Citrus Sinensis ID: 040046

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKKLSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQHYELVDNEGHYDSVIRFQNGGPGIFALRLQPNEPLSSQWMSIHE
Secondary Structure (PSIPRED)
ccccccHHHHcccccccccccccccccccccHHHHHHcccccEEEEEEcccccEEccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHccccccccEEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKKLSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFiinakeedqhyelvdneghydsvirfqnggpgifalrlqpneplssqwmsihe
Flexible Loop (DISEMBL)
margkiqikrienatnrqvtfskrrnglfkkaqELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGEslndlslkklsdleqDVDNCLRIIRerklraisgqivthrkkvrreeeenrklrngfiinakeedQHYELVDNEGHYDSVIRFQNGGPGIFALrlqpneplssqwmsihe
Low Complexity Region (SEG)
MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGEslndlslkklsdlEQDVDNCLRIIRERKLRAISGQIVTHrkkvrreeeenrkLRNGFIINAKEEDQHYELVDNEGHYDSVIRFQNGGPGIFALRLQPNEPLSSQWMSIHE
Disordered region (IsUnstruct)
*******************TFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIR*********LSLKKLSDLEQDVDNCLRIIRERKLRAISGQIV*******************FIINAKEEDQHYELVDNEGHYDSVIRFQNGGPGIFALRL***************
Disordered Region (DISOPRED)
MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLKI*L********QENLKNLKEVNINLKKEIRQRLGESLNDLSLKKLSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFI*********************************ALRLQ**************
Disordered Region (DISEMBL)
MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGK**********TKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKKLSDLEQDVDNCLRIIRERKLRAISGQIV************NRKLRNGFIINAKEEDQHYELVDNEGHYDSVIRFQNGGPGIFALRLQPNEPLS********
Disordered Region (DISPRO)
****KIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKKLSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQHYELVDNEGHYDSVIRFQNGGPGIFALRLQPNEPLSSQ******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLKxxxxxxxxxxxxxxxxxxxxxxxxxxxxIRQRLGESLNDLSLKKLSDLEQDVDNCLRIIRERKLRAISGQxxxxxxxxxxxxxxxxxxxxxFIINAKEEDQHYELVDNEGHYDSVIRFQNGGPGIFALRLQPNEPLSSQWMSIHE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
P23706	227	Floral homeotic protein D	N/A	no	0.941	0.916	0.652	3e-72
Q07472	231	Floral homeotic protein P	N/A	no	0.918	0.878	0.655	9e-68
P35632	232	Floral homeotic protein A	yes	no	0.936	0.892	0.531	5e-57
Q944S9	224	MADS-box transcription fa	yes	no	0.941	0.928	0.478	1e-47
Q42498	214	MADS-box protein CMB2 OS=	N/A	no	0.923	0.953	0.421	3e-39
Q03378	215	Floral homeotic protein G	N/A	no	0.927	0.953	0.362	6e-32
Q07474	212	Floral homeotic protein P	N/A	no	0.873	0.910	0.388	2e-31
Q03416	209	Floral homeotic protein G	N/A	no	0.868	0.918	0.391	1e-29
P48007	208	Floral homeotic protein P	no	no	0.923	0.980	0.363	1e-29
Q40702	209	MADS-box transcription fa	no	no	0.918	0.971	0.360	6e-28

>sp|P23706|DEFA_ANTMA Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1

 Score =  271 bits (692), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 137/210 (65%), Positives = 166/210 (79%), Gaps = 2/210 (0%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           MARGKIQIKRIEN TNRQVT+SKRRNGLFKKA EL+VLCDAKVSIIM SST K+ EY+S 
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           +T TKQL D+YQ+ + +DLWSS YEKMQE+LK L EVN NL++EIRQR+GESLNDL  ++
Sbjct: 61  TTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQ 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQHYE 180
           + +L +D+DN L++IRERK + IS QI T +KKVR  EE +R L   F  +A+ ED H+ 
Sbjct: 121 IVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEF--DARREDPHFG 178

Query: 181 LVDNEGHYDSVIRFQNGGPGIFALRLQPNE 210
           LVDNEG Y+SV+ F NGGP I ALRL  N 
Sbjct: 179 LVDNEGDYNSVLGFPNGGPRIIALRLPTNH 208

Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Antirrhinum majus (taxid: 4151)

>sp|Q07472|MADS1_PETHY Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1

 Score =  256 bits (654), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 135/206 (65%), Positives = 163/206 (79%), Gaps = 3/206 (1%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           MARGKIQIKRIEN TNRQVT+SKRRNGLFKKA ELTVLCDAKVSIIM SSTGK+ E++S 
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           S TTKQL D YQ+ + +DLW+S YEKMQE L+ LKEVN NL+KEIRQR+GESLNDL+ ++
Sbjct: 61  SITTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQ 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQHYE 180
           L +L ++VDN L++IRERK + I  QI T +KKVR  EE +R L   F  +A++ED  Y 
Sbjct: 121 LEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNLLLEF--DARQEDP-YG 177

Query: 181 LVDNEGHYDSVIRFQNGGPGIFALRL 206
           LV+ EG Y+SV+ F NGG  I ALRL
Sbjct: 178 LVEQEGDYNSVLGFPNGGHRILALRL 203

Transcription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals.

Petunia hybrida (taxid: 4102)

>sp|P35632|AP3_ARATH Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1

 Score =  220 bits (561), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 111/209 (53%), Positives = 154/209 (73%), Gaps = 2/209 (0%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           MARGKIQIKRIEN TNRQVT+SKRRNGLFKKA ELTVLCDA+VSIIM SS+ K+ EY+S 
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           +TTTK+++D YQ    +D+W++QYE+MQE  + L E N NL+ +I+QRLGE L++L +++
Sbjct: 61  NTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQE 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQHYE 180
           L  LE +++N  +++RERK +++  QI T +KK + +++  + L +   + A  ED HY 
Sbjct: 121 LRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRA--EDPHYG 178

Query: 181 LVDNEGHYDSVIRFQNGGPGIFALRLQPN 209
           LVDN G YDSV+ +Q  G   +ALR   N
Sbjct: 179 LVDNGGDYDSVLGYQIEGSRAYALRFHQN 207

Probable transcription factor involved in the genetic control of flower development. Is required for normal development of petals and stamens in the wild-type flower. Forms an heterodimer with PISTILLATA that is required for autoregulation of both AP3 and PI genes. AP3/PI heterodimer interacts with APETALA1 or SEPALLATA3 to form a ternary complex that could be responsible for the regulation of the genes involved in the flower development. AP3/PI heterodimer activates the expression of NAP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q944S9|MAD16_ORYSJ MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2

 Score =  189 bits (481), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/211 (47%), Positives = 133/211 (63%), Gaps = 3/211 (1%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           M RGKI+IKRIENATNRQVT+SKRR G+ KKA+ELTVLCDA+V+IIM SSTGK  E+ S 
Sbjct: 1   MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           ST  K + D YQ+ +   LW  QYE MQ  L +LK++N NL+ EIRQR+GE L+ L   +
Sbjct: 61  STDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDE 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQHYE 180
           L  LEQ+VD  L+ +R RK   I+ Q  T++KKV+   E    L+    +    E+  + 
Sbjct: 121 LRGLEQNVDAALKEVRHRKYHVITTQTETYKKKVKHSYEAYETLQQELGL---REEPAFG 177

Query: 181 LVDNEGHYDSVIRFQNGGPGIFALRLQPNEP 211
            VDN G              +FA R+ P++P
Sbjct: 178 FVDNTGGGWDGGAGAGAAADMFAFRVVPSQP 208

Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as an heterodimer with MADS4.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q42498|CMB2_DIACA MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1

 Score =  161 bits (408), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 91/216 (42%), Positives = 133/216 (61%), Gaps = 12/216 (5%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           M RGK++I++IEN TNRQVTFSKRRNG+ KKAQELTVLCDAKVS++M SST K+  Y+S 
Sbjct: 1   MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
             + K++ DEYQ+   +DLW  Q+E+MQE  + + E+N  L++EI +R+G  L  L+L +
Sbjct: 61  GVSLKKMYDEYQKIEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVE 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENR--------KLRNGFIINA 172
           LS L+Q+++  +  IR +K   I  Q  T RKK++  EE +         K R       
Sbjct: 121 LSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDLVMELEAKFRGPQFAIG 180

Query: 173 KEEDQHYELVDNEGHYDSVIRFQNGGPGIFALRLQP 208
           +++ ++YE       Y + +   N    +FAL   P
Sbjct: 181 EDDPRNYEAAAAAAVYGNDVAAAN----LFALSRHP 212

Dianthus caryophyllus (taxid: 3570)

>sp|Q03378|GLOB_ANTMA Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1

 Score =  137 bits (345), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 127/215 (59%), Gaps = 10/215 (4%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           M RGKI+IKRIEN++NRQVT+SKRRNG+ KKA+E++VLCDA VS+I+ +S+GK+ E+ S 
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           STT   +LD Y +     LW  ++E +   +  +K+ N +++ E+R   GE +  L+ K+
Sbjct: 61  STTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKE 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENR----KLRNGFIINAKEED 176
           L  LE  ++N    ++ +++  +       RK     EEEN+    KLR   +    +  
Sbjct: 121 LMVLEDALENGTSALKNKQMEFVRMM----RKHNEMVEEENQSLQFKLRQMHLDPMNDNV 176

Query: 177 QHYELVDNEGHYDSVIRFQNGGPGIFALRLQPNEP 211
              + V +  H+ ++  ++   P  FA R+QP +P
Sbjct: 177 MESQAVYDHHHHQNIADYEAQMP--FAFRVQPMQP 209

Transcription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).

Antirrhinum majus (taxid: 4151)

>sp|Q07474|MADS2_PETHY Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 134/224 (59%), Gaps = 31/224 (13%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           M RGKI+IKRIEN++NRQVT+SKRRNG+ KKA+E+TVLCDAKVS+I+  ++GK+ EY S 
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           STT   +LD YQ+     LW +++E +   +  +K+ N N++ ++R   GE +N L+ K+
Sbjct: 61  STTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKE 120

Query: 121 LSDLEQDVDNCLRIIRERK---LRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEE-- 175
           L  LE+ + N L  I  ++   LR +       RK  +  EEE+++L+  + ++ KE   
Sbjct: 121 LMVLEEGLTNGLSSISAKQSEILRMV-------RKNDQILEEEHKQLQ--YALHQKEMAA 171

Query: 176 --------DQHYELVDNEGHYDSVIRFQNGGPGIFALRLQPNEP 211
                   ++ Y   D +  Y  +       P  FALR+QP +P
Sbjct: 172 MGGNMRMIEEVYHQRDRDYEYQQM-------P--FALRVQPMQP 206

Transcription factor involved in the genetic control of flower development.

Petunia hybrida (taxid: 4102)

>sp|Q03416|GLOB_TOBAC Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 132/222 (59%), Gaps = 30/222 (13%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           M RGKI+IKRIEN++NRQVT+SKRRNG+ KKA+E++VLCDA+VS+I+ +S+GK+ E+  S
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF--S 58

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           ST+   +LD+Y +     LW +++E +   +  +K+ N N++ E+R   GE +  L+ ++
Sbjct: 59  STSLVDILDQYHKLTGRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRE 118

Query: 121 LSDLEQDVDNCLRIIRERK---LRAISGQIVTHRKKVRREEEE----NRKLRNGFII--- 170
           L  LE  +DN L  IR ++   LR +       RKK +  EEE    N +LR   I    
Sbjct: 119 LMMLEDALDNGLTSIRNKQNDLLRMM-------RKKTQSMEEEQDQLNWQLRQLEIASMN 171

Query: 171 -NAKEEDQHYELVDNEGHYDSVIRFQNGGPGIFALRLQPNEP 211
            N  E  + +   +NE        +Q   P  FA R+QP +P
Sbjct: 172 RNMGEIGEVFHQRENE--------YQTQMP--FAFRVQPMQP 203

Transcription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).

Nicotiana tabacum (taxid: 4097)

>sp|P48007|PIST_ARATH Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 126/220 (57%), Gaps = 16/220 (7%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           M RGKI+IKRIENA NR VTFSKRRNGL KKA+E+TVLCDAKV++I+ +S GK+ +Y   
Sbjct: 1   MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           S     +LD+YQ+     LW +++E +   +  +K+ N +L+ E+R   GE +  L+LK 
Sbjct: 61  SMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKN 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQHYE 180
           L  +E  +++ L  +R+ ++      +++ R+  +   EE R+L            Q  E
Sbjct: 121 LMAVEHAIEHGLDKVRDHQMEI----LISKRRNEKMMAEEQRQLTFQL--------QQQE 168

Query: 181 LVDNEGHYDSVIRFQNGGPGIFALRLQPNEP-LSSQWMSI 219
           +         ++R  +G    F  R+QP +P L  + MS+
Sbjct: 169 MAIASNARGMMMRDHDGQ---FGYRVQPIQPNLQEKIMSL 205

Probable transcription factor involved in the genetic control of flower development. Is required for normal development of petals and stamens in the wild-type flower. Forms an heterodimer with APETALA3 that is required for autoregulation of both AP3 and PI genes. AP3/PI heterodimer interacts with APETALA1 or SEPALLATA3 to form a ternary complex that could be responsible for the regulation of the genes involved in the flower development. AP3/PI heterodimer activates the expression of NAP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40702|MADS2_ORYSJ MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1

 Score =  124 bits (310), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 124/211 (58%), Gaps = 8/211 (3%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           M RGKI+IKRIEN+TNRQVTFSKRR+G+ KKA+E++VLCDA+V +++ SS GK+ +Y S 
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
            T+  ++L++YQ      LW  +++ +   +  +K+ N N++ E+R   GE LN L  K+
Sbjct: 61  KTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKE 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQHYE 180
           L  +E+ +DN +  + ++    +      H +  +  E+EN+ L   F ++ ++      
Sbjct: 121 LIMIEEALDNGIVNVNDK----LMDHWERHVRTDKMLEDENKLL--AFKLHQQDIALSGS 174

Query: 181 LVDNEGHYDSVIRFQNGGPGIFALRLQPNEP 211
           + D E  Y     F    P  F  R+QP+ P
Sbjct: 175 MRDLELGYHPDRDFAAQMPITF--RVQPSHP 203

Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2).

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
116078103	211	MADS-box protein [Citrus unshiu]	0.945	0.990	0.677	6e-75
343887324	211	MADS-box protein (CitMADS8) [Citrus unsh	0.945	0.990	0.672	3e-74
225458107	226	PREDICTED: floral homeotic protein DEFIC	0.945	0.924	0.635	5e-72
315418854	226	AP3 [Actinidia eriantha]	0.936	0.915	0.660	2e-71
126023786	226	flowering-related B-class MADS-box prote	0.945	0.924	0.630	3e-71
343788167	209	MADS box transcription factor [Eustoma s	0.909	0.961	0.665	4e-71
60100348	229	MADS box protein AP3 [Lotus japonicus]	0.941	0.908	0.650	9e-71
333827677	226	apetala3-like protein [Vitis labrusca x	0.945	0.924	0.625	1e-70
118426	227	RecName: Full=Floral homeotic protein DE	0.941	0.916	0.652	2e-70
288558694	227	DEFICIENS protein [Antirrhinum majus]	0.936	0.911	0.655	3e-70

>gi|116078103|dbj|BAF34915.1| MADS-box protein [Citrus unshiu]

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 143/211 (67%), Positives = 176/211 (83%), Gaps = 2/211 (0%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           M RGK+++KRIENATNRQVTFSKRRNGLFKKA+ELT+LCDAKVSI++CSST K  EY+S 
Sbjct: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           STTTKQLLD YQ+ L++DLWSS YEKM ENL  +++VN  LKK+IRQR+GESLNDL+L++
Sbjct: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQH-- 178
           L+ LEQD+ + L+IIRE K + ++ QI T ++KVR  ++EN+ L++GFIINAKEED H  
Sbjct: 121 LTGLEQDILDGLKIIRECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180

Query: 179 YELVDNEGHYDSVIRFQNGGPGIFALRLQPN 209
           YELVDN  H DS   FQN GPGIFALRLQPN
Sbjct: 181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887324|dbj|BAK61870.1| MADS-box protein (CitMADS8) [Citrus unshiu]

