK +++            
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 121 VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMAL--QYNNNGYTPLHQAAING 178
                         LPL  A+     ++   LL +    A     ++ G T LH   +  
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA 183

Query: 179 HVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGN 238
                               +  ++   + +  G       L  +     L    +  G 
Sbjct: 184 D------------------NSPENSALVIHMYDGLLQMGARLCPT---VQLEEISNHQGL 222

Query: 239 TVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTN 271
           T L LA      ++  +I+++        ++ +
Sbjct: 223 TPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 91.0 bits (226), Expect = 9e-21
 Identities = 37/223 (16%), Positives = 65/223 (29%), Gaps = 44/223 (19%)

Query: 8   GHIELVTEIIKLCPQLVAAVNEKLETPLHEA---CRQGNAEISALLLKTNLFVATLL--- 61
           G +E +    K             +T L +A    + G       LL+ +          
Sbjct: 20  GLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79

Query: 62  -------NQERQSAFLLACRRGHVNVVKLMLNQ------------SWLMEFEEDRDESTP 102
                    +  SA  +A  +  +  VKL++                  +         P
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139

Query: 103 LHVAISRGKIDIVKEILKVRPSFC--EQADKNRCLPLHYASRI----------------G 144
           L +A    + D+V  +L+        E  D      LH    I                G
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199

Query: 145 NVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
            +++   L  +     +  N+ G TPL  AA  G ++I    +
Sbjct: 200 LLQMGARLCPTVQLEEIS-NHQGLTPLKLAAKEGKIEIFRHIL 241

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 75.6 bits (186), Expect = 1e-15
 Identities = 26/200 (13%), Positives = 62/200 (31%), Gaps = 43/200 (21%)

Query: 8   GHIELVTEIIKLCPQLV-------AAVNEKL---ETPLHEACRQGNAEISALLLK----- 52
           G    +  ++++            A   ++     + LH A  + + +   LL++     
Sbjct: 57  GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV 116

Query: 53  ----TNLFVATLLNQER---QSAFLLACRRGHVNVVKLMLNQS----------------- 88
                  F            +    LA      +VV  +L                    
Sbjct: 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176

Query: 89  -WLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVE 147
             L+   ++  E++ L + +  G + +   +        E ++     PL  A++ G +E
Sbjct: 177 HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQL-EEISNHQGLTPLKLAAKEGKIE 235

Query: 148 ITKLLLN--SKPDMALQYNN 165
           I + +L        A  +++
Sbjct: 236 IFRHILQREFSGAAAHHHHH 255

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  101 bits (255), Expect = 2e-25
 Identities = 43/179 (24%), Positives = 66/179 (36%), Gaps = 36/179 (20%)

Query: 25  AAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLM 84
           A  N + +  L EA + G+ E    L          +   + +    A     V+VV+ +
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61

Query: 85  L------NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK----VRPSFCEQADKNRC 134
           L      +        +D+    PLH A S G  ++ + ++K    V       AD  + 
Sbjct: 62  LQHGADVH-------AKDKGGLVPLHNACSYGHYEVAELLVKHGAVV-----NVADLWKF 109

Query: 135 LPLHYASRIGNVEITKLLL------NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
            PLH A+  G  EI KLLL        K       N +G TPL     +G   I +   
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGADPTKK-------NRDGNTPLDLVK-DGDTDIQDLLR 160

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 95.5 bits (239), Expect = 3e-23
 Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 28/175 (16%)

Query: 96  DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL-- 153
           + +    L  A   G ++ VK++  V+   C   +  +  PLH+A+    V + + LL  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 154 ----NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLAL 209
               ++K       +  G  PLH A   GH ++ E  +       N       T  H A 
Sbjct: 65  GADVHAK-------DKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLHEAA 116

Query: 210 RFGKYNAFIFLAESFDFTGLLH-----QQDQFGNTVLHLAILRNNYQLAEYIIKK 259
             GKY     L        L H     ++++ GNT L L     +  + + +   
Sbjct: 117 AKGKYEICKLL--------LQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGD 162

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  104 bits (261), Expect = 2e-25
 Identities = 42/271 (15%), Positives = 76/271 (28%), Gaps = 66/271 (24%)

Query: 32  ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAF-------------LLACRRGHV 78
              + +A  Q N +    LL    F+     +   S F             +L    G  
Sbjct: 14  RRSIFDAVAQSNCQELESLLP---FLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQN 70

Query: 79  NVVKLMLNQSWLMEF----------EEDRDESTPLHVAISRGKIDIVKEILK-------- 120
           + + L+L+ +   +           +      T LH+AI R  + +V  +++        
Sbjct: 71  DTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA 130

Query: 121 -----VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMAL--QYNNNGYTPLHQ 173
                 + +          LPL  A+    + I K LL +    A     ++ G T LH 
Sbjct: 131 ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHA 190

Query: 174 AAINGHVKILE---------------AFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFI 218
                   +                 A +  +          G T   LA   GK     
Sbjct: 191 LVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL- 249

Query: 219 FLAESFDFTGLLHQQDQFGNTVLHLAILRNN 249
                      + Q++       H A   ++
Sbjct: 250 ---------AYILQREIHEPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 92.2 bits (229), Expect = 4e-21
 Identities = 39/255 (15%), Positives = 69/255 (27%), Gaps = 58/255 (22%)

Query: 8   GHIELVTEIIKLCPQLV---AAVNEKL----ETPLHEA---CRQGNAEISALLLK----- 52
            + + +  ++    +          K     +T L +A      G  +  ALLL      
Sbjct: 24  SNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83

Query: 53  --TNLFVATLLNQER---QSAFLLACRRGHVNVVKLMLNQ-------------SWLMEFE 94
                FV           Q+A  +A  R ++ +V L++                      
Sbjct: 84  DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRP 143

Query: 95  EDRDESTPLHVAISRGKIDIVKEILKVRPSFC--EQADKNRCLPLHYASRIGNVEITKLL 152
                  PL +A    ++ IVK +L+           D      LH    + +  +    
Sbjct: 144 GFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTK 203

Query: 153 ---------------LNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCL 197
                          L+    +    N  G TPL  AA +G + +L   +          
Sbjct: 204 FVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE------- 256

Query: 198 TTDGDTVFHLALRFG 212
                   H A    
Sbjct: 257 -IHEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 88.3 bits (219), Expect = 1e-19
 Identities = 31/230 (13%), Positives = 59/230 (25%), Gaps = 48/230 (20%)

Query: 94  EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ-ADKNRCL------PLHYAS---RI 143
                +   +  A+++     ++ +L       ++  D            L  A      
Sbjct: 8   PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHN 67

Query: 144 GNVEITKLLLNSKPDM----------ALQYNNNGYTPLHQAAINGHVKILEAFIA----- 188
           G  +   LLL+                      G T LH A    ++ ++   +      
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV 127

Query: 189 --------SSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTV 240
                      T        G+    LA    +     FL ++      +  +D  GNTV
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV 187

Query: 241 LHLAILRNNYQLAEYI---------------IKKTKVDKNCRNYTNQTAL 275
           LH  +   +  +                   +  T   +   N    T L
Sbjct: 188 LHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPL 237

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 86.4 bits (214), Expect = 4e-19
 Identities = 36/212 (16%), Positives = 63/212 (29%), Gaps = 48/212 (22%)

Query: 8   GHIELVTEIIK------LCPQLV-AAVNEKL---ETPLHEACRQGNAEISALLLK----- 52
           G  + +  ++          Q V A+  +     +T LH A  + N  +  LL++     
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV 127

Query: 53  --------TNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLM--EFEEDRDESTP 102
                                +    LA     + +VK +L  SW        D   +T 
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV 187

Query: 103 LHVAISRGK---------IDIVKEILKV------RPSFCEQADKNRCLPLHYASRIGNVE 147
           LH  +               +  EIL +           E  ++    PL  A+  G + 
Sbjct: 188 LHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG 247

Query: 148 ITKLLLNSKPDMALQYNNNGYTPLHQAAINGH 179
           +   +L        Q   +     H AA + H
Sbjct: 248 VLAYIL--------QREIHEPECRHAAAHHHH 271

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  101 bits (254), Expect = 5e-25
 Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 28/211 (13%)

Query: 62  NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKV 121
             E  +    A +R    V +++ + ++ ++ E D + +TPL++A+    I+I K ++  
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVD-EVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 122 RPSFCEQADKNRCLPLHYASRIGNVEITKLLL-------NSKPDMALQYNNNGYTPLHQA 174
                 Q +     P  YA   G  EI   +L       N         N  G   L  A
Sbjct: 62  GADINLQ-NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH-------NRYGGNALIPA 113

Query: 175 AINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLL---- 230
           A  GH+  ++  +       +     G T    A+   + N         D   LL    
Sbjct: 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ-----LYQDIVKLLMENG 168

Query: 231 ---HQQDQFGNTVLHLAILRNNYQLAEYIIK 258
                +D  G T +  A  +   ++++ + +
Sbjct: 169 ADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  100 bits (253), Expect = 8e-25
 Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 30/201 (14%)

Query: 3   AATGFGHIELVTEIIKLCPQLVAAVNEK---LETPLHEACRQGNAEISALLL-------- 51
           AA      ++   +          V+E      TPL+ A    + EI+  L+        
Sbjct: 12  AANQRDTKKVKEILQDTT----YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67

Query: 52  KTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGK 111
           + +            S +L A  +G   ++  ML  +     + +R     L  A  +G 
Sbjct: 68  QNS---------ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH 118

Query: 112 IDIVKEILKVRPSFCEQADKNRCLPLHYASRI-----GNVEITKLLLNSKPDMALQYNNN 166
           ID VK +L+      +  +      L  A  +        +I KLL+ +  D +++ +N+
Sbjct: 119 IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK-DNS 177

Query: 167 GYTPLHQAAINGHVKILEAFI 187
           G T +  A   G+ +I +   
Sbjct: 178 GRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 94.1 bits (235), Expect = 3e-22
 Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 38/180 (21%)

Query: 96  DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNS 155
             +    L  A  R    + + +        ++ D     PL+ A    ++EI K L++ 
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 156 KPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYN 215
             D+ LQ N+   +P   A   G  +IL   +                           +
Sbjct: 62  GADINLQ-NSISDSPYLYAGAQGRTEILAYMLKH----------------------ATPD 98

Query: 216 AFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
                         L++ +++G   L  A  + +    + +++  + D + +N    TAL
Sbjct: 99  --------------LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL 144

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 99.9 bits (250), Expect = 1e-24
 Identities = 21/170 (12%), Positives = 49/170 (28%), Gaps = 17/170 (10%)

Query: 23  LVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVK 82
           + +    +         + G++            V      E ++ +  A R+     + 
Sbjct: 6   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALS 61

Query: 83  LML-----NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPL 137
            +L     +         D +  T L      G    V+ + +       +  +     L
Sbjct: 62  QLLEDRDVD-------AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL 114

Query: 138 HYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
           H A+     E+ + L+    D+ ++ +  G T L  A            +
Sbjct: 115 HMAAGYVRPEVVEALVELGADIEVE-DERGLTALELAREILKTTPKGNPM 163

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 93.7 bits (234), Expect = 2e-22
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 68  AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK---VRPS 124
            +L+  + GH          +     +   +  TP   A  +     + ++L+   V   
Sbjct: 17  EYLIEWKDGHSPSWVPSSYIA----ADVVSEYETPWWTAARKADEQALSQLLEDRDV--- 69

Query: 125 FCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
             +  D+N    L + + +G+ +  +LL  +  D+  +    G T LH AA     +++E
Sbjct: 70  --DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127

Query: 185 AFIASSPTSFNCLTTDGDTVFHLALRFGK 213
           A +             G T   LA    K
Sbjct: 128 ALV-ELGADIEVEDERGLTALELAREILK 155

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 74.1 bits (183), Expect = 1e-15
 Identities = 23/165 (13%), Positives = 46/165 (27%), Gaps = 23/165 (13%)

Query: 128 QADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
           +      +      + G+            D+     +   TP   AA     + L   +
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLL 64

Query: 188 ASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLL-------HQQDQFGNTV 240
                  + +  +G T        G                L        H+  + G T 
Sbjct: 65  EDR--DVDAVDENGRTALLFVAGLGSDKC----VRL-----LAEAGADLDHRDMRGGLTA 113

Query: 241 LHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
           LH+A      ++ E +++    D    +    TAL++ +E     
Sbjct: 114 LHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILKTT 157

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 64.4 bits (158), Expect = 3e-12
 Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 39/159 (24%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLE---TPLHEACRQGNAEISALLLKTNLFVATL 60
           A      + ++++++        V+   E   T L      G+ +   LL +    +   
Sbjct: 51  AARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 105

Query: 61  LNQERQSAFLLACRRGHVNVVKLML------NQSWLMEFEEDRDESTPLHVAISRGKIDI 114
             +   +A  +A       VV+ ++               ED    T L +A    K   
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALVELGADIE-------VEDERGLTALELAREILKTTP 158

Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
                                P+ +  RIG  ++  +L 
Sbjct: 159 KG------------------NPMQFGRRIGLEKVINVLE 179

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 97.5 bits (244), Expect = 4e-24
 Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 40/173 (23%)

Query: 31  LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLML----- 85
           L   L EA R G  +   +L+       T  +    S   LA + GH +  +++L     
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 86  -NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK----VRPSFCEQADKNRCLPLHYA 140
            +          + + TPLH+A S G  +IV+ +LK    V        D  +   LH+A
Sbjct: 60  RD-------ARTKVDRTPLHMAASEGHANIVEVLLKHGADV-----NAKDMLKMTALHWA 107

Query: 141 SRIGNVEITKLLL------NSKPDMALQYNNNGYTPLHQAAINGH---VKILE 184
           +   + E+ +LL+      +++       +    T    +  NG+    +IL+
Sbjct: 108 TEHNHQEVVELLIKYGADVHTQ-------SKFCKTAFDISIDNGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 92.4 bits (231), Expect = 3e-22
 Identities = 44/194 (22%), Positives = 70/194 (36%), Gaps = 53/194 (27%)

Query: 68  AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCE 127
             L A R G  + V++++       F  D   ++PLH+A   G     + +L+   S   
Sbjct: 5   KLLEAARAGQDDEVRILMANG--APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 128 QADKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQYNNNGYTPLHQAAINGHVK 181
           +  K    PLH A+  G+  I ++LL      N+K       +    T LH A  + H +
Sbjct: 63  R-TKVDRTPLHMAASEGHANIVEVLLKHGADVNAK-------DMLKMTALHWATEHNHQE 114

Query: 182 ILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVL 241
           ++E  I                         KY A +            H Q +F  T  
Sbjct: 115 VVELLI-------------------------KYGADV------------HTQSKFCKTAF 137

Query: 242 HLAILRNNYQLAEY 255
            ++I   N  LAE 
Sbjct: 138 DISIDNGNEDLAEI 151

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 89.4 bits (223), Expect = 3e-21
 Identities = 42/194 (21%), Positives = 73/194 (37%), Gaps = 53/194 (27%)

Query: 98  DESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL---- 153
           D    L  A   G+ D V+ ++     F    D     PLH A++ G+   T++LL    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 154 --NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRF 211
             +++            TPLH AA  GH  I+E  +                        
Sbjct: 59  SRDAR-------TKVDRTPLHMAASEGHANIVEVLL------------------------ 87

Query: 212 GKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTN 271
            K+ A +            + +D    T LH A   N+ ++ E +IK    D + ++   
Sbjct: 88  -KHGADV------------NAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFC 133

Query: 272 QTALDVLKESGTKE 285
           +TA D+  ++G ++
Sbjct: 134 KTAFDISIDNGNED 147

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 39.7 bits (94), Expect = 5e-04
 Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 45/121 (37%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEK---LETPLHEACRQGNAEISALLLKTNLFVATL 60
           A   GH  +V  ++K      A VN K     T LH A    + E+  LL+K        
Sbjct: 74  AASEGHANIVEVLLKHG----ADVNAKDMLKMTALHWATEHNHQEVVELLIK-------- 121

Query: 61  LNQERQSAFLLACRRG-HVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEIL 119
                          G  V+               + +   T   ++I  G  D+  EIL
Sbjct: 122 --------------YGADVH--------------TQSKFCKTAFDISIDNGNEDLA-EIL 152

Query: 120 K 120
           +
Sbjct: 153 Q 153

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =   99 bits (250), Expect = 5e-24
 Identities = 27/187 (14%), Positives = 60/187 (32%), Gaps = 23/187 (12%)

Query: 32  ETPLHEACRQGNAEISALLL----KTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
           +  L    R    +  +  +    +         N    +  L +   G  ++V+ ++ +
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRVKF------NPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 88  SWLMEFEEDRDESTPLHVAISRGKIDIVKEILK----VRPSFCEQADKNRCLPLHYASRI 143
                   + +  T LH A+  G  +IVK +++    V       AD +   PLH A+  
Sbjct: 60  VDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-----NAADSDGWTPLHCAASC 113

Query: 144 GNVEITKLLLNSKPDMALQYNNNGY--TPLHQAAINGHVKILEAFIASSPTSFNCLTTDG 201
            NV++ K L+ S   +     ++        +    G+ +  +            +    
Sbjct: 114 NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY-GVQEKMGIMNKGV 172

Query: 202 DTVFHLA 208
                  
Sbjct: 173 IYALWDY 179

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 96.1 bits (240), Expect = 1e-22
 Identities = 35/202 (17%), Positives = 60/202 (29%), Gaps = 29/202 (14%)

Query: 96  DRDESTPLHVAISRGKIDIVKEIL----KVRPSFCEQADKNRCLPLHYASRIGNVEITKL 151
           +      L             E +    +V+       +      L  +S  G  ++ + 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVK------FNPLPLALLLDSSLEGEFDLVQR 55

Query: 152 LLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSF----NCLTTDGDTVFHL 207
           ++    D +L  N+ G T LH A   GH +I++  +      F    N   +DG T  H 
Sbjct: 56  IIYEVDDPSLP-NDEGITALHNAVCAGHTEIVKFLV-----QFGVNVNAADSDGWTPLHC 109

Query: 208 ALRFGKYNAFIFL----AESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVD 263
           A          FL    A  F  T      D          +     Q ++++    +  
Sbjct: 110 AASCNNVQVCKFLVESGAAVFAMT----YSDMQTAADKCEEMEEGYTQCSQFLYGV-QEK 164

Query: 264 KNCRNYTNQTALDVLKESGTKE 285
               N     AL   +     E
Sbjct: 165 MGIMNKGVIYALWDYEPQNDDE 186

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 90.4 bits (225), Expect = 1e-20
 Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 19/188 (10%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKL--ETPLHEACRQGNAEISALLLKT----NLFV 57
                  +  +E I         V         L ++  +G  ++   ++      +L  
Sbjct: 12  GKRTNLRKTGSERIAHG----MRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL-- 65

Query: 58  ATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKE 117
               N E  +A   A   GH  +VK ++     +    D D  TPLH A S   + + K 
Sbjct: 66  ---PNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKF 121

Query: 118 ILKV--RPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAA 175
           +++          +D             G  + ++ L   +  M +  N      L    
Sbjct: 122 LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIM-NKGVIYALWDYE 180

Query: 176 INGHVKIL 183
                ++ 
Sbjct: 181 PQNDDELP 188

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 67.6 bits (166), Expect = 7e-13
 Identities = 26/190 (13%), Positives = 51/190 (26%), Gaps = 29/190 (15%)

Query: 3   AATGFGHIELVTEIIKLCPQLVAAVNEK---LETPLHEACRQGNAEISALLL-------- 51
            ++  G  +LV  II      V   +       T LH A   G+ EI   L+        
Sbjct: 43  DSSLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98

Query: 52  KTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ--SWLMEFEEDRDESTPLHVAISR 109
             +         +  +    A    +V V K ++    +       D   +      +  
Sbjct: 99  ADS---------DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE 149

Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYT 169
           G     + +  V+       +K     L       + E+   +        +   +    
Sbjct: 150 GYTQCSQFLYGVQEKM-GIMNKGVIYALWDYEPQNDDEL--PMKEGDCMTIIHREDEDEI 206

Query: 170 PLHQAAINGH 179
               A +N  
Sbjct: 207 EWWWARLNDK 216

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 98.2 bits (246), Expect = 5e-24
 Identities = 35/245 (14%), Positives = 77/245 (31%), Gaps = 71/245 (28%)

Query: 25  AAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLM 84
           + +++  E        +   +    L           +   ++  ++AC  G  N +  +
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYR-------DSYNRTPLMVACMLGMENAIDKL 54

Query: 85  L------NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLH 138
           +              ++D + ST L  A+   ++ I +++L    +   + D +   PL 
Sbjct: 55  VENFDKLE-------DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-DFSGKTPLM 106

Query: 139 YASRIGNVEITKLLL------NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPT 192
           ++   G  E++  LL      N +       N  G TPL  A+  G  +I++  +     
Sbjct: 107 WSIIFGYSEMSYFLLEHGANVNDR-------NLEGETPLIVASKYGRSEIVKKLL----- 154

Query: 193 SFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQL 252
                               +  A I              +D  G T    A +    ++
Sbjct: 155 --------------------ELGADI------------SARDLTGLTAEASARIFGRQEV 182

Query: 253 AEYII 257
            +   
Sbjct: 183 IKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 91.3 bits (228), Expect = 2e-21
 Identities = 35/238 (14%), Positives = 76/238 (31%), Gaps = 73/238 (30%)

Query: 61  LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVK---- 116
           +++  +    +   +     +  + N         D    TPL VA   G  + +     
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRN-------YRDSYNRTPLMVACMLGMENAIDKLVE 56

Query: 117 ---EILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQYNNNG 167
              ++        E  D      L +A +   + I + LL      N+K       + +G
Sbjct: 57  NFDKL--------EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-------DFSG 101

Query: 168 YTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFT 227
            TPL  + I G+ ++    +                         ++ A +         
Sbjct: 102 KTPLMWSIIFGYSEMSYFLL-------------------------EHGANV--------- 127

Query: 228 GLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
              + ++  G T L +A      ++ + +++    D + R+ T  TA    +  G +E
Sbjct: 128 ---NDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASARIFGRQE 181

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 43/139 (30%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEK---LETPLHEACRQGNAEISALLL------ 51
           A     +     I +    L+   + VN K    +TPL  +   G +E+S  LL      
Sbjct: 75  AVKNNRLG----IAEK---LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127

Query: 52  --KTNLFVATLLNQERQSAFLLACRRGHVNVVKLML------NQSWLMEFEEDRDESTPL 103
             +         N E ++  ++A + G   +VK +L      +         D    T  
Sbjct: 128 NDR---------NLEGETPLIVASKYGRSEIVKKLLELGADIS-------ARDLTGLTAE 171

Query: 104 HVAISRGKIDIVKEILKVR 122
             A   G+ +++K   +VR
Sbjct: 172 ASARIFGRQEVIKIFTEVR 190

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 97.4 bits (244), Expect = 7e-24
 Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 40/173 (23%)

Query: 33  TPLHEACRQGNAEISALLL--------KTNLFVATLLNQERQSAFLLACRRGHVNVVKLM 84
             L EA R G  +   +L+        +              +   LA   GH+ +V+++
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADVNAEDA---------SGWTPLHLAAFNGHLEIVEVL 66

Query: 85  L------NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK----VRPSFCEQADKNRC 134
           L      N         D    TPL +A   G ++IV+ +LK    V        D    
Sbjct: 67  LKNGADVN-------AVDHAGMTPLRLAALFGHLEIVEVLLKNGADV-----NANDMEGH 114

Query: 135 LPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
            PLH A+  G++EI ++LL +  D+  Q +  G T    +  NG+  + E   
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 94.0 bits (235), Expect = 1e-22
 Identities = 52/204 (25%), Positives = 81/204 (39%), Gaps = 64/204 (31%)

Query: 68  AFLLACRRGHVNVVKLML------NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKV 121
             L A R G  + V++++      N        ED    TPLH+A   G ++IV+ +LK 
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVN-------AEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 122 RPSFCEQADKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQYNNNGYTPLHQAA 175
                   D     PL  A+  G++EI ++LL      N+        +  G+TPLH AA
Sbjct: 70  GADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN-------DMEGHTPLHLAA 121

Query: 176 INGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQ 235
           + GH++I+E  +                         K  A +            + QD+
Sbjct: 122 MFGHLEIVEVLL-------------------------KNGADV------------NAQDK 144

Query: 236 FGNTVLHLAILRNNYQLAEYIIKK 259
           FG T   ++I   N  LAE + K 
Sbjct: 145 FGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 56.2 bits (137), Expect = 1e-09
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 15/119 (12%)

Query: 162 QYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA 221
            + ++    L +AA  G    +   + ++    N     G T  HLA   G       L 
Sbjct: 9   HHGSDLGKKLLEAARAGRDDEVRILM-ANGADVNAEDASGWTPLHLAAFNGHLEIVEVL- 66

Query: 222 ESFDFTGLLH-----QQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
                  L +       D  G T L LA L  + ++ E ++K    D N  +    T L
Sbjct: 67  -------LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHTPL 117

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 95.6 bits (239), Expect = 2e-23
 Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 19/164 (11%)

Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL------N 154
             L  A +RG +  V+ +L       +  ++     L      G+  I   LL      N
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN 62

Query: 155 SKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKY 214
            +       + +G +P+H AA  G +  L+  +       N     G    HLA++ G  
Sbjct: 63  VQ-------DTSGTSPVHDAARTGFLDTLKVLV-EHGADVNVPDGTGALPIHLAVQEGHT 114

Query: 215 NAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
               FLA   D    LH++D  G T L LA+ R    L + +  
Sbjct: 115 AVVSFLAAESD----LHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 92.9 bits (232), Expect = 2e-22
 Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 39/180 (21%)

Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
             L  A  +G+ +           V  LL++E            H +             
Sbjct: 4   DRLSGAAARGDVQE----------VRRLLHRE----------LVHPD------------- 30

Query: 93  FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
              +R   T L V    G   I  E+LK   S     D +   P+H A+R G ++  K+L
Sbjct: 31  -ALNRFGKTALQVM-MFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVL 87

Query: 153 LNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG 212
           +    D+ +  +  G  P+H A   GH  ++    A S    +     G T   LAL+ G
Sbjct: 88  VEHGADVNVP-DGTGALPIHLAVQEGHTAVVSFLAAES--DLHRRDARGLTPLELALQRG 144

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 77.1 bits (191), Expect = 7e-17
 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 15/156 (9%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKT--NLFVATLL 61
           A   G ++ V  ++        A+N   +T L      G+  I+  LLK   +  V    
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQ--- 64

Query: 62  NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK- 120
           +    S    A R G ++ +K+++     +    D   + P+H+A+  G   +V  +   
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 121 --VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLN 154
             +      + D     PL  A + G  ++  +L  
Sbjct: 124 SDL-----HRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 54.7 bits (133), Expect = 4e-09
 Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 13/113 (11%)

Query: 167 GYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL----AE 222
               L  AA  G V+ +   +       + L   G T   +   FG     + L    A 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGAS 60

Query: 223 SFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
                   + QD  G + +H A         + +++    D N  + T    +
Sbjct: 61  -------PNVQDTSGTSPVHDAARTGFLDTLKVLVEH-GADVNVPDGTGALPI 105

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 17/91 (18%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEKLE---TPLHEACRQGNAEISALLLK-TNLF 56
           A   G ++     +K+   LV   A VN        P+H A ++G+  + + L   ++L 
Sbjct: 75  AARTGFLD----TLKV---LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH 127

Query: 57  VATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
                +    +   LA +RG  ++V ++   
Sbjct: 128 RR---DARGLTPLELALQRGAQDLVDILQGH 155

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 97.6 bits (243), Expect = 3e-23
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 38/241 (15%)

Query: 33  TPLHEACRQGNAEISALLL--------KTNLFVATLLNQERQSAFLLACRRGHVNVVKLM 84
              + A      E+   +L                    + ++A   AC  GH  +V+ +
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQ---------DSRTALHWACSAGHTEIVEFL 59

Query: 85  L------NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLH 138
           L      N       ++D    +PLH+A S G  +IVK +L          ++N C PLH
Sbjct: 60  LQLGVPVN-------DKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLH 111

Query: 139 YASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLT 198
           YA+     EI  +LL    +   + ++   T +H+AA  G++K++   +     S N   
Sbjct: 112 YAASKNRHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKGNLKMVHILL-FYKASTNIQD 169

Query: 199 TDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
           T+G+T  HLA    +     FL         ++ +++   T L +A  +    L    + 
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQ---GASIYIENKEEKTPLQVA--KGGLGLILKRLA 224

Query: 259 K 259
           +
Sbjct: 225 E 225

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 95.3 bits (237), Expect = 2e-22
 Identities = 40/194 (20%), Positives = 78/194 (40%), Gaps = 19/194 (9%)

Query: 98  DESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL---- 153
                 ++A S    ++ + IL  +     + D++    LH+A   G+ EI + LL    
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 154 --NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRF 211
             N K       ++ G++PLH AA  G  +I++A +       N +  +G T  H A   
Sbjct: 65  PVNDK-------DDAGWSPLHIAASAGXDEIVKALLVKG-AHVNAVNQNGCTPLHYAASK 116

Query: 212 GKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTN 271
            ++   + L    +       +D +  T +H A  + N ++   ++   K   N ++   
Sbjct: 117 NRHEIAVML---LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEG 172

Query: 272 QTALDVLKESGTKE 285
            T L +  +    E
Sbjct: 173 NTPLHLACDEERVE 186

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 93.4 bits (232), Expect = 7e-22
 Identities = 57/215 (26%), Positives = 80/215 (37%), Gaps = 16/215 (7%)

Query: 71  LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK----VRPSFC 126
           LA       + + +L    L     D+D  T LH A S G  +IV+ +L+    V     
Sbjct: 13  LAYSGKLDELKERILADKSLAT-RTDQDSRTALHWACSAGHTEIVEFLLQLGVPV----- 66

Query: 127 EQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF 186
              D     PLH A+  G  EI K LL     +    N NG TPLH AA     +I    
Sbjct: 67  NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVML 125

Query: 187 IASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAIL 246
           +     + +       T  H A   G       L     +    + QD  GNT LHLA  
Sbjct: 126 L-EGGANPDAKDHYDATAMHRAAAKGNLKMVHIL---LFYKASTNIQDTEGNTPLHLACD 181

Query: 247 RNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKES 281
               + A++++ +        N   +T L V K  
Sbjct: 182 EERVEEAKFLVTQ-GASIYIENKEEKTPLQVAKGG 215

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 83.4 bits (206), Expect = 2e-18
 Identities = 36/232 (15%), Positives = 85/232 (36%), Gaps = 26/232 (11%)

Query: 132 NRCLPLHYASRIGNVEITKLLL------NSKPDMALQYNNNGYTPLHQAAINGHVKILEA 185
           +  +  + A      E+ + +L                + +  T LH A   GH +I+E 
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRT-------DQDSRTALHWACSAGHTEIVEF 58

Query: 186 FIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAI 245
            +       N     G +  H+A   G       L         ++  +Q G T LH A 
Sbjct: 59  LL-QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK---GAHVNAVNQNGCTPLHYAA 114

Query: 246 LRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE------AFSSELQSVEEPNG 299
            +N +++A  +++    + + +++ + TA+      G  +       + +     +    
Sbjct: 115 SKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN 173

Query: 300 SPKHLQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQNARNTIILVAVLI 351
           +P HL   ++  + +  +      +    +N+ ++  LQ A+  + L+   +
Sbjct: 174 TPLHLACDEE--RVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRL 223

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 58.7 bits (142), Expect = 6e-10
 Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 23/188 (12%)

Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES 223
             +     + A      ++ E  + +  +       D  T  H A   G      FL   
Sbjct: 4   CVSNIMICNLAYSGKLDELKERIL-ADKSLATRTDQDSRTALHWACSAGHTEIVEFL--- 59

Query: 224 FDFTGLLH-----QQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVL 278
                L        +D  G + LH+A      ++ + ++ K     N  N    T L   
Sbjct: 60  -----LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYA 113

Query: 279 KESGTKE------AFSSELQSVEEPNGSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNEL 332
                 E         +   + +  + +  H    K     ++  +   YK+  + ++  
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG--NLKMVHILLFYKASTNIQDTE 171

Query: 333 QREALQNA 340
               L  A
Sbjct: 172 GNTPLHLA 179

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 95.1 bits (238), Expect = 3e-23
 Identities = 30/182 (16%), Positives = 65/182 (35%), Gaps = 46/182 (25%)

Query: 27  VNEKLETPLHEACRQGNAEISALLL--------KTNLFVATLLNQERQSAFLLACRRGHV 78
           + E     L  A  +G+ E    LL        +             ++A  +  + G+ 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNG---------FGRTALQVM-KLGNP 50

Query: 79  NVVKLML------NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKN 132
            + + +L      +        +DR     +H A   G +D ++ +L+ +     + D  
Sbjct: 51  EIARRLLLRGANPD-------LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNE 102

Query: 133 RCLPLHYASRIGNVEITKLLL-------NSKPDMALQYNNNGYTPLHQAAINGHVKILEA 185
             LPLH A++ G++ + + L+         +       N+ G T    A + G  +++  
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHR-------NHKGDTACDLARLYGRNEVVSL 155

Query: 186 FI 187
             
Sbjct: 156 MQ 157

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 86.7 bits (216), Expect = 4e-20
 Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 48/192 (25%)

Query: 98  DESTPLHVAISRGKIDIVKEILK----VRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
                L  A +RG ++ +  +L+    V        +      L     +GN EI + LL
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNV-----NAQNGFGRTALQVMK-LGNPEIARRLL 57

Query: 154 NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
               +  L+ +  G+  +H AA  G +  L+  +                         +
Sbjct: 58  LRGANPDLK-DRTGFAVIHDAARAGFLDTLQTLL-------------------------E 91

Query: 214 YNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQT 273
           + A +            + +D  GN  LHLA    + ++ E+++K T  +   RN+   T
Sbjct: 92  FQADV------------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139

Query: 274 ALDVLKESGTKE 285
           A D+ +  G  E
Sbjct: 140 ACDLARLYGRNE 151

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 70.9 bits (175), Expect = 9e-15
 Identities = 34/171 (19%), Positives = 57/171 (33%), Gaps = 44/171 (25%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEK---LETPLHEACRQGNAEISALLL------ 51
           A   G +E     +     L+     VN +     T L    + GN EI+  LL      
Sbjct: 12  AAARGDLE----QLTS---LLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANP 63

Query: 52  --KTNLFVATLLNQERQSAFLLACRRGHVNVVKLML------NQSWLMEFEEDRDESTPL 103
             K              +    A R G ++ ++ +L      N        ED + + PL
Sbjct: 64  DLKDR---------TGFAVIHDAARAGFLDTLQTLLEFQADVN-------IEDNEGNLPL 107

Query: 104 HVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLN 154
           H+A   G + +V+ ++K   S     +         A   G  E+  L+  
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 92.5 bits (231), Expect = 2e-22
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 71  LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD 130
           +A  +G +  V+ +L         +D    TPLH A + G + +V+ +L+ +        
Sbjct: 16  IASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT-G 73

Query: 131 KNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
                PLH A++ G+V+I KLLL+         N  G  P+          +L 
Sbjct: 74  YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV-NIFGLRPVDYTDDESMKSLLL 126

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 80.9 bits (201), Expect = 2e-18
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 25/140 (17%)

Query: 129 ADKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQYNNNGYTPLHQAAINGHVKI 182
            +      LH AS  G++   + LL      N K       ++ G+TPLH+A  +GH+K+
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK-------DHAGWTPLHEACNHGHLKV 58

Query: 183 LEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL----AESFDFTGLLHQQDQFGN 238
           +E  +       N      D+  H A + G  +    L    A         +  + FG 
Sbjct: 59  VELLL-QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS-------RNAVNIFGL 110

Query: 239 TVLHLAILRNNYQLAEYIIK 258
             +      +   L     K
Sbjct: 111 RPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 63.2 bits (155), Expect = 3e-12
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 15/127 (11%)

Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES 223
           N+ G T LH A+I G +  +E  +  + +  N     G T  H A   G       L   
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLL-QNGSDPNVKDHAGWTPLHEACNHGHLKVVELL--- 62

Query: 224 FDFTGLLH-----QQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVL 278
                L H           ++ LH A    +  + + ++      +N  N      +D  
Sbjct: 63  -----LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYT 116

Query: 279 KESGTKE 285
            +   K 
Sbjct: 117 DDESMKS 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 91.7 bits (229), Expect = 2e-22
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 11/121 (9%)

Query: 68  AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK----VRP 123
            F+ A + G ++ VK  + +   +          PLH A   G+++I++ +L     +  
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADI-- 66

Query: 124 SFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKIL 183
                 DK+   PL  A   G+V   KLLL+   D  ++   +G T            +L
Sbjct: 67  ---NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTAFEATDNQAIKALL 122

Query: 184 E 184
           +
Sbjct: 123 Q 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 72.8 bits (180), Expect = 9e-16
 Identities = 26/156 (16%), Positives = 44/156 (28%), Gaps = 51/156 (32%)

Query: 136 PLHYASRIGNVEITKLLL------NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189
              +A + G+++  K  +      N            G  PLH AA  G ++ILE  +  
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDVNRT-------LEGGRKPLHYAADCGQLEILEFLL-- 60

Query: 190 SPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNN 249
                                     A I            +  D+   T L  A+   +
Sbjct: 61  -----------------------LKGADI------------NAPDKHHITPLLSAVYEGH 85

Query: 250 YQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
               + ++ K   DK  +     TA +       K 
Sbjct: 86  VSCVKLLLSK-GADKTVKGPDGLTAFEATDNQAIKA 120

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 92.9 bits (232), Expect = 2e-22
 Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 17/163 (10%)

Query: 26  AVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLML 85
           +  E     L  A  +G  E    LL+         N   +    +    G   V +L+L
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMMM-GSARVAELLL 64

Query: 86  NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK----VRPSFCEQADKNRCLPLHYAS 141
                    +    + P+H A   G +D +  + +    +     +  D    LP+  A 
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL-----DVRDAWGRLPVDLAE 119

Query: 142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
            +G+ ++ + L  +           G       A  G   I +
Sbjct: 120 ELGHRDVARYLRAAAGG------TRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 92.2 bits (230), Expect = 4e-22
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 15/124 (12%)

Query: 71  LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD 130
            A  RG V  V+ +L          +     P+ V    G   + + +L         A+
Sbjct: 18  TAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVM-MMGSARVAELLLLHG------AE 69

Query: 131 KN------RCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
            N         P+H A+R G ++   +L  +   + ++ +  G  P+  A   GH  +  
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR-DAWGRLPVDLAEELGHRDVAR 128

Query: 185 AFIA 188
              A
Sbjct: 129 YLRA 132

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 69.8 bits (172), Expect = 2e-14
 Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 34/155 (21%)

Query: 136 PLHYASRIGNVEITKLLL------NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189
            L  A+  G VE  + LL      N+        N+ G  P+      G  ++ E  +  
Sbjct: 15  WLATAAARGRVEEVRALLEAGANPNAP-------NSYGRRPIQVMM-MGSARVAELLLLH 66

Query: 190 SPTSFNCLTTDGDTV-FHLALRFGKYNAFIFLAESFDFTGLLHQQ-------DQFGNTVL 241
                NC      T   H A R G            D   +LH+        D +G   +
Sbjct: 67  G-AEPNCADPATLTRPVHDAAREGFL----------DTLVVLHRAGARLDVRDAWGRLPV 115

Query: 242 HLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALD 276
            LA    +  +A Y+           N+    A +
Sbjct: 116 DLAEELGHRDVARYLRAA-AGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 15/119 (12%)

Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL--- 220
                  L  AA  G V+ + A + +   + N   + G     + +  G       L   
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMMM-GSARVAELLLLH 66

Query: 221 -AESFDFTGLLHQQDQFGNTV-LHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDV 277
            AE        +  D    T  +H A           + +      + R+   +  +D+
Sbjct: 67  GAE-------PNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDL 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 15/133 (11%)

Query: 62  NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKV 121
                +    A  RG V  V+ +L          +R    P+ V    G   + + +L  
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVM-MMGSAQVAELLLLH 66

Query: 122 RPSFCEQADKN------RCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAA 175
                  A+ N         P+H A+R G ++   +L  +   + +  +  G  P+  A 
Sbjct: 67  G------AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVC-DAWGRLPVDLAE 119

Query: 176 INGHVKILEAFIA 188
             GH  I     A
Sbjct: 120 EQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 80.2 bits (199), Expect = 3e-18
 Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 41/167 (24%)

Query: 94  EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
                    L  A +RG+++ V+++L+         ++    P+      G+ ++ +LLL
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLL 64

Query: 154 NSKPDMALQYNNNGYT-PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG 212
               +     +    T P+H AA  G +  L     +                      G
Sbjct: 65  LHGAEPNCA-DPATLTRPVHDAAREGFLDTLVVLHRA----------------------G 101

Query: 213 KYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
                   A        L   D +G   + LA  + +  +A Y+   
Sbjct: 102 --------AR-------LDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 74.4 bits (184), Expect = 4e-16
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 24/146 (16%)

Query: 25  AAVNEK---LETPLHEACRQGNAEISALLLKTNLFVATL--LNQERQSAFLLACRRGHVN 79
             ++      +  L  A  +G  E    LL+     A    LN+  +    +    G   
Sbjct: 3   PGIHMLGGSSDAGLATAAARGQVETVRQLLEAG---ADPNALNRFGRRPIQVMMM-GSAQ 58

Query: 80  VVKLML------NQSWLMEFEEDRDEST-PLHVAISRGKIDIVKEILKVRPSFCEQADKN 132
           V +L+L      N         D    T P+H A   G +D +  + +      +  D  
Sbjct: 59  VAELLLLHGAEPN-------CADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAW 110

Query: 133 RCLPLHYASRIGNVEITKLLLNSKPD 158
             LP+  A   G+ +I + L  +  D
Sbjct: 111 GRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 59.0 bits (144), Expect = 7e-11
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 15/123 (12%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEK---LETPLHEACRQGNAEISALLLKTNLFV 57
           A   G +E V    +    L+   A  N        P+      G+A+++ LLL      
Sbjct: 19  AAARGQVETV----RQ---LLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEP 70

Query: 58  ATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKE 117
                         A R G ++ + ++      ++   D     P+ +A  +G  DI + 
Sbjct: 71  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARY 129

Query: 118 ILK 120
           +  
Sbjct: 130 LHA 132

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 91.6 bits (229), Expect = 2e-22
 Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 15/123 (12%)

Query: 71  LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD 130
           LA R GH+ VVKL+L     +   +D++  TPLH+A   G +++VK +L+         D
Sbjct: 8   LAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKD 65

Query: 131 KNRCLPLHYASRIGNVEITKLLL------NSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
           KN   PLH A+R G++E+ KLLL      N+K       + NG TPLH AA NGH+++++
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-------DKNGRTPLHLAARNGHLEVVK 118

Query: 185 AFI 187
             +
Sbjct: 119 LLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 72.8 bits (180), Expect = 8e-16
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 31/137 (22%)

Query: 136 PLHYASRIGNVEITKLLL------NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189
           PLH A+R G++E+ KLLL      N+K       + NG TPLH AA NGH+++++  +  
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAK-------DKNGRTPLHLAARNGHLEVVKLLL-E 56

Query: 190 SPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLL-------HQQDQFGNTVLH 242
           +    N    +G T  HLA R G            +   LL       + +D+ G T LH
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNG----------HLEVVKLLLEAGADVNAKDKNGRTPLH 106

Query: 243 LAILRNNYQLAEYIIKK 259
           LA    + ++ + +++ 
Sbjct: 107 LAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 62.4 bits (153), Expect = 4e-12
 Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 45/154 (29%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLE---TPLHEACRQGNAEISALLLKTNLFVATL 60
           A   GH+E+V  +++      A VN K +   TPLH A R G+ E+  LLL+        
Sbjct: 9   AARNGHLEVVKLLLEAG----ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-------- 56

Query: 61  LNQERQSAFLLACRRG-HVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEIL 119
                          G  VN               +D++  TPLH+A   G +++VK +L
Sbjct: 57  --------------AGADVN--------------AKDKNGRTPLHLAARNGHLEVVKLLL 88

Query: 120 KVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
           +         DKN   PLH A+R G++E+ KLLL
Sbjct: 89  EAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 55.4 bits (135), Expect = 1e-09
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 19/117 (16%)

Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFD 225
           NG TPLH AA NGH+++++  +  +    N    +G T  HLA R G            +
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNG----------HLE 49

Query: 226 FTGLL-------HQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
              LL       + +D+ G T LHLA    + ++ + +++    D N ++   +T L
Sbjct: 50  VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPL 105

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 38.5 bits (91), Expect = 8e-04
 Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 30/98 (30%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEK---LETPLHEACRQGNAEISALLL------ 51
           A   GH+E    ++KL   L+   A VN K     TPLH A R G+ E+  LLL      
Sbjct: 42  AARNGHLE----VVKL---LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 94

Query: 52  --KTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
             K             ++   LA R GH+ VVKL+L  
Sbjct: 95  NAKDK---------NGRTPLHLAARNGHLEVVKLLLEA 123

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 95.5 bits (237), Expect = 8e-22
 Identities = 45/265 (16%), Positives = 82/265 (30%), Gaps = 19/265 (7%)

Query: 28  NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
             KLE  L         E+   L   +    +      Q    ++       V     N 
Sbjct: 60  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 119

Query: 88  SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV- 146
              +    D   +TPLH   S   +++VK ++K   +     D      L  A +  N  
Sbjct: 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKSVNNY 178

