Citrus Sinensis ID: 040065

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPSMW
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHccccccEccccc
Coil and Loop (DISEMBL)
dvlitpftcdrtgsGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWtigavrgfptesatqnlkeqvyvpsmw
Flexible Loop (DISEMBL)
dvlitpftcdrtgsgdAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRgfptesatqnlkeqvyvpsmw
Low Complexity Region (SEG)
DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPSMW
Disordered region (IsUnstruct)
**LITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPT*****************
Disordered Region (DISOPRED)
*VLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPSMW
Disordered Region (DISEMBL)
DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPSMW
Disordered Region (DISPRO)
**LITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPSMW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
A2WXV8	323	Fructokinase-1 OS=Oryza s	N/A	no	0.792	0.201	0.384	6e-06
Q0JGZ6	323	Fructokinase-1 OS=Oryza s	no	no	0.804	0.204	0.378	9e-06
P37829	319	Fructokinase OS=Solanum t	N/A	no	0.792	0.203	0.384	2e-05
Q6XZ78	335	Fructokinase-2 OS=Zea may	N/A	no	0.792	0.194	0.353	3e-05
Q9M1B9	326	Probable fructokinase-4 O	no	no	0.841	0.211	0.375	5e-05
Q0J8G4	336	Fructokinase-2 OS=Oryza s	no	no	0.792	0.193	0.353	6e-05
A2YQL4	336	Fructokinase-2 OS=Oryza s	N/A	no	0.792	0.193	0.353	6e-05
Q9SID0	325	Probable fructokinase-1 O	no	no	0.878	0.221	0.306	7e-05
Q6XZ79	323	Fructokinase-1 OS=Zea may	N/A	no	0.804	0.204	0.348	9e-05
Q42896	328	Fructokinase-2 OS=Solanum	N/A	no	0.792	0.198	0.369	0.0001

>sp|A2WXV8|SCRK1_ORYSI Fructokinase-1 OS=Oryza sativa subsp. indica GN=FRK1 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%)

Query: 10  DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESAT 69
           D TG+GDA V A+LR++   P   ++Q  L+  ++FA A G I     GA+   PTE   
Sbjct: 257 DTTGAGDAFVGALLRRIVQDPSSLQDQKKLEEAIKFANACGAITATKKGAIPSLPTEVEV 316

Query: 70  QNLKE 74
             L E
Sbjct: 317 LKLME 321

May play an important role in maintaining the flux of carbon towards starch formation. May also be involved in a sugar-sensing pathway.
Oryza sativa subsp. indica (taxid: 39946)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4

>sp|Q0JGZ6|SCRK1_ORYSJ Fructokinase-1 OS=Oryza sativa subsp. japonica GN=FRK1 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%)

Query: 10  DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESAT 69
           D TG+GDA V A+LR++   P   ++Q  L+  ++FA A G I     GA+   PTE   
Sbjct: 257 DTTGAGDAFVGALLRRIVQDPSSLQDQKKLEEAIKFANACGAITATKKGAIPSLPTEVEV 316

Query: 70  QNLKEQ 75
             L E 
Sbjct: 317 LKLMES 322

May play an important role in maintaining the flux of carbon towards starch formation. May also be involved in a sugar-sensing pathway.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

>sp|P37829|SCRK_SOLTU Fructokinase OS=Solanum tuberosum PE=2 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%)

Query: 8   TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTES 67
           T D TG+GD+ V A+L K+     + E++  L+  LRF+ A G I     GA+   PTES
Sbjct: 250 TVDTTGAGDSFVGALLTKIVDDQAILEDEARLKEVLRFSCACGAITTTKKGAIPALPTES 309

Query: 68  ATQNL 72
               L
Sbjct: 310 EALTL 314

May play an important role in maintaining the flux of carbon towards starch formation.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

>sp|Q6XZ78|SCRK2_MAIZE Fructokinase-2 OS=Zea mays GN=FRK2 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 8   TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTES 67
           T D TG+GDA V ++L  +     +F N++ L+  L+F+ A G I     GA+   PT +
Sbjct: 266 TVDTTGAGDAFVGSLLVNVAKDDSIFHNEEKLREALKFSNACGAICTTKKGAIPALPTVA 325

Query: 68  ATQNL 72
             Q+L
Sbjct: 326 TAQDL 330

May play an important role in maintaining the flux of carbon towards starch formation. May also be involved in a sugar-sensing pathway.

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

>sp|Q9M1B9|SCRK4_ARATH Probable fructokinase-4 OS=Arabidopsis thaliana GN=At3g59480 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 4   ITPF---TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
           + PF     D TG+GD+ V A+L K+     + E++  L+  LR A A G I     GA+
Sbjct: 251 VDPFHVDAVDTTGAGDSFVGALLCKIVDDRAVLEDEARLREVLRLANACGAITTTKKGAI 310

Query: 61  RGFPTESATQNL 72
              PTES  Q+L
Sbjct: 311 PALPTESEVQSL 322

May play an important role in maintaining the flux of carbon towards starch formation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

>sp|Q0J8G4|SCRK2_ORYSJ Fructokinase-2 OS=Oryza sativa subsp. japonica GN=FRK2 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 8   TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTES 67
           T D TG+GDA V ++L  +     +F N++ L+  L+F+ A G I     GA+   PT +
Sbjct: 266 TVDTTGAGDAFVGSLLVNVAKDDSIFHNEEKLREALKFSNACGAICTTKKGAIPALPTVA 325

Query: 68  ATQNL 72
             Q L
Sbjct: 326 VAQEL 330

May play an important role in maintaining the flux of carbon towards starch formation in endosperm. May also be involved in a sugar-sensing pathway.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

>sp|A2YQL4|SCRK2_ORYSI Fructokinase-2 OS=Oryza sativa subsp. indica GN=FRK2 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 8   TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTES 67
           T D TG+GDA V ++L  +     +F N++ L+  L+F+ A G I     GA+   PT +
Sbjct: 266 TVDTTGAGDAFVGSLLVNVAKDDSIFHNEEKLREALKFSNACGAICTTKKGAIPALPTVA 325

Query: 68  ATQNL 72
             Q L
Sbjct: 326 VAQEL 330

May play an important role in maintaining the flux of carbon towards starch formation in endosperm. May also be involved in a sugar-sensing pathway.

Oryza sativa subsp. indica (taxid: 39946)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

>sp|Q9SID0|SCRK1_ARATH Probable fructokinase-1 OS=Arabidopsis thaliana GN=At2g31390 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 4   ITPF---TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
           + PF     D TG+GD+ V A+L ++     + E+++ L++ LRFA A G I     GA+
Sbjct: 250 VDPFHVNAVDTTGAGDSFVGALLNQIVDDRSVLEDEERLRKVLRFANACGAITTTKKGAI 309

Query: 61  RGFPTESATQNLKEQ 75
              P+++  ++  E+
Sbjct: 310 PALPSDAEVRSFLEK 324

May play an important role in maintaining the flux of carbon towards starch formation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

>sp|Q6XZ79|SCRK1_MAIZE Fructokinase-1 OS=Zea mays GN=FRK1 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%)

Query: 10  DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESAT 69
           D TG+GDA V A+L+++   P   +++  L   ++FA A G I     GA+   PTE+  
Sbjct: 257 DTTGAGDAFVGALLQRIVKDPSSLQDEKKLVESIKFANACGAITTTKKGAIPSLPTEAEV 316

Query: 70  QNLKEQ 75
             L E+
Sbjct: 317 LQLIEK 322

May play an important role in maintaining the flux of carbon towards starch formation in endosperm. May also be involved in a sugar-sensing pathway.

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

>sp|Q42896|SCRK2_SOLLC Fructokinase-2 OS=Solanum lycopersicum GN=FRK2 PE=2 SV=2

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 34/65 (52%)

Query: 8   TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTES 67
           T D TG+GD+ V A+L K+     + E++  L+  LRF+ A G I     GA+   PT S
Sbjct: 259 TVDTTGAGDSFVGALLTKIVDDQTILEDEARLKEVLRFSCACGAITTTKKGAIPALPTAS 318

Query: 68  ATQNL 72
               L
Sbjct: 319 EALTL 323

May play an important role in maintaining the flux of carbon towards starch formation.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
298569774	479	fructokinase-like protein 1 [Citrus clem	1.0	0.171	1.0	2e-42
298569784	468	fructokinase-like protein 1 [Vigna ungui	1.0	0.175	0.963	2e-41
255573917	500	fructokinase, putative [Ricinus communis	1.0	0.164	0.939	7e-41
356504307	460	PREDICTED: LOW QUALITY PROTEIN: fructoki	1.0	0.178	0.951	8e-41
297816714	477	pfkB-type carbohydrate kinase family pro	1.0	0.171	0.951	2e-40
356496144	467	PREDICTED: fructokinase-2-like [Glycine	1.0	0.175	0.951	2e-40
15232415	471	fructokinase-like 1 [Arabidopsis thalian	1.0	0.174	0.939	2e-40
224138982	485	predicted protein [Populus trichocarpa]	1.0	0.169	0.914	4e-40
449483430	511	PREDICTED: LOW QUALITY PROTEIN: fructoki	1.0	0.160	0.914	2e-39
449439936	511	PREDICTED: fructokinase-2-like [Cucumis	1.0	0.160	0.914	2e-39

>gi|298569774|gb|ADI87415.1| fructokinase-like protein 1 [Citrus clementina]

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 1   DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
           DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV
Sbjct: 398 DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 457

Query: 61  RGFPTESATQNLKEQVYVPSMW 82
           RGFPTESATQNLKEQVYVPSMW
Sbjct: 458 RGFPTESATQNLKEQVYVPSMW 479

Source: Citrus clementina

Species: Citrus clementina

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298569784|gb|ADI87420.1| fructokinase-like protein 1 [Vigna unguiculata]

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/82 (96%), Positives = 82/82 (100%)

Query: 1   DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
           DVLITPFTCDRTGSGDA+VAAILRKLTTCPEMFENQDVL+RQLRFAVAAGIIAQWTIGA+
Sbjct: 387 DVLITPFTCDRTGSGDAIVAAILRKLTTCPEMFENQDVLERQLRFAVAAGIIAQWTIGAI 446

Query: 61  RGFPTESATQNLKEQVYVPSMW 82
           RGFPTESATQNLKEQVYVPSMW
Sbjct: 447 RGFPTESATQNLKEQVYVPSMW 468

Source: Vigna unguiculata

Species: Vigna unguiculata

Genus: Vigna

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573917|ref|XP_002527877.1| fructokinase, putative [Ricinus communis] gi|223532728|gb|EEF34508.1| fructokinase, putative [Ricinus communis]

 Score =  171 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 77/82 (93%), Positives = 82/82 (100%)

Query: 1   DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
           DVLITPFTCDRTGSGDAVVAA++RKLTTCPEMFE+QDVL+RQLRFAVAAGII+QWTIGAV
Sbjct: 419 DVLITPFTCDRTGSGDAVVAAMMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQWTIGAV 478

Query: 61  RGFPTESATQNLKEQVYVPSMW 82
           RGFPTESATQNLKEQVYVPSMW
Sbjct: 479 RGFPTESATQNLKEQVYVPSMW 500

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504307|ref|XP_003520938.1| PREDICTED: LOW QUALITY PROTEIN: fructokinase-2-like [Glycine max]

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 78/82 (95%), Positives = 82/82 (100%)

Query: 1   DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
           DVLITP+TCDRTGSGDAVVAAILRKLTTCPEMFENQDVL+RQLRFAVAAGII+QWTIGAV
Sbjct: 379 DVLITPYTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLERQLRFAVAAGIISQWTIGAV 438

Query: 61  RGFPTESATQNLKEQVYVPSMW 82
           RGFPTESATQNLKEQVYVPS+W
Sbjct: 439 RGFPTESATQNLKEQVYVPSLW 460

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816714|ref|XP_002876240.1| pfkB-type carbohydrate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297322078|gb|EFH52499.1| pfkB-type carbohydrate kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/82 (95%), Positives = 81/82 (98%)

Query: 1   DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
           DVLITPFTCDRTGSGDAVVA I+RKLTTCPEMFE+QDVL+RQLRFAVAAGIIAQWTIGAV
Sbjct: 396 DVLITPFTCDRTGSGDAVVAGIMRKLTTCPEMFEDQDVLERQLRFAVAAGIIAQWTIGAV 455

Query: 61  RGFPTESATQNLKEQVYVPSMW 82
           RGFPTESATQNLKEQVYVPSMW
Sbjct: 456 RGFPTESATQNLKEQVYVPSMW 477

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496144|ref|XP_003516930.1| PREDICTED: fructokinase-2-like [Glycine max]

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/82 (95%), Positives = 82/82 (100%)

Query: 1   DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
           DVLITP+TCDRTGSGDAVVAAILRKLTTCPEMFENQDVL+RQLRFAVAAGII+QWTIGAV
Sbjct: 386 DVLITPYTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLERQLRFAVAAGIISQWTIGAV 445

Query: 61  RGFPTESATQNLKEQVYVPSMW 82
           RGFPTESATQNLKEQVYVPS+W
Sbjct: 446 RGFPTESATQNLKEQVYVPSLW 467

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232415|ref|NP_190977.1| fructokinase-like 1 [Arabidopsis thaliana] gi|6822055|emb|CAB70983.1| fructokinase-like protein [Arabidopsis thaliana] gi|20260524|gb|AAM13160.1| fructokinase-like protein [Arabidopsis thaliana] gi|22136278|gb|AAM91217.1| fructokinase-like protein [Arabidopsis thaliana] gi|332645666|gb|AEE79187.1| fructokinase-like 1 [Arabidopsis thaliana]

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/82 (93%), Positives = 81/82 (98%)

Query: 1   DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
           DVLITPFTCDRTGSGDAVVA I+RKLTTCPEMFE+QDV++RQLRFAVAAGIIAQWTIGAV
Sbjct: 390 DVLITPFTCDRTGSGDAVVAGIMRKLTTCPEMFEDQDVMERQLRFAVAAGIIAQWTIGAV 449

Query: 61  RGFPTESATQNLKEQVYVPSMW 82
           RGFPTESATQNLKEQVYVPSMW
Sbjct: 450 RGFPTESATQNLKEQVYVPSMW 471

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138982|ref|XP_002322950.1| predicted protein [Populus trichocarpa] gi|222867580|gb|EEF04711.1| predicted protein [Populus trichocarpa]

 Score =  168 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 75/82 (91%), Positives = 81/82 (98%)

Query: 1   DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
           DVLITPFTCDRTGSGDA+VAA++RKLTTCPEMFE+QDV +RQLRFAVAAGII+QWTIGAV
Sbjct: 404 DVLITPFTCDRTGSGDAIVAALMRKLTTCPEMFEDQDVCERQLRFAVAAGIISQWTIGAV 463

Query: 61  RGFPTESATQNLKEQVYVPSMW 82
           RGFPTESATQNLKEQVYVPSMW
Sbjct: 464 RGFPTESATQNLKEQVYVPSMW 485

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483430|ref|XP_004156589.1| PREDICTED: LOW QUALITY PROTEIN: fructokinase-2-like [Cucumis sativus]

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/82 (91%), Positives = 79/82 (96%)

Query: 1   DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
           DVLITPFTCDRTGSGDAVVA I+RKLTT PEM ENQDVL+RQLRFA+AAGII+QWTIGAV
Sbjct: 430 DVLITPFTCDRTGSGDAVVAGIMRKLTTFPEMLENQDVLERQLRFAIAAGIISQWTIGAV 489

Query: 61  RGFPTESATQNLKEQVYVPSMW 82
           RGFPTESATQNLKEQVYVPSMW
Sbjct: 490 RGFPTESATQNLKEQVYVPSMW 511

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439936|ref|XP_004137741.1| PREDICTED: fructokinase-2-like [Cucumis sativus]

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/82 (91%), Positives = 79/82 (96%)

Query: 1   DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
           DVLITPFTCDRTGSGDAVVA I+RKLTT PEM ENQDVL+RQLRFA+AAGII+QWTIGAV
Sbjct: 430 DVLITPFTCDRTGSGDAVVAGIMRKLTTFPEMLENQDVLERQLRFAIAAGIISQWTIGAV 489

Query: 61  RGFPTESATQNLKEQVYVPSMW 82
           RGFPTESATQNLKEQVYVPSMW
Sbjct: 490 RGFPTESATQNLKEQVYVPSMW 511

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
TAIR|locus:2080270	471	FLN1 "AT3G54090" [Arabidopsis	1.0	0.174	0.939	4.3e-38
TAIR|locus:2026465	616	FLN2 "fructokinase-like 2" [Ar	0.780	0.103	0.468	2.2e-11
TAIR|locus:2011897	146	AT1G50390 [Arabidopsis thalian	0.817	0.458	0.367	9e-06
TAIR|locus:2198831	329	AT1G06030 [Arabidopsis thalian	0.817	0.203	0.382	2.4e-05
TAIR|locus:2097553	326	AT3G59480 [Arabidopsis thalian	0.841	0.211	0.375	3e-05
TAIR|locus:2198821	345	AT1G06020 [Arabidopsis thalian	0.804	0.191	0.373	3.3e-05
TAIR|locus:2061320	325	AT2G31390 [Arabidopsis thalian	0.878	0.221	0.306	5e-05
TAIR|locus:2028987	384	AT1G66430 [Arabidopsis thalian	0.719	0.153	0.372	0.00029
TAIR|locus:2165361	343	AT5G51830 [Arabidopsis thalian	0.768	0.183	0.349	0.00067

TAIR|locus:2080270 FLN1 "AT3G54090" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 77/82 (93%), Positives = 81/82 (98%)

Query:     1 DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
             DVLITPFTCDRTGSGDAVVA I+RKLTTCPEMFE+QDV++RQLRFAVAAGIIAQWTIGAV
Sbjct:   390 DVLITPFTCDRTGSGDAVVAGIMRKLTTCPEMFEDQDVMERQLRFAVAAGIIAQWTIGAV 449

Query:    61 RGFPTESATQNLKEQVYVPSMW 82
             RGFPTESATQNLKEQVYVPSMW
Sbjct:   450 RGFPTESATQNLKEQVYVPSMW 471

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0042644 "chloroplast nucleoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=IMP;RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=IMP;RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2026465 FLN2 "fructokinase-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 30/64 (46%), Positives = 42/64 (65%)

Query:     1 DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
             DV ITPFT D + SGD +VA ++R LT  P++  N+  L+R  R+A+  GII QW +   
Sbjct:   483 DVPITPFTRDMSASGDGIVAGLIRMLTVQPDLMNNKGYLERTARYAIECGIIDQWLLAQT 542

Query:    61 RGFP 64
             RG+P
Sbjct:   543 RGYP 546

GO:0005737 "cytoplasm" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0009295 "nucleoid" evidence=IDA