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 142/211 (67%), Positives = 175/211 (82%), Gaps = 2/211 (0%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           M RGK+++KRIENATNRQVTFSKRRNGLFKKA+ELT+LCDAKVSI++CSST K  EY+S 
Sbjct: 1   MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           STTTKQLLD YQ+ L++DLWSS YEKM ENL  +++VN  LKK+IRQR+GESLNDL+L++
Sbjct: 61  STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQH-- 178
           L+ LEQD+ + L+II E K + ++ QI T ++KVR  ++EN+ L++GFIINAKEED H  
Sbjct: 121 LTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180

Query: 179 YELVDNEGHYDSVIRFQNGGPGIFALRLQPN 209
           YELVDN  H DS   FQN GPGIFALRLQPN
Sbjct: 181 YELVDNGEHCDSDFGFQNEGPGIFALRLQPN 211

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458107|ref|XP_002279735.1| PREDICTED: floral homeotic protein DEFICIENS [Vitis vinifera] gi|125616882|gb|ABN46893.1| AP3-like MADS-box protein [Vitis labrusca x Vitis vinifera] gi|302142587|emb|CBI19790.3| unnamed protein product [Vitis vinifera]

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 134/211 (63%), Positives = 172/211 (81%), Gaps = 2/211 (0%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           MARGKI+IKRIEN+TNRQVT+SKRRNG+FKKA ELTVLCDAKVSIIM SSTGK+ EY+S 
Sbjct: 1   MARGKIEIKRIENSTNRQVTYSKRRNGIFKKASELTVLCDAKVSIIMLSSTGKLHEYISP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           STTTKQ+ D+YQ  L +DLWS  YE+MQENLK LK+VN NL+KEIRQR+GE L+DLS+++
Sbjct: 61  STTTKQIFDQYQNTLGVDLWSYHYERMQENLKKLKDVNKNLRKEIRQRMGEHLSDLSVEE 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQHYE 180
           L DLEQ++++ L+++R+RK + I+ QI T +KKVR  E+ ++ L + F  +A++ DQHY 
Sbjct: 121 LRDLEQEMESSLKMVRDRKYQVINNQIETFKKKVRNVEQIHKNLLHEF--DARDRDQHYG 178

Query: 181 LVDNEGHYDSVIRFQNGGPGIFALRLQPNEP 211
           LVDN G Y+SV+ F NG   +FAL LQPN P
Sbjct: 179 LVDNGGDYESVLGFSNGSSPVFALSLQPNPP 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315418854|gb|ADU15474.1| AP3 [Actinidia eriantha]

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 138/209 (66%), Positives = 167/209 (79%), Gaps = 2/209 (0%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           MARGKIQIKRIEN+TNRQVT+SKRRNGLFKKA ELTVLCDAKVSIIM SSTGK+ EY+S 
Sbjct: 1   MARGKIQIKRIENSTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEYISP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           S +TKQL D+YQ+ L IDLWSS YEKMQE+LK LK+VN N ++EIRQR+GESLN+LS + 
Sbjct: 61  SVSTKQLFDQYQKTLGIDLWSSHYEKMQEHLKKLKDVNRNFRREIRQRMGESLNELSYED 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQHYE 180
           L  LEQD++  L+IIR+RK + I  QI T++KK+R  EE +R L + F  +A   D  Y 
Sbjct: 121 LRGLEQDMETSLKIIRDRKYKVIGNQIETYKKKLRNVEEIHRSLLHEF--DAIGADPTYG 178

Query: 181 LVDNEGHYDSVIRFQNGGPGIFALRLQPN 209
           LVDNEG YDSV+ + +GG GI ALRLQP+
Sbjct: 179 LVDNEGDYDSVLAYSDGGRGILALRLQPD 207

Source: Actinidia eriantha

Species: Actinidia eriantha

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126023786|gb|ABN71371.1| flowering-related B-class MADS-box protein APETALA3 [Vitis vinifera] gi|269116070|gb|ACZ26526.1| apetala3 [Vitis vinifera]

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 133/211 (63%), Positives = 172/211 (81%), Gaps = 2/211 (0%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           MARGKI+IKRIEN+TNRQVT+SKRRNG+FKKA ELTVLCDAKVSIIM SSTGK+ EY+S 
Sbjct: 1   MARGKIEIKRIENSTNRQVTYSKRRNGIFKKASELTVLCDAKVSIIMLSSTGKLHEYISP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           STTTKQ+ D+YQ  L +DLWS  YE+MQENLK LK+VN NL+KEIRQR+GE L+DLS+++
Sbjct: 61  STTTKQIFDQYQNTLGVDLWSYHYERMQENLKKLKDVNKNLRKEIRQRMGEHLSDLSVEE 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQHYE 180
           L DLEQ++++ L+++R+RK + I+ QI T +KKVR  E+ ++ L + F  +A++ DQ+Y 
Sbjct: 121 LRDLEQEMESSLKMVRDRKYQVINNQIETFKKKVRNVEQIHKNLLHEF--DARDRDQYYG 178

Query: 181 LVDNEGHYDSVIRFQNGGPGIFALRLQPNEP 211
           LVDN G Y+SV+ F NG   +FAL LQPN P
Sbjct: 179 LVDNGGDYESVLGFSNGSSPVFALSLQPNPP 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343788167|gb|AEM60188.1| MADS box transcription factor [Eustoma sp. VFI-2011]

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 135/203 (66%), Positives = 162/203 (79%), Gaps = 2/203 (0%)

Query: 9   KRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLL 68
           KRIEN TNRQVT+SKRRNGLFKKA ELTVLCDA+VSIIM SST K+ EY+S + TTKQL+
Sbjct: 1   KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMVSSTHKLHEYISPTATTKQLI 60

Query: 69  DEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKKLSDLEQDV 128
           D+YQ+ L +DLWSS YEKMQE L+ LKEVN NL+KEIRQR+GESLNDLS  +L +L +DV
Sbjct: 61  DQYQKALGVDLWSSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLSYDQLGNLMEDV 120

Query: 129 DNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQHYELVDNEGHY 188
           DN LR IRERK + I  QI TH+KK+R  EE +R L     ++A++ED HY LVDN G Y
Sbjct: 121 DNALRGIRERKFKVIGNQIETHKKKLRNVEEIHRNLL--LELDARQEDPHYGLVDNGGDY 178

Query: 189 DSVIRFQNGGPGIFALRLQPNEP 211
           +SV+ F NGGP + ALRLQPN+P
Sbjct: 179 NSVVGFSNGGPCMLALRLQPNQP 201

Source: Eustoma sp. VFI-2011

Species: Eustoma sp. VFI-2011

Genus: Eustoma

Family: Gentianaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60100348|gb|AAX13301.1| MADS box protein AP3 [Lotus japonicus]

 Score =  271 bits (694), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 138/212 (65%), Positives = 165/212 (77%), Gaps = 4/212 (1%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           MARGKIQIKRIEN TNRQVT+SKRRNGLFKKA ELTVLCDAKVSIIM SSTGK+ EY+S 
Sbjct: 1   MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           ST+TKQ  D+YQ  + +DLWSS YE MQENLK LKEVN NL+KEIRQR+G+ LNDLS+ +
Sbjct: 61  STSTKQFFDQYQMTVGVDLWSSHYENMQENLKKLKEVNRNLRKEIRQRVGDCLNDLSMDE 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEE-ENRKLRNGFIINAKEEDQHY 179
           L  LEQ++DN  + +RERK + I+ QI T RKK   E E  NR LR+   ++A+ E+  Y
Sbjct: 121 LRLLEQEMDNAAKAVRERKYKVITNQIDTQRKKFNNEREVHNRLLRD---LDARAENPPY 177

Query: 180 ELVDNEGHYDSVIRFQNGGPGIFALRLQPNEP 211
           EL+DN G Y+SVI F N GP +FAL LQP+ P
Sbjct: 178 ELMDNGGEYESVIGFSNLGPRMFALSLQPSHP 209

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|333827677|gb|AEG19541.1| apetala3-like protein [Vitis labrusca x Vitis vinifera]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 132/211 (62%), Positives = 171/211 (81%), Gaps = 2/211 (0%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           MARGKI+IKRIEN+TNRQVT+SKRRNG+FKKA ELTVLCDAKVSIIM SSTGK+ EY+S 
Sbjct: 1   MARGKIEIKRIENSTNRQVTYSKRRNGIFKKASELTVLCDAKVSIIMLSSTGKLHEYISP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           S TTKQ+ D+YQ  L +DLWS  YE+MQENLK LK+VN NL+KEIRQR+GE L+DLS+++
Sbjct: 61  SATTKQIFDQYQNTLGVDLWSYHYERMQENLKKLKDVNKNLRKEIRQRMGEHLSDLSVEE 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQHYE 180
           L DLEQ++++ L+++R+RK + I+ QI T +KKVR  E+ ++ L + F  +A++ DQ+Y 
Sbjct: 121 LRDLEQEMESSLKMVRDRKYQVINNQIETFKKKVRNVEQIHKNLLHEF--DARDRDQYYG 178

Query: 181 LVDNEGHYDSVIRFQNGGPGIFALRLQPNEP 211
           LVDN G Y+SV+ F NG   +FAL LQPN P
Sbjct: 179 LVDNGGDYESVLGFSNGSSPVFALSLQPNPP 209

Source: Vitis labrusca x Vitis vinifera

Species: Vitis labrusca x Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118426|sp|P23706.1|DEFA_ANTMA RecName: Full=Floral homeotic protein DEFICIENS gi|16018|emb|CAA44629.1| DEF A protein [Antirrhinum majus] gi|16020|emb|CAA36268.1| deficiens [Antirrhinum majus]

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 137/210 (65%), Positives = 166/210 (79%), Gaps = 2/210 (0%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           MARGKIQIKRIEN TNRQVT+SKRRNGLFKKA EL+VLCDAKVSIIM SST K+ EY+S 
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           +T TKQL D+YQ+ + +DLWSS YEKMQE+LK L EVN NL++EIRQR+GESLNDL  ++
Sbjct: 61  TTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQ 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQHYE 180
           + +L +D+DN L++IRERK + IS QI T +KKVR  EE +R L   F  +A+ ED H+ 
Sbjct: 121 IVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEF--DARREDPHFG 178

Query: 181 LVDNEGHYDSVIRFQNGGPGIFALRLQPNE 210
           LVDNEG Y+SV+ F NGGP I ALRL  N 
Sbjct: 179 LVDNEGDYNSVLGFPNGGPRIIALRLPTNH 208

Source: Antirrhinum majus

Species: Antirrhinum majus

Genus: Antirrhinum

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|288558694|dbj|BAI68389.1| DEFICIENS protein [Antirrhinum majus]

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 137/209 (65%), Positives = 165/209 (78%), Gaps = 2/209 (0%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           MARGKIQIKRIEN TNRQVT+SKRRNGLFKKA EL+VLCDAKVSIIM SST K+ EY+S 
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISP 60

Query: 61  STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKK 120
           +T TKQL D+YQ+ + +DLWSS YEKMQE+LK L EVN NL++EIRQR+GESLNDL  ++
Sbjct: 61  TTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQ 120

Query: 121 LSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGFIINAKEEDQHYE 180
           + +L +D+DN L++IRERK + IS QI T +KKVR  EE  R L   F  +A+ ED H+ 
Sbjct: 121 IVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIPRNLVLEF--DARREDPHFG 178

Query: 181 LVDNEGHYDSVIRFQNGGPGIFALRLQPN 209
           LVDNEG Y+SV+ F NGGP I ALRL  N
Sbjct: 179 LVDNEGDYNSVLGFPNGGPRIIALRLPTN 207

Source: Antirrhinum majus

Species: Antirrhinum majus

Genus: Antirrhinum

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
UNIPROTKB|P23706	227	DEFA "Floral homeotic protein	0.936	0.911	0.593	1.4e-57
TAIR|locus:2096164	232	AP3 "APETALA 3" [Arabidopsis t	0.936	0.892	0.502	1.8e-48
UNIPROTKB|Q9ZS27	228	gdef2 "MADS-box protein, GDEF2	0.945	0.916	0.507	2.3e-48
UNIPROTKB|Q9ZS28	226	gdef1 "MADs-box protein, GDEF1	0.995	0.973	0.459	3e-46
UNIPROTKB|Q9ZS26	197	gglo1 "MADS-box protein, GGLO1	0.628	0.705	0.446	6.4e-28
TAIR|locus:2149264	208	PI "PISTILLATA" [Arabidopsis t	0.647	0.687	0.412	8.4e-28
UNIPROTKB|Q03378	215	GLO "Floral homeotic protein G	0.945	0.972	0.317	2.8e-27
TAIR|locus:2005522	214	AGL20 "AT2G45660" [Arabidopsis	0.647	0.668	0.441	2.3e-23
UNIPROTKB|Q9ATE5	268	FBP24 "MADS-box protein FBP24"	0.846	0.697	0.306	2.6e-23
UNIPROTKB|Q9ATE3	215	FBP28 "MADS-box transcription	0.651	0.669	0.422	6.1e-23

UNIPROTKB|P23706 DEFA "Floral homeotic protein DEFICIENS" [Antirrhinum majus (taxid:4151)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 124/209 (59%), Positives = 147/209 (70%)

Query:     1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
             MARGKIQIKRIEN TNRQVT+SKRRNGLFKKA EL+VLCDAKVSIIM SST K+ EY+S 
Sbjct:     1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISP 60

Query:    61 STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGEXXXXXXXXX 120
             +T TKQL D+YQ+ + +DLWSS YEKMQE+LK L EVN NL++EIRQR+GE         
Sbjct:    61 TTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQ 120

Query:   121 XXXXEQDVDNCLRIIRERKLRAISGQIVTHXXXXXXXXXXXXXLRNGFIINAKEEDQHYE 180
                  +D+DN L++IRERK + IS QI T              L   F  +A+ ED H+ 
Sbjct:   121 IVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEF--DARREDPHFG 178

Query:   181 LVDNEGHYDSVIRFQNGGPGIFALRLQPN 209
             LVDNEG Y+SV+ F NGGP I ALRL  N
Sbjct:   179 LVDNEGDYNSVLGFPNGGPRIIALRLPTN 207

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2096164 AP3 "APETALA 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 105/209 (50%), Positives = 137/209 (65%)

Query:     1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
             MARGKIQIKRIEN TNRQVT+SKRRNGLFKKA ELTVLCDA+VSIIM SS+ K+ EY+S 
Sbjct:     1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISP 60

Query:    61 STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGEXXXXXXXXX 120
             +TTTK+++D YQ    +D+W++QYE+MQE  + L E N NL+ +I+QRLGE         
Sbjct:    61 NTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQE 120

Query:   121 XXXXEQDVDNCLRIIRERKLRAISGQIVTHXXXXXXXXXXXXXLRNGFIINAKEEDQHYE 180
                 E +++N  +++RERK +++  QI T              L +   + A  ED HY 
Sbjct:   121 LRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRA--EDPHYG 178

Query:   181 LVDNEGHYDSVIRFQNGGPGIFALRLQPN 209
             LVDN G YDSV+ +Q  G   +ALR   N
Sbjct:   179 LVDNGGDYDSVLGYQIEGSRAYALRFHQN 207

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

UNIPROTKB|Q9ZS27 gdef2 "MADS-box protein, GDEF2" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 108/213 (50%), Positives = 136/213 (63%)

Query:     1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
             MARGKIQIK+IEN+TNRQVT+SKRRNGLFKKA ELTVLCDAKVSIIM S T K+ EY+S 
Sbjct:     1 MARGKIQIKKIENSTNRQVTYSKRRNGLFKKASELTVLCDAKVSIIMVSCTDKLHEYISP 60

Query:    61 STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGEXXXXXXXXX 120
             S TTKQ  D+YQ+   IDLW+S YEKMQE L+ LKEVN NL+++IRQRLG+         
Sbjct:    61 SITTKQFFDQYQKASGIDLWNSHYEKMQEELRQLKEVNRNLRRQIRQRLGDCLEDLGFEE 120

Query:   121 XXXXEQDVDNCLRIIRERKLRAISGQIVTHXXXXXXXXXXXXXLRNGFIINAKEEDQHYE 180
                 E++    + IIRERKL+ I  ++ T              L + F I    ED  Y 
Sbjct:   121 FLDLEKESQEAVYIIRERKLKVIGNKLETSKKKVRSAQDVYKKLMHEFDIRG--EDPQYG 178

Query:   181 LVDNEGHYDSVIRFQN--GGPGIFALRLQPNEP 211
             ++++   Y+++  +      P I  LRLQPN P
Sbjct:   179 MIEDGVEYEALYGYPPHISAPRILTLRLQPNHP 211

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS28 gdef1 "MADs-box protein, GDEF1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 102/222 (45%), Positives = 136/222 (61%)

Query:     1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
             M RGKI+IK+IEN TNRQVT+SKRRNG+FKKA ELTVLCDAKVS+IM S+TGK  EY+S 
Sbjct:     1 MGRGKIEIKKIENNTNRQVTYSKRRNGIFKKAHELTVLCDAKVSLIMFSNTGKFHEYISP 60

Query:    61 STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQR-LGEXXXXXXXX 119
             STTTK++ D+YQ  +  DLWSS YE+M+E +K LK+ N  L++EIRQR LGE        
Sbjct:    61 STTTKKMYDQYQSTVGFDLWSSHYERMKETMKKLKDTNNKLRREIRQRVLGEDFDGLDMN 120

Query:   120 XXXXXEQDVDNCLRIIRERKLRAISGQIVTHXXXXXXXXXXXXXLRNGFIINAKEEDQHY 179
                  EQ + + L ++RERK   I  Q  T              LR  +     + D+ Y
Sbjct:   121 DLTSLEQHMQDSLTLVRERKYHVIKTQTDTCRKRVRNLEQRNGNLRLDYE-TIHQLDKKY 179

Query:   180 ELVDNEGHYDSVIRFQNGGPGIFALRLQPNEPLSSQWMSIHE 221
             +  +NEG Y+SV+ + NG   ++A  + PN         +H+
Sbjct:   180 DTGENEGDYESVVAYSNGVSNLYAFCVHPNNIPHGAGYELHD 221

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS26 gglo1 "MADS-box protein, GGLO1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 62/139 (44%), Positives = 89/139 (64%)

Query:     1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
             M RGKI+IKRIEN +NRQVT+SKR+NG+ KKA+E+TVLCDA VS+++  S+GK+ EY S 
Sbjct:     1 MGRGKIEIKRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSSGKMYEYCSP 60

Query:    61 STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGEXXXXXXXXX 120
              T    +LD YQR     LW +++E +Q  +  +K+ N +++ E+R   GE         
Sbjct:    61 KTNLIDMLDRYQRLSGNKLWDAKHENLQNEIDRIKKENESMQIELRHLKGEDITSLNYEE 120

Query:   121 XXXXEQDVDNCLRIIRERK 139
                 E  ++N L  IRE+K
Sbjct:   121 LIAYEDALENGLTNIREKK 139

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2149264 PI "PISTILLATA" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
 Identities = 59/143 (41%), Positives = 89/143 (62%)

Query:     1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
             M RGKI+IKRIENA NR VTFSKRRNGL KKA+E+TVLCDAKV++I+ +S GK+ +Y   
Sbjct:     1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCP 60

Query:    61 STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGEXXXXXXXXX 120
             S     +LD+YQ+     LW +++E +   +  +K+ N +L+ E+R   GE         
Sbjct:    61 SMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKN 120

Query:   121 XXXXEQDVDNCLRIIRERKLRAI 143
                 E  +++ L  +R+ ++  +
Sbjct:   121 LMAVEHAIEHGLDKVRDHQMEIL 143

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048481 "ovule development" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q03378 GLO "Floral homeotic protein GLOBOSA" [Antirrhinum majus (taxid:4151)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 67/211 (31%), Positives = 113/211 (53%)

Query:     1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
             M RGKI+IKRIEN++NRQVT+SKRRNG+ KKA+E++VLCDA VS+I+ +S+GK+ E+ S 
Sbjct:     1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query:    61 STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGEXXXXXXXXX 120
             STT   +LD Y +     LW  ++E +   +  +K+ N +++ E+R   GE         
Sbjct:    61 STTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKE 120

Query:   121 XXXXEQDVDNCLRIIRERKLRAISGQIVTHXXXXXXXXXXXXXLRNGFIINAKEEDQHYE 180
                 E  ++N    ++ +++  +      +             LR   +    +     +
Sbjct:   121 LMVLEDALENGTSALKNKQMEFVRMMRKHNEMVEEENQSLQFKLRQMHLDPMNDNVMESQ 180

Query:   181 LVDNEGHYDSVIRFQNGGPGIFALRLQPNEP 211
              V +  H+ ++  ++   P  FA R+QP +P
Sbjct:   181 AVYDHHHHQNIADYEAQMP--FAFRVQPMQP 209

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2005522 AGL20 "AT2G45660" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 68/154 (44%), Positives = 93/154 (60%)

Query:     1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
             M RGK Q+KRIENAT+RQVTFSKRRNGL KKA EL+VLCDA+VS+I+ S  GK+ E+ SS
Sbjct:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query:    61 STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEI-------RQRLGEXX 113
             +   +  +D Y R  K D  S++    +EN+++LK    N+ K+I       R+ LGE  
Sbjct:    61 NM--QDTIDRYLRHTK-DRVSTK-PVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGI 116

Query:   114 XXXXXXXXXXXEQDVDNCLRIIRERKLRAISGQI 147
                        EQ ++  ++ IR RK +    QI
Sbjct:   117 GTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQI 150

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0009908 "flower development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0009409 "response to cold" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEP

GO:0000060 "protein import into nucleus, translocation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q9ATE5 FBP24 "MADS-box protein FBP24" [Petunia x hybrida (taxid:4102)]

 Score = 245 (91.3 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
 Identities = 58/189 (30%), Positives = 97/189 (51%)

Query:     1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
             M RGKI++KRIEN T+RQVTFSKRR GL KK  EL+VLCDA++ +I+ SS GK+ EY S 
Sbjct:     4 MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQ 63

Query:    61 STTTKQLLDEYQRRLKIDL-WSSQYEKMQENLKNLKEVNINLKKEIRQRLGEXXXXXXXX 119
               +  Q++  Y +     L       ++ + +  ++   +NL+  +++  G+        
Sbjct:    64 PHSMSQIISRYLQTTGASLPVEDNRVQLYDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYE 123

Query:   120 XXXXXEQDVDNCLRIIRERKLRAISGQIVTHXXXXXXXXXXXXXLRNGFIINAKEEDQHY 179
                  E+ +++ L  IR RKL  +  Q+                +   +++N +   Q  
Sbjct:   124 ELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQ-WLMNNQMYKQES 182

Query:   180 ELVDNEGHY 188
               +D+E H+
Sbjct:   183 AAMDHEDHH 191

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ATE3 FBP28 "MADS-box transcription factor FBP28" [Petunia x hybrida (taxid:4102)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 65/154 (42%), Positives = 94/154 (61%)

Query:     1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
             M RGK Q++RIENAT+RQVTFSKRRNGL KKA EL+VLCDA+VS+I+ S+ GK+ E+ SS
Sbjct:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSTRGKLYEFSSS 60

Query:    61 STTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEI-------RQRLGEXX 113
             S   +++++ Y+R  + D+   +    Q N++NLK    +L K+I       R+ LGE  
Sbjct:    61 SM--QEIIERYRRHSE-DVQGEKPAVEQNNMQNLKLDAASLMKKIEILETSKRKLLGEDL 117

Query:   114 XXXXXXXXXXXEQDVDNCLRIIRERKLRAISGQI 147
                        E+ ++  +  IR RK+     QI
Sbjct:   118 GSCSLEELQQIEKQLERSISTIRARKMEVFREQI 151

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q944S9	MAD16_ORYSJ	No assigned EC number	0.4786	0.9411	0.9285	yes	no
Q07472	MADS1_PETHY	No assigned EC number	0.6553	0.9185	0.8787	N/A	no
P23706	DEFA_ANTMA	No assigned EC number	0.6523	0.9411	0.9162	N/A	no
P35632	AP3_ARATH	No assigned EC number	0.5311	0.9366	0.8922	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	1e-34
smart00432	59	smart00432, MADS, MADS domain	9e-30
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	5e-27
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	1e-21
pfam01486	100	pfam01486, K-box, K-box region	4e-21
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	3e-20
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	1e-06

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  118 bits (297), Expect = 1e-34
 Identities = 45/71 (63%), Positives = 60/71 (84%), Gaps = 2/71 (2%)

Query: 2  ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSS 61
           RGKI+IKRIEN+TNRQVTFSKRRNGL KKA EL+VLCDA+V++I+ SS+GK+ E+ S S
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 62 TTTKQLLDEYQ 72
             +++++ YQ
Sbjct: 61 --MEKIIERYQ 69