Query: 147 ---EITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVK-----------ILEAFIASSPT 192
                  LL    P + L+ ++   T LH   I   +            IL  +I     
Sbjct: 179 DSGTFEALLDYLYPCLILE-DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN 237

Query: 193 SFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTG-LLHQQDQFGNTVLHLAILRNNYQ 251
                 T+            + ++ +   +       +L+ QD  G+T L++A    N  
Sbjct: 238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS 297

Query: 252 LAEYIIKKTKVDKNCRNYTNQTALD 276
           + + ++     D    N +    +D
Sbjct: 298 IVDALLDY-GADPFIANKSGLRPVD 321

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 71.2 bits (174), Expect = 1e-13
 Identities = 35/189 (18%), Positives = 67/189 (35%), Gaps = 19/189 (10%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNA---EISALLLKTNLFVATL 60
            T   ++ELV  ++K         +   E+ L +A +  N         LL        L
Sbjct: 138 LTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 196

Query: 61  LNQERQSAF----LLACRRGHVNVVKLMLNQ--SWLME-----FEEDRDESTPLHVAISR 109
            +   ++      + +   G     K  L+    W+++      +   +E        + 
Sbjct: 197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG 256

Query: 110 GKIDIVKEILKVRPSFCE---QADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNN 166
            + D + E L ++          D N    L+ A+R+GN+ I   LL+   D  +  N +
Sbjct: 257 ERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA-NKS 315

Query: 167 GYTPLHQAA 175
           G  P+   A
Sbjct: 316 GLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 70.1 bits (171), Expect = 3e-13
 Identities = 24/208 (11%), Positives = 64/208 (30%), Gaps = 18/208 (8%)

Query: 94  EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
           E+       L   +     ++   +     +   +   +     H +      E+     
Sbjct: 58  EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFP 117

Query: 154 NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG- 212
           N++ ++ +  + +G TPLH      ++++++  +    ++       G++    A++   
Sbjct: 118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCLVKAVKSVN 176

Query: 213 --KYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNY------------QLAEYIIK 258
                 F  L +       L  +D    T+LH  I+ +               L  +I+K
Sbjct: 177 NYDSGTFEALLDYLYPC--LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234

Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKEA 286
           K            ++  +          
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSI 262

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 92.1 bits (229), Expect = 4e-21
 Identities = 39/242 (16%), Positives = 70/242 (28%), Gaps = 44/242 (18%)

Query: 72  ACRRGHVNVVKLMLNQSWLM---EFEEDRDESTPLHVA---ISRGKIDIVKEILKVRPSF 125
               G   ++  +L     +   EF E     T L  A   +S G+ D +  +L +    
Sbjct: 16  GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75

Query: 126 CEQA----------DKNRCLPLHYASRIGNVEITKLLL------NSK-------PDMALQ 162
                                LH A         +LL+      +++       P     
Sbjct: 76  GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGG 135

Query: 163 YNNNGYTPLHQAAINGHVKILEAFIA--SSPTSFNCLTTDGDTVFHLALRFGKYNAFI-- 218
           Y   G  PL  AA      I+                 + G+TV H  +           
Sbjct: 136 YFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTK 195

Query: 219 FLAESFDF-----------TGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCR 267
           F+ + +D            T L    +  G + L +A       + ++II++   D    
Sbjct: 196 FVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAH 255

Query: 268 NY 269
           ++
Sbjct: 256 HH 257

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 87.1 bits (216), Expect = 2e-19
 Identities = 37/230 (16%), Positives = 72/230 (31%), Gaps = 50/230 (21%)

Query: 8   GHIELVTEIIKLCPQLVAAVNEKL-------ETPLHEA---CRQGNAEISALLL---KTN 54
           G  + +  ++         + ++        +T L +A      G  +   +LL   +  
Sbjct: 16  GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75

Query: 55  LFVATLLN-------QERQSAFLLACRRGHVNVVKLMLNQ-------------SWLMEFE 94
             +   +N          Q+A  +A  R   + V+L++ +                 E  
Sbjct: 76  GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGG 135

Query: 95  EDRDESTPLHVAISRGKIDIVKEILKVRPSFC--EQADKNRCLPLHYASRIGN------- 145
                  PL +A    +  IV  + +         + D      LH    I +       
Sbjct: 136 YFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTK 195

Query: 146 --VEITKLLL------NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
              ++  LLL          ++    NN+G +PL  AA  G + I +  I
Sbjct: 196 FVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 91.2 bits (226), Expect = 4e-20
 Identities = 31/285 (10%), Positives = 77/285 (27%), Gaps = 37/285 (12%)

Query: 8   GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKT-NLFVATLLNQERQ 66
             ++ +  ++    ++V  +  +       A   G+  +   L +     +  ++  E  
Sbjct: 106 SALDTLCLLLT-SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY 164

Query: 67  SAFLLACRRGHVNVVKLMLNQSWLMEFE--EDRDESTPLHVAISRGKIDIVKEILKVRPS 124
            AF LA   GH++V+  +   +        +  +       A+ RG  +++  +L     
Sbjct: 165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-- 222

Query: 125 FCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
                         +    G   +   +        +      +     +  +G   ++ 
Sbjct: 223 ----VMLAYA--EIHEFEYGEKYVNPFIA-----RHVNRLKEMHDAFKLSNPDGVFDLVT 271

Query: 185 AFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGL-----LHQQDQFGNT 239
                           G  +    +R         +       G+             N 
Sbjct: 272 KSECL----------QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANE 321

Query: 240 VLHLAILRNNYQLAEYIIKKTKVDKNCRN---YTN--QTALDVLK 279
           +L LA+   N      ++    V    +    Y N     LD+  
Sbjct: 322 LLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRA 366

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 82.7 bits (204), Expect = 3e-17
 Identities = 35/208 (16%), Positives = 60/208 (28%), Gaps = 45/208 (21%)

Query: 8   GHIELVTEIIKLCPQLVAA-VNEKLETPLHEAC-RQGNAEISALLLKTNLFVATLLNQER 65
           GH+ ++  + +L P    A +  +       A   +G+  +   LL   + +A       
Sbjct: 174 GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY------ 227

Query: 66  QSAFLLACRRGHVNVVKLMLNQS-------------------WLMEFEEDRDESTPLHVA 106
             A +     G   V   +                        L+   E       L   
Sbjct: 228 --AEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNL 285

Query: 107 ISRGKIDIVKEILKVRPSFC--------EQADKNRCLPLHYASRIGNVEITKLLLNSKPD 158
           I R    ++ + ++   S               +    L  A R+GN     LLL+    
Sbjct: 286 IRRNDEVLL-DDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV 344

Query: 159 MALQYNNN-------GYTPLHQAAINGH 179
           +AL   NN       G   L   A+  H
Sbjct: 345 LALTKANNYYINETGGRLDLRAVALEHH 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 78.8 bits (194), Expect = 6e-16
 Identities = 26/214 (12%), Positives = 59/214 (27%), Gaps = 44/214 (20%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAA-VNEKLETPLHEACRQGNAEISALLLKT--NLFVATL 60
           A   GH+ ++  + +L P  + A +  +       A   G+  +   L +       A +
Sbjct: 135 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 194

Query: 61  LNQERQSAFLLACRRGHVNVVKLMLNQS--------------------WLMEFEED-RDE 99
             +   +    A  RGH NV+  +L+                      ++       ++ 
Sbjct: 195 QAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEM 254

Query: 100 STPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDM 159
                ++   G  D+V           +         L    R  +  +   +       
Sbjct: 255 HDAFKLSNPDGVFDLVT----------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304

Query: 160 ALQY-------NNNGYTPLHQAAINGH---VKIL 183
            ++          +    L  A   G+     +L
Sbjct: 305 GIKALAPTATIPGDANELLRLALRLGNQGACALL 338

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 27/153 (17%), Positives = 44/153 (28%), Gaps = 9/153 (5%)

Query: 61  LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGK---IDIVKE 117
                Q   LL     H N     L   W    ++         VA   G    +D +  
Sbjct: 57  TKNMEQVRQLLCLYYAHYNRNAKQL---WSDAHKKGIKSEVICFVAAITGCSSALDTLCL 113

Query: 118 ILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQ-YNNNGYTPLHQAAI 176
           +L       +            A+  G++ +   L    P   +       Y     AA 
Sbjct: 114 LLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE 172

Query: 177 NGHVKILEAFIASSPT-SFNCLTTDGDTVFHLA 208
           NGH+ +L      +PT +   +  +    F  A
Sbjct: 173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 24/167 (14%), Positives = 46/167 (27%), Gaps = 10/167 (5%)

Query: 43  NAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTP 102
             +    L+   L+   L      +  L      +   + + L  +          E   
Sbjct: 13  ENDPQLRLIPWILWE-NLFQHFISANELSLMTLSYKEAIHIFLPGT-------KNMEQVR 64

Query: 103 LHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQ 162
             + +     +   + L           +  C           ++   LLL S   + + 
Sbjct: 65  QLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI 124

Query: 163 YNNNGYTPLHQAAINGHVKILEAFIASSPTSFNC-LTTDGDTVFHLA 208
                Y     AA NGH+ +L      +PT     +  +    F LA
Sbjct: 125 -QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA 170

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 88.1 bits (219), Expect = 5e-20
 Identities = 30/188 (15%), Positives = 56/188 (29%), Gaps = 17/188 (9%)

Query: 68  AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK----VRP 123
             L A   G + VV+  + +      + + +  T LH AI      IV  ++     V  
Sbjct: 24  LLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSIVDFLITAGANV-- 80

Query: 124 SFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAI--NGHVK 181
                 D +   PLH A+   +  I   L+     +     ++G T   +      G+  
Sbjct: 81  ---NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYAD 137

Query: 182 ILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVL 241
                      S   + +             ++   +   E    T  + ++D    T  
Sbjct: 138 CATYLA-DVEQSMGLMNSGAVYALWDYSA--EFGDELSFREGESVT--VLRRDGPEETDW 192

Query: 242 HLAILRNN 249
             A L   
Sbjct: 193 WWAALHGQ 200

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 81.5 bits (202), Expect = 9e-18
 Identities = 27/193 (13%), Positives = 50/193 (25%), Gaps = 29/193 (15%)

Query: 3   AATGFGHIELVTEIIKLCPQLVAAVNEK---LETPLHEACRQGNAEISALLL-------- 51
            A   G +E+V + +K     +   ++      T LH A    N  I   L+        
Sbjct: 27  DAALTGELEVVQQAVKE----MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNS 82

Query: 52  KTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVA--ISR 109
             +            +    A       +   ++     +      D +T          
Sbjct: 83  PDS---------HGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE 133

Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYT 169
           G  D    +  V  S     +      L   S     E+       +    L+ +    T
Sbjct: 134 GYADCATYLADVEQSM-GLMNSGAVYALWDYSAEFGDEL--SFREGESVTVLRRDGPEET 190

Query: 170 PLHQAAINGHVKI 182
               AA++G    
Sbjct: 191 DWWWAALHGQEGY 203

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 22/137 (16%)

Query: 150 KLLLNS--KPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHL 207
           + +L     P  A +   N    L  AA+ G +++++  +       +    +G T  H 
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAV-KEMNDPSQPNEEGITALHN 60

Query: 208 ALRFGKYNAFIFLAESFDFTGLL-------HQQDQFGNTVLHLAILRNNYQLAEYIIKKT 260
           A+             ++     L       +  D  G T LH A   N+  +   +++  
Sbjct: 61  AICGA----------NYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH- 109

Query: 261 KVDKNCRNYTN-QTALD 276
                    ++  TA +
Sbjct: 110 GAAIFATTLSDGATAFE 126

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 13/119 (10%)

Query: 3   AATGFGHIELVTEIIKLCPQLVAAVNEK----LETPLHEA--CRQGNAEISALLLKTNLF 56
            A       +   +++      AA+         T   +    R+G A+ +  L      
Sbjct: 93  CAASCNDTVICMALVQHG----AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS 148

Query: 57  VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIV 115
           +  L+N     A           +         +     D  E T    A   G+   V
Sbjct: 149 M-GLMNSGAVYALWDYSAEFGDEL--SFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 83.6 bits (207), Expect = 6e-19
 Identities = 23/196 (11%), Positives = 43/196 (21%), Gaps = 39/196 (19%)

Query: 97  RDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNR--------CLPLHYASRIGNVEI 148
             E   +  A   G  +   E+ +      +  +              L   +     +I
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFE------KGYEDKESVLKSNILYDVLRNNNDEARYKI 57

Query: 149 TKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSF--------NCLTTD 200
           +  L+N   D+  +    G T        G   I                      L   
Sbjct: 58  SMFLINKGADIKSR-TKEGTTLFFPLFQGGGNDITGTTEL---CKIFLEKGADITALYKP 113

Query: 201 GDTVFHLALRFGKYNA--------FIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQL 252
              V    +     +          IF          L  +D++G T L           
Sbjct: 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ----LLIKDKWGLTALEFVKRCQKPIA 169

Query: 253 AEYIIKKTKVDKNCRN 268
            + +        N + 
Sbjct: 170 LKMMEDY-IKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 82.0 bits (203), Expect = 2e-18
 Identities = 22/185 (11%), Positives = 44/185 (23%), Gaps = 48/185 (25%)

Query: 33  TPLHEACRQGNAEISALLL-----------KTNLFVATLLNQERQSAFLLACRRGHVNVV 81
             +  A   G  E    L            K+N+    L N                 + 
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRN---------NNDEARYKIS 58

Query: 82  KLML------NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ------A 129
             ++                 ++ +T        G  DI       +  F E+       
Sbjct: 59  MFLINKGADIK-------SRTKEGTTLFFPLFQGGGNDITGTTELCK-IFLEKGADITAL 110

Query: 130 DKNRCLPLHYASRIGNVE------ITKLLLNSK-PDMALQYNNNGYTPLHQAAINGHVKI 182
            K   + +        V+      + KL+ +     + ++ +  G T L           
Sbjct: 111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK-DKWGLTALEFVKRCQKPIA 169

Query: 183 LEAFI 187
           L+   
Sbjct: 170 LKMME 174

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 75.1 bits (185), Expect = 6e-16
 Identities = 23/165 (13%), Positives = 46/165 (27%), Gaps = 20/165 (12%)

Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQY--NNNGYTPLHQAAINGHVKILEAFIASSPTS 193
            +  A+ +G  E    L     +       +N  Y  L         KI    I +    
Sbjct: 9   TVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI-NKGAD 67

Query: 194 FNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLL-------HQQDQFGNTVLHLAIL 246
               T +G T+F    + G  +       + +   +            +    V+   I 
Sbjct: 68  IKSRTKEGTTLFFPLFQGGGNDI----TGTTELCKIFLEKGADITALYKPYKIVVFKNIF 123

Query: 247 RNNY------QLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
                      L + I  ++ +    ++    TAL+ +K      
Sbjct: 124 NYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 16/177 (9%)

Query: 3   AATGFGHIELVTEIIKLCPQLVAAVNEK---LETPLHEACRQGNAEISALLLKTNLFVAT 59
           AA   G  E   E+ +   +       K   L   L     +   +IS  L+     +  
Sbjct: 12  AAAMLGTYEDFLELFEKGYE-DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-K 69

Query: 60  LLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEF-----EEDRDESTPLHVAISRGKIDI 114
              +E  + F    + G  ++          +E         +     +   I    +D 
Sbjct: 70  SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDE 129

Query: 115 VKEILKVRPSFCEQ------ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
            + I   +  F +        DK     L +  R       K++ +      L+ N+
Sbjct: 130 NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 81.7 bits (203), Expect = 8e-19
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 27/132 (20%)

Query: 68  AFLLACRRGHVNVVKLML------NQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKV 121
             L A R G  + V++++      N        +D    TPL++A + G ++IV+ +LK 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVN-------AKDEYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 122 RPSFCEQADKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQYNNNGYTPLHQAA 175
                   D     PLH A+ IG++EI ++LL      N++       +  G T    + 
Sbjct: 70  GADVNAV-DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ-------DKFGKTAFDISI 121

Query: 176 INGHVKILEAFI 187
            NG+  + E   
Sbjct: 122 GNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 77.4 bits (192), Expect = 3e-17
 Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 51/167 (30%)

Query: 98  DESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL---- 153
           D    L  A   G+ D V+ ++        + D+    PL+ A+  G++EI ++LL    
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGA 71

Query: 154 --NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRF 211
             N+        +  G+TPLH AA  GH++I E  +                        
Sbjct: 72  DVNAV-------DAIGFTPLHLAAFIGHLEIAEVLL------------------------ 100

Query: 212 GKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
            K+ A +            + QD+FG T   ++I   N  LAE + K
Sbjct: 101 -KHGADV------------NAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 57.8 bits (141), Expect = 2e-10
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 158 DMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF 217
                + ++    L +AA  G    +   + ++    N     G T  +LA   G     
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILM-ANGADVNAKDEYGLTPLYLATAHGHLEIV 63

Query: 218 IFLAESFDFTGLLH-----QQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQ 272
             L        L +       D  G T LHLA    + ++AE ++K    D N ++   +
Sbjct: 64  EVL--------LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH-GADVNAQDKFGK 114

Query: 273 TALDVLKESGTKE 285
           TA D+   +G ++
Sbjct: 115 TAFDISIGNGNED 127

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 56.6 bits (138), Expect = 5e-10
 Identities = 34/159 (21%), Positives = 53/159 (33%), Gaps = 55/159 (34%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEK---LETPLHEACRQGNAEISALLLKTNLFV 57
           A   G  +     +++   L+   A VN K     TPL+ A   G+ EI  +LLK     
Sbjct: 21  AARAGQDD----EVRI---LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK----- 68

Query: 58  ATLLNQERQSAFLLACRRGH---VNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDI 114
                              +   VN                D    TPLH+A   G ++I
Sbjct: 69  -------------------NGADVN--------------AVDAIGFTPLHLAAFIGHLEI 95

Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
            + +LK         DK        +   GN ++ ++L 
Sbjct: 96  AEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 79.7 bits (198), Expect = 2e-18
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 14/98 (14%)

Query: 96  DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL-- 153
            +D +TPLH A   G  + VK++L           K+   PLH A++ G+ EI KLLL  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 154 ----NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
               N++       + +G TP H A  NGH +I++   
Sbjct: 65  GADVNAR-------SKDGNTPEHLAKKNGHHEIVKLLD 95

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 75.9 bits (188), Expect = 5e-17
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 3/103 (2%)

Query: 71  LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD 130
            A + GH   VK +L++   +     +D +TPLH+A   G  +IVK +L           
Sbjct: 15  NAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARS 72

Query: 131 KNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQ 173
           K+   P H A + G+ EI KLL     D+  + +       H 
Sbjct: 73  KDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR-SWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 75.1 bits (186), Expect = 1e-16
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 51/154 (33%)

Query: 128 QADKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQYNNNGYTPLHQAAINGHVK 181
              K+   PLH A++ G+ E  K LL      N++       + +G TPLH AA NGH +
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR-------SKDGNTPLHLAAKNGHAE 56

Query: 182 ILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVL 241
           I++  +                            A +            + + + GNT  
Sbjct: 57  IVKLLL-------------------------AKGADV------------NARSKDGNTPE 79

Query: 242 HLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
           HLA    ++++ + +  K   D N R++ +    
Sbjct: 80  HLAKKNGHHEIVKLLDAK-GADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 44.7 bits (107), Expect = 6e-06
 Identities = 34/143 (23%), Positives = 47/143 (32%), Gaps = 51/143 (35%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEKLE---TPLHEACRQGNAEISALLLKTNLFV 57
           A   GH E     +K    L+   A VN + +   TPLH A + G+AEI  LLL      
Sbjct: 16  AAKNGHAE----EVKK---LLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA----- 63

Query: 58  ATLLNQERQSAFLLACRRG-HVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVK 116
                            +G  VN                 +D +TP H+A   G  +IVK
Sbjct: 64  -----------------KGADVN--------------ARSKDGNTPEHLAKKNGHHEIVK 92

Query: 117 EILKVRPSFCEQADKNRCLPLHY 139
            +                   H+
Sbjct: 93  LLDAKGADV-NARSWGSSHHHHH 114

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 78.9 bits (196), Expect = 3e-18
 Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 98  DESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKP 157
           +  TPLH+A   G +++VK +L+         DKN   PLH A+R G++E+ KLLL +  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 158 DMALQYNNNGYTPLHQAAINGHVKILEAFI 187
           D+  + + NG TPLH AA NGH+++++  +
Sbjct: 60  DVNAK-DKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 64.3 bits (158), Expect = 4e-13
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 14/83 (16%)

Query: 136 PLHYASRIGNVEITKLLL------NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189
           PLH A+R G++E+ KLLL      N+K       + NG TPLH AA NGH+++++  +  
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAK-------DKNGRTPLHLAARNGHLEVVKLLL-E 56

Query: 190 SPTSFNCLTTDGDTVFHLALRFG 212
           +    N    +G T  HLA R G
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNG 79

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 63.5 bits (156), Expect = 7e-13
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 71  LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD 130
           LA R GH+ VVKL+L     +   +D++  TPLH+A   G +++VK +L+         D
Sbjct: 8   LAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKD 65

Query: 131 KNRCLPLHYASRIGNVEITKLLL 153
           KN   PLH A+R G++E+ KLLL
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 47.3 bits (114), Expect = 3e-07
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 26/105 (24%)

Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG-----KYNAFIFL 220
           NG TPLH AA NGH+++++  +  +    N    +G T  HLA R G     K       
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKL------ 53

Query: 221 AESFDFTGLLHQ------QDQFGNTVLHLAILRNNYQLAEYIIKK 259
                   LL        +D+ G T LHLA    + ++ + +++ 
Sbjct: 54  --------LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.0 bits (95), Expect = 1e-04
 Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 50/120 (41%)

Query: 4   ATGFGHIELVTEIIKLCPQLV---AAVNEK---LETPLHEACRQGNAEISALLLKTNLFV 57
           A   GH+E+V    KL   L+   A VN K     TPLH A R G+ E+  LLL+     
Sbjct: 9   AARNGHLEVV----KL---LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE----- 56

Query: 58  ATLLNQERQSAFLLACRRG-HVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVK 116
                             G  VN               +D++  TPLH+A   G +++VK
Sbjct: 57  -----------------AGADVN--------------AKDKNGRTPLHLAARNGHLEVVK 85

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 62.2 bits (152), Expect = 3e-12
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 16/120 (13%)

Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNR--CLPLHYASRIGNVEITKLLLNSKPDMALQY 163
             S         ++         +         L  A+R G  +  ++L+ +  D+A + 
Sbjct: 1   GSSHHHHHHSSGLVPRG------SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK- 53

Query: 164 NNNGYTPLHQAAINGHVKILEAFI---ASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220
           + NG TPLH AA NGH+++++  +   A            G T F +++  G  +    L
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK----FGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 42/150 (28%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
            +   H    + ++       + +   L   L EA R G  +   +L+            
Sbjct: 1   GSSHHHHHHSSGLVPRG----SHMGSDLGKKLLEAARAGQDDEVRILMA----------- 45

Query: 64  ERQSAFLLACRRG-HVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVR 122
                       G  V                +D++ STPLH+A   G +++VK +L+  
Sbjct: 46  -----------NGADVA--------------AKDKNGSTPLHLAARNGHLEVVKLLLEAG 80

Query: 123 PSFCEQADKNRCLPLHYASRIGNVEITKLL 152
                Q DK        +   GN ++ ++L
Sbjct: 81  ADVXAQ-DKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 20/146 (13%), Positives = 47/146 (32%), Gaps = 42/146 (28%)

Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
            S   +   +  L+     M     ++    L +AA  G    +   +            
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILM------------ 44

Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
                           A +              +D+ G+T LHLA    + ++ + +++ 
Sbjct: 45  -------------ANGADV------------AAKDKNGSTPLHLAARNGHLEVVKLLLEA 79

Query: 260 TKVDKNCRNYTNQTALDVLKESGTKE 285
              D   ++   +TA D+  ++G ++
Sbjct: 80  -GADVXAQDKFGKTAFDISIDNGNED 104

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 59.6 bits (144), Expect = 5e-10
 Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 96  DRDESTPLHVAISRGKIDIVK--EILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
              + T LH+A+       +   + L       ++        LHY     N E  KLLL
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 154 NSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
             K  + +  N +G TPL  A    H    E
Sbjct: 226 RGKASIEIA-NESGETPLDIAKRLKHEHCEE 255

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.2 bits (122), Expect = 3e-07
 Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 3/97 (3%)

Query: 62  NQERQSAFLLACRRGHVNVVKLM--LNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEIL 119
           ++  ++A  LA R      + ++  L Q+     ++    ST LH        + + ++L
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL-KLL 224

Query: 120 KVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSK 156
               +  E A+++   PL  A R+ +    +LL  + 
Sbjct: 225 LRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL 261

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 1/97 (1%)

Query: 189 SSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRN 248
           +            +T  HLA+R     +   +      +G L +Q   G+T LH   L +
Sbjct: 157 TEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTD 216

Query: 249 NYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
           N +  + +++  K      N + +T LD+ K    + 
Sbjct: 217 NAECLKLLLRG-KASIEIANESGETPLDIAKRLKHEH 252

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 129 ADKNRCLPLHYASRIGN---VEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEA 185
             +     LH A R  +   + I   L+ +  ++  Q    G T LH   +  + + L+ 
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ-TGKGSTALHYCCLTDNAECLKL 223

Query: 186 FIASSPTSFNCLTTDGDTVFHLALRFG 212
            +     S       G+T   +A R  
Sbjct: 224 LLRGKA-SIEIANESGETPLDIAKRLK 249

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 5/93 (5%)

Query: 164 NNNGYTPLHQAAINGHVKILEA--FIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA 221
           +    T LH A  +     L    F+  +  + +  T  G T  H             L 
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 222 ESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAE 254
                   +   ++ G T L +A    +    E
Sbjct: 226 RG---KASIEIANESGETPLDIAKRLKHEHCEE 255

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 3e-09
 Identities = 56/394 (14%), Positives = 112/394 (28%), Gaps = 122/394 (30%)

Query: 31  LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLN-QSW 89
           L +P+    RQ +       + T +++         +       + +V+ ++  L  +  
Sbjct: 94  LMSPIKTEQRQPS-------MMTRMYIEQRDRLYNDNQVF---AKYNVSRLQPYLKLRQA 143

Query: 90  LMEFEED---------------------RDEST----PLHVA-ISRGKIDIVKEILKVRP 123
           L+E                                     +  ++    +  + +L++  
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 124 SFCEQADKNRCLPLHYASRIG-NVEITKL----LLNSKPDMALQYNN------NGYTPLH 172
               Q D N      ++S I   +   +     LL SKP     Y N      N      
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-----YENCLLVLLNVQNA-- 256

Query: 173 QAAINGHVKILEAFIASSPTSFNC---LTT---------DGDTVFHLALR-----FGKYN 215
                   K   AF      + +C   LTT            T  H++L           
Sbjct: 257 --------KAWNAF------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 216 AFIFLAESFD--FTGLLHQQDQFGNTVLHLAI----LRNNYQLAEYIIKKTKVDKNCRNY 269
               L +  D     L  +     N    L+I    +R+     +   K    DK     
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLT-TNP-RRLSIIAESIRDGLATWDN-WKHVNCDK--LTT 357

Query: 270 TNQTALDVLKESGTKEAF------------SSELQSV-------EEPNGSPKHLQQYKDL 310
             +++L+VL+ +  ++ F             + L S+        +       L +Y  +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 311 SKRQ------IKELSKRYKSRRDKKNELQREALQ 338
            K+       I  +    K + + +  L R  + 
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 4e-07
 Identities = 52/355 (14%), Positives = 97/355 (27%), Gaps = 105/355 (29%)

Query: 11  ELVTEIIKLCPQLVAAVNEKLETPLHEACRQGN---AEISALLLKTNLFVATLLNQERQS 67
           +L  E++   P+ ++ + E +           N        L       +  L   E + 
Sbjct: 317 DLPREVLTTNPRRLSIIAESIR---DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 68  AFL-LACRRGHVNVVKLMLNQSWL-MEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSF 125
            F  L+      ++  ++L+  W  +   +                  +V ++   + S 
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV---------------VVNKL--HKYSL 416

Query: 126 CEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEA 185
            E+  K   + +             + L  K  +  +Y       LH++ ++ H  I + 
Sbjct: 417 VEKQPKESTISIP-----------SIYLELKVKLENEYA------LHRSIVD-HYNIPKT 458

Query: 186 FIASSPTSFNCLTTDG----DTVFHL--ALRFGKYNAF--IFLAESFDFTG--LLHQQDQ 235
           F             D         HL       +   F  +FL   F F    + H    
Sbjct: 459 F---DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRFLEQKIRHDSTA 513

Query: 236 FGNTVLHLAILR--NNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQS 293
           +  +   L  L+    Y+   YI        N   Y  +    +L        F   L  
Sbjct: 514 WNASGSILNTLQQLKFYK--PYICD------NDPKYE-RLVNAILD-------F---LPK 554

Query: 294 VEEPNGSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQNARNTIILVA 348
           +EE      +L   K     +I                    AL      I   A
Sbjct: 555 IEE------NLICSKYTDLLRI--------------------ALMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 41/181 (22%)

Query: 225 DF-TGLLHQQDQFGNTVLHL--AILRN--NYQLAEY---IIKKTKVDK--NCRNYTNQT- 273
           DF TG    Q Q+ + +     A + N     + +    I+ K ++D     ++  + T 
Sbjct: 8   DFETG--EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 274 -ALDVLKESGT---KEAFSSELQ----------SVE--EPNGSPKHLQQYKDLSKRQIKE 317
                L        ++     L+            E  +P+   +   + +D      + 
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 318 LSKRYKSRRDKKNELQREALQNAR-NTIILV--------AVLIATVTYAGGI--SPPGGV 366
            +K   SR     +L R+AL   R    +L+          +   V  +  +       +
Sbjct: 126 FAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 367 Y 367
           +
Sbjct: 185 F 185

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 54.8 bits (131), Expect = 3e-08
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 3/122 (2%)

Query: 90  LMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEIT 149
           +      +D +TPL  A +   +    E L    +   QAD     PLH+A+ +G+  + 
Sbjct: 226 VNWVNGGQDNATPLIQATAANSLLAC-EFLLQNGANVNQADSAGRGPLHHATILGHTGLA 284

Query: 150 KLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN-CLTTDGDTVFHLA 208
            L L    D+  + ++ G  PL  A    +  I+     +            GD  +   
Sbjct: 285 CLFLKRGADLGAR-DSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDI 343

Query: 209 LR 210
            R
Sbjct: 344 FR 345

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 9/110 (8%)

Query: 230 LHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE---- 285
           ++Q D  G   LH A +  +  LA   +K+   D   R+   +  L +  E+   +    
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKR-GADLGARDSEGRDPLTIAMETANADIVTL 319

Query: 286 ---AFSSELQSVEEPNGSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNEL 332
              A   E ++ +   G   +L  ++D S     +  ++   R    + L
Sbjct: 320 LRLAKMREAEAAQGQAGDETYLDIFRDFSLM-ASDDPEKLSRRSHDLHTL 368

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 3/105 (2%)

Query: 28  NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
            +   TPL +A    +      LL+ N       +   +     A   GH  +  L L +
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATILGHTGLACLFL-K 289

Query: 88  SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKN 132
                   D +   PL +A+     DIV  +L++      +A + 
Sbjct: 290 RGADLGARDSEGRDPLTIAMETANADIV-TLLRLAKMREAEAAQG 333

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.4 bits (120), Expect = 7e-07
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 189 SSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRN 248
             P          + V HLA++     +   +       G L  +   GNT LH A L N
Sbjct: 178 GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYN 237

Query: 249 NYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
                + ++K  +      N   +TALD+ ++   KE
Sbjct: 238 QPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKE 273

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 25/139 (17%), Positives = 42/139 (30%), Gaps = 33/139 (23%)

Query: 20  CPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVN 79
            P          E  LH A +  N          +L +   + Q            GH++
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQ--------ASLPLVDFIIQN----------GGHLD 220

Query: 80  VVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHY 139
                             D +T LH A    + D +K +LK R       ++     L  
Sbjct: 221 AK--------------AADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDI 265

Query: 140 ASRIGNVEITKLLLNSKPD 158
           A +  + E  +LL  ++  
Sbjct: 266 ARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 3/104 (2%)

Query: 94  EEDRDESTPLHVAISRGKID--IVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKL 151
           +    E   LH+A+         + + +       +    +    LHYA+     +  KL
Sbjct: 185 DAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL 244

Query: 152 LLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
           LL  +  +    N  G T L  A    H +  E    +   +F 
Sbjct: 245 LLKGRALVGTV-NEAGETALDIARKKHHKECEELLEQAQAGTFA 287

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 24  VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
           + A      T LH A      +   LLLK    V   +N+  ++A  +A ++ H    +L
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEEL 277

Query: 84  MLNQSWLMEFEEDRDESTPLHVAIS 108
            L Q+    F      + PLHV  S
Sbjct: 278 -LEQAQAGTF------AFPLHVDYS 295

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 12/123 (9%)

Query: 171 LHQAAINGHVKILEAFIA-----SSPTSFNCLTTDGDTVFHLALRFGKYNAFI---FLAE 222
           L  A  N  +  +    A       P          + V HLA++     +     F+ +
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 223 SFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESG 282
                G L  +   GNT LH A L N     + ++K  +      N   +TALD+ ++  
Sbjct: 196 ---NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKH 251

Query: 283 TKE 285
            KE
Sbjct: 252 HKE 254

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	539
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.82
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.79
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.78
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.75
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.75
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.75
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.75
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.75
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.75
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.72
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.72
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.61
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.58

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.7e-44  Score=371.51  Aligned_cols=291  Identities=27%  Similarity=0.371  Sum_probs=189.3

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||+|++.|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.++
T Consensus        51 L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~  128 (437)
T 1n11_A           51 LHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVET  128 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHH
Confidence            5788888888888888888877 6778888888888888888888888888888776 5567778888888888888888


Q ss_pred             HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccc
Q 040043           81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA  160 (539)
Q Consensus        81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  160 (539)
                      +++|++++.... ..+..|.||||.|+..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++.++++.
T Consensus       129 v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  206 (437)
T 1n11_A          129 VLALLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH  206 (437)
T ss_dssp             HHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC
T ss_pred             HHHHHhCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence            888887776654 45666777777777777777777777766655 5556666677777777666666666666666655


Q ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhccc--------------
Q 040043          161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDF--------------  226 (539)
Q Consensus       161 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~--------------  226 (539)
                      .. +.+|.||||+|+..|+.++++.|++.+.+ ++..+..|.||||+|+..|+.+++++|++....              
T Consensus       207 ~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~  284 (437)
T 1n11_A          207 SP-AWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL  284 (437)
T ss_dssp             CC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHH
T ss_pred             Cc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence            43 55556666666666666666655554432 444455555555555555555555555543110              


Q ss_pred             ----------------ccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHH
Q 040043          227 ----------------TGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSE  290 (539)
Q Consensus       227 ----------------~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~  290 (539)
                                      +..++.+|..|+||||+|+..++.+++++|++. |+++|.+|..|.||||+|+..|+.++++.+
T Consensus       285 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L~~A~~~g~~~iv~~L  363 (437)
T 1n11_A          285 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLL  363 (437)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHCChHHHHHHH
Confidence                            233444555555555555555555555555532 555555555555555555555555555555


Q ss_pred             hhhccCCC
Q 040043          291 LQSVEEPN  298 (539)
Q Consensus       291 l~~~~~~~  298 (539)
                      ++.+++++
T Consensus       364 l~~ga~~~  371 (437)
T 1n11_A          364 LKNGASPN  371 (437)
T ss_dssp             HHTTCCSC
T ss_pred             HHCcCCCC
Confidence            55554444

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-43  Score=367.48  Aligned_cols=289  Identities=25%  Similarity=0.363  Sum_probs=263.1

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||+||..|+.++|++|++.+.+ ++.+|..|.||||+|++.|+.+++++|++.++++ +..+.+|.||||+|+..|+.++
T Consensus        18 L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~   95 (437)
T 1n11_A           18 LHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNM   95 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHH
Confidence            6899999999999999999877 6888999999999999999999999999999887 6688999999999999999999


Q ss_pred             HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccc
Q 040043           81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA  160 (539)
Q Consensus        81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  160 (539)
                      +++|++++.+++ ..+..|.||||+|+..|+.++++.|++.+.+. +..+..|.||||+|+..|+.+++++|+++|++++
T Consensus        96 v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  173 (437)
T 1n11_A           96 VKLLLENNANPN-LATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN  173 (437)
T ss_dssp             HHHHHHHTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHhCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence            999999998877 57889999999999999999999999998876 6678899999999999999999999999999998


Q ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcH
Q 040043          161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTV  240 (539)
Q Consensus       161 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~  240 (539)
                      .. +..|.||||.|+..|+.++++.|++.+.. ++..+.+|.||||+|+..++.+++++|++.   +..++.+|..|+||
T Consensus       174 ~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~  248 (437)
T 1n11_A          174 AA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQY---GGSANAESVQGVTP  248 (437)
T ss_dssp             CC-CSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCH
T ss_pred             CC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCH
Confidence            76 89999999999999999999999988755 677888999999999999999999999987   44577888889999


Q ss_pred             HHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCC
Q 040043          241 LHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNG  299 (539)
Q Consensus       241 Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~  299 (539)
                      ||+|+..++.+++++|++ .+++++..|..|.|||++|+..|+.++++.+++.+.+.+.
T Consensus       249 L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  306 (437)
T 1n11_A          249 LHLAAQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA  306 (437)
T ss_dssp             HHHHHHTTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred             HHHHHHCCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCC
Confidence            999999999999998885 4888888888888888888888888888888887666543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.2e-42  Score=334.10  Aligned_cols=266  Identities=18%  Similarity=0.197  Sum_probs=244.9

Q ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHH
Q 040043           29 EKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAIS  108 (539)
Q Consensus        29 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  108 (539)
                      .+|+||||.|++.|+.+++++|++.++++....+..|.||||+|+..|+.+++++|++++.++. ..+..|.||||+|+.
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~   81 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHH
Confidence            4688999999999999999999999998866558889999999999999999999999998877 578899999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcccccc---------ccCCCCHHHHHHHcCC
Q 040043          109 RGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQY---------NNNGYTPLHQAAINGH  179 (539)
Q Consensus       109 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~---------d~~g~tpLh~Aa~~g~  179 (539)
                      .|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++.|+++....         +..|.||||.|+..|+
T Consensus        82 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  160 (285)
T 1wdy_A           82 AGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  160 (285)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCC
Confidence            99999999999998887 7789999999999999999999999999999887542         6779999999999999


Q ss_pred             HHHHHHHHHhCCCccccccCCCCcHHHHHHHhCC----hhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHH
Q 040043          180 VKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK----YNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEY  255 (539)
Q Consensus       180 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~----~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~  255 (539)
                      .++++.|++..+..++..|..|+||||.|+..++    .+++++|++.   +..++.+|..|+||||+|+..++.+++++
T Consensus       161 ~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  237 (285)
T 1wdy_A          161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH---GADVNVRGERGKTPLILAVEKKHLGLVQR  237 (285)
T ss_dssp             HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT---TCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHc---CCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            9999999998777889999999999999999999    8899999887   56788999999999999999999999999


Q ss_pred             HhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCC
Q 040043          256 IIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNG  299 (539)
Q Consensus       256 Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~  299 (539)
                      |+++.|++++.+|..|+||+++|...++.++++.+++.+++++.
T Consensus       238 Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          238 LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             HHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence            99878999999999999999999999999999999999988764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=4.4e-41  Score=338.36  Aligned_cols=287  Identities=23%  Similarity=0.242  Sum_probs=252.5

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhcccc-CCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNE-KLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVN   79 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~-~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e   79 (539)
                      ||.||+.|+.++|++||+.|.+ ++.++. .|.||||+||..|+.++|++|++.|+++ +..+..+.+|++.++..+..+
T Consensus        29 L~~Av~~g~~~~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~~  106 (337)
T 4g8k_A           29 LIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFILAAIAGSVK  106 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch-hhhccCCCchhHHHHhcccch
Confidence            6889999999999999999988 666654 5999999999999999999999999987 668999999999999999999


Q ss_pred             HHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccc---------cccCCCCChHHhHHHHcCCHHHHH
Q 040043           80 VVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFC---------EQADKNRCLPLHYASRIGNVEITK  150 (539)
Q Consensus        80 iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~---------~~~d~~g~tpLh~A~~~g~~~~v~  150 (539)
                      ++..+++.+.+++ ..|..|.||||.|+..|+.++++.|++.+.++.         ...+..|.||||+|+..|+.++++
T Consensus       107 ~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~  185 (337)
T 4g8k_A          107 LLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK  185 (337)
T ss_dssp             HHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHH
T ss_pred             hhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHH
Confidence            9999999998887 678999999999999999999999999887652         234567999999999999999999


Q ss_pred             HHHc-CCCccccccccCCCCHHHHHHHcCC----HHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcc
Q 040043          151 LLLN-SKPDMALQYNNNGYTPLHQAAINGH----VKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFD  225 (539)
Q Consensus       151 ~Ll~-~~~~~~~~~d~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~  225 (539)
                      +|++ .|++++.. |..|.||+|.++..+.    .++++.|++.+ .+++.+|.+|+||||+|+..++.++++.|++.. 
T Consensus       186 ~LL~~~gad~n~~-d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g-ad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~-  262 (337)
T 4g8k_A          186 ILLDEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE-  262 (337)
T ss_dssp             HHHHHSCCCTTCC-CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT-CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTST-
T ss_pred             HHHhccCCCcCcc-CCCCCcHHHHHHHHcCcccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhc-
Confidence            9995 58888876 9999999998886544    45677777766 458899999999999999999999999998752 


Q ss_pred             cccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCCC
Q 040043          226 FTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGS  300 (539)
Q Consensus       226 ~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~~  300 (539)
                       +..++.+|.+|+||||+|+..|+.++|++|+++ |+|+|.+     +||++|+..|+.++++.+|+.+++++..
T Consensus       263 -~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          263 -HIEINDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             -TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT-SCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred             -CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence             456899999999999999999999999999954 9988754     6999999999999999999999988643

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-40  Score=325.67  Aligned_cols=261  Identities=24%  Similarity=0.274  Sum_probs=238.1

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||.|++.|+.++|++|++.+++.....+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.++
T Consensus         9 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~   87 (285)
T 1wdy_A            9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKL   87 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHH
Confidence            688999999999999999998843344889999999999999999999999999887 5688999999999999999999


Q ss_pred             HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccc----------CCCCChHHhHHHHcCCHHHHH
Q 040043           81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQA----------DKNRCLPLHYASRIGNVEITK  150 (539)
Q Consensus        81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~----------d~~g~tpLh~A~~~g~~~~v~  150 (539)
                      +++|++++.+++ ..+..|.||||.|+..|+.+++++|++.+.+. +..          +..|.||||+|+..|+.++++
T Consensus        88 v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  165 (285)
T 1wdy_A           88 LKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK  165 (285)
T ss_dssp             HHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHH
Confidence            999999998877 67889999999999999999999999998876 333          788999999999999999999


Q ss_pred             HHHcC-CCccccccccCCCCHHHHHHHcCC----HHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcc
Q 040043          151 LLLNS-KPDMALQYNNNGYTPLHQAAINGH----VKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFD  225 (539)
Q Consensus       151 ~Ll~~-~~~~~~~~d~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~  225 (539)
                      +|++. +.+++.. |..|.||||.|+..++    .++++.|++.+. +++..|..|+||||+|+..++.+++++|++.. 
T Consensus       166 ~Ll~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-  242 (285)
T 1wdy_A          166 ILLDEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGA-DVNVRGERGKTPLILAVEKKHLGLVQRLLEQE-  242 (285)
T ss_dssp             HHHHTSCCCTTCC-CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC-CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS-
T ss_pred             HHHHhcCCCCCcc-CCCCCCHHHHHHHccccchHHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcc-
Confidence            99987 8888776 9999999999999999    999999998875 47889999999999999999999999999842 


Q ss_pred             cccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCcccccc
Q 040043          226 FTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNY  269 (539)
Q Consensus       226 ~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~  269 (539)
                       +..++.+|..|+||||+|+..++.+++++|+++ |++++.+|.
T Consensus       243 -g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~-Ga~~~~~d~  284 (285)
T 1wdy_A          243 -HIEINDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCGDL  284 (285)
T ss_dssp             -SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred             -CCCccccCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCCcccc
Confidence             556899999999999999999999999999954 999998873

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=9.1e-40  Score=329.65  Aligned_cols=269  Identities=20%  Similarity=0.198  Sum_probs=239.1

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||.||+.|+.+.|+.++...+..++.+|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.++
T Consensus        28 L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~i  106 (351)
T 3utm_A           28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEV  106 (351)
T ss_dssp             HHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHH
Confidence            588999999999999998766668889999999999999999999999999999887 6688999999999999999999


Q ss_pred             HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHH--------------------
Q 040043           81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYA--------------------  140 (539)
Q Consensus        81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A--------------------  140 (539)
                      +++|++++.+++ ..+..|.||||+|+..|+.+++++|++.+.+. +..+..|.||+|+|                    
T Consensus       107 v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~  184 (351)
T 3utm_A          107 TELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ  184 (351)
T ss_dssp             HHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHH
Confidence            999999998887 57889999999999999999999999998887 77788999987765                    