GO:0042644 "chloroplast nucleoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=IMP;RCA

GO:0042793 "transcription from plastid promoter" evidence=IMP;RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009662 "etioplast organization" evidence=IMP

TAIR|locus:2011897 AT1G50390 [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 25/68 (36%), Positives = 37/68 (54%)

Query:    10 DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTE-SA 68
             D TG+GD+ V A+L ++     + E ++ L++ LR A A G I     GA+   PT+  A
Sbjct:    77 DTTGAGDSFVGALLNQIVDDQSVLEEEERLRKVLRIANACGAITTTKKGAIPALPTDCEA 136

Query:    69 TQNLKEQV 76
                LK QV
Sbjct:   137 LSFLKRQV 144

GO:0005737 "cytoplasm" evidence=ISM

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

TAIR|locus:2198831 AT1G06030 [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 26/68 (38%), Positives = 38/68 (55%)

Query:    10 DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTE-SA 68
             D TG+GD+ V A+L ++     + E ++ L++ LRFA A G I     GA+   PT+  A
Sbjct:   261 DTTGAGDSFVGALLNQIVDDQSVLEEEERLRKVLRFANACGAITTTKKGAIPALPTDCEA 320

Query:    69 TQNLKEQV 76
                LK QV
Sbjct:   321 LSFLKIQV 328

GO:0004747 "ribokinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006014 "D-ribose metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2097553 AT3G59480 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 27/72 (37%), Positives = 38/72 (52%)

Query:     4 ITPF---TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
             + PF     D TG+GD+ V A+L K+     + E++  L+  LR A A G I     GA+
Sbjct:   251 VDPFHVDAVDTTGAGDSFVGALLCKIVDDRAVLEDEARLREVLRLANACGAITTTKKGAI 310

Query:    61 RGFPTESATQNL 72
                PTES  Q+L
Sbjct:   311 PALPTESEVQSL 322

GO:0004747 "ribokinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006014 "D-ribose metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

TAIR|locus:2198821 AT1G06020 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query:    10 DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTE-SA 68
             D TG+GD+ V A+L+++     + E++  L++ LRFA A G I     GA+   PT+  A
Sbjct:   260 DTTGAGDSFVGALLQQIVDDQSVLEDEARLRKVLRFANACGAITTTKKGAIPALPTDIEA 319

Query:    69 TQNLKEQ 75
                LK+Q
Sbjct:   320 LSFLKDQ 326

GO:0004747 "ribokinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006014 "D-ribose metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

TAIR|locus:2061320 AT2G31390 [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 23/75 (30%), Positives = 42/75 (56%)

Query:     4 ITPF---TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
             + PF     D TG+GD+ V A+L ++     + E+++ L++ LRFA A G I     GA+
Sbjct:   250 VDPFHVNAVDTTGAGDSFVGALLNQIVDDRSVLEDEERLRKVLRFANACGAITTTKKGAI 309

Query:    61 RGFPTESATQNLKEQ 75
                P+++  ++  E+
Sbjct:   310 PALPSDAEVRSFLEK 324

GO:0004747 "ribokinase activity" evidence=IEA

GO:0006014 "D-ribose metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2028987 AT1G66430 [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00029, P = 0.00029
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query:    10 DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESA 68
             D TG+GDA VA IL +L     + ++++ L+  L FA A G +     GA+   PT+ A
Sbjct:   316 DTTGAGDAFVAGILSQLANDLSLLQDEERLREALMFANACGALTVKVRGAIPALPTKEA 374

GO:0004747 "ribokinase activity" evidence=IEA

GO:0006014 "D-ribose metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2165361 AT5G51830 [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00067, P = 0.00067
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query:    10 DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESAT 69
             D TG+GDA V+ +L  L +   + +++  L+  L FA A G I     GA+   P+  A 
Sbjct:   275 DTTGAGDAFVSGLLNSLASDLTLLKDEKKLREALLFANACGAITVTERGAIPAMPSMDAV 334

Query:    70 QNL 72
             Q+L
Sbjct:   335 QDL 337


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.134   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       82        82   0.00091  102 3  11 22  0.38    29
                                                     29  0.43    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  541 (58 KB)
  Total size of DFA:  102 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.53u 0.15s 8.68t   Elapsed:  00:00:00
  Total cpu time:  8.54u 0.15s 8.69t   Elapsed:  00:00:00
  Start:  Fri May 10 01:21:50 2013   End:  Fri May 10 01:21:50 2013

GO:0004747 "ribokinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006014 "D-ribose metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	82
PLN02543	496	PLN02543, PLN02543, pfkB-type carbohydrate kinase	3e-62
PLN02967	581	PLN02967, PLN02967, kinase	7e-18
cd01167	295	cd01167, bac_FRK, Fructokinases (FRKs) mainly from	2e-15
PLN02323	330	PLN02323, PLN02323, probable fructokinase	2e-09
TIGR03168	303	TIGR03168, 1-PFK, hexose kinase, 1-phosphofructoki	0.002
cd01166	294	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (Kdg	0.003

>gnl|CDD|215299 PLN02543, PLN02543, pfkB-type carbohydrate kinase family protein

 Score =  195 bits (496), Expect = 3e-62
 Identities = 78/82 (95%), Positives = 82/82 (100%)

Query: 1   DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
           DVLITPFTCDRTGSGDAVVAAI+RKLTTCPEMFE+QDVL+RQLRFAVAAGII+QWTIGAV
Sbjct: 415 DVLITPFTCDRTGSGDAVVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQWTIGAV 474

Query: 61  RGFPTESATQNLKEQVYVPSMW 82
           RGFPTESATQNLKEQVYVPSMW
Sbjct: 475 RGFPTESATQNLKEQVYVPSMW 496

Length = 496

>gnl|CDD|215521 PLN02967, PLN02967, kinase

 Score = 75.9 bits (186), Expect = 7e-18
 Identities = 26/64 (40%), Positives = 41/64 (64%)

Query: 1   DVLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
           D  ITPFT D + SGD +VA ++R LT  P +  ++  L++ +++A+  G+I QW +   
Sbjct: 473 DAPITPFTSDMSASGDGIVAGLMRMLTVQPHLITDKGYLEKTIKYAIDCGVIDQWLLART 532

Query: 61  RGFP 64
           RGFP
Sbjct: 533 RGFP 536

Length = 581

>gnl|CDD|238572 cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 4   ITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60
           I     D TG+GDA VA +L +L +   +  ++D L   LRFA A G +     GA+
Sbjct: 239 IPVEVVDTTGAGDAFVAGLLAQLLSRGLLALDEDELAEALRFANAVGALTCTKAGAI 295

This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate. Length = 295

>gnl|CDD|215183 PLN02323, PLN02323, probable fructokinase

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 24/65 (36%), Positives = 34/65 (52%)

Query: 8   TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTES 67
             D TG+GDA V  +L +L     + E+++ L+  LRFA A G I     GA+   PT+ 
Sbjct: 260 AVDTTGAGDAFVGGLLSQLAKDLSLLEDEERLREALRFANACGAITTTERGAIPALPTKE 319

Query: 68  ATQNL 72
           A   L
Sbjct: 320 AVLKL 324

Length = 330

>gnl|CDD|234133 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 12  TGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQN 71
            G+GD++VA  L  L            L+  LRFAVAAG  A ++ G   G P     + 
Sbjct: 247 VGAGDSMVAGFLAGL-------ARGLSLEEALRFAVAAGSAAAFSPGT--GLPDPEDVEE 297

Query: 72  LKEQV 76
           L +QV
Sbjct: 298 LLDQV 302

This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases. Length = 303

>gnl|CDD|238571 cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 10  DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIA 53
           D TG+GDA  A  L  L       E  D L+  LRFA AA  + 
Sbjct: 251 DTTGAGDAFAAGFLAGLL------EGWD-LEEALRFANAAAALV 287

KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources. Length = 294

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
PLN02543	496	pfkB-type carbohydrate kinase family protein	99.88
PLN02341	470	pfkB-type carbohydrate kinase family protein	99.68
PLN02323	330	probable fructokinase	99.68
PRK09513	312	fruK 1-phosphofructokinase; Provisional	99.66
PTZ00292	326	ribokinase; Provisional	99.66
COG0524	311	RbsK Sugar kinases, ribokinase family [Carbohydrat	99.66
PRK13508	309	tagatose-6-phosphate kinase; Provisional	99.66
TIGR03828	304	pfkB 1-phosphofructokinase. This enzyme acts in co	99.65
PRK09850	313	pseudouridine kinase; Provisional	99.65
PRK11142	306	ribokinase; Provisional	99.65
PLN02967	581	kinase	99.63
TIGR01231	309	lacC tagatose-6-phosphate kinase. This enzyme is p	99.63
PLN02813	426	pfkB-type carbohydrate kinase family protein	99.63
PRK10294	309	6-phosphofructokinase 2; Provisional	99.61
PLN02379	367	pfkB-type carbohydrate kinase family protein	99.61
KOG2855	330	consensus Ribokinase [Carbohydrate transport and m	99.6
PLN02630	335	pfkB-type carbohydrate kinase family protein	99.59
TIGR03168	303	1-PFK hexose kinase, 1-phosphofructokinase family.	99.58
PF00294	301	PfkB: pfkB family carbohydrate kinase; InterPro: I	99.57
PRK09434	304	aminoimidazole riboside kinase; Provisional	99.57
PRK09954	362	putative kinase; Provisional	99.57
TIGR02198	315	rfaE_dom_I rfaE bifunctional protein, domain I. Rf	99.57
cd01945	284	ribokinase_group_B Ribokinase-like subgroup B. Fou	99.54
PTZ00247	345	adenosine kinase; Provisional	99.53
cd01168	312	adenosine_kinase Adenosine kinase (AK) catalyzes t	99.52
PLN02548	332	adenosine kinase	99.51
cd01172	304	RfaE_like RfaE encodes a bifunctional ADP-heptose	99.51
PRK09813	260	fructoselysine 6-kinase; Provisional	99.51
TIGR02152	293	D_ribokin_bact ribokinase. This model describes ri	99.51
cd01940	264	Fructoselysine_kinase_like Fructoselysine kinase-l	99.5
cd01947	265	Guanosine_kinase_like Guanosine kinase-like sugar	99.49
PRK15074	434	inosine/guanosine kinase; Provisional	99.49
cd01174	292	ribokinase Ribokinase catalyses the phosphorylatio	99.48
cd01939	290	Ketohexokinase Ketohexokinase (fructokinase, KHK)	99.48
COG1105	310	FruK Fructose-1-phosphate kinase and related fruct	99.48
cd01944	289	YegV_kinase_like YegV-like sugar kinase. Found onl	99.47
cd01943	328	MAK32 MAK32 kinase. MAK32 is a protein found prima	99.46
cd01942	279	ribokinase_group_A Ribokinase-like subgroup A. Fou	99.45
cd01167	295	bac_FRK Fructokinases (FRKs) mainly from bacteria	99.43
PRK11316	473	bifunctional heptose 7-phosphate kinase/heptose 1-	99.42
cd01166	294	KdgK 2-keto-3-deoxygluconate kinase (KdgK) phospho	99.39
cd01164	289	FruK_PfkB_like 1-phosphofructokinase (FruK), minor	99.37
cd01941	288	YeiC_kinase_like YeiC-like sugar kinase. Found in	99.34
cd01946	277	ribokinase_group_C Ribokinase-like subgroup C. Fou	99.31
cd01937	254	ribokinase_group_D Ribokinase-like subgroup D. Fou	99.26
KOG2947	308	consensus Carbohydrate kinase [Carbohydrate transp	99.25
KOG2854	343	consensus Possible pfkB family carbohydrate kinase	99.16
TIGR00687	286	pyridox_kin pyridoxal kinase. ThiD and related pro	98.9
PRK12413	253	phosphomethylpyrimidine kinase; Provisional	98.76
PRK07105	284	pyridoxamine kinase; Validated	98.75
cd01173	254	pyridoxal_pyridoxamine_kinase Pyridoxal kinase pla	98.73
PRK08573	448	phosphomethylpyrimidine kinase; Provisional	98.67
PRK05756	286	pyridoxamine kinase; Validated	98.66
TIGR00097	254	HMP-P_kinase phosphomethylpyrimidine kinase. This	98.65
PRK12412	268	pyridoxal kinase; Reviewed	98.61
PRK06427	266	bifunctional hydroxy-methylpyrimidine kinase/ hydr	98.6
cd01169	242	HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrim	98.5
PRK08176	281	pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpy	98.39
COG2870	467	RfaE ADP-heptose synthase, bifunctional sugar kina	98.39
PRK12616	270	pyridoxal kinase; Reviewed	98.37
PTZ00347	504	phosphomethylpyrimidine kinase; Provisional	98.07
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	98.01
cd01171	254	YXKO-related B.subtilis YXKO protein of unknown fu	97.92
PTZ00344	296	pyridoxal kinase; Provisional	97.89
PRK14713	530	multifunctional hydroxymethylpyrimidine phosphokin	97.8
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	97.75
PLN02978	308	pyridoxal kinase	96.86
TIGR00196	272	yjeF_cterm yjeF C-terminal region, hydroxyethylthi	96.82
PF08543	246	Phos_pyr_kin: Phosphomethylpyrimidine kinase; Inte	96.27
cd01170	242	THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (T	95.77
PTZ00493	321	phosphomethylpyrimidine kinase; Provisional	95.09
COG2240	281	PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coe	95.02
KOG3009	614	consensus Predicted carbohydrate kinase, contains	94.54
COG0351	263	ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidi	93.19
PRK09355	263	hydroxyethylthiazole kinase; Validated	92.52
TIGR00694	249	thiM hydroxyethylthiazole kinase. This model repre	83.39

>PLN02543 pfkB-type carbohydrate kinase family protein

Probab=99.88  E-value=1.5e-22  Score=150.40  Aligned_cols=79  Identities=95%  Similarity=1.467  Sum_probs=69.6

Q ss_pred             CCCCccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCCCC
Q 040065            4 ITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPSMW   82 (82)
Q Consensus         4 ~~~~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~   82 (82)
                      +++.+||||||||+|+|||+++|++......++++++++++||+++|+++|++.|++.++|+++++++++++++||+||
T Consensus       418 v~~~~VDTTGAGDAF~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev~~~~~~~~~~~~~  496 (496)
T PLN02543        418 ITPFTCDRTGSGDAVVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQWTIGAVRGFPTESATQNLKEQVYVPSMW  496 (496)
T ss_pred             CCCCCcCCCchHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhhccccCC
Confidence            4555799999999999999999984322221357899999999999999999999999999999999999999999999

>PLN02341 pfkB-type carbohydrate kinase family protein

Probab=99.68  E-value=1.1e-16  Score=118.26  Aligned_cols=65  Identities=26%  Similarity=0.235  Sum_probs=61.0

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYV   78 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~   78 (82)
                      ++||||||||+|+|||+++++       +|++++++++||+++|+++++..|+..++|+++++++++++...
T Consensus       348 ~vVDTtGAGDaF~Agfl~gll-------~G~~l~eal~~A~a~aA~~v~~~Ga~~~~p~~~ev~~~l~~~~~  412 (470)
T PLN02341        348 NVVDTVGCGDSFAAAIALGYI-------HNLPLVNTLTLANAVGAATAMGCGAGRNVATLEKVLELLRASNL  412 (470)
T ss_pred             CCCCCcCccHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcCcCCCCCCCCHHHHHHHHHhcCC
Confidence            589999999999999999999       99999999999999999999999999999999999999876553

>PLN02323 probable fructokinase

Probab=99.68  E-value=1.3e-16  Score=111.84  Aligned_cols=62  Identities=37%  Similarity=0.532  Sum_probs=57.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchh-------hHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQD-------VLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQ   75 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~-------~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~   75 (82)
                      ++||||||||+|+|||+++++       +|+       ++++++++|+++|++++++.|+...+|+++++++++++
T Consensus       259 ~vvDttGAGDaf~Agfl~~l~-------~g~~~~~~~~~l~~al~~a~a~Aa~~v~~~g~~~~~~~~~~v~~~l~~  327 (330)
T PLN02323        259 KAVDTTGAGDAFVGGLLSQLA-------KDLSLLEDEERLREALRFANACGAITTTERGAIPALPTKEAVLKLLKK  327 (330)
T ss_pred             CCCCCCCcHHHHHHHHHHHHH-------cCCccccchHHHHHHHHHHHHHHHHHHhccCCccCCCCHHHHHHHHHH
Confidence            589999999999999999999       665       48999999999999999999998888999999988765

>PRK09513 fruK 1-phosphofructokinase; Provisional

Probab=99.66  E-value=2.3e-16  Score=109.94  Aligned_cols=66  Identities=18%  Similarity=0.288  Sum_probs=61.0

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPSM   81 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~   81 (82)
                      .++||+||||+|+|||+++++       +|+++++++++|+++|++++++.|.  +.++++++++++.++.+.++
T Consensus       246 ~~vDttGAGDaf~ag~i~~l~-------~g~~~~~a~~~A~a~Aa~~~~~~~~--~~~~~~e~~~~l~~~~~~~~  311 (312)
T PRK09513        246 DVVSTVGAGDSMVGGLIYGLL-------MRESSEHTLRLATAVSALAVSQSNV--GITDRPQLAAMMARVDLTPF  311 (312)
T ss_pred             cccCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhhCCCC--CCCCHHHHHHHHhceEEEeC
Confidence            489999999999999999999       9999999999999999999999974  78999999999998887653

>PTZ00292 ribokinase; Provisional

Probab=99.66  E-value=2.7e-16  Score=110.01  Aligned_cols=61  Identities=20%  Similarity=0.222  Sum_probs=57.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKE   74 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~   74 (82)
                      ++|||+||||+|+|||+++++       +|+++++++++|+++|++++++.|+...+|+.+++++.++
T Consensus       265 ~vvDttGAGDaF~ag~l~~l~-------~g~~~~~al~~a~a~Aa~~v~~~G~~~~~~~~~~~~~~~~  325 (326)
T PTZ00292        265 KAVDTTGAGDCFVGSMAYFMS-------RGKDLKESCKRANRIAAISVTRHGTQSSYPHPSELPADVK  325 (326)
T ss_pred             ccCCCcchHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHcCCCCccccCCCHHHHHHHhc
Confidence            589999999999999999999       9999999999999999999999999888899999887654

>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]

Probab=99.66  E-value=2.3e-16  Score=109.43  Aligned_cols=63  Identities=35%  Similarity=0.450  Sum_probs=59.8

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV   76 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~   76 (82)
                      ++||||||||+|.|||+++++       +|+++++++++|++++++++++.|+...+|+.++++.++++.
T Consensus       248 ~vvDttGAGDaF~agfl~~~~-------~g~~~~~a~~~a~a~aa~~~~~~g~~~~~p~~~~~~~~~~~~  310 (311)
T COG0524         248 KVVDTTGAGDAFAAGFLAGLL-------EGKSLEEALRFANAAAALAVTRPGARPSLPTREEVEAFLEEL  310 (311)
T ss_pred             ccccCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHhhhhhccCCCCCCCCCHHHHHHHHhcc
Confidence            499999999999999999999       999999999999999999999999999999999999988753

>PRK13508 tagatose-6-phosphate kinase; Provisional

Probab=99.66  E-value=2e-16  Score=110.07  Aligned_cols=65  Identities=25%  Similarity=0.248  Sum_probs=60.0

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPS   80 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~   80 (82)
                      .+||||||||+|+|||+++++       +|+++++++++|+++|++++++.+.  ...++.+++++++++.+.+
T Consensus       244 ~vvDttGAGDaF~Agfi~~l~-------~g~~~~~al~~a~a~aa~~~~~~~~--~~~~~~~~~~~~~~i~~~~  308 (309)
T PRK13508        244 EVVNPVGSGDSTVAGIASGLL-------HQEDDADLLKKANVLGMLNAQEKQT--GHVNMANYDELYNQIEVKE  308 (309)
T ss_pred             cccCCcChhHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCcCc--CCCCHHHHHHHHhceEEEe
Confidence            489999999999999999999       9999999999999999999999987  5678899999999888764

>TIGR03828 pfkB 1-phosphofructokinase

Probab=99.65  E-value=3.2e-16  Score=108.03  Aligned_cols=63  Identities=35%  Similarity=0.508  Sum_probs=58.6

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYV   78 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~   78 (82)
                      .++||+||||+|.|||+++++       +|.++++++++|+++|++++++.|+  .+|+++++++++.++.+
T Consensus       242 ~vvDttGAGDaF~a~~l~~l~-------~g~~~~~a~~~a~~~Aa~~~~~~G~--~~p~~~~~~~~~~~~~~  304 (304)
T TIGR03828       242 EVVSTVGAGDSMVAGFLAGLE-------SGLSLEEALRLAVAAGSAAAFSEGT--GLPDPEDIEELLPQVTI  304 (304)
T ss_pred             cccCCcChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCcCC--CCCCHHHHHHHHhcccC
Confidence            479999999999999999999       9999999999999999999999997  47999999999887754

This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).

>PRK09850 pseudouridine kinase; Provisional

Probab=99.65  E-value=5.4e-16  Score=108.21  Aligned_cols=62  Identities=19%  Similarity=0.136  Sum_probs=59.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQ   75 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~   75 (82)
                      ++||||||||+|+|||++++.       +|+++.+++++|+++|++++++.+..+..|++++++.++++
T Consensus       247 ~vvDttGAGDaF~agfi~~l~-------~g~~~~eal~~a~a~aa~~~~~~~~~~~~~~~~~~~~~~~~  308 (313)
T PRK09850        247 NVINVTGAGDAMMAGLASCWV-------DGMPFAESVRFAQGCSSMALSCEYTNNPDLSIANVISLVEN  308 (313)
T ss_pred             ccccCCCcHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCCCCCCcccCHHHHHHHHHH
Confidence            589999999999999999999       99999999999999999999999999999999999988764

>PRK11142 ribokinase; Provisional

Probab=99.65  E-value=4.1e-16  Score=107.73  Aligned_cols=61  Identities=26%  Similarity=0.320  Sum_probs=57.4

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKE   74 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~   74 (82)
                      .++||+||||+|+|||+++++       +|+++++++++|+++|+.++++.|+....|+.++++++++
T Consensus       244 ~vvDt~GAGDaF~Agfi~~l~-------~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~~~~~~~  304 (306)
T PRK11142        244 QAVDTIAAGDTFNGALVTALL-------EGKPLPEAIRFAHAAAAIAVTRKGAQPSIPWREEIDAFLQ  304 (306)
T ss_pred             ccccCCCchhHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHcCCCcccccCCCHHHHHHHHh
Confidence            589999999999999999999       9999999999999999999999999877899999988765

>PLN02967 kinase

Probab=99.63  E-value=6.1e-16  Score=116.91  Aligned_cols=65  Identities=34%  Similarity=0.780  Sum_probs=54.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQN   71 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~   71 (82)
                      .+||||||||+|+||||++|++....+..+.+++++++||+++|+++++..|++.++|+++++++
T Consensus       479 ~vVDTTGAGDAF~AGfL~~Ll~g~~~~~g~~~LeeaLrfAnAaAAL~vt~~GA~~glPt~~eV~~  543 (581)
T PLN02967        479 FTSDMSASGDGIVAGLMRMLTVQPHLITDKGYLEKTIKYAIDCGVIDQWLLARTRGFPPKEDMED  543 (581)
T ss_pred             CCCCCCchhHHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHhccCCCccCCCCHHHHhh
Confidence            36999999999999999999942111101267999999999999999999999999999999864

>TIGR01231 lacC tagatose-6-phosphate kinase

Probab=99.63  E-value=5.8e-16  Score=107.76  Aligned_cols=65  Identities=25%  Similarity=0.275  Sum_probs=59.7

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPS   80 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~   80 (82)
                      ++||||||||+|+|||+++++       +|+++++++++|+++|++++++.+.  ...++++++++.+++.+.+
T Consensus       244 ~vvDttGAGDaF~agfl~~l~-------~g~~~~~a~~~a~a~aa~~~~~~~~--~~~~~~~~~~~~~~i~~~~  308 (309)
T TIGR01231       244 SVVNPVGSGDSTVAGITSALL-------NHESDHDLLKKANTLGMLNAQEAQT--GHVNLNNYDDLFNQIEVLE  308 (309)
T ss_pred             CcCCCcchHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCccc--CCCCHHHHHHHHhceEEEe
Confidence            589999999999999999999       9999999999999999999999876  5688899999999987754

This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.

>PLN02813 pfkB-type carbohydrate kinase family protein

Probab=99.63  E-value=8.1e-16  Score=112.53  Aligned_cols=64  Identities=19%  Similarity=0.081  Sum_probs=59.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchh-hHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQD-VLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVY   77 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~-~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~   77 (82)
                      ++||||||||+|+|||+++++       +|+ +++++++||+++|+.++++.|+...+|+.+++.+.++...
T Consensus       345 ~vVDTtGAGDAF~Agfl~~l~-------~G~~~l~~al~~A~a~Aa~~v~~~Ga~~~~~~~~e~~~~~~~~~  409 (426)
T PLN02813        345 VPVDTCGAGDAYAAGILYGLL-------RGVSDLRGMGELAARVAATVVGQQGTRLRVEDAVELAESFALHL  409 (426)
T ss_pred             CcccCCChHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHcccCCCcCHHHHHHHHHHHHHHh
Confidence            589999999999999999999       999 9999999999999999999999988898888888776543

>PRK10294 6-phosphofructokinase 2; Provisional

Probab=99.61  E-value=2.1e-15  Score=105.00  Aligned_cols=61  Identities=30%  Similarity=0.415  Sum_probs=55.9

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV   76 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~   76 (82)
                      ++||||||||+|+|||+++++       +|+++++++++|+++|++++++.|+.  ..+.++++++.+++
T Consensus       247 ~vvDttGAGDaf~ag~l~~l~-------~g~~~~~al~~a~a~aa~~v~~~G~~--~~~~~~~~~~~~~~  307 (309)
T PRK10294        247 KSQSTVGAGDSMVGAMTLKLA-------ENASLEEMVRFGVAAGSAATLNQGTR--LCSHDDTQKIYAYL  307 (309)
T ss_pred             ccCCCcchHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHHh
Confidence            589999999999999999999       99999999999999999999999974  46888898888764

>PLN02379 pfkB-type carbohydrate kinase family protein

Probab=99.61  E-value=1.5e-15  Score=109.11  Aligned_cols=62  Identities=16%  Similarity=0.100  Sum_probs=52.3

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQ   75 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~   75 (82)
                      ++||||||||+|+|||+++++       +|+++++|+++|+++|+.++++.|+......++++.++++.
T Consensus       296 ~vVDTtGAGDaFaagfl~gl~-------~G~~l~~a~~~g~~aAa~vi~~~G~~~~~~~~~~~~~~~~~  357 (367)
T PLN02379        296 NAVDATGAGDLFASGFLYGLI-------KGLSLEECCKVGACSGGSVVRALGGEVTPENWQWMYKQMQL  357 (367)
T ss_pred             CcccCCChhHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHH
Confidence            489999999999999999999       99999999999999999999999975443344455555543

>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]

Probab=99.60  E-value=2.6e-15  Score=106.95  Aligned_cols=68  Identities=34%  Similarity=0.472  Sum_probs=58.7

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV   76 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~   76 (82)
                      ++||||||||+|+|||+.+|.+. ... ....++++++||++|++++++..|+++++|.++++++.++..
T Consensus       260 ~~VDtTGAGDsFvgal~~~L~~~-~~~-~~~~L~~~l~~A~a~~ai~v~~~Ga~~s~p~~~~~~~~~~~~  327 (330)
T KOG2855|consen  260 KAVDTTGAGDSFVGALAVQLVRG-SLL-PELSLEEALRFANACGAITVQRKGAIPSMPTEKEVQSLLKSS  327 (330)
T ss_pred             ccccCCCchHHHHHHHHHHHhhc-ccc-chHHHHHHHHHHHHhhhHHhhccCCCccCccHHHHHHHhhhc
Confidence            38999999999999999999943 112 235699999999999999999999999999999998877654

>PLN02630 pfkB-type carbohydrate kinase family protein

Probab=99.59  E-value=2.7e-15  Score=107.02  Aligned_cols=65  Identities=18%  Similarity=0.186  Sum_probs=59.3

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPS   80 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~   80 (82)
                      .+||||||||+|+|||+++++       ++++++++++||+++|++++++.|.  ...+.++++++++++.+.+
T Consensus       232 ~~vDttGAGDaF~agfi~~l~-------~g~~~~~a~~~A~a~aa~~v~~~G~--~~~~~~~l~~~~~~i~i~~  296 (335)
T PLN02630        232 IQVDPTGAGDSFLGGFVAGLV-------QGLAVPDAALLGNYFGSLAVEQVGI--PKFDLRQLQRVKDEVQRRK  296 (335)
T ss_pred             CCCCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhCcCCC--CCCCHHHHHHHhhcEEEEE
Confidence            589999999999999999999       8999999999999999999999995  5568899999998887654

>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family

Probab=99.58  E-value=7e-15  Score=101.73  Aligned_cols=61  Identities=38%  Similarity=0.576  Sum_probs=56.8

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV   76 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~   76 (82)
                      +++||+||||+|+|||+++++       +|.++++++++|+++|+.++++.|+  ..|+++++++++.++
T Consensus       242 ~~vDttGAGD~F~a~~~~~l~-------~g~~i~~a~~~A~~~aa~~~~~~G~--~~~~~~~~~~~~~~~  302 (303)
T TIGR03168       242 EVVNTVGAGDSMVAGFLAGLA-------RGLSLEEALRFAVAAGSAAAFSPGT--GLPDPEDVEELLDQV  302 (303)
T ss_pred             eeecCcCHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCCCc--CCCCHHHHHHHHhhc
Confidence            578999999999999999999       8999999999999999999999998  468999999988775

This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.

>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases

Probab=99.57  E-value=5.8e-15  Score=101.09  Aligned_cols=53  Identities=32%  Similarity=0.386  Sum_probs=49.8

Q ss_pred             CCccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 040065            6 PFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPT   65 (82)
Q Consensus         6 ~~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~   65 (82)
                      .+++|||||||+|+|||+++++       ++.++++++++|+++|+.++++.|+..++|+
T Consensus       248 ~~vvdttGAGD~f~A~~i~~l~-------~~~~~~~a~~~a~~~aa~~v~~~g~~~~~p~  300 (301)
T PF00294_consen  248 VNVVDTTGAGDAFAAGFIYGLL-------SGMSLEEALKFANAAAALKVQQPGPRSPLPT  300 (301)
T ss_dssp             SSSSSCTTHHHHHHHHHHHHHH-------TTHHHHHHHHHHHHHHHHHHTSSSSSGGTT-
T ss_pred             ccccceeccchhhhHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhCCCCCcCCCCC
Confidence            4699999999999999999999       9999999999999999999999999888875

The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....

>PRK09434 aminoimidazole riboside kinase; Provisional

Probab=99.57  E-value=5.5e-15  Score=102.31  Aligned_cols=56  Identities=32%  Similarity=0.428  Sum_probs=51.4

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchh------hHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQD------VLQRQLRFAVAAGIIAQWTIGAVRGFPTESAT   69 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~------~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i   69 (82)
                      .+||||||||+|+|||+++++       +|+      ++++++++|+++|+++++++|+...+|+.+++
T Consensus       242 ~~vDttGAGD~f~ag~~~~l~-------~g~~~~~~~~~~~a~~~a~~~Aa~~v~~~g~~~~~~~~~~~  303 (304)
T PRK09434        242 DPVDTTGAGDAFVAGLLAGLS-------QAGLWTDEAELAEIIAQAQACGALATTAKGAMTALPNRQEL  303 (304)
T ss_pred             CCCcCCCchHHHHHHHHHHHH-------cCCCccchHHHHHHHHHHHHHHHHHHcccCCcCCCCChHHc
Confidence            589999999999999999999       664      89999999999999999999998888887765

>PRK09954 putative kinase; Provisional

Probab=99.57  E-value=8e-15  Score=104.39  Aligned_cols=61  Identities=18%  Similarity=0.193  Sum_probs=54.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKE   74 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~   74 (82)
                      .+||||||||+|+|||+++++       +|++++++++||+++|++++.+........+.+.++++++
T Consensus       300 ~vvDttGAGDaF~Ag~l~~l~-------~g~~~~eal~~a~a~Aal~~~s~~~~~~~~~~~~~~~~~~  360 (362)
T PRK09954        300 TTVDSFGADDGFMAGLVYSFL-------EGYSFRDSARFAMACAAISRASGSLNNPTLSADNALSLVP  360 (362)
T ss_pred             ccccccchHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHhc
Confidence            589999999999999999999       9999999999999999999887766666677888877764

>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I

Probab=99.57  E-value=6e-15  Score=102.40  Aligned_cols=58  Identities=26%  Similarity=0.289  Sum_probs=53.3

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLK   73 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~   73 (82)
                      .+|||+||||+|.|||+++++       +++++++++++|+++|++++++.|+..  ++++++++.+
T Consensus       257 ~vvdt~GAGDaf~ag~~~~l~-------~g~~~~~al~~A~~~aa~~~~~~G~~~--~~~~~~~~~~  314 (315)
T TIGR02198       257 EVYDVTGAGDTVIATLALALA-------AGASLEEACRLANAAAGVVVGKLGTAT--VSPAELANAL  314 (315)
T ss_pred             CCCCCcCccHHHHHHHHHHHH-------cCCCHHHHHHHHHHHhhhhhccCCCCC--CCHHHHHHHh
Confidence            589999999999999999999       999999999999999999999999853  7888887765

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.

>cd01945 ribokinase_group_B Ribokinase-like subgroup B

Probab=99.54  E-value=1.3e-14  Score=99.17  Aligned_cols=52  Identities=35%  Similarity=0.472  Sum_probs=49.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPT   65 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~   65 (82)
                      +++||+||||+|+|||+++++       +|+++++++++|+++|++++++.|+.+++|+
T Consensus       233 ~vvDt~GAGDaf~ag~l~~l~-------~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~  284 (284)
T cd01945         233 EVVDTTGAGDVFHGAFAHALA-------EGMPLREALRFASAAAALKCRGLGGRAGLPT  284 (284)
T ss_pred             ccccCCCcHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence            589999999999999999999       9999999999999999999999999877763

Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .

>PTZ00247 adenosine kinase; Provisional

Probab=99.53  E-value=1.2e-14  Score=102.75  Aligned_cols=48  Identities=21%  Similarity=0.250  Sum_probs=45.6

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVR   61 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~   61 (82)
                      ++||||||||+|+|||+++++       +|++++++++||+++|++++++.|+..
T Consensus       289 ~vVDTtGAGDaF~agfl~~l~-------~g~~~~~al~~a~~aAa~~v~~~Ga~~  336 (345)
T PTZ00247        289 KIVDTNGAGDAFVGGFLAQYA-------NGKDIDRCVEAGHYSAQVIIQHNGCTY  336 (345)
T ss_pred             CccCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            489999999999999999999       999999999999999999999999853

>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor

Probab=99.52  E-value=2.4e-14  Score=99.52  Aligned_cols=47  Identities=23%  Similarity=0.310  Sum_probs=45.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV   60 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~   60 (82)
                      ++||||||||+|+|||+++++       +|+++++|+++|+++|++++++.|+.
T Consensus       264 ~vvDttGAGDaf~ag~l~~l~-------~g~~~~~a~~~a~~~Aa~~v~~~G~~  310 (312)
T cd01168         264 KIVDTNGAGDAFAGGFLYGLV-------QGEPLEECIRLGSYAAAEVIQQLGPR  310 (312)
T ss_pred             CcccCCchHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            589999999999999999999       99999999999999999999999974

The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.

>PLN02548 adenosine kinase

Probab=99.51  E-value=2e-14  Score=100.94  Aligned_cols=48  Identities=23%  Similarity=0.264  Sum_probs=45.6

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVR   61 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~   61 (82)
                      ++||||||||+|+|||+++++       +++++++++++|+++|++++++.|+..
T Consensus       278 ~vvDttGAGDaF~ag~l~~l~-------~g~~l~eal~~a~aaAa~~v~~~G~~~  325 (332)
T PLN02548        278 KLVDTNGAGDAFVGGFLSQLV-------QGKDIEECVRAGNYAANVIIQRSGCTY  325 (332)
T ss_pred             ccccCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            589999999999999999999       999999999999999999999999753

>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose

Probab=99.51  E-value=1.2e-14  Score=100.16  Aligned_cols=50  Identities=26%  Similarity=0.237  Sum_probs=46.9

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGF   63 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~   63 (82)
                      ++||||||||+|+|||+++++       +++++++++++|+++|+.++++.|+....
T Consensus       249 ~vvdttGAGDaf~ag~i~~l~-------~g~~~~~al~~a~a~Aa~~~~~~g~~~~~  298 (304)
T cd01172         249 EVYDVTGAGDTVIATLALALA-------AGADLEEAAFLANAAAGVVVGKVGTAPVT  298 (304)
T ss_pred             CCCCCcCccHHHHHHHHHHHH-------cCCCHHHHHHHHHHHhheeeecCCCCCcC
Confidence            589999999999999999999       99999999999999999999999986543

LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.

>PRK09813 fructoselysine 6-kinase; Provisional

Probab=99.51  E-value=2.9e-14  Score=97.08  Aligned_cols=46  Identities=22%  Similarity=0.219  Sum_probs=44.4

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA   59 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~   59 (82)
                      ++||||||||+|.|||++++.       +++++++++++|+++|+++++++|+
T Consensus       214 ~~vDttGAGDaF~ag~i~~~~-------~g~~~~~al~~a~~~aa~~~~~~G~  259 (260)
T PRK09813        214 TVVDTMGAGDSFIAGFLCGWL-------AGMTLPQAMAQGTACAAKTIQYHGA  259 (260)
T ss_pred             CCCCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhccCC
Confidence            589999999999999999999       9999999999999999999999985

>TIGR02152 D_ribokin_bact ribokinase

Probab=99.51  E-value=3.1e-14  Score=97.83  Aligned_cols=56  Identities=29%  Similarity=0.323  Sum_probs=52.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESAT   69 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i   69 (82)
                      .++||+||||+|.|||+++++       +++++++++++|+++|+.++++.|+...+|+++++
T Consensus       237 ~~vdt~GAGDaf~Ag~l~~l~-------~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~~  292 (293)
T TIGR02152       237 KAVDTTAAGDTFNGAFAVALA-------EGKSLEDAIRFANAAAAISVTRKGAQSSIPYLEEV  292 (293)
T ss_pred             ceeCCCCcHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHcccCcccCCCChHHc
Confidence            589999999999999999999       89999999999999999999999997777877765

This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.

>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like

Probab=99.50  E-value=3.6e-14  Score=96.31  Aligned_cols=46  Identities=22%  Similarity=0.244  Sum_probs=44.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhh-HHHHHHHHHHHHHHHHhhcCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDV-LQRQLRFAVAAGIIAQWTIGA   59 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~-~~~al~~a~a~aa~~~~~~G~   59 (82)
                      +++|||||||+|+|||+++++       +|++ +++++++|+++|++++++.|+
T Consensus       217 ~~vDttGAGDaf~ag~i~~l~-------~g~~~~~~al~~a~~~aa~~~~~~G~  263 (264)
T cd01940         217 EVVDTLGAGDSFIAGFLLSLL-------AGGTAIAEAMRQGAQFAAKTCGHEGA  263 (264)
T ss_pred             CCCCCCCchHHHHHHHHHHHH-------hCCchHHHHHHHHHHHHHHHhcccCC
Confidence            589999999999999999999       8998 999999999999999999986

Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.

>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases

Probab=99.49  E-value=4.5e-14  Score=95.99  Aligned_cols=46  Identities=24%  Similarity=0.335  Sum_probs=44.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA   59 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~   59 (82)
                      +++|||||||+|+|||+++++       +++++++++++|+++|+.++++.|+
T Consensus       219 ~vvDttGAGDaF~ag~l~~l~-------~g~~~~~al~~a~~~Aa~~v~~~G~  264 (265)
T cd01947         219 KVPDSTGAGDSFAAGFIYGLL-------KGWSIEEALELGAQCGAICVSHFGP  264 (265)
T ss_pred             CCCCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhccCC
Confidence            589999999999999999999       9999999999999999999999985

Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.

>PRK15074 inosine/guanosine kinase; Provisional

Probab=99.49  E-value=4.5e-14  Score=103.86  Aligned_cols=54  Identities=20%  Similarity=0.349  Sum_probs=48.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchh--------------------hHHHHHHHHHHHHHHHHhhcCC--CCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQD--------------------VLQRQLRFAVAAGIIAQWTIGA--VRGFP   64 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~--------------------~~~~al~~a~a~aa~~~~~~G~--~~~~~   64 (82)
                      ++||||||||+|+|||||+|.       +|+                    ++.+|+++|+++|+.++++.|+  ..++|
T Consensus       349 ~~vDttGAGD~f~~gfl~~l~-------~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~vi~~~G~~~~~~~p  421 (434)
T PRK15074        349 KIMNTNGAGDGALSALLHDIT-------ANSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVSYEVLNQHSPRLSRGLP  421 (434)
T ss_pred             cceeCCCcHHHHHHHHHHHHH-------CCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Confidence            589999999999999999999       665                    7999999999999999999998  55667


Q ss_pred             CHH
Q 040065           65 TES   67 (82)
Q Consensus        65 ~~~   67 (82)
                      +.+
T Consensus       422 ~~~  424 (434)
T PRK15074        422 ERE  424 (434)
T ss_pred             Ccc
Confidence            654

>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP

Probab=99.48  E-value=8.1e-14  Score=95.47  Aligned_cols=52  Identities=33%  Similarity=0.442  Sum_probs=49.0

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPT   65 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~   65 (82)
                      .++||+||||+|+|||+++++       +|.++++++++|+++|+.++++.|+...+|+
T Consensus       241 ~~vdt~GaGD~F~ag~l~~l~-------~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~  292 (292)
T cd01174         241 KAVDTTGAGDTFIGALAAALA-------RGLSLEEAIRFANAAAALSVTRPGAQPSIPT  292 (292)
T ss_pred             ccCCCCCcHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCcCCCCCCCC
Confidence            589999999999999999999       9999999999999999999999999877763

This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.

>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose

Probab=99.48  E-value=4.5e-14  Score=97.29  Aligned_cols=46  Identities=24%  Similarity=0.265  Sum_probs=43.4

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhh-HHHHHHHHHHHHHHHHhhcCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDV-LQRQLRFAVAAGIIAQWTIGA   59 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~-~~~al~~a~a~aa~~~~~~G~   59 (82)
                      ++|||+||||+|+|||+++++       ++++ +++|+++|+++|++++++.|.
T Consensus       243 ~vvDt~GAGDsf~agfl~~l~-------~g~~~~~~a~~~a~a~aa~~i~~~G~  289 (290)
T cd01939         243 RVVDTLGAGDTFNAAVIYALN-------KGPDDLSEALDFGNRVASQKCTGVGF  289 (290)
T ss_pred             CcccCCCchHHHHHHHHHHHH-------cCCccHHHHHHHHHHHHHHHHhhhcC
Confidence            489999999999999999999       8995 999999999999999999874

KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.

>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]

Probab=99.48  E-value=1e-13  Score=98.37  Aligned_cols=65  Identities=34%  Similarity=0.472  Sum_probs=61.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPS   80 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~   80 (82)
                      .+|+|+||||+|+|||+++++       +++++++++++|+++|+.++++.+.  ..++.++++++++++.+++
T Consensus       244 ~vvstVGAGDs~VAGf~~~~~-------~~~~~e~~l~~avA~g~a~~~~~~~--~~~~~~~~~~~~~~v~v~~  308 (310)
T COG1105         244 QVVSTVGAGDSMVAGFLAGLL-------KGKSLEEALRFAVACGAAAASQKGT--GIPDLDQLKKIYAQVTVEK  308 (310)
T ss_pred             ceecCcCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHhhheEEEe
Confidence            599999999999999999999       9999999999999999999999986  7899999999999988765

>cd01944 YegV_kinase_like YegV-like sugar kinase

Probab=99.47  E-value=6.3e-14  Score=96.29  Aligned_cols=45  Identities=27%  Similarity=0.286  Sum_probs=43.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIG   58 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G   58 (82)
                      .++|||||||+|+|||+++++       +|+++++++++|+++|+.++++.|
T Consensus       245 ~vvDt~GAGDaf~ag~l~~~~-------~g~~~~~a~~~a~a~aa~~~~~~G  289 (289)
T cd01944         245 KAVDTIGAGDTHAGGMLAGLA-------KGMSLADAVLLANAAAAIVVTRSG  289 (289)
T ss_pred             CCccCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHhhhccCC
Confidence            589999999999999999999       999999999999999999999876

Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.

>cd01943 MAK32 MAK32 kinase

Probab=99.46  E-value=2.2e-14  Score=101.50  Aligned_cols=46  Identities=17%  Similarity=0.245  Sum_probs=44.4

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA   59 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~   59 (82)
                      ++||||||||+|+|||+++++       +++++++++++|+++|++++++.|.
T Consensus       259 ~vvDttGAGDaF~agfl~~l~-------~g~~~~~al~~a~a~Aa~~v~~~G~  304 (328)
T cd01943         259 KVVDPTGGGNSFLGGFAAGLA-------LTKSIDEACIYGSVAASFAIEQVGL  304 (328)
T ss_pred             cccCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHccCCC
Confidence            589999999999999999999       9999999999999999999999994

MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.

>cd01942 ribokinase_group_A Ribokinase-like subgroup A

Probab=99.45  E-value=1.2e-13  Score=94.14  Aligned_cols=46  Identities=33%  Similarity=0.311  Sum_probs=44.3

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA   59 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~   59 (82)
                      ++|||+||||+|+|||+++++       ++.++++++++|+++|++++++.|+
T Consensus       233 ~vvDttGAGDaf~a~~i~~l~-------~g~~l~~al~~a~~~Aa~~~~~~G~  278 (279)
T cd01942         233 KVVDTTGAGDAFRAGFLYGLL-------RGYDLEESLRLGNLAASLKVERRGA  278 (279)
T ss_pred             CCcCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcccCC
Confidence            589999999999999999999       9999999999999999999999985

Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.

>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate

Probab=99.43  E-value=1.3e-13  Score=94.52  Aligned_cols=46  Identities=41%  Similarity=0.551  Sum_probs=44.0

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchh-------hHHHHHHHHHHHHHHHHhhcCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQD-------VLQRQLRFAVAAGIIAQWTIGA   59 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~-------~~~~al~~a~a~aa~~~~~~G~   59 (82)
                      +++|||||||+|+|||+++++       +|.       ++++++++|+++|+.+|++.|+
T Consensus       242 ~vvDttGAGD~f~a~~~~~l~-------~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~G~  294 (295)
T cd01167         242 EVVDTTGAGDAFVAGLLAQLL-------SRGLLALDEDELAEALRFANAVGALTCTKAGA  294 (295)
T ss_pred             ceeeCCCccHHHHHHHHHHHH-------hCCcccccHHHHHHHHHHHHHhhHHHhcccCC
Confidence            589999999999999999999       888       9999999999999999999986

This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.

>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

Probab=99.42  E-value=3.3e-13  Score=98.95  Aligned_cols=60  Identities=22%  Similarity=0.248  Sum_probs=55.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQ   75 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~   75 (82)
                      .++||+||||+|.|||+++++       +|+++++++++|+++|++++++.|+..  ++.++++++++.
T Consensus       255 ~vvDttGAGDaF~aa~~~~l~-------~g~~~~~al~~A~a~Aa~~v~~~G~~~--~~~~~l~~~l~~  314 (473)
T PRK11316        255 EVYDVTGAGDTVISVLAAALA-------AGNSLEEACALANAAAGVVVGKLGTST--VSPIELENALRG  314 (473)
T ss_pred             CCCCCCCCcHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHhhcccCCCcc--CCHHHHHHHHhc
Confidence            479999999999999999999       999999999999999999999999743  688999888874

>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)

Probab=99.39  E-value=4.5e-13  Score=91.75  Aligned_cols=46  Identities=37%  Similarity=0.386  Sum_probs=44.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA   59 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~   59 (82)
                      .++||+||||+|+|||++++.       +|.++++++++|+++|+.++++.|+
T Consensus       248 ~~vdt~GAGD~f~a~~~~~l~-------~g~~~~~a~~~a~~~aa~~i~~~G~  293 (294)
T cd01166         248 EVVDTTGAGDAFAAGFLAGLL-------EGWDLEEALRFANAAAALVVTRPGD  293 (294)
T ss_pred             ccccCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            589999999999999999999       9999999999999999999999985

KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.

>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases

Probab=99.37  E-value=7.1e-13  Score=91.18  Aligned_cols=46  Identities=33%  Similarity=0.484  Sum_probs=43.9

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA   59 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~   59 (82)
                      +++||+||||+|.|||++++.       +|+++++++++|+++|++++++.|+
T Consensus       243 ~vvDttGAGDaf~a~~i~~l~-------~g~~~~~a~~~A~~~Aa~~~~~~G~  288 (289)
T cd01164         243 KVVSTVGAGDSMVAGFVAGLA-------QGLSLEEALRLAVAAGSATAFSPGT  288 (289)
T ss_pred             cccCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCccC
Confidence            489999999999999999999       9999999999999999999999885

FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.

>cd01941 YeiC_kinase_like YeiC-like sugar kinase

Probab=99.34  E-value=1.2e-12  Score=89.61  Aligned_cols=43  Identities=35%  Similarity=0.425  Sum_probs=40.7

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT   56 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~   56 (82)
                      ++|||+||||+|.|||+++++       +|+++++++++|+++|+++|+.
T Consensus       246 ~~vDttGAGDaf~a~~~~~l~-------~g~~~~~al~~a~~~Aa~~~~~  288 (288)
T cd01941         246 TVVNVTGAGDAFVAGLVAGLL-------EGMSLDDSLRFAQAAAALTLES  288 (288)
T ss_pred             cceeCCCcHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999       9999999999999999999863

Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.

>cd01946 ribokinase_group_C Ribokinase-like subgroup C

Probab=99.31  E-value=2.8e-12  Score=87.91  Aligned_cols=50  Identities=18%  Similarity=0.327  Sum_probs=42.2

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA   59 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~   59 (82)
                      ++|||||||+|+|||++++.+... . ...++++++++|+++|++++++.|+
T Consensus       226 ~vDttGAGDaF~Agfl~~l~~~~~-~-~~~~~~~a~~~a~~~aa~~~~~~G~  275 (277)
T cd01946         226 VFDPTGAGDTFAGGFIGYLASQKD-T-SEANMRRAIIYGSAMASFCVEDFGT  275 (277)
T ss_pred             cCCCCCchHHHHHHHHHHHHhCCC-c-chhhHHHHHHHhHHHHhhhhhhcCC
Confidence            789999999999999999983210 0 2257999999999999999999986

Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.

>cd01937 ribokinase_group_D Ribokinase-like subgroup D

Probab=99.26  E-value=8.2e-12  Score=84.43  Aligned_cols=42  Identities=29%  Similarity=0.256  Sum_probs=39.7

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQW   55 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~   55 (82)
                      .++||+||||+|+|||+++++       +|+++++++++|+++|+++++
T Consensus       213 ~~vdt~GAGD~f~a~~~~~l~-------~g~~~~~a~~~a~~~aa~~i~  254 (254)
T cd01937         213 DVVDPTGAGDVFLAAFLYSRL-------SGKDIKEAAEFAAAAAAKFIE  254 (254)
T ss_pred             eeccCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhC
Confidence            479999999999999999999       899999999999999999874

Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.

>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]

Probab=99.25  E-value=3.3e-12  Score=88.59  Aligned_cols=52  Identities=19%  Similarity=0.227  Sum_probs=47.2

Q ss_pred             CCCCCCccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065            2 VLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA   59 (82)
Q Consensus         2 ~~~~~~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~   59 (82)
                      -.++|++|||+|+||+|.|||+|+++.      ++.++.||++||+++|+.++...|-
T Consensus       247 a~~ppkvVD~lg~~DtF~A~vIyA~lk------~~r~l~eAvdfg~rvas~Kl~g~Gf  298 (308)
T KOG2947|consen  247 AFKPPKVVDTLGAGDTFNAGVIYALLK------QGRSLAEAVDFGNRVASKKLGGQGF  298 (308)
T ss_pred             CCCCccceeeccCCCcchHHHHHHHHH------hhhhHHHHHHHHHHhhhcccccccc
Confidence            367889999999999999999999763      7889999999999999999998873

>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]

Probab=99.16  E-value=3.3e-11  Score=86.03  Aligned_cols=50  Identities=26%  Similarity=0.362  Sum_probs=46.6

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPT   65 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~   65 (82)
                      ++|||+||||+|++||++++.       +|.++++|++.|.-+++.++...|+  .+|+
T Consensus       289 ~ivDtnGAGDaFvgGFl~~l~-------qg~~l~~cir~g~~aa~~vi~~~G~--~~p~  338 (343)
T KOG2854|consen  289 EIVDTNGAGDAFVGGFLSQLV-------QGKSLEECIRAGSYAASHVIRRVGC--TVPE  338 (343)
T ss_pred             eeeeCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHhhheeeccCC--CCCC
Confidence            599999999999999999999       9999999999999999999999997  4454

>TIGR00687 pyridox_kin pyridoxal kinase

Probab=98.90  E-value=1.8e-09  Score=74.87  Aligned_cols=36  Identities=28%  Similarity=0.383  Sum_probs=34.2

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHH
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAG   50 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~a   50 (82)
                      ++||+||||+|+|||+++++       +|.++++++++|+++-
T Consensus       215 ~~d~~GaGD~f~A~~l~~l~-------~g~~~~~al~~A~~~v  250 (286)
T TIGR00687       215 MRQPVGTGDLIAALLLATLL-------HGNSLKEALEKTVSAV  250 (286)
T ss_pred             CCCCCChHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHH
Confidence            58999999999999999999       9999999999999993

ThiD and related proteins form an outgroup.

>PRK12413 phosphomethylpyrimidine kinase; Provisional

Probab=98.76  E-value=1.6e-08  Score=68.88  Aligned_cols=44  Identities=11%  Similarity=0.056  Sum_probs=39.6

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI   57 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~   57 (82)
                      ..+|++||||+|.|||++++.       +|+++++++++|.++-..+++..
T Consensus       200 ~~~~~~GaGDaf~a~~~~~l~-------~g~~l~ea~~~A~~~~~~~l~~~  243 (253)
T PRK12413        200 LEKNNIGAGCTFASSIASQLV-------KGKSPLEAVKNSKDFVYQAIQQS  243 (253)
T ss_pred             cCCCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999       99999999999998877777653

>PRK07105 pyridoxamine kinase; Validated

Probab=98.75  E-value=1.4e-08  Score=70.40  Aligned_cols=46  Identities=22%  Similarity=0.125  Sum_probs=41.3

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA   59 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~   59 (82)
                      ..+|++||||+|.|||+++++       +|+++++++++|.++...++.....
T Consensus       213 ~~~~~~GaGD~f~aa~~~~l~-------~g~~l~~av~~A~~~~~~~i~~~~~  258 (284)
T PRK07105        213 IPAHYPGTGDIFTSVITGSLL-------QGDSLPIALDRAVQFIEKGIRATLG  258 (284)
T ss_pred             cCCCcCChhHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            358999999999999999999       9999999999999999888876543

>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP

Probab=98.73  E-value=2.2e-08  Score=68.11  Aligned_cols=42  Identities=21%  Similarity=0.152  Sum_probs=37.8

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT   56 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~   56 (82)
                      ++|++||||+|.|||++++.       +|+++++++++|++.-..++..
T Consensus       210 ~~~~~GaGD~f~a~~~~~l~-------~g~~~~~a~~~A~~~~~~~i~~  251 (254)
T cd01173         210 PAYFNGTGDLFAALLLARLL-------KGKSLAEALEKALNFVHEVLEA  251 (254)
T ss_pred             CCCcCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999       9999999999999887666543

Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.

>PRK08573 phosphomethylpyrimidine kinase; Provisional

Probab=98.67  E-value=9.1e-08  Score=70.64  Aligned_cols=43  Identities=19%  Similarity=0.006  Sum_probs=39.9

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT   56 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~   56 (82)
                      .++||+||||+|.|+|+++++       +|+++++++++|+.+...+++.
T Consensus       202 ~~~dt~GAGDaFsAa~aa~l~-------~G~~l~eAl~~A~~~~~~al~~  244 (448)
T PRK08573        202 ESGCTHGTGCSFSAAIAAGLA-------KGLDPEEAIKTAKKFITMAIKY  244 (448)
T ss_pred             CCCCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999       9999999999999999888883

>PRK05756 pyridoxamine kinase; Validated

Probab=98.66  E-value=4e-08  Score=68.24  Aligned_cols=41  Identities=24%  Similarity=0.217  Sum_probs=38.0

Q ss_pred             cCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065            9 CDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT   56 (82)
Q Consensus         9 vDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~   56 (82)
                      +|++||||+|.|+|+++++       +|+++++++++|++....++..
T Consensus       215 v~~~GaGD~f~a~~~a~l~-------~g~~~~~al~~A~~~~~~~i~~  255 (286)
T PRK05756        215 RQPVGVGDLTSALFLARLL-------QGGSLEEALEHTTAAVYEVMAR  255 (286)
T ss_pred             CCCCChHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999       9999999999999988877765

>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase

Probab=98.65  E-value=5.6e-08  Score=66.49  Aligned_cols=44  Identities=23%  Similarity=0.051  Sum_probs=40.5

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI   57 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~   57 (82)
                      .++|++|+||+|.|+|++.+.       +|+++++++++|.++....+...
T Consensus       198 ~~~d~~GaGD~f~aalaa~la-------~g~~l~eA~~~A~~~~~~~i~~~  241 (254)
T TIGR00097       198 ETKNTHGTGCTLSAAIAANLA-------KGLSLKEAVKEAKEFVTGAIRYG  241 (254)
T ss_pred             CCCCCCChHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHh
Confidence            368999999999999999999       99999999999999998888763

This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.

>PRK12412 pyridoxal kinase; Reviewed

Probab=98.61  E-value=8.4e-08  Score=66.28  Aligned_cols=44  Identities=20%  Similarity=0.104  Sum_probs=39.8

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI   57 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~   57 (82)
                      ..+||+||||+|.|+|+++++       +|+++++++++|.++...++...
T Consensus       204 ~~~~t~GaGD~f~aa~aa~l~-------~g~~l~eA~~~A~~~~~~~i~~~  247 (268)
T PRK12412        204 DTTNTHGAGCTYSAAITAELA-------KGKPVKEAVKTAKEFITAAIRYS  247 (268)
T ss_pred             CCCCCCchHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999       99999999999999988777653

>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed

Probab=98.60  E-value=8.7e-08  Score=65.64  Aligned_cols=43  Identities=23%  Similarity=0.144  Sum_probs=39.8

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI   57 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~   57 (82)
                      .+|++|+||+|.|+|+++++       +|.++.+++++|.+....++.+.
T Consensus       207 ~~~~~GaGD~f~a~l~~~l~-------~g~~l~~A~~~A~~~~~~~i~~~  249 (266)
T PRK06427        207 TKNTHGTGCTLSAAIAAELA-------KGASLLDAVQTAKDYVTRAIRHA  249 (266)
T ss_pred             CCCCCChHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHH
Confidence            56999999999999999999       99999999999999998888764

>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1

Probab=98.50  E-value=2.3e-07  Score=62.43  Aligned_cols=41  Identities=24%  Similarity=0.167  Sum_probs=37.0

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHh
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQW   55 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~   55 (82)
                      ++|++|+||+|.|+|++++.       +|.++.+++++|.+.-..++.
T Consensus       200 ~~~~~GaGD~f~a~l~a~l~-------~g~~~~~A~~~A~~~~~~~i~  240 (242)
T cd01169         200 TKNTHGTGCTLSSAIAANLA-------KGLSLEEAVREAKEYVTQAIR  240 (242)
T ss_pred             CCCCCChHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999       999999999999988765553

The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.

>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed

Probab=98.39  E-value=6.5e-07  Score=62.35  Aligned_cols=43  Identities=19%  Similarity=0.147  Sum_probs=37.7

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT   56 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~   56 (82)
                      ..+|++|+||+|.|+|++++.       +|.++++++++|...-..++..
T Consensus       224 ~~~~~~GaGD~faa~~~a~l~-------~g~~l~~Av~~A~~~v~~~i~~  266 (281)
T PRK08176        224 VDTDLKGTGDLFCAELVSGLL-------KGKALTDAAHRAGLRVLEVMRY  266 (281)
T ss_pred             cCCCCCChhHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHH
Confidence            467999999999999999999       9999999999999776655543

>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=98.39  E-value=1.4e-07  Score=69.44  Aligned_cols=56  Identities=25%  Similarity=0.266  Sum_probs=51.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQN   71 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~   71 (82)
                      .|-|-|||||+.+|.|..++.       .|.++++|..+||++|+.++.+.|+  ...+.+|+..
T Consensus       254 EVyDVTGAGDTVIa~la~~la-------aG~s~~eAc~lAN~AagiVVgKlGT--atvs~~EL~n  309 (467)
T COG2870         254 EVYDVTGAGDTVIAVLAAALA-------AGASLEEACELANAAAGIVVGKLGT--ATVSPEELEM  309 (467)
T ss_pred             eeeeccCCCchHHHHHHHHHH-------cCCCHHHHHHHhhhhcceEEeeccc--eeecHHHHHh
Confidence            578999999999999999999       9999999999999999999999997  4567777765

>PRK12616 pyridoxal kinase; Reviewed

Probab=98.37  E-value=8.1e-07  Score=61.50  Aligned_cols=42  Identities=19%  Similarity=0.071  Sum_probs=38.3

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT   56 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~   56 (82)
                      .+|++|+||+|.|+|++++.       +|.++++++++|......++..
T Consensus       208 ~~~t~GaGD~fsaalaa~l~-------~g~~l~~Av~~A~~~~~~~i~~  249 (270)
T PRK12616        208 TPYTHGAGCTFSAAVTAELA-------KGSEVKEAIYAAKEFITAAIKE  249 (270)
T ss_pred             CCCCCcHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHH
Confidence            56889999999999999999       9999999999999888777765

>PTZ00347 phosphomethylpyrimidine kinase; Provisional

Probab=98.07  E-value=7.3e-06  Score=61.27  Aligned_cols=42  Identities=19%  Similarity=0.109  Sum_probs=37.4

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT   56 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~   56 (82)
                      ++|++|+||+|.|+|++++.       +|.++.+++++|.+.-...+..
T Consensus       437 ~~~~~GaGD~fsaaiaa~la-------~G~~l~eAv~~A~~~v~~~i~~  478 (504)
T PTZ00347        437 TINTHGTGCTLASAISSFLA-------RGYTVPDAVERAIGYVHEAIVR  478 (504)
T ss_pred             CCCCCChHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHh
Confidence            68999999999999999999       9999999999998776665554

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=98.01  E-value=9.4e-06  Score=60.65  Aligned_cols=43  Identities=16%  Similarity=0.099  Sum_probs=39.5

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI   57 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~   57 (82)
                      .+|++|+||+|.|+|++.+.       +|+++++++++|......++...
T Consensus       212 ~~~t~GaGD~fsaaiaa~l~-------~G~~l~eAv~~A~~~v~~ai~~~  254 (502)
T PLN02898        212 TRNTHGTGCTLASCIAAELA-------KGSDMLSAVKVAKRYVETALEYS  254 (502)
T ss_pred             CCCCCchhhhHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHhh
Confidence            47899999999999999999       99999999999999988888764

>cd01171 YXKO-related B

Probab=97.92  E-value=2.3e-05  Score=53.37  Aligned_cols=44  Identities=20%  Similarity=0.026  Sum_probs=37.7

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI   57 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~   57 (82)
                      ..++|+|+||+|.|.+.+.+.       ++.++.+++++|+.+.+.+....
T Consensus       193 ~~~~~~GaGD~lag~iaa~la-------~g~~~~eA~~~A~~~~~~a~~~~  236 (254)
T cd01171         193 PGLATGGSGDVLAGIIAALLA-------QGLSPLEAAALAVYLHGLAGDLA  236 (254)
T ss_pred             cccccCchHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHH
Confidence            468999999999777777777       89999999999998888887754

subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.

>PTZ00344 pyridoxal kinase; Provisional

Probab=97.89  E-value=2.7e-05  Score=54.57  Aligned_cols=41  Identities=17%  Similarity=0.053  Sum_probs=34.1

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT   56 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~   56 (82)
                      -++++|+||+|.|+|++.+.       ++ ++.+++++|.+.-..++..
T Consensus       218 ~~~~~GaGD~f~A~~~a~l~-------~g-~~~~a~~~A~a~~~~~i~~  258 (296)
T PTZ00344        218 EGRYTGTGDLFAALLLAFSH-------QH-PMDLAVGKAMGVLQDIIKA  258 (296)
T ss_pred             CCCCCCchHHHHHHHHHHHh-------cC-CHHHHHHHHHHHHHHHHHH
Confidence            45789999999999997777       77 9999999998877655554

>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional

Probab=97.80  E-value=4.2e-05  Score=57.67  Aligned_cols=37  Identities=24%  Similarity=0.250  Sum_probs=33.5

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHH
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGI   51 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa   51 (82)
                      ++||+|+||+|.|+|++.+.       +|.++.+++++|.+.-.
T Consensus       231 ~~~t~GaGD~fsaalaa~La-------~G~~l~eAv~~A~~~v~  267 (530)
T PRK14713        231 TRNTHGTGCSLSSALATRLG-------RGGDWAAALRWATAWLH  267 (530)
T ss_pred             CCCCCcHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHH
Confidence            57999999999999999999       99999999999987433

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=97.75  E-value=5.4e-05  Score=59.31  Aligned_cols=42  Identities=19%  Similarity=0.210  Sum_probs=38.3

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT   56 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~   56 (82)
                      .+||+|+||+|.|+|++.+.       +|.++++++++|...-..++..
T Consensus       443 ~~~t~GaGDtfsaaiaa~La-------~G~sl~eAv~~A~~~v~~~i~~  484 (755)
T PRK09517        443 TTNSHGTGCSLSAALATLIA-------AGESVEKALEWATRWLNEALRH  484 (755)
T ss_pred             CCCCcChHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHh
Confidence            67999999999999999999       9999999999999887777755

>PLN02978 pyridoxal kinase

Probab=96.86  E-value=0.0026  Score=45.02  Aligned_cols=40  Identities=25%  Similarity=0.213  Sum_probs=31.3

Q ss_pred             CccchHHHHHHHHHHHHhcCCccccch-hhHHHHHHHHHHHHHHHHhh
Q 040065           10 DRTGSGDAVVAAILRKLTTCPEMFENQ-DVLQRQLRFAVAAGIIAQWT   56 (82)
Q Consensus        10 DttGAGDaf~agfl~~l~~~~~~~~~~-~~~~~al~~a~a~aa~~~~~   56 (82)
                      .+.|+||+|.|.+++.+.       ++ .++++++++|...-..++..
T Consensus       227 ~~~GtGD~fsA~laa~l~-------~g~~~l~~A~~~A~~~v~~~i~~  267 (308)
T PLN02978        227 YFTGTGDLMAALLLGWSH-------KYPDNLDKAAELAVSSLQAVLRR  267 (308)
T ss_pred             CCCCchHHHHHHHHHHHh-------cCCcCHHHHHHHHHHHHHHHHHH
Confidence            358999999998777777       66 68999999998766555544

>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related

Probab=96.82  E-value=0.0073  Score=41.74  Aligned_cols=59  Identities=17%  Similarity=0.047  Sum_probs=37.0

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHH---HHHHHHHHhhc-CCCCCCCCHHHHHHHHHh
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFA---VAAGIIAQWTI-GAVRGFPTESATQNLKEQ   75 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a---~a~aa~~~~~~-G~~~~~~~~~~i~~~~~~   75 (82)
                      ..+++|+||+ ++|++.+++-      ++.++.+++..|   ...++..+.+. |.. . .+..++.+.+.+
T Consensus       206 ~~~~~GaGD~-lag~iaa~la------~g~~~~~A~~~a~~~~~~a~~~~~~~~g~~-~-~~~~dl~~~i~~  268 (272)
T TIGR00196       206 ALAKGGTGDV-LAGLIGGLLA------QNLDPFDAACNAAFAHGLAGDLALKNHGAY-G-LTALDLIEKIPR  268 (272)
T ss_pred             ccCCCCchHH-HHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHhcCCC-C-cCHHHHHHHHHH
Confidence            5678999999 5555555541      778888998766   56666655444 531 2 345666555543

The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.

>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2

Probab=96.27  E-value=0.011  Score=40.38  Aligned_cols=40  Identities=20%  Similarity=0.052  Sum_probs=34.8

Q ss_pred             cCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHh
Q 040065            9 CDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQW   55 (82)
Q Consensus         9 vDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~   55 (82)
                      .+..|.||.|.+.|+..+.       +|++++++++.|...-..++.
T Consensus       194 ~~~~GTGd~fss~laa~l~-------~g~~l~~Av~~A~~~v~~~i~  233 (246)
T PF08543_consen  194 GSFHGTGDLFSSALAAFLA-------KGYSLEEAVEKAKNFVRRAIK  233 (246)
T ss_dssp             SGCTTHHHHHHHHHHHHHH-------TTSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCchhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999       999999999999876655554

7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....

>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz

Probab=95.77  E-value=0.058  Score=37.01  Aligned_cols=40  Identities=28%  Similarity=0.037  Sum_probs=32.0

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHH
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQ   54 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~   54 (82)
                      +.+..|+||+|.|.+...+.       +|.++.+++..|...-..+.
T Consensus       181 ~~~v~GtGdtLa~aiAa~LA-------~g~~~~~A~~~A~~~~~~a~  220 (242)
T cd01170         181 LTKITGTGCLLGAVIAAFLA-------VGDDPLEAAVSAVLVYGIAG  220 (242)
T ss_pred             ccCCCchHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHH
Confidence            44568999999999999999       88899999888865444443

A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.

>PTZ00493 phosphomethylpyrimidine kinase; Provisional

Probab=95.09  E-value=0.056  Score=38.97  Aligned_cols=40  Identities=15%  Similarity=0.007  Sum_probs=33.9

Q ss_pred             CccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065           10 DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT   56 (82)
Q Consensus        10 DttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~   56 (82)
                      ++-|.||+|.+++++.|+       +|.++.++++.|...-..++..
T Consensus       246 ~~hGTGc~fASAIAa~LA-------~G~~l~~Av~~A~~fv~~aI~~  285 (321)
T PTZ00493        246 DIHGTGCTLSTAIACYLA-------KKHNILQSCIESKKYIYNCIRY  285 (321)
T ss_pred             CCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999       9999999999998665555544

>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]

Probab=95.02  E-value=0.065  Score=38.09  Aligned_cols=41  Identities=27%  Similarity=0.188  Sum_probs=35.3

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHh
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQW   55 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~   55 (82)
                      ..+.+|-||.|.|-|+.+++       +|.++.+++..+..+-...+.
T Consensus       209 ~~~~~GtGDL~sallla~lL-------~g~~~~~al~~~~~~V~evl~  249 (281)
T COG2240         209 PFIPNGTGDLFSALLLARLL-------EGLSLTQALERATAAVYEVLQ  249 (281)
T ss_pred             CCCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHH
Confidence            34589999999999999999       999999999999877665555

>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]

Probab=94.54  E-value=0.01  Score=45.08  Aligned_cols=43  Identities=14%  Similarity=0.173  Sum_probs=36.4

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT   56 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~   56 (82)
                      ++|+-.||||+|++||+.++.       .+.++.+++.-+..|+-...+.
T Consensus       558 n~vsvsgaGdsf~~g~i~~l~-------~~~~v~es~~gg~~~~ralls~  600 (614)
T KOG3009|consen  558 NVVSVSGAGDSFNSGVIAGLA-------HNKTVVESLQGGQECARALLST  600 (614)
T ss_pred             ceeEeccCCcccccceeehhh-------cCcchHhhccccHHHHHHHHhc
Confidence            478889999999999999999       8899999999986666555544

>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]

Probab=93.19  E-value=0.2  Score=35.29  Aligned_cols=39  Identities=23%  Similarity=0.172  Sum_probs=34.7

Q ss_pred             CccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHh
Q 040065           10 DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQW   55 (82)
Q Consensus        10 DttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~   55 (82)
                      +|-|.|.+|.+++.+.|.       +|.++.++++.|-..-..++.
T Consensus       206 ~tHGTGCTlSaAIaa~LA-------~G~~l~~AV~~Ak~fv~~AI~  244 (263)
T COG0351         206 NTHGTGCTLSAAIAANLA-------KGLSLEEAVKKAKEFVTRAIR  244 (263)
T ss_pred             CCCCccHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHh
Confidence            467999999999999999       999999999999877766666

>PRK09355 hydroxyethylthiazole kinase; Validated

Probab=92.52  E-value=0.36  Score=33.45  Aligned_cols=39  Identities=21%  Similarity=0.048  Sum_probs=30.0

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHH
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIA   53 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~   53 (82)
                      ..+.+|+||++.|.+...+.       .+.++.++...|...-..+
T Consensus       185 ~~~v~GtGc~L~~~iaa~lA-------~g~~~~~A~~~A~~~~~~a  223 (263)
T PRK09355        185 MTKVTGTGCLLSAVVAAFAA-------VEKDYLEAAAAACAVYGIA  223 (263)
T ss_pred             cCCcccccHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHH
Confidence            44558999999999999988       7778888887777544444

>TIGR00694 thiM hydroxyethylthiazole kinase

Probab=83.39  E-value=3  Score=28.60  Aligned_cols=31  Identities=16%  Similarity=-0.023  Sum_probs=25.9

Q ss_pred             ccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHH
Q 040065           11 RTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVA   48 (82)
Q Consensus        11 ttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a   48 (82)
                      .+|.||++.+.+...+.       .+.++.++...|..
T Consensus       183 ~~GtGc~LssaIaa~LA-------~g~~~~~A~~~A~~  213 (249)
T TIGR00694       183 ITGSGCLLGSVVAAFCA-------VEEDPLDAAISACL  213 (249)
T ss_pred             CccchHHHHHHHHHHHh-------cCCCHHHHHHHHHH
Confidence            37999999999988888       77888888877763

This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
3ljs_A	338	Fructokinase; fructokianse, PSI2, NYSGXRC, structu	3e-05
2afb_A	351	2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-	5e-05
3ktn_A	346	Carbohydrate kinase, PFKB family; PFKB family,ribo	8e-05
2jg1_A	330	Tagatose-6-phosphate kinase; phosphoryl transfer,	2e-04
2f02_A	323	Tagatose-6-phosphate kinase; LACC, structural geno	2e-04
1tyy_A	339	Putative sugar kinase; ribokinase fold, alpha/beta	3e-04
3ie7_A	320	LIN2199 protein; phosphofructokinases, transferase	5e-04
2ajr_A	331	Sugar kinase, PFKB family; TM0828, possible 1-phos	5e-04
1v1a_A	309	2-keto-3-deoxygluconate kinase; ATP, structural ge	6e-04
2abq_A	306	Fructose 1-phosphate kinase; dimer, structural gen	7e-04
3cqd_A	309	6-phosphofructokinase isozyme 2; phosphofructokina	7e-04
2dcn_A	311	Hypothetical fructokinase; 2-keto-3-deoxygluconate	7e-04

>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} PDB: 3lki_A* Length = 338

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 10  DRTGSGDAVVAAILRKL-------TTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRG 62
           D   +GDA V  +L              +   + + +   LRFA A G +A    GA   
Sbjct: 256 DSNAAGDAFVGGMLYTFAQQFDDAAALIDFCHDPESIVSTLRFAAAVGALAVTRQGAFTA 315

Query: 63  FPTESATQNLKEQ 75
            P  S   +L ++
Sbjct: 316 MPMLSEVLSLIQE 328

>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1 Length = 351

 Score = 38.5 bits (90), Expect = 5e-05
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 7/57 (12%)

Query: 10  DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTE 66
           DR G+GD+   A++             D  Q++  FA AA  +     G       E
Sbjct: 286 DRVGAGDSFAGALIYGS------LMGFD-SQKKAEFAAAASCLKHTIPGDFVVLSIE 335

>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis} Length = 346

 Score = 38.1 bits (89), Expect = 8e-05
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 10  DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESAT 69
           DR G+GDA  A IL          +N   L++ + FA   G++A    G +    T    
Sbjct: 274 DRIGAGDAYAAGILYGY------SQNWS-LEKAVTFATVNGVLAHTIQGDI-PLTTVKQV 325

Query: 70  QNL 72
            ++
Sbjct: 326 NHV 328

>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A* Length = 330

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 12  TGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQN 71
            GSGD+ VA I   +        +++     L+ A   G++         G+   +   +
Sbjct: 270 VGSGDSTVAGITSAIL------NHENDHDL-LKKANTLGMLNAQEAQT--GYVNLNNYDD 320

Query: 72  LKEQVYV 78
           L  Q+ V
Sbjct: 321 LFNQIEV 327

>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A* Length = 323

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 9/67 (13%)

Query: 12  TGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQN 71
            GSGDA +A +   L       ++    +  L++ +AAG+          G       + 
Sbjct: 253 VGSGDATIAGLAYGLA------KDAPAAEL-LKWGMAAGMANAQERMT--GHVDVENVKK 303

Query: 72  LKEQVYV 78
               + V
Sbjct: 304 HLMNIQV 310

>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A* Length = 339

 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 10  DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESAT 69
           D TG+GDA V  +L  L        +  +L   +  A A G +A    GA+   P     
Sbjct: 266 DTTGAGDAFVGGLLFTL--SRANCWDHALLAEAISNANACGAMAVTAKGAMTALPFPDQL 323

Query: 70  QNLKEQ 75
                 
Sbjct: 324 NTFLSS 329

>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A Length = 320

 Score = 35.6 bits (83), Expect = 5e-04
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 9/67 (13%)

Query: 12  TGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQN 71
           TG+GD  V A +  L        N  + +  L+ A            +        A   
Sbjct: 249 TGAGDVFVGAFIAGLA------MNMPITET-LKVATGCSASKVMQQDS--SSFDLEAAGK 299

Query: 72  LKEQVYV 78
           LK QV +
Sbjct: 300 LKNQVSI 306

>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1 Length = 331

 Score = 35.7 bits (83), Expect = 5e-04
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 12  TGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQN 71
            G+GDA VA ++        +    + L+   +F  A+ + A          P   A + 
Sbjct: 269 LGAGDAYVAGMVYYF-----IKHGANFLEM-AKFGFASALAATRRKEK--YMPDLEAIKK 320

Query: 72  LKEQVYV 78
             +   V
Sbjct: 321 EYDHFTV 327

>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A Length = 309

 Score = 35.6 bits (83), Expect = 6e-04
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 10  DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESAT 69
           D  G+GDA  A  L               ++ +LR A   G     + G   G P     
Sbjct: 245 DPVGAGDAFAAGYLAGA------VWGLP-VEERLRLANLLGASVAASRGDHEGAPYREDL 297

Query: 70  QNL 72
           + L
Sbjct: 298 EVL 300

>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1 Length = 306

 Score = 35.2 bits (82), Expect = 7e-04
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 11/66 (16%)

Query: 13  GSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNL 72
           G+GD+VVA  L  L       E + +    + FAVAAG    ++     GF T    + L
Sbjct: 246 GAGDSVVAGFLAALQ------EGKSLEDA-VPFAVAAGSATAFSD----GFCTREEVERL 294

Query: 73  KEQVYV 78
           ++Q+  
Sbjct: 295 QQQLQR 300

>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A* Length = 309

 Score = 35.2 bits (82), Expect = 7e-04
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 12  TGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQN 71
            G+GD++V A+  KL       EN  + +  +RF VAAG  A    G      +   TQ 
Sbjct: 252 VGAGDSMVGAMTLKLA------ENASLEEM-VRFGVAAGSAATLNQGT--RLCSHDDTQK 302

Query: 72  LKEQV 76
           +   +
Sbjct: 303 IYAYL 307

>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A* Length = 311

 Score = 35.2 bits (82), Expect = 7e-04
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 10  DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESAT 69
           D TG+GDA+    L         ++  + +++ L +A+ A  +     G     PT    
Sbjct: 250 DVTGAGDALGGTFLSLY------YKGFE-MEKALDYAIVASTLNVMIRGDQENLPTTKDI 302

Query: 70  QNLKEQ 75
           +    +
Sbjct: 303 ETFLRE 308

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
4gm6_A	351	PFKB family carbohydrate kinase; enzyme function i	99.74
3h49_A	325	Ribokinase; transferase,PFKB family,sugar kinase Y	99.69
3go6_A	310	Ribokinase RBSK; phosphofructokinase, carbohydrate	99.69
3kzh_A	328	Probable sugar kinase; NYSGXRC, PSI-II, protein st	99.69
3iq0_A	330	Putative ribokinase II; transferase,kinase,SAD,rib	99.69
3ie7_A	320	LIN2199 protein; phosphofructokinases, transferase	99.68
2v78_A	313	Fructokinase; transferase, PFKB family carbohydrat	99.68
2dcn_A	311	Hypothetical fructokinase; 2-keto-3-deoxygluconate	99.68
3pl2_A	319	Sugar kinase, ribokinase family; PFKB PFAM motif,	99.68
3b1n_A	326	Ribokinase, putative; rossmann fold, ATP binding,	99.68
3ktn_A	346	Carbohydrate kinase, PFKB family; PFKB family,ribo	99.67
2c4e_A	302	Sugar kinase MJ0406; transferase, nucleoside kinas	99.67
3ikh_A	299	Carbohydrate kinase; transferase,kinase,SAD,ribose	99.66
3uq6_A	372	Adenosine kinase, putative; ribokinase, transferas	99.66
2jg1_A	330	Tagatose-6-phosphate kinase; phosphoryl transfer,	99.66
2rbc_A	343	Sugar kinase, AGR_C_4560P; ribokinase family, ATP-	99.66
3ljs_A	338	Fructokinase; fructokianse, PSI2, NYSGXRC, structu	99.65
3umo_A	309	6-phosphofructokinase isozyme 2; glycolysis, trans	99.65
2pkf_A	334	Adenosine kinase; transferase, S genomics, TB stru	99.65
2qcv_A	332	Putative 5-dehydro-2-deoxygluconokinase; structura	99.65
1v1a_A	309	2-keto-3-deoxygluconate kinase; ATP, structural ge	99.64
2f02_A	323	Tagatose-6-phosphate kinase; LACC, structural geno	99.64
1vm7_A	311	Ribokinase; TM0960, structural genomics, JCSG, pro	99.64
2jg5_A	306	Fructose 1-phosphate kinase; 1-phosphofructokinase	99.63
3bf5_A	306	Ribokinase related protein; 10640157, putative rib	99.63
1rkd_A	309	Ribokinase; carbohydrate kinase, ribose, nucleotid	99.62
2abq_A	306	Fructose 1-phosphate kinase; dimer, structural gen	99.62
3cqd_A	309	6-phosphofructokinase isozyme 2; phosphofructokina	99.61
1tyy_A	339	Putative sugar kinase; ribokinase fold, alpha/beta	99.61
3ry7_A	304	Ribokinase; transferase; 2.15A {Staphylococcus aur	99.61
2nwh_A	317	AGR_C_3442P, carbohydrate kinase; structural genom	99.61
4du5_A	336	PFKB; structural genomics, PSI-biology, NEW YORK s	99.61
3hj6_A	327	Fructokinase, FRK; fructose, transferase, carbohyd	99.6
2afb_A	351	2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-	99.59
3kd6_A	313	Carbohydrate kinase, PFKB family; nucleoside kinas	99.59
3ewm_A	313	Uncharacterized sugar kinase PH1459; carbohydrate	99.59
2ajr_A	331	Sugar kinase, PFKB family; TM0828, possible 1-phos	99.58
4e3a_A	352	Sugar kinase protein; structural genomics, protein	99.57
4e84_A	352	D-beta-D-heptose 7-phosphate kinase; LPS-heptose b	99.55
3vas_A	370	Putative adenosine kinase; ribokinase, enzyme, tra	99.54
1vk4_A	298	PFKB carbohydrate kinase TM0415; structural genomi	99.51
3otx_A	347	Adenosine kinase, putative; AP5A, transferase-tran	99.49
2fv7_A	331	Ribokinase; structural genomics, structural genomi	99.49
3loo_A	365	Anopheles gambiae adenosine kinase; AP4A, P4-DI(ad	99.49
2qhp_A	296	Fructokinase; NP_810670.1, PFKB family carbohydrat	99.45
3lhx_A	319	Ketodeoxygluconokinase; structural genomics, PSI-2	99.43
1bx4_A	345	Protein (adenosine kinase); human adenosine kinase	99.42
4e69_A	328	2-dehydro-3-deoxygluconokinase; putative sugar kin	99.41
2hlz_A	312	Ketohexokinase; non-protein kinase, creatine kinas	99.39
2abs_A	383	Adenosine kinase, AK; ribokinase fold, alpha/beta,	99.38
2ddm_A	283	Pyridoxine kinase; pyridoxal kinase, ribokinase, p	99.1
2yxt_A	312	Pyridoxal kinase; beta sheet with alpha helix, met	99.08
1ub0_A	258	THID, phosphomethylpyrimidine kinase; thiamin bios	99.05
1jxh_A	288	Phosphomethylpyrimidine kinase; THID, ribokinase f	99.05
2i5b_A	271	Phosphomethylpyrimidine kinase; ADP complex, PDXK,	98.95
3pzs_A	289	PM kinase, pyridoxamine kinase; structural genomic	98.82
3h74_A	282	Pyridoxal kinase; PSI-II, structural genomics, pro	98.8
3mbh_A	291	Putative phosphomethylpyrimidine kinase; structura	98.71
1ekq_A	272	Hydroxyethylthiazole kinase; alpha-beta, transfera	98.04
3zs7_A	300	Pyridoxal kinase; transferase, sleeping sickness;	98.0
3rm5_A	550	Hydroxymethylpyrimidine/phosphomethylpyrimidine K	97.76
3bgk_A	311	SMU.573, putative uncharacterized protein; alpha/b	96.15
2r3b_A	310	YJEF-related protein; putative kinase in the ribok	96.07
1v8a_A	265	Hydroxyethylthiazole kinase; alpha-beta, ATP bindi	95.32
3rpz_A	279	ADP/ATP-dependent NAD(P)H-hydrate dehydratase; str	95.29
3rss_A	502	Putative uncharacterized protein; unknown function	95.25
1gc5_A	467	ADP-dependent glucokinase; ALFA/beta sandwichs, in	91.48
1ua4_A	455	Glucokinase, ADP-dependent glucokinase; transferas	91.21
1l2l_A	457	ADP-dependent glucokinase; ADP glucokinase APO, tr	89.67
3drw_A	474	ADP-specific phosphofructokinase; AMP, GLYC kinase	87.83
3dzv_A	273	4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_	85.5

>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601}

Probab=99.74  E-value=3.1e-18  Score=119.24  Aligned_cols=61  Identities=26%  Similarity=0.366  Sum_probs=56.7

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQ   75 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~   75 (82)
                      +|||||||||+|+|||+++++       +|++++++++||+++|+++|++.|+.+.+| .+++++++++
T Consensus       284 ~VvDttGAGDaF~ag~l~~l~-------~g~~~~~al~~A~aaaal~v~~~Ga~~~~~-~~ev~~~l~~  344 (351)
T 4gm6_A          284 PIVDRVGGGDAYTAAVLHGIL-------SEWRPDETVKFATAAAGLKHSIHGDINPFD-EKTIADFAAD  344 (351)
T ss_dssp             SCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHTTSSSSSCCCC-HHHHHHHHHC
T ss_pred             CcCCCCChhHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHhCCCCCCCCCC-HHHHHHHHhC
Confidence            589999999999999999999       999999999999999999999999988777 5789998864

>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A*

Probab=99.69  E-value=1.9e-17  Score=114.51  Aligned_cols=64  Identities=25%  Similarity=0.367  Sum_probs=57.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVY   77 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~   77 (82)
                      .+|||+||||+|+|||+++++       +|+++++++++|+++|++++++.|+..++|++++++++++++.
T Consensus       253 ~vvDttGAGDaf~ag~~~~l~-------~g~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~~  316 (325)
T 3h49_A          253 TAIDTIGAGDNFASGFIAALL-------EGKNLRECARFANATAAISVLSVGATTGVKNRKLVEQLLEEYE  316 (325)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSSSSSSCSSSHHHHTC-----
T ss_pred             CCcCCCChhHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhcc
Confidence            589999999999999999999       9999999999999999999999999989999999999887654

>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A*

Probab=99.69  E-value=5.4e-17  Score=112.14  Aligned_cols=64  Identities=23%  Similarity=0.248  Sum_probs=60.0

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccc----hhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFEN----QDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVY   77 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~----~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~   77 (82)
                      .+|||+||||+|+|||+++++       +    |+++++++++|+++|++++++.|+...+|+++++++++++..
T Consensus       239 ~vvdttGAGDaF~ag~~~~l~-------~~~~~g~~l~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~~  306 (310)
T 3go6_A          239 TPVDTAGAGDVFAGVLAANWP-------RNPGSPAERLRALRRACAAGALATLVSGVGDCAPAAAAIDAALRANR  306 (310)
T ss_dssp             CCSCCTTHHHHHHHHHHHHCC-------SSSCCHHHHHHHHHHHHHHHHHHTTSSCSTTCCCCHHHHHHHHHTC-
T ss_pred             CcCcCCCchHHHHHHHHHHHH-------hcccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcc
Confidence            489999999999999999999       8    999999999999999999999999889999999999987653

>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens}

Probab=99.69  E-value=5.9e-17  Score=112.15  Aligned_cols=64  Identities=17%  Similarity=0.106  Sum_probs=61.0

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVY   77 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~   77 (82)
                      .+|||+||||+|+|||+++++       +|+++++++++|+++|++++++.|+..+.|+++++++++++..
T Consensus       248 ~vvdttGAGDaf~ag~~~~l~-------~g~~~~~a~~~A~a~aa~~v~~~G~~~~~~~~~~v~~~~~~~~  311 (328)
T 3kzh_A          248 DVKNVTGAGDSFVAGLGYGYM-------NKMPIEDIVKFAMTMSNITISHEETIHPDMALDTVLAKLEKTT  311 (328)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSSSSCTTCSHHHHHHHHHTCC
T ss_pred             ccCCCCChhHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCCCCCCCcCCHHHHHHHhhhcc
Confidence            489999999999999999999       9999999999999999999999999999999999999998764

>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A

Probab=99.69  E-value=7.1e-17  Score=111.81  Aligned_cols=64  Identities=22%  Similarity=0.191  Sum_probs=60.0

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVY   77 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~   77 (82)
                      .++|||||||+|+|||+++++       +|+++++++++|+++|++++++.|+..++|+++++++++++..
T Consensus       251 ~vvdttGAGDaf~a~~~~~l~-------~g~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~~~~~~  314 (330)
T 3iq0_A          251 EEVDPTGAGDCFGGAWIACRQ-------LGFDAHRALQYANACGALAVTRRGPMEGTSRLMEIETFIQRHD  314 (330)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHTTSCSSSTTCCCHHHHHHHHHHC-
T ss_pred             ccCCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcCcCCCCCCCCHHHHHHHHHhcc
Confidence            589999999999999999999       9999999999999999999999999889999999999987643

>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A

Probab=99.68  E-value=4.7e-17  Score=112.05  Aligned_cols=66  Identities=21%  Similarity=0.218  Sum_probs=61.6

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPSM   81 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~   81 (82)
                      .++||+||||+|.|||+++++       +|+++++++++|+++|++++++.|+  ..|++++++++++++.+.++
T Consensus       244 ~vvdttGAGDaF~ag~~~~l~-------~g~~~~~a~~~A~a~aa~~v~~~G~--~~~~~~ev~~~~~~~~i~~~  309 (320)
T 3ie7_A          244 QERNDTGAGDVFVGAFIAGLA-------MNMPITETLKVATGCSASKVMQQDS--SSFDLEAAGKLKNQVSIIQL  309 (320)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSSS--SCCCHHHHHHHGGGCEEEEC
T ss_pred             CCCCCcCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhCcCC--CCCCHHHHHHHhhCeEEEEc
Confidence            489999999999999999999       9999999999999999999999995  78999999999999887653

>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A*

Probab=99.68  E-value=1e-16  Score=110.02  Aligned_cols=63  Identities=19%  Similarity=0.213  Sum_probs=59.7

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV   76 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~   76 (82)
                      +++|||||||+|.|||+++++       +|+++++++++|+++|+.++++.|+...+|++++++++++++
T Consensus       249 ~vvDttGAGDaF~ag~~~~l~-------~g~~~~~a~~~a~~~aa~~v~~~G~~~~~~~~~~v~~~~~~~  311 (313)
T 2v78_A          249 PVEDPTGAGDAMAGTFVSLYL-------QGKDIEYSLAHGIAASTLVITVRGDNELTPTLEDAERFLNEF  311 (313)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSSSSTTCCCHHHHHHHHHHC
T ss_pred             CccCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Confidence            489999999999999999999       999999999999999999999999988889999999998875

>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*

Probab=99.68  E-value=8.9e-17  Score=110.12  Aligned_cols=63  Identities=21%  Similarity=0.302  Sum_probs=59.6

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV   76 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~   76 (82)
                      +++|||||||+|+|||+++++       +|+++++++++|+++|+.++++.|+...+|++++++++++++
T Consensus       247 ~vvdttGAGDaf~a~~~~~l~-------~g~~~~~a~~~a~~~aa~~v~~~G~~~~~~~~~~v~~~~~~~  309 (311)
T 2dcn_A          247 PVEDVTGAGDALGGTFLSLYY-------KGFEMEKALDYAIVASTLNVMIRGDQENLPTTKDIETFLREM  309 (311)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHT-------TTCCHHHHHHHHHHHHHHHTTSSSSSTTCCCHHHHHHHHHHC
T ss_pred             cccCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhc
Confidence            489999999999999999999       999999999999999999999999988889999999998765

>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0

Probab=99.68  E-value=5.3e-17  Score=111.57  Aligned_cols=62  Identities=26%  Similarity=0.324  Sum_probs=58.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQ   75 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~   75 (82)
                      .++||+||||+|+|||+++++       +|+++++++++|+++|++++++.|+...+|+++++++++++
T Consensus       256 ~vvdttGAGDaf~a~~~~~l~-------~g~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~  317 (319)
T 3pl2_A          256 DVINGLGAGDAFGGALCHGLL-------SEWPLEKVLRFANTAGALVASRLECSTAMPTTDEVEASLNQ  317 (319)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSCSGGGCCCHHHHHHHCC-
T ss_pred             CCCCCcCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhccCCcCCCCCHHHHHHHHhc
Confidence            489999999999999999999       99999999999999999999999998889999999998754

>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A*

Probab=99.68  E-value=1.4e-16  Score=110.54  Aligned_cols=65  Identities=22%  Similarity=0.169  Sum_probs=60.9

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCC
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVP   79 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~   79 (82)
                      ++|||||||+|+|||+++++       +|+++++++++|+++|+.++++.|+....|+++++++++++.+.+
T Consensus       245 vvDttGAGDaF~ag~l~~l~-------~g~~~~~a~~~A~~~aa~~v~~~G~~~~~~~~~ev~~~l~~~~~~  309 (326)
T 3b1n_A          245 VIDPTGCGDAFRGGLLYGIE-------HGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEIDARFETAFGY  309 (326)
T ss_dssp             CCCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSSTTCCCCCHHHHHHHHHHHHSS
T ss_pred             CCCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhcCC
Confidence            67999999999999999999       999999999999999999999999988889999999999876554

>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis}

Probab=99.67  E-value=1.2e-16  Score=111.00  Aligned_cols=65  Identities=26%  Similarity=0.415  Sum_probs=60.3

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVP   79 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~   79 (82)
                      .++||+||||+|+|||+++|+       +|+++++++++|+++|++++++.|+.. +|+++++++++++...+
T Consensus       271 ~vvdttGAGDaF~ag~~~~l~-------~g~~l~~a~~~A~a~aa~~v~~~G~~~-~p~~~ev~~~l~~~~~~  335 (346)
T 3ktn_A          271 LNLDRIGAGDAYAAGILYGYS-------QNWSLEKAVTFATVNGVLAHTIQGDIP-LTTVKQVNHVLEHPNID  335 (346)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHTTSSSSCC-CCCHHHHHHHHHCTTCC
T ss_pred             ccCCCCchhHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhccCCCCC-CCCHHHHHHHHhcCCce
Confidence            479999999999999999999       999999999999999999999999976 89999999999866544

>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A

Probab=99.67  E-value=1.4e-16  Score=108.98  Aligned_cols=63  Identities=21%  Similarity=0.162  Sum_probs=59.2

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhc
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVY   77 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~   77 (82)
                      ++||+||||+|.|||+++++       +|+++++++++|+++|+.++++.|+...+|+++++++++++..
T Consensus       239 ~vdt~GAGDaf~a~~~~~l~-------~g~~~~~a~~~a~~~aa~~~~~~G~~~~~p~~~ev~~~~~~~~  301 (302)
T 2c4e_A          239 VIDPTGAGDSYRAGFLSAYV-------KGYDLEKCGLIGAATASFVVEAKGCQTNLPTWDKVVERLEKHR  301 (302)
T ss_dssp             CSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHTTSSSSSTTCCCHHHHHHHHHHC-
T ss_pred             CCcCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHccccccccCCCHHHHHHHHHhcC
Confidence            79999999999999999999       9999999999999999999999999888999999999987653

>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*

Probab=99.66  E-value=9.4e-17  Score=110.06  Aligned_cols=64  Identities=23%  Similarity=0.224  Sum_probs=58.7

Q ss_pred             CccCccchHHHHHH-HHHHHHhcCCccccchhhHHH-HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVA-AILRKLTTCPEMFENQDVLQR-QLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVY   77 (82)
Q Consensus         7 ~vvDttGAGDaf~a-gfl~~l~~~~~~~~~~~~~~~-al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~   77 (82)
                      +++||+||||+|+| ||+++++       +|+++++ ++++|+++|++++++.|+.+.+|+++++++++++..
T Consensus       225 ~vvDttGAGDaf~a~~~~~~l~-------~g~~~~~~a~~~a~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~~  290 (299)
T 3ikh_A          225 EALDTTGAGDTFLAVMLASALL-------RGVAPDALALAHASRAAAITVSRRGTLSAFPGSRELAALLTTDG  290 (299)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHHH-------TTSSSCHHHHHHHHHHHHHHHHSSSSTTTSCCHHHHHHHHC---
T ss_pred             ccCCCCCchHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhCCCcccccCCCHHHHHHHHHhcc
Confidence            58999999999999 9999999       9999999 999999999999999999888999999999986543

>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A*

Probab=99.66  E-value=3.7e-17  Score=115.31  Aligned_cols=58  Identities=19%  Similarity=0.176  Sum_probs=50.9

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLK   73 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~   73 (82)
                      +|||||||||+|+|||+++|+       +|+++++|+++|+++|+.++++.|+  .+|.+++++-.+
T Consensus       313 ~vVDTtGAGDaF~agfl~~l~-------~g~~l~~a~~~a~~aAa~vv~~~Ga--~lp~r~~~~lkl  370 (372)
T 3uq6_A          313 QIIDTNGAGDAFAAGFIADYI-------RGKPMITSLHAAVKAAAYIICRSGF--SLGSRDSYSLKI  370 (372)
T ss_dssp             GCCCCTTHHHHHHHHHHHHHT-------TTCCHHHHHHHHHHHHHHHHTSSSS--CCCCGGGCC---
T ss_pred             ceeCCCchHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcCCCC--CCCChhHHHHHh
Confidence            589999999999999999999       9999999999999999999999997  567777665443

>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*

Probab=99.66  E-value=8.9e-17  Score=111.57  Aligned_cols=65  Identities=23%  Similarity=0.282  Sum_probs=60.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPS   80 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~   80 (82)
                      +++|||||||+|+|||+++++       +|+++++++++|+++|++++++.|+  ..|++++++++++++.+.+
T Consensus       265 ~vvDttGAGDaF~ag~~~~l~-------~g~~l~~al~~A~a~aa~~v~~~G~--~~~~~~ev~~~~~~i~~~~  329 (330)
T 2jg1_A          265 SVLNPVGSGDSTVAGITSAIL-------NHENDHDLLKKANTLGMLNAQEAQT--GYVNLNNYDDLFNQIEVLE  329 (330)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSSS--SCCCGGGHHHHHTTCEEEE
T ss_pred             cccCCCcHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCcCC--CCCCHHHHHHHHhceEEEe
Confidence            489999999999999999999       9999999999999999999999998  4689999999999887653

>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}

Probab=99.66  E-value=2.2e-16  Score=110.50  Aligned_cols=67  Identities=16%  Similarity=0.162  Sum_probs=62.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPS   80 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~   80 (82)
                      .++||+||||+|.|||+++++       +|+++++++++|+++|+.++++.|+...+|+++++++++++..+.+
T Consensus       267 ~vvDttGAGDaF~ag~~~~l~-------~g~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~~~~~  333 (343)
T 2rbc_A          267 EAVDTLAAGDIFHGTFALAMA-------EGMQSRAAVRLSSVAAALKCTVFGGRIGAPTREETEEAMRQWLERE  333 (343)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSSGGGGCCCHHHHHHHHHHHHTCC
T ss_pred             ccccCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhCCCCCccCCCCHHHHHHHHHhccccC
Confidence            489999999999999999999       9999999999999999999999999877899999999998776554

>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A*

Probab=99.65  E-value=7.6e-17  Score=111.82  Aligned_cols=63  Identities=30%  Similarity=0.417  Sum_probs=48.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccch--------------hhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQ--------------DVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNL   72 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~--------------~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~   72 (82)
                      .+|||+||||+|+|||+++++       ++              .++++++++|+++|++++++.|+.+++|++++++++
T Consensus       253 ~vvDttGAGDaF~a~~~~~l~-------~g~~~~~~~~~~~~~~~~l~~al~~A~~~aa~~v~~~Ga~~~~p~~~ev~~~  325 (338)
T 3ljs_A          253 QVQDSNAAGDAFVGGMLYTFA-------QQFDDAAALIDFCHDPESIVSTLRFAAAVGALAVTRQGAFTAMPMLSEVLSL  325 (338)
T ss_dssp             --------CHHHHHHHHHHHH-------HHCSSTHHHHHHHTCHHHHHHHHHHHHHHHGGGC----CCCCTTHHHHHHHH
T ss_pred             ccCCCCCccHHHHHHHHHHHH-------hCCCcccchhccccChHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Confidence            479999999999999999999       77              899999999999999999999999899999999999


Q ss_pred             HHhh
Q 040065           73 KEQV   76 (82)
Q Consensus        73 ~~~~   76 (82)
                      +++.
T Consensus       326 ~~~~  329 (338)
T 3ljs_A          326 IQEQ  329 (338)
T ss_dssp             HHHH
T ss_pred             Hhhh
Confidence            8754

>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*

Probab=99.65  E-value=3.2e-16  Score=107.24  Aligned_cols=62  Identities=29%  Similarity=0.404  Sum_probs=58.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVY   77 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~   77 (82)
                      .++||+||||+|.|||+++++       +|+++++++++|+++|++++++.|+  ..|++++++++++++.
T Consensus       247 ~vvdttGAGD~f~a~~~~~l~-------~g~~~~~a~~~A~~~aa~~v~~~G~--~~~~~~ev~~~l~~~~  308 (309)
T 3umo_A          247 KSQSTVGAGDSMVGAMTLKLA-------ENASLEEMVRFGVAAGSAATLNQGT--RLCSHDDTQKIYAYLS  308 (309)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHTTSSTT--CCCCHHHHHHHHHHHT
T ss_pred             CCCCCcChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHhc
Confidence            589999999999999999999       9999999999999999999999998  4799999999998763

>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A*

Probab=99.65  E-value=3.8e-16  Score=108.58  Aligned_cols=63  Identities=21%  Similarity=0.169  Sum_probs=59.5

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhc
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVY   77 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~   77 (82)
                      ++||+||||+|.|||+++++       +|+++++++++|+++|+.++++.|+....|+++++++++++.+
T Consensus       259 vvDttGAGDaF~a~~~~~l~-------~g~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~~  321 (334)
T 2pkf_A          259 QTDPTGVGDAFRAGFLTGRS-------AGLGLERSAQLGSLVAVLVLESTGTQEWQWDYEAAASRLAGAY  321 (334)
T ss_dssp             CCCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSSSSCCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhCCCCCcCCCCHHHHHHHHHHHH
Confidence            68999999999999999999       9999999999999999999999999888999999999987654

>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}

Probab=99.65  E-value=3.7e-16  Score=107.88  Aligned_cols=63  Identities=19%  Similarity=0.259  Sum_probs=54.8

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV   76 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~   76 (82)
                      .++||+||||+|.|||+++++       +|+++++++++|+++|+.++++.|+...+|+++++++++++.
T Consensus       264 ~vvdt~GAGDaf~a~~~~~l~-------~g~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~  326 (332)
T 2qcv_A          264 KVLKTFGAGDSYASAFLYALI-------SGKGIETALKYGSASASIVVSKHSSSDAMPSVEEIEALIEKD  326 (332)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHT
T ss_pred             cccCCCCcHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHccCCCccCCCCHHHHHHHHhcC
Confidence            489999999999999999999       999999999999999999999999988899999999988754

>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A

Probab=99.64  E-value=1.9e-16  Score=108.58  Aligned_cols=62  Identities=24%  Similarity=0.240  Sum_probs=56.7

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQ   75 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~   75 (82)
                      .++||+||||+|.|||+++++       +|+++++++++|+++|+.++++.|+...+|+++++++++++
T Consensus       242 ~vvdttGAGDaf~a~~~~~l~-------~g~~~~~a~~~a~~~aa~~v~~~G~~~~~~~~~~v~~~~~~  303 (309)
T 1v1a_A          242 EAVDPVGAGDAFAAGYLAGAV-------WGLPVEERLRLANLLGASVAASRGDHEGAPYREDLEVLLKA  303 (309)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSTTTTTCCCHHHHTTCC--
T ss_pred             CcCCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcCCCCCcCCCCHHHHHHHHhh
Confidence            479999999999999999999       99999999999999999999999998888999999877643

>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*

Probab=99.64  E-value=2.8e-16  Score=108.51  Aligned_cols=65  Identities=20%  Similarity=0.233  Sum_probs=60.4

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPS   80 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~   80 (82)
                      .++||+||||+|.|||+++++       +|+++++++++|+++|+.++++.|+  ..|++++++++++++.+.+
T Consensus       248 ~vvdttGAGDaF~a~~~~~l~-------~g~~~~~a~~~A~~~aa~~v~~~G~--~~~~~~ev~~~~~~~~v~~  312 (323)
T 2f02_A          248 QAKNPVGSGDATIAGLAYGLA-------KDAPAAELLKWGMAAGMANAQERMT--GHVDVENVKKHLMNIQVVE  312 (323)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHSSSS--SCCCHHHHHHHHTTCEEEE
T ss_pred             cccCCccHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcCCCc--CCCCHHHHHHHhhcEEEEE
Confidence            489999999999999999999       9999999999999999999999998  4799999999998887654

>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1

Probab=99.64  E-value=4.2e-16  Score=107.44  Aligned_cols=63  Identities=21%  Similarity=0.295  Sum_probs=59.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV   76 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~   76 (82)
                      .++||+||||+|.|||+++++       +|+++++++++|+++++.++++.|+...+|++++++++++++
T Consensus       249 ~~vdttGAGDaf~a~~~~~l~-------~g~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~  311 (311)
T 1vm7_A          249 KAVDTTAAGDVFNGAFAVALS-------EGKNPEEAVIFGTAAAAISVTRLGAQSSIPAREEVEAFLKNL  311 (311)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHTTSSSSGGGCCCHHHHHHHHHTC
T ss_pred             ccCCCCccHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHhCcCCccccCCCHHHHHHHHhcC
Confidence            489999999999999999999       999999999999999999999999987899999999988753

>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}

Probab=99.63  E-value=3e-16  Score=107.10  Aligned_cols=63  Identities=24%  Similarity=0.389  Sum_probs=58.8

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPS   80 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~   80 (82)
                      .++||+||||+|.|||+++++       +|+++++++++|+++|+.++++.|    +|++++++++++++.+.+
T Consensus       240 ~vvdttGAGDaf~a~~~~~l~-------~g~~~~~a~~~A~a~aa~~v~~~G----~~~~~ev~~~~~~~~~~~  302 (306)
T 2jg5_A          240 KVVNTVGSGDSTVAGMVAGIA-------SGLSIEKAFQQAVACGTATAFDED----LATRDAIEKIKSQVTISV  302 (306)
T ss_dssp             CCCCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSS----SCCHHHHHHHHTTCEEEE
T ss_pred             cccCCcChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcCCC----CCCHHHHHHHHhceEEEE
Confidence            489999999999999999999       999999999999999999999999    689999999998887654

>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}

Probab=99.63  E-value=3.7e-16  Score=107.75  Aligned_cols=64  Identities=11%  Similarity=0.126  Sum_probs=59.0

Q ss_pred             cCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh--cCCCCCCCCHHHHHHHHHhhcCC
Q 040065            9 CDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT--IGAVRGFPTESATQNLKEQVYVP   79 (82)
Q Consensus         9 vDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~--~G~~~~~~~~~~i~~~~~~~~~~   79 (82)
                      +||+||||+|+|||+++++       +|+++++++++|+++|+.++++  .|+...+|+++++++++++.+-+
T Consensus       239 vDttGAGDaF~ag~~~~l~-------~g~~~~~a~~~A~~~aa~~v~~~~~G~~~~~p~~~ev~~~~~~~~~~  304 (306)
T 3bf5_A          239 GDTVGAGDSFRAGLYLALY-------NRRSIEKGMIYGTIIAHHVIDDGIENFSLNMEDLERETENYRRMFTK  304 (306)
T ss_dssp             SCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHHCSTTCCCCHHHHHHHHHHHHHHC--
T ss_pred             CCCCCccHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhccCCccccccCCCHHHHHHHHHhhccc
Confidence            8999999999999999999       9999999999999999999999  99887789999999999887543

>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*

Probab=99.62  E-value=8.5e-16  Score=105.15  Aligned_cols=62  Identities=26%  Similarity=0.343  Sum_probs=58.5

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQ   75 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~   75 (82)
                      .++||+||||+|.|||+++++       +|.++++++++|+++++.++++.|+...+|+++++++++++
T Consensus       246 ~~vdt~GAGD~f~a~~~~~l~-------~g~~~~~a~~~a~~~aa~~~~~~G~~~~~p~~~ev~~~~~~  307 (309)
T 1rkd_A          246 QAVDTIAAGDTFNGALITALL-------EEKPLPEAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDR  307 (309)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSSSGGGCCCHHHHHHHHHT
T ss_pred             CcCCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHcCCCCccCCCCCHHHHHHHHhc
Confidence            489999999999999999999       99999999999999999999999998789999999998764

>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1

Probab=99.62  E-value=1.4e-15  Score=104.13  Aligned_cols=62  Identities=32%  Similarity=0.464  Sum_probs=57.6

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVP   79 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~   79 (82)
                      .++||+||||+|+|||+++++       +|+++++++++|+++|+.++++.    .+|++++++++++++.+.
T Consensus       240 ~vvdttGAGDaF~a~~~~~l~-------~g~~~~~a~~~A~a~aa~~v~~~----~~p~~~ev~~~~~~~~~~  301 (306)
T 2abq_A          240 EVRNSVGAGDSVVAGFLAALQ-------EGKSLEDAVPFAVAAGSATAFSD----GFCTREEVERLQQQLQRT  301 (306)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHSS----SCCCHHHHHHHHHHHTTC
T ss_pred             cccCCccHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCc----CCCCHHHHHHHHhhEEEE
Confidence            489999999999999999999       99999999999999999999998    568999999999887763

>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*

Probab=99.61  E-value=1.1e-15  Score=104.57  Aligned_cols=62  Identities=29%  Similarity=0.404  Sum_probs=53.6

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVY   77 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~   77 (82)
                      .++||+||||+|.|||+++++       +|+++++++++|+++|+.++++.|+  ..|++++++++++++.
T Consensus       247 ~~vdttGAGDaf~a~~~~~l~-------~g~~~~~a~~~A~~~aa~~~~~~G~--~~~~~~~v~~~~~~~~  308 (309)
T 3cqd_A          247 KSQSTVGAGDSMVGAMTLKLA-------ENASLEEMVRFGVAAGSAATLNQGT--RLCSHDDTQKIYAYLS  308 (309)
T ss_dssp             CCCCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHTC-------CCCHHHHHHHHHHHT
T ss_pred             ccCCCcCcHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcCcCC--CCCCHHHHHHHHHHhh
Confidence            489999999999999999999       9999999999999999999999997  4699999999998763

>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A*

Probab=99.61  E-value=1.1e-15  Score=106.53  Aligned_cols=64  Identities=27%  Similarity=0.337  Sum_probs=57.6

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccch-----hhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQ-----DVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVY   77 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~-----~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~   77 (82)
                      .++||+||||+|+|||+++++       +|     .++++++++|+++|+.++++.|+...+|+++++++++++..
T Consensus       263 ~vvDttGAGDaF~ag~~~~l~-------~g~~~~~~~l~~a~~~A~a~aa~~v~~~G~~~~~p~~~ev~~~l~~~~  331 (339)
T 1tyy_A          263 DVVDTTGAGDAFVGGLLFTLS-------RANCWDHALLAEAISNANACGAMAVTAKGAMTALPFPDQLNTFLSSHS  331 (339)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHT-------TSSSCCHHHHHHHHHHHHHHHHHGGGSSSTTTTCCCHHHHHHHHC---
T ss_pred             CcCCCCCchHHHHHHHHHHHH-------hccccccccHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHhcCc
Confidence            489999999999999999999       75     89999999999999999999999888999999999886543

>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}

Probab=99.61  E-value=3e-16  Score=107.07  Aligned_cols=58  Identities=22%  Similarity=0.338  Sum_probs=55.4

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccch-hhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQ-DVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQN   71 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~-~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~   71 (82)
                      .++||+||||+|.|||+++++       +| +++++++++|+++|++++++.|+.+++|+++++++
T Consensus       245 ~~vdttGAGDaf~a~~~~~l~-------~g~~~~~~a~~~A~~~aa~~~~~~G~~~~~p~~~ev~~  303 (304)
T 3ry7_A          245 NAIDTTAAGDTFIGAFVSRLN-------KSQDNLADAIDFGNKASSLTVQKHGAQASIPLLEEVNQ  303 (304)
T ss_dssp             CSSCCSSHHHHHHHHHHHHCC-------TTCTTHHHHHHHHHHHHHTTSCCCCTGGGCCCHHHHHT
T ss_pred             ccCCCCCchHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHHHhCCCCccccCCCHHHHhh
Confidence            489999999999999999999       99 99999999999999999999999888999999875

>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str}

Probab=99.61  E-value=9.8e-16  Score=105.57  Aligned_cols=63  Identities=22%  Similarity=0.222  Sum_probs=58.6

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV   76 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~   76 (82)
                      .++||+||||+|.|||+++++       +|+++++++++|+++++.++++.|+....|++++++++...+
T Consensus       246 ~~vdt~GAGDaf~a~~~~~l~-------~g~~~~~a~~~A~~~aa~~v~~~G~~~~~~~~~~v~~~~~~~  308 (317)
T 2nwh_A          246 EVKDVTGAGDAMASGYLAAIA-------EGKTIREALRQGAAAAAITVQSSFATSQDLSKDSVEAMLGLV  308 (317)
T ss_dssp             SCSCCCCSSHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHSSTTCCGGGCCHHHHHHHHTTS
T ss_pred             cccCCCChhHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHhHhhhh
Confidence            489999999999999999999       999999999999999999999999988889999999876554

>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}

Probab=99.61  E-value=4.8e-16  Score=108.10  Aligned_cols=58  Identities=19%  Similarity=0.313  Sum_probs=45.2

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNL   72 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~   72 (82)
                      ++||+||||+|.|||+++++       +|+++++++++|+++|++++++.|+..++|++++++++
T Consensus       277 vvdttGAGDaf~a~~~~~l~-------~g~~l~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~  334 (336)
T 4du5_A          277 VVDTVGAGDGFAVGVISALL-------DGLGVPEAVKRGAWIGARAVQVLGDSEGLPTRAELNAA  334 (336)
T ss_dssp             -----CHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHC------CCCCHHHHHCC
T ss_pred             CCCCccchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhccCCCccCCCCHHHHHhc
Confidence            79999999999999999999       99999999999999999999999998889999999764

>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii}

Probab=99.60  E-value=4.1e-17  Score=112.92  Aligned_cols=61  Identities=18%  Similarity=0.277  Sum_probs=35.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKE   74 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~   74 (82)
                      .++|||||||+|+|||+++++       +|+++++++++|+++|++++++.|+...+|++++++++++
T Consensus       266 ~vvdttGAGDaf~ag~~~~l~-------~g~~~~~a~~~A~a~aa~~v~~~G~~~~~p~~~ev~~~l~  326 (327)
T 3hj6_A          266 DAVDVTGAGDAFWSGFICGLL-------DGYTVKRSIKLGNGVAAFKIRGVGALSPVPSKEDIIKEYN  326 (327)
T ss_dssp             C-----CCHHHHHHHHHHTTS-------SCSTTHHHHHHHHCCCSSCC--------------------
T ss_pred             ccCCCcChhHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhc
Confidence            589999999999999999999       9999999999999999999999999889999999998875

>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1

Probab=99.59  E-value=1.8e-15  Score=105.36  Aligned_cols=61  Identities=21%  Similarity=0.226  Sum_probs=57.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQ   75 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~   75 (82)
                      .++||+||||+|+|||+++++       +|+++++++++|+++|+.++++.|+.. .|+++++++++++
T Consensus       283 ~vvdttGAGDaF~ag~~~~l~-------~g~~l~~a~~~A~~~aa~~v~~~G~~~-~~~~~ev~~~l~~  343 (351)
T 2afb_A          283 HIVDRVGAGDSFAGALIYGSL-------MGFDSQKKAEFAAAASCLKHTIPGDFV-VLSIEEIEKLASG  343 (351)
T ss_dssp             ECSCCTTHHHHHHHHHHHHHH-------HTCCHHHHHHHHHHHHHHHTTSSSSSC-CCCHHHHHHHHTC
T ss_pred             ccCCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHhc
Confidence            379999999999999999999       999999999999999999999999875 8999999998865

>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum}

Probab=99.59  E-value=2.6e-15  Score=103.42  Aligned_cols=63  Identities=14%  Similarity=0.166  Sum_probs=56.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchh-----hHHHHHHHHHHHHHHHHhhcCCCCC-CCCHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQD-----VLQRQLRFAVAAGIIAQWTIGAVRG-FPTESATQNLKEQV   76 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~-----~~~~al~~a~a~aa~~~~~~G~~~~-~~~~~~i~~~~~~~   76 (82)
                      .++||+||||+|+|||++++.       ++.     ++++++++|+++|++++++.|+... .|+++++++++++.
T Consensus       230 ~vvdttGAGDaf~a~~~~~l~-------~g~~~~~~~l~~a~~~a~~~aa~~v~~~G~~~~~~~~~~ev~~~l~~~  298 (313)
T 3kd6_A          230 SIYDPTGAGDTFAGGFIGHLA-------RCGNTSEAEMRKAVLYGSAMASFCVEQFGPYRYNDLDLLEVDDRYQSF  298 (313)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------HHCCCCHHHHHHHHHHHHHHHHHHTTSSTTGGGGTCCHHHHHHHHHHH
T ss_pred             CcCCCCCccHHHHHHHHHHHH-------cCCCccccCHHHHHHHHHHHHHHHHeecCCCCCCCCCHHHHHHHHHHH
Confidence            479999999999999999999       776     8999999999999999999998753 58999998877543

>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A*

Probab=99.59  E-value=1.5e-15  Score=104.43  Aligned_cols=64  Identities=27%  Similarity=0.258  Sum_probs=56.9

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV   76 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~   76 (82)
                      .++||+||||+|+|||+++++..     +|+++++++++|+++|++++++.|+.. +|+++++++++++.
T Consensus       238 ~vvDttGAGDaf~a~~~~~l~~~-----~g~~l~~a~~~A~~~aa~~v~~~G~~~-~p~~~ev~~~l~~~  301 (313)
T 3ewm_A          238 NPLDTTGAGDAFMAALLVGILKL-----KGLDLLKLGKFANLVAALSTQKRGAWS-TPRKDELLKYKEAR  301 (313)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHHHS-----SSCCHHHHHHHHHHHHHHHTTSCSSCC-CCCHHHHTTSHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHccCCCCC-CCCHHHHHHHHHHH
Confidence            58999999999999999999611     578999999999999999999999964 89999999888654

>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1

Probab=99.58  E-value=9.6e-16  Score=106.27  Aligned_cols=66  Identities=20%  Similarity=0.204  Sum_probs=59.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPS   80 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~   80 (82)
                      .++|||||||+|+|||+++++.      +|+++++++++|+++|++++++.|+  ..|++++++++++++.+.+
T Consensus       264 ~vvDttGAGDaF~ag~l~~l~~------~g~~~~~al~~A~a~aa~~v~~~G~--~~~~~~ev~~~~~~~~~~~  329 (331)
T 2ajr_A          264 DTSHLLGAGDAYVAGMVYYFIK------HGANFLEMAKFGFASALAATRRKEK--YMPDLEAIKKEYDHFTVER  329 (331)
T ss_dssp             CGGGCTTHHHHHHHHHHHHHHH------HCSCHHHHHHHHHHHHHHHTTSSSC--CCCCHHHHHTTGGGEEEEE
T ss_pred             cccCCCchHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHcCcCc--CCCCHHHHHHHHhhcEEEE
Confidence            4899999999999999999982      4678999999999999999999998  4799999999998887654

>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A*

Probab=99.57  E-value=3.4e-15  Score=104.70  Aligned_cols=57  Identities=23%  Similarity=0.219  Sum_probs=53.4

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQN   71 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~   71 (82)
                      +|||+||||+|+|||++++.       +|+++++++++|+++|+.++++.|+.+..|.++.+++
T Consensus       292 vvDttGAGDaF~agfl~~l~-------~g~~l~~a~~~A~~aAa~~v~~~G~~~~~~~~~~~~~  348 (352)
T 4e3a_A          292 VVDTTGAGDLFASGFLYGYT-------QGRSLEDCGKLGCLAAGIVIQQIGPRPMTSLSEAAKQ  348 (352)
T ss_dssp             CSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHTTSSSSSCSSCHHHHHHH
T ss_pred             CcCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHH
Confidence            79999999999999999999       9999999999999999999999999988887777664

>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*

Probab=99.55  E-value=6.8e-15  Score=103.38  Aligned_cols=55  Identities=22%  Similarity=0.173  Sum_probs=51.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQ   70 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~   70 (82)
                      .+||||||||+|+|||+++++       +|+++++++++|+++|++++++.|+..  ++++|++
T Consensus       297 ~vvDttGAGDaF~ag~l~~l~-------~g~~l~~al~~A~aaaa~~v~~~Ga~~--~t~~el~  351 (352)
T 4e84_A          297 EVFDVSGAGDTVIATVATMLG-------AGVPLVDAVVLANRAAGIVVGKLGTAT--VDYDELF  351 (352)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSSSCC--CCHHHHT
T ss_pred             CccCCccccHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCCCCcc--CCHHHhc
Confidence            589999999999999999999       999999999999999999999999865  6888875

>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A*

Probab=99.54  E-value=3.9e-15  Score=104.98  Aligned_cols=55  Identities=20%  Similarity=0.229  Sum_probs=50.7

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQ   70 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~   70 (82)
                      ++|||+||||+|+|||+++|+       +|+++++++++|+++|++++++.|+  .+|+.++++
T Consensus       311 ~vvDttGAGDaF~ag~l~~l~-------~g~~l~~a~~~A~aaAa~~v~~~G~--~~p~~~~~~  365 (370)
T 3vas_A          311 QIIDTNGAGDAFAAGFIADYI-------RGKPMITSLHAAVKAAAYIICRSGF--SLGSRDSYS  365 (370)
T ss_dssp             TCSCCTTHHHHHHHHHHHHHT-------TTCCHHHHHHHHHHHHHHHHTSSSS--CCCCGGGGC
T ss_pred             CcCCCCChHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHcccCC--cCCCCccce
Confidence            689999999999999999999       9999999999999999999999998  567776664

>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1

Probab=99.51  E-value=5e-15  Score=101.39  Aligned_cols=55  Identities=25%  Similarity=0.289  Sum_probs=49.3

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccc-hhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFEN-QDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESAT   69 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~-~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i   69 (82)
                      .++|||||||+|+|||+++++       + |+++++++++|+++|+.++++.|+... |+.+++
T Consensus       237 ~vvDttGAGDaF~a~~~~~l~-------~~g~~~~~a~~~A~a~aa~~v~~~G~~~~-~~~~el  292 (298)
T 1vk4_A          237 SLEGRTGRGDTCTAAFLVGFV-------FKKMSIEKATKFAAAVTSVKMRHPGPLRR-EDLEAI  292 (298)
T ss_dssp             SGGGGTTHHHHHHHHHHHHHH-------TSCCCHHHHHHHHHHHHHHHTTSSSSCCG-GGGGGC
T ss_pred             ccCCCcCccHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHccCCCCCC-CCHHHH
Confidence            479999999999999999999       8 999999999999999999999998654 555544

>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*

Probab=99.49  E-value=2e-14  Score=99.95  Aligned_cols=50  Identities=22%  Similarity=0.224  Sum_probs=44.0

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPT   65 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~   65 (82)
                      ++||||||||+|+|||+++++       +|+++++++++|+++|+.++++.|+  .+|+
T Consensus       292 ~vvDttGAGDaF~ag~l~~l~-------~g~~l~~a~~~a~~~aa~~v~~~G~--~~p~  341 (347)
T 3otx_A          292 KVIDMNGAGDAFMGGFLSAYA-------VGKDLRRCCETGHYTAQEVIQRDGC--SFPE  341 (347)
T ss_dssp             GCCSSCCSHHHHHHHHHHHHT-------TTCCHHHHHHHHHHHHHHHHTCC------CC
T ss_pred             CCCCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcccCC--CCCC
Confidence            579999999999999999999       9999999999999999999999996  4454

>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1

Probab=99.49  E-value=8.1e-15  Score=101.61  Aligned_cols=58  Identities=21%  Similarity=0.218  Sum_probs=53.8

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccch--hhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQ--DVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQN   71 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~--~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~   71 (82)
                      .++||+||||+|.|||+++++       +|  +++++++++|+++++.++++.|+...+|+++++++
T Consensus       269 ~vvdttGAGDaf~a~~~~~l~-------~g~~~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~  328 (331)
T 2fv7_A          269 KAVDTTGAGDSFVGALAFYLA-------YYPNLSLEDMLNRSNFIAAVSVQAAGTQSSYPYKKDLPL  328 (331)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------HCTTSCHHHHHHHHHHHHHHHHTSSSGGGGCCCGGGSCG
T ss_pred             ccCCCCCchHHHHHHHHHHHH-------hCCCCCHHHHHHHHHHHHHHHhCCCCCccCCCCHHHHhh
Confidence            489999999999999999999       88  99999999999999999999999888898887753

>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae}

Probab=99.49  E-value=2.2e-14  Score=100.80  Aligned_cols=48  Identities=21%  Similarity=0.239  Sum_probs=42.3

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVR   61 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~   61 (82)
                      ++||||||||+|+|||+++++       +|+++++++++|+++|+.++++.|+..
T Consensus       308 ~vvDttGAGDaF~agfl~~l~-------~g~~l~~a~~~a~~~Aa~~v~~~G~~~  355 (365)
T 3loo_A          308 QMVDTNGAGDAFVGGFLAQLL-------QSRTVDVCIKCGIWAAREIIQRSGCTF  355 (365)
T ss_dssp             ----CTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred             CccCCCChHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHcCCCCCC
Confidence            579999999999999999999       999999999999999999999999843

>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.45  E-value=8.3e-14  Score=94.61  Aligned_cols=51  Identities=24%  Similarity=0.324  Sum_probs=47.9

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFP   64 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~   64 (82)
                      .++||+||||+|.|||+++++       +|.++++++++|+++++.++++.|+....|
T Consensus       238 ~~vdttGAGD~f~a~~~~~l~-------~g~~~~~a~~~a~~~aa~~v~~~G~~~~~~  288 (296)
T 2qhp_A          238 PVADTVGAGDSFTAAFCASIL-------NGKSVPEAHKLAVEVSAYVCTQSGAMPELP  288 (296)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------HTCCHHHHHHHHHHHHHHHHTSSSSSCCCC
T ss_pred             ccccCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcCCCCCCCCc
Confidence            479999999999999999999       999999999999999999999999877655

>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri}

Probab=99.43  E-value=1.4e-13  Score=94.65  Aligned_cols=48  Identities=17%  Similarity=0.075  Sum_probs=45.7

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVR   61 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~   61 (82)
                      .++||+||||+|+|||+++++       +|+++++++++|+++|+.++++.|+..
T Consensus       257 ~vvdttGAGDaf~a~~~~~l~-------~g~~~~~a~~~A~~~aa~~v~~~Ga~~  304 (319)
T 3lhx_A          257 KVIDTTAAGDSFSAGYLAVRL-------TGGSAENAAKRGHLTASTVIQYRGAII  304 (319)
T ss_dssp             GCCCