Citrus Sinensis ID: 040051

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590

MGSTGEQGAEVQQRSYWRWSKQDFLPEESFQSWGNYKHALSQTHFRFMDRLISRSHDGNEICELRKQSENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGICTLVMLVYYFFFGLHATYDMAHQQHGPGPLKDNDEDTIGKAEP

cccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccHHHHHHHccccEEcccEEEEcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccHHHHHHHccEEEEEEEHHHHHHccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHEEEEccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccccccccccccc

ccccccccccccccccEEEcccccccccHHHcHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHccHEEEHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHcccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccccccccc

mgstgeqgaEVQQRSYwrwskqdflpeesfqswgnykhaLSQTHFRFMDRLisrshdgneICELRKQSENDMKRCLTWWDLTWFGFGAVIGAGIFVLTgqeahkhagpAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLlnrepnslrIHTNlregynlldPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFahadasnlkpflpfgsegIFKAAAVVYFAYGGFDNIATMAeetknpsrdipigllgSMSMITIIYCLMALSlcvmqpytdidpnaaySVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIArahmippwfalvhpktgtpinANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNLLMLVIFLLIIIASSAGisaywglkpngwvgYVITVPLWFLgtlgisvllpqqrtpktwgvplvpwlpslsiATNIFLMGSLGYQAFVRFGICTLVMLVYYFFFGLHatydmahqqhgpgplkdndedtigkaep

mgstgeqgaevqqrsyWRWSKQDFLPEESFQSWGNYKHALSQTHFRFMDRLISRSHDGNEICELRKQSENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGICTLVMLVYYFFFGLHATYDMAHQQHgpgplkdndeDTIGKAEP

MGSTGEQGAEVQQRSYWRWSKQDFLPEESFQSWGNYKHALSQTHFRFMDRLISRSHDGNEICELRKQSENDMKRCLTWWDLTWfgfgavigagifvLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPiavavlataatiasistRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFALVHPKTGTPinanllivlasalialFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNllmlviflliiiassagisaYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGICTLVMLVYYFFFGLHATYDMAHQQHGPGPLKDNDEDTIGKAEP

**************SYWRWSKQDFLPEESFQSWGNYKHALSQTHFRFMDRLISRSHDGNEICELR****NDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAE******RDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGICTLVMLVYYFFFGLHATYDM***********************

****************WRWSKQDFLPEESFQS**NYKHALSQTHFRFMDRLIS**********************LTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGICTLVMLVYYFFFGL*****************************

*************RSYWRWSKQDFLPEESFQSWGNYKHALSQTHFRFMDRLISRSHDGNEICELRKQSENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGICTLVMLVYYFFFGLHATYDMAH*********************

*************RSYWRWSKQDFLPEESFQSWGNYKHALSQTHFRFMDRLISRSHDGNEICE*RKQSENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGICTLVMLVYYFFFGLHATYDMA**********************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		590	2.2.26 [Sep-21-2011]
O64759		569	Cationic amino acid trans	yes	no	0.957	0.992	0.793	0.0
Q84MA5		594	Cationic amino acid trans	no	no	0.961	0.954	0.629	0.0
Q9SHH0		590	Cationic amino acid trans	no	no	0.945	0.945	0.625	0.0
Q9LZ20		583	Cationic amino acid trans	no	no	0.922	0.933	0.407	1e-117
Q9SQZ0		584	Cationic amino acid trans	no	no	0.922	0.931	0.405	1e-116
P70423		618	Cationic amino acid trans	yes	no	0.893	0.852	0.290	2e-59
Q797A7		461	Uncharacterized amino aci	yes	no	0.713	0.913	0.334	5e-59
A8I499		657	Low affinity cationic ami	yes	no	0.877	0.788	0.274	1e-58
Q9C5D6		569	Cationic amino acid trans	no	no	0.864	0.896	0.310	6e-58
B5D5N9		657	Low affinity cationic ami	yes	no	0.884	0.794	0.280	8e-58

>sp\|O64759\|CAAT5_ARATH Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5 PE=1 SV=1	Back alignment and function desciption

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/566 (79%), Positives = 499/566 (88%), Gaps = 1/566 (0%)

Query: 10  EVQQRSYWRWSKQDFLPEESFQSWGNYKHALSQTHFRFMDRLISRSHDGNEICELRKQSE 69
           E ++R YWRWSK+DF PEESFQS+G+Y+ ALSQT  RF +RL+SRS D NE  EL+KQSE
Sbjct: 2   EGEERGYWRWSKRDFFPEESFQSFGSYRAALSQTCSRFKNRLVSRSDDENERFELKKQSE 61

Query: 70  NDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYT 129
           ++MKRCLTWWDL WFGFG+VIGAGIFVLTGQEAH+ AGPAIVLSYV SG+SAMLSVFCYT
Sbjct: 62  HEMKRCLTWWDLVWFGFGSVIGAGIFVLTGQEAHEQAGPAIVLSYVVSGLSAMLSVFCYT 121

Query: 130 EFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPN 189
           EFA+EIPVAGGSFAYLRIELGDFAAFITAGNILLESIVG AAVARAWTSYF TLLNR PN
Sbjct: 122 EFAVEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGTAAVARAWTSYFATLLNRSPN 181

Query: 190 SLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGF 249
           +LRI T+L  G+NLLDPIAV V+A +ATIASISTRKTS+LNWIASAINT+VI FVII GF
Sbjct: 182 ALRIKTDLSSGFNLLDPIAVVVIAASATIASISTRKTSLLNWIASAINTLVIFFVIIAGF 241

Query: 250 AHADASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSM 309
            HAD SNL PFLPFG EG+F+AAAVVYFAYGGFD+IATMAEETKNPSRDIPIGLLGSMS+
Sbjct: 242 IHADTSNLTPFLPFGPEGVFRAAAVVYFAYGGFDSIATMAEETKNPSRDIPIGLLGSMSI 301

Query: 310 ITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGAL 369
           IT+IYCLMALSL +MQ YTDIDPNAAYSVAFQ VGMKW KYLVALGALKGMTTVLLVGAL
Sbjct: 302 ITVIYCLMALSLSMMQKYTDIDPNAAYSVAFQSVGMKWGKYLVALGALKGMTTVLLVGAL 361

Query: 370 GNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLST 429
           G ARY THIAR HMIPP FALVHPKTGTPINANLL+ + SALIA FSGLD+L++LLS+ST
Sbjct: 362 GQARYVTHIARTHMIPPIFALVHPKTGTPINANLLVAIPSALIAFFSGLDVLASLLSIST 421

Query: 430 LFVFMMMAVALLVRRYYVREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNG-WVGYV 488
           LF+F MM +ALLVRRYYVR+ TPR +L+ L+  LL ++ SS G SAYWG++  G W+GY 
Sbjct: 422 LFIFTMMPIALLVRRYYVRQDTPRVHLIKLITCLLFVVVSSMGTSAYWGMQRKGSWIGYT 481

Query: 489 ITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGIC 548
           +TVP WFLGTLGI   +PQQRTPK WGVPLVPWLP LSIATNIFLMGSLG  AFVRFG+C
Sbjct: 482 VTVPFWFLGTLGIVFFVPQQRTPKVWGVPLVPWLPCLSIATNIFLMGSLGAMAFVRFGVC 541