Q ss_pred             -HHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHc---CCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhH
Q 040043          141 -SRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAIN---GHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNA  216 (539)
Q Consensus       141 -~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~  216 (539)
                       +..++.+.++.++..+..... .+..|.||||+|+..   +..++++.|++.+.+ ++..|..|+||||+|+.+|+.++
T Consensus       185 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~  262 (351)
T 3utm_A          185 AAREADLAKVKKTLALEIINFK-QPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDV  262 (351)
T ss_dssp             HHHTTCHHHHHHHTTTCCTTCC-CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHhccHHHHHHHHHhhccccc-CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHH
Confidence             456677777777776654443 378899999999999   558899999987744 78899999999999999999999


Q ss_pred             HHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHH
Q 040043          217 FIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVL  278 (539)
Q Consensus       217 v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a  278 (539)
                      +++|++.   +..++.+|..|+||||+|+..++.+++++|++. |++++.+|..|+||+++|
T Consensus       263 v~~Ll~~---ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~~~~g~tal~~a  320 (351)
T 3utm_A          263 MEVLHKH---GAKMNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSIISLQGFTAAQMG  320 (351)
T ss_dssp             HHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHS
T ss_pred             HHHHHHC---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCChhhhh
Confidence            9999987   567899999999999999999999999999955 999999999999999997

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.2e-39  Score=324.74  Aligned_cols=269  Identities=18%  Similarity=0.197  Sum_probs=243.9

Q ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHH
Q 040043           27 VNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVA  106 (539)
Q Consensus        27 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A  106 (539)
                      .+.+|+||||.||+.|++++|++|++.|+++....+..|.||||+|+..|+.++|++|+++|+++. ..+..+.++++.+
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~-~~~~~~~~~~~~~   99 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFILA   99 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHH
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh-hhccCCCchhHHH
Confidence            345688999999999999999999999998854445569999999999999999999999999887 6788999999999


Q ss_pred             HHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccc---------cccCCCCHHHHHHHc
Q 040043          107 ISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQ---------YNNNGYTPLHQAAIN  177 (539)
Q Consensus       107 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~---------~d~~g~tpLh~Aa~~  177 (539)
                      +..+...++..+++.+.++ +..|..|+||||+|+..|+.+++++|+++|++++..         .+..|.||||+|+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~  178 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  178 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred             HhcccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence            9999999999999988887 788999999999999999999999999999887642         255789999999999


Q ss_pred             CCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCCh----hHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHH
Q 040043          178 GHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKY----NAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLA  253 (539)
Q Consensus       178 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~----~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv  253 (539)
                      |+.++++.|++..+.+++..|..|+|++|.++..+..    .++++|++.   +..+|.+|..|+||||+|+..++.+++
T Consensus       179 g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~---gad~n~~d~~g~t~L~~a~~~~~~~~v  255 (337)
T 4g8k_A          179 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH---GADVNVRGERGKTPLILAVEKKHLGLV  255 (337)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT---TCCTTCCCGGGCCHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHhhhhHHH
Confidence            9999999999887788999999999999998876553    467788776   667899999999999999999999999


Q ss_pred             HHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCCC
Q 040043          254 EYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGS  300 (539)
Q Consensus       254 ~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~~  300 (539)
                      +.|++..++++|.+|.+|+||||+|++.|+.++++.+++.+++++..
T Consensus       256 ~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~  302 (337)
T 4g8k_A          256 QRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  302 (337)
T ss_dssp             HHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC
T ss_pred             HHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            99998889999999999999999999999999999999999888643

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.5e-39  Score=316.73  Aligned_cols=253  Identities=19%  Similarity=0.183  Sum_probs=202.4

Q ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhcCcc----------cccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCC
Q 040043           29 EKLETPLHEACRQGNAEISALLLKTNLF----------VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRD   98 (539)
Q Consensus        29 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~----------~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~   98 (539)
                      ..|.|+||+|++.|+.+.+..++..++.          ..+..|..|.||||+|+..|+.+++++|++.+.+++ ..+.+
T Consensus        13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~~   91 (285)
T 3d9h_A           13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITAD   91 (285)
T ss_dssp             -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-EECTT
T ss_pred             hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCC
Confidence            4789999999999998777776654322          235578899999999999999999999999998877 67889


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcC
Q 040043           99 ESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAING  178 (539)
Q Consensus        99 g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g  178 (539)
                      |.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.|+++..  +.+|.||||+|+..|
T Consensus        92 g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g  168 (285)
T 3d9h_A           92 HVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRG  168 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHHT
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcC
Confidence            999999999999999999999998877 78899999999999999999999999999998875  556999999999999


Q ss_pred             CHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043          179 HVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK  258 (539)
Q Consensus       179 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  258 (539)
                      +.++++.|++.+.+ ++..|..|+||||+|+..++.+++++|++.   +..++ .|..|+||||+|+..++.+++++|++
T Consensus       169 ~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~  243 (285)
T 3d9h_A          169 HVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLES---GADVN-QGKGQDSPLHAVVRTASEELACLLMD  243 (285)
T ss_dssp             CHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHT---TCCTT-CCBTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHC---CCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999988754 788999999999999999999999999987   44566 48999999999999999999999996


Q ss_pred             ccccCccccccCCCCHHHHHHHcCCchhhHHHhhh
Q 040043          259 KTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQS  293 (539)
Q Consensus       259 ~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~  293 (539)
                      . |++++.+|.+|+||+++|.  ++.+.++.+++.
T Consensus       244 ~-gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~  275 (285)
T 3d9h_A          244 F-GADTQAKNAEGKRPVELVP--PESPLAQLFLER  275 (285)
T ss_dssp             T-TCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred             C-CCCCCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence            4 9999999999999999998  446777777776

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.5e-39  Score=315.99  Aligned_cols=254  Identities=20%  Similarity=0.220  Sum_probs=208.0

Q ss_pred             CceecccCcHHHHHHHHHhCC----------hhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCP----------QLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFL   70 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~----------~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~   70 (539)
                      ||+|+..|+.+.+..++..++          ..+..+|..|+||||+||..|+.+++++|++.+.++ +..|.+|.||||
T Consensus        19 lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~   97 (285)
T 3d9h_A           19 SHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLH   97 (285)
T ss_dssp             -----------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCCCHHH
T ss_pred             HHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHH
Confidence            799999999888888766532          235678899999999999999999999999999887 678999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHH
Q 040043           71 LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITK  150 (539)
Q Consensus        71 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~  150 (539)
                      +|+..|+.+++++|++++.+++ ..+..|.||||+|+..|+.++++.|++.+.+. + .+..|.||||+|+..|+.++++
T Consensus        98 ~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~  174 (285)
T 3d9h_A           98 EACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVN  174 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHH
T ss_pred             HHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999998877 67899999999999999999999999998876 3 3456999999999999999999


Q ss_pred             HHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhccccccc
Q 040043          151 LLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLL  230 (539)
Q Consensus       151 ~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~  230 (539)
                      +|++.|++++.. |..|.||||+|+..|+.++++.|++.+.+ ++ .+..|+||||+|+..++.+++++|++.   +.++
T Consensus       175 ~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~  248 (285)
T 3d9h_A          175 SLIAYGGNIDHK-ISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEELACLLMDF---GADT  248 (285)
T ss_dssp             HHHHTTCCTTCC-BTTTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTTCHHHHHHHHHT---TCCT
T ss_pred             HHHHCCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCC
Confidence            999999999876 99999999999999999999999998755 44 488999999999999999999999997   6678


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccc
Q 040043          231 HQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNC  266 (539)
Q Consensus       231 ~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~  266 (539)
                      +.+|.+|+||||+|+  ++.+++++|+++.++++..
T Consensus       249 ~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          249 QAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK  282 (285)
T ss_dssp             TCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred             CCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence            999999999999999  5578999999876776653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-39  Score=331.27  Aligned_cols=261  Identities=17%  Similarity=0.214  Sum_probs=226.6

Q ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccc-cCCChHHHHHHHcCCHHHHHHHH--------hCCccccccc
Q 040043           25 AAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLN-QERQSAFLLACRRGHVNVVKLML--------NQSWLMEFEE   95 (539)
Q Consensus        25 ~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~eiv~~Ll--------~~~~~~~~~~   95 (539)
                      ...|..|.||||+|+..|+ ++++.|+..+  + +..| ..|.||||+|+..|+.+++++|+        +.+.+++ ..
T Consensus        88 ~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~~--~-n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn-~~  162 (373)
T 2fo1_E           88 TEPEPESPIKLHTEAAGSY-AITEPITRES--V-NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AM  162 (373)
T ss_dssp             ------CCCHHHHHHHSSS-CCCSCCSTTT--T-TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-CC
T ss_pred             cCCCCCCccHHHHHhcCCc-hHHHHhcccc--c-cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCc-CC
Confidence            3567899999999999665 7888887643  3 3455 78999999999999998888776        7888877 67


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCC---CccccccccCCCCHHH
Q 040043           96 DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSK---PDMALQYNNNGYTPLH  172 (539)
Q Consensus        96 ~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~---~~~~~~~d~~g~tpLh  172 (539)
                      |..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.+   .+++.. |..|.||||
T Consensus       163 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-d~~g~t~L~  240 (373)
T 2fo1_E          163 DCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL-DRNGMTALM  240 (373)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC-CTTSCCHHH
T ss_pred             CCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhc-CCCCCCHHH
Confidence            899999999999999999999999999887 788999999999999999999999999988   566665 999999999


Q ss_pred             HHHHcC---CHHHHHHHHHhCCCccc--------cccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHH
Q 040043          173 QAAING---HVKILEAFIASSPTSFN--------CLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVL  241 (539)
Q Consensus       173 ~Aa~~g---~~~~v~~Ll~~~~~~~~--------~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~L  241 (539)
                      +|+..+   +.++++.|++.+.+ ++        ..|..|+||||+|+..|+.+++++|++..  +..++.+|..|+|||
T Consensus       241 ~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~n~~d~~g~TpL  317 (373)
T 2fo1_E          241 IVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK--GSNKDKQDEDGKTPI  317 (373)
T ss_dssp             HHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS--CCCTTCCCTTCCCHH
T ss_pred             HHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc--CCCccCcCCCCCCHH
Confidence            999998   89999999998765 33        35779999999999999999999999873  256899999999999


Q ss_pred             HHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccC
Q 040043          242 HLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEE  296 (539)
Q Consensus       242 h~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~  296 (539)
                      |+|+..|+.+++++|++. |++++.+|..|+|||++|+..|+.++++.+++.+.+
T Consensus       318 ~~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          318 MLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            999999999999999965 999999999999999999999999999999886543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.3e-38  Score=306.97  Aligned_cols=228  Identities=20%  Similarity=0.212  Sum_probs=109.6

Q ss_pred             hhccccCCCCHHHHHHHcC-------------CHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcc
Q 040043           24 VAAVNEKLETPLHEACRQG-------------NAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWL   90 (539)
Q Consensus        24 l~~~n~~g~TpLh~Aa~~g-------------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~   90 (539)
                      ++.+|.+|.||||+|+..|             +.++++.|++.++++....|..|.||||+|+..|+.+++++|++++.+
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            5778999999999999987             566666666666665555566666666666666666666666666655


Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCH
Q 040043           91 MEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTP  170 (539)
Q Consensus        91 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp  170 (539)
                      ++ ..+..|.||||+|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|++.|++++.. |..|.||
T Consensus        83 ~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~t~  160 (253)
T 1yyh_A           83 AN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSA  160 (253)
T ss_dssp             TT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCB-CTTSCBH
T ss_pred             CC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCc-CCCCCCH
Confidence            54 345556666666666666666666666555444555556666666666666666666666666655544 5555666


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCH
Q 040043          171 LHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNY  250 (539)
Q Consensus       171 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~  250 (539)
                      ||+|+..|+.++++.|++.+.+ ++..|..|+||||+|+..|+.+++++|++.   +..++.+|..|+||||+|+..|+.
T Consensus       161 L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~g~~  236 (253)
T 1yyh_A          161 LHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHH  236 (253)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCccccccCCCCHHHHHHHcCCH
Confidence            6666666666666555555432 444555555555555555555555555544   333444555555555555555555


Q ss_pred             HHHHHHh
Q 040043          251 QLAEYII  257 (539)
Q Consensus       251 ~iv~~Ll  257 (539)
                      +++++|.
T Consensus       237 ~i~~~l~  243 (253)
T 1yyh_A          237 DIVRLLD  243 (253)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555554

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.5e-39  Score=328.07  Aligned_cols=261  Identities=18%  Similarity=0.202  Sum_probs=231.7

Q ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHH
Q 040043           24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPL  103 (539)
Q Consensus        24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~L  103 (539)
                      .+..|..|.||||+||..|+.+++++|++.|.++ +..|..|.||||+|+..|+.+++++|++++....   +.+|.|||
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g~t~L   88 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPI   88 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTTBCHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCCCCHH
Confidence            4567889999999999999999999999999887 6789999999999999999999999999998543   45899999


Q ss_pred             HHHHHcCCHHHHHHHHhc----CCccccc-----------------cCCCCChHHhHHHHcC--CHHHHHHHHcCCCccc
Q 040043          104 HVAISRGKIDIVKEILKV----RPSFCEQ-----------------ADKNRCLPLHYASRIG--NVEITKLLLNSKPDMA  160 (539)
Q Consensus       104 h~A~~~g~~~~v~~LL~~----~~~~~~~-----------------~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~  160 (539)
                      |+|+..|+.++++.|++.    +.+. +.                 .|..|.||||+|+..|  +.+++++|+++|++++
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~  167 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT  167 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc
Confidence            999999999999999998    5544 33                 7788999999999999  9999999999999998


Q ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHhCCCc----cccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCC
Q 040043          161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTS----FNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQF  236 (539)
Q Consensus       161 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~----~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~  236 (539)
                      .. |..|.||||+|+..|+.++++.|++.+++.    ++..|..|+||||+|+..|+.+++++|++.   +.+++.+|..
T Consensus       168 ~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~~~~d~~  243 (364)
T 3ljn_A          168 AK-DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM---GIDVNMEDNE  243 (364)
T ss_dssp             CC-CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT---TCCTTCCCTT
T ss_pred             cc-CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCC
Confidence            86 999999999999999999999999987653    788899999999999999999999999987   6678999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhccccCcc------------ccccCCCCHHHHHHHcCCchhhHHHhhhc
Q 040043          237 GNTVLHLAILRNNYQLAEYIIKKTKVDKN------------CRNYTNQTALDVLKESGTKEAFSSELQSV  294 (539)
Q Consensus       237 G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~------------~~n~~g~t~l~~a~~~~~~~~~~~~l~~~  294 (539)
                      |+||||+|+..++.+++++|+++ +.+++            ..+..|.||++.|...+..+.+..+++..
T Consensus       244 g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~  312 (364)
T 3ljn_A          244 HTVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK  312 (364)
T ss_dssp             SCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH
Confidence            99999999999999999999965 55543            25678889999888888777777777653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.1e-37  Score=311.08  Aligned_cols=276  Identities=22%  Similarity=0.204  Sum_probs=242.6

Q ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHH
Q 040043           24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPL  103 (539)
Q Consensus        24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~L  103 (539)
                      ....+..|.|+||.||+.|+.+.++.|+.......+..|..|.||||+|+..|+.+++++|++++.+++ ..+..|.|||
T Consensus        17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L   95 (351)
T 3utm_A           17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-AKDKGGLVPL   95 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHH
T ss_pred             eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCcHH
Confidence            456778899999999999999999999987555557789999999999999999999999999998887 6788999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHH---------
Q 040043          104 HVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQA---------  174 (539)
Q Consensus       104 h~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A---------  174 (539)
                      |+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|+++... +..|.+|++.|         
T Consensus        96 ~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~~~l~~a~~~~~~~~~  173 (351)
T 3utm_A           96 HNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV-NCHGKSAVDMAPTPELRERL  173 (351)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCSSHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-cCCCCcchHHHhhhhhHHHH
Confidence            9999999999999999998887 778999999999999999999999999999999876 89999998775         


Q ss_pred             ------------HHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHh---CChhHHHHHHhhcccccccccccCCCCc
Q 040043          175 ------------AINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRF---GKYNAFIFLAESFDFTGLLHQQDQFGNT  239 (539)
Q Consensus       175 ------------a~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~---~~~~~v~~Ll~~~~~~~~~~~~d~~G~T  239 (539)
                                  +..+..+.+..++..... ....+..|.||||+|+..   +..+++++|++.   +..++.+|..|+|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t  249 (351)
T 3utm_A          174 TYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRK---GANVNEKNKDFMT  249 (351)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT---TCCTTCCCTTCCC
T ss_pred             HhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc---CCCcCCcCCCCCC
Confidence                        455666666666655433 344677899999999999   557889999887   5678999999999


Q ss_pred             HHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCCCchhhhHH
Q 040043          240 VLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSPKHLQQY  307 (539)
Q Consensus       240 ~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  307 (539)
                      |||+|+..++.+++++|++ .|+++|.+|..|+||||+|+..|+.++++.+++.+.+++.........
T Consensus       250 ~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~ta  316 (351)
T 3utm_A          250 PLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA  316 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCh
Confidence            9999999999999999995 599999999999999999999999999999999999887655544433

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-38  Score=323.84  Aligned_cols=250  Identities=18%  Similarity=0.212  Sum_probs=221.6

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccc-cCCCCHHHHHHHcCCHHHHHHHH--------hcCcccccccccCCChHHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVN-EKLETPLHEACRQGNAEISALLL--------KTNLFVATLLNQERQSAFLL   71 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n-~~g~TpLh~Aa~~g~~~iv~~Ll--------~~~~~~~~~~~~~g~tpL~~   71 (539)
                      ||.||..|+ ++++.|+..   .++.+| ..|.||||+||..|+.+++++|+        +.|.++ +..|..|.||||+
T Consensus        98 L~~Aa~~~~-~~~~~L~~~---~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~TpL~~  172 (373)
T 2fo1_E           98 LHTEAAGSY-AITEPITRE---SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLML  172 (373)
T ss_dssp             HHHHHHSSS-CCCSCCSTT---TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHH
T ss_pred             HHHHhcCCc-hHHHHhccc---cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCHHHH
Confidence            467777443 666666542   256677 79999999999999998888776        778777 6789999999999


Q ss_pred             HHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC--ccccccCCCCChHHhHHHHcC---CH
Q 040043           72 ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRP--SFCEQADKNRCLPLHYASRIG---NV  146 (539)
Q Consensus        72 A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~--~~~~~~d~~g~tpLh~A~~~g---~~  146 (539)
                      |+..|+.+++++|++++++++ ..+..|.||||+|+..|+.+++++|++.+.  ...+..|..|.||||+|+..+   +.
T Consensus       173 A~~~g~~~iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~  251 (373)
T 2fo1_E          173 AVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV  251 (373)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHH
T ss_pred             HHHcChHHHHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchH
Confidence            999999999999999999887 678899999999999999999999999763  233778999999999999998   89


Q ss_pred             HHHHHHHcCCCcccc-------ccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHH
Q 040043          147 EITKLLLNSKPDMAL-------QYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIF  219 (539)
Q Consensus       147 ~~v~~Ll~~~~~~~~-------~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~  219 (539)
                      +++++|++.|++++.       ..|..|.||||+|+..|+.++++.|++.++.+++..|..|+||||+|+..|+.+++++
T Consensus       252 ~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~  331 (373)
T 2fo1_E          252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY  331 (373)
T ss_dssp             HHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999998875       2367899999999999999999999999888899999999999999999999999999


Q ss_pred             HHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhc
Q 040043          220 LAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK  259 (539)
Q Consensus       220 Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  259 (539)
                      |++.   +..++.+|..|+||||+|+..++.+++++|++.
T Consensus       332 Ll~~---gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          332 LIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             HHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHc---CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9997   667899999999999999999999999999954

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.1e-37  Score=297.40  Aligned_cols=231  Identities=19%  Similarity=0.247  Sum_probs=179.4

Q ss_pred             cccccCCChHHHHHHHcC-------------CHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcc
Q 040043           59 TLLNQERQSAFLLACRRG-------------HVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSF  125 (539)
Q Consensus        59 ~~~~~~g~tpL~~A~~~g-------------~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~  125 (539)
                      +.+|.+|.||||+|+..|             +.+++++|++++.+.....+..|.||||+|+..|+.++++.|++.+.++
T Consensus         4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~   83 (253)
T 1yyh_A            4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA   83 (253)
T ss_dssp             ------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            567899999999999987             8999999999999887677899999999999999999999999998887


Q ss_pred             ccccCCCCChHHhHHHHcCCHHHHHHHHcCCC-ccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcH
Q 040043          126 CEQADKNRCLPLHYASRIGNVEITKLLLNSKP-DMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTV  204 (539)
Q Consensus       126 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~-~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~  204 (539)
                       +..|..|+||||+|+..|+.+++++|++.++ +++. .+..|.||||+|+..|+.++++.|++.+. +++..|..|+||
T Consensus        84 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~d~~g~t~  160 (253)
T 1yyh_A           84 -NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA-RMHDGTTPLILAARLAVEGMLEDLINSHA-DVNAVDDLGKSA  160 (253)
T ss_dssp             -TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTC-CCTTCCCHHHHHHHHTCSSHHHHHHHTTC-CTTCBCTTSCBH
T ss_pred             -CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-cCCCCCcHHHHHHHcChHHHHHHHHHcCC-CCCCcCCCCCCH
Confidence             7889999999999999999999999999998 5554 49999999999999999999999999765 478899999999


Q ss_pred             HHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCc
Q 040043          205 FHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTK  284 (539)
Q Consensus       205 Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~  284 (539)
                      ||+|+..|+.+++++|++.   +..++.+|..|+||||+|+..++.+++++|++. |++++.+|..|+||+++|.+.|+.
T Consensus       161 L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~g~~  236 (253)
T 1yyh_A          161 LHWAAAVNNVDAAVVLLKN---GANKDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQERMHH  236 (253)
T ss_dssp             HHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccCCCCHHHHHHHcCCH
Confidence            9999999999999999987   567889999999999999999999999999954 999999999999999999999999


Q ss_pred             hhhHHHhhhccC
Q 040043          285 EAFSSELQSVEE  296 (539)
Q Consensus       285 ~~~~~~l~~~~~  296 (539)
                      +++..+.+....
T Consensus       237 ~i~~~l~~~~~~  248 (253)
T 1yyh_A          237 DIVRLLDLEHHH  248 (253)
T ss_dssp             HHHHHHHC----
T ss_pred             HHHHHHHHHhhh
Confidence            999888765443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=9.2e-37  Score=290.64  Aligned_cols=227  Identities=23%  Similarity=0.393  Sum_probs=165.5

Q ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHH
Q 040043           24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPL  103 (539)
Q Consensus        24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~L  103 (539)
                      ++.+|..|.||||+|+..|+.+++++|++.|.++ +..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.|||
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L   81 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-PKDAEGSTCL   81 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-CCCTTSCCHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCcHH
Confidence            4567788888888888888888888888888776 5567788888888888888888888888887765 4667788888


Q ss_pred             HHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHH
Q 040043          104 HVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKIL  183 (539)
Q Consensus       104 h~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v  183 (539)
                      |.|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.|++++.. +..|.||||.|+..|+.+++
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~  160 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIA  160 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc-CCCCCCHHHHHHHCCCHHHH
Confidence            88888888888888888775555677777888888888888888888888877777665 77777777777777777777


Q ss_pred             HHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHh
Q 040043          184 EAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYII  257 (539)
Q Consensus       184 ~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll  257 (539)
                      +.|++.+.+ ++..|..|+||||+|+..++.+++++|++.   +..++.+|.+|+||||+|+..++.+.+..|+
T Consensus       161 ~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          161 EILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSR---DSDVTLKNKEGETPLQCASLNSQVWSALQMS  230 (237)
T ss_dssp             HHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHc---CCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            777766533 555566666666666666666666666654   3445556666666666666666554444333

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.3e-37  Score=293.49  Aligned_cols=229  Identities=21%  Similarity=0.208  Sum_probs=183.3

Q ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHh----cCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCC
Q 040043           24 VAAVNEKLETPLHEACRQGNAEISALLLK----TNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDE   99 (539)
Q Consensus        24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g   99 (539)
                      ++.+|.+|+||||+||..|+.+++++|++    .+.++ +..|..|.||||+|+..|+.+++++|++++.++. ..+..|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g   79 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHG   79 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCC
Confidence            46789999999999999999999999997    45555 6678899999999999999999999999998876 568889


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCc---cccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHH
Q 040043          100 STPLHVAISRGKIDIVKEILKVRPS---FCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAI  176 (539)
Q Consensus       100 ~t~Lh~A~~~g~~~~v~~LL~~~~~---~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~  176 (539)
                      .||||+|+..|+.++++.|++.++.   ..+..|..|.||||+|+..|+.+++++|++.|++++...+..|.||||+|+.
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence            9999999999999999999998762   3366788899999999999999999999999888887633778888888888


Q ss_pred             cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHH
Q 040043          177 NGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI  256 (539)
Q Consensus       177 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L  256 (539)
                      .|+.++++.|++.+. +++..|..|+||||+|+..++.+++++|++.   +..++.+|..|+||||+|+..++.++++.|
T Consensus       160 ~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l  235 (241)
T 1k1a_A          160 NNSLSMVQLLLQHGA-NVNAQMYSGSSALHSASGRGLLPLVRTLVRS---GADSSLKNCHNDTPLMVARSRRVIDILRGK  235 (241)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred             cCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc---CCCCCCcCCCCCCHHHHHHhcCcHHHHhhh
Confidence            888888888887754 3677777777777777777777777777775   455677777777777777777777777776


Q ss_pred             hh
Q 040043          257 IK  258 (539)
Q Consensus       257 l~  258 (539)
                      ++
T Consensus       236 ~~  237 (241)
T 1k1a_A          236 AT  237 (241)
T ss_dssp             --
T ss_pred             cc
Confidence            64

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.8e-37  Score=300.89  Aligned_cols=252  Identities=20%  Similarity=0.150  Sum_probs=191.8

Q ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcc--cccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCc
Q 040043           24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLF--VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDEST  101 (539)
Q Consensus        24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~--~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t  101 (539)
                      ++.+|..|+||||+||+.|+.+++++|++.+++  ..+..+..|.||||+|+..|+.+++++|++++++++ ..+..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCC
Confidence            467899999999999999999999999998776  246788999999999999999999999999999887 67889999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCccc------------cccCCCCChHHhHHHHcCCHH-HHHHHHcCCCccccccccCCC
Q 040043          102 PLHVAISRGKIDIVKEILKVRPSFC------------EQADKNRCLPLHYASRIGNVE-ITKLLLNSKPDMALQYNNNGY  168 (539)
Q Consensus       102 ~Lh~A~~~g~~~~v~~LL~~~~~~~------------~~~d~~g~tpLh~A~~~g~~~-~v~~Ll~~~~~~~~~~d~~g~  168 (539)
                      |||+|+..|+.++++.|++.++...            ......+.++++.++..+... ....+...+.+++.. +..|.
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~  159 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGH  159 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCC-CTTSC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc-CCCCc
Confidence            9999999999999999999876531            122345667777777665443 444555556666665 89999


Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCccccccC-CCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHc
Q 040043          169 TPLHQAAINGHVKILEAFIASSPTSFNCLTT-DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILR  247 (539)
Q Consensus       169 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~  247 (539)
                      ||||+|+..|+.++++.|++.+.+ ++..+. .|+||||+|+..|+.+++++|++.   +..++.+|..|+||||+|+..
T Consensus       160 t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~  235 (282)
T 1oy3_D          160 TPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLKA---GADPTARMYGGRTPLGSALLR  235 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHTS
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc---CCCCcccccCCCCHHHHHHHc
Confidence            999999999999999999998865 566664 599999999999999999999998   667899999999999999999


Q ss_pred             CCHHHHHHHhhccccCccccccCCCCHHHHHHHcC
Q 040043          248 NNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESG  282 (539)
Q Consensus       248 ~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~  282 (539)
                      ++.+++++|++ .|++++.+|..|.||+++|....
T Consensus       236 ~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          236 PNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             SCHHHHHHHHH-TTCCCCCCC--------------
T ss_pred             CCcHHHHHHHH-cCCCcCcCCCcccccccccCCcc
Confidence            99999999995 59999999999999999997654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=8.7e-38  Score=317.76  Aligned_cols=252  Identities=19%  Similarity=0.177  Sum_probs=225.1

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||+||..|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+++.   .+.+|.||||+|+..|+.++
T Consensus        24 L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~~~g~~~~   99 (364)
T 3ljn_A           24 IHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMANKTDL   99 (364)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHHHcCCHHH
Confidence            6899999999999999999887 7899999999999999999999999999999854   34689999999999999999


Q ss_pred             HHHHHhC----Cccccc----------------ccCCCCCcHHHHHHHcC--CHHHHHHHHhcCCccccccCCCCChHHh
Q 040043           81 VKLMLNQ----SWLMEF----------------EEDRDESTPLHVAISRG--KIDIVKEILKVRPSFCEQADKNRCLPLH  138 (539)
Q Consensus        81 v~~Ll~~----~~~~~~----------------~~~~~g~t~Lh~A~~~g--~~~~v~~LL~~~~~~~~~~d~~g~tpLh  138 (539)
                      +++|+++    +..++.                ..+..|.||||+|+..|  +.+++++|++.+.++ +..|..|.||||
T Consensus       100 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~  178 (364)
T 3ljn_A          100 VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLM  178 (364)
T ss_dssp             HHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHH
T ss_pred             HHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHH
Confidence            9999998    555441                16778999999999999  999999999998887 788999999999


Q ss_pred             HHHHcCCHHHHHHHHcCCCc-----cccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCC
Q 040043          139 YASRIGNVEITKLLLNSKPD-----MALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK  213 (539)
Q Consensus       139 ~A~~~g~~~~v~~Ll~~~~~-----~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~  213 (539)
                      +|+..|+.+++++|+++|++     ++.. |..|.||||+|+..|+.++++.|++.+.+ ++..|..|+||||+|+..|+
T Consensus       179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~  256 (364)
T 3ljn_A          179 RAMEFRNREALDLMMDTVPSKSSLRLDYA-NKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAM  256 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHCSCSSSCCTTCC-CTTCCCTTHHHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCC
T ss_pred             HHHHcCCHHHHHHHHhccccccccccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhCh
Confidence            99999999999999999988     7665 89999999999999999999999998754 78999999999999999999


Q ss_pred             hhHHHHHHhhcccc---------cccccccCCCCcHHHHHHHcCCHHHHHHHhhc
Q 040043          214 YNAFIFLAESFDFT---------GLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK  259 (539)
Q Consensus       214 ~~~v~~Ll~~~~~~---------~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  259 (539)
                      .+++++|++.....         ......+..|+||+++|+..++.+.+..|+..
T Consensus       257 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~  311 (364)
T 3ljn_A          257 VLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE  311 (364)
T ss_dssp             HHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHH
Confidence            99999999974321         12233678899999999999988888888754

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.3e-36  Score=286.78  Aligned_cols=224  Identities=24%  Similarity=0.322  Sum_probs=185.1

Q ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHH
Q 040043           28 NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAI  107 (539)
Q Consensus        28 n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~  107 (539)
                      +..++||||.|++.|+.++++.|++.++...+..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~   81 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAA   81 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-CcCCCCCCHHHHHH
Confidence            45688999999999999999999998887777788899999999999999999999999887776 56778889999999


Q ss_pred             HcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHH
Q 040043          108 SRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI  187 (539)
Q Consensus       108 ~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll  187 (539)
                      ..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.|.+++.. +..|.||||.|+..|+.++++.|+
T Consensus        82 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll  159 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKGNLKMVHILL  159 (231)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHH
Confidence            999999999998888776 677888888888888888888888888888887765 788888888888888888888888


Q ss_pred             HhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043          188 ASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK  258 (539)
Q Consensus       188 ~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  258 (539)
                      +.+. +++..|..|+||||+|+..++.+++++|++.   +..++.+|..|.||||+|+..++.+++++|.+
T Consensus       160 ~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~  226 (231)
T 3aji_A          160 FYKA-STNIQDTEGNTPLHLACDEERVEEAKFLVTQ---GASIYIENKEEKTPLQVAKGGLGLILKRLAEG  226 (231)
T ss_dssp             HTTC-CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred             hcCC-CccccCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc
Confidence            7654 3677777788888888888888888877776   45567777778888888877777777777763

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.6e-36  Score=284.71  Aligned_cols=210  Identities=20%  Similarity=0.282  Sum_probs=138.5

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCC--cccccccCCCCCcHHHHHHH
Q 040043           31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQS--WLMEFEEDRDESTPLHVAIS  108 (539)
Q Consensus        31 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~--~~~~~~~~~~g~t~Lh~A~~  108 (539)
                      |+||||.|++.|+.++++.|++.+++.....+..|.||||+|+..|+.+++++|++++  .+.....+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            6788888888888888888888888776667888888888888888888888888877  33332256667777777777


Q ss_pred             cCCHHHHHHHHhcC--CccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHH
Q 040043          109 RGKIDIVKEILKVR--PSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF  186 (539)
Q Consensus       109 ~g~~~~v~~LL~~~--~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~L  186 (539)
                      .|+.++++.|++.+  ++. +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHHHH
Confidence            77777777777765  333 555666777777777777777777777776666654 66666666666666666666666


Q ss_pred             HHhCCCccccccCCCCcHHHHHHHhCChhHHHHHH-hhcccccccccccCCCCcHHHHHH
Q 040043          187 IASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA-ESFDFTGLLHQQDQFGNTVLHLAI  245 (539)
Q Consensus       187 l~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll-~~~~~~~~~~~~d~~G~T~Lh~A~  245 (539)
                      ++.++.+++..|..|+||||+|+..++.+++++|+ +.   +.+++.+|.+|.||||+|+
T Consensus       160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~---ga~~~~~~~~g~t~l~~A~  216 (228)
T 2dzn_A          160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY---GAEYDLVDNKGAKAEDVAL  216 (228)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH---CCCSCCBCTTSCBGGGGCS
T ss_pred             HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCcHHHHHH
Confidence            66554444555555555555555555555555554 32   2334444445555555443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.5e-35  Score=282.24  Aligned_cols=225  Identities=21%  Similarity=0.318  Sum_probs=205.3

Q ss_pred             cccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHh
Q 040043           59 TLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLH  138 (539)
Q Consensus        59 ~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh  138 (539)
                      +..|.+|.||||+|+..|+.+++++|++++.+++ ..+..|.||||.|+..|+.+++++|++.+.++ +..|..|.||||
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~   82 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLH   82 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHH
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHH
Confidence            4578899999999999999999999999998877 57889999999999999999999999998876 778999999999


Q ss_pred             HHHHcCCHHHHHHHHcCC-CccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHH
Q 040043          139 YASRIGNVEITKLLLNSK-PDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF  217 (539)
Q Consensus       139 ~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v  217 (539)
                      +|+..|+.+++++|++.+ .+++.. +..|.||||.|+..|+.++++.|++.+.+ ++..|..|.||||+|+..|+.+++
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~  160 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQ-DDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIA  160 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHH
Confidence            999999999999999999 555554 89999999999999999999999998754 788899999999999999999999


Q ss_pred             HHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHh
Q 040043          218 IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSEL  291 (539)
Q Consensus       218 ~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l  291 (539)
                      ++|++.   +..++.+|..|+||||+|+..++.+++++|+++ |++++.+|..|+||+++|...++...+..++
T Consensus       161 ~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          161 EILLAA---KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQVWSALQMS  230 (237)
T ss_dssp             HHHHTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHHc---CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999987   567889999999999999999999999999954 9999999999999999999988765544443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.4e-36  Score=286.43  Aligned_cols=227  Identities=18%  Similarity=0.247  Sum_probs=201.4

Q ss_pred             cccccCCChHHHHHHHcCCHHHHHHHHh----CCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCC
Q 040043           59 TLLNQERQSAFLLACRRGHVNVVKLMLN----QSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRC  134 (539)
Q Consensus        59 ~~~~~~g~tpL~~A~~~g~~eiv~~Ll~----~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~  134 (539)
                      +.+|.+|.||||+|+..|+.+++++|++    .+.+++ ..+..|.||||+|+..|+.+++++|++.+.++ +..|..|.
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~   80 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQ   80 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCC
Confidence            4678999999999999999999999997    566665 67889999999999999999999999998887 77899999


Q ss_pred             hHHhHHHHcCCHHHHHHHHcCCC----ccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccc-CCCCcHHHHHH
Q 040043          135 LPLHYASRIGNVEITKLLLNSKP----DMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLT-TDGDTVFHLAL  209 (539)
Q Consensus       135 tpLh~A~~~g~~~~v~~Ll~~~~----~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~Av  209 (539)
                      ||||+|+..|+.+++++|++.++    ++... |..|.||||.|+..|+.++++.|++.+.+ ++..+ ..|.||||+|+
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~  158 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEAR-NYDGLTALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAV  158 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCcccccccc-CcCCCcHHHHHHHcCCHHHHHHHHHcCCC-cccccccCCCcHHHHHH
Confidence            99999999999999999999987    55554 88999999999999999999999998765 56666 78999999999


Q ss_pred             HhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHH
Q 040043          210 RFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSS  289 (539)
Q Consensus       210 ~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~  289 (539)
                      ..++.+++++|++.   +..++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|+||+++|...|..++++.
T Consensus       159 ~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~  234 (241)
T 1k1a_A          159 ENNSLSMVQLLLQH---GANVNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILRG  234 (241)
T ss_dssp             HTTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcCcHHHHhh
Confidence            99999999999997   56789999999999999999999999999995 599999999999999999999988888777


Q ss_pred             Hhhh
Q 040043          290 ELQS  293 (539)
Q Consensus       290 ~l~~  293 (539)
                      +++.
T Consensus       235 l~~~  238 (241)
T 1k1a_A          235 KATR  238 (241)
T ss_dssp             ----
T ss_pred             hccC
Confidence            6654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.2e-35  Score=281.10  Aligned_cols=213  Identities=22%  Similarity=0.251  Sum_probs=195.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcC--CccccccCCCCChHHhHHHH
Q 040043           65 RQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVR--PSFCEQADKNRCLPLHYASR  142 (539)
Q Consensus        65 g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~--~~~~~~~d~~g~tpLh~A~~  142 (539)
                      |.||||.|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.+  ++.....|..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            6899999999999999999999998877668999999999999999999999999998  55544478999999999999


Q ss_pred             cCCHHHHHHHHcCC--CccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHH
Q 040043          143 IGNVEITKLLLNSK--PDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL  220 (539)
Q Consensus       143 ~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~L  220 (539)
                      .|+.+++++|++.|  ++++.. +..|.||||.|+..|+.++++.|++.+ .+++..|..|+||||+|+..|+.+++++|
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcccccC-CcCCCCHHHHHHHcCCHhHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999998  777765 889999999999999999999999886 45788999999999999999999999999


Q ss_pred             HhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHc
Q 040043          221 AESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKES  281 (539)
Q Consensus       221 l~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~  281 (539)
                      ++...  ..++.+|..|+||||+|+..++.+++++|+++.|++++.+|..|+||+++|.+.
T Consensus       160 l~~g~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          160 CGLGK--SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HTTTC--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred             HhcCc--ccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence            98731  568899999999999999999999999999777999999999999999999654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.6e-35  Score=279.49  Aligned_cols=226  Identities=24%  Similarity=0.224  Sum_probs=207.1

Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHH
Q 040043           62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYAS  141 (539)
Q Consensus        62 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~  141 (539)
                      +..+.+|||.|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   81 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAA   81 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHH
Confidence            3457899999999999999999999887665578899999999999999999999999998876 778999999999999


Q ss_pred             HcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHH
Q 040043          142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA  221 (539)
Q Consensus       142 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll  221 (539)
                      ..|+.+++++|+++|++++.. |..|.||||.|+..|+.++++.|++.+.+ ++..|..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  159 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILL  159 (231)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HcCHHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999876 99999999999999999999999988754 7888999999999999999999999999


Q ss_pred             hhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhc
Q 040043          222 ESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSV  294 (539)
Q Consensus       222 ~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~  294 (539)
                      +.   +..++.+|..|+||||+|+..++.+++++|++. |++++.+|..|+||+++|...++.++.+.+++.+
T Consensus       160 ~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~  228 (231)
T 3aji_A          160 FY---KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVAKGGLGLILKRLAEGEE  228 (231)
T ss_dssp             HT---TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred             hc---CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence            87   567889999999999999999999999999955 9999999999999999999888777777766544

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=9e-35  Score=276.72  Aligned_cols=228  Identities=21%  Similarity=0.290  Sum_probs=172.0

Q ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHH
Q 040043           25 AAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLH  104 (539)
Q Consensus        25 ~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh  104 (539)
                      ...|..|.||||.|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++++.......+..|.||||
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence            345777888888888888888888888888776 5567788888888888888888888888887776555666788888


Q ss_pred             HHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCC-HHHH
Q 040043          105 VAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH-VKIL  183 (539)
Q Consensus       105 ~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~-~~~v  183 (539)
                      .|+..|+.++++.|++.+.+. +..|..|.||||+|+..|+.+++++|++.|+++... +..|.||||.|+..++ .+++
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~  159 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM-DQNGMTPLMWAAYRTHSVDPT  159 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHCCSSTTH
T ss_pred             HHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcccc-CCCCCcHHHHHHHhCChHHHH
Confidence            888888888888888877666 566777888888888888888888888887777665 7777888888876555 6666


Q ss_pred             HHHHHhCCCccccccC-CCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhc
Q 040043          184 EAFIASSPTSFNCLTT-DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK  259 (539)
Q Consensus       184 ~~Ll~~~~~~~~~~d~-~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  259 (539)
                      +.|++.+.+ ++..+. .|.||||+|+..++.+++++|++.   +..++.+|..|+||||+|+..++.+++++|++.
T Consensus       160 ~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~  232 (240)
T 3eu9_A          160 RLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEA---GANVDAQNIKGESALDLAKQRKNVWMINHLQEA  232 (240)
T ss_dssp             HHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence            666665544 455554 777777777777777777777776   445667777777777777777777777777743

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.9e-35  Score=288.78  Aligned_cols=244  Identities=17%  Similarity=0.091  Sum_probs=183.5

Q ss_pred             CceecccCcHHHHHHHHHhCCh--hhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQ--LVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHV   78 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~--~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~   78 (539)
                      ||+|++.|+.++|++|++.+..  .++.+|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.
T Consensus        13 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~   91 (282)
T 1oy3_D           13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAH   91 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCc
Confidence            6999999999999999997654  47889999999999999999999999999999987 67899999999999999999


Q ss_pred             HHHHHHHhCCccccc------------ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCH
Q 040043           79 NVVKLMLNQSWLMEF------------EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV  146 (539)
Q Consensus        79 eiv~~Ll~~~~~~~~------------~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~  146 (539)
                      +++++|++++.....            .....+.++++.+...+.......++.......+..|..|.||||+|+..|+.
T Consensus        92 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~  171 (282)
T 1oy3_D           92 TCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA  171 (282)
T ss_dssp             HHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCH
T ss_pred             chhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCH
Confidence            999999998865331            12234556777777666554444444433344577899999999999999999


Q ss_pred             HHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhccc
Q 040043          147 EITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDF  226 (539)
Q Consensus       147 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~  226 (539)
                      +++++|+++|++++...+..|.||||+|+..|+.++++.|++.+. +++.+|..|+||||+|+.+++.+++++|++.   
T Consensus       172 ~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~---  247 (282)
T 1oy3_D          172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA-DPTARMYGGRTPLGSALLRPNPILARLLRAH---  247 (282)
T ss_dssp             HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT---
T ss_pred             HHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC-CCcccccCCCCHHHHHHHcCCcHHHHHHHHc---
Confidence            999999999999998734569999999999999999999999864 5899999999999999999999999999988   


Q ss_pred             ccccccccCCCCcHHHHHHHcCC
Q 040043          227 TGLLHQQDQFGNTVLHLAILRNN  249 (539)
Q Consensus       227 ~~~~~~~d~~G~T~Lh~A~~~~~  249 (539)
                      +..++.+|..|.|||++|....+
T Consensus       248 ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          248 GAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             TCCCCCCC---------------
T ss_pred             CCCcCcCCCcccccccccCCccc
Confidence            66789999999999999987654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.3e-35  Score=290.06  Aligned_cols=262  Identities=21%  Similarity=0.214  Sum_probs=219.3

Q ss_pred             eecccCcHHHHHHHHHhCChh--------hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHH
Q 040043            3 AATGFGHIELVTEIIKLCPQL--------VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACR   74 (539)
Q Consensus         3 ~Aa~~g~~e~v~~Ll~~~~~~--------l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~   74 (539)
                      .+++.|+.+.++.++......        ....+..|.||||.||..|+.+++++|++.|+++ +..|..|.||||+|+.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHH
Confidence            467778888888888875431        1223456789999999999999999999999887 6688999999999999


Q ss_pred             cCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHc
Q 040043           75 RGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLN  154 (539)
Q Consensus        75 ~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~  154 (539)
                      .|+.+++++|++++.+++ ..+..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..++.++++.++.
T Consensus        83 ~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~  160 (299)
T 1s70_B           83 DDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVN  160 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence            999999999999998877 57889999999999999999999999998887 7789999999999999999999988775


Q ss_pred             C-CCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccc
Q 040043          155 S-KPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQ  233 (539)
Q Consensus       155 ~-~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~  233 (539)
                      . +.+.... +..+.++++        ..+..++..+.......+..|.||||+|+..|+.+++++|++.   +..++.+
T Consensus       161 ~~~~~~~~~-~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~d~~~~  228 (299)
T 1s70_B          161 RQGVDIEAA-RKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA---RYDVNIK  228 (299)
T ss_dssp             HHTCCHHHH-HHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT---TCCTTCC
T ss_pred             hcCCCchhh-hhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc---CCCCCCc
Confidence            4 4444332 222333333        3345566676666667788999999999999999999999987   5678999