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  104 bits (263), Expect = 9e-30
 Identities = 42/58 (72%), Positives = 50/58 (86%)

Query: 3  RGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
          R KI+IKRIEN TNRQVTFSKRRNGLFKKA EL+VLCDA+V++I+ S TGK+ E+ S 
Sbjct: 2  RRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 97.6 bits (244), Expect = 5e-27
 Identities = 42/59 (71%), Positives = 52/59 (88%)

Query: 2  ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           RGKI+IKRIEN T+RQVTFSKRRNGLFKKA EL+VLCDA+V++I+ S +GK+ E+ SS
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 85.0 bits (211), Expect = 1e-21
 Identities = 35/60 (58%), Positives = 44/60 (73%)

Query: 2  ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSS 61
           R KI+IKRIEN   R VTFSKRR GLFKKA EL+ LC A+V++I+ S +GK+  +  SS
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 83.7 bits (208), Expect = 4e-21
 Identities = 45/95 (47%), Positives = 59/95 (62%)

Query: 71  YQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKKLSDLEQDVDN 130
           YQ+    DLW S+YE +Q+    LK+ N NL++E R  LGE L  LSLK+L  LEQ ++N
Sbjct: 1   YQKLSGNDLWESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLEN 60

Query: 131 CLRIIRERKLRAISGQIVTHRKKVRREEEENRKLR 165
            L+ IR RK   +  QI   +KK R  +EENR LR
Sbjct: 61  GLKHIRSRKNELLLNQIEELQKKERELQEENRNLR 95

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 80.1 bits (198), Expect = 3e-20
 Identities = 38/51 (74%), Positives = 46/51 (90%)

Query: 9  KRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVS 59
          KRIEN +NRQVTFSKRRNG+FKKA EL+VLCDA+V++I+ SSTGK+ EY S
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 1   MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           +   KI I  I N T R VTFSKR++G+ KKA EL+VL   +V +++ S  G V  + + 
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 61  S 61
            
Sbjct: 141 K 141

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.96
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.93
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.84
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.79
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.47
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	92.98
PRK04098	158	sec-independent translocase; Provisional	89.16
PF10504	159	DUF2452: Protein of unknown function (DUF2452); In	87.97
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	85.07
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	84.85
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	83.73
PRK10884	206	SH3 domain-containing protein; Provisional	82.01
cd00187	445	TOP4c DNA Topoisomerase, subtype IIA; domain A'; b	80.35

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=5.5e-39  Score=265.40  Aligned_cols=154  Identities=40%  Similarity=0.569  Sum_probs=122.4

Q ss_pred             CCcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHhhhccccc
Q 040046            1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLKIDLW   80 (221)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~~~~~~~   80 (221)
                      |||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+|++|+|++|+.++.+|++||...+..+..
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999876799999999876543211


Q ss_pred             c-----hhh---------------hh-----hHHHHHHHHHHHHHHH---HHHHhhcCCCCCCCCH-HHHHHHHHHHHHH
Q 040046           81 S-----SQY---------------EK-----MQENLKNLKEVNINLK---KEIRQRLGESLNDLSL-KKLSDLEQDVDNC  131 (221)
Q Consensus        81 ~-----~~~---------------e~-----lq~el~kLk~en~~L~---~~ir~~~Ge~L~~Ls~-~EL~~LE~~Le~~  131 (221)
                      .     ...               +.     .......++...+.+.   ...+++.|+++.++++ ++|..++.+++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            0     000               00     1112222333333433   3367889999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHH
Q 040046          132 LRIIRERKLRAISGQIV-THRKKV  154 (221)
Q Consensus       132 L~~VR~rK~~~l~~qi~-~lkkK~  154 (221)
                      +..+|..+...+.+++. .++.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~  184 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSNFQVLQEKE  184 (195)
T ss_pred             hcCCCCCCCcCCcchhhhhhcccc
Confidence            99999999988877765 344333

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=4.5e-35  Score=208.53  Aligned_cols=77  Identities=61%  Similarity=0.986  Sum_probs=74.4

Q ss_pred             CcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHhhhccccc
Q 040046            2 ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLKIDLW   80 (221)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~~~~~~~   80 (221)
                      ||+||+|++|||+.+|++||+||++||||||+||||||||+||+|||||+|++|.|+||+  +++||+||++.++.++|
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s--~~~vl~ry~~~~~~~~~   77 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS--MEKIIERYQKTSGSSLW   77 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCC--HHHHHHHHHhccccccC
Confidence            899999999999999999999999999999999999999999999999999999999997  59999999999988776

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=4e-31  Score=190.86  Aligned_cols=74  Identities=47%  Similarity=0.731  Sum_probs=70.6

Q ss_pred             CcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHhhhc
Q 040046            2 ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLK   76 (221)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~~~   76 (221)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+.+.|++++. +..++++|...+.
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~   74 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSA   74 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCH
Confidence            8999999999999999999999999999999999999999999999999999999988765 9999999988764

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=6.2e-31  Score=177.35  Aligned_cols=59  Identities=71%  Similarity=1.036  Sum_probs=58.2

Q ss_pred             CcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCcccccccc
Q 040046            2 ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS   60 (221)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sp   60 (221)
                      ||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||+|||||+|+++.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999987

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.96  E-value=6.9e-30  Score=172.37  Aligned_cols=59  Identities=71%  Similarity=1.048  Sum_probs=57.7

Q ss_pred             CcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCcccccccc
Q 040046            2 ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS   60 (221)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sp   60 (221)
                      ||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||+|||||+|+++.|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            89999999999999999999999999999999999999999999999999999999875

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.93  E-value=4.9e-28  Score=158.29  Aligned_cols=51  Identities=55%  Similarity=0.884  Sum_probs=46.8

Q ss_pred             EEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccc
Q 040046            9 KRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVS   59 (221)
Q Consensus         9 k~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~s   59 (221)
                      |+|+|++.|++||+||+.||+|||.||||||||+||+|||||+|++|.|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999976

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.84  E-value=1.9e-20  Score=139.75  Aligned_cols=98  Identities=42%  Similarity=0.649  Sum_probs=95.3

Q ss_pred             HHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046           71 YQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKKLSDLEQDVDNCLRIIRERKLRAISGQIVTH  150 (221)
Q Consensus        71 Y~~~~~~~~~~~~~e~lq~el~kLk~en~~L~~~ir~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~VR~rK~~~l~~qi~~l  150 (221)
                      |++.++.+.|...++.++.++.+|+.+++.|+..+|+++|+||++||++||..||++|+.+|.+||+||.++|.++|+.+
T Consensus         1 Y~~~~~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l   80 (100)
T PF01486_consen    1 YQKQSGTDLWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEEL   80 (100)
T ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            77888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 040046          151 RKKVRREEEENRKLRNGF  168 (221)
Q Consensus       151 kkK~~~l~e~n~~L~~~~  168 (221)
                      ++|++.+.++|..|..++
T Consensus        81 ~~ke~~l~~en~~L~~~~   98 (100)
T PF01486_consen   81 KKKERELEEENNQLRQKI   98 (100)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999999876

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.79  E-value=2.4e-20  Score=159.67  Aligned_cols=60  Identities=42%  Similarity=0.636  Sum_probs=58.9

Q ss_pred             CcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccc
Q 040046            2 ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSS   61 (221)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps   61 (221)
                      ||.||+|++|||+..|.|||||||.||||||+|||||.|.+|-|+|.|.+|-+|.|++|-
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpK  122 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPK  122 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccc
Confidence            799999999999999999999999999999999999999999999999999999999985

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.47  E-value=1.6e-14  Score=129.03  Aligned_cols=61  Identities=41%  Similarity=0.590  Sum_probs=59.9

Q ss_pred             CCcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccc
Q 040046            1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSS   61 (221)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps   61 (221)
                      |||+||.|..|+|+.+|.|||+||+.||+|||+||+||.|.+|.++|.|.+|+++.|++|.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~  141 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPK  141 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCc
Confidence            7899999999999999999999999999999999999999999999999999999999985