Query: 549 TLVMLVYYFFFGLHATYDMAHQQHGP 574
           TL ML+YYF  GLHAT+DMAHQQ  P
Sbjct: 542 TLAMLLYYFLLGLHATFDMAHQQIVP 567

High-affinity permease involved in the transport of the cationic amino acids (e.g. arginine, and, to a lower extent, citrulline and glutamate). Transport mostly basic amino-acids, and, to a lower extent neutral and acidic amino-acids.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q84MA5\|CAAT1_ARATH Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1	Back alignment and function description

>sp\|Q9SHH0\|CAAT8_ARATH Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=1 SV=1	Back alignment and function description

>sp\|Q9LZ20\|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana GN=CAT6 PE=2 SV=1	Back alignment and function description

>sp\|Q9SQZ0\|CAAT7_ARATH Cationic amino acid transporter 7, chloroplastic OS=Arabidopsis thaliana GN=CAT7 PE=3 SV=1	Back alignment and function description

>sp\|P70423\|CTR3_MOUSE Cationic amino acid transporter 3 OS=Mus musculus GN=Slc7a3 PE=2 SV=1	Back alignment and function description

>sp\|Q797A7\|YFNA_BACSU Uncharacterized amino acid permease YfnA OS=Bacillus subtilis (strain 168) GN=yfnA PE=3 SV=1	Back alignment and function description

>sp\|A8I499\|CTR2_PIG Low affinity cationic amino acid transporter 2 OS=Sus scrofa GN=SLC7A2 PE=2 SV=1	Back alignment and function description

>sp\|Q9C5D6\|CAAT9_ARATH Cationic amino acid transporter 9, chloroplastic OS=Arabidopsis thaliana GN=CAT9 PE=2 SV=1	Back alignment and function description

>sp\|B5D5N9\|CTR2_RAT Low affinity cationic amino acid transporter 2 OS=Rattus norvegicus GN=Slc7a2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		590
225423591		589	PREDICTED: uncharacterized amino acid pe	0.998	1.0	0.828	0.0
297738030		702	unnamed protein product [Vitis vinifera]	0.979	0.823	0.835	0.0
224072393		583	cationic amino acid transporter [Populus	0.983	0.994	0.814	0.0
284519838		589	cationic amino acid transporter 5 [Popul	0.998	1.0	0.803	0.0
449454782		588	PREDICTED: cationic amino acid transport	0.993	0.996	0.814	0.0
356530119		589	PREDICTED: uncharacterized amino acid pe	0.969	0.971	0.767	0.0
356532612		585	PREDICTED: uncharacterized amino acid pe	0.969	0.977	0.769	0.0
15226868		569	cationic amino acid transporter 5 [Arabi	0.957	0.992	0.793	0.0
297826969		569	hypothetical protein ARALYDRAFT_482460 [	0.954	0.989	0.794	0.0
357449157		578	High affinity cationic amino acid transp	0.967	0.987	0.702	0.0

>gi\|225423591\|ref\|XP_002273828.1\| PREDICTED: uncharacterized amino acid permease YfnA [Vitis vinifera]	Back alignment and taxonomy information

 Score =  988 bits (2553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/590 (82%), Positives = 529/590 (89%), Gaps = 1/590 (0%)

Query: 1   MGSTGEQGAEVQQRSYWRWSKQDFLPEESFQSWGNYKHALSQTHFRFMDRLISRSHDGNE 60
           MGS GE G E+Q R YWRWSKQDFLPEESF++W +Y+ ALSQT FRF DRL SRS D  E
Sbjct: 1   MGSMGEVGDEIQPRGYWRWSKQDFLPEESFKNWASYRSALSQTCFRFKDRLTSRSEDAIE 60

Query: 61  ICELRKQSENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVS 120
           I E+RKQSENDMKRCLTWWDLTWFGFG+VIGAGIFVLTGQEAH HAGPAIVLSYVASGVS
Sbjct: 61  IGEMRKQSENDMKRCLTWWDLTWFGFGSVIGAGIFVLTGQEAHDHAGPAIVLSYVASGVS 120

Query: 121 AMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYF 180
           A+LSVFCYTEFA+EIPVAGGSFAYLRIELGDFAAFITAGNILLESIVG A VARAWTSYF
Sbjct: 121 ALLSVFCYTEFAVEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGSAGVARAWTSYF 180

Query: 181 TTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVV 240
           TTLLNR  NSLRIHTNL +GYNLLDPIAVAVLA AAT+A ISTRKTSV NWIASAINTVV
Sbjct: 181 TTLLNRPTNSLRIHTNLTKGYNLLDPIAVAVLAIAATLAMISTRKTSVFNWIASAINTVV 240

Query: 241 ILFVIIVGFAHADASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIP 300
           ILFVII GFA+AD SNL PFLP+G++GIF+AAA+VYFAYGGFDNIATMAEETKNPSRDIP
Sbjct: 241 ILFVIIAGFANADPSNLTPFLPYGAKGIFQAAAIVYFAYGGFDNIATMAEETKNPSRDIP 300

Query: 301 IGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGM 360
           +GLLGSMS+IT+IYCLMAL+L +MQ Y DID  AAYS+AFQ VGMKWAKYLVALGALKGM
Sbjct: 301 LGLLGSMSIITVIYCLMALALSMMQDYRDIDRQAAYSLAFQSVGMKWAKYLVALGALKGM 360

Query: 361 TTVLLVGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDI 420
           TTVLLVGALG ARY THIARAHMIPPWFALVHPKTGTPINA LLIV++SALIA FS LD+
Sbjct: 361 TTVLLVGALGQARYVTHIARAHMIPPWFALVHPKTGTPINATLLIVISSALIAFFSSLDV 420

Query: 421 LSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNLLMLVIFLLIIIASSAGISAYWGLK 480
           L++LLS+STLFVFMMMAVALLVRRYYV  +TPR NLL LVIFLLII+ASS G SAYWGL 
Sbjct: 421 LASLLSVSTLFVFMMMAVALLVRRYYVTGVTPRINLLKLVIFLLIIVASSMGTSAYWGLN 480

Query: 481 PNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSLGYQ 540
           PNGWVGY IT+PLW LGT GISV LPQQRTPK WGVPLVPWLPSLSIATN+FLMGSL  +
Sbjct: 481 PNGWVGYAITIPLWVLGTAGISVFLPQQRTPKVWGVPLVPWLPSLSIATNLFLMGSLESK 540

Query: 541 AFVRFGICTLVMLVYYFFFGLHATYDMAHQQHGPGPLKDNDEDTIGKAEP 590
           AF+RFG+CT++MLVYY FFGLHATYD+AHQQ  P  LK ND D +GK  P
Sbjct: 541 AFIRFGVCTVLMLVYYVFFGLHATYDVAHQQQKPESLKFNDGD-MGKTGP 589

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297738030\|emb\|CBI27231.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224072393\|ref\|XP_002303714.1\| cationic amino acid transporter [Populus trichocarpa] gi\|222841146\|gb\|EEE78693.1\| cationic amino acid transporter [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|284519838\|gb\|ADB92669.1\| cationic amino acid transporter 5 [Populus tremula x Populus alba]	Back alignment and taxonomy information