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHH
Q 040043          234 DQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKE  280 (539)
Q Consensus       234 d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~  280 (539)
                      |..|+||||+|+..|+.+++++|++. |++++.+|..|+||+++|.+
T Consensus       229 d~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          229 DYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTTTSCCS
T ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence            99999999999999999999999955 99999999999999999954

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-35  Score=287.63  Aligned_cols=223  Identities=19%  Similarity=0.225  Sum_probs=135.5

Q ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHH
Q 040043           27 VNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVA  106 (539)
Q Consensus        27 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A  106 (539)
                      +|.++.+||+.||+.|+.++|++|++.+........                           ......+..|.||||.|
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~---------------------------~~~~~~~~~~~t~L~~a   59 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAE---------------------------DTVSAADPEFCHPLCQC   59 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------------------
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCccccccc---------------------------ccccccCccCCCHHHHH
Confidence            455556677777777777777777766654311000                           00012445566777777


Q ss_pred             HHcCCH-HHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHH
Q 040043          107 ISRGKI-DIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEA  185 (539)
Q Consensus       107 ~~~g~~-~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~  185 (539)
                      +..++. .+++.|++.+.++ +..|.+|+||||+|+..|+.+++++|++.++++... +.+|.||+|.|+..++.++++.
T Consensus        60 ~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~-~~~g~t~l~~a~~~~~~~~~~~  137 (269)
T 4b93_B           60 PKCAPAQKRLAKVPASGLGV-NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGAR-NADQAVPLHLACQQGHFQVVKC  137 (269)
T ss_dssp             ---------------CCCCT-TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCcc-CCCCCCccccccccChHHHHHH
Confidence            666554 3566666666665 666777777777777777777777777777777665 7777777777777777777777


Q ss_pred             HHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCcc
Q 040043          186 FIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKN  265 (539)
Q Consensus       186 Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~  265 (539)
                      |++.+.+ ++..|..|+||||+|+..|+.+++++|++.   +.++|.+|..|+||||+|+..|+.+++++|++ .|+|++
T Consensus       138 Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~---gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~  212 (269)
T 4b93_B          138 LLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQH---GASINASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQ  212 (269)
T ss_dssp             HHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHT---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSC
T ss_pred             HHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCC
Confidence            7766543 667777777777777777777777777775   45677778888888888888888888888884 478888


Q ss_pred             ccccCCCCHHHHHHHcCC
Q 040043          266 CRNYTNQTALDVLKESGT  283 (539)
Q Consensus       266 ~~n~~g~t~l~~a~~~~~  283 (539)
                      .+|..|+||||+|++++.
T Consensus       213 ~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          213 VLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             CCCTTSCCSGGGSCTTCH
T ss_pred             CcCCCCCCHHHHHHhCCc
Confidence            888888888888766553

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=7.3e-35  Score=285.91  Aligned_cols=242  Identities=17%  Similarity=0.113  Sum_probs=170.2

Q ss_pred             cccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHH
Q 040043            5 TGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLM   84 (539)
Q Consensus         5 a~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~L   84 (539)
                      ++..+.+.|..++..+ + ++.+|..|.||||+|+..|+.+++++|++.|+++.. .  +|.||||+|+..|+.+++++|
T Consensus         7 i~~~~~~~v~~lL~~~-~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~--~g~t~L~~A~~~g~~~~v~~L   81 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK-D-TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL-L--ENEFPLHQAATLEDTKIVKIL   81 (285)
T ss_dssp             GGGCCHHHHHHHHHST-T-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC-C--TTCCHHHHHTTSSSCHHHHHH
T ss_pred             HHhcCHHHHHHHHHhC-C-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-C--CCCCHHHHHHHcCCHHHHHHH
Confidence            3444555555555443 2 577888888888888888888888888888877633 2  478888888888888888888


Q ss_pred             HhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCC-ChHHhHHHHcCCHHHHHHHHcCCCcccccc
Q 040043           85 LNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNR-CLPLHYASRIGNVEITKLLLNSKPDMALQY  163 (539)
Q Consensus        85 l~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~  163 (539)
                      ++++.+++ ..+..|.||||+|+..|+.+++++|++.++++ +..|..| .||||+|+..|+.+++++|+++|++...  
T Consensus        82 l~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--  157 (285)
T 3kea_A           82 LFSGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--  157 (285)
T ss_dssp             HHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--
T ss_pred             HHCCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--
Confidence            88887766 46777888888888888888888888877766 6667777 6888888888888888888877776532  


Q ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcH-HHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHH
Q 040043          164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTV-FHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLH  242 (539)
Q Consensus       164 d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh  242 (539)
                      ...|.||||+|+..|+.++++.|++.+. +++..|..|+|| ||+|+..++.+++++|++.   +..++.+|       +
T Consensus       158 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-d~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~---gad~~~~~-------~  226 (285)
T 3kea_A          158 LAILLSCIHITIKNGHVDMMILLLDYMT-STNTNNSLLFIPDIKLAIDNKDIEMLQALFKY---DINIYSAN-------L  226 (285)
T ss_dssp             CSTHHHHHHHHHHTTCHHHHHHHHHHHH-HTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS---CBCSTTTT-------G
T ss_pred             ccCCccHHHHHHHcChHHHHHHHHHcCC-CCCcccCCCCChHHHHHHHcCCHHHHHHHHHc---CCCCCCCC-------h
Confidence            1267777777777777777777777653 356666677776 7777777777777777665   44455555       2


Q ss_pred             HHHHcCCHHHHHHHhhccccCcccc
Q 040043          243 LAILRNNYQLAEYIIKKTKVDKNCR  267 (539)
Q Consensus       243 ~A~~~~~~~iv~~Ll~~~~~~~~~~  267 (539)
                      .|+..++.+++++|+++ |++++..
T Consensus       227 ~a~~~~~~~iv~~Ll~~-g~~~~~~  250 (285)
T 3kea_A          227 ENVLLDDAEIAKMIIEK-HVEYKSD  250 (285)
T ss_dssp             GGGTTTCHHHHHHHHHH-HHHHTTC
T ss_pred             hhhhcCCHHHHHHHHHc-CCCCCCc
Confidence            44556677777777743 5555443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=9.3e-34  Score=269.69  Aligned_cols=231  Identities=20%  Similarity=0.271  Sum_probs=210.4

Q ss_pred             ccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhH
Q 040043           60 LLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHY  139 (539)
Q Consensus        60 ~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~  139 (539)
                      ..|..|.|||+.|+..|+.+++++|++.+.+++ ..+..|.||||.|+..|+.+++++|++.+++.....+..|.||||+
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~   82 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW   82 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence            457789999999999999999999999998876 5788999999999999999999999999998877777779999999


Q ss_pred             HHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCC-hhHHH
Q 040043          140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK-YNAFI  218 (539)
Q Consensus       140 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~-~~~v~  218 (539)
                      |+..|+.+++++|++.|+++... +..|.||||.|+..|+.++++.|++.+. .++..+..|.||||+|+..++ .++++
T Consensus        83 A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~  160 (240)
T 3eu9_A           83 ATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQ-DVDMMDQNGMTPLMWAAYRTHSVDPTR  160 (240)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHCCSSTTHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCHHHHHHHHHhcCC-CccccCCCCCcHHHHHHHhCChHHHHH
Confidence            99999999999999999999876 8999999999999999999999999875 478899999999999997776 88999


Q ss_pred             HHHhhcccccccccccC-CCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCC
Q 040043          219 FLAESFDFTGLLHQQDQ-FGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEP  297 (539)
Q Consensus       219 ~Ll~~~~~~~~~~~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~  297 (539)
                      +|++.   +..++..+. .|+||||+|+..++.+++++|++. |++++.+|..|+||+++|.+.++.++++.+++.+.+.
T Consensus       161 ~L~~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          161 LLLTF---NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             HHHHT---TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             HHHhc---CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            99887   556777886 999999999999999999999965 9999999999999999999999999999999876554

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-35  Score=285.76  Aligned_cols=209  Identities=19%  Similarity=0.203  Sum_probs=151.5

Q ss_pred             cccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHH
Q 040043           61 LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYA  140 (539)
Q Consensus        61 ~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A  140 (539)
                      +|..+.+||+.||..|+.++|++|++.+......                           .....+..|..|.||||.|
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~---------------------------~~~~~~~~~~~~~t~L~~a   59 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED---------------------------AEDTVSAADPEFCHPLCQC   59 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------------------
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCccccc---------------------------ccccccccCccCCCHHHHH
Confidence            4566667777777777777777777766543200                           0111245678899999999


Q ss_pred             HHcCCH-HHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHH
Q 040043          141 SRIGNV-EITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIF  219 (539)
Q Consensus       141 ~~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~  219 (539)
                      +..++. .+++.|++.|++++.. |.+|+||||+|+..|+.++++.|++.+.+ ++..+.+|.||+|.|+..++.+++++
T Consensus        60 ~~~~~~~~~v~~Ll~~Gadvn~~-d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~  137 (269)
T 4b93_B           60 PKCAPAQKRLAKVPASGLGVNVT-SQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKC  137 (269)
T ss_dssp             ---------------CCCCTTCC-CTTSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHhCCHHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHH
Confidence            988876 4889999999999886 99999999999999999999999988754 78889999999999999999999999


Q ss_pred             HHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCC
Q 040043          220 LAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNG  299 (539)
Q Consensus       220 Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~  299 (539)
                      |++.   +..++.+|..|+||||+|+..|+.+++++|++ .|+++|.+|..|.||||+|+..|+.++++.+++.+++++.
T Consensus       138 Ll~~---g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~  213 (269)
T 4b93_B          138 LLDS---NAKPNKKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV  213 (269)
T ss_dssp             HHHT---TCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             HHHC---CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            9987   56789999999999999999999999999995 5999999999999999999999999999999999888765


Q ss_pred             Cch
Q 040043          300 SPK  302 (539)
Q Consensus       300 ~~~  302 (539)
                      ...
T Consensus       214 ~d~  216 (269)
T 4b93_B          214 LNK  216 (269)
T ss_dssp             CCT
T ss_pred             cCC
Confidence            443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.2e-34  Score=270.43  Aligned_cols=211  Identities=18%  Similarity=0.215  Sum_probs=112.7

Q ss_pred             CCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 040043           42 GNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKV  121 (539)
Q Consensus        42 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~  121 (539)
                      |+.+++++|++.++++....|..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..|+.+++++|++.
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            344445555555554444444455555555555555555555555544443 3444555555555555555555555555


Q ss_pred             CCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCC
Q 040043          122 RPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDG  201 (539)
Q Consensus       122 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g  201 (539)
                      ++...+..+..|.||||+|+..|+.+++++|++.+++++.. |..|.||||+|+..|+.++++.|++.+. +++..|..|
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g  158 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGA-NKDMQNNRE  158 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTC
T ss_pred             CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCc-CCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCC
Confidence            54333455555555555555555555555555555555544 5555555555555555555555555532 344555555


Q ss_pred             CcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043          202 DTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK  258 (539)
Q Consensus       202 ~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  258 (539)
                      .||||+|+..++.+++++|++.   +..++.+|..|.||||+|+..++.+++++|++
T Consensus       159 ~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~  212 (223)
T 2f8y_A          159 ETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHHDIVRLLDE  212 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCHHHHHHHcCCHHHHHHHHHc---CCCCccccccCCCHHHHHHHhcchHHHHHHHH
Confidence            5555555555555555555554   33445555666666666666666666666653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.7e-34  Score=270.88  Aligned_cols=214  Identities=17%  Similarity=0.182  Sum_probs=196.3

Q ss_pred             CcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhC
Q 040043            8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ   87 (539)
Q Consensus         8 g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~   87 (539)
                      |+.+++++|++.+++.....|..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|+++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            78899999999999876777999999999999999999999999999887 66899999999999999999999999999


Q ss_pred             CcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCC
Q 040043           88 SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNG  167 (539)
Q Consensus        88 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g  167 (539)
                      +.......+..|.||||+|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++++.. |..|
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g  158 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-NNRE  158 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTC
T ss_pred             CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCC
Confidence            87444467889999999999999999999999998887 788999999999999999999999999999999886 9999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcc
Q 040043          168 YTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFD  225 (539)
Q Consensus       168 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~  225 (539)
                      .||||+|+..|+.++++.|++.+.+ ++..|..|.||||+|+..++.+++++|++...
T Consensus       159 ~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          159 ETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            9999999999999999999998754 78899999999999999999999999998743

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-35  Score=297.30  Aligned_cols=258  Identities=16%  Similarity=0.113  Sum_probs=204.8

Q ss_pred             cccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccc----------------cccCCChH
Q 040043            5 TGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATL----------------LNQERQSA   68 (539)
Q Consensus         5 a~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~----------------~~~~g~tp   68 (539)
                      ......++|++|++.+.+ ++..|..|.|+++     |+.++++.|+++|.+....                ......+.
T Consensus        27 ~~~~~~dlv~~ll~~ga~-i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  100 (327)
T 1sw6_A           27 IITFTHDLTSDFLSSPLK-IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQ  100 (327)
T ss_dssp             EEECCTTCCCSTTTSSCC-CEECBCCCCCCCH-----HHHHHHHHHHHHHHC----------------------------
T ss_pred             hhhhcCchHHHHhhCCcc-cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccch
Confidence            334556788999999888 7889999999988     9999999999988654210                11112234


Q ss_pred             HHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCC---
Q 040043           69 FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGN---  145 (539)
Q Consensus        69 L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~---  145 (539)
                      +|+|+..+..++++.|++.+.+++...|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+   
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~  179 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYD  179 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHH
T ss_pred             hHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhccccc
Confidence            588888888999999999999888447999999999999999999999999999887 7889999999999999998   


Q ss_pred             HHHHHHHHcCC-CccccccccCCCCHHHHHHH----cCCHHHHHHHHHhC-------------------CCccccccCCC
Q 040043          146 VEITKLLLNSK-PDMALQYNNNGYTPLHQAAI----NGHVKILEAFIASS-------------------PTSFNCLTTDG  201 (539)
Q Consensus       146 ~~~v~~Ll~~~-~~~~~~~d~~g~tpLh~Aa~----~g~~~~v~~Ll~~~-------------------~~~~~~~d~~g  201 (539)
                      .++++.|++.+ ++++.. |..|+||||+|+.    .|+.++++.|++..                   ...++..+..|
T Consensus       180 ~~~~~~ll~~~~~~~~~~-d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g  258 (327)
T 1sw6_A          180 SGTFEALLDYLYPCLILE-DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER  258 (327)
T ss_dssp             TTCHHHHHHHHGGGGGEE-CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred             HHHHHHHHHhhhccccCC-CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence            67777777776 455554 9999999999999    89999999999873                   45678889999


Q ss_pred             CcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHc
Q 040043          202 DTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKES  281 (539)
Q Consensus       202 ~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~  281 (539)
                      .||||.|+.      +++|++.     .++.+|..|+||||+|+..|+.+++++|++. |+|++.+|..|+||||+|++.
T Consensus       259 ~t~L~~a~~------~~~Ll~~-----~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          259 KDSILENLD------LKWIIAN-----MLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             -CHHHHHCS------HHHHHHH-----TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTCC-
T ss_pred             CChhHHHHH------HHHHHHh-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhc
Confidence            999999985      8888876     4889999999999999999999999999954 999999999999999999765


Q ss_pred             C
Q 040043          282 G  282 (539)
Q Consensus       282 ~  282 (539)
                      |
T Consensus       327 g  327 (327)
T 1sw6_A          327 E  327 (327)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.7e-33  Score=276.20  Aligned_cols=237  Identities=19%  Similarity=0.208  Sum_probs=208.3

Q ss_pred             HcCCH-HHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040043           40 RQGNA-EISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEI  118 (539)
Q Consensus        40 ~~g~~-~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L  118 (539)
                      +..+. ++.++|.+.+   .+..|..|.||||+|+..|+.+++++|++++.+++..   +|.||||+|+..|+.+++++|
T Consensus         8 ~~~~~~~v~~lL~~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~L   81 (285)
T 3kea_A            8 NTWKSKQLKSFLSSKD---TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKIL   81 (285)
T ss_dssp             GGCCHHHHHHHHHSTT---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHH
T ss_pred             HhcCHHHHHHHHHhCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHH
Confidence            33444 4555555543   3678999999999999999999999999999887732   599999999999999999999


Q ss_pred             HhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCC-CCHHHHHHHcCCHHHHHHHHHhCCCccccc
Q 040043          119 LKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNG-YTPLHQAAINGHVKILEAFIASSPTSFNCL  197 (539)
Q Consensus       119 L~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~  197 (539)
                      ++.++++ +..|..|+||||+|+..|+.+++++|+++|++++.. +..| .||||+|+..|+.++++.|++.++..   .
T Consensus        82 l~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~  156 (285)
T 3kea_A           82 LFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---F  156 (285)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC-SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---C
T ss_pred             HHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCcc-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---c
Confidence            9999887 778999999999999999999999999999999876 8888 89999999999999999999998664   3


Q ss_pred             cC-CCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcH-HHHHHHcCCHHHHHHHhhccccCccccccCCCCHH
Q 040043          198 TT-DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTV-LHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL  275 (539)
Q Consensus       198 d~-~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~-Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l  275 (539)
                      +. .|+||||+|+..|+.+++++|++.   +..++.+|..|+|| ||+|+..++.+++++|++. |++++.+|.      
T Consensus       157 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~-gad~~~~~~------  226 (285)
T 3kea_A          157 DLAILLSCIHITIKNGHVDMMILLLDY---MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-DINIYSANL------  226 (285)
T ss_dssp             CCSTHHHHHHHHHHTTCHHHHHHHHHH---HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS-CBCSTTTTG------
T ss_pred             cccCCccHHHHHHHcChHHHHHHHHHc---CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCh------
Confidence            33 899999999999999999999998   56789999999998 9999999999999999955 999999985      


Q ss_pred             HHHHHcCCchhhHHHhhhccCCC
Q 040043          276 DVLKESGTKEAFSSELQSVEEPN  298 (539)
Q Consensus       276 ~~a~~~~~~~~~~~~l~~~~~~~  298 (539)
                       .+...|+.++++.+++.+.+..
T Consensus       227 -~a~~~~~~~iv~~Ll~~g~~~~  248 (285)
T 3kea_A          227 -ENVLLDDAEIAKMIIEKHVEYK  248 (285)
T ss_dssp             -GGGTTTCHHHHHHHHHHHHHHT
T ss_pred             -hhhhcCCHHHHHHHHHcCCCCC
Confidence             3456789999999999876643

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.6e-34  Score=282.62  Aligned_cols=242  Identities=21%  Similarity=0.234  Sum_probs=205.5

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||.||..|+.++|++|++.+.+ ++..|..|.||||+||..|+.+++++|++.|+++ +..|..|.||||+|+..|+.++
T Consensus        44 l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~  121 (299)
T 1s70_B           44 FLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDI  121 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHH
Confidence            5889999999999999999987 7889999999999999999999999999999887 6689999999999999999999


Q ss_pred             HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccc
Q 040043           81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA  160 (539)
Q Consensus        81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  160 (539)
                      +++|++++.++. ..+..|.||||+|+..++.++++.++.......+..+..+.++++        ..++.++..+....
T Consensus       122 v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~  192 (299)
T 1s70_B          122 AEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------RDARQWLNSGHIND  192 (299)
T ss_dssp             HHHHHHTTCCTT-CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCC
T ss_pred             HHHHHhCCCCCC-CcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcch
Confidence            999999998877 678899999999999999999999987654433433333334433        33455666666665


Q ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcH
Q 040043          161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTV  240 (539)
Q Consensus       161 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~  240 (539)
                      ...+..|.||||+|+..|+.++++.|++.+. +++..|..|+||||+|+..|+.+++++|++.   +..++.+|..|+||
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~  268 (299)
T 1s70_B          193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARY-DVNIKDYDGWTPLHAAAHWGKEEACRILVEN---LCDMEAVNKVGQTA  268 (299)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCT
T ss_pred             hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHhcCCHHHHHHHHHc---CCCCCCcCCCCCCH
Confidence            5568899999999999999999999998764 4788999999999999999999999999997   56788999999999


Q ss_pred             HHHHHHcCCHHHHHHHhh
Q 040043          241 LHLAILRNNYQLAEYIIK  258 (539)
Q Consensus       241 Lh~A~~~~~~~iv~~Ll~  258 (539)
                      ||+|+.. ..+.++.+++
T Consensus       269 l~~A~~~-~~~~l~~l~~  285 (299)
T 1s70_B          269 FDVADED-ILGYLEELQK  285 (299)
T ss_dssp             TTSCCSG-GGHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHH
Confidence            9999754 3455555553

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.7e-31  Score=253.37  Aligned_cols=197  Identities=20%  Similarity=0.242  Sum_probs=128.3

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhc-CcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccc----cccCCCCCcHHH
Q 040043           30 KLETPLHEACRQGNAEISALLLKT-NLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME----FEEDRDESTPLH  104 (539)
Q Consensus        30 ~g~TpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~----~~~~~~g~t~Lh  104 (539)
                      .|+||||.|++.|+.++++.|++. +.++ +..|..|.||||+|+..|+.+++++|++++++..    ...+..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            588999999999999999999987 5555 6678889999999999999999999998887653    234567888888


Q ss_pred             HHHHcCCHHHHHHHHhcCCccccccCC-------------CCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHH
Q 040043          105 VAISRGKIDIVKEILKVRPSFCEQADK-------------NRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPL  171 (539)
Q Consensus       105 ~A~~~g~~~~v~~LL~~~~~~~~~~d~-------------~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  171 (539)
                      +|+..|+.+++++|++.+.+. +..+.             .|.||||+|+..|+.+++++|+++|++++.. |..|.|||
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~t~L  158 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ-DSLGNTVL  158 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHH
Confidence            888888888888888877665 33332             3555555555555555555555555544443 44455555


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccc---cccccccCCCCcHHHHHHHcC
Q 040043          172 HQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFT---GLLHQQDQFGNTVLHLAILRN  248 (539)
Q Consensus       172 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~---~~~~~~d~~G~T~Lh~A~~~~  248 (539)
                      |+|+..|+.+++..                              ++++|++.....   ...+.+|..|+||||+|+..|
T Consensus       159 ~~A~~~~~~~~~~~------------------------------i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g  208 (232)
T 2rfa_A          159 HILILQPNKTFACQ------------------------------MYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG  208 (232)
T ss_dssp             HHHHTCSCHHHHHH------------------------------HHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHcCChHHHHH------------------------------HHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcC
Confidence            55555554444400                              004444432211   112466677777777777777


Q ss_pred             CHHHHHHHhhc
Q 040043          249 NYQLAEYIIKK  259 (539)
Q Consensus       249 ~~~iv~~Ll~~  259 (539)
                      +.+++++|+++
T Consensus       209 ~~~~v~~Ll~~  219 (232)
T 2rfa_A          209 NIVMFQHLMQK  219 (232)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHhc
Confidence            77777777744

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=4.2e-33  Score=265.35  Aligned_cols=214  Identities=18%  Similarity=0.196  Sum_probs=137.5

Q ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhcCcc---cccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcH
Q 040043           26 AVNEKLETPLHEACRQGNAEISALLLKTNLF---VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTP  102 (539)
Q Consensus        26 ~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~---~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~  102 (539)
                      .+|..|+||||+|+..|+.++++.|++.+..   ..+..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCH
Confidence            4678899999999999999998888887653   236677788888888888888888888888887766 466777888


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCc-----cccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcccccccc-CCCCHHHHHHH
Q 040043          103 LHVAISRGKIDIVKEILKVRPS-----FCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN-NGYTPLHQAAI  176 (539)
Q Consensus       103 Lh~A~~~g~~~~v~~LL~~~~~-----~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~tpLh~Aa~  176 (539)
                      ||+|+..|+.++++.|++.+++     ..+..|..|.||||+|+..|+.+++++|+++|++++.. +. .|.||||+|+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ-EPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCCHHHHHHH
Confidence            8888888888888888776643     23445555666666666666666666666666655554 33 55555555555


Q ss_pred             cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHH
Q 040043          177 NGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI  256 (539)
Q Consensus       177 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L  256 (539)
                      .|+.++++.|++.+                                     ..++.+|..|+||||+|+..++.+++++|
T Consensus       161 ~~~~~~v~~Ll~~g-------------------------------------a~~~~~~~~g~tpl~~A~~~~~~~~~~~L  203 (236)
T 1ikn_D          161 LQNPDLVSLLLKCG-------------------------------------ADVNRVTYQGYSPYQLTWGRPSTRIQQQL  203 (236)
T ss_dssp             TTCHHHHHHHHTTT-------------------------------------CCSCCCCTTCCCGGGGCTTSSCHHHHHHH
T ss_pred             cCCHHHHHHHHHcC-------------------------------------CCCCcccCCCCCHHHHHHccCchHHHHHH
Confidence            55555555555443                                     33455555666666666666666666666


Q ss_pred             hhccccCcc--ccccCCCCHHHHHH
Q 040043          257 IKKTKVDKN--CRNYTNQTALDVLK  279 (539)
Q Consensus       257 l~~~~~~~~--~~n~~g~t~l~~a~  279 (539)
                      ++. |++..  .++.+|.||.+.+.
T Consensus       204 l~~-ga~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          204 GQL-TLENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             HTT-SCGGGSSCCCCCTTTCCCCC-
T ss_pred             HHc-chhhhhcCCccchHHHHhhhc
Confidence            633 55444  55666666655443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=9e-31  Score=242.53  Aligned_cols=191  Identities=19%  Similarity=0.240  Sum_probs=122.9

Q ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHH
Q 040043           29 EKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAIS  108 (539)
Q Consensus        29 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  108 (539)
                      ..+.||||.|+..|+.+.++.|++.++...+..|.+|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHH
Confidence            4677888888888888888888877764446667777777777777777777777777777665 456667777777777


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCC-CccccccccCCCCHHHHHHHcCC-----HHH
Q 040043          109 RGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSK-PDMALQYNNNGYTPLHQAAINGH-----VKI  182 (539)
Q Consensus       109 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~g~tpLh~Aa~~g~-----~~~  182 (539)
                      .|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+ .+++.. |..|.||||+|+..++     .++
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~~~  160 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ-NDFGYTALIEAVGLREGNQLYQDI  160 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCC-CTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCCCCHHHHHHHhccchhhHHHH
Confidence            777777777775555444566666666666666666666666666666 444443 5666666666666555     555


Q ss_pred             HHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHh
Q 040043          183 LEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAE  222 (539)
Q Consensus       183 v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~  222 (539)
                      ++.|++.+.+ ++..|..|+||||+|+..|+.+++++|++
T Consensus       161 v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          161 VKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             HHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            5555554422 34444445555555555555555544443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.7e-32  Score=261.16  Aligned_cols=199  Identities=24%  Similarity=0.262  Sum_probs=168.5

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCc---cccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHH
Q 040043           95 EDRDESTPLHVAISRGKIDIVKEILKVRPS---FCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPL  171 (539)
Q Consensus        95 ~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~---~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  171 (539)
                      .|.+|.||||+|+..|+.++++.|++.++.   ..+..|..|+||||+|+..|+.+++++|+++|++++.. |..|.|||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L   82 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPL   82 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCC-CTTCCCHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHH
Confidence            566778888888888887777777776553   34777888899999999999999999999998888776 88899999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCC-----ccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccC-CCCcHHHHHH
Q 040043          172 HQAAINGHVKILEAFIASSPT-----SFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQ-FGNTVLHLAI  245 (539)
Q Consensus       172 h~Aa~~g~~~~v~~Ll~~~~~-----~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~-~G~T~Lh~A~  245 (539)
                      |+|+..|+.++++.|++.++.     .++..+..|.||||+|+..|+.+++++|++.   +..++.+|. .|+||||+|+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~~g~tpL~~A~  159 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL---GADVNAQEPCNGRTALHLAV  159 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH---TCCTTCCCTTTCCCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCCHHHHHH
Confidence            999999999999999887743     3577788999999999999999999999987   567888887 9999999999


Q ss_pred             HcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCC
Q 040043          246 LRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPN  298 (539)
Q Consensus       246 ~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~  298 (539)
                      ..++.+++++|++. |++++.+|..|+||+++|...++.++++.+++.++++.
T Consensus       160 ~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          160 DLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             HTTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             HcCCHHHHHHHHHc-CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            99999999999955 99999999999999999999999999999999877543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1.1e-30  Score=242.08  Aligned_cols=191  Identities=23%  Similarity=0.279  Sum_probs=106.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHc
Q 040043           98 DESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAIN  177 (539)
Q Consensus        98 ~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~  177 (539)
                      .+.||||.|+..|+.+.++.|++.++...+..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~   82 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHT
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHc
Confidence            34555555555555555555555554333455555555555555555555555555555555543 55555555555555


Q ss_pred             CCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCC-----HHH
Q 040043          178 GHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNN-----YQL  252 (539)
Q Consensus       178 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~-----~~i  252 (539)
                      |+.++++.|++..+..++..|..|.||||+|+..++.+++++|++...  ..++.+|..|+||||+|+..++     .++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~  160 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR--EDIDFQNDFGYTALIEAVGLREGNQLYQDI  160 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC--CCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC--CCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence            555555555555544555555555555555555555555555555421  2355555555555555555554     555


Q ss_pred             HHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhh
Q 040043          253 AEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQ  292 (539)
Q Consensus       253 v~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~  292 (539)
                      +++|++. |++++.+|..|+||+++|...|+.++++.+++
T Consensus       161 v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          161 VKLLMEN-GADQSIKDNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             HHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            5555533 55555555556666666655555555555544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=2.5e-32  Score=273.29  Aligned_cols=230  Identities=13%  Similarity=0.057  Sum_probs=182.7

Q ss_pred             ecccCcHHHHHHHHHhCChhhhc-----------------cccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCC
Q 040043            4 ATGFGHIELVTEIIKLCPQLVAA-----------------VNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQ   66 (539)
Q Consensus         4 Aa~~g~~e~v~~Ll~~~~~~l~~-----------------~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~   66 (539)
                      ++..|+.++|+.|++.+.+. +.                 +.....+.+|.|+..+..++++.|++.+.++....|..|.
T Consensus        54 ~~~~g~~~~v~~Ll~~g~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~  132 (327)
T 1sw6_A           54 VNDNEQKMKLEAFLQRLLFP-EIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGN  132 (327)
T ss_dssp             CCCHHHHHHHHHHHHHHHC--------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCC
T ss_pred             cccCchhHHHHHHHHhccCC-ccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCC
Confidence            45569999999999986321 11                 1112223468888888999999999999988444899999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCC---HHHHHHHHhcCCccccccCCCCChHHhHHHH-
Q 040043           67 SAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGK---IDIVKEILKVRPSFCEQADKNRCLPLHYASR-  142 (539)
Q Consensus        67 tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~-  142 (539)
                      ||||+|+..|+.++|++|+++|++++ ..|..|.||||+|+..|+   .++++.|++.+....+..|..|+||||+|+. 
T Consensus       133 TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~  211 (327)
T 1sw6_A          133 TPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIIT  211 (327)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHH
Confidence            99999999999999999999999987 688999999999999998   6888888888755568899999999999999 


Q ss_pred             ---cCCHHHHHHHHcC--------------------CCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccC
Q 040043          143 ---IGNVEITKLLLNS--------------------KPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT  199 (539)
Q Consensus       143 ---~g~~~~v~~Ll~~--------------------~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~  199 (539)
                         .|+.+++++|++.                    |++++.. +..|.||||.|+.      ++.|++.   .++..|.
T Consensus       212 ~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~-~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~  281 (327)
T 1sw6_A          212 SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK-NGERKDSILENLD------LKWIIAN---MLNAQDS  281 (327)
T ss_dssp             HTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHH---TTTCCCT
T ss_pred             ccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccc-cccCCChhHHHHH------HHHHHHh---CCCCCCC
Confidence               8999999999987                    7777766 8999999999996      7888887   3788999


Q ss_pred             CCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcC
Q 040043          200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRN  248 (539)
Q Consensus       200 ~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~  248 (539)
                      .|+||||+|+.+|+.+++++|++.   +.+++.+|.+|+||||+|++.|
T Consensus       282 ~G~TpLh~A~~~g~~~~v~~Ll~~---Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          282 NGDTCLNIAARLGNISIVDALLDY---GADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHHT---TCCTTCCCTTSCCGGGGTCC--
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHhcC
Confidence            999999999999999999999987   6679999999999999998654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.5e-30  Score=253.46  Aligned_cols=223  Identities=18%  Similarity=0.234  Sum_probs=144.0

Q ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHhc----Cccccc---ccccCCChHHHHHHHc---CCHHHHHHHHhCCccccc
Q 040043           24 VAAVNEKLETPLHEACRQGNAEISALLLKT----NLFVAT---LLNQERQSAFLLACRR---GHVNVVKLMLNQSWLMEF   93 (539)
Q Consensus        24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~----~~~~~~---~~~~~g~tpL~~A~~~---g~~eiv~~Ll~~~~~~~~   93 (539)
                      .+..|..|+||||.||+.|+.++++.|++.    +.++..   ..+..|.||||+|+..   |+.+++++|++++++...
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            345777888888888888888877777763    333211   3466777777777765   777777777777654320


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcccccccc--------
Q 040043           94 EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN--------  165 (539)
Q Consensus        94 ~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~--------  165 (539)
                                           ++.++...   ....|..|+||||+|+..|+.+++++|+++|++++.. +.        
T Consensus        86 ---------------------~~~~i~~~---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~  140 (273)
T 2pnn_A           86 ---------------------LKQFVNAS---YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA-ANGDFFKKTK  140 (273)
T ss_dssp             ---------------------HHHHHTCC---CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-BCSGGGSSCS
T ss_pred             ---------------------hhHHhhcc---cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-cccccccccc
Confidence                                 01111111   1224556777777777777777777777777776665 43        


Q ss_pred             ------CCCCHHHHHHHcCCHHHHHHHHHh--CCCccccccCCCCcHHHHHHHhCC---------hhHHHHHHhhccccc
Q 040043          166 ------NGYTPLHQAAINGHVKILEAFIAS--SPTSFNCLTTDGDTVFHLALRFGK---------YNAFIFLAESFDFTG  228 (539)
Q Consensus       166 ------~g~tpLh~Aa~~g~~~~v~~Ll~~--~~~~~~~~d~~g~t~Lh~Av~~~~---------~~~v~~Ll~~~~~~~  228 (539)
                            .|.||||+|+..|+.++++.|++.  .+.+++.+|.+|+||||+|+..++         .+++++|++.+   .
T Consensus       141 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g---a  217 (273)
T 2pnn_A          141 GRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG---A  217 (273)
T ss_dssp             SSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH---H
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh---h
Confidence                  688888888888888888888873  345577788888888888888777         67888887763   3


Q ss_pred             cc-------ccccCCCCcHHHHHHHcCCHHHHHHHhhcccc-CccccccCCCCHH
Q 040043          229 LL-------HQQDQFGNTVLHLAILRNNYQLAEYIIKKTKV-DKNCRNYTNQTAL  275 (539)
Q Consensus       229 ~~-------~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~-~~~~~n~~g~t~l  275 (539)
                      .+       +.+|..|+||||+|+..|+.+++++|+++ |+ |+......+.+|-
T Consensus       218 ~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR-EIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HTC-------------
T ss_pred             hcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC-CCCCchhhhhhhhhcc
Confidence            34       35888899999999999999999999865 55 7777776666553

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=3.4e-30  Score=248.35  Aligned_cols=201  Identities=17%  Similarity=0.205  Sum_probs=122.0

Q ss_pred             CCCHHHHHHHcCCHH----HHHHHHhcCccccc---ccccCCChHHHHHHHc---CCHHHHHHHHhCCcccccccCCCCC
Q 040043           31 LETPLHEACRQGNAE----ISALLLKTNLFVAT---LLNQERQSAFLLACRR---GHVNVVKLMLNQSWLMEFEEDRDES  100 (539)
Q Consensus        31 g~TpLh~Aa~~g~~~----iv~~Ll~~~~~~~~---~~~~~g~tpL~~A~~~---g~~eiv~~Ll~~~~~~~~~~~~~g~  100 (539)
                      |+||||.||..|+.+    ++++|++.+.++..   ..|..|.||||+|+..   |+.+++++|++++.+.....     
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~-----   76 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPK-----   76 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSS-----
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchh-----
Confidence            677778888777776    55566666766632   2567777777777777   77777777777665543110     


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccC-------------C
Q 040043          101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNN-------------G  167 (539)
Q Consensus       101 t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-------------g  167 (539)
                                      .++..   .....|..|.||||+|+..|+.+++++|+++|++++.. +..             |
T Consensus        77 ----------------~~~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~~~g  136 (256)
T 2etb_A           77 ----------------PLVNA---QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR-ACGRFFQKHQGTCFYFG  136 (256)
T ss_dssp             ----------------CGGGC---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CCSGGGSCCSSSCCCSC
T ss_pred             ----------------hhccc---ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-cccccccccccccccCC
Confidence                            00000   00123445666666666666666666666666666554 333             6


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHh--CCCccccccCCCCcHHHHHHH--hCChh-------HHHHHHhhccccccc------
Q 040043          168 YTPLHQAAINGHVKILEAFIAS--SPTSFNCLTTDGDTVFHLALR--FGKYN-------AFIFLAESFDFTGLL------  230 (539)
Q Consensus       168 ~tpLh~Aa~~g~~~~v~~Ll~~--~~~~~~~~d~~g~t~Lh~Av~--~~~~~-------~v~~Ll~~~~~~~~~------  230 (539)
                      .||||+|+..|+.++++.|++.  .+.+++..|.+|+||||+|+.  .++.+       ++++|++.   +..+      
T Consensus       137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~---ga~~~~~~~~  213 (256)
T 2etb_A          137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM---GARLCPTVQL  213 (256)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---HHHHSTTCCG
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc---CCCccccccc
Confidence            6666666666666666666662  233455566666666666665  45555       66666665   2333      


Q ss_pred             -ccccCCCCcHHHHHHHcCCHHHHHHHhhc
Q 040043          231 -HQQDQFGNTVLHLAILRNNYQLAEYIIKK  259 (539)
Q Consensus       231 -~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  259 (539)
                       +.+|..|+||||+|+..|+.+++++|+++
T Consensus       214 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  243 (256)
T 2etb_A          214 EEISNHQGLTPLKLAAKEGKIEIFRHILQR  243 (256)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence             66777777777777777777777777744

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2e-30  Score=249.96  Aligned_cols=186  Identities=20%  Similarity=0.193  Sum_probs=121.9

Q ss_pred             CceecccCcHH----HHHHHHHhCChhhhc----cccCCCCHHHHHHHc---CCHHHHHHHHhcCcccccc---------
Q 040043            1 IKAATGFGHIE----LVTEIIKLCPQLVAA----VNEKLETPLHEACRQ---GNAEISALLLKTNLFVATL---------   60 (539)
Q Consensus         1 Lh~Aa~~g~~e----~v~~Ll~~~~~~l~~----~n~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~---------   60 (539)
                      ||.||+.|+.+    ++++|++.+.+ ++.    +|..|.||||+|+..   |+.+++++|++.+++....         
T Consensus         6 L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~   84 (256)
T 2etb_A            6 LFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT   84 (256)
T ss_dssp             HHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence            68999999998    55666667776 565    899999999999999   9999999999998876322         


Q ss_pred             -cccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCC-------------CCcHHHHHHHcCCHHHHHHHHh---cCC
Q 040043           61 -LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRD-------------ESTPLHVAISRGKIDIVKEILK---VRP  123 (539)
Q Consensus        61 -~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~-------------g~t~Lh~A~~~g~~~~v~~LL~---~~~  123 (539)
                       .|..|.||||+|+..|+.+++++|++++++++ ..+..             |.||||+|+..|+.+++++|++   .+.
T Consensus        85 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga  163 (256)
T 2etb_A           85 DEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA  163 (256)
T ss_dssp             STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             cccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence             23668888888888888888888888887776 33333             5555555555555555555555   444


Q ss_pred             ccccccCCCCChHHhHHHH--cCCHH-------HHHHHHcCCCcc-------ccccccCCCCHHHHHHHcCCHHHHHHHH
Q 040043          124 SFCEQADKNRCLPLHYASR--IGNVE-------ITKLLLNSKPDM-------ALQYNNNGYTPLHQAAINGHVKILEAFI  187 (539)
Q Consensus       124 ~~~~~~d~~g~tpLh~A~~--~g~~~-------~v~~Ll~~~~~~-------~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll  187 (539)
                      ++ +..|..|+||||+|+.  .++.+       ++++|+++|+++       +.. |..|.||||+|+..|+.++++.|+
T Consensus       164 ~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~-d~~g~tpL~~A~~~g~~~~v~~Ll  241 (256)
T 2etb_A          164 SL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS-NHQGLTPLKLAAKEGKIEIFRHIL  241 (256)
T ss_dssp             CT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCC-CTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             Cc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccccc-CCCCCCHHHHHHHhCCHHHHHHHH
Confidence            43 4445555555555555  44444       555555555544       222 444555555555555555555544


Q ss_pred             HhC
Q 040043          188 ASS  190 (539)
Q Consensus       188 ~~~  190 (539)
                      +++
T Consensus       242 ~~g  244 (256)
T 2etb_A          242 QRE  244 (256)
T ss_dssp             HHH
T ss_pred             hCC
Confidence            443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=6.5e-30  Score=229.93  Aligned_cols=155  Identities=26%  Similarity=0.398  Sum_probs=119.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHH
Q 040043           34 PLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKID  113 (539)
Q Consensus        34 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~  113 (539)
                      +|+.||+.|+.++|+.|++.|+++ +.+|.+|.||||+|+..++.+++++|++++.+++ ..|.+|.||||+|+..|+.+
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccCCCCHHHHHHHcCCHH
Confidence            577788888888888888877776 5677778888888888888888888888777766 56777788888888888888


Q ss_pred             HHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q 040043          114 IVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPT  192 (539)
Q Consensus       114 ~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  192 (539)
                      +++.|++.++++ +.+|.+|+||||+|+..|+.+++++|++.|++++.. |.+|+||||+|++.|+.++++.|++++.+
T Consensus        85 ~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A           85 VVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS-DSDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             HHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            888888877776 667777888888888888888888888888777765 77788888888888888888877776644

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2.1e-30  Score=252.31  Aligned_cols=202  Identities=19%  Similarity=0.201  Sum_probs=137.6

Q ss_pred             CceecccCcHHHHHHHHHhC----Chh---hhccccCCCCHHHHHHHc---CCHHHHHHHHhcCcccc------c----c
Q 040043            1 IKAATGFGHIELVTEIIKLC----PQL---VAAVNEKLETPLHEACRQ---GNAEISALLLKTNLFVA------T----L   60 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~----~~~---l~~~n~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~------~----~   60 (539)
                      ||.|++.|+.++|+.|++.+    ...   ....|..|.||||+|+..   |+.+++++|++.+++..      +    .
T Consensus        17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~   96 (273)
T 2pnn_A           17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTD   96 (273)
T ss_dssp             HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCS
T ss_pred             HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccccc
Confidence            68999999999999999842    221   114688999999999987   99999999999987531      1    1


Q ss_pred             cccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCC--------------CCCcHHHHHHHcCCHHHHHHHHh---cCC
Q 040043           61 LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDR--------------DESTPLHVAISRGKIDIVKEILK---VRP  123 (539)
Q Consensus        61 ~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~--------------~g~t~Lh~A~~~g~~~~v~~LL~---~~~  123 (539)
                      .|..|.||||+|+..|+.+++++|++++++++. .+.              .|.||||+|+..|+.+++++|++   .+.
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga  175 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQA-AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA  175 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC
Confidence            456788888888888888888888888887763 333              56677777777777777777776   555


Q ss_pred             ccccccCCCCChHHhHHHHcCC---------HHHHHHHHcCCCcccc------ccccCCCCHHHHHHHcCCHHHHHHHHH
Q 040043          124 SFCEQADKNRCLPLHYASRIGN---------VEITKLLLNSKPDMAL------QYNNNGYTPLHQAAINGHVKILEAFIA  188 (539)
Q Consensus       124 ~~~~~~d~~g~tpLh~A~~~g~---------~~~v~~Ll~~~~~~~~------~~d~~g~tpLh~Aa~~g~~~~v~~Ll~  188 (539)
                      ++ +..|..|+||||+|+..|+         .+++++|+++|++++.      ..|..|.||||+|+..|+.++++.|++
T Consensus       176 d~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  254 (273)
T 2pnn_A          176 DI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ  254 (273)
T ss_dssp             CT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             Cc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHH
Confidence            54 5666667777777776666         5666667766666642      236666666666666666666666666


Q ss_pred             hCCCccccccCCCCcH
Q 040043          189 SSPTSFNCLTTDGDTV  204 (539)
Q Consensus       189 ~~~~~~~~~d~~g~t~  204 (539)
                      ++..+.......+.+|
T Consensus       255 ~ga~dp~~~~~~~~~~  270 (273)
T 2pnn_A          255 REIHEPECRHAAAHHH  270 (273)
T ss_dssp             HHTC------------
T ss_pred             CCCCCchhhhhhhhhc
Confidence            6654444444444443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=4.6e-29  Score=224.37  Aligned_cols=155  Identities=28%  Similarity=0.396  Sum_probs=87.2