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=92.98  E-value=0.87  Score=31.79  Aligned_cols=48  Identities=23%  Similarity=0.315  Sum_probs=34.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046          116 LSLKKLSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGF  168 (221)
Q Consensus       116 Ls~~EL~~LE~~Le~~L~~VR~rK~~~l~~qi~~lkkK~~~l~e~n~~L~~~~  168 (221)
                      ||++-|..||..+..++..|..     +..+++.|+.+...|.++|..|..+.
T Consensus         1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en   48 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEEN   48 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            5789999999999999998864     55556677777666666666665544

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK04098 sec-independent translocase; Provisional

Probab=89.16  E-value=0.68  Score=37.20  Aligned_cols=77  Identities=14%  Similarity=0.254  Sum_probs=41.4

Q ss_pred             ceeeeeecCCCccccccccchhhHHHHHHHHhhhccc--ccc--hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 040046           42 KVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLKID--LWS--SQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLS  117 (221)
Q Consensus        42 ~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~~~~~--~~~--~~~e~lq~el~kLk~en~~L~~~ir~~~Ge~L~~Ls  117 (221)
                      =||||||+| +|+.+.+-   ++-+.+-.|++..+.-  -.+  -....+++++.+.++..+.....+|       ..++
T Consensus        14 vVaLlvfGP-~KLP~~~r---~lGk~ir~~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~-------~~~~   82 (158)
T PRK04098         14 VVAIIFLGP-DKLPQAMV---DIAKFFKAVKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLK-------KKLK   82 (158)
T ss_pred             HHHHhhcCc-hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------hccC
Confidence            368999999 88888766   3667777777654210  000  1123344444444444433333332       2266


Q ss_pred             HHHHHHHHHHHH
Q 040046          118 LKKLSDLEQDVD  129 (221)
Q Consensus       118 ~~EL~~LE~~Le  129 (221)
                      +++|.++-..+.
T Consensus        83 ~eel~~~~~~~~   94 (158)
T PRK04098         83 FEELDDLKITAE   94 (158)
T ss_pred             hHHHHHHhhhhh
Confidence            777766644433

>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function

Probab=87.97  E-value=6.1  Score=31.78  Aligned_cols=44  Identities=30%  Similarity=0.339  Sum_probs=35.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 040046          117 SLKKLSDLEQDVDNCLRIIRER---KLRAISGQIVTHRKKVRREEEE  160 (221)
Q Consensus       117 s~~EL~~LE~~Le~~L~~VR~r---K~~~l~~qi~~lkkK~~~l~e~  160 (221)
                      +..||..|-++++.+...+|++   |-.+|.+||..|+++-+.+.++
T Consensus        28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~   74 (159)
T PF10504_consen   28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEE   74 (159)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999998875   6677888888888776555443

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=85.07  E-value=0.21  Score=27.14  Aligned_cols=14  Identities=29%  Similarity=0.359  Sum_probs=11.4

Q ss_pred             eeeeeecCCCcccc
Q 040046           43 VSIIMCSSTGKVQE   56 (221)
Q Consensus        43 v~lIifs~~gk~~~   56 (221)
                      -.+.+|||.|+++.
T Consensus         3 ~~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    3 RSITTFSPDGRLFQ   16 (23)
T ss_dssp             SSTTSBBTTSSBHH
T ss_pred             CCceeECCCCeEEe
Confidence            45679999999984

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=84.85  E-value=2.2  Score=28.62  Aligned_cols=32  Identities=19%  Similarity=0.291  Sum_probs=24.3

Q ss_pred             hhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040046          107 QRLGESLNDLSLKKLSDLEQDVDNCLRIIRER  138 (221)
Q Consensus       107 ~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~VR~r  138 (221)
                      +..|+||+.||++||..--..|+.=+.+++.-
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~   43 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEAA   43 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999998766666665555543

The function of this family is unknown.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=83.73  E-value=22  Score=31.72  Aligned_cols=74  Identities=15%  Similarity=0.239  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHhhc--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046           95 KEVNINLKKEIRQRL--GESLNDLSLKKLSDLEQDVDNCLRIIRERKLRA--ISGQIVTHRKKVRREEEENRKLRNGF  168 (221)
Q Consensus        95 k~en~~L~~~ir~~~--Ge~L~~Ls~~EL~~LE~~Le~~L~~VR~rK~~~--l~~qi~~lkkK~~~l~e~n~~L~~~~  168 (221)
                      .+....|+.+++++.  -+.+++++.++|..+-..|..-...|...+.++  +.++...+..++....+.-..+..++
T Consensus       178 ~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I  255 (312)
T smart00787      178 RDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI  255 (312)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444554443  457899999999999999988888877766653  33444445555554444444444444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=82.01  E-value=29  Score=29.07  Aligned_cols=49  Identities=14%  Similarity=0.267  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046          120 KLSDLEQDVDNCLRIIR--ERKLRAISGQIVTHRKKVRREEEENRKLRNGF  168 (221)
Q Consensus       120 EL~~LE~~Le~~L~~VR--~rK~~~l~~qi~~lkkK~~~l~e~n~~L~~~~  168 (221)
                      ...++.+.+..+-..+.  ...++-+.+++..++.+...++.+|..+....
T Consensus       119 ~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        119 RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444333333  33444556666666666666666665555443

>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II

Probab=80.35  E-value=34  Score=32.12  Aligned_cols=146  Identities=19%  Similarity=0.274  Sum_probs=71.7

Q ss_pred             ccc-eeEEecCCCCc-cccc---cccc-------cccchhhh-hhhcccCcceeeeeecCCCccccccccchhhHHHHHH
Q 040046            4 GKI-QIKRIENATNR-QVTF---SKRR-------NGLFKKAQ-ELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDE   70 (221)
Q Consensus         4 ~Ki-~ik~Ien~~~R-qvTf---sKRr-------~GL~KKA~-ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~R   70 (221)
                      +|+ .|+-|.+.++| .|.|   -||.       ++|+|+.. +-|+-|    -+++|.++|++..| +    +++||+.
T Consensus       253 ~k~~~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~~----Nm~~~~~~g~p~~~-~----l~~iL~~  323 (445)
T cd00187         253 KKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGI----NMVAFDPNGRPKKL-N----LKEILQE  323 (445)
T ss_pred             CCCcccceeeeccCCCceEEEEEECCCccHHHHHHHHHHhcCCceeeee----eEEEEecCCeeEEe-C----HHHHHHH
Confidence            344 47777777777 3444   2333       25554432 223333    67888889999888 5    5789988


Q ss_pred             HHhhhccc---ccchhhhhhHHHHHHHHHHHHHHH------HHH------HhhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 040046           71 YQRRLKID---LWSSQYEKMQENLKNLKEVNINLK------KEI------RQRLGESLNDLSLKKLSDLEQDVDNCLRII  135 (221)
Q Consensus        71 Y~~~~~~~---~~~~~~e~lq~el~kLk~en~~L~------~~i------r~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~V  135 (221)
                      |-...-.-   .......++++++..+.-...-+.      ..+      +.-+-+.+..+.+.+ .+.+--|+..|.++
T Consensus       324 f~~~R~~~~~rR~~~~l~k~~~rl~il~g~~~~i~~id~vi~~ir~s~~ak~~L~~~l~~~~~~~-~qa~~IL~m~L~~L  402 (445)
T cd00187         324 FLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILNIDEVINLIRSSDEAKKALIEELEKLGFSE-IQADAILDMRLRRL  402 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCH-HHHHHHHHhHHHHh
Confidence            86553210   011112233333332222111110      111      000000111112222 24566677777776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 040046          136 RERKLRAISGQIVTHRKKVRREEE  159 (221)
Q Consensus       136 R~rK~~~l~~qi~~lkkK~~~l~e  159 (221)
                      ..-....+.++++.++++...++.
T Consensus       403 T~~e~~kL~~E~~~l~~ei~~l~~  426 (445)
T cd00187         403 TKLEREKLLKELKELEAEIEDLEK  426 (445)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666555553

DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	221
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		8e-12
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		1e-11
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		1e-11
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		1e-11
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		2e-11
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		5e-11
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		1e-08
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		4e-06
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		4e-06

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 45/60 (75%)
Query: 1  MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
          M R KIQI RI +  NRQVTF+KR+ GL KKA EL+VLCD ++++I+ +S  ++ +Y S+
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 45/59 (76%)
Query: 2  ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           R KIQI RI +  NRQVTF+KR+ GL KKA EL+VLCD ++++I+ +S+ K+ +Y S+
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 59

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 45/59 (76%)
Query: 2  ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           R KIQI RI +  NRQVTF+KR+ GL KKA EL+VLCD ++++I+ +S+ K+ +Y S+
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 59

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 45/59 (76%)
Query: 2  ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           R KIQI RI +  NRQVTF+KR+ GL KKA EL+VLCD ++++I+ +S+ K+ +Y S+
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 59

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 45/59 (76%)
Query: 2  ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           R KIQI RI +  NRQVTF+KR+ GL KKA EL+VL DA++++I+ +S+ K+ +Y S+
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYAST 59

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 44/59 (74%)
Query: 2  ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
           R KIQI RI +  NRQVTF+KR+ GL KKA EL+VLCD ++++I+ +S  ++ +Y S+
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 59

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 3  RGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEY 57
          R KI+IK IEN T R VTFSKR++G+ KKA EL+VL   +V +++ S TG V  +
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTF 72

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 2  ARGKIQIKR--IENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVS 59
           RG+++IK   I+N   R  TFSKR+ G+ KKA EL+ L   +V +++ S TG V  + +
Sbjct: 8  TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 2  ARGKIQIKR--IENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVS 59
           RG+++IK   I+N   R  TFSKR+ G+ KKA EL+ L   +V +++ S TG V  + +
Sbjct: 9  TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	221
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	3e-32
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	4e-32
1egw_A	77	MADS box transcription enhancer factor 2, polypept	9e-32
1hbx_A	92	SRF, serum response factor; gene regulation, trans	2e-31
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	2e-30

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  112 bits (281), Expect = 3e-32
 Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
            R KI+IK IEN T R VTFSKR++G+ KKA EL+VL   +V +++ S TG V  + + 
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61 STTTKQLLDEYQRRLKID 78
              + ++ + + R  I 
Sbjct: 76 K--FEPIVTQQEGRNLIQ 91

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  111 bits (279), Expect = 4e-32
 Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 2/88 (2%)

Query: 2  ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSS 61
           R KIQI RI +  NRQVTF+KR+ GL KKA EL+VLCD ++++I+ +S+ K+ +Y S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 TTTKQLLDEYQRRLKIDLWSSQYEKMQE 89
              ++L +Y    +     +  + ++ 
Sbjct: 61 --MDKVLLKYTEYNEPHESRTNSDIVEA 86

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  110 bits (276), Expect = 9e-32
 Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 2  ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSS 61
           R KIQI RI +  NRQVTF+KR+ GL KKA EL+VLCD ++++I+ +S+ K+ +Y S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 TTTKQLLDEYQR 73
              ++L +Y  
Sbjct: 61 --MDKVLLKYTE 70

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  109 bits (275), Expect = 2e-31
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 1  MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
            R KI+++ I+N   R  TFSKR+ G+ KKA EL+ L   +V +++ S TG V  + + 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 STTTKQLLDEYQRR 74
              + ++     +
Sbjct: 70 K--LQPMITSETGK 81

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  107 bits (269), Expect = 2e-30
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 1  MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSS 60
            R KI+++ I+N   R  TFSKR+ G+ KKA EL+ L   +V +++ S TG V  + + 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 STTTKQLLDEYQRR 74
              + ++     +
Sbjct: 69 K--LQPMITSETGK 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=1.1e-39  Score=230.06  Aligned_cols=73  Identities=45%  Similarity=0.715  Sum_probs=69.1

Q ss_pred             CcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHhhhc
Q 040046            2 ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLK   76 (221)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~~~   76 (221)
                      ||+||+|++|||+++|||||+|||+||||||+|||||||||||||||||+||+|+|+||+  |++||+||++.+.
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~--~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCC--HHHHHHHHHhccC
Confidence            899999999999999999999999999999999999999999999999999999999874  8999999998753

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=6.1e-39  Score=231.77  Aligned_cols=73  Identities=45%  Similarity=0.712  Sum_probs=70.4

Q ss_pred             CcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHhhhc
Q 040046            2 ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLK   76 (221)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~~~   76 (221)
                      ||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+|++|+|+||  +|.+||+||++.+.
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~--~~~~il~rY~~~~~   73 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEYNE   73 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHCCS
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCC--CHHHHHHHHHhcCc
Confidence            89999999999999999999999999999999999999999999999999999999997  48999999998764

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=1.6e-37  Score=228.01  Aligned_cols=78  Identities=38%  Similarity=0.546  Sum_probs=71.5

Q ss_pred             CCcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHhhhccccc
Q 040046            1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLKIDLW   80 (221)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~~~~~~~   80 (221)
                      |||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+||+|+|+||+  +..|+++|.   |.++|
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps--~~~il~r~~---G~~lw   90 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQE---GRNLI   90 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHH---HHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCC--HHHHHHHhh---CCcHH
Confidence            8999999999999999999999999999999999999999999999999999999999996  679988775   44566


Q ss_pred             chh
Q 040046           81 SSQ   83 (221)
Q Consensus        81 ~~~   83 (221)
                      +..
T Consensus        91 ~~c   93 (100)
T 1mnm_A           91 QAC   93 (100)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            544

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=3.2e-37  Score=223.61  Aligned_cols=70  Identities=33%  Similarity=0.523  Sum_probs=67.2

Q ss_pred             CCcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHH
Q 040046            1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQ   72 (221)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~   72 (221)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+  |..+|++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~--~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGG--GGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCC--HHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999985  789998664

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=1.4e-36  Score=224.31  Aligned_cols=69  Identities=33%  Similarity=0.530  Sum_probs=66.4

Q ss_pred             CCcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHH
Q 040046            1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEY   71 (221)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY   71 (221)
                      |||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|++|+  |..||+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~--~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGG--GGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCcc--HHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999985  78899864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	221
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-29
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	7e-29
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	1e-27

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (257), Expect = 2e-29
 Identities = 34/71 (47%), Positives = 51/71 (71%), Gaps = 2/71 (2%)

Query: 3  RGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSST 62
          R KIQI RI +  NRQVTF+KR+ GL KKA EL+VLCD ++++I+ +S+ K+ +Y  +ST
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY--AST 59

Query: 63 TTKQLLDEYQR 73
             ++L +Y  
Sbjct: 60 DMDKVLLKYTE 70

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (254), Expect = 7e-29
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 5/88 (5%)

Query: 2  ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSS 61
           R KI+IK IEN T R VTFSKR++G+ KKA EL+VL   +V +++ S TG V  + +  
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 62

Query: 62 TTTKQLLDEYQRRLKIDLWSSQYEKMQE 89
             + ++ + + R   +L  +      +
Sbjct: 63 --FEPIVTQQEGR---NLIQACLNAPDD 85

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.3 bits (245), Expect = 1e-27
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 3  RGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSST 62
          R KI+++ I+N   R  TFSKR+ G+ KKA EL+ L   +V +++ S TG V  +  ++ 
Sbjct: 4  RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF--ATR 61

Query: 63 TTKQLLDEYQRR 74
            + ++     +
Sbjct: 62 KLQPMITSETGK 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-38  Score=219.05  Aligned_cols=70  Identities=47%  Similarity=0.762  Sum_probs=68.2

Q ss_pred             CcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHh
Q 040046            2 ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQR   73 (221)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~   73 (221)
                      ||+||+|++|||+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+  +++|++||++
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~--~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCC--HHHHHHHHhc
Confidence            899999999999999999999999999999999999999999999999999999999985  8999999986

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=214.83  Aligned_cols=72  Identities=32%  Similarity=0.516  Sum_probs=69.0

Q ss_pred             CCcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHhh
Q 040046            1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRR   74 (221)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~   74 (221)
                      +||+||+|++|||+.+|+|||+|||+||||||+||||||||+||||||||+|++|.|+||+  ++.|+++|+..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~--~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGG--GHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCC--HHHHHHHHHHH
Confidence            6999999999999999999999999999999999999999999999999999999999985  89999999753

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-36  Score=214.47  Aligned_cols=72  Identities=42%  Similarity=0.602  Sum_probs=69.2

Q ss_pred             CcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHhhh
Q 040046            2 ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRL   75 (221)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~~   75 (221)
                      ||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+  |..|++||+..+
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~--v~~vl~r~~~~~   74 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQEGRN   74 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCC--HHHHHHHHhccc
Confidence            899999999999999999999999999999999999999999999999999999999985  899999998653