>gi\|449454782\|ref\|XP_004145133.1\| PREDICTED: cationic amino acid transporter 5-like [Cucumis sativus] gi\|449474435\|ref\|XP_004154172.1\| PREDICTED: cationic amino acid transporter 5-like [Cucumis sativus] gi\|449503347\|ref\|XP_004161957.1\| PREDICTED: cationic amino acid transporter 5-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356530119\|ref\|XP_003533631.1\| PREDICTED: uncharacterized amino acid permease YfnA-like [Glycine max]	Back alignment and taxonomy information

>gi\|356532612\|ref\|XP_003534865.1\| PREDICTED: uncharacterized amino acid permease YfnA-like [Glycine max]	Back alignment and taxonomy information

>gi\|15226868\|ref\|NP_181041.1\| cationic amino acid transporter 5 [Arabidopsis thaliana] gi\|75278307\|sp\|O64759.1\|CAAT5_ARATH RecName: Full=Cationic amino acid transporter 5 gi\|3033391\|gb\|AAC12835.1\| putative amino acid transporter [Arabidopsis thaliana] gi\|330253949\|gb\|AEC09043.1\| cationic amino acid transporter 5 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297826969\|ref\|XP_002881367.1\| hypothetical protein ARALYDRAFT_482460 [Arabidopsis lyrata subsp. lyrata] gi\|297327206\|gb\|EFH57626.1\| hypothetical protein ARALYDRAFT_482460 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357449157\|ref\|XP_003594855.1\| High affinity cationic amino acid transporter [Medicago truncatula] gi\|355483903\|gb\|AES65106.1\| High affinity cationic amino acid transporter [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		590
TAIR\|locus:2044682		569	CAT5 "AT2G34960" [Arabidopsis	0.957	0.992	0.713	5e-218
TAIR\|locus:2020387		590	CAT8 "cationic amino acid tran	0.945	0.945	0.564	6.7e-175
TAIR\|locus:2127398		594	AAT1 "AT4G21120" [Arabidopsis	0.930	0.924	0.585	1.7e-171
TAIR\|locus:2175488		583	CAT6 "AT5G04770" [Arabidopsis	0.922	0.933	0.373	5.8e-98
TAIR\|locus:2075745		584	CAT7 "cationic amino acid tran	0.923	0.933	0.365	7.4e-98
DICTYBASE\|DDB_G0279983		766	ctrB "solute carrier family 7	0.825	0.635	0.324	1.1e-69
ZFIN\|ZDB-GENE-030919-2		677	slc7a4 "solute carrier family	0.633	0.552	0.329	4.8e-62
MGI\|MGI:2146512		635	Slc7a4 "solute carrier family	0.655	0.609	0.320	9.9e-62
WB\|WBGene00017747		583	F23F1.6 [Caenorhabditis elegan	0.638	0.646	0.324	5.4e-61
UNIPROTKB\|O43246		635	SLC7A4 "Cationic amino acid tr	0.633	0.588	0.322	5.4e-61

TAIR\|locus:2044682 CAT5 "AT2G34960" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2106 (746.4 bits), Expect = 5.0e-218, P = 5.0e-218
 Identities = 404/566 (71%), Positives = 445/566 (78%)

Query:    10 EVQQRSYWRWSKQDFLPEESFQSWGNYKHALSQTHFRFMDRLISRSHDGNEICELRKQSE 69
             E ++R YWRWSK+DF PEESFQS+G+Y+ ALSQT  RF +RL+SRS D NE  EL+KQSE
Sbjct:     2 EGEERGYWRWSKRDFFPEESFQSFGSYRAALSQTCSRFKNRLVSRSDDENERFELKKQSE 61

Query:    70 NDMKRCLTWWDLTWXXXXXXXXXXXXXLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYT 129
             ++MKRCLTWWDL W             LTGQEAH+ AGPAIVLSYV SG+SAMLSVFCYT
Sbjct:    62 HEMKRCLTWWDLVWFGFGSVIGAGIFVLTGQEAHEQAGPAIVLSYVVSGLSAMLSVFCYT 121

Query:   130 EFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPN 189
             EFA+EIPVAGGSFAYLRIELGDFAAFITAGNILLESIVG AAVARAWTSYF TLLNR PN
Sbjct:   122 EFAVEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGTAAVARAWTSYFATLLNRSPN 181

Query:   190 SLRIHTNLREGYNLLDPXXXXXXXXXXXXXXXXXRKTSVLNWIASAINTVVILFVIIVGF 249
             +LRI T+L  G+NLLDP                 RKTS+LNWIASAINT+VI FVII GF
Sbjct:   182 ALRIKTDLSSGFNLLDPIAVVVIAASATIASISTRKTSLLNWIASAINTLVIFFVIIAGF 241

Query:   250 AHADASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSM 309
              HAD SNL PFLPFG EG+F+AAAVVYFAYGGFD+IATMAEETKNPSRDIPIGLLGSMS+
Sbjct:   242 IHADTSNLTPFLPFGPEGVFRAAAVVYFAYGGFDSIATMAEETKNPSRDIPIGLLGSMSI 301

Query:   310 ITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGAL 369
             IT+IYCLMALSL +MQ YTDIDPNAAYSVAFQ VGMKW KYLVALGALKGMTTVLLVGAL
Sbjct:   302 ITVIYCLMALSLSMMQKYTDIDPNAAYSVAFQSVGMKWGKYLVALGALKGMTTVLLVGAL 361

Query:   370 GNARYTTHIARAHMIPPWFALVHPKTGTPXXXXXXXXXXXXXXXXFSGLDILSALLSLST 429
             G ARY THIAR HMIPP FALVHPKTGTP                FSGLD+L++LLS+ST
Sbjct:   362 GQARYVTHIARTHMIPPIFALVHPKTGTPINANLLVAIPSALIAFFSGLDVLASLLSIST 421

Query:   430 LFVFMMMAVALLVRRYYVREITPRKNXXXXXXXXXXXXXXXXXXXXYWGLKPNG-WVGYV 488
             LF+F MM +ALLVRRYYVR+ TPR +                    YWG++  G W+GY 
Sbjct:   422 LFIFTMMPIALLVRRYYVRQDTPRVHLIKLITCLLFVVVSSMGTSAYWGMQRKGSWIGYT 481

Query:   489 ITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGIC 548
             +TVP WFLGTLGI   +PQQRTPK WGVPLVPWLP LSIATNIFLMGSLG  AFVRFG+C
Sbjct:   482 VTVPFWFLGTLGIVFFVPQQRTPKVWGVPLVPWLPCLSIATNIFLMGSLGAMAFVRFGVC 541

Query:   549 TLVMLVYYFFFGLHATYDMAHQQHGP 574
             TL ML+YYF  GLHAT+DMAHQQ  P
Sbjct:   542 TLAMLLYYFLLGLHATFDMAHQQIVP 567

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0005313 "L-glutamate transmembrane transporter activity" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0015181 "arginine transmembrane transporter activity" evidence=IGI

GO:0015189 "L-lysine transmembrane transporter activity" evidence=IGI

GO:0043091 "L-arginine import" evidence=IGI

GO:0051938 "L-glutamate import" evidence=IGI

TAIR\|locus:2020387 CAT8 "cationic amino acid transporter 8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2127398 AAT1 "AT4G21120" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2175488 CAT6 "AT5G04770" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2075745 CAT7 "cationic amino acid transporter 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0279983 ctrB "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030919-2 slc7a4 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:2146512 Slc7a4 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

WB\|WBGene00017747 F23F1.6 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|O43246 SLC7A4 "Cationic amino acid transporter 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O64759	CAAT5_ARATH	No assigned EC number	0.7932	0.9576	0.9929	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		590
TIGR00906		557	TIGR00906, 2A0303, cationic amino acid transport p	0.0
TIGR00909		429	TIGR00909, 2A0306, amino acid transporter	3e-67
COG0531		466	COG0531, PotE, Amino acid transporters [Amino acid	5e-52
pfam13520		425	pfam13520, AA_permease_2, Amino acid permease	3e-37
TIGR00911		501	TIGR00911, 2A0308, L-type amino acid transporter	1e-24
pfam00324		473	pfam00324, AA_permease, Amino acid permease	7e-24
COG1113		462	COG1113, AnsP, Gamma-aminobutyrate permease and re	5e-17
COG0833		541	COG0833, LysP, Amino acid transporters [Amino acid	4e-16
pfam13906		51	pfam13906, AA_permease_C, C-terminus of AA_permeas	8e-16
PRK11357		445	PRK11357, frlA, putative fructoselysine transporte	2e-15
TIGR00908		442	TIGR00908, 2A0305, ethanolamine permease	2e-15
PRK10249		458	PRK10249, PRK10249, phenylalanine transporter; Pro	7e-12
TIGR03428		475	TIGR03428, ureacarb_perm, permease, urea carboxyla	8e-11
TIGR00913		478	TIGR00913, 2A0310, amino acid permease (yeast)	4e-10
PRK10238		456	PRK10238, PRK10238, aromatic amino acid transporte	4e-10
PRK10580		457	PRK10580, proY, putative proline-specific permease	1e-08
PRK10644		445	PRK10644, PRK10644, arginine:agmatin antiporter; P	2e-08
TIGR03810		468	TIGR03810, arg_ornith_anti, arginine-ornithine ant	4e-08
TIGR00905		473	TIGR00905, 2A0302, transporter, basic amino acid/p	5e-08
TIGR01773		452	TIGR01773, GABAperm, gamma-aminobutyrate permease	1e-07
TIGR03813		474	TIGR03813, put_Glu_GABA_T, putative glutamate/gamm	1e-07
PRK11387		471	PRK11387, PRK11387, S-methylmethionine transporter	2e-07
PRK11021		410	PRK11021, PRK11021, putative transporter; Provisio	3e-07
TIGR04299		430	TIGR04299, antiport_PotE, putrescine-ornithine ant	1e-06
TIGR00907		482	TIGR00907, 2A0304, amino acid permease (GABA perme	3e-06
pfam01490		406	pfam01490, Aa_trans, Transmembrane amino acid tran	1e-04
COG0814		415	COG0814, SdaC, Amino acid permeases [Amino acid tr	3e-04
PRK10655		438	PRK10655, potE, putrescine transporter; Provisiona	3e-04
PRK15238		496	PRK15238, PRK15238, inner membrane transporter Yje	0.002
TIGR00910		507	TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyr	0.003
COG0344		200	COG0344, COG0344, Predicted membrane protein [Func	0.003

>gnl\|CDD\|129984 TIGR00906, 2A0303, cationic amino acid transport permease	Back alignment and domain information

 Score =  530 bits (1366), Expect = 0.0
 Identities = 202/544 (37%), Positives = 301/544 (55%), Gaps = 37/544 (6%)

Query: 60  EICELRKQSENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGV 119
           +I +L  + E+ MKRCLT WDL   G G+ IGAGI+VLTG+ A   +GPAIVLS++ SG+
Sbjct: 14  KIVDLDSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGL 73

Query: 120 SAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSY 179
           +A+LS FCY EF   +P AG ++ Y  + +G+  AFIT  N++LE ++G AAVAR+W++Y
Sbjct: 74  AAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAY 133

Query: 180 FTTLLNREP-NSLRIHTNLREGY--NLLDPIAVAVLATAATIASISTRKTSVLNWIASAI 236
           F  LLN++     R +  L         D  AV ++   A + S   ++++ +N I +AI
Sbjct: 134 FDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAI 193

Query: 237 NTVVILFVIIVGFAHADASNLKP--------FLPFGSEGIFKAAAVVYFAYGGFDNIATM 288
           N +V+LFVII GF  AD +N           F+P+G  G+   AA  +FA+ GFD IAT 
Sbjct: 194 NILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATT 253

Query: 289 AEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWA 348
            EE KNP R IPIG++ S+ +  + Y LM+ +L +M PY  +DP+A + VAF+ VG   A
Sbjct: 254 GEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPA 313

Query: 349 KYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLA 408
           KY+VA+GAL GM+T LL G     R    +AR  ++  W A ++ KT TPINA ++    
Sbjct: 314 KYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAI 373

Query: 409 SALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREI------TPRKNLL----- 457
           +AL+A    L  L  LLS+ TL  + ++A  +L+ RY    +      T  K+ L     
Sbjct: 374 AALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVP 433

Query: 458 -------------MLVIFLLIIIASSAGISAYW-GLKPNGW-VGYVITVPLWFLGTLGIS 502
                        +  +F  +I+  S   +     +    W +  +    + FL  +   
Sbjct: 434 FTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTI 493

Query: 503 VLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGICTLVMLVYYFFFGLH 562
              PQ +    + VPLVP+LP+LSI  NIFLM  L    +VRF I   +  + YF +G+ 
Sbjct: 494 WRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIR 553

Query: 563 ATYD 566
            + +
Sbjct: 554 HSLE 557

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557

>gnl\|CDD\|129987 TIGR00909, 2A0306, amino acid transporter	Back alignment and domain information

>gnl\|CDD\|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|222193 pfam13520, AA_permease_2, Amino acid permease	Back alignment and domain information

>gnl\|CDD\|233179 TIGR00911, 2A0308, L-type amino acid transporter	Back alignment and domain information

>gnl\|CDD\|215858 pfam00324, AA_permease, Amino acid permease	Back alignment and domain information

>gnl\|CDD\|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|206077 pfam13906, AA_permease_C, C-terminus of AA_permease	Back alignment and domain information

>gnl\|CDD\|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|129986 TIGR00908, 2A0305, ethanolamine permease	Back alignment and domain information

>gnl\|CDD\|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system	Back alignment and domain information

>gnl\|CDD\|233181 TIGR00913, 2A0310, amino acid permease (yeast)	Back alignment and domain information

>gnl\|CDD\|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|182566 PRK10580, proY, putative proline-specific permease; Provisional	Back alignment and domain information

>gnl\|CDD\|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional	Back alignment and domain information

>gnl\|CDD\|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter	Back alignment and domain information

>gnl\|CDD\|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family	Back alignment and domain information

>gnl\|CDD\|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease	Back alignment and domain information

>gnl\|CDD\|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter	Back alignment and domain information

>gnl\|CDD\|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|236823 PRK11021, PRK11021, putative transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter	Back alignment and domain information

>gnl\|CDD\|233178 TIGR00907, 2A0304, amino acid permease (GABA permease)	Back alignment and domain information

>gnl\|CDD\|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein	Back alignment and domain information

>gnl\|CDD\|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|182622 PRK10655, potE, putrescine transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|237929 PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	Back alignment and domain information

>gnl\|CDD\|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter	Back alignment and domain information

>gnl\|CDD\|223421 COG0344, COG0344, Predicted membrane protein [Function unknown]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		590
TIGR00906		557	2A0303 cationic amino acid transport permease.	100.0
PRK15049		499	L-asparagine permease; Provisional	100.0
COG0833		541	LysP Amino acid transporters [Amino acid transport	100.0
PRK11387		471	S-methylmethionine transporter; Provisional	100.0
PRK10746		461	putative transport protein YifK; Provisional	100.0
PRK10249		458	phenylalanine transporter; Provisional	100.0
COG1113		462	AnsP Gamma-aminobutyrate permease and related perm	100.0
TIGR00908		442	2A0305 ethanolamine permease. The three genes used	100.0
PRK10836		489	lysine transporter; Provisional	100.0
PRK11357		445	frlA putative fructoselysine transporter; Provisio	100.0
PRK10238		456	aromatic amino acid transporter; Provisional	100.0
TIGR00909		429	2A0306 amino acid transporter.	100.0
KOG1286		554	consensus Amino acid transporters [Amino acid tran	100.0
TIGR01773		452	GABAperm gamma-aminobutyrate permease. GabP is hig	100.0
PRK10655		438	potE putrescine transporter; Provisional	100.0
PRK10644		445	arginine:agmatin antiporter; Provisional	100.0
PRK10580		457	proY putative proline-specific permease; Provision	100.0
PRK11049		469	D-alanine/D-serine/glycine permease; Provisional	100.0
PRK10197		446	gamma-aminobutyrate transporter; Provisional	100.0
PRK10435		435	cadB lysine/cadaverine antiporter; Provisional	100.0
TIGR00911		501	2A0308 L-type amino acid transporter.	100.0
KOG1289		550	consensus Amino acid transporters [Amino acid tran	100.0
TIGR00913		478	2A0310 amino acid permease (yeast).	100.0
TIGR03428		475	ureacarb_perm permease, urea carboxylase system. A	100.0
TIGR00905		473	2A0302 transporter, basic amino acid/polyamine ant	100.0
KOG1287		479	consensus Amino acid transporters [Amino acid tran	100.0
PRK11021		410	putative transporter; Provisional	100.0
TIGR00907		482	2A0304 amino acid permease (GABA permease).	100.0
TIGR00930		953	2a30 K-Cl cotransporter.	100.0
TIGR03810		468	arg_ornith_anti arginine/ornithine antiporter. Mem	100.0
TIGR03813		474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	100.0
TIGR00910		507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	100.0
PF13520		426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	100.0
COG0531		466	PotE Amino acid transporters [Amino acid transport	100.0
PF00324		478	AA_permease: Amino acid permease; InterPro: IPR004	100.0
PRK15238		496	inner membrane transporter YjeM; Provisional	100.0
KOG2082		1075	consensus K+/Cl- cotransporter KCC1 and related tr	100.0
KOG1288		945	consensus Amino acid transporters [Amino acid tran	99.97
TIGR00837		381	araaP aromatic amino acid transport protein. aroma	99.97
KOG2083		643	consensus Na+/K+ symporter [Inorganic ion transpor	99.93
TIGR00912		359	2A0309 spore germination protein (amino acid perme	99.92
PHA02764		399	hypothetical protein; Provisional	99.86
TIGR00796		378	livcs branched-chain amino acid uptake carrier. tr	99.86
PF03222		394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.82
TIGR00814		397	stp serine transporter. The HAAAP family includes	99.79
PRK10483		414	tryptophan permease; Provisional	99.78
PRK09664		415	tryptophan permease TnaB; Provisional	99.76
PRK15132		403	tyrosine transporter TyrP; Provisional	99.74
COG0814		415	SdaC Amino acid permeases [Amino acid transport an	99.71
PF03845		320	Spore_permease: Spore germination protein; InterPr	99.68
PRK13629		443	threonine/serine transporter TdcC; Provisional	99.66
PF01235		416	Na_Ala_symp: Sodium:alanine symporter family; Inte	99.39
KOG1303		437	consensus Amino acid transporters [Amino acid tran	99.36
KOG1304		449	consensus Amino acid transporters [Amino acid tran	99.31
TIGR00835		425	agcS amino acid carrier protein. Members of the AG	99.3
PLN03074		473	auxin influx permease; Provisional	99.25
COG1115		452	AlsT Na+/alanine symporter [Amino acid transport a	99.24
PRK11375		484	allantoin permease; Provisional	99.22
PTZ00206		467	amino acid transporter; Provisional	99.18
COG1457		442	CodB Purine-cytosine permease and related proteins	99.03
COG3949		349	Uncharacterized membrane protein [Function unknown	99.01
PF13906		51	AA_permease_C: C-terminus of AA_permease	99.01
PRK11017		404	codB cytosine permease; Provisional	98.93
COG1953		497	FUI1 Cytosine/uracil/thiamine/allantoin permeases	98.82
PRK09442		483	panF sodium/panthothenate symporter; Provisional	98.8
PF01490		409	Aa_trans: Transmembrane amino acid transporter pro	98.73
TIGR00800		442	ncs1 NCS1 nucleoside transporter family. The NCS1	98.65
TIGR02121		487	Na_Pro_sym sodium/proline symporter. This family c	98.61
TIGR00813		407	sss transporter, SSS family. have different number	98.6
TIGR02119		471	panF sodium/pantothenate symporter. Pantothenate (	98.54
PRK10484		523	putative transporter; Provisional	98.44
PRK00701		439	manganese transport protein MntH; Reviewed	98.43
PRK15419		502	proline:sodium symporter PutP; Provisional	98.41
PRK12488		549	acetate permease; Provisional	98.4
PF00474		406	SSF: Sodium:solute symporter family; InterPro: IPR	98.38
COG0733		439	Na+-dependent transporters of the SNF family [Gene	98.35
PF05525		427	Branch_AA_trans: Branched-chain amino acid transpo	98.32
TIGR03648		552	Na_symport_lg probable sodium:solute symporter, VC	98.27
COG0591		493	PutP Na+/proline symporter [Amino acid transport a	98.25
TIGR02358		386	thia_cytX probable hydroxymethylpyrimidine transpo	98.23
TIGR02711		549	symport_actP cation/acetate symporter ActP. Member	98.22
KOG1305		411	consensus Amino acid transporter protein [Amino ac	98.2
PF01566		358	Nramp: Natural resistance-associated macrophage pr	98.16
PRK09395		551	actP acetate permease; Provisional	98.12
PLN00151		852	potassium transporter; Provisional	98.03
PF02705		534	K_trans: K+ potassium transporter; InterPro: IPR00	98.02
COG1914		416	MntH Mn2+ and Fe2+ transporters of the NRAMP famil	98.02
PF02133		440	Transp_cyt_pur: Permease for cytosine/purines, ura	97.91
PF02028		485	BCCT: BCCT family transporter; InterPro: IPR000060	97.75
COG4147		529	DhlC Predicted symporter [General function predict	97.65
PRK15433		439	branched-chain amino acid transport system 2 carri	97.56
PLN00150		779	potassium ion transporter family protein; Provisio	97.55
PLN00149		779	potassium transporter; Provisional	97.45
TIGR00794		688	kup potassium uptake protein. Proteins of the KUP	97.44
PRK10745		622	trkD potassium transport protein Kup; Provisional	97.39
PLN00148		785	potassium transporter; Provisional	97.38
COG1114		431	BrnQ Branched-chain amino acid permeases [Amino ac	97.18
PRK09928		679	choline transport protein BetT; Provisional	96.72
PRK09950		506	putative transporter; Provisional	96.66
COG4145		473	PanF Na+/panthothenate symporter [Coenzyme metabol	96.56
COG1292		537	BetT Choline-glycine betaine transporter [Cell env	96.51
KOG2466		572	consensus Uridine permease/thiamine transporter/al	96.49
COG3158		627	Kup K+ transporter [Inorganic ion transport and me	95.49
KOG4303		524	consensus Vesicular inhibitory amino acid transpor	95.26
PF00209		523	SNF: Sodium:neurotransmitter symporter family; Int	95.15
PRK03356		504	L-carnitine/gamma-butyrobetaine antiporter; Provis	94.86
TIGR00842		453	bcct choline/carnitine/betaine transport. properti	94.74
KOG1287		479	consensus Amino acid transporters [Amino acid tran	93.99
TIGR01197		390	nramp NRAMP (natural resistance-associated macroph	93.62
COG4146		571	Predicted symporter [General function prediction o	92.23
KOG3659		629	consensus Sodium-neurotransmitter symporter [Signa	91.99
PF05297		381	Herpes_LMP1: Herpesvirus latent membrane protein 1	90.67
KOG3660		629	consensus Sodium-neurotransmitter symporter [Signa	90.63
KOG2349		585	consensus Na+:iodide/myo-inositol/multivitamin sym	89.55
TIGR00910		507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	87.22
PF02554		376	CstA: Carbon starvation protein CstA; InterPro: IP	84.29
PRK15015		701	carbon starvation protein A; Provisional	84.22
PF12794		340	MscS_TM: Mechanosensitive ion channel inner membra	83.84
COG2271		448	UhpC Sugar phosphate permease [Carbohydrate transp	83.14
PF02667		453	SCFA_trans: Short chain fatty acid transporter; In	82.93

>TIGR00906 2A0303 cationic amino acid transport permease	Back alignment and domain information

Probab=100.00  E-value=1.5e-65  Score=551.09  Aligned_cols=496  Identities=40%  Similarity=0.639  Sum_probs=409.0

Q ss_pred             cccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHH
Q 040051           69 ENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIE  148 (590)
Q Consensus        69 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~  148 (590)
                      +++++|+++.+++++++++.++|+|+|..++..+...+||..+++|+++++..++.+++|+|+++++|++||.|.|+++.
T Consensus        23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~  102 (557)
T TIGR00906        23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVT  102 (557)
T ss_pred             ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHH
Confidence            45699999999999999999999999999998876558999999999999999999999999999999999999999999


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccc-ccc--ccccCchhHHHHHHHHHHHHHHhhchhh
Q 040051          149 LGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIH-TNL--REGYNLLDPIAVAVLATAATIASISTRK  225 (590)
Q Consensus       149 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~i~~~g~k~  225 (590)
                      +||.+||++||.++++|....+..+.+++.|+..+++.....+... ...  +........++++++++++.+|++|+|.
T Consensus       103 ~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~  182 (557)
T TIGR00906       103 VGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKE  182 (557)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhH
Confidence            9999999999999999999999999999999988775422111110 000  1000123467777888889999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC--------CCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCC
Q 040051          226 TSVLNWIASAINTVVILFVIIVGFAHADASNLK--------PFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSR  297 (590)
Q Consensus       226 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r  297 (590)
                      +++++.+++.++++.++++++.++.+.+.+|+.        ++.|+++.+++.++..++|+|.|+|++++++||+|||+|
T Consensus       183 s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r  262 (557)
T TIGR00906       183 SAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQR  262 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccc
Confidence            999999999999999988888888776666654        567778888999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 040051          298 DIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTH  377 (590)
Q Consensus       298 ~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~  377 (590)
                      |+|||++.++.+++++|++..+++...+|+++++.++|+..+++..+.++...++.++.+++.+++.++.+++.+|++|+
T Consensus       263 ~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~a  342 (557)
T TIGR00906       263 AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYA  342 (557)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988888889999999888889999999999999999999999999999999


Q ss_pred             HHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-c---
Q 040051          378 IARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITP-R---  453 (590)
Q Consensus       378 ~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~---  453 (590)
                      |||||.+|++|+|+|||+++|++|+++.++++.++.++.+++.+.++.+++.++.|.+.+++++++|++++.... +   
T Consensus       343 marDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~~~~  422 (557)
T TIGR00906       343 MARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDT  422 (557)
T ss_pred             HHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence            999999999999999999999999999999998888888999999999999999999999999998876421000 0   


Q ss_pred             ----------------------cchhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHH--HHHHHHHHHHHHHHhhccCCC
Q 040051          454 ----------------------KNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYV--ITVPLWFLGTLGISVLLPQQR  509 (590)
Q Consensus       454 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  509 (590)
                                            .+..... ....+.+ ...+...+..-...++...  ....++.+..+.....+++.+
T Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (557)
T TIGR00906       423 DEKDTLDSWVPFTSKSESQSEGFSLRTLF-SGLILGL-SILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNK  500 (557)
T ss_pred             cccccccccccccccccccccchhHHHHH-HHHHHHH-HHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence                                  0011111 1111111 1112222221111222222  222222333333333334434


Q ss_pred             CCCccccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhccccc
Q 040051          510 TPKTWGVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGICTLVMLVYYFFFGLHATYD  566 (590)
Q Consensus       510 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~  566 (590)
                      .+++||+|.+|++|.+++..|++++.+++..+|+.+.+|+++|+++|+.|++||+++
T Consensus       501 ~~~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~  557 (557)
T TIGR00906       501 QKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE  557 (557)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence            489999999999999999999999999999999999999999999999999999874

>PRK15049 L-asparagine permease; Provisional	Back alignment and domain information

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>PRK11387 S-methylmethionine transporter; Provisional	Back alignment and domain information

>PRK10746 putative transport protein YifK; Provisional	Back alignment and domain information

>PRK10249 phenylalanine transporter; Provisional	Back alignment and domain information

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00908 2A0305 ethanolamine permease	Back alignment and domain information

>PRK10836 lysine transporter; Provisional	Back alignment and domain information

>PRK11357 frlA putative fructoselysine transporter; Provisional	Back alignment and domain information

>PRK10238 aromatic amino acid transporter; Provisional	Back alignment and domain information

>TIGR00909 2A0306 amino acid transporter	Back alignment and domain information

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR01773 GABAperm gamma-aminobutyrate permease	Back alignment and domain information

>PRK10655 potE putrescine transporter; Provisional	Back alignment and domain information

>PRK10644 arginine:agmatin antiporter; Provisional	Back alignment and domain information

>PRK10580 proY putative proline-specific permease; Provisional	Back alignment and domain information

>PRK11049 D-alanine/D-serine/glycine permease; Provisional	Back alignment and domain information

>PRK10197 gamma-aminobutyrate transporter; Provisional	Back alignment and domain information

>PRK10435 cadB lysine/cadaverine antiporter; Provisional	Back alignment and domain information

>TIGR00911 2A0308 L-type amino acid transporter	Back alignment and domain information

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00913 2A0310 amino acid permease (yeast)	Back alignment and domain information

>TIGR03428 ureacarb_perm permease, urea carboxylase system	Back alignment and domain information

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family	Back alignment and domain information

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>PRK11021 putative transporter; Provisional	Back alignment and domain information

>TIGR00907 2A0304 amino acid permease (GABA permease)	Back alignment and domain information

>TIGR00930 2a30 K-Cl cotransporter	Back alignment and domain information

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter	Back alignment and domain information

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter	Back alignment and domain information

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter	Back alignment and domain information

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A	Back alignment and domain information

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>PRK15238 inner membrane transporter YjeM; Provisional	Back alignment and domain information

>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00837 araaP aromatic amino acid transport protein	Back alignment and domain information

>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00912 2A0309 spore germination protein (amino acid permease)	Back alignment and domain information

>PHA02764 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00796 livcs branched-chain amino acid uptake carrier	Back alignment and domain information

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>TIGR00814 stp serine transporter	Back alignment and domain information

>PRK10483 tryptophan permease; Provisional	Back alignment and domain information

>PRK09664 tryptophan permease TnaB; Provisional	Back alignment and domain information

>PRK15132 tyrosine transporter TyrP; Provisional	Back alignment and domain information

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]	Back alignment and domain information

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>PRK13629 threonine/serine transporter TdcC; Provisional	Back alignment and domain information

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups	Back alignment and domain information

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00835 agcS amino acid carrier protein	Back alignment and domain information

>PLN03074 auxin influx permease; Provisional	Back alignment and domain information

>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PRK11375 allantoin permease; Provisional	Back alignment and domain information

>PTZ00206 amino acid transporter; Provisional	Back alignment and domain information

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]	Back alignment and domain information

>COG3949 Uncharacterized membrane protein [Function unknown]	Back alignment and domain information

>PF13906 AA_permease_C: C-terminus of AA_permease	Back alignment and domain information

>PRK11017 codB cytosine permease; Provisional	Back alignment and domain information

>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>PRK09442 panF sodium/panthothenate symporter; Provisional	Back alignment and domain information

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)	Back alignment and domain information

>TIGR00800 ncs1 NCS1 nucleoside transporter family	Back alignment and domain information

>TIGR02121 Na_Pro_sym sodium/proline symporter	Back alignment and domain information

>TIGR00813 sss transporter, SSS family	Back alignment and domain information

>TIGR02119 panF sodium/pantothenate symporter	Back alignment and domain information

>PRK10484 putative transporter; Provisional	Back alignment and domain information

>PRK00701 manganese transport protein MntH; Reviewed	Back alignment and domain information

>PRK15419 proline:sodium symporter PutP; Provisional	Back alignment and domain information

>PRK12488 acetate permease; Provisional	Back alignment and domain information

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells	Back alignment and domain information

>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]	Back alignment and domain information

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))	Back alignment and domain information

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily	Back alignment and domain information

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]	Back alignment and domain information

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX	Back alignment and domain information

>TIGR02711 symport_actP cation/acetate symporter ActP	Back alignment and domain information

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]	Back alignment and domain information

>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2	Back alignment and domain information

>PRK09395 actP acetate permease; Provisional	Back alignment and domain information

>PLN00151 potassium transporter; Provisional	Back alignment and domain information

>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members	Back alignment and domain information

>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines	Back alignment and domain information

>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom	Back alignment and domain information

>COG4147 DhlC Predicted symporter [General function prediction only]	Back alignment and domain information

>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional	Back alignment and domain information

>PLN00150 potassium ion transporter family protein; Provisional	Back alignment and domain information

>PLN00149 potassium transporter; Provisional	Back alignment and domain information

>TIGR00794 kup potassium uptake protein	Back alignment and domain information

>PRK10745 trkD potassium transport protein Kup; Provisional	Back alignment and domain information

>PLN00148 potassium transporter; Provisional	Back alignment and domain information

>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]	Back alignment and domain information

>PRK09928 choline transport protein BetT; Provisional	Back alignment and domain information

>PRK09950 putative transporter; Provisional	Back alignment and domain information

>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]	Back alignment and domain information

>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]	Back alignment and domain information

>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses	Back alignment and domain information

>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional	Back alignment and domain information

>TIGR00842 bcct choline/carnitine/betaine transport	Back alignment and domain information

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters	Back alignment and domain information

>COG4146 Predicted symporter [General function prediction only]	Back alignment and domain information

>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]	Back alignment and domain information

>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)	Back alignment and domain information

>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]	Back alignment and domain information

>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter	Back alignment and domain information

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex	Back alignment and domain information

>PRK15015 carbon starvation protein A; Provisional	Back alignment and domain information

>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1	Back alignment and domain information

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		590
3gi9_C		444	Crystal Structure Of Apct Transporter Bound To 7f11		2e-06
3gi8_C		444	Crystal Structure Of Apct K158a Transporter Bound T		4e-06

>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444

Back alignment and structure

Iteration: 1

Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/291 (21%), Positives = 121/291 (41%), Gaps = 19/291 (6%) Query: 104 KHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFIT-AGNIL 162 K AG + +++ SG+ A+L + YT+ +I G A++ +GD IT A +IL Sbjct: 35 KIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGD--NIITGALSIL 92 Query: 163 L--ESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPXXXXXXXXXXXXXX 220 L ++ A A+ + YF L+N N+ I Sbjct: 93 LWMSYVISIALFAKGFAGYFLPLINAPINTFNIAIT-----------EIGIVAFFTALNF 141 Query: 221 XXXRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFL-PFGSEGIFKAAAVVYFAY 279 + + + +++ I G S + P L P G+ A+A+ + +Y Sbjct: 142 FGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSY 201 Query: 280 GGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNA--AYS 337 GF I +E +NP +++P + S+ ++ +Y +A+S P ++ + A + Sbjct: 202 MGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALA 261 Query: 338 VAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWF 388 VA + L+++GAL +++ + G A +A+ +P +F Sbjct: 262 VAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFF 312

PyMOL of 3gi9

>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		590
3gia_A		444	Uncharacterized protein MJ0609; membrane protein,	1e-107
3l1l_A		445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	4e-66
4djk_A		511	Probable glutamate/gamma-aminobutyrate antiporter;	1e-65
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444	Back alignment and structure

 Score =  328 bits (843), Expect = e-107
 Identities = 74/436 (16%), Positives = 172/436 (39%), Gaps = 27/436 (6%)

Query: 70  NDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYT 129
               + L+ W+      G +IGA IF + G  A K AG  +  +++ SG+ A+L  + YT
Sbjct: 2   ELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLVAYSYT 60

Query: 130 EFAIEIPVAGGSFAYLRIELGD-FAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREP 188
           +   +I    G  A++   +GD       +  + +  ++  A  A+ +  YF  L+N   
Sbjct: 61  KLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPI 120

Query: 189 NSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVG 248
           N+  I               + ++A    +    ++      +    +  +++   I  G
Sbjct: 121 NTFNI-----------AITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAG 169

Query: 249 FAHADASNLKP-FLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSM 307
                 S + P   P    G+  A+A+ + +Y GF  I   +E  +NP +++P  +  S+
Sbjct: 170 LITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISI 229

Query: 308 SMITIIYCLMALSLCVMQPYTDIDPNAAYSV--AFQRVGMKWAKYLVALGALKGMTTVLL 365
            ++  +Y  +A+S     P  ++   +  ++  A +         L+++GAL  +++ + 
Sbjct: 230 LIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMN 289

Query: 366 VGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALL 425
               G A     +A+   +P +F               +      L AL   ++ ++++ 
Sbjct: 290 ATIYGGANVAYSLAKDGELPEFFERKVWF--KSTEGLYITSALGVLFALLFNMEGVASIT 347

Query: 426 SLSTLFVFMMMAVALLVRRYYVREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWV 485
           S   + +++ + ++  +      E+  RK +++    +++ +        Y  +      
Sbjct: 348 SAVFMVIYLFVILSHYILI---DEVGGRKEIVIFSFIVVLGVFLLLLY--YQWITNRFVF 402

Query: 486 GYVITVPLWFLGTLGI 501
             +I         + I
Sbjct: 403 YGII----ATFIGVLI 414

PyMOL of 3gia

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445	Back alignment and structure

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		590
3l1l_A		445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	100.0
3gia_A		444	Uncharacterized protein MJ0609; membrane protein,	100.0
4djk_A		511	Probable glutamate/gamma-aminobutyrate antiporter;	100.0
2jln_A		501	MHP1; hydantoin, transporter, membrane protein, nu	99.41
3dh4_A		530	Sodium/glucose cotransporter; membrane protein, sy	98.88
2xq2_A		593	Sodium/glucose cotransporter; transport protein, i	98.83
2a65_A		519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	97.87
2wsw_A		509	BCCT family betaine/carnitine/choline transporter;	95.69
4ain_A		539	Glycine betaine transporter BETP; membrane protein	95.23

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A	Back alignment and structure

Probab=100.00  E-value=4.3e-52  Score=441.05  Aligned_cols=417  Identities=18%  Similarity=0.254  Sum_probs=355.4

Q ss_pred             ccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHh
Q 040051           70 NDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIEL  149 (590)
Q Consensus        70 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~  149 (590)
                      +++||++++++.+++.++.++|+|+|..++.. .. +|+.++++|++++++.++.+++++|+++++|++||.|+|+++.+
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~-~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~   81 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-AS-TGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF   81 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HH-HCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HH-hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence            34689999999999999999999999998874 34 78888999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHH
Q 040051          150 GDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVL  229 (590)
Q Consensus       150 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~  229 (590)
                      ||.+|++.||.+++++....+.+...++++++.+++.....+           ...+++++++++.+.+|++|+|..+++
T Consensus        82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~in~~g~~~~~~~  150 (445)
T 3l1l_A           82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPW-----------VLTITCVVVLWIFVLLNIVGPKMITRV  150 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHH-----------HHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccH-----------HHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            999999999999999999999999999988876654211111           144678888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCCCC-CCCCCC---hhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHH
Q 040051          230 NWIASAINTVVILFVIIVGFAHADASNLK-PFLPFG---SEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLG  305 (590)
Q Consensus       230 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~  305 (590)
                      +.+++.++++.++++++.++.+.+.+++. ++.+.+   +.+++.++...+|+|.|+|..++++||+|||+|++||++..
T Consensus       151 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~  230 (445)
T 3l1l_A          151 QAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIG  230 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHH
Confidence            99999999999988888887766655543 333333   55788889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCC-CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCC
Q 040051          306 SMSMITIIYCLMALSLCVMQPYTDID-PNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMI  384 (590)
Q Consensus       306 ~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~l  384 (590)
                      +..+++++|++..++.....|.+++. .+.|+.++++..++++...++.+..+++.+++.++.+++.+|++++|||||.+
T Consensus       231 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~l  310 (445)
T 3l1l_A          231 GVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLF  310 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999988774 45699999998888899999999999999999999999999999999999999


Q ss_pred             chhhhccCCCCCCchHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchh
Q 040051          385 PPWFALVHPKTGTPINANLLIVLASALIALF-------SGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNLL  457 (590)
Q Consensus       385 P~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  457 (590)
                      |++|+|+| |+++|+++++++.+++.++.+.       ..++.+.++.+.+.++.|.+.+++++++|+|+| ++      
T Consensus       311 P~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~------  382 (445)
T 3l1l_A          311 PPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GK------  382 (445)
T ss_dssp             CGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GG------
T ss_pred             cHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc------
Confidence            99999999 6799999999999988766654       247899999999999999999999999887755 11      


Q ss_pred             HHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHhcC
Q 040051          458 MLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSL  537 (590)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  537 (590)
                                                                               |.|..++++.++.+.+++++...
T Consensus       383 ---------------------------------------------------------r~~~~~~~~~~~~~~~~~~~~~~  405 (445)
T 3l1l_A          383 ---------------------------------------------------------ARPAYLAVTTIAFLYCIWAVVGS  405 (445)
T ss_dssp             ---------------------------------------------------------GCTTTHHHHHHHHHHHHHHHHHS
T ss_pred             ---------------------------------------------------------ccchhHHHHHHHHHHHHHHHHHc
Confidence                                                                     11245667778888888877777


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHhhccc
Q 040051          538 GYQAFVRFGICTLVMLVYYFFFGLHAT  564 (590)
Q Consensus       538 ~~~~~~~~~~~~~i~~~~y~~~~~~~~  564 (590)
                      ++.......+++++|+.+|+.++||++
T Consensus       406 ~~~~~~~~~~~~~~g~~~y~~~~~~~~  432 (445)
T 3l1l_A          406 GAKEVMWSFVTLMVITAMYALNYNRLH  432 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            887888888999999999987776643

PyMOL of 3l1l

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C	Back alignment and structure

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A	Back alignment and structure

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A	Back alignment and structure

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}	Back alignment and structure

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A	Back alignment and structure

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...	Back alignment and structure

>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*	Back alignment and structure

>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		590
d2a65a1		509	Na(+):neurotransmitter symporter homologue LeuT {A	97.45

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.45  E-value=0.026  Score=57.13  Aligned_cols=40  Identities=25%  Similarity=0.371  Sum_probs=28.5

Q ss_pred             CHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHH
Q 040051           77 TWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVA  116 (590)
Q Consensus        77 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll  116 (590)
                      +..+.+.-++|..+|.|-+-+.++.....||..-++.|++
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~   45 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYII   45 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHH
Confidence            3566677788889999988888888777566554444443

PyMOL of d2a65a1