Q ss_pred             ceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHH
Q 040043            2 KAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVV   81 (539)
Q Consensus         2 h~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv   81 (539)
                      +.||+.|+.++|+.|++.+.+ ++.+|..|.||||+|+..|+.++++.|++.++++ +.+|.+|.||||+|+..|+.+++
T Consensus         9 ~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~~v   86 (169)
T 4gpm_A            9 IEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVV   86 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCHHHH
Confidence            445555666666666655555 4555555666666666666666666666555554 44555555666666666666666


Q ss_pred             HHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccc
Q 040043           82 KLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA  160 (539)
Q Consensus        82 ~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  160 (539)
                      ++|++++++++ ..|.+|.||||+|+..|+.++++.|++.++++ +..|.+|+||||+|+..|+.+++++|+++|+++.
T Consensus        87 ~~Ll~~gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A           87 KLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             HHHHHCcCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            66665555554 34555556666666666666666666555554 4555555666666666666666666665555543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=4e-29  Score=241.34  Aligned_cols=207  Identities=15%  Similarity=0.132  Sum_probs=128.4

Q ss_pred             ccCCCCHHHHHHHcCCHHHHHHHH----hcCcccccc---cccCCChHHHHHH---HcCCHHHHHHHHhCCcccccccCC
Q 040043           28 NEKLETPLHEACRQGNAEISALLL----KTNLFVATL---LNQERQSAFLLAC---RRGHVNVVKLMLNQSWLMEFEEDR   97 (539)
Q Consensus        28 n~~g~TpLh~Aa~~g~~~iv~~Ll----~~~~~~~~~---~~~~g~tpL~~A~---~~g~~eiv~~Ll~~~~~~~~~~~~   97 (539)
                      |..|+||||.||+.|+.+.++.|+    +.+.++...   .+..|.||||+|+   ..|+.+++++|++.+.+....   
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~---   78 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM---   78 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH---
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch---
Confidence            456777777777777777444443    366555221   1255777777776   557777777777665433200   


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccc-------------
Q 040043           98 DESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYN-------------  164 (539)
Q Consensus        98 ~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-------------  164 (539)
                                        ..++.  . ..+..|..|+||||+|+..|+.+++++|+++|++++.. +             
T Consensus        79 ------------------~~~~~--~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~  136 (260)
T 3jxi_A           79 ------------------REFIN--S-PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ-ARGRFFQPKDEGGY  136 (260)
T ss_dssp             ------------------HHHHT--C-CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CEECCCSSSCCCCS
T ss_pred             ------------------Hhhhc--c-cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc-ccccccCccccccc
Confidence                              00111  1 12344557888888888888888888888888877765 4             


Q ss_pred             -cCCCCHHHHHHHcCCHHHHHHHHHh--CCCccccccCCCCcHHHHHHHhCC---------hhHHHHHHhhcccc----c
Q 040043          165 -NNGYTPLHQAAINGHVKILEAFIAS--SPTSFNCLTTDGDTVFHLALRFGK---------YNAFIFLAESFDFT----G  228 (539)
Q Consensus       165 -~~g~tpLh~Aa~~g~~~~v~~Ll~~--~~~~~~~~d~~g~t~Lh~Av~~~~---------~~~v~~Ll~~~~~~----~  228 (539)
                       ..|.||||+|+..|+.++++.|++.  .+.+++..|..|+||||+|+..++         .+++++|++.+...    .
T Consensus       137 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~  216 (260)
T 3jxi_A          137 FYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN  216 (260)
T ss_dssp             CCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccc
Confidence             4577777777777777777777763  234466666667777777766655         46666666652210    0


Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHhhc
Q 040043          229 LLHQQDQFGNTVLHLAILRNNYQLAEYIIKK  259 (539)
Q Consensus       229 ~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  259 (539)
                      ..+.+|..|+||||+|+..|+.+++++|+++
T Consensus       217 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  247 (260)
T 3jxi_A          217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIRR  247 (260)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            1155677777777777777777777777754

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=8e-29  Score=241.68  Aligned_cols=196  Identities=18%  Similarity=0.251  Sum_probs=169.6

Q ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhcCcc-cccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHH
Q 040043           28 NEKLETPLHEACRQGNAEISALLLKTNLF-VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVA  106 (539)
Q Consensus        28 n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A  106 (539)
                      +..+.+++|.|+..|+.+.++.+++.+.+ ..+..|.+|.||||+|+..|+.+++++|++.+.......+..|.||||+|
T Consensus        73 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a  152 (276)
T 4hbd_A           73 RLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT  152 (276)
T ss_dssp             HHHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence            34567889999999999999999887654 23678889999999999999999999999999833336788999999999


Q ss_pred             H-----HcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHH
Q 040043          107 I-----SRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVK  181 (539)
Q Consensus       107 ~-----~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~  181 (539)
                      +     ..++.++++.|++.+... +..|..|+||||+|+..|+.+++++|++.|++++.. |.+|+||||+|+..|+.+
T Consensus       153 ~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~-d~~G~TpLh~A~~~g~~~  230 (276)
T 4hbd_A          153 ALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEHGHKE  230 (276)
T ss_dssp             GGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHH
T ss_pred             HHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHCCCHH
Confidence            9     668889999999988665 677888999999999999999999999999998876 899999999999999999


Q ss_pred             HHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcc
Q 040043          182 ILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFD  225 (539)
Q Consensus       182 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~  225 (539)
                      +++.|++..+.+++..|..|+||||+|+..|+.+++++|++...
T Consensus       231 iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          231 IAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            99999985666788899999999999999999999999998754

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=3.6e-29  Score=241.68  Aligned_cols=188  Identities=19%  Similarity=0.201  Sum_probs=129.6

Q ss_pred             CceecccCcHHHHHHHHH----hCChhhhccc----cCCCCHHHHHH---HcCCHHHHHHHHhcCccc----------cc
Q 040043            1 IKAATGFGHIELVTEIIK----LCPQLVAAVN----EKLETPLHEAC---RQGNAEISALLLKTNLFV----------AT   59 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~----~~~~~l~~~n----~~g~TpLh~Aa---~~g~~~iv~~Ll~~~~~~----------~~   59 (539)
                      ||.|++.|+.+.|+.|++    .+.+ ++..+    ..|.||||+|+   +.|+.+++++|++.+++.          ..
T Consensus         9 L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~   87 (260)
T 3jxi_A            9 LFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR   87 (260)
T ss_dssp             HHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence            688999999997666666    6665 44444    77999999999   779999999999987542          12


Q ss_pred             ccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccC--------------CCCCcHHHHHHHcCCHHHHHHHHh---cC
Q 040043           60 LLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEED--------------RDESTPLHVAISRGKIDIVKEILK---VR  122 (539)
Q Consensus        60 ~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~--------------~~g~t~Lh~A~~~g~~~~v~~LL~---~~  122 (539)
                      ..|..|.||||+|+..|+.+++++|++++++++. .+              ..|.||||+|+..|+.+++++|++   .+
T Consensus        88 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  166 (260)
T 3jxi_A           88 DVYYRGQTALHIAIERRCKHYVELLVEKGADVHA-QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ  166 (260)
T ss_dssp             CSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc-cccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence            3345788888888888888888888888877763 33              356666666666666666666666   45


Q ss_pred             CccccccCCCCChHHhHHHHcCC---------HHHHHHHHcCCCccc------cccccCCCCHHHHHHHcCCHHHHHHHH
Q 040043          123 PSFCEQADKNRCLPLHYASRIGN---------VEITKLLLNSKPDMA------LQYNNNGYTPLHQAAINGHVKILEAFI  187 (539)
Q Consensus       123 ~~~~~~~d~~g~tpLh~A~~~g~---------~~~v~~Ll~~~~~~~------~~~d~~g~tpLh~Aa~~g~~~~v~~Ll  187 (539)
                      .++ +..|..|+||||+|+..++         .+++++|+++|++++      ...|..|.||||+|+..|+.++++.|+
T Consensus       167 a~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  245 (260)
T 3jxi_A          167 ADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII  245 (260)
T ss_dssp             CCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            544 5556666666666666555         466666666666552      122556666666666666666666666


Q ss_pred             HhCC
Q 040043          188 ASSP  191 (539)
Q Consensus       188 ~~~~  191 (539)
                      ++++
T Consensus       246 ~~g~  249 (260)
T 3jxi_A          246 RREI  249 (260)
T ss_dssp             HHHH
T ss_pred             HhCC
Confidence            5553

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=2.3e-28  Score=238.41  Aligned_cols=194  Identities=19%  Similarity=0.231  Sum_probs=174.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCcc--cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHH
Q 040043           64 ERQSAFLLACRRGHVNVVKLMLNQSWL--MEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYAS  141 (539)
Q Consensus        64 ~g~tpL~~A~~~g~~eiv~~Ll~~~~~--~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~  141 (539)
                      .+.+++|.|+..|+.+.++.+++...+  ++ ..|.+|.||||+|+..|+.++++.|++.++...+..|..|.||||+|+
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n-~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~  153 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVN-IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA  153 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHhhcCc-CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence            345788999999999999999887554  33 578899999999999999999999999998566889999999999999


Q ss_pred             -----HcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhH
Q 040043          142 -----RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNA  216 (539)
Q Consensus       142 -----~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~  216 (539)
                           ..++.++++.|++.|...... +..|.||||+|+..|+.++++.|++.+. +++..|.+|+||||+|+..|+.++
T Consensus       154 ~~~~~~~~~~~~v~~Ll~~g~~~~~~-~~~g~tpLh~A~~~g~~~~v~~Ll~~ga-d~n~~d~~G~TpLh~A~~~g~~~i  231 (276)
T 4hbd_A          154 LATLKTQDDIETVLQLFRLGNINAKA-SQAGQTALMLAVSHGRVDVVKALLACEA-DVNVQDDDGSTALMCACEHGHKEI  231 (276)
T ss_dssp             GCCCCSHHHHHHHHHHHHHSCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHhhhhhhHHHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCCCCCHHHHHHHCCCHHH
Confidence                 668899999999999877765 8899999999999999999999999875 488999999999999999999999


Q ss_pred             HHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhcccc
Q 040043          217 FIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKV  262 (539)
Q Consensus       217 v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~  262 (539)
                      +++|++.  .+.+++.+|.+|+||||+|+..|+.+++++|+++.++
T Consensus       232 v~~Ll~~--~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i  275 (276)
T 4hbd_A          232 AGLLLAV--PSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI  275 (276)
T ss_dssp             HHHHHTS--TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred             HHHHHhc--CCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence            9999982  2567899999999999999999999999999987665

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=8.2e-28  Score=221.16  Aligned_cols=163  Identities=22%  Similarity=0.258  Sum_probs=122.8

Q ss_pred             hhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcH
Q 040043           23 LVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTP  102 (539)
Q Consensus        23 ~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~  102 (539)
                      +++.+|..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~  104 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKTP  104 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcH
Confidence            45667778888888888888888888888877665 5567777888888888888888888887777665 456677777


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHH
Q 040043          103 LHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKI  182 (539)
Q Consensus       103 Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~  182 (539)
                      ||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~~  182 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR-DLTGLTAEASARIFGRQEV  182 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhCcHHH
Confidence            77777777777777777777665 666777777777777777777777777777777665 7777777777777777777


Q ss_pred             HHHHHHh
Q 040043          183 LEAFIAS  189 (539)
Q Consensus       183 v~~Ll~~  189 (539)
                      ++.|++.
T Consensus       183 v~~Ll~~  189 (192)
T 2rfm_A          183 IKIFTEV  189 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            7777654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=2.8e-30  Score=261.62  Aligned_cols=245  Identities=14%  Similarity=0.131  Sum_probs=169.6

Q ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhcCccc--ccccccCCChHHHHHHHcCCHHHHHHHHhCCcccc--cccCCCCCcH
Q 040043           27 VNEKLETPLHEACRQGNAEISALLLKTNLFV--ATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME--FEEDRDESTP  102 (539)
Q Consensus        27 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~--~~~~~~g~t~  102 (539)
                      .+.+++||||+||+.|+.+++++|++.++..  ....+..|.||||+|+..|+.++|++|++++++..  ...+.+ .||
T Consensus        88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp  166 (376)
T 2aja_A           88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA  166 (376)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred             cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence            3445679999999999999999999998622  12345678899999999999999999999996421  011222 899


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCcccc-ccCCCCChHHhHHH-HcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCH
Q 040043          103 LHVAISRGKIDIVKEILKVRPSFCE-QADKNRCLPLHYAS-RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHV  180 (539)
Q Consensus       103 Lh~A~~~g~~~~v~~LL~~~~~~~~-~~d~~g~tpLh~A~-~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~  180 (539)
                      ||+|+..|+.+++++|++.+++... ..|..|.||||+|+ ..|+.+++++|++.|+        .|.||||.|+.+|+.
T Consensus       167 Lh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~  238 (376)
T 2aja_A          167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEK  238 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTT
T ss_pred             HHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCH
Confidence            9999999999999999999988632 26788999999999 9999999999999663        277999999999999


Q ss_pred             HHHHHHHHhCCCccccccCCCCcHHHHHHHhCChh---------------------------HHHHHHhhccccccc--c
Q 040043          181 KILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYN---------------------------AFIFLAESFDFTGLL--H  231 (539)
Q Consensus       181 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~---------------------------~v~~Ll~~~~~~~~~--~  231 (539)
                      +++++|++.+.+ ++..+    ++++.|+.+|+.+                           .+++|++........  .
T Consensus       239 evv~lL~~~ga~-~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g  313 (376)
T 2aja_A          239 YVNPFIARHVNR-LKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA  313 (376)
T ss_dssp             THHHHHHHHHHH-HHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCC
T ss_pred             HHHHHHHhcCcc-ccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccC
Confidence            999999987643 22222    2344444444443                           344444322111111  2


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHH
Q 040043          232 QQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSS  289 (539)
Q Consensus       232 ~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~  289 (539)
                      ..+..++||||+|+..|+.+++++|++.    ...++..|+||+++|...|..+..+.
T Consensus       314 ~~~n~~~~~L~~A~~~g~~e~v~lLl~~----~~v~~~~~~~~~~~~~~~~~~~~~~~  367 (376)
T 2aja_A          314 TIPGDANELLRLALRLGNQGACALLLSI----PSVLALTKANNYYINETGGRLDLRAV  367 (376)
T ss_dssp             SSTTCCCHHHHHHHHHTCTTHHHHHTTS----HHHHHSCC------------------
T ss_pred             CCCCCccHHHHHHHHcCcHHHHHHHHcC----hHHHHHHHHhccccccccccccHHHH
Confidence            2345688999999999999999999954    47889999999999999887665443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=1.3e-27  Score=215.72  Aligned_cols=158  Identities=21%  Similarity=0.252  Sum_probs=113.0

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcC
Q 040043           31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRG  110 (539)
Q Consensus        31 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  110 (539)
                      +.||||.|+..|+.++++.|++.++...+..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhcccCCCHHHHHHHCC
Confidence            35778888888888888888887777556677777777777777777777777777776665 45666777777777777


Q ss_pred             CHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhC
Q 040043          111 KIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASS  190 (539)
Q Consensus       111 ~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~  190 (539)
                      +.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|+++.
T Consensus        81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           81 YTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE-ADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            777777777766665 566667777777777777777777777777766654 666777777777777777777666655


Q ss_pred             C
Q 040043          191 P  191 (539)
Q Consensus       191 ~  191 (539)
                      .
T Consensus       159 ~  159 (172)
T 3v30_A          159 L  159 (172)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=1.6e-27  Score=215.05  Aligned_cols=169  Identities=20%  Similarity=0.253  Sum_probs=120.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCC
Q 040043          100 STPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH  179 (539)
Q Consensus       100 ~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~  179 (539)
                      .+|||.|+..|+.++++.|++.++...+..|..|+||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL-AKERESALSLASTGGY   81 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTTC
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh-cccCCCHHHHHHHCCC
Confidence            467777777777777777777776655667777777777777777777777777777776665 6777777777777777


Q ss_pred             HHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhc
Q 040043          180 VKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK  259 (539)
Q Consensus       180 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  259 (539)
                      .++++.|++.+. +++..|..|+||||+|+..++.+++++|++.   +..++.+|..|+||||+|+..++.+++++|++ 
T Consensus        82 ~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~-  156 (172)
T 3v30_A           82 TDIVGLLLERDV-DINIYDWNGGTPLLYAVRGNHVKCVEALLAR---GADLTTEADSGYTPMDLAVALGYRKVQQVIEN-  156 (172)
T ss_dssp             HHHHHHHHTTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-
T ss_pred             HHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHhCcHHHHHHHHH-
Confidence            777777776653 3666777777777777777777777777776   45577788888888888888888888888884 


Q ss_pred             cccCccccccCCCCH
Q 040043          260 TKVDKNCRNYTNQTA  274 (539)
Q Consensus       260 ~~~~~~~~n~~g~t~  274 (539)
                      .++++..+|..|.||
T Consensus       157 ~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          157 HILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHSCC-------
T ss_pred             HHHHHhcccCCCCCC
Confidence            477777777777776

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=3.2e-27  Score=211.99  Aligned_cols=158  Identities=22%  Similarity=0.300  Sum_probs=133.8

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHc
Q 040043           30 KLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISR  109 (539)
Q Consensus        30 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  109 (539)
                      .|.||||.|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||.|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHc
Confidence            5789999999999999999999888765 6678889999999999999999999998887776 5677888888888888


Q ss_pred             CCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHh
Q 040043          110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS  189 (539)
Q Consensus       110 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~  189 (539)
                      |+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|+++
T Consensus        80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE-TDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             TCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            8888888888888776 677888888888888888888888888888888775 88888888888888888888888876


Q ss_pred             CC
Q 040043          190 SP  191 (539)
Q Consensus       190 ~~  191 (539)
                      ..
T Consensus       158 ~~  159 (167)
T 3v31_A          158 LL  159 (167)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=6e-27  Score=208.95  Aligned_cols=157  Identities=21%  Similarity=0.295  Sum_probs=96.2

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHc
Q 040043           30 KLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISR  109 (539)
Q Consensus        30 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  109 (539)
                      ...||||.|+..|+.+++++|++.+.++ +..+..|.||||+|+. |+.+++++|++++.+++ ..+..|.||||.|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHc
Confidence            3456667777777777777766666655 4456666666666666 66666666666665554 3455666666666666


Q ss_pred             CCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHh
Q 040043          110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS  189 (539)
Q Consensus       110 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~  189 (539)
                      |+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++.....|..|.||||+|+..|+.++++.|+++
T Consensus        81 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            6666666666655554 455566666666666666666666666666654223355666666666666666666666655


Q ss_pred             C
Q 040043          190 S  190 (539)
Q Consensus       190 ~  190 (539)
                      +
T Consensus       160 G  160 (162)
T 1ihb_A          160 G  160 (162)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=1.3e-26  Score=208.55  Aligned_cols=159  Identities=26%  Similarity=0.362  Sum_probs=116.2

Q ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHH
Q 040043           27 VNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVA  106 (539)
Q Consensus        27 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A  106 (539)
                      ....+.||||.||+.|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||.|
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   87 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLA   87 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHH
Confidence            3445567788888888888888888877766 4567777788888888888888888877776665 4566777777777


Q ss_pred             HHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHH
Q 040043          107 ISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF  186 (539)
Q Consensus       107 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~L  186 (539)
                      +..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~L  165 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL  165 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHhCCHHHHHHH
Confidence            7777777777777777665 566777777777777777777777777777776655 77777777777777777777777


Q ss_pred             HHh
Q 040043          187 IAS  189 (539)
Q Consensus       187 l~~  189 (539)
                      ++.
T Consensus       166 ~~~  168 (169)
T 2y1l_E          166 QKL  168 (169)
T ss_dssp             HTC
T ss_pred             HHc
Confidence            653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=1.9e-26  Score=211.99  Aligned_cols=160  Identities=21%  Similarity=0.308  Sum_probs=89.8

Q ss_pred             cccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHh
Q 040043           59 TLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLH  138 (539)
Q Consensus        59 ~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh  138 (539)
                      +.+|..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..|+.+++++|++.++++ +..|..|.||||
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~  106 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLM  106 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence            3455566666666666666666666666555444 34555666666666666666666666655554 445555566666


Q ss_pred             HHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHH
Q 040043          139 YASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFI  218 (539)
Q Consensus       139 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~  218 (539)
                      +|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|++.+. +++..|..|.||||+|+..++.++++
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~~~~~~~v~  184 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGANVNDR-NLEGETPLIVASKYGRSEIVKKLLELGA-DISARDLTGLTAEASARIFGRQEVIK  184 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHhCcHHHHH
Confidence            666666666666666555555544 5555555555555555555555555432 24444455555555555555555555


Q ss_pred             HHHh
Q 040043          219 FLAE  222 (539)
Q Consensus       219 ~Ll~  222 (539)
                      +|++
T Consensus       185 ~Ll~  188 (192)
T 2rfm_A          185 IFTE  188 (192)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5444

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=2.9e-26  Score=204.44  Aligned_cols=156  Identities=22%  Similarity=0.366  Sum_probs=108.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHc
Q 040043           64 ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRI  143 (539)
Q Consensus        64 ~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~  143 (539)
                      ...||||.|+..|+.+++++|++++.+++ ..+..|.||||+|+. |+.+++++|++.+.++ +..|..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            34577777777777777777777776665 456677777777777 7777777777776665 56677777777777777


Q ss_pred             CCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhh
Q 040043          144 GNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES  223 (539)
Q Consensus       144 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~  223 (539)
                      |+.+++++|+++|++++.. |.+|.||||+|+..|+.++++.|++.+++.++..|..|+||||+|+..++.+++++|++.
T Consensus        81 ~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             TCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            7777777777777776655 667777777777777777777777766655556666666666666666666666666554

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=2.8e-26  Score=202.81  Aligned_cols=150  Identities=24%  Similarity=0.337  Sum_probs=103.9

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCC
Q 040043           32 ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGK  111 (539)
Q Consensus        32 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~  111 (539)
                      .||||.|++.|+.+++++|++.+++..  .+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCh
Confidence            467777777777777777777776542  46667777777777777777777777766655 456667777777777777


Q ss_pred             HHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHH
Q 040043          112 IDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF  186 (539)
Q Consensus       112 ~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~L  186 (539)
                      .+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|
T Consensus        80 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHHHh
Confidence            77777777766665 556666777777777777777777777777666654 66677777777777777666654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=7.8e-27  Score=209.00  Aligned_cols=160  Identities=26%  Similarity=0.340  Sum_probs=115.2

Q ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHH
Q 040043           27 VNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVA  106 (539)
Q Consensus        27 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A  106 (539)
                      .|..|+||||.|++.|+.++++.|++.++......+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-AKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC-ccCCCCCCHHHHH
Confidence            466677888888888888888888876655555666777788888888888888887777777665 4566777777777


Q ss_pred             HHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHH
Q 040043          107 ISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF  186 (539)
Q Consensus       107 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~L  186 (539)
                      +..|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|+++|++++.. |.+|.||||+|+. |+.+++++|
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCTGGGSCT-TCHHHHHHH
T ss_pred             HHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCChhHhHhc-CChHHHHHH
Confidence            7777777777777776665 566777777777777777777777777777776665 7777777777555 667777776


Q ss_pred             HHhC
Q 040043          187 IASS  190 (539)
Q Consensus       187 l~~~  190 (539)
                      ++.+
T Consensus       160 ~~~g  163 (165)
T 3twr_A          160 RGDA  163 (165)
T ss_dssp             HTC-
T ss_pred             hhcc
Confidence            6543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=2.6e-26  Score=206.62  Aligned_cols=152  Identities=26%  Similarity=0.329  Sum_probs=142.8

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||.||+.|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.++
T Consensus        18 l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~   95 (169)
T 2y1l_E           18 LLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEI   95 (169)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHH
Confidence            5789999999999999999887 7889999999999999999999999999999887 6688999999999999999999


Q ss_pred             HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCC
Q 040043           81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSK  156 (539)
Q Consensus        81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~  156 (539)
                      +++|++++.+++ ..+..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.|
T Consensus        96 ~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           96 VEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999998887 67889999999999999999999999999887 788999999999999999999999999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=8.3e-26  Score=202.71  Aligned_cols=153  Identities=18%  Similarity=0.235  Sum_probs=74.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcC
Q 040043           99 ESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAING  178 (539)
Q Consensus        99 g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g  178 (539)
                      |.||||.|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..|
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLACSKG   80 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHT
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcC
Confidence            444555555555555555555444332 444445555555555555555555555555444443 444555555555555


Q ss_pred             CHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHh
Q 040043          179 HVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYII  257 (539)
Q Consensus       179 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll  257 (539)
                      +.++++.|++.+.+ ++..|..|.||||+|+..++.+++++|++.   +..++.+|..|+||||+|+..++.+++++|+
T Consensus        81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           81 YTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLES---GADPTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             CHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            55555555544322 344444444444444444444444444443   2334444555555555555555555555554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=2e-29  Score=238.73  Aligned_cols=189  Identities=14%  Similarity=0.078  Sum_probs=114.3

Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHH
Q 040043           62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYAS  141 (539)
Q Consensus        62 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~  141 (539)
                      +.++.||||.|+..|+.+++++|++.+.+++ ..|..|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+
T Consensus        18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~   95 (229)
T 2vge_A           18 RLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAA   95 (229)
T ss_dssp             TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             ccchhHHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHH
Confidence            3445555666666666666666666555544 35556666666666666666666666665554 555666666666666


Q ss_pred             HcCCHHHHHHHHcCCCccccccccCCCCHHHHH--HHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHH
Q 040043          142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQA--AINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIF  219 (539)
Q Consensus       142 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A--a~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~  219 (539)
                      ..|+.+++++|++.|++++...+.+|.||||+|  +..|+.++++.|++.+.+ ++..|..|.+++|.++..+..   ++
T Consensus        96 ~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~l~~~~~~~~~---~~  171 (229)
T 2vge_A           96 SCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAEFGD---EL  171 (229)
T ss_dssp             HTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEEESSCBCCSSTT---BC
T ss_pred             HcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchHHHHHHhhcccc---cc
Confidence            666666666666666666655335666666666  666666666666665532 555566666666644433322   23


Q ss_pred             HHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHh
Q 040043          220 LAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYII  257 (539)
Q Consensus       220 Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll  257 (539)
                      |++.+. ...++.+|.+|+||||+|+..|+.++|+.++
T Consensus       172 ll~~ga-~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          172 SFREGE-SVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             CBCTTC-EEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             Cccccc-cccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            333311 1236777888888888888888887776543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=5.1e-26  Score=206.70  Aligned_cols=161  Identities=24%  Similarity=0.360  Sum_probs=128.8

Q ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHH
Q 040043           29 EKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAIS  108 (539)
Q Consensus        29 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  108 (539)
                      ..+.+|||.||..|+.++++.|++.++...+..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence            4577888888888888888888888666667778888888888888888888888888887776 567788888888888


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHH
Q 040043          109 RGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA  188 (539)
Q Consensus       109 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~  188 (539)
                      .|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..++.++++.|++
T Consensus        82 ~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC-NKYGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBC-CTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchh-ccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            88888888888887776 677788888888888888888888888888887765 8888888888888888888888877


Q ss_pred             hCCC
Q 040043          189 SSPT  192 (539)
Q Consensus       189 ~~~~  192 (539)
                      .+.+
T Consensus       160 ~g~~  163 (179)
T 3f6q_A          160 MGQN  163 (179)
T ss_dssp             TTCC
T ss_pred             hhcC
Confidence            7654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=6.7e-26  Score=200.86  Aligned_cols=153  Identities=22%  Similarity=0.327  Sum_probs=85.7

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcC
Q 040043           31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRG  110 (539)
Q Consensus        31 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  110 (539)
                      |.||||.|+..|+.++++.|++......+..+..|.||||+ +..|+.+++++|++++.+++ ..|..|.||||.|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcC
Confidence            34566666666666666666665222334455556666666 55666666666666655544 34555555555555555


Q ss_pred             CHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHH
Q 040043          111 KIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA  188 (539)
Q Consensus       111 ~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~  188 (539)
                      +.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++. ++++.. |.+|.||||+|+..|+.++++.|++
T Consensus        80 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~-~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRR-DARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCC-CTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            555555555555444 44455555555555555555555555555 444443 5555555555555555555555543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=1.8e-25  Score=197.57  Aligned_cols=150  Identities=23%  Similarity=0.324  Sum_probs=87.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCC
Q 040043           66 QSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGN  145 (539)
Q Consensus        66 ~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~  145 (539)
                      .+||+.|+..|+.+++++|++++.+..  .+..|.||||.|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCh
Confidence            456666666666666666666665443  4555666666666666666666666655554 4555566666666666666


Q ss_pred             HHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHH
Q 040043          146 VEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL  220 (539)
Q Consensus       146 ~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~L  220 (539)
                      .+++++|+++|++++.. |..|.||||+|+..|+.++++.|++.+. +++..|..|+||||+|+.+|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYGA-DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            66666666666665544 5556666666666666666665555532 2444455555555555555555554443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=7e-26  Score=205.80  Aligned_cols=168  Identities=21%  Similarity=0.278  Sum_probs=121.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHc
Q 040043           98 DESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAIN  177 (539)
Q Consensus        98 ~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~  177 (539)
                      ++.++||.|+..|+.++++.|++.++...+..|..|+||||+|+..|+.+++++|++.|++++.. |..|.||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM-NRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHc
Confidence            45667777777777777777777766555677777777777777777777777777777777665 77777777777777


Q ss_pred             CCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHh
Q 040043          178 GHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYII  257 (539)
Q Consensus       178 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll  257 (539)
                      |+.++++.|++.+. +++..|..|+||||+|+..++.+++++|++.   +..++.+|..|.||||+|+..++.+++++|+
T Consensus        83 ~~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           83 GHRDIVQKLLQYKA-DINAVNEHGNVPLHYACFWGQDQVAEDLVAN---GALVSICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             TCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            77777777777653 3666777777777777777777777777766   4556777788888888888777777787777


Q ss_pred             hccccCccccccCC
Q 040043          258 KKTKVDKNCRNYTN  271 (539)
Q Consensus       258 ~~~~~~~~~~n~~g  271 (539)
                       +.|++++..+.++
T Consensus       159 -~~g~~~~~~~~~~  171 (179)
T 3f6q_A          159 -KMGQNLNRIPYKD  171 (179)
T ss_dssp             -HTTCCCSCBCCCC
T ss_pred             -HhhcCcccCCccc
Confidence             3477777665544

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=8.4e-29  Score=250.77  Aligned_cols=237  Identities=13%  Similarity=0.115  Sum_probs=165.6

Q ss_pred             CceecccCcHHHHHHHHHhCCh--hhhccccCCCCHHHHHHHcCCHHHHHHHHhcCccc--ccccccCCChHHHHHHHcC
Q 040043            1 IKAATGFGHIELVTEIIKLCPQ--LVAAVNEKLETPLHEACRQGNAEISALLLKTNLFV--ATLLNQERQSAFLLACRRG   76 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~--~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g   76 (539)
                      ||.||+.|+.++|++|++.+..  .....|..|.||||+||..|+.++|++|++.|++.  .+..+.+ .||||+|+..|
T Consensus        96 Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G  174 (376)
T 2aja_A           96 CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENG  174 (376)
T ss_dssp             HHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCC
Confidence            6899999999999999998752  12245667889999999999999999999999642  1222333 89999999999


Q ss_pred             CHHHHHHHHhCCccccc-ccCCCCCcHHHHHH-HcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHc
Q 040043           77 HVNVVKLMLNQSWLMEF-EEDRDESTPLHVAI-SRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLN  154 (539)
Q Consensus        77 ~~eiv~~Ll~~~~~~~~-~~~~~g~t~Lh~A~-~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~  154 (539)
                      +.++|++|+++++++.. ..+..|.||||+|+ ..|+.+++++|++.+.        .|.||||+|+..|+.+++++|++
T Consensus       175 ~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~  246 (376)
T 2aja_A          175 HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIAR  246 (376)
T ss_dssp             CHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHH
T ss_pred             CHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHh
Confidence            99999999999988652 25677999999999 9999999999998542        27899999999999999999999


Q ss_pred             CCCccccccccCCCCHHHHHHHcCCH---------------------------HHHHHHHHhCCCc----cccccCCCCc
Q 040043          155 SKPDMALQYNNNGYTPLHQAAINGHV---------------------------KILEAFIASSPTS----FNCLTTDGDT  203 (539)
Q Consensus       155 ~~~~~~~~~d~~g~tpLh~Aa~~g~~---------------------------~~v~~Ll~~~~~~----~~~~d~~g~t  203 (539)
                      +|++.... +    ++++.|+.+|+.                           +.++.|++.....    .......+.+
T Consensus       247 ~ga~~~~~-~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~  321 (376)
T 2aja_A          247 HVNRLKEM-H----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANE  321 (376)
T ss_dssp             HHHHHHHH-H----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCH
T ss_pred             cCcccccc-c----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccH
Confidence            98876543 2    234444444443                           3444444321100    1122346778


Q ss_pred             HHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHh
Q 040043          204 VFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYII  257 (539)
Q Consensus       204 ~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll  257 (539)
                      +||+|+..|+.+++++|++.      ...+|..|+|++.+|-..|..++.+.-+
T Consensus       322 ~L~~A~~~g~~e~v~lLl~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~  369 (376)
T 2aja_A          322 LLRLALRLGNQGACALLLSI------PSVLALTKANNYYINETGGRLDLRAVAL  369 (376)
T ss_dssp             HHHHHHHHTCTTHHHHHTTS------HHHHHSCC--------------------
T ss_pred             HHHHHHHcCcHHHHHHHHcC------hHHHHHHHHhccccccccccccHHHHHH
Confidence            99999999999999999986      2457889999999999999988876544

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=4.6e-28  Score=229.44  Aligned_cols=202  Identities=18%  Similarity=0.149  Sum_probs=167.3

Q ss_pred             HHHHHhCCccccc--ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCc
Q 040043           81 VKLMLNQSWLMEF--EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPD  158 (539)
Q Consensus        81 v~~Ll~~~~~~~~--~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  158 (539)
                      ++.|++++..+..  ..+.+|.||||.|+..|+.++++.|++.+.++ +..|..|+||||+|+..|+.+++++|++.|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            3567777766542  34556778999999999999999999999877 78899999999999999999999999999999


Q ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccc-CCCCcHHHHH--HHhCChhHHHHHHhhcccccccccccC
Q 040043          159 MALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLT-TDGDTVFHLA--LRFGKYNAFIFLAESFDFTGLLHQQDQ  235 (539)
Q Consensus       159 ~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A--v~~~~~~~v~~Ll~~~~~~~~~~~~d~  235 (539)
                      ++.. |..|+||||+|+..|+.++++.|++.+.+ ++..+ ..|+||||+|  +..++.+++++|++.   +..++.+|.
T Consensus        80 ~n~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~---ga~~~~~~~  154 (229)
T 2vge_A           80 VNSP-DSHGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADV---EQSMGLMNS  154 (229)
T ss_dssp             TTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH---HHHTTTSGG
T ss_pred             CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHHc---CCCcccccC
Confidence            9887 99999999999999999999999988765 56665 6999999999  999999999999998   556888999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhccccC--ccccccCCCCHHHHHHHcCCchhhHHHhh
Q 040043          236 FGNTVLHLAILRNNYQLAEYIIKKTKVD--KNCRNYTNQTALDVLKESGTKEAFSSELQ  292 (539)
Q Consensus       236 ~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~--~~~~n~~g~t~l~~a~~~~~~~~~~~~l~  292 (539)
                      .|.||+|.++..+..   ++|+ ..|++  ++.+|..|+|||++|+..|+.++++..+-
T Consensus       155 ~~~~~l~~~~~~~~~---~~ll-~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l  209 (229)
T 2vge_A          155 GAVYALWDYSAEFGD---ELSF-REGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF  209 (229)
T ss_dssp             GEEEESSCBCCSSTT---BCCB-CTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred             CchHHHHHHhhcccc---ccCc-cccccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence            999999976655433   4555 44777  77899999999999999999988876443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.5e-25  Score=197.14  Aligned_cols=151  Identities=25%  Similarity=0.351  Sum_probs=71.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCH
Q 040043          101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHV  180 (539)
Q Consensus       101 t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~  180 (539)
                      ||||.|+..|+.++++.|++..+...+..|..|.||||+ +..|+.+++++|++.|++++.. |..|.||||+|+..|+.
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~   81 (156)
T 1bd8_A            4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCH
T ss_pred             hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCcH
Confidence            344444444444444444444222223344444444444 4444444444444444444433 44444444444444444


Q ss_pred             HHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043          181 KILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK  258 (539)
Q Consensus       181 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  258 (539)
                      ++++.|++.+ .+++..|..|+||||+|+..|+.+++++|++.    ..++.+|.+|+||||+|+..++.+++++|++
T Consensus        82 ~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           82 DTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE----SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT----SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHHHcC-CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc----cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            4444444443 22344444455555555555555555555443    2344455555555555555555555555553

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=2.3e-25  Score=199.38  Aligned_cols=157  Identities=25%  Similarity=0.368  Sum_probs=91.0

Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHH
Q 040043           62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYAS  141 (539)
Q Consensus        62 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~  141 (539)
                      |.+|.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHH
Confidence            4556666666666666666666666444333344555666666666666666666666665554 555566666666666


Q ss_pred             HcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHH
Q 040043          142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA  221 (539)
Q Consensus       142 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll  221 (539)
                      ..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|++.+. +++.+|.+|+||||+|+. ++.+++++|+
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~a~~-~~~~i~~~L~  160 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVA-DLWKFTPLHEAAAKGKYEICKLLLQHGA-DPTKKNRDGNTPLDLVKD-GDTDIQDLLR  160 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred             HcCcHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence            666666666666666665554 5556666666666666666665555542 244455555555555443 4455555554


Q ss_pred             h
Q 040043          222 E  222 (539)
Q Consensus       222 ~  222 (539)
                      +
T Consensus       161 ~  161 (165)
T 3twr_A          161 G  161 (165)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=6.6e-26  Score=216.12  Aligned_cols=157  Identities=18%  Similarity=0.203  Sum_probs=93.7

Q ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHH
Q 040043           29 EKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAIS  108 (539)
Q Consensus        29 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  108 (539)
                      ..|.||||.|++.|+.++++.|++.|.++.  .+..|.||||.|+..|+.+++++|++.+.+++ ..|..|.||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence            467888888888888888888888887763  24667888888888888888888888877665 567778888888888


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCC-CHHHHH--HHcCCHHHHHH
Q 040043          109 RGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGY-TPLHQA--AINGHVKILEA  185 (539)
Q Consensus       109 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A--a~~g~~~~v~~  185 (539)
                      .|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|+++|++++.. +..|. ||||+|  +..|+.++++.
T Consensus        80 ~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM-TYSDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             HTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccee-cCCCCcchHHHHHHhhhccHHHHHH
Confidence            88888888888877765 667777888888888888888888888887777765 44444 777777  66677777777


Q ss_pred             HHHhC
Q 040043          186 FIASS  190 (539)
Q Consensus       186 Ll~~~  190 (539)
                      |++.+
T Consensus       158 Ll~~~  162 (239)
T 1ycs_B          158 LYGVQ  162 (239)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            77654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=1.1e-25  Score=214.71  Aligned_cols=182  Identities=18%  Similarity=0.155  Sum_probs=114.2

Q ss_pred             cCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHH
Q 040043           63 QERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASR  142 (539)
Q Consensus        63 ~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~  142 (539)
                      ..|.||||.|+..|+.++++.|+++|.+++  .+..|.||||.|+..|+.++++.|++.++++ +..|..|+||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            468888888888888888888888888776  3467788888888888888888888887765 7778888888888888


Q ss_pred             cCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCC-cHHHHH--HHhCChhHHHH
Q 040043          143 IGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGD-TVFHLA--LRFGKYNAFIF  219 (539)
Q Consensus       143 ~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--v~~~~~~~v~~  219 (539)
                      .|+.+++++|+++|++++.. |..|+||||+|+..|+.++++.|++++.+ ++..+..|. ||||+|  +..|+.+++++
T Consensus        80 ~g~~~~v~~Ll~~ga~~~~~-d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             HTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHH
Confidence            88888888888888888776 88888888888888888888888887654 566666555 888888  67788888888


Q ss_pred             HHhhccccccc------ccccCCCCcHHHHHHHcCC
Q 040043          220 LAESFDFTGLL------HQQDQFGNTVLHLAILRNN  249 (539)
Q Consensus       220 Ll~~~~~~~~~------~~~d~~G~T~Lh~A~~~~~  249 (539)
                      |++........      ...|..|.++++++...|.
T Consensus       158 Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          158 LYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            88764332221      2236667777777776665

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=1.4e-23  Score=186.03  Aligned_cols=146  Identities=18%  Similarity=0.181  Sum_probs=112.2

Q ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCc-H
Q 040043           24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDEST-P  102 (539)
Q Consensus        24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t-~  102 (539)
                      ....+..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+ .|+.+++++|++++.+++ ..+..|.| |
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~-~~d~~g~ttp   81 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-CADPATLTRP   81 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-CCCTTTCCCH
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC-CcCCCCCcHH
Confidence            3456788999999999999999999999998877 667889999999985 899999999999988877 57888888 9


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHH
Q 040043          103 LHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQA  174 (539)
Q Consensus       103 Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  174 (539)
                      ||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||.+.+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~~~~~  151 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS-NHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCcc-CcCcCcccccC
Confidence            99999999999999999998877 778889999999999999999999999999998876 88888887643

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.89  E-value=1.1e-23  Score=182.13  Aligned_cols=131  Identities=20%  Similarity=0.253  Sum_probs=91.1

Q ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCC-CCcH
Q 040043           24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRD-ESTP  102 (539)
Q Consensus        24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~-g~t~  102 (539)
                      ++..|..|.||||.|+..|+.+++++|++.+.++ +..|..|.||||+|+. |+.+++++|++++.+++ ..+.. |.||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~~g~t~   81 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-CADPATLTRP   81 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-CCBTTTTBCH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-CcCCCCCCCH
Confidence            5566777777777777777777777777777665 4566777777777777 77777777777776665 34555 6677


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCc
Q 040043          103 LHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPD  158 (539)
Q Consensus       103 Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  158 (539)
                      ||+|+..|+.++++.|++.++++ +..|..|.||||+|+..++.+++++|+++|++
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            77777777777777777666655 55666666777777776677777766666553

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=2.7e-23  Score=184.24  Aligned_cols=145  Identities=20%  Similarity=0.211  Sum_probs=102.6

Q ss_pred             cccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCc-HH
Q 040043          127 EQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDT-VF  205 (539)
Q Consensus       127 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~L  205 (539)
                      ...+..|.||||+|+..|+.+++++|++.|++++.. |..|.||||+|+ .|+.++++.|++.+ .+++..|..|+| ||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~g-~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPATLTRPV   82 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCCCTTTCCCHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHcC-CCCCCcCCCCCcHHH
Confidence            345667788888888888888888888888877765 778888888874 78888888888765 446777888888 88


Q ss_pred             HHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHH
Q 040043          206 HLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVL  278 (539)
Q Consensus       206 h~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a  278 (539)
                      |+|+..|+.+++++|++.   +..++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|.||.+-+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred             HHHHHCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence            888888888888888887   55688889999999999999999999999994 4999999999999987743

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=2.4e-23  Score=190.06  Aligned_cols=154  Identities=12%  Similarity=0.067  Sum_probs=108.2

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCH----HHHHHHHhCCcccccccCCCCCcHHHHH
Q 040043           31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHV----NVVKLMLNQSWLMEFEEDRDESTPLHVA  106 (539)
Q Consensus        31 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~----eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A  106 (539)
                      +.++||.|++.|+.+.++.+++.+.+.  ..+..|+||||+|+.+|+.    +++++|+++|++++ ..+..|.||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-SRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-CCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-CCCCCCCcHHHHH
Confidence            457888888888888888888776433  2236788888888888864    47888888888777 5677788888888


Q ss_pred             HHcCC------HHHHHHHHhcCCccccccCCCCC-hHHhHHHHcC-----CHHHHHHHHc-CCCccccccccCCCCHHHH
Q 040043          107 ISRGK------IDIVKEILKVRPSFCEQADKNRC-LPLHYASRIG-----NVEITKLLLN-SKPDMALQYNNNGYTPLHQ  173 (539)
Q Consensus       107 ~~~g~------~~~v~~LL~~~~~~~~~~d~~g~-tpLh~A~~~g-----~~~~v~~Ll~-~~~~~~~~~d~~g~tpLh~  173 (539)
                      +..|+      .++++.|++.+.++ +.+|..|+ ||||+|+..+     +.+++++|++ +|++++.. |..|.||||+
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~-d~~G~TpL~~  160 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK-DKWGLTALEF  160 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCC-CTTSCCHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCccc-CCCCCCHHHH
Confidence            87776      45677777766665 66666676 7777777633     2456666666 66666665 6667777777


Q ss_pred             HHHcCCHHHHHHHHHh
Q 040043          174 AAINGHVKILEAFIAS  189 (539)
Q Consensus       174 Aa~~g~~~~v~~Ll~~  189 (539)
                      |++.|+.++++.|.+.
T Consensus       161 A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          161 VKRCQKPIALKMMEDY  176 (186)
T ss_dssp             HHTTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHH
Confidence            7777766666666543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=1.5e-22  Score=175.02  Aligned_cols=128  Identities=21%  Similarity=0.279  Sum_probs=86.3

Q ss_pred             cccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCC-CChHH
Q 040043           59 TLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKN-RCLPL  137 (539)
Q Consensus        59 ~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~-g~tpL  137 (539)
                      +..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+. |+.+++++|++.+.++ +..|.. |+|||
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L   82 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPV   82 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHH
Confidence            4456667777777777777777777777766655 456666777777777 7777777777666665 555666 67777


Q ss_pred             hHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhC
Q 040043          138 HYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASS  190 (539)
Q Consensus       138 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~  190 (539)
                      |+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|++++
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGARLDVC-DAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCCCCCC-SSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            7777777777777777766666654 666667777777666666666666554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.88  E-value=5.1e-22  Score=168.52  Aligned_cols=126  Identities=37%  Similarity=0.572  Sum_probs=93.4

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHc
Q 040043           30 KLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISR  109 (539)
Q Consensus        30 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  109 (539)
                      +|+||||.|++.|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCcHHHHHHHc
Confidence            4778888888888888888888877766 4567777788888888888888888777776665 4566777777777777


Q ss_pred             CCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCc
Q 040043          110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPD  158 (539)
Q Consensus       110 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  158 (539)
                      |+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            7777777777776665 56667777777777777777777777776653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=1.7e-23  Score=190.84  Aligned_cols=166  Identities=18%  Similarity=0.240  Sum_probs=120.5

Q ss_pred             eecccCcHHHHHHHHHhCCh----------hhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHH
Q 040043            3 AATGFGHIELVTEIIKLCPQ----------LVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLA   72 (539)
Q Consensus         3 ~Aa~~g~~e~v~~Ll~~~~~----------~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A   72 (539)
                      .|++.|..+.++++++.+..          .....+..|.||||.|++.|+.++++.|++ +.++ +..|..|.||||+|
T Consensus         6 ~aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A   83 (183)
T 3deo_A            6 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFV   83 (183)
T ss_dssp             EEEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHH
T ss_pred             HHHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHH
Confidence            56777777777777754211          112245678888888888888888888888 6655 56778888888888


Q ss_pred             HHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHH
Q 040043           73 CRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL  152 (539)
Q Consensus        73 ~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~L  152 (539)
                      +..|+.+++++|++++.+++...+..|.||||+|+..|+.++++.|++.+.++ +..|..|.||||+|+..++       
T Consensus        84 ~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~-------  155 (183)
T 3deo_A           84 AGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK-------  155 (183)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHH-------
T ss_pred             HHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhcc-------
Confidence            88888888888888887776433477888888888888888888888877766 6677778888888876321       


Q ss_pred             HcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHh
Q 040043          153 LNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS  189 (539)
Q Consensus       153 l~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~  189 (539)
                                 ...+.+||++|+..|+.++++.|.++
T Consensus       156 -----------~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          156 -----------TTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             -----------TCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             -----------CcccccHHHHHHHcCHHHHHHHHHHh
Confidence                       23456777777777777777776543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.87  E-value=5.6e-23  Score=187.65  Aligned_cols=152  Identities=12%  Similarity=0.039  Sum_probs=70.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCH----HHHHHHHhcCCccccccCCCCChHHhHHH
Q 040043           66 QSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKI----DIVKEILKVRPSFCEQADKNRCLPLHYAS  141 (539)
Q Consensus        66 ~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~LL~~~~~~~~~~d~~g~tpLh~A~  141 (539)
                      .++|+.|++.|+.+.++.+++.+....  .+..|.||||+|+..|+.    +++++|++.++++ +.+|..|+||||+|+
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~~~~--~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPLF   83 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSSSCH--HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCcccc--cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHH
Confidence            345555555555555555555442211  123455555555555543    2555555555544 444555555555555


Q ss_pred             HcCC------HHHHHHHHcCCCccccccccCCC-CHHHHHHHcCC-----HHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 040043          142 RIGN------VEITKLLLNSKPDMALQYNNNGY-TPLHQAAINGH-----VKILEAFIASSPTSFNCLTTDGDTVFHLAL  209 (539)
Q Consensus       142 ~~g~------~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~Aa~~g~-----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av  209 (539)
                      ..++      .+++++|+++|++++.. |..|. ||||+|+..+.     .++++.|++....+++..|..|+||||+|+
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~  162 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK  162 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence            5544      34455555555555544 55555 55555554221     234444443122223344444444444444


Q ss_pred             HhCChhHHHHHH
Q 040043          210 RFGKYNAFIFLA  221 (539)
Q Consensus       210 ~~~~~~~v~~Ll  221 (539)
                      +.++.+++++|.
T Consensus       163 ~~~~~~~v~~L~  174 (186)
T 3t8k_A          163 RCQKPIALKMME  174 (186)
T ss_dssp             TTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHH
Confidence            444444444333

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=4.7e-22  Score=171.83  Aligned_cols=123  Identities=24%  Similarity=0.321  Sum_probs=65.9

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHc
Q 040043           30 KLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISR  109 (539)
Q Consensus        30 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  109 (539)
                      .|.||||+||..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHc
Confidence            4455566666666666666555555544 3445555555555555555555555555555444 3444555555555555


Q ss_pred             CCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcC
Q 040043          110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNS  155 (539)
Q Consensus       110 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  155 (539)
                      |+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++.
T Consensus        91 ~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           91 GHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             CCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            5555555555554443 44455555555555555555555555543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=5.8e-23  Score=196.30  Aligned_cols=139  Identities=17%  Similarity=0.237  Sum_probs=73.4

Q ss_pred             cCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccC-CCCChHHhHHH
Q 040043           63 QERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD-KNRCLPLHYAS  141 (539)
Q Consensus        63 ~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d-~~g~tpLh~A~  141 (539)
                      .+|.||||.|+..|+.++++.|++ +.+++ ..|..|.||||+|+..|+.++++.|++.++++ +..| ..|+||||+|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHH
Confidence            344555555555555555555555 43333 34445555555555555555555555555544 2233 44555555555


Q ss_pred             HcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHH
Q 040043          142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA  221 (539)
Q Consensus       142 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll  221 (539)
                      ..|+.+++++|+++|++++.. |..|.||||+|+..++.                  ..+.||||+|+..|+.+++++|.
T Consensus       120 ~~g~~~~v~~Ll~~ga~~~~~-d~~g~t~l~~A~~~~~~------------------~~~~~~l~~a~~~g~~~iv~~L~  180 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADIEVE-DERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLE  180 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHHTT------------------CCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHHHhc------------------cCCCCHHHHHHHcChHHHHHHHH
Confidence            555555555555555555543 55555555555543221                  23456666666666666666665


Q ss_pred             hh
Q 040043          222 ES  223 (539)
Q Consensus       222 ~~  223 (539)
                      +.
T Consensus       181 ~~  182 (244)
T 3ui2_A          181 GQ  182 (244)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.86  E-value=1.7e-21  Score=168.40  Aligned_cols=126  Identities=26%  Similarity=0.375  Sum_probs=93.0

Q ss_pred             cccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHH
Q 040043           61 LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYA  140 (539)
Q Consensus        61 ~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A  140 (539)
                      ....+.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.++++.|++.+.++ +..|..|.||||+|
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A   87 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLA   87 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence            34556778888888888888888887777665 45677777777777777777777777776665 66677777777777


Q ss_pred             HHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHh
Q 040043          141 SRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS  189 (539)
Q Consensus       141 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~  189 (539)
                      +..|+.+++++|+++|++++.. |.+|.||||+|+..|+.++++.|++.
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~~~~-~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHcCCCCcCc-CCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            7777777777777777777665 77777777777777777777777654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=4e-23  Score=197.44  Aligned_cols=167  Identities=16%  Similarity=0.165  Sum_probs=107.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcC
Q 040043           65 RQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG  144 (539)
Q Consensus        65 g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g  144 (539)
                      +.+++.+++..|+.+.+..+...+.+    .+..|.||||.|+..|+.++++.|++ +.++ +..|..|+||||+|+..|
T Consensus        15 ~~~~~l~~~~~g~~~~~~~~~~~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g   88 (244)
T 3ui2_A           15 GAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLG   88 (244)
T ss_dssp             TEEEEEEEESSCCCCEEEEGGGSCHH----HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHT
T ss_pred             CccHHHHHHHcCCCcccccccccccc----cccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCC
Confidence            34444444555554444333333222    22356677777777777777777777 4444 666777777777777777


Q ss_pred             CHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhc
Q 040043          145 NVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESF  224 (539)
Q Consensus       145 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~  224 (539)
                      +.+++++|+++|++++...+..|.||||+|+..|+.++++.|++.+. +++..|..|+||||+|+..++.          
T Consensus        89 ~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~d~~g~t~l~~A~~~~~~----------  157 (244)
T 3ui2_A           89 SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA-DIEVEDERGLTALELAREILKT----------  157 (244)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHHHTT----------
T ss_pred             CHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHHHhc----------
Confidence            77777777777777766533667777777777777777777776653 3666777777777777754332          


Q ss_pred             ccccccccccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043          225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK  258 (539)
Q Consensus       225 ~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  258 (539)
                                ..+.||||+|+..|+.+++++|++
T Consensus       158 ----------~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          158 ----------TPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             ----------CCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------cCCCCHHHHHHHcChHHHHHHHHH
Confidence                      235677777777777777777764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.86  E-value=4.2e-21  Score=162.84  Aligned_cols=125  Identities=37%  Similarity=0.644  Sum_probs=90.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHc
Q 040043           64 ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRI  143 (539)
Q Consensus        64 ~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~  143 (539)
                      +|+||||.|+..|+.+++++|++++.+++ ..+..|.||||.|+..|+.+++++|++.+.++ +..|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc
Confidence            46777777777777777777777776655 45667777777777777777777777776665 56667777777777777


Q ss_pred             CCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCC
Q 040043          144 GNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSP  191 (539)
Q Consensus       144 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~  191 (539)
                      |+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|++++.
T Consensus        79 ~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             ChHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            7777777777777776654 6777777777777777777777776653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=5.6e-23  Score=187.33  Aligned_cols=139  Identities=17%  Similarity=0.231  Sum_probs=92.0

Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccC-CCCChHHhHH
Q 040043           62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD-KNRCLPLHYA  140 (539)
Q Consensus        62 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d-~~g~tpLh~A  140 (539)
                      +.+|.||||.|+..|+.++++.|++ +.+++ ..|..|.||||+|+..|+.++++.|++.++++ +..| ..|+||||+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence            4566777777777777777777777 55554 45666777777777777777777777776665 3344 6677777777


Q ss_pred             HHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHH
Q 040043          141 SRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL  220 (539)
Q Consensus       141 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~L  220 (539)
                      +..|+.+++++|+++|++++.. |.+|.||||+|++.++.                  ..+.++|++|+..|+.+++++|
T Consensus       118 ~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L  178 (183)
T 3deo_A          118 AGYVRPEVVEALVELGADIEVE-DERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVL  178 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHcCCCCcCC-CCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHH
Confidence            7777777777777777766654 66777777777653321                  2345666666666666666666


Q ss_pred             Hh
Q 040043          221 AE  222 (539)
Q Consensus       221 l~  222 (539)
                      .+
T Consensus       179 ~~  180 (183)
T 3deo_A          179 EG  180 (183)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=9.6e-22  Score=170.04  Aligned_cols=128  Identities=25%  Similarity=0.326  Sum_probs=91.8

Q ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHH
Q 040043           26 AVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHV  105 (539)
Q Consensus        26 ~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~  105 (539)
                      .+|..|.||||.|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-TTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-CcCCCCCCHHHH
Confidence            46777888888888888888888888877766 5567777778888877777777777777777665 456667777777


Q ss_pred             HHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCC
Q 040043          106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSK  156 (539)
Q Consensus       106 A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~  156 (539)
                      |+..|+.++++.|++.+.++ +..|..|.||||+|+..+..+++++|.+.+
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            77777777777777776665 666777777777777776666666665544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=2.4e-21  Score=167.55  Aligned_cols=125  Identities=23%  Similarity=0.304  Sum_probs=80.9

Q ss_pred             ccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhH
Q 040043           60 LLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHY  139 (539)
Q Consensus        60 ~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~  139 (539)
                      .+|..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHH
Confidence            356666777777777777777777776666555 45566666666666666666666666666554 5556666666666


Q ss_pred             HHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHH
Q 040043          140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI  187 (539)
Q Consensus       140 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll  187 (539)
                      |+..|+.+++++|+++|++++.. |..|.||||+|+..+..++++.+.
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~tpl~~A~~~~~~~~l~~l~  129 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGASRNAV-NIFGLRPVDYTDDESMKSLLLLPE  129 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCC-CTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHhhccHHHHHhhcc
Confidence            66666666666666666666554 666666666666666666655444

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=4.2e-21  Score=180.46  Aligned_cols=135  Identities=24%  Similarity=0.365  Sum_probs=97.1

Q ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhC-CcccccccCCCCCcH
Q 040043           24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ-SWLMEFEEDRDESTP  102 (539)
Q Consensus        24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~g~t~  102 (539)
                      +...+..|.||||+||..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++. +.+++ ..|..|.||
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-~~d~~g~tp  143 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN-QQNKLGDTA  143 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC-CCCTTSCCH
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc-ccCCCCCCH
Confidence            4556677888888888888888888888887776 55677888888888888888888888887 66655 567778888


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcccc
Q 040043          103 LHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMAL  161 (539)
Q Consensus       103 Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~  161 (539)
                      ||+|+..|+.++++.|++.+.++ +..|..|.||||+|+..++.++++.|++.++....
T Consensus       144 L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~  201 (222)
T 3ehr_A          144 LHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL  201 (222)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-----------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence            88888888888888888877766 66777788888888887778888887777766554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.83  E-value=7.4e-21  Score=187.31  Aligned_cols=144  Identities=17%  Similarity=0.134  Sum_probs=120.6

Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHhCCcccccc-----cCCCCCcHHHHHHHc---CCHHHHHHHHhcCCccccccCCCC
Q 040043           62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFE-----EDRDESTPLHVAISR---GKIDIVKEILKVRPSFCEQADKNR  133 (539)
Q Consensus        62 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~-----~~~~g~t~Lh~A~~~---g~~~~v~~LL~~~~~~~~~~d~~g  133 (539)
                      ...+.++|+.|+..|+.+.++.|++.+.+++..     .+..|.||||+|+..   |+.+++++|++.++++ +..|..|
T Consensus       148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G  226 (301)
T 2b0o_E          148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADG  226 (301)
T ss_dssp             CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTC
T ss_pred             cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCC
Confidence            445668899999999999999999998887632     578899999999987   8999999999998887 7789999


Q ss_pred             ChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCC
Q 040043          134 CLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK  213 (539)
Q Consensus       134 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~  213 (539)
                      +||||+|+..|+.+++++|+++|++++.. |.+|.||||+|+..|+.++++.|++.+++       .|.||||+|+.+|+
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCCSCC-CTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCC
Confidence            99999999999999999999999999876 99999999999999999999999987754       58899999999886


Q ss_pred             h
Q 040043          214 Y  214 (539)
Q Consensus       214 ~  214 (539)
                      .
T Consensus       299 ~  299 (301)
T 2b0o_E          299 S  299 (301)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=1.4e-20  Score=159.41  Aligned_cols=109  Identities=14%  Similarity=0.156  Sum_probs=53.1

Q ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHH
Q 040043           29 EKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAIS  108 (539)
Q Consensus        29 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  108 (539)
                      ..|+||||.|+..|+.++++.|++.++++ +..|..|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSAVY   82 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHH
Confidence            34555555555555555555555555444 3344455555555555555555555555544443 334444444444444


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCCChHHhHH
Q 040043          109 RGKIDIVKEILKVRPSFCEQADKNRCLPLHYA  140 (539)
Q Consensus       109 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A  140 (539)
                      .|+.++++.|++.++++ +..|..|.||||+|
T Consensus        83 ~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADK-TVKGPDGLTAFEAT  113 (123)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHC
T ss_pred             cCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHh
Confidence            44444444444444433 33444444444444

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.82  E-value=7.4e-21  Score=178.81  Aligned_cols=139  Identities=19%  Similarity=0.176  Sum_probs=102.7

Q ss_pred             ccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHH
Q 040043          128 QADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHL  207 (539)
Q Consensus       128 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  207 (539)
                      ..+..|.||||+|+..|+.++++.|++.|++++.. |..|.||||+|+..|+.++++.|++..+..++..|..|+||||+
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~  146 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA  146 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence            34667888888888888888888888888887765 88888888888888888888888887566678888888888888


Q ss_pred             HHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCC
Q 040043          208 ALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTN  271 (539)
Q Consensus       208 Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g  271 (539)
                      |+..|+.+++++|++.   +..++.+|.+|+||||+|+..++.++++.|++ .+++.+..|.+|
T Consensus       147 A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~-~~~~~~~~~~~~  206 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAK---GARTDLRNIEKKLAFDMATNAACASLLKKKQG-TDAVRTLSNAED  206 (222)
T ss_dssp             HHHHTCHHHHHHHHHH---TCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HHHcCCHHHHHHHHHc---CCCCccccCCCCCHHHHhcchhHHHHHHHHhc-cchhhhccchhh
Confidence            8888888888888887   55678888888888888888888888888874 466666666544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=2.4e-20  Score=158.00  Aligned_cols=114  Identities=23%  Similarity=0.324  Sum_probs=75.1

Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHH
Q 040043           62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYAS  141 (539)
Q Consensus        62 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~  141 (539)
                      +..|.||||.|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence            3456677777777777777777777666654 45666777777777777777777777666654 556666777777777


Q ss_pred             HcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcC
Q 040043          142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAING  178 (539)
Q Consensus       142 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g  178 (539)
                      ..|+.+++++|+++|++++.. |.+|.||||+|...+
T Consensus        82 ~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADKTVK-GPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCCCHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHhCCHH
Confidence            777777777777776666654 666777777664333

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=2.6e-20  Score=183.35  Aligned_cols=144  Identities=17%  Similarity=0.185  Sum_probs=122.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCccccc-----cCCCCChHHhHHHHc---CCHHHHHHHHcCCCccccccccCC
Q 040043           96 DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ-----ADKNRCLPLHYASRI---GNVEITKLLLNSKPDMALQYNNNG  167 (539)
Q Consensus        96 ~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~-----~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g  167 (539)
                      .....++|+.|+..|+.+.++.|++.++++...     .|..|+||||+|+..   |+.+++++|+++|++++.. |.+|
T Consensus       148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~-d~~G  226 (301)
T 2b0o_E          148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADG  226 (301)
T ss_dssp             CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC-CTTC
T ss_pred             cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC-CCCC
Confidence            344567999999999999999999999887332     688999999999997   8999999999999999886 9999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHc
Q 040043          168 YTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILR  247 (539)
Q Consensus       168 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~  247 (539)
                      +||||+|+..|+.++++.|++.+. +++..|.+|+||||+|+..++.+++++|++....         .|+||||+|+..
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------~g~tpLh~A~~~  296 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLKGRA-LVGTVNEAGETALDIARKKHHKECEELLEQAQAG---------TFAFPLHVDYSW  296 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTC-CCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---------TTSSCCC-----
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---------CCCChhHHHHhc
Confidence            999999999999999999999864 4789999999999999999999999999997543         489999999998


Q ss_pred             CCH
Q 040043          248 NNY  250 (539)
Q Consensus       248 ~~~  250 (539)
                      |+.
T Consensus       297 g~~  299 (301)
T 2b0o_E          297 VIS  299 (301)
T ss_dssp             ---
T ss_pred             CCc
Confidence            863

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.79  E-value=1.2e-18  Score=169.37  Aligned_cols=120  Identities=16%  Similarity=0.154  Sum_probs=58.1

Q ss_pred             hHHhHHHHcCCHHHHHHHHcCCCccccc-----cccCCCCHHHHHHHc---CCHHHHHHHHHhCCCccccccCCCCcHHH
Q 040043          135 LPLHYASRIGNVEITKLLLNSKPDMALQ-----YNNNGYTPLHQAAIN---GHVKILEAFIASSPTSFNCLTTDGDTVFH  206 (539)
Q Consensus       135 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~-----~d~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh  206 (539)
                      ++|+.|+..|+.+.++.+++.|.+++..     .|..|.||||+|+..   |+.++++.|++.+.+ ++..|..|+||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHH
Confidence            4444455555555444444444443211     134445555555554   445555555544322 4444455555555


Q ss_pred             HHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043          207 LALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK  258 (539)
Q Consensus       207 ~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  258 (539)
                      +|+..|+.+++++|++.   +.+++.+|.+|+||||+|+..++.+++++|++
T Consensus       211 ~A~~~g~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  259 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRG---KASIEIANESGETPLDIAKRLKHEHCEELLTQ  259 (278)
T ss_dssp             HHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHc---CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            55555555555555443   33445555555555555555555555555553

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.78  E-value=2.1e-18  Score=167.72  Aligned_cols=126  Identities=21%  Similarity=0.224  Sum_probs=89.8

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCc-----cccccCCCCcHHHHHHHh---CChhHHHHHHhhcccccccccccCCCCc
Q 040043          168 YTPLHQAAINGHVKILEAFIASSPTS-----FNCLTTDGDTVFHLALRF---GKYNAFIFLAESFDFTGLLHQQDQFGNT  239 (539)
Q Consensus       168 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~t~Lh~Av~~---~~~~~v~~Ll~~~~~~~~~~~~d~~G~T  239 (539)
                      .++|+.|+..|+.+.+..++..+.+.     ++..|..|+||||+|+..   ++.+++++|++.   +..+|.+|..|+|
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~---ga~in~~d~~g~T  207 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN---SGNLDKQTGKGST  207 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH---CSCTTCCCTTCCC
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC---CCCccccCCCCCC
Confidence            45777777777777777777766553     333466777777777777   677777777776   4557777777777


Q ss_pred             HHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCC
Q 040043          240 VLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEP  297 (539)
Q Consensus       240 ~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~  297 (539)
                      |||+|+..|+.+++++|++ .|++++.+|..|+||||+|...|+.++++.+++.++..
T Consensus       208 pLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          208 ALHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            7777777777777777774 47777777777777777777777777777777766553

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.75  E-value=4.8e-18  Score=136.11  Aligned_cols=91  Identities=35%  Similarity=0.565  Sum_probs=58.6

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcC
Q 040043           31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRG  110 (539)
Q Consensus        31 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  110 (539)
                      |+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcC
Confidence            667777777777777777777766665 4456666666666666666666666666666555 45556666666666666


Q ss_pred             CHHHHHHHHhcCC
Q 040043          111 KIDIVKEILKVRP  123 (539)
Q Consensus       111 ~~~~v~~LL~~~~  123 (539)
                      +.+++++|++.++
T Consensus        80 ~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           80 HLEVVKLLLEAGA   92 (93)
T ss_dssp             CHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCC
Confidence            6666666665543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.75  E-value=3.7e-18  Score=171.99  Aligned_cols=147  Identities=18%  Similarity=0.174  Sum_probs=113.2

Q ss_pred             CCCCChHHhHHHHc-CCHHHHHHHHcCCCccccccc--cCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHH
Q 040043          130 DKNRCLPLHYASRI-GNVEITKLLLNSKPDMALQYN--NNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFH  206 (539)
Q Consensus       130 d~~g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh  206 (539)
                      +..+.|+||.|+.. |+.++++.|++.|++++.. +  ..|.||||+|+..|+.++++.|++.+ .+++..|..|+||||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~d~~G~TpLh  273 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNG-ANVNQADSAGRGPLH  273 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHH
Confidence            34567899999999 9999999999999999876 6  88999999999999999999999886 458899999999999


Q ss_pred             HHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhc--cccCccccccCCCCHHHHHHHc
Q 040043          207 LALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK--TKVDKNCRNYTNQTALDVLKES  281 (539)
Q Consensus       207 ~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~--~~~~~~~~n~~g~t~l~~a~~~  281 (539)
                      +|+..|+.+++++|++.   +..++.+|.+|+||||+|+..++.+++++|++.  ...+....+..+.|+++++...
T Consensus       274 ~A~~~g~~~~v~~LL~~---Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          274 HATILGHTGLACLFLKR---GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHcCcHHHHHHHHHC---cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            99999999999999987   667899999999999999999999999999854  2344456677888888887654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.75  E-value=3.7e-18  Score=172.01  Aligned_cols=148  Identities=16%  Similarity=0.193  Sum_probs=114.3

Q ss_pred             CCCcHHHHHHHc-CCHHHHHHHHhcCCccccccC--CCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHH
Q 040043           98 DESTPLHVAISR-GKIDIVKEILKVRPSFCEQAD--KNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQA  174 (539)
Q Consensus        98 ~g~t~Lh~A~~~-g~~~~v~~LL~~~~~~~~~~d--~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  174 (539)
                      .+.|+||.|+.. |+.++++.|++.+.++ +..+  ..|.||||+|+..|+.+++++|+++|++++.. |..|+||||+|
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~-d~~G~TpLh~A  275 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHA  275 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHH
Confidence            345799999999 9999999999999887 5666  88999999999999999999999999999876 99999999999


Q ss_pred             HHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcC
Q 040043          175 AINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRN  248 (539)
Q Consensus       175 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~  248 (539)
                      +..|+.++++.|++.+. +++..|.+|.||||+|+..++.+++++|++...........+..+.|+++++....
T Consensus       276 ~~~g~~~~v~~LL~~Ga-d~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          276 TILGHTGLACLFLKRGA-DLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HHcCcHHHHHHHHHCcC-CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            99999999999998864 47899999999999999999999999999876555555566778889998876543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.75  E-value=7.8e-18  Score=134.88  Aligned_cols=91  Identities=37%  Similarity=0.625  Sum_probs=51.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcC
Q 040043           65 RQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG  144 (539)
Q Consensus        65 g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g  144 (539)
                      |+||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcC
Confidence            5556666666666666666665555544 34555555555555555555555555555554 445555555555555555


Q ss_pred             CHHHHHHHHcCCC
Q 040043          145 NVEITKLLLNSKP  157 (539)
Q Consensus       145 ~~~~v~~Ll~~~~  157 (539)
                      +.+++++|+++|+
T Consensus        80 ~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           80 HLEVVKLLLEAGA   92 (93)
T ss_dssp             CHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCC
Confidence            5555555555554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.72  E-value=8.5e-18  Score=140.33  Aligned_cols=106  Identities=26%  Similarity=0.378  Sum_probs=49.0

Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHH
Q 040043           62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYAS  141 (539)
Q Consensus        62 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~  141 (539)
                      |.+|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAK   83 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence            3344444444444444444444444443333 23344444444444444444444444444443 344555555555555


Q ss_pred             HcCCHHHHHHHHcCCCccccccccCCCCH
Q 040043          142 RIGNVEITKLLLNSKPDMALQYNNNGYTP  170 (539)
Q Consensus       142 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp  170 (539)
                      ..|+.+++++|+++|++++.. +..|.+|
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~-~~~~~~~  111 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNAR-SWGSSHH  111 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHH-SCCCC--
T ss_pred             HCCCHHHHHHHHHcCCCCCcC-Ccccccc
Confidence            555555555555555555544 4444444

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.72  E-value=1.3e-17  Score=139.19  Aligned_cols=108  Identities=26%  Similarity=0.336  Sum_probs=78.3

Q ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHH
Q 040043           26 AVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHV  105 (539)
Q Consensus        26 ~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~  105 (539)
                      .+|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-CCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHH
Confidence            45677777777777777777777777777665 5567777777777777777777777777777665 456677777777


Q ss_pred             HHHcCCHHHHHHHHhcCCccccccCCCCChH
Q 040043          106 AISRGKIDIVKEILKVRPSFCEQADKNRCLP  136 (539)
Q Consensus       106 A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tp  136 (539)
                      |+..|+.++++.|++.++++ +..+..|.+|
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADV-NARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred             HHHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence            77777777777777777766 6666666665

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.61  E-value=1.3e-15  Score=126.09  Aligned_cols=93  Identities=25%  Similarity=0.385  Sum_probs=56.7

Q ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHH
Q 040043           24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPL  103 (539)
Q Consensus        24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~L  103 (539)
                      ....|.+|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++++.+++ ..|..|.|||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl   94 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKTAF   94 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccccCCCcHH
Confidence            4455666667777777777777777777666655 4456666666666666666666666666665554 4555666666


Q ss_pred             HHHHHcCCHHHHHHH
Q 040043          104 HVAISRGKIDIVKEI  118 (539)
Q Consensus       104 h~A~~~g~~~~v~~L  118 (539)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            666666666666544

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.58  E-value=4.9e-15  Score=122.48  Aligned_cols=92  Identities=25%  Similarity=0.410  Sum_probs=48.2

Q ss_pred             cccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHH
Q 040043          127 EQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFH  206 (539)
Q Consensus       127 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh  206 (539)
                      ...|.+|.||||+|+..|+.+++++|++.|++++.. |..|.||||+|+..|+.++++.|++.+. +++..|..|+||||
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~-d~~g~tpLh~A~~~~~~~~v~~Ll~~ga-~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGA-DVXAQDKFGKTAFD   95 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccccCCCcHHH
Confidence            334555556666666666666666666555555544 5555555555555555555555555432 24444555555555


Q ss_pred             HHHHhCChhHHHHH
Q 040043          207 LALRFGKYNAFIFL  220 (539)
Q Consensus       207 ~Av~~~~~~~v~~L  220 (539)
                      +|+..++.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            55555555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	539
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-29
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-25
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-23
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-21
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-19
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-17
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-11
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.004
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	4e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	4e-07
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	7e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-05

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 4e-29
 Identities = 70/357 (19%), Positives = 133/357 (37%), Gaps = 46/357 (12%)

Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
           TPLH A   G+  I   LL+       + N + ++   +A R GH  V K +L     + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 93  FEEDRDESTPLHVAISRGKIDIVKEILKVRPS---------------------------- 124
             + +D+ TPLH A   G  ++VK +L+   +                            
Sbjct: 61  -AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 125 ----FCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHV 180
                     K    PLH A++ G V + +LLL            NG TPLH A  + ++
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNL 178

Query: 181 KILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTV 240
            I++  +     S +    +G T  H+A +  +      L +        + +   G T 
Sbjct: 179 DIVK-LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA---NAESVQGVTP 234

Query: 241 LHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGS 300
           LHLA    + ++   ++ K   + N  N +  T L ++ + G        ++     + +
Sbjct: 235 LHLAAQEGHAEMVALLLSKQA-NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 293

Query: 301 PKH----LQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQNA--RNTIILVAVLI 351
            +     L         ++ +   ++++  + K +L    L  A  +    +V +L+
Sbjct: 294 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 350

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 2e-26
 Identities = 60/262 (22%), Positives = 113/262 (43%), Gaps = 9/262 (3%)

Query: 24  VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
            A + +K  TPLH A + G   ++ LLL+ +        +   +   +A    ++++VKL
Sbjct: 125 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKL 183

Query: 84  MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRI 143
           +L +          +  TPLH+A  + ++++ + +L+   S   +       PLH A++ 
Sbjct: 184 LLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE-SVQGVTPLHLAAQE 241

Query: 144 GNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDT 203
           G+ E+  LLL+ + +  L  N +G TPLH  A  GHV + +  I       +  T  G T
Sbjct: 242 GHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYT 299

Query: 204 VFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVD 263
             H+A  +G       +         ++ + + G + LH A  + +  +   ++K     
Sbjct: 300 PLHVASHYGNIK---LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GAS 355

Query: 264 KNCRNYTNQTALDVLKESGTKE 285
            N  +    T L + K  G   
Sbjct: 356 PNEVSSDGTTPLAIAKRLGYIS 377

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 6e-24
 Identities = 54/283 (19%), Positives = 106/283 (37%), Gaps = 13/283 (4%)

Query: 1   IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATL 60
           +  A  +G + +   +++       A  +   TPLH A    N +I  LLL         
Sbjct: 136 LHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HS 193

Query: 61  LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
                 +   +A ++  V V +  L Q       E     TPLH+A   G  ++V  +  
Sbjct: 194 PAWNGYTPLHIAAKQNQVEVAR-SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL-L 251

Query: 121 VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHV 180
            + +     +K+   PLH  ++ G+V +  +L+     +        YTPLH A+  G++
Sbjct: 252 SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG-YTPLHVASHYGNI 310

Query: 181 KILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES-FDFTGLLHQQDQFGNT 239
           K+++ F+       N  T  G +  H A + G  +    L ++        ++    G T
Sbjct: 311 KLVK-FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS----PNEVSSDGTT 365

Query: 240 VLHLAILRNNYQLAEYI--IKKTKVDKNCRNYTNQTALDVLKE 280
            L +A       + + +  +          +    +  + + E
Sbjct: 366 PLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDE 408

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 1e-25
 Identities = 48/271 (17%), Positives = 97/271 (35%), Gaps = 14/271 (5%)

Query: 25  AAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLM 84
           AAV +     L +A +  + ++   LL+    V     +   +    A +    ++V+L+
Sbjct: 1   AAVED--NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL 58

Query: 85  LNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG 144
           L         +    +  L  AI+     +   + K   +   + D         A+  G
Sbjct: 59  LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK--GADVNECDFYGFTAFMEAAVYG 116

Query: 145 NVEITKLLLNSKPD---------MALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
            V+  K L     +            +    G T L  AA  GHV++L+  +       N
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 196 CLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGL-LHQQDQFGNTVLHLAILRNNYQLAE 254
                G      AL     +    +       G  ++ + + G T L LA+ + +  L +
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236

Query: 255 YIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
            ++++  ++ N  +   +TAL +  E   K+
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKK 267

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.5 bits (244), Expect = 1e-23
 Identities = 62/280 (22%), Positives = 105/280 (37%), Gaps = 18/280 (6%)

Query: 1   IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATL 60
           IKA      ++LV ++++    +     E   TPLH A +    +I  LLL+       L
Sbjct: 10  IKAVQN-EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG-ADPVL 67

Query: 61  LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
             +   + FLLA   G V ++KL L++      E D    T    A   GK+  +K + K
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGA-DVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 121 VRPS---------FCEQADKNRCLPLHYASRIGNVEITKLLLNSK---PDMALQYNNNGY 168
              +           E+  K     L  A+  G+VE+ K+LL+      +       N  
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186

Query: 169 TPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTG 228
                ++ +  V+ +   +       N     G T   LA+          L E      
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE- 245

Query: 229 LLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRN 268
            ++  D  G T L LA+     ++AE + K+     +C +
Sbjct: 246 -INDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCGD 283

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.7 bits (226), Expect = 5e-21
 Identities = 38/263 (14%), Positives = 83/263 (31%), Gaps = 15/263 (5%)

Query: 28  NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
             KLE  L         E+   L   +    +      Q    ++       V     N 
Sbjct: 36  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 95

Query: 88  SWLMEFEEDRDESTPLHVAISRGKIDIVKEILK--VRPSFCEQADKNRCLPLHYASRIGN 145
              +    D   +TPLH   S   +++VK ++K      + +   ++  +    +    +
Sbjct: 96  QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYD 155

Query: 146 VEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVK------------ILEAFIASSPTS 193
               + LL+      +  ++   T LH   I   +             ++   +      
Sbjct: 156 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP 215

Query: 194 FNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLA 253
               T + ++  +      K +    L   +    +L+ QD  G+T L++A    N  + 
Sbjct: 216 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIV 275

Query: 254 EYIIKKTKVDKNCRNYTNQTALD 276
           + ++     D    N +    +D
Sbjct: 276 DALLDY-GADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.2 bits (178), Expect = 6e-15
 Identities = 32/201 (15%), Positives = 58/201 (28%), Gaps = 19/201 (9%)

Query: 25  AAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRR---GHVNVV 81
             V+E   TPLH      N E+   L+K         +   +S  + A +          
Sbjct: 101 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTF 159

Query: 82  KLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFC------------EQA 129
           + +L+  +     ED    T LH  I    +       K                  +  
Sbjct: 160 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG 219

Query: 130 DKNRCLPLHYASRIGNVEITKLLLNSKPDMAL--QYNNNGYTPLHQAAINGHVKILEAFI 187
              +    +  +      I + L        +    ++NG T L+ AA  G++ I++A +
Sbjct: 220 TNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL 279

Query: 188 ASSPTSFNCLTTDGDTVFHLA 208
                        G       
Sbjct: 280 -DYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.1 bits (152), Expect = 2e-11
 Identities = 22/165 (13%), Positives = 49/165 (29%), Gaps = 25/165 (15%)

Query: 13  VTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLA 72
              ++      +   +    T LH           +   K  L        +    +++ 
Sbjct: 159 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYL--------DILMGWIVK 210

Query: 73  CRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVR--PSFCEQAD 130
            +   +                   ++ +  +      K  I++ +       +     D
Sbjct: 211 KQNRPIQ--------------SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQD 256

Query: 131 KNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAA 175
            N    L+ A+R+GN+ I   LL+   D  +  N +G  P+   A
Sbjct: 257 SNGDTCLNIAARLGNISIVDALLDYGADPFIA-NKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.0 bits (149), Expect = 4e-11
 Identities = 22/166 (13%), Positives = 58/166 (34%), Gaps = 2/166 (1%)

Query: 94  EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
           E+       L   +     ++   +     +   +   +     H +      E+     
Sbjct: 34  EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFP 93

Query: 154 NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
           N++ ++ +  + +G TPLH      ++++++  +    ++       G++    A++   
Sbjct: 94  NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCLVKAVKSVN 152

Query: 214 -YNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
            Y++  F A        L  +D    T+LH  I+ +         K
Sbjct: 153 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAK 198

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (209), Expect = 2e-19
 Identities = 53/209 (25%), Positives = 78/209 (37%), Gaps = 7/209 (3%)

Query: 69  FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ 128
                  G +  +K  +     +    D+D  T LH A S G  +IV+ +L++     ++
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188
            D     PLH A+  G  EI K LL     +    N NG TPLH AA     +I    + 
Sbjct: 67  DDAGWS-PLHIAASAGRDEIVKALLGKGAQVNAV-NQNGCTPLHYAASKNRHEIAVMLL- 123

Query: 189 SSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRN 248
               + +       T  H A   G       L          + QD  GNT LHLA    
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS---TNIQDTEGNTPLHLACDEE 180

Query: 249 NYQLAEYIIKKTKVDKNCRNYTNQTALDV 277
             + A+ ++ +        N   +T L V
Sbjct: 181 RVEEAKLLVSQ-GASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 4e-17
 Identities = 46/213 (21%), Positives = 72/213 (33%), Gaps = 38/213 (17%)

Query: 8   GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQG------------------------- 42
           G +E + E I     L    ++   T LH AC  G                         
Sbjct: 14  GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 73

Query: 43  --------NAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFE 94
                     EI   LL     V   +NQ   +    A  +    +  ++L      +  
Sbjct: 74  LHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-A 131

Query: 95  EDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLN 154
           +D  E+T +H A ++G + +   IL    +     D     PLH A     VE  KLL++
Sbjct: 132 KDHYEATAMHRAAAKGNLKM-IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 190

Query: 155 SKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
               + ++ N    TPL  A   G   IL+  +
Sbjct: 191 QGASIYIE-NKEEKTPLQVAK-GGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 3e-12
 Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 9/221 (4%)

Query: 135 LPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSF 194
           L +   +  G +E  K  + +   +A + + +  T LH A   GH +I+E  +       
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 195 NCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAE 254
           +        +   A           L         ++  +Q G T LH A  +N +++A 
Sbjct: 65  DKDDAGWSPLHIAASAGRDEIVKALL----GKGAQVNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 255 YIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEP----NGSPKHLQQYKDL 310
            +++    + + +++   TA+      G  +     L                L    D 
Sbjct: 121 MLLEG-GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE 179

Query: 311 SKRQIKELSKRYKSRRDKKNELQREALQNARNTIILVAVLI 351
            + +  +L     +    +N+ ++  LQ A+  + L+   +
Sbjct: 180 ERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRM 220

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (191), Expect = 7e-17
 Identities = 54/252 (21%), Positives = 81/252 (32%), Gaps = 20/252 (7%)

Query: 23  LVAAVNEKLETPLHEACRQGNAEISALLLK--TNLFVATLLNQERQSAFLLACRRGHVNV 80
           +   V E  +T LH A    +      LL          L N   Q+A  LA   G  + 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 81  VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD---------- 130
           V+  L  +       +R   T LH+A           +L+ RPS    A           
Sbjct: 61  VE-KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119

Query: 131 --KNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188
                  P    S+       +             N +G+TPLH A I+   +++     
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 189 SSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGL-LHQQDQFGNTVLHLAILR 247
           +         T G T  HLA+     +    L ++    G     +   G T L  A+LR
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA----GADPTARMYGGRTPLGSALLR 235

Query: 248 NNYQLAEYIIKK 259
            N  LA  +   
Sbjct: 236 PNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.3 bits (186), Expect = 3e-16
 Identities = 40/234 (17%), Positives = 68/234 (29%), Gaps = 18/234 (7%)

Query: 66  QSAFLLACRRGHVNVVKLMLNQSWLMEF--EEDRDESTPLHVAISRGKIDIVKEILKVRP 123
            +A  LA    H   +  +L  S   E+   ++    T LH+A   G+   V+++     
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 124 SFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN------------NGYTPL 171
                         H A R+       +LL  +P      ++              + P 
Sbjct: 70  GVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 172 HQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLH 231
              +        E               DG T  H+A+          L ++        
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN--K 186

Query: 232 QQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
            +   G T LHLA+      + E ++K    D   R Y  +T L          
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNPI 239

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.3 bits (155), Expect = 3e-12
 Identities = 32/156 (20%), Positives = 46/156 (29%), Gaps = 13/156 (8%)

Query: 130 DKNRCLPLHYASRIGNVEITKLLLNSKPDMAL--QYNNNGYTPLHQAAINGHVKILEAFI 187
            ++    LH A    +      LL            N+ G T LH AAI G        +
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST-VEKL 64

Query: 188 ASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES-------FDFTGLLHQQDQFGNTV 240
            ++          G T  HLA R   +     L +           T L   QD   +T 
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 241 LHLAIL---RNNYQLAEYIIKKTKVDKNCRNYTNQT 273
              A +    N     E   +  ++     NY   T
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (152), Expect = 8e-12
 Identities = 34/233 (14%), Positives = 58/233 (24%), Gaps = 50/233 (21%)

Query: 4   ATGFGHIELVTEIIKLC--PQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLL 61
           A    H   +  ++      + +   N+  +T LH A   G A     L         + 
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG-AGVLVA 74

Query: 62  NQERQSAFLLACRRGHVNVVKLMLNQSW---------LMEFEEDRDESTPLHVAISRGKI 112
            +   +A  LACR        ++L              +   +D    T    A    + 
Sbjct: 75  ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134

Query: 113 DIVKEILKVRPS-------------------------------------FCEQADKNRCL 135
           +   E                                              +        
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT 194

Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188
           PLH A       + +LLL +  D   +    G TPL  A +  +  +     A
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADPTAR-MYGGRTPLGSALLRPNPILARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 5/113 (4%)

Query: 164 NNNGYTPLHQAAINGHVKILEAFIA--SSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA 221
             +G T LH A I+ H   L+  +   +     +     G T  HLA   G+ +    L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 222 ESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTA 274
            +          ++ G+T LHLA     +  A  +++         + T  T 
Sbjct: 66  AAGAGV---LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 20/79 (25%), Positives = 26/79 (32%)

Query: 194 FNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLA 253
           F  +T DGDT  HLA+         FL         L  Q+  G T LHLA +       
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 254 EYIIKKTKVDKNCRNYTNQ 272
           E +              + 
Sbjct: 62  EKLYAAGAGVLVAERGGHT 80

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 79.6 bits (195), Expect = 9e-17
 Identities = 36/269 (13%), Positives = 69/269 (25%), Gaps = 33/269 (12%)

Query: 28  NEKLETPLHEACRQGNA---EISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLM 84
             K E     A   G +   +   LLL ++  V  ++  E   AF LA   GH++V+  +
Sbjct: 87  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRL 145

Query: 85  LNQSWLMEFEEDRDE-STPLHVAISRGKIDIVKEILKVRPSF--CEQADKNRCLPLHYAS 141
              +        + E      +A   G + ++  + ++ P+        +N       A 
Sbjct: 146 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 205

Query: 142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDG 201
             G+  +   L        L                G   +                 + 
Sbjct: 206 GRGHHNVINFL--------LDCPVMLAYAEIHEFEYGEKYVNPFIA-----RHVNRLKEM 252

Query: 202 DTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK--- 258
              F L+   G ++          F  L           L             +++    
Sbjct: 253 HDAFKLSNPDGVFDLVTKSECLQGFYML---------RNLIRRNDEVLLDDIRFLLSIPG 303

Query: 259 -KTKVDKNCRNYTNQTALDVLKESGTKEA 286
            K               L +    G + A
Sbjct: 304 IKALAPTATIPGDANELLRLALRLGNQGA 332

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 74.5 bits (182), Expect = 3e-15
 Identities = 30/262 (11%), Positives = 66/262 (25%), Gaps = 27/262 (10%)

Query: 3   AATGFGHIELVTEIIKLCPQ--LVAAVNEKLETPLHEACRQGNAEISALLLKTNL-FVAT 59
            A   G    +  +  L     +V  +  +       A   G+  +   L +     +  
Sbjct: 96  VAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA 155

Query: 60  LLNQERQSAFLLACRRGHVNVVKLMLNQSWLME--FEEDRDESTPLHVAISRGKIDIVKE 117
           ++  E   AF LA   GH++V+  +   +        +  +       A+ RG  +++  
Sbjct: 156 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF 215

Query: 118 ILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAIN 177
           +L                   +    G   +   +               +     +  +
Sbjct: 216 LLD--------CPVMLAYAEIHEFEYGEKYVNPFIARHV-----NRLKEMHDAFKLSNPD 262

Query: 178 GHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQ--QDQ 235
           G   ++         S                     +   FL        L        
Sbjct: 263 GVFDLVTK-------SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG 315

Query: 236 FGNTVLHLAILRNNYQLAEYII 257
             N +L LA+   N      ++
Sbjct: 316 DANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 67.6 bits (164), Expect = 8e-13
 Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 15/220 (6%)

Query: 54  NLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKID 113
           NL +  + N E      L       N+ +  ++ + L        E+  + +  ++    
Sbjct: 1   NLTIHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQ 60

Query: 114 IVKEI----------LKVRPSFCEQADKNRCLPLHYASRIGN---VEITKLLLNSKPDMA 160
           + + +           K   S   +      +    A+  G    ++   LLL S   + 
Sbjct: 61  VRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK 120

Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNC-LTTDGDTVFHLALRFGKYNAFIF 219
           +      Y     AA NGH+ +L      +PT     +  +    F LA   G  +    
Sbjct: 121 VI-QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNR 179

Query: 220 LAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
           L E          Q +        A+ R ++ +  +++  
Sbjct: 180 LCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC 219

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.9 bits (131), Expect = 9e-09
 Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 16/138 (11%)

Query: 28  NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
              L          G   ++  + +          +E   AF L+   G  ++V      
Sbjct: 220 PVMLAYAEIHEFEYGEKYVNPFIARHVN-----RLKEMHDAFKLSNPDGVFDLVTKSECL 274

Query: 88  SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFC----EQADKNRCLPLHYASRI 143
                  +       L        +D ++ +L +              +    L  A R+
Sbjct: 275 -------QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 327

Query: 144 GNVEITKLLLNSKPDMAL 161
           GN     LLL+    +AL
Sbjct: 328 GNQGACALLLSIPSVLAL 345

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 77.9 bits (190), Expect = 1e-16
 Identities = 35/272 (12%), Positives = 80/272 (29%), Gaps = 22/272 (8%)

Query: 32  ETPLHEACR-QGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWL 90
           E+P+       G+  I+  + + ++ +     +  ++              + ++     
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 91  MEFEE-------DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRI 143
                       D DE+TPL +A+   +  +V  ++K            R    H A+  
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL-HQAAAN 117

Query: 144 GNVEITKLLLNSKPDMALQYNNNGYTPLHQ--AAINGHVK--------ILEAFIASSPTS 193
            +  +   +LNS          +          A N            + +        +
Sbjct: 118 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 177

Query: 194 FNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLA 253
               +        L       N  I      +      +QD+ G T + LA      ++ 
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 237

Query: 254 EYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
            Y+I++        + T+ TA  + + +    
Sbjct: 238 MYLIQQ-GASVEAVDATDHTARQLAQANNHHN 268

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 71.7 bits (174), Expect = 2e-14
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 95  EDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLN 154
           E     T LH A     + IVK ++  + S  ++ D++   P+  A++ G +E+   L+ 
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 242

Query: 155 SKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
               +    +   +T    A  N H  I++ F 
Sbjct: 243 QGASVEAV-DATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 1/103 (0%)

Query: 20  CPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVN 79
                 +   K  T LH A +  N  I   L+          +++ ++  +LA + G + 
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 80  VVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVR 122
           VV  ++ Q   +E   D  + T   +A +    +IV    + R
Sbjct: 236 VVMYLIQQGASVE-AVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (170), Expect = 2e-14
 Identities = 39/191 (20%), Positives = 67/191 (35%), Gaps = 8/191 (4%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEK---LETPLHEACRQGNAEISALLLKTNLFVATL 60
           A       L  E+I+     +A +N +    +TPLH A      EI+  LL         
Sbjct: 9   AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 68

Query: 61  LNQERQSAFLLACRRGHVNVVKLMLNQS----WLMEFEEDRDESTPLHVAISRGKIDIVK 116
             +      L   +    +V  L  + +      +    + +  T LH+A   G + IV+
Sbjct: 69  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 128

Query: 117 EILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAI 176
            ++ +      Q   N    LH A  + N ++  LLL    D+       GY+P      
Sbjct: 129 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV-TYQGYSPYQLTWG 187

Query: 177 NGHVKILEAFI 187
               +I +   
Sbjct: 188 RPSTRIQQQLG 198

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 1e-09
 Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 6/193 (3%)

Query: 98  DESTPLHVAISRGKIDIVKEILKVRPS---FCEQADKNRCLPLHYASRIGNVEITKLLLN 154
           D  + LH+AI   +  +  E+++       F    +  +  PLH A      EI + LL 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 155 SKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKY 214
           +  D  L+                   +     + +    + +    +   H  L     
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 215 NAFIFLAESFDFTGLLHQQDQF--GNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQ 272
           + ++ + E     G      +   G T LHLA+   N  L   ++K    D N   Y   
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGY 179

Query: 273 TALDVLKESGTKE 285
           +   +     +  
Sbjct: 180 SPYQLTWGRPSTR 192

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 34  PLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEF 93
            LH A   G   I  LL+     V        ++A  LA    + ++V L+L     +  
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN- 172

Query: 94  EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLP 136
                  +P  +   R    I +++ ++        +  + LP
Sbjct: 173 RVTYQGYSPYQLTWGRPSTRIQQQLGQL------TLENLQMLP 209

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.6 bits (171), Expect = 2e-14
 Identities = 30/217 (13%), Positives = 64/217 (29%)

Query: 71  LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD 130
            AC       V+ +L+    +  ++D+D   PLH ++S    +I   +L    +      
Sbjct: 6   QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY 65

Query: 131 KNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASS 190
            +      +        +  +       +    N      +    +    K  E      
Sbjct: 66  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 125

Query: 191 PTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNY 250
               +    D      L       +  +           ++ QD+ G T L  A+   + 
Sbjct: 126 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 185

Query: 251 QLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAF 287
             A  +++K   + +  +     A DV      K+ F
Sbjct: 186 DAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.5 bits (168), Expect = 5e-14
 Identities = 39/230 (16%), Positives = 84/230 (36%), Gaps = 9/230 (3%)

Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
            PLH+AC +        LL +   +    +Q+ +     +       +   +L++   + 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 93  FEEDRDESTPLHVAISRGKIDIVKEIL---KVRPSFCEQADKNRCLPLHYASRIGNVEIT 149
            ++  D+S      I+    ++        +       +        LH A      E++
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 150 KLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLAL 209
           + L+ +   + ++ +     PLH+AA  G +K++E       ++ N     G T    AL
Sbjct: 122 QFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 210 RFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
             G  +A + L E +         D  G     +A+   N Q+ ++ +  
Sbjct: 181 AEGHGDAAVLLVEKYG--AEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.8 bits (161), Expect = 4e-13
 Identities = 42/209 (20%), Positives = 81/209 (38%), Gaps = 2/209 (0%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLK--TNLFVATLL 61
           A        V E++   P L+   ++    PLH +      EI++ LL    N+ +    
Sbjct: 7   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 66

Query: 62  NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKV 121
           +    + F +AC  G++ VVK + ++    +  +  ++           K   V + L  
Sbjct: 67  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 126

Query: 122 RPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVK 181
             +     DK   +PLH A+ +G++++ +LL           +  G+TPL  A   GH  
Sbjct: 127 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 186

Query: 182 ILEAFIASSPTSFNCLTTDGDTVFHLALR 210
                +      ++ +   G     +AL 
Sbjct: 187 AAVLLVEKYGAEYDLVDNKGAKAEDVALN 215

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 1e-12
 Identities = 30/214 (14%), Positives = 61/214 (28%), Gaps = 8/214 (3%)

Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
           PLH A         + LL+SKP + LQ + +G  PLH +      +I    ++       
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 196 CLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEY 255
               D        +     N  +  +           +            +   +     
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 256 IIKKTKVDKNCRNYTNQTALDVLKESGTKEAF-------SSELQSVEEPNGSPKHLQQYK 308
            + +       ++  NQ  L      G+ +          S +   ++   +P      +
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 182

Query: 309 DLSKRQIKELSKRYKSRRDKKNELQREALQNARN 342
                    L ++Y +  D  +    +A   A N
Sbjct: 183 G-HGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 215

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 6/38 (15%), Positives = 14/38 (36%)

Query: 238 NTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
           N  LH A + N +   + ++         ++   +  L
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPL 38

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 70.1 bits (170), Expect = 7e-14
 Identities = 43/254 (16%), Positives = 78/254 (30%), Gaps = 15/254 (5%)

Query: 27  VNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLN 86
           V          AC  G+ E    LL+    +    N +  +A   AC   +V++VK ++ 
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVE 94

Query: 87  QSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV 146
               +   ++           +      + E L  + +     +     PL  A      
Sbjct: 95  NGANINQPDNEGWIPLHA--AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME 152

Query: 147 EITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFH 206
           E+ +  +N +              + + A          ++ S   +       G T  H
Sbjct: 153 ELLQNEVNRQGVDIEAARKEEERIMLRDARQ--------WLNSGHINDVRHAKSGGTALH 204

Query: 207 LALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNC 266
           +A   G       L         ++ +D  G T LH A      +    +++    D   
Sbjct: 205 VAAAKGYTEVLKLL---IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEA 260

Query: 267 RNYTNQTALDVLKE 280
            N   QTA DV  E
Sbjct: 261 VNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.5 bits (158), Expect = 2e-12
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 4/116 (3%)

Query: 72  ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADK 131
              R  +   +  LN   + +    +   T LHVA ++G  +++K +L          D 
Sbjct: 172 EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK-LLIQARYDVNIKDY 230

Query: 132 NRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAA--INGHVKILEA 185
           +   PLH A+  G  E  ++L+ +  DM    N  G T    A   I G+++ L+ 
Sbjct: 231 DGWTPLHAAAHWGKEEACRILVENLCDMEAV-NKVGQTAFDVADEDILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 27/230 (11%)

Query: 3   AATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLN 62
           AA   G  E V  +++     +   N    T LH+AC   N ++   L++    +    N
Sbjct: 46  AACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104

Query: 63  QERQSAFLLACRRGHVNVVKLML-------------------NQSWLMEFEEDRDESTPL 103
           +        A          L+                     +  + E  ++      +
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV 164

Query: 104 HVAISRG-----KIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPD 158
            +  +R       +   ++ L        +  K+    LH A+  G  E+ KLL+ ++ D
Sbjct: 165 DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224

Query: 159 MALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLA 208
           +    + +G+TPLH AA  G  +     +  +      +   G T F +A
Sbjct: 225 VN-IKDYDGWTPLHAAAHWGKEEACRILV-ENLCDMEAVNKVGQTAFDVA 272

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 1e-13
 Identities = 40/226 (17%), Positives = 77/226 (34%), Gaps = 11/226 (4%)

Query: 66  QSAFLLACRRGHVNVVKLMLNQSWLMEFE---EDRDESTPLHVAISRGKIDIVKEILKVR 122
            +   +A  +G++  V  ++N       E    +    TPLH+A+    +  V  +L   
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV-ITTLPSVVRLLVTA 62

Query: 123 PSFCEQADKNRCLPLHYASRIGNVEITKLLLNSK---PDMALQYNNNGYTPLHQAAINGH 179
            +     D++     H A    +    + LL+S           N +G T LH A     
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 180 VKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNT 239
            + ++  +             G +    A+     +    L +        + Q   G++
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV---NAQMYSGSS 179

Query: 240 VLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
            LH A  R    L   +++    D + +N  N T L V +     +
Sbjct: 180 ALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVID 224

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (157), Expect = 1e-12
 Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 9/215 (4%)

Query: 4   ATGFGHIELVTEIIKLCPQLVAAVNEK---LETPLHEACRQGNAEISALLLKTNLFVATL 60
           A   G++  V  ++ L  Q    ++      +TPLH A       +   LL T       
Sbjct: 10  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR-LLVTAGASPMA 68

Query: 61  LNQERQSAFLLACRRGHVNVVKLMLNQ---SWLMEFEEDRDESTPLHVAISRGKIDIVKE 117
           L++  Q+A  LAC       ++ +L+      L     + D  T LHVA++    + V+ 
Sbjct: 69  LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQL 128

Query: 118 ILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAIN 177
           +L+          K+   PL +A    ++ + + LL            +G + LH A+  
Sbjct: 129 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ-LLLQHGANVNAQMYSGSSALHSASGR 187

Query: 178 GHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG 212
           G + ++   +  S    +      DT   +A    
Sbjct: 188 GLLPLVRTLV-RSGADSSLKNCHNDTPLMVARSRR 221

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 34  PLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEF 93
           PL  A    +  +  LLL+    V         SA   A  RG + +V+ ++        
Sbjct: 147 PLIHAVENNSLSMVQLLLQHGANVNAQ-MYSGSSALHSASGRGLLPLVRTLVRSGADSS- 204

Query: 94  EEDRDESTPLHVAISRGKIDIVK 116
            ++    TPL VA SR  IDI++
Sbjct: 205 LKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 166 NGYTPLHQAAINGHVKILEAFI---ASSPTSFNCLTTDGDTVFHLALRFGKYNAFIF 219
           +G TPLH A + G++  +   +          +       T  HLA+     +    
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 58

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
           T LH A      E   LLL+    +  +  +  +S  + A     +++V+ +L Q     
Sbjct: 112 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ-LLLQHGANV 170

Query: 93  FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITK 150
             +    S+ LH A  RG + +V+ +++         + +   PL  A     ++I +
Sbjct: 171 NAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILR 227

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 64.0 bits (154), Expect = 2e-12
 Identities = 37/209 (17%), Positives = 75/209 (35%), Gaps = 37/209 (17%)

Query: 11  ELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLL------------------- 51
           +++++++    +L A +++  ET LH A R   A+ +  LL                   
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 52  --KTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEE-----------DRD 98
               +      +    ++  L A        + L    +     E+           D  
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 122

Query: 99  ESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPD 158
             T LH A +    + V  +L    +  +  D     PL  A+R G+ E +K LL++  +
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLDNFAN 181

Query: 159 MALQYNNNGYTPLHQAAINGH---VKILE 184
             +  ++    P   A+   H   V++L+
Sbjct: 182 REIT-DHMDRLPRDVASERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 58.3 bits (139), Expect = 2e-10
 Identities = 40/206 (19%), Positives = 74/206 (35%), Gaps = 6/206 (2%)

Query: 80  VVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHY 139
           V+  +L Q   +    D+   T LH+A    + D  K  L    +     D     PLH 
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAK-RLLDAGADANSQDNTGRTPLHA 62

Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
           A     + + ++LL ++        ++G TPL  AA      ++E  + ++    N    
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVE-DLITADADINAADN 121

Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
            G T  H        N    +            QD    T L LA    +Y+ ++ ++  
Sbjct: 122 SGKTALH---WAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN 178

Query: 260 TKVDKNCRNYTNQTALDVLKESGTKE 285
              ++   ++ ++   DV  E    +
Sbjct: 179 -FANREITDHMDRLPRDVASERLHHD 203

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 41/212 (19%), Positives = 85/212 (40%), Gaps = 6/212 (2%)

Query: 44  AEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPL 103
           A++ + LL     +   +++  +++  LA R    +  K  L  +      +D    TPL
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKR-LLDAGADANSQDNTGRTPL 60

Query: 104 HVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQY 163
           H A++   + + + +L+ R +       +   PL  A+R+    + + L+ +  D+    
Sbjct: 61  HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA- 119

Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES 223
           +N+G T LH AA   + + +   +     + +      +T   LA R G Y A   L ++
Sbjct: 120 DNSGKTALHWAAAVNNTEAVN-ILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN 178

Query: 224 FDFTGLLHQQDQFGNTVLHLAILRNNYQLAEY 255
           F         D        +A  R ++ +   
Sbjct: 179 F---ANREITDHMDRLPRDVASERLHHDIVRL 207

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.6 bits (114), Expect = 4e-07
 Identities = 24/198 (12%), Positives = 50/198 (25%), Gaps = 8/198 (4%)

Query: 147 EITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFH 206
           ++   LL    ++    +  G T LH AA        +  + +   + +   T    +  
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 207 LALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNC 266
                   +A                      T   +   R   +     +     D N 
Sbjct: 63  ----AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA 118

Query: 267 RNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSPK----HLQQYKDLSKRQIKELSKRY 322
            + + +TAL         EA +  L      +         L         +  +     
Sbjct: 119 ADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN 178

Query: 323 KSRRDKKNELQREALQNA 340
            + R+  + + R     A
Sbjct: 179 FANREITDHMDRLPRDVA 196

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.1 bits (141), Expect = 4e-11
 Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 5/154 (3%)

Query: 31  LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWL 90
           L   L EA R G  +   +L+            +      L     + +     +     
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPF----TTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57

Query: 91  MEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITK 150
           +  +             +      + E+L    +     D  +   LH+A+   + E+ +
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117

Query: 151 LLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
           LL+    D+  Q +    T    +  NG+  + E
Sbjct: 118 LLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLAE 150

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.8 bits (104), Expect = 4e-06
 Identities = 18/159 (11%), Positives = 35/159 (22%), Gaps = 7/159 (4%)

Query: 98  DESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKP 157
           D    L  A   G+ D V+ ++         A             +              
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMA------NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLL 54

Query: 158 DMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF 217
              +  +           +                  +    D   +  L       +  
Sbjct: 55  RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE 114

Query: 218 IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI 256
           +           +H Q +F  T   ++I   N  LAE +
Sbjct: 115 VVELLIKYGA-DVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 5e-09
 Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 4/156 (2%)

Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
             L  A  +G+ E    LL+ N+ V    N +              N             
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNV----NAQNGFGRTALQVMKLGNPEIARRLLLRGAN 58

Query: 93  FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
            +        +    +R       + L    +     D    LPLH A++ G++ + + L
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 153 LNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188
           +          N+ G T    A + G  +++    A
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 3e-06
 Identities = 16/159 (10%), Positives = 39/159 (24%), Gaps = 6/159 (3%)

Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
             L  A +RG ++ +  +L+         + N        +          +        
Sbjct: 3   NELASAAARGDLEQLTSLLQ------NNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 56

Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220
              +    T             L+          +    D +    L L   + +  +  
Sbjct: 57  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 116

Query: 221 AESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
                    +  ++  G+T   LA L    ++   +   
Sbjct: 117 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 7   FGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLK 52
            GH+ +V  ++K     V   N K +T    A   G  E+ +L+  
Sbjct: 109 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (120), Expect = 3e-08
 Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 10/134 (7%)

Query: 62  NQERQSAFLLACRRGHVNVVKLMLNQ-----SWLMEFEEDRDESTPLHVAI---SRGKID 113
              +  +   A +   +  +             +        + T LH+A+    R  + 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 114 IVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQ 173
           IV  +++   +  +Q  K      +         +  LL           N +G TPL  
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI--ANESGETPLDI 120

Query: 174 AAINGHVKILEAFI 187
           A    H    E   
Sbjct: 121 AKRLKHEHCEELLT 134

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 20/150 (13%), Positives = 37/150 (24%), Gaps = 9/150 (6%)

Query: 129 ADKNRCL-PLHYASRIGNVEITKLLLNSKPDM-----ALQYNNNGYTPLHQAAINGHVKI 182
           AD    L  L  A +  ++           D+         +    T LH A  +     
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 183 LEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTG-LLHQQDQFGNTVL 241
           L   I       +            AL +          +        +   ++ G T L
Sbjct: 61  LH--IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL 118

Query: 242 HLAILRNNYQLAEYIIKKTKVDKNCRNYTN 271
            +A    +    E + +      N   +  
Sbjct: 119 DIAKRLKHEHCEELLTQALSGRFNSHVHVE 148

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 16/121 (13%), Positives = 38/121 (31%), Gaps = 10/121 (8%)

Query: 8   GHIELVTEIIK-----LCPQLVAAVNEKLETPLHEACR---QGNAEISALLLKTNLFVAT 59
             I  + +             +A  +E  ET LH A R   + +  I   L++ +  +  
Sbjct: 17  RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK 76

Query: 60  LLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEIL 119
              +   +            +  L+  ++ +     +    TPL +A         + + 
Sbjct: 77  QTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA--NESGETPLDIAKRLKHEHCEELLT 134

Query: 120 K 120
           +
Sbjct: 135 Q 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 18/130 (13%), Positives = 47/130 (36%), Gaps = 10/130 (7%)

Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQER-----QSAFLLACR---RGHVNVVKLM 84
             L EA +  +           + +   +         ++A  LA R   R  +++V  +
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 85  LNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG 144
           +  S  ++ +  +  +   +  ++     +   +     +  E A+++   PL  A R+ 
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL--RGKASIEIANESGETPLDIAKRLK 125

Query: 145 NVEITKLLLN 154
           +    +LL  
Sbjct: 126 HEHCEELLTQ 135

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 1e-07
 Identities = 20/127 (15%), Positives = 35/127 (27%), Gaps = 3/127 (2%)

Query: 29  EKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQS 88
           E     L  A  +G  E    LL+     A            +         V  +L   
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAG---ANPNAPNSYGRRPIQVMMMGSARVAELLLLH 57

Query: 89  WLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEI 148
                  D    T      +R        +L    +  +  D    LP+  A  +G+ ++
Sbjct: 58  GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV 117

Query: 149 TKLLLNS 155
            + L  +
Sbjct: 118 ARYLRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 4e-07
 Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 3/123 (2%)

Query: 68  AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCE 127
               A  RG V  V+ +L                   + +   ++  +  +    P+  +
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 128 QADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
            A   R +         +  +      ++ D+    +  G  P+  A   GH  +     
Sbjct: 66  PATLTRPVHDAAREGFLDTLVVLHRAGARLDV---RDAWGRLPVDLAEELGHRDVARYLR 122

Query: 188 ASS 190
           A++
Sbjct: 123 AAA 125

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-05
 Identities = 18/122 (14%), Positives = 33/122 (27%), Gaps = 5/122 (4%)

Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
            L  A+  G VE  + LL +  +      N   +   +      +               
Sbjct: 6   WLATAAARGRVEEVRALLEAGANP-----NAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 196 CLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEY 255
               D  T+        +      L         L  +D +G   + LA    +  +A Y
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 256 II 257
           + 
Sbjct: 121 LR 122

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.8 bits (109), Expect = 4e-07
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 3/117 (2%)

Query: 68  AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCE 127
            F+ A + G ++ VK  + +   +    +       + A       +   +LK       
Sbjct: 5   EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 64

Query: 128 QADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
                  L        G+V   KLLL+   D  ++   +G T L          +L+
Sbjct: 65  DKHHITPLLSAV--YEGHVSCVKLLLSKGADKTVK-GPDGLTALEATDNQAIKALLQ 118

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.3 bits (92), Expect = 7e-05
 Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 7/122 (5%)

Query: 32  ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLM 91
           +     A + G+ +     +     V   L   R+     A       +  L+L  + + 
Sbjct: 3   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62

Query: 92  EFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKL 151
             ++           +  G +  VK +L        +   +    L         +  K 
Sbjct: 63  APDKHHITPLLSA--VYEGHVSCVKLLLSKGADKTVK-GPDGLTALEATDN----QAIKA 115

Query: 152 LL 153
           LL
Sbjct: 116 LL 117

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.5 bits (90), Expect = 1e-04
 Identities = 9/109 (8%), Positives = 21/109 (19%), Gaps = 5/109 (4%)

Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
              +A + G+++  K  +    D+            + A            +        
Sbjct: 5   EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLE-----ILEFLLLKGA 59

Query: 196 CLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLA 244
            +           L          +            +   G T L   
Sbjct: 60  DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT 108

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 6e-07
 Identities = 29/157 (18%), Positives = 46/157 (29%), Gaps = 7/157 (4%)

Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
             L  A +RG +  V+ +L       +  ++     L            +LL        
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220
              +                      +       N     G    HLA++ G      FL
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLK---VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 221 AESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYII 257
           A   D    LH++D  G T L LA+ R    L + + 
Sbjct: 121 AAESD----LHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 7e-07
 Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 5/155 (3%)

Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
             L  A  +G+ +    LL   L     LN+  ++A  +         ++L+   +    
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 93  FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
            +                    V        +     D    LP+H A + G+  +   L
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVE---HGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 153 LNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
             ++ D+  + +  G TPL  A   G   +++   
Sbjct: 121 A-AESDLHRR-DARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 5/152 (3%)

Query: 3   AATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLN 62
            A   G ++ V  ++        A+N   +T L        A    LL +         +
Sbjct: 8   GAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTS 67

Query: 63  QERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVR 122
                             V +       +    D   + P+H+A+  G   +V  +    
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVP---DGTGALPIHLAVQEGHTAVVSFLAA-- 122

Query: 123 PSFCEQADKNRCLPLHYASRIGNVEITKLLLN 154
            S   + D     PL  A + G  ++  +L  
Sbjct: 123 ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 20/148 (13%), Positives = 44/148 (29%), Gaps = 31/148 (20%)

Query: 167 GYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDF 226
               L  AA  G V+ +   +       + L   G T   + +      A   L +    
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 227 T-----------------------------GLLHQQDQFGNTVLHLAILRNNYQLAEYII 257
                                           ++  D  G   +HLA+   +  +  ++ 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 258 KKTKVDKNCRNYTNQTALDVLKESGTKE 285
            ++  D + R+    T L++  + G ++
Sbjct: 122 AES--DLHRRDARGLTPLELALQRGAQD 147

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 13/124 (10%), Positives = 37/124 (29%), Gaps = 4/124 (3%)

Query: 67  SAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFC 126
           +  L +   G  ++V+ ++ +        D   +   +   +     +   +        
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 127 EQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTP--LHQAAINGHVKILE 184
             +D    L         NV++ K L+ S   +     ++  T     +    G+ +  +
Sbjct: 63  ADSDGWTPLHCAA--SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 120

Query: 185 AFIA 188
               
Sbjct: 121 FLYG 124

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 4/129 (3%)

Query: 33  TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
             L ++  +G  ++   ++      +  L  +     L          +   L Q  +  
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPS--LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 60

Query: 93  FEEDRDESTPLHVAISRGKIDIVKEILK--VRPSFCEQADKNRCLPLHYASRIGNVEITK 150
              D D  TPLH A S   + + K +++          +D             G  + ++
Sbjct: 61  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 120

Query: 151 LLLNSKPDM 159
            L   +  M
Sbjct: 121 FLYGVQEKM 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	539
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.83
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.82
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.82
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.78
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.77

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-39  Score=332.88  Aligned_cols=285  Identities=27%  Similarity=0.337  Sum_probs=221.3

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||+||..|+.++|++|++.|.+ ++.+|..|+||||+||+.|+.+++++|+++|+++ +..+.+|.||||+|+..|+.++
T Consensus         4 L~~Aa~~g~~~~v~~Ll~~g~~-in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~~g~t~L~~A~~~g~~~~   81 (408)
T d1n11a_           4 LHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNM   81 (408)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHCcCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHH
Confidence            7999999999999999999987 7889999999999999999999999999999987 7789999999999999999999


Q ss_pred             HHHHHhCCcccc--------------------------------cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccc
Q 040043           81 VKLMLNQSWLME--------------------------------FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ  128 (539)
Q Consensus        81 v~~Ll~~~~~~~--------------------------------~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~  128 (539)
                      +++|++......                                ...+..+.++++.|+..++.++++.|++++.++ +.
T Consensus        82 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~-~~  160 (408)
T d1n11a_          82 VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NA  160 (408)
T ss_dssp             HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TC
T ss_pred             HHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC-Cc
Confidence            999987544321                                123556778888888888888888888887776 66


Q ss_pred             cCCCCChHHhHHHHcCCHHHHHHHHcCCCccccc--------------------------------cccCCCCHHHHHHH
Q 040043          129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQ--------------------------------YNNNGYTPLHQAAI  176 (539)
Q Consensus       129 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~--------------------------------~d~~g~tpLh~Aa~  176 (539)
                      .+.+|.+|||+|+..|+.+++++|+++|++++..                                .+..|.||+|.|+.
T Consensus       161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  240 (408)
T d1n11a_         161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ  240 (408)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHH
Confidence            7788888888888888888888888887765432                                12234445555555


Q ss_pred             cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcc------------------------------c
Q 040043          177 NGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFD------------------------------F  226 (539)
Q Consensus       177 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~------------------------------~  226 (539)
                      .+..++++.++... ...+..+..|.|||+.|++.++.+++++|++.+.                              .
T Consensus       241 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~  319 (408)
T d1n11a_         241 EGHAEMVALLLSKQ-ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH  319 (408)
T ss_dssp             TTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT
T ss_pred             hCcHhHhhhhhccc-cccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccc
Confidence            55555555444433 2234445555555555555555555555554321                              1


Q ss_pred             ccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHH
Q 040043          227 TGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSE  290 (539)
Q Consensus       227 ~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~  290 (539)
                      +..+|.+|.+|+||||+|++.|+.++|++|+++ |+|+|.+|.+|+||||+|.+.|+.++++.+
T Consensus       320 g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~-GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         320 QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            345788999999999999999999999999954 999999999999999999999998887654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-34  Score=290.09  Aligned_cols=264  Identities=25%  Similarity=0.355  Sum_probs=213.4

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCC
Q 040043           32 ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGK  111 (539)
Q Consensus        32 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~  111 (539)
                      -||||+||..|+.++|++|++.|+++ +..|..|.||||+|+..|+.+++++|+++|++++ ..+.+|.||||+|+..|+
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~i-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~-~~~~~g~t~L~~A~~~g~   78 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-AKAKDDQTPLHCAARIGH   78 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS-CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTSCCHHHHHHHHTC
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCC
Confidence            39999999999999999999999887 6789999999999999999999999999999887 678899999999999999


Q ss_pred             HHHHHHHHhcCCcc--------------------------------ccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcc
Q 040043          112 IDIVKEILKVRPSF--------------------------------CEQADKNRCLPLHYASRIGNVEITKLLLNSKPDM  159 (539)
Q Consensus       112 ~~~v~~LL~~~~~~--------------------------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  159 (539)
                      .++++.|+...++.                                ....+..+.++++.|+..++.++++.|++++.++
T Consensus        79 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~  158 (408)
T d1n11a_          79 TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP  158 (408)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999998765432                                2334678899999999999999999999999999


Q ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccc---------------------------------CCCCcHHH
Q 040043          160 ALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLT---------------------------------TDGDTVFH  206 (539)
Q Consensus       160 ~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d---------------------------------~~g~t~Lh  206 (539)
                      +.. +.+|.+|||.|+..|+.++++.|+.++.+ ++..+                                 .+|.||||
T Consensus       159 ~~~-~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~  236 (408)
T d1n11a_         159 NAA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH  236 (408)
T ss_dssp             TCC-CSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CcC-CCcCchHHHHHHHcCCHHHHHHHHhcCCc-ccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHH
Confidence            876 88999999999999999999999987643 33333                                 44556666


Q ss_pred             HHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhc---------------------------
Q 040043          207 LALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK---------------------------  259 (539)
Q Consensus       207 ~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~---------------------------  259 (539)
                      +|+..+..++++++...   ....+..|..|.||||.|+..++.+++++|+++                           
T Consensus       237 ~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~  313 (408)
T d1n11a_         237 LAAQEGHAEMVALLLSK---QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV  313 (408)
T ss_dssp             HHHHTTCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred             HHHHhCcHhHhhhhhcc---ccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceee
Confidence            66666666666666554   223445555666666666666666665555532                           


Q ss_pred             -----cccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCCCch
Q 040043          260 -----TKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSPK  302 (539)
Q Consensus       260 -----~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~  302 (539)
                           .|+++|.+|.+|.||||+|++.|+.++++.+++.+++++....
T Consensus       314 ~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~  361 (408)
T d1n11a_         314 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS  361 (408)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCS
T ss_pred             eeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence                 3677888888999999999999999999999998888775444

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-34  Score=268.65  Aligned_cols=219  Identities=24%  Similarity=0.347  Sum_probs=181.8

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcC
Q 040043           31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRG  110 (539)
Q Consensus        31 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  110 (539)
                      ++++||.+|..|+.+.++.++..++...+.+|.+|+||||+|+..|+.+++++|++.+.... ..+..+.++++.++..|
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccc-ccccccccccccccccc
Confidence            57889999999999999888888887778889999999999999999999999998876665 45667788999999999


Q ss_pred             CHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhC
Q 040043          111 KIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASS  190 (539)
Q Consensus       111 ~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~  190 (539)
                      +.++++.|++++.++ +..|..|.||||+|+..|+.+++++|+++|.+++.. +..|.||||.|+..++.++++.|+...
T Consensus        82 ~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~-~~~~~t~L~~a~~~~~~~~~~~L~~~~  159 (223)
T d1uoha_          82 RDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKGNLKMIHILLYYK  159 (223)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCccchhhhhcCCcchhhhhcccc
Confidence            999999999888766 778888999999999999999999999988888765 888888999988888888888777655


Q ss_pred             CCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHh
Q 040043          191 PTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYII  257 (539)
Q Consensus       191 ~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll  257 (539)
                      . +++..|.+|+||||.|+.+|+.+++++|++.   +.+++.+|.+|+||||+| ..++.+++++|+
T Consensus       160 ~-~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~---Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll  221 (223)
T d1uoha_         160 A-STNIQDTEGNTPLHLACDEERVEEAKLLVSQ---GASIYIENKEEKTPLQVA-KGGLGLILKRMV  221 (223)
T ss_dssp             C-CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHC-CTTHHHHHHHHH
T ss_pred             c-eeeeccCCCCceeccccccCcHHHHHHHHHC---CCCCCCCCCCCCCHHHHH-HCCCHHHHhccc
Confidence            4 4677778888888888888888888888776   556777888888888877 357777777776

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-33  Score=270.22  Aligned_cols=266  Identities=18%  Similarity=0.199  Sum_probs=224.3

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHc
Q 040043           30 KLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISR  109 (539)
Q Consensus        30 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  109 (539)
                      +++|+||.|++.|+.++|++|++.|+++....+..|.||||+|+..|+.+++++|++.+.... ..+..+.+|.+.+...
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~-~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccc-ccccccchhhHHHhhc
Confidence            467899999999999999999999988866666789999999999999999999999887766 4666788899999999


Q ss_pred             CCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcccc---------ccccCCCCHHHHHHHcCCH
Q 040043          110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMAL---------QYNNNGYTPLHQAAINGHV  180 (539)
Q Consensus       110 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~---------~~d~~g~tpLh~Aa~~g~~  180 (539)
                      +..+.....++..... ...+..+.++++.|+..++...++.++....+...         ..+..|.||||+|++.|+.
T Consensus        83 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T d1wdya_          83 GSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             TCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             CCccccchhhhhcccc-cccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCH
Confidence            9999988888876655 55678899999999999999988888876555432         2245689999999999999


Q ss_pred             HHHHHHHHhCCCccccccCCCCcHHHHHHHhC----ChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHH
Q 040043          181 KILEAFIASSPTSFNCLTTDGDTVFHLALRFG----KYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI  256 (539)
Q Consensus       181 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~----~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L  256 (539)
                      ++++.|++..+..++..+..|.++++.+...+    ..+++++|++.   +..++.+|..|.||||.|+..++.+++++|
T Consensus       162 ~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~---ga~~n~~~~~g~t~L~~a~~~~~~~~v~~l  238 (285)
T d1wdya_         162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH---GADVNVRGERGKTPLILAVEKKHLGLVQRL  238 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT---TCCSSCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHC---CCCCCccCCCCCCccchhhhcCcHHHHHHH
Confidence            99999998877778888899998888776544    34577888776   556788899999999999999999999999


Q ss_pred             hhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCCC
Q 040043          257 IKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGS  300 (539)
Q Consensus       257 l~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~~  300 (539)
                      ++..|+++|.+|.+|.|||++|++.|+.++++.+|+.+++++..
T Consensus       239 L~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             HHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence            98889999999999999999999999999999999999988743

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-34  Score=267.30  Aligned_cols=216  Identities=24%  Similarity=0.314  Sum_probs=200.5

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||.+|..|+.+.|+.++...+..++.+|..|+||||+||..|+.+++++|++.+... ...+..+.++++.|+..|+.++
T Consensus         7 ~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i   85 (223)
T d1uoha_           7 VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEI   85 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccccccch
Confidence            356899999999999999999989999999999999999999999999999998776 4567788999999999999999


Q ss_pred             HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccc
Q 040043           81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA  160 (539)
Q Consensus        81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  160 (539)
                      +++|++++.+++ ..|.+|.||||+|+..|+.++++.|++.+.++ +..|..|.||||+|+..++.+++++|++.+.+++
T Consensus        86 ~~~Ll~~~~d~~-~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~  163 (223)
T d1uoha_          86 VKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN  163 (223)
T ss_dssp             HHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             hHHHhccCceeE-eeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhccccceee
Confidence            999999998876 68999999999999999999999999998876 7889999999999999999999999999999988


Q ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHh
Q 040043          161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAE  222 (539)
Q Consensus       161 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~  222 (539)
                      .. |.+|+||||.|+..|+.++++.|++.+ .+++..|.+|+||||+| ..|+.+++++|++
T Consensus       164 ~~-d~~g~TpL~~Aa~~g~~~~v~~LL~~G-ad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         164 IQ-DTEGNTPLHLACDEERVEEAKLLVSQG-ASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CC-CTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             ec-cCCCCceeccccccCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            76 999999999999999999999999886 45899999999999998 4799999999875

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-33  Score=270.02  Aligned_cols=232  Identities=22%  Similarity=0.152  Sum_probs=153.4

Q ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhcCcc--cccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHH
Q 040043           26 AVNEKLETPLHEACRQGNAEISALLLKTNLF--VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPL  103 (539)
Q Consensus        26 ~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~--~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~L  103 (539)
                      -.+++|+||||+||+.|+.+++++|++.+++  ..+..|..|+||||+|+..|+.+++++|+++|++++ ..|.+|.|||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~-~~d~~g~tpL   82 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHTAL   82 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCCHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccccc-ccccccchhh
Confidence            3578899999999999999999999987654  345678899999999999999999999999998877 5788999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCccccccCC---------CCChHHhHHHHc---CC-HHHHHHHHcCCCccccccccCCCCH
Q 040043          104 HVAISRGKIDIVKEILKVRPSFCEQADK---------NRCLPLHYASRI---GN-VEITKLLLNSKPDMALQYNNNGYTP  170 (539)
Q Consensus       104 h~A~~~g~~~~v~~LL~~~~~~~~~~d~---------~g~tpLh~A~~~---g~-~~~v~~Ll~~~~~~~~~~d~~g~tp  170 (539)
                      |+|+..++.++++.|++...........         .+.+....+...   .. ..........+.+++.. |.+|.||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~-d~~g~Tp  161 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTP  161 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCC-CTTSCCH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccc-cccCccc
Confidence            9999999999999998765433111100         011111111110   00 11111122223333332 6667777


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCH
Q 040043          171 LHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNY  250 (539)
Q Consensus       171 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~  250 (539)
                      ||+|+..|+.++++.|++.+.......+..|.||||+|++.++.+++++|++.   +.+++.+|.+|+||||+|+..++.
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~---gadin~~d~~g~t~L~~A~~~~~~  238 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA---GADPTARMYGGRTPLGSALLRPNP  238 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHTSSCH
T ss_pred             ccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHCCCH
Confidence            77777777777777777666655555556677777777777777777777665   445666677777777777777777


Q ss_pred             HHHHHHhhccccC
Q 040043          251 QLAEYIIKKTKVD  263 (539)
Q Consensus       251 ~iv~~Ll~~~~~~  263 (539)
                      +++++|++. |++
T Consensus       239 ~i~~~Ll~~-Ga~  250 (255)
T d1oy3d_         239 ILARLLRAH-GAP  250 (255)
T ss_dssp             HHHHHHHHT-TCC
T ss_pred             HHHHHHHHc-CCC
Confidence            777777643 554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-33  Score=263.04  Aligned_cols=225  Identities=21%  Similarity=0.282  Sum_probs=169.7

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccc--cccCCCCCcHHHHHHHc
Q 040043           32 ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME--FEEDRDESTPLHVAISR  109 (539)
Q Consensus        32 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~--~~~~~~g~t~Lh~A~~~  109 (539)
                      +||||+||+.|+.++++.|++.++...+.+|.+|+||||+|+..|+.+++++|+++++++.  ...+..|.+|+|+++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            5899999999999999999988777778889999999999999999999999999887654  24566788888888888


Q ss_pred             CCHHHHHHHHhcCCcc-ccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHH
Q 040043          110 GKIDIVKEILKVRPSF-CEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA  188 (539)
Q Consensus       110 g~~~~v~~LL~~~~~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~  188 (539)
                      +..++++.++..+... ....+..+.||++.++..++.++++.|++.+.+.... |.+|+||||.|+..|+.++++.|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccc-CCCCCCccchhhhcccccccccccc
Confidence            8888888877765543 2345666778888888888888888888877776665 7777888888888888888877777


Q ss_pred             hCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccC
Q 040043          189 SSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVD  263 (539)
Q Consensus       189 ~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~  263 (539)
                      .++..++..|.+|+||||+|+.+|+.+++++|++..  +.+++.+|.+|+||||+|+   +.+++++|+++ |+|
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~--gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~-g~d  228 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY--GAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN-VVD  228 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH--CCCSCCCCTTSCCTGGGCS---CHHHHHHHHHH-CCC
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhc--CCCCCCcCCCCCCHHHHHh---hHHHHHHHHHc-CCC
Confidence            766666667777777777777777777777766531  3456666777777777765   34566666643 543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-32  Score=265.00  Aligned_cols=262  Identities=24%  Similarity=0.269  Sum_probs=225.8

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||.|++.|+.|+|++|++.|+++-...+..|.||||+|+..|+.+++++|++.+... ...+..+.+|.+.|+..+..+.
T Consensus         9 L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   87 (285)
T d1wdya_           9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKL   87 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccc-cccccccchhhHHHhhcCCccc
Confidence            689999999999999999998833344567999999999999999999999999877 5567789999999999999999


Q ss_pred             HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcc---------ccccCCCCChHHhHHHHcCCHHHHHH
Q 040043           81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSF---------CEQADKNRCLPLHYASRIGNVEITKL  151 (539)
Q Consensus        81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~---------~~~~d~~g~tpLh~A~~~g~~~~v~~  151 (539)
                      ...+++...... ..+..+.++++.|+..|+...+..++......         ....+..|.||||+|+..|+.+++++
T Consensus        88 ~~~~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  166 (285)
T d1wdya_          88 LKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI  166 (285)
T ss_dssp             HHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHH
T ss_pred             cchhhhhccccc-ccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHH
Confidence            999999876554 56788999999999999999999998765443         22345679999999999999999999


Q ss_pred             HHcC-CCccccccccCCCCHHHHHHHc----CCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhccc
Q 040043          152 LLNS-KPDMALQYNNNGYTPLHQAAIN----GHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDF  226 (539)
Q Consensus       152 Ll~~-~~~~~~~~d~~g~tpLh~Aa~~----g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~  226 (539)
                      |++. |++++.. +..|.++++.+...    +..++++.|++.+.+ ++..|..|.||||.|+..|+.+++++|++..  
T Consensus       167 Ll~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~--  242 (285)
T d1wdya_         167 LLDEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQE--  242 (285)
T ss_dssp             HHHTSCCCTTCC-CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS--
T ss_pred             HHhccCCCcccc-cCCCCcccccccccccchHHHHHHHHHHHCCCC-CCccCCCCCCccchhhhcCcHHHHHHHHHcC--
Confidence            9965 6777665 88899888876553    345788999988654 7888999999999999999999999999853  


Q ss_pred             ccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCcccccc
Q 040043          227 TGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNY  269 (539)
Q Consensus       227 ~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~  269 (539)
                      +.+++.+|.+|+||||+|++.++.+++++|++ .|+|+|++|.
T Consensus       243 g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~-~GAd~n~~d~  284 (285)
T d1wdya_         243 HIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCGDL  284 (285)
T ss_dssp             SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSSCSCCSSC
T ss_pred             CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcccC
Confidence            45789999999999999999999999999995 5999999874

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-32  Score=260.90  Aligned_cols=233  Identities=19%  Similarity=0.156  Sum_probs=182.9

Q ss_pred             ccccCCChHHHHHHHcCCHHHHHHHHhCCcccc--cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHH
Q 040043           60 LLNQERQSAFLLACRRGHVNVVKLMLNQSWLME--FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPL  137 (539)
Q Consensus        60 ~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~--~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpL  137 (539)
                      ..+.+|.||||+||+.|+.+++++|++++++..  ...+..|.||||+|+..|+.++++.|++.+.++ +..|.+|.|||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL   82 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTAL   82 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhh
Confidence            468899999999999999999999999876533  257889999999999999999999999999887 78899999999


Q ss_pred             hHHHHcCCHHHHHHHHcCCCccccccc---------cCCCC---HHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHH
Q 040043          138 HYASRIGNVEITKLLLNSKPDMALQYN---------NNGYT---PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVF  205 (539)
Q Consensus       138 h~A~~~g~~~~v~~Ll~~~~~~~~~~d---------~~g~t---pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L  205 (539)
                      |+|+..++.++++.|++.+........         ..+.+   ++..............+.......++.+|.+|+|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            999999999999999987654332111         01111   111111111112222222223335677889999999


Q ss_pred             HHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCch
Q 040043          206 HLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE  285 (539)
Q Consensus       206 h~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~  285 (539)
                      |+|+..++.+++++|++....  ..+.++..|+||||+|++.++.+++++|++ .|++++.+|..|+||||+|+..++.+
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~-~gadin~~d~~g~t~L~~A~~~~~~~  239 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGAD--LNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPI  239 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCHH
T ss_pred             cccccccccccccchhccccc--ccccccccccccccccccccHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            999999999999999997433  234567889999999999999999999996 59999999999999999999999999


Q ss_pred             hhHHHhhhccC
Q 040043          286 AFSSELQSVEE  296 (539)
Q Consensus       286 ~~~~~l~~~~~  296 (539)
                      +++.+++.+++
T Consensus       240 i~~~Ll~~Ga~  250 (255)
T d1oy3d_         240 LARLLRAHGAP  250 (255)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHcCCC
Confidence            99999998875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.1e-31  Score=251.89  Aligned_cols=220  Identities=20%  Similarity=0.295  Sum_probs=197.8

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCccc--ccccccCCChHHHHHHHcCCH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFV--ATLLNQERQSAFLLACRRGHV   78 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~   78 (539)
                      ||.||+.|+.+.|+.|++..+..++.+|.+|.||||+|+..|+.+++++|++.++++  ....+..|.+|+++|+..+..
T Consensus         4 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~   83 (229)
T d1ixva_           4 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL   83 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccc
Confidence            799999999999999999988889999999999999999999999999999998765  345678899999999999999


Q ss_pred             HHHHHHHhCCcccc-cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCC
Q 040043           79 NVVKLMLNQSWLME-FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKP  157 (539)
Q Consensus        79 eiv~~Ll~~~~~~~-~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~  157 (539)
                      ++++.++..+.... ...+..+.++++.++..++.++++.|++.+... ...|..|+||||+|+..|+.++++.|++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  162 (229)
T d1ixva_          84 EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGK  162 (229)
T ss_dssp             HHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhccccccccccccccc
Confidence            99999998876543 246678899999999999999999999988776 7789999999999999999999999999986


Q ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhc
Q 040043          158 DMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESF  224 (539)
Q Consensus       158 ~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~  224 (539)
                      ......|.+|+||||+|+..|+.++++.|++..+.+++.+|.+|+||||+|+.   .+++++|++.+
T Consensus       163 ~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g  226 (229)
T d1ixva_         163 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNV  226 (229)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHC
T ss_pred             ccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcC
Confidence            54444599999999999999999999999987667789999999999999984   57899999874

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=3.7e-32  Score=262.44  Aligned_cols=252  Identities=16%  Similarity=0.182  Sum_probs=133.8

Q ss_pred             CHHHHHHH-cCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHH--------hCCcccccccCCCCCcHH
Q 040043           33 TPLHEACR-QGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLML--------NQSWLMEFEEDRDESTPL  103 (539)
Q Consensus        33 TpLh~Aa~-~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll--------~~~~~~~~~~~~~g~t~L  103 (539)
                      ||||+|+. .|+.++++.|.+.+.+..  .+..|+||||+||..|+.++++.|+        +.|++++ ..|.+|.|||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~--~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn-~~d~~G~TpL   78 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNII--DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AMDCDENTPL   78 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTC--CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-CCCTTSCCHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcC--CCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcc-ccCCCCCeee
Confidence            55554433 344444444444443331  1234556666666666555554443        3344444 3455666666


Q ss_pred             HHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcc--ccccccCCCCHHHHHHHcCCHH
Q 040043          104 HVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDM--ALQYNNNGYTPLHQAAINGHVK  181 (539)
Q Consensus       104 h~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~Aa~~g~~~  181 (539)
                      |+|+..|+.+++++|+++++++ +..|.+|.|||++|+..++.++++.+...+...  ....+..+.++.+.+...+..+
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD  157 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT
T ss_pred             cccccccccccccccccccccc-ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccc
Confidence            6666666666666666655554 455556666666666666666665555443211  1112445556666655554322


Q ss_pred             ---HHHHHHHhCCC-------ccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHH
Q 040043          182 ---ILEAFIASSPT-------SFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQ  251 (539)
Q Consensus       182 ---~v~~Ll~~~~~-------~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~  251 (539)
                         .+..+......       ..+..+..|.|+||.++..++.+++++++...  +...+.+|..|+||||+|+..|+.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~--~~~~~~~d~~g~tpL~~A~~~g~~~  235 (277)
T d2fo1e1         158 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK--GSNKDKQDEDGKTPIMLAAQEGRIE  235 (277)
T ss_dssp             HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS--CCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             ccccccccccccccccccccccccccccCCCCccccccccccccccccccccc--cccccccCCCCCCHHHHHHHcCCHH
Confidence               22222222111       12233445666666666666666666544432  2245556666666666666666666


Q ss_pred             HHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHh
Q 040043          252 LAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSEL  291 (539)
Q Consensus       252 iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l  291 (539)
                      ++++|++ .|+|+|.+|..|+||||+|++.|+.++++.++
T Consensus       236 iv~~Ll~-~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~  274 (277)
T d2fo1e1         236 VVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFD  274 (277)
T ss_dssp             HHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHH-CcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            6666664 36666666666666666666666666665554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=1.7e-32  Score=264.75  Aligned_cols=245  Identities=18%  Similarity=0.212  Sum_probs=203.3

Q ss_pred             cCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHH--------hcCcccccccccCCChHHHHHHHcCCH
Q 040043            7 FGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLL--------KTNLFVATLLNQERQSAFLLACRRGHV   78 (539)
Q Consensus         7 ~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll--------~~~~~~~~~~~~~g~tpL~~A~~~g~~   78 (539)
                      .|+.++++.|.+.+.+..  .+.+|+||||+||..|+.++++.|+        +.|+++ +.+|.+|+||||+|+..|+.
T Consensus        11 ~~~~~~~~~l~~~~~n~~--~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~~G~TpLh~A~~~g~~   87 (277)
T d2fo1e1          11 AGSYAITEPITRESVNII--DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRR   87 (277)
T ss_dssp             HSSSCCCSCCSTTTTTTC--CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             CCCHHHHHHHHhcCCCcC--CCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCCCCCeeeccccccccc
Confidence            577777777777665521  2246999999999999999988774        556776 56899999999999999999


Q ss_pred             HHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC--ccccccCCCCChHHhHHHHcCCHH---HHHHHH
Q 040043           79 NVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRP--SFCEQADKNRCLPLHYASRIGNVE---ITKLLL  153 (539)
Q Consensus        79 eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~--~~~~~~d~~g~tpLh~A~~~g~~~---~v~~Ll  153 (539)
                      +++++|+++|++++ ..+.+|.|||+.|+..++.++...+.....  ...+..+..+.++.+.+...+..+   .+..+.
T Consensus        88 ~iv~~Ll~~Gad~n-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (277)
T d2fo1e1          88 RLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV  166 (277)
T ss_dssp             HHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHH
T ss_pred             cccccccccccccc-cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccc
Confidence            99999999999877 578899999999999999999998876532  223556788999999999877643   444444


Q ss_pred             cCCCcc-------ccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhccc
Q 040043          154 NSKPDM-------ALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDF  226 (539)
Q Consensus       154 ~~~~~~-------~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~  226 (539)
                      +.....       ....+..|.||||.++..++.++++.++...+...+..|..|+||||+|+..|+.+++++|++.   
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~---  243 (277)
T d2fo1e1         167 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ---  243 (277)
T ss_dssp             HHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---
T ss_pred             cccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHC---
Confidence            332211       1123667999999999999999999999888888899999999999999999999999999987   


Q ss_pred             ccccccccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043          227 TGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK  258 (539)
Q Consensus       227 ~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  258 (539)
                      +.++|.+|.+|+||||+|++.|+.+++++|++
T Consensus       244 gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         244 GASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            56789999999999999999999999999984

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=1.4e-31  Score=260.59  Aligned_cols=236  Identities=20%  Similarity=0.221  Sum_probs=196.9

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHc
Q 040043           30 KLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISR  109 (539)
Q Consensus        30 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  109 (539)
                      .+.||||.||..|+.++|++|++.|+++ +..|.+|.||||+|+..|+.+++++|++++.+.. ..+..+.+||+.++..
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~-~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASC  116 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHhcCCceeeeeecccccccc-cccccccccccccccc
Confidence            4569999999999999999999999887 6789999999999999999999999999998765 5677889999999999


Q ss_pred             CCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHh
Q 040043          110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS  189 (539)
Q Consensus       110 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~  189 (539)
                      ++.++++.|++.+... +..|..+.+|+++|+..++.+.++.++.............+..+.        .......+..
T Consensus       117 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~  187 (291)
T d1s70b_         117 GYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM--------LRDARQWLNS  187 (291)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred             cccchhhcccccCccc-ccccccCccccccccccccchhccccccccccccccccccccccc--------cccchhhhcc
Confidence            9999999999988765 778999999999999999999999888653322111011111111        1122233334


Q ss_pred             CCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCcccccc
Q 040043          190 SPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNY  269 (539)
Q Consensus       190 ~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~  269 (539)
                      ........+..|.||||.|+..|+.+++++|++.   +.++|.+|.+|+||||+|+..|+.++|++|++ .|+|++.+|+
T Consensus       188 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~---g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~-~Gadv~~~d~  263 (291)
T d1s70b_         188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA---RYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNK  263 (291)
T ss_dssp             TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT
T ss_pred             cccccccccCCCCChhhHHHHcCChhhhcccccc---eecccccccCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCC
Confidence            4455566788999999999999999999999987   55689999999999999999999999999995 5999999999


Q ss_pred             CCCCHHHHHHH
Q 040043          270 TNQTALDVLKE  280 (539)
Q Consensus       270 ~g~t~l~~a~~  280 (539)
                      .|+||||+|.+
T Consensus       264 ~G~TaL~~A~e  274 (291)
T d1s70b_         264 VGQTAFDVADE  274 (291)
T ss_dssp             TSCCTTTSCCS
T ss_pred             CCCCHHHHHHH
Confidence            99999999954

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=1.5e-30  Score=253.18  Aligned_cols=238  Identities=21%  Similarity=0.251  Sum_probs=187.3

Q ss_pred             CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043            1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV   80 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei   80 (539)
                      ||.||+.|+.++|++||+.|.+ ++.+|..|.||||+|+..|+.+++++|++.+.+. ...+..+.+||+.|+..++.++
T Consensus        44 l~~A~~~G~~~~v~~Ll~~Gad-vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~  121 (291)
T d1s70b_          44 FLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDI  121 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccccccccch
Confidence            5789999999999999999988 7899999999999999999999999999999876 5678889999999999999999


Q ss_pred             HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccc
Q 040043           81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA  160 (539)
Q Consensus        81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  160 (539)
                      ++.|++++.... ..+..+.+++++|+..++.+.+..++.............+..+.+       ......+.....+..
T Consensus       122 ~~~l~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  193 (291)
T d1s70b_         122 AEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML-------RDARQWLNSGHINDV  193 (291)
T ss_dssp             HHHHHHTTCCTT-CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-------HHHHHHHHHTCCCCC
T ss_pred             hhcccccCcccc-cccccCccccccccccccchhcccccccccccccccccccccccc-------ccchhhhcccccccc
Confidence            999999987765 578899999999999999999999987544332221111111111       122223333333322


Q ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcH
Q 040043          161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTV  240 (539)
Q Consensus       161 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~  240 (539)
                       ..+..|.||||.|+..|+.++++.|++.+. +++..+.+|+||||+|+..|+.+++++|++.   +.+++.+|.+|+||
T Consensus       194 -~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~-din~~~~~g~TpL~~A~~~g~~~iv~lLl~~---Gadv~~~d~~G~Ta  268 (291)
T d1s70b_         194 -RHAKSGGTALHVAAAKGYTEVLKLLIQARY-DVNIKDYDGWTPLHAAAHWGKEEACRILVEN---LCDMEAVNKVGQTA  268 (291)
T ss_dssp             -CCTTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCT
T ss_pred             -cccCCCCChhhHHHHcCChhhhccccccee-cccccccCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCH
Confidence             237788888888888888888888887664 4677888888888888888888888888876   55678888888899


Q ss_pred             HHHHHHcCCHHHHHHHh
Q 040043          241 LHLAILRNNYQLAEYII  257 (539)
Q Consensus       241 Lh~A~~~~~~~iv~~Ll  257 (539)
                      ||+|++    +++++|.
T Consensus       269 L~~A~e----~~~~~L~  281 (291)
T d1s70b_         269 FDVADE----DILGYLE  281 (291)
T ss_dssp             TTSCCS----GGGHHHH
T ss_pred             HHHHHH----HHHHHHH
Confidence            988875    3454444

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.2e-29  Score=229.91  Aligned_cols=219  Identities=22%  Similarity=0.222  Sum_probs=133.7

Q ss_pred             cCCCCHHHHHHHcCCHHHHHHHHh----cCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHH
Q 040043           29 EKLETPLHEACRQGNAEISALLLK----TNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLH  104 (539)
Q Consensus        29 ~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh  104 (539)
                      ++|+||||+||..|+.++++.|++    .|.++ +..|.+|+||||+|+..|+.+++++|+++++..+ ..+..|.++++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-~~~~~~~~~~~   78 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAAH   78 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhccccccccccccccccccc-ccccccccccc
Confidence            368999999999999998888875    55555 5677888888888888888888888888877665 45667778888


Q ss_pred             HHHHcCCHHHHHHHHhcCCcc---ccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHH
Q 040043          105 VAISRGKIDIVKEILKVRPSF---CEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVK  181 (539)
Q Consensus       105 ~A~~~g~~~~v~~LL~~~~~~---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~  181 (539)
                      .|...++.++++.+.......   .+.......++|+.+.........+.|.....+.....+..+.+|++.|+..+..+
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  158 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  158 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhh
Confidence            888888887777766543322   12233445556666666555555555555555444444455555555555555555


Q ss_pred             HHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHH
Q 040043          182 ILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLA  253 (539)
Q Consensus       182 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv  253 (539)
                      +++.+++.+. ..+..|..|.||||+|+.+|+.+++++|++.   +.+++.+|.+|+||||+|++.++.++|
T Consensus       159 ~~~~~~~~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---Gad~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         159 MVQLLLQHGA-NVNAQMYSGSSALHSASGRGLLPLVRTLVRS---GADSSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             HHHHHHHTTC-CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             hhhhhhhhcc-ccccccccCcchHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHhCCCcccc
Confidence            5555554432 2344444444444444444444444444443   233444444444444444444444433

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.8e-28  Score=224.99  Aligned_cols=219  Identities=18%  Similarity=0.199  Sum_probs=192.0

Q ss_pred             cCCChHHHHHHHcCCHHHHHHHHh----CCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHh
Q 040043           63 QERQSAFLLACRRGHVNVVKLMLN----QSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLH  138 (539)
Q Consensus        63 ~~g~tpL~~A~~~g~~eiv~~Ll~----~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh  138 (539)
                      .+|+||||+||..|+.++++.|++    .+.+++ ..|.+|.||||+|+..|+.++++.|++.+... +..+..|.++++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in-~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~   78 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAH   78 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-ccCCCCCccceehhcccccccccccccccccc-cccccccccccc
Confidence            369999999999999999999885    666666 67899999999999999999999999988876 778889999999


Q ss_pred             HHHHcCCHHHHHHHHcCCCcc---ccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChh
Q 040043          139 YASRIGNVEITKLLLNSKPDM---ALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYN  215 (539)
Q Consensus       139 ~A~~~g~~~~v~~Ll~~~~~~---~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~  215 (539)
                      .|...++.++++.+.......   .........+|++.+...........+...........+..+.++|+.|+..+...
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  158 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  158 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhh
Confidence            999999999998876654332   22235567899999999999999999998887777777889999999999999999


Q ss_pred             HHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhh
Q 040043          216 AFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAF  287 (539)
Q Consensus       216 ~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~  287 (539)
                      +++.+++.   +...+.+|..|+||||+|+..|+.+++++|+++ |+|+|.+|.+|+|||++|++.|+.+++
T Consensus       159 ~~~~~~~~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-Gad~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         159 MVQLLLQH---GANVNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             HHHHHHHT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             hhhhhhhh---ccccccccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHhCCCcccc
Confidence            99999886   456788999999999999999999999999955 999999999999999999888766654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=1.1e-27  Score=220.86  Aligned_cols=207  Identities=19%  Similarity=0.222  Sum_probs=134.9

Q ss_pred             HHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCc
Q 040043           10 IELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSW   89 (539)
Q Consensus        10 ~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~   89 (539)
                      .|+|+.|++.|+++....|.+|+||||+||..|+.+++++|++.++++ +..+..+.++++.++..++.+..........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccccc
Confidence            467777887777732335777788888888888888888777777766 5567777777777777777766666665554


Q ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCC
Q 040043           90 LMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYT  169 (539)
Q Consensus        90 ~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  169 (539)
                      .........|.++.+.+.........+.|...+.++ +..+..|.|||++++..+..++++.+++.+.+++.. |.+|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~-d~~g~T  158 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ-DDKDET  158 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccccccccc-cccccc
Confidence            444344555666666666666666666666655554 555666666666666666666666666666666554 666666


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHH
Q 040043          170 PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL  220 (539)
Q Consensus       170 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~L  220 (539)
                      |||.|+..|+.++++.|++.+++ ++..|..|+||||+|+++|+.+++++|
T Consensus       159 pL~~A~~~g~~~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         159 PLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccchhccccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            66666666666666666665543 455555555555555555555555543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=9.3e-28  Score=221.40  Aligned_cols=207  Identities=19%  Similarity=0.265  Sum_probs=178.2

Q ss_pred             HHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 040043           44 AEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRP  123 (539)
Q Consensus        44 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~  123 (539)
                      .|+|++|+++|+++....|.+|.||||+||..|+.+++++|++.++.++ ..+..+.++++.++..++............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADAN-SQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccc-cccccccccccccccccccccccccccccc
Confidence            4899999999998855578999999999999999999999999998877 578888999999999999888877777766


Q ss_pred             ccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCc
Q 040043          124 SFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDT  203 (539)
Q Consensus       124 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  203 (539)
                      ......+..|.++.+.+.........+.|...+.++... +..|.|||+.++..+..++++.++..+.+ ++..|.+|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~T  158 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA-DNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDET  158 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhccccccc-CCCCCCcchhhcccCcceeeeeecccccc-cccccccccc
Confidence            666667777889999999999999999999998888776 88899999999999999999888887644 6788888999


Q ss_pred             HHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHH
Q 040043          204 VFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI  256 (539)
Q Consensus       204 ~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L  256 (539)
                      |||+|+.+|+.+++++|++.   +.+++.+|.+|+||||+|++.|+.++|++|
T Consensus       159 pL~~A~~~g~~~~v~~Ll~~---gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         159 PLFLAAREGSYEASKALLDN---FANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccchhccccHHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999988886   456788888899999999999999888875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-28  Score=229.98  Aligned_cols=192  Identities=21%  Similarity=0.205  Sum_probs=151.4

Q ss_pred             CCCCHHHHHHHcCCHHHHH----HHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHH
Q 040043           30 KLETPLHEACRQGNAEISA----LLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHV  105 (539)
Q Consensus        30 ~g~TpLh~Aa~~g~~~iv~----~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~  105 (539)
                      +|+||||+|+..|+.++++    .+...+.++ +..|.+|+||||+|+..|+.+++++|+++++++. ..|..|.||||.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~-~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCcccccccccccccccccccccccccc-cccccccccccc
Confidence            5899999999999865544    444556555 6788899999999999999999999999998876 578889999999


Q ss_pred             HHHcCCHHHHHHHHhcCCc-----cccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCH
Q 040043          106 AISRGKIDIVKEILKVRPS-----FCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHV  180 (539)
Q Consensus       106 A~~~g~~~~v~~LL~~~~~-----~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~  180 (539)
                      ++..|+.++++.|++.+..     ........|.||||.|+..++.+++++|+..++..+...+.+|.||||.|++.|+.
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~  158 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP  158 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccH
Confidence            9999999999999876433     22334556788888888888888888888888887776567788888888888888


Q ss_pred             HHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhc
Q 040043          181 KILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESF  224 (539)
Q Consensus       181 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~  224 (539)
                      +++++|++.+.+ ++.+|.+|+||||+|+..++.+++++|++..
T Consensus       159 ~~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         159 DLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             HHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             HHHHHHHhcCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            888888876644 7777888888888888888888888777753

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.7e-28  Score=225.87  Aligned_cols=190  Identities=22%  Similarity=0.243  Sum_probs=168.6

Q ss_pred             CceecccCcHHHHHHHHH----hCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcC
Q 040043            1 IKAATGFGHIELVTEIIK----LCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRG   76 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~Ll~----~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g   76 (539)
                      ||+|+..|+.++++.|++    .+.. ++.+|..|+||||+||..|+.+++++|++.|+++ +..|..|.|||+.|+..|
T Consensus         6 Lh~A~~~g~~~~~~~li~~~~~~~~~-in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~   83 (221)
T d1iknd_           6 LHLAIIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQG   83 (221)
T ss_dssp             THHHHHTTCSSSSSCCCC-----CCC-CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCC-cccCCCCCCccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            799999999766666554    4444 7889999999999999999999999999999987 678999999999999999


Q ss_pred             CHHHHHHHHhCCcccc-----cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHH
Q 040043           77 HVNVVKLMLNQSWLME-----FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKL  151 (539)
Q Consensus        77 ~~eiv~~Ll~~~~~~~-----~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~  151 (539)
                      +.++++.|++.+....     ......|.||||.|+..++.+++..++..+.......+.+|+||||+|+..|+.+++++
T Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~  163 (221)
T d1iknd_          84 CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL  163 (221)
T ss_dssp             CHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             cccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHH
Confidence            9999999998764432     23456789999999999999999999999998866777889999999999999999999


Q ss_pred             HHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Q 040043          152 LLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTS  193 (539)
Q Consensus       152 Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~  193 (539)
                      |+++|++++.. |.+|+||||+|+..++.++++.|++...+.
T Consensus       164 Ll~~gad~~~~-~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         164 LLKCGADVNRV-TYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             HHTTTCCSCCC-CTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             HHhcCCccccc-CCCCCCHHHHHHHCCCHHHHHHHHHcCCcc
Confidence            99999998876 999999999999999999999999876553

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=1.1e-29  Score=253.48  Aligned_cols=255  Identities=16%  Similarity=0.134  Sum_probs=183.9

Q ss_pred             ecccCcHHHHHHHHHhCC----------hhhhccccCCCCHHHHHHHcCCHHHHHH---HHhcCcccccccccCCChHHH
Q 040043            4 ATGFGHIELVTEIIKLCP----------QLVAAVNEKLETPLHEACRQGNAEISAL---LLKTNLFVATLLNQERQSAFL   70 (539)
Q Consensus         4 Aa~~g~~e~v~~Ll~~~~----------~~l~~~n~~g~TpLh~Aa~~g~~~iv~~---Ll~~~~~~~~~~~~~g~tpL~   70 (539)
                      +...+..++++.+.....          ..+..++..|.||||+||..|+.+++++   |++.++++ +..|.+|.||||
T Consensus        53 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~  131 (346)
T d2ajaa1          53 PGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFR  131 (346)
T ss_dssp             CCSSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHH
T ss_pred             HhhccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHH
Confidence            334445556665544321          1356778899999999999999887766   67888877 668899999999


Q ss_pred             HHHHcCCHHHHHHHHhCCcccccc-cCCCCCcHHHHHHHcCCHHHHHHHHhcCCccc--cccCCCCChHHhHHHHcCCHH
Q 040043           71 LACRRGHVNVVKLMLNQSWLMEFE-EDRDESTPLHVAISRGKIDIVKEILKVRPSFC--EQADKNRCLPLHYASRIGNVE  147 (539)
Q Consensus        71 ~A~~~g~~eiv~~Ll~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~--~~~d~~g~tpLh~A~~~g~~~  147 (539)
                      +||.+|+.++|++|++++++.+.. .+.+|.||||+|+..|+.+++++|++.++...  +..+.++.||+|.|+.+|+.+
T Consensus       132 ~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~  211 (346)
T d2ajaa1         132 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN  211 (346)
T ss_dssp             HHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred             HHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHH
Confidence            999999999999999999877632 23568999999999999999999999887652  344566788899999999999


Q ss_pred             HHHHHHcCCCccccc------cccCCCCHHHHHHHcCCHHHHHHHHHhCCCc-cccccC-------CCCcHHHHHHHhCC
Q 040043          148 ITKLLLNSKPDMALQ------YNNNGYTPLHQAAINGHVKILEAFIASSPTS-FNCLTT-------DGDTVFHLALRFGK  213 (539)
Q Consensus       148 ~v~~Ll~~~~~~~~~------~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~-~~~~d~-------~g~t~Lh~Av~~~~  213 (539)
                      ++++|++.|++....      ....+.++++.+...+..+....+....+.. .+..+.       .+.++++.|+..++
T Consensus       212 iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~  291 (346)
T d2ajaa1         212 VINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVL  291 (346)
T ss_dssp             HHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCCh
Confidence            999999998876532      1223345666666555555444333322221 111111       23467888888889


Q ss_pred             hhHHHHHHhhccccc--ccccccCCCCcHHHHHHHcCCHHHHHHHhhc
Q 040043          214 YNAFIFLAESFDFTG--LLHQQDQFGNTVLHLAILRNNYQLAEYIIKK  259 (539)
Q Consensus       214 ~~~v~~Ll~~~~~~~--~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  259 (539)
                      .+++++|++......  ..+..+.+|+||||+|++.|+.++|++||+-
T Consensus       292 ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         292 LDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            999999988654332  2344566899999999999999999999853

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.5e-25  Score=191.34  Aligned_cols=153  Identities=22%  Similarity=0.307  Sum_probs=87.3

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCH
Q 040043           33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKI  112 (539)
Q Consensus        33 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~  112 (539)
                      +|||+||..|+.++|+.|++.|+++ +.+|.+|.||||+|+ .|+.+++++|++++++++ ..+..|.++++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~-~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD-LKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-cccccccccccccccccc-cccccCccccccccccccc
Confidence            5666666666666666666666654 455666666666554 456666666666655544 3455555666666666666


Q ss_pred             HHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHh
Q 040043          113 DIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS  189 (539)
Q Consensus       113 ~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~  189 (539)
                      +.+..+++.+... +..|..|.+|||+|+..++.++++.|+++++.....+|.+|.||||+|++.|+.+++++|+++
T Consensus        80 ~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          80 DTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            6665555555544 444555555555555555555555555555432222355555555555555555555555543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.5e-24  Score=187.66  Aligned_cols=153  Identities=22%  Similarity=0.379  Sum_probs=93.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCH
Q 040043           67 SAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV  146 (539)
Q Consensus        67 tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~  146 (539)
                      +|||+||..|+.++|++|+++|.+++ ..|.+|.||||+|+ .|+.++++.|++.+++. +..+..|.+|++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n-~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccccc
Confidence            56666666666666666666666654 45666666666554 45666666666666554 55566666666666666666


Q ss_pred             HHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhh
Q 040043          147 EITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES  223 (539)
Q Consensus       147 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~  223 (539)
                      +.++.|++.+.+.... +..|.+|+|.|+..++.++++.|+++++.+.+.+|.+|+||||+|+..++.+++++|++.
T Consensus        80 ~~~~~l~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          80 DTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            6666666666555544 556666666666666666666666665555555555555555555555555555555543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.2e-24  Score=187.29  Aligned_cols=150  Identities=24%  Similarity=0.337  Sum_probs=121.6

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCC
Q 040043           32 ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGK  111 (539)
Q Consensus        32 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~  111 (539)
                      .||||.||+.|+.++|+.|++.|++..  .|..|.||||+|+..++.++++.++....... ..+..+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCcccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            388888888888888888888887653  57888888888888888888888887766554 456667788888888888


Q ss_pred             HHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHH
Q 040043          112 IDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF  186 (539)
Q Consensus       112 ~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~L  186 (539)
                      .++++.+++.+.+. +..|.+|+||||+|+..|+.+++++|++.|++++.. |.+|.||||+|+.+|+.++++.|
T Consensus        80 ~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~-d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccCCccc-CCCCCCHHHHHHHcCCHHHHHhC
Confidence            88888888877765 667888888888888888888888888888888765 88888888888888888888643

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-24  Score=190.83  Aligned_cols=152  Identities=22%  Similarity=0.341  Sum_probs=123.5

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCH
Q 040043           33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKI  112 (539)
Q Consensus        33 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~  112 (539)
                      +.||.||..|+.++|+.|++.+....+..|..|+||||+|+ .|+.+++++|++++.+++ ..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~-~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN-VQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccc-ccccccccccccccccccc
Confidence            34888888888888888887755445777888888888876 477888888888887766 4667788888888888888


Q ss_pred             HHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHh
Q 040043          113 DIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS  189 (539)
Q Consensus       113 ~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~  189 (539)
                      ++++.+++.++++ +..|..|+||||+|+..|+.+++++|+ .+++++.. |.+|+||||+|++.|+.++++.|+++
T Consensus        82 ~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~-d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRR-DARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCC-CTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccc-ccccCCCCeeecccccccccccccccc-cccccccc-CCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            8888888888776 667888888888888888888888777 56777665 88888888888888888888888764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.9e-24  Score=188.43  Aligned_cols=152  Identities=26%  Similarity=0.342  Sum_probs=95.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCH
Q 040043           67 SAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV  146 (539)
Q Consensus        67 tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~  146 (539)
                      ++|+.||..|+.++|+.|++.+.......|..|.||||+|+. |+.+++++|++.+.++ +..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-cccccccccccccccc-cccccccccccccccccccc
Confidence            346666666666666666654322222456666666666653 5666666666666654 55566666666666666666


Q ss_pred             HHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhh
Q 040043          147 EITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES  223 (539)
Q Consensus       147 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~  223 (539)
                      ++++.+++.+++++.. |.+|.||||+|++.|+.+++++|+. + .+++..|.+|+||||+|+.+|+.+++++|+++
T Consensus        82 ~~~~~~l~~~~~~n~~-~~~~~t~L~~A~~~~~~~i~~~L~~-~-~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCSCCC-CTTSCCHHHHHHHHTCHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccc-cCCCCeeeccccccccccccccccc-c-ccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            6666666666666554 6666666666666666666665552 2 33566666666666666666666666666654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=8.3e-27  Score=232.34  Aligned_cols=222  Identities=14%  Similarity=0.112  Sum_probs=166.9

Q ss_pred             CceecccCcHHHHHH---HHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccc-cccCCChHHHHHHHcC
Q 040043            1 IKAATGFGHIELVTE---IIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATL-LNQERQSAFLLACRRG   76 (539)
Q Consensus         1 Lh~Aa~~g~~e~v~~---Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-~~~~g~tpL~~A~~~g   76 (539)
                      ||+||+.||.++++.   |++.+.+ ++.+|..|.||||+||+.|+.++|++|++.|+++... .+.+|.||||+|+..|
T Consensus        94 L~~Aa~~g~~~~~~~~~~L~~~~~~-in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g  172 (346)
T d2ajaa1          94 CFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENG  172 (346)
T ss_dssp             HHHHHHHCCHHHHHHHTTC--CCSS-CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCHHHHHHHHHHHhCCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHh
Confidence            578999999888776   5666665 7889999999999999999999999999999887332 2356999999999999


Q ss_pred             CHHHHHHHHhCCccccc--ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccc------ccCCCCChHHhHHHHcCCHHH
Q 040043           77 HVNVVKLMLNQSWLMEF--EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCE------QADKNRCLPLHYASRIGNVEI  148 (539)
Q Consensus        77 ~~eiv~~Ll~~~~~~~~--~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~------~~d~~g~tpLh~A~~~g~~~~  148 (539)
                      +.++|++|++.++....  ..+.++.||+|.|+.+|+.+++++|++.+++...      .....+.++++.+...+..+.
T Consensus       173 ~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (346)
T d2ajaa1         173 HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEM  252 (346)
T ss_dssp             CHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHH
Confidence            99999999999876531  2345567888999999999999999998765421      123344566776666666665


Q ss_pred             HHHHHcCCCcccc--c------cccCCCCHHHHHHHcCCHHHHHHHHHhCCCc----cccccCCCCcHHHHHHHhCChhH
Q 040043          149 TKLLLNSKPDMAL--Q------YNNNGYTPLHQAAINGHVKILEAFIASSPTS----FNCLTTDGDTVFHLALRFGKYNA  216 (539)
Q Consensus       149 v~~Ll~~~~~~~~--~------~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~----~~~~d~~g~t~Lh~Av~~~~~~~  216 (539)
                      ...+.....+...  .      ....+.++++.|+..|+.+++++|++.....    ....+.+|+||||+|++.|+.++
T Consensus       253 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~  332 (346)
T d2ajaa1         253 HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGA  332 (346)
T ss_dssp             HTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTH
T ss_pred             HHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHH
Confidence            5555444332211  0      0122357899999999999999999866532    23345679999999999999999


Q ss_pred             HHHHHhh
Q 040043          217 FIFLAES  223 (539)
Q Consensus       217 v~~Ll~~  223 (539)
                      +++|++.
T Consensus       333 v~lLL~~  339 (346)
T d2ajaa1         333 CALLLSI  339 (346)
T ss_dssp             HHHHTTS
T ss_pred             HHHHhCC
Confidence            9999875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.8e-25  Score=216.01  Aligned_cols=178  Identities=19%  Similarity=0.150  Sum_probs=107.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCH-------HHHHHHHcCCCccccccccCCC
Q 040043           96 DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV-------EITKLLLNSKPDMALQYNNNGY  168 (539)
Q Consensus        96 ~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~-------~~v~~Ll~~~~~~~~~~d~~g~  168 (539)
                      |.+|.||||+|+..|+.++++.|++.++++ +.+|..|+||||.|+..++.       ++++++..   .... .|..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~-~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLIL-EDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGE-ECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhh-cccccC
Confidence            566666777776666666776666666655 55666666777766654431       33333322   2222 266667


Q ss_pred             CHHHHHHHcCC------------HHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCC
Q 040043          169 TPLHQAAINGH------------VKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQF  236 (539)
Q Consensus       169 tpLh~Aa~~g~------------~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~  236 (539)
                      ||||.++..+.            ..++..+++............+.++++.+........+..+.........+|.+|.+
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~  258 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN  258 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTT
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCC
Confidence            77776664332            123445556655555566667777777776665555544332211123347899999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHH
Q 040043          237 GNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLK  279 (539)
Q Consensus       237 G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~  279 (539)
                      |+||||+|++.|+.++|++|++ .|+|++.+|+.|+||||+|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~-~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHcC
Confidence            9999999999999999999995 59999999999999999874

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=5.2e-23  Score=179.43  Aligned_cols=149  Identities=23%  Similarity=0.329  Sum_probs=97.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCH
Q 040043           67 SAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV  146 (539)
Q Consensus        67 tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~  146 (539)
                      |||+.|++.|+.++|+.|++++++..  .+..|.||||+|+..++.+++..++...... ...+..+.++++.++...+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence            67777777777777777777766544  5666777777777777777776666655554 34455566667777777777


Q ss_pred             HHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHH
Q 040043          147 EITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL  220 (539)
Q Consensus       147 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~L  220 (539)
                      ++++.+...+.+...+ |.+|+||||+|+..|+.++++.|++.+. +++..|.+|.||||+|+.+|+.+++++|
T Consensus        81 ~~~~~l~~~~~~~~~~-~~~g~T~L~~A~~~g~~~iv~~ll~~ga-d~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYGA-DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccCCccccc-cccCchHHHhhhhcchhheeeecccccc-CCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            7777776666666554 6666677777766666666666665543 3555566666666666666666666544

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.7e-23  Score=204.23  Aligned_cols=185  Identities=14%  Similarity=0.085  Sum_probs=126.5

Q ss_pred             CcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCH---HHHHHHHhcCCccccccC
Q 040043           54 NLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKI---DIVKEILKVRPSFCEQAD  130 (539)
Q Consensus        54 ~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~---~~v~~LL~~~~~~~~~~d  130 (539)
                      +.++....|.+|+||||+||..|+.++|++|+++|++++ ..|..|.||||.|+..++.   +.+..+++.........|
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d  174 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  174 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-cCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcc
Confidence            334433448899999999999999999999999999887 6788999999999987652   222333333223346678


Q ss_pred             CCCChHHhHHHHcCC----HH--------HHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHH-----HHHHhCCCc
Q 040043          131 KNRCLPLHYASRIGN----VE--------ITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE-----AFIASSPTS  193 (539)
Q Consensus       131 ~~g~tpLh~A~~~g~----~~--------~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~-----~Ll~~~~~~  193 (539)
                      ..|+||||+++..+.    ..        ++..+++.+..........+.++++.+........+.     .++..   .
T Consensus       175 ~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  251 (301)
T d1sw6a_         175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN---M  251 (301)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH---T
T ss_pred             cccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc---C
Confidence            999999999887554    22        3455566665555544566667776665554433332     22222   2


Q ss_pred             cccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHH
Q 040043          194 FNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAI  245 (539)
Q Consensus       194 ~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~  245 (539)
                      ++.+|.+|+||||+|+++|+.+++++|++.   +++++.+|+.|.||||+|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~---GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDY---GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT---TCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHcC
Confidence            678899999999999999999999999987   6678999999999999986

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.4e-22  Score=166.31  Aligned_cols=121  Identities=19%  Similarity=0.232  Sum_probs=91.2

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCC-CcHHHHHHH
Q 040043           30 KLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDE-STPLHVAIS  108 (539)
Q Consensus        30 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g-~t~Lh~A~~  108 (539)
                      .+.++||.||+.|+.+++++|++.|+++ +..|..|.||||.|+ .|+.+++++|++++.+++. .+..+ .||||.|+.
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC-ADPATLTRPVHDAAR   78 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC-CCTTTCCCHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccccccccccccccccccc-ccccccccccccccc
Confidence            3567888888888888888888888776 567778888888664 6788888888888777763 34443 457888888


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHc
Q 040043          109 RGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLN  154 (539)
Q Consensus       109 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~  154 (539)
                      .|+.++++.|++.+.++ +..|..|+||||+|+..|+.+++++|+.
T Consensus        79 ~g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            88888888888777665 6677778888888888888888877764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.5e-21  Score=161.73  Aligned_cols=117  Identities=19%  Similarity=0.293  Sum_probs=55.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCC-CCHHHHHHHcCC
Q 040043          101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNG-YTPLHQAAINGH  179 (539)
Q Consensus       101 t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~Aa~~g~  179 (539)
                      ++||.|+..|+.+++++|++++.++ +..|..|.||||.|+ .|+.+++++|+++|++++.. +..+ .+|||+|++.|+
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA-DPATLTRPVHDAAREGF   81 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC-CTTTCCCHHHHHHHHTC
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-cccccccccccccccccccc-ccccccccccccccccc
Confidence            4444444444444444444444433 344444555554332 34455555555555544443 3332 235555555555


Q ss_pred             HHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHH
Q 040043          180 VKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA  221 (539)
Q Consensus       180 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll  221 (539)
                      .++++.|++.+. +++..|.+|+||||+|+++|+.+++++|+
T Consensus        82 ~~~v~~Ll~~ga-~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          82 LDTLVVLHRAGA-RLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             HHHHHHHHHHTC-CSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             cccccccccccc-ccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            555555554432 24444555555555555555555555443

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=9.3e-22  Score=163.47  Aligned_cols=105  Identities=15%  Similarity=0.168  Sum_probs=51.9

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCH
Q 040043           33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKI  112 (539)
Q Consensus        33 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~  112 (539)
                      |||++|++.|+.+++++|++.|+++ +..+.+|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din-~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT-CCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccceee-ecccccccchhhhhhcCch
Confidence            4555555555555555555555444 3344555555555555555555555555544443 3344444444444444444


Q ss_pred             HHHHHHHhcCCccccccCCCCChHHhHH
Q 040043          113 DIVKEILKVRPSFCEQADKNRCLPLHYA  140 (539)
Q Consensus       113 ~~v~~LL~~~~~~~~~~d~~g~tpLh~A  140 (539)
                      +++++|++.+.++ +..|.+|.||||+|
T Consensus        82 ~~v~~Ll~~Gad~-~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGADK-TVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCCS-SSSSSSTCCCCCTC
T ss_pred             hhhhhhhcccccc-eeeCCCCCCHHHHH
Confidence            4444444444443 34444444444444

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=1.7e-21  Score=161.79  Aligned_cols=107  Identities=25%  Similarity=0.367  Sum_probs=85.1

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCC
Q 040043           66 QSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGN  145 (539)
Q Consensus        66 ~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~  145 (539)
                      .|||++|++.|+.+++++|+++|.+++ ..+..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n-~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCC-CCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccc-ccccccccccccccccccccccccccccccee-eecccccccchhhhhhcCc
Confidence            478888888888888888888887766 56777888888888888888888888877776 6677788888888888888


Q ss_pred             HHHHHHHHcCCCccccccccCCCCHHHHHH
Q 040043          146 VEITKLLLNSKPDMALQYNNNGYTPLHQAA  175 (539)
Q Consensus       146 ~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa  175 (539)
                      .+++++|+++|++++.. |.+|.||||+|.
T Consensus        81 ~~~v~~Ll~~Gad~~~~-d~~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLSKGADKTVK-GPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHTTCCCSSSS-SSSTCCCCCTCS
T ss_pred             hhhhhhhhcccccceee-CCCCCCHHHHHh
Confidence            88888888888877765 788888887763

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.1e-20  Score=156.91  Aligned_cols=118  Identities=20%  Similarity=0.254  Sum_probs=54.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHH
Q 040043           68 AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVE  147 (539)
Q Consensus        68 pL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~  147 (539)
                      +|+.|+..|+.+++++|+++|.+++ ..|.+|.||||+|+..|+.+++++|++.+.+. +..|.+|+||||+|+..|+.+
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~n-~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcc-cccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHHH
Confidence            3444444444444444444444433 33444444444444444444444444444433 444455555555555555555


Q ss_pred             HHHHHHcCCCccccccccCCCCHHHHH--HHcCCHHHHHHHH
Q 040043          148 ITKLLLNSKPDMALQYNNNGYTPLHQA--AINGHVKILEAFI  187 (539)
Q Consensus       148 ~v~~Ll~~~~~~~~~~d~~g~tpLh~A--a~~g~~~~v~~Ll  187 (539)
                      ++++|+++|++++...+.+|.||++++  +++|+.+++++|+
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~  123 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY  123 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHH
Confidence            555555555554433223344443333  2334444444444

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.5e-20  Score=157.51  Aligned_cols=121  Identities=18%  Similarity=0.215  Sum_probs=96.6

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCH
Q 040043           33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKI  112 (539)
Q Consensus        33 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~  112 (539)
                      ++||.||..|+.++++.|++.|+++ +.+|.+|+||||+|+..|+.+++++|++.+.+.+ ..|.+|.||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~-~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccccccccccccccc-cccccCcccccccchhhHH
Confidence            5688888888888888888888876 6678888888888888888888888888887776 5788888888888888888


Q ss_pred             HHHHHHHhcCCccccccCCCCChHHhHH--HHcCCHHHHHHHHcC
Q 040043          113 DIVKEILKVRPSFCEQADKNRCLPLHYA--SRIGNVEITKLLLNS  155 (539)
Q Consensus       113 ~~v~~LL~~~~~~~~~~d~~g~tpLh~A--~~~g~~~~v~~Ll~~  155 (539)
                      ++++.|+++++++....+..|.||++++  +..|+.+++++|++.
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            8888888888776333334577765554  567888888888764

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=3.1e-19  Score=154.89  Aligned_cols=125  Identities=19%  Similarity=0.223  Sum_probs=89.6

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCccccc-----ccccCCChHHHHHHHc---CCHHHHHHHHhCCcccccccCCCCCcHHH
Q 040043           33 TPLHEACRQGNAEISALLLKTNLFVAT-----LLNQERQSAFLLACRR---GHVNVVKLMLNQSWLMEFEEDRDESTPLH  104 (539)
Q Consensus        33 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~-----~~~~~g~tpL~~A~~~---g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh  104 (539)
                      ..|+.|++.+++..+..++..|.++..     ..+..|+||||+|+..   |+.+++++|+++|.+++ ..|.+|.||||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin-~~d~~g~TpLh   86 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTCCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChh-hhhhhhccccc
Confidence            357777777777777777776654422     1255677777777764   56777777777777765 56777778888


Q ss_pred             HHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcc
Q 040043          105 VAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDM  159 (539)
Q Consensus       105 ~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  159 (539)
                      +|+..|+.++++.|++.++++ +..|.+|.||||+|+..|+.+++++|++.+...
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            888877878888877777766 667777788888888888888888777765443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2.8e-18  Score=148.82  Aligned_cols=124  Identities=20%  Similarity=0.249  Sum_probs=88.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCccccc-----ccCCCCCcHHHHHHHc---CCHHHHHHHHhcCCccccccCCCCChHHh
Q 040043           67 SAFLLACRRGHVNVVKLMLNQSWLMEF-----EEDRDESTPLHVAISR---GKIDIVKEILKVRPSFCEQADKNRCLPLH  138 (539)
Q Consensus        67 tpL~~A~~~g~~eiv~~Ll~~~~~~~~-----~~~~~g~t~Lh~A~~~---g~~~~v~~LL~~~~~~~~~~d~~g~tpLh  138 (539)
                      ..|+.|++.++...+..++..+.+...     ..+..|.||||+|+..   |+.+++++|++.+.++ +.+|..|+||||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh   86 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhccccc
Confidence            345677788888888888777655431     1255677777777763   5667777777777765 667777777777


Q ss_pred             HHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q 040043          139 YASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPT  192 (539)
Q Consensus       139 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  192 (539)
                      +|+..|+.+++++|+++|++++.. |.+|.||||+|++.|+.++++.|++....
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~~~-d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIEIA-NESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccccccccccccccccCcccccc-CCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            777777777777777777777665 77777777777777777777777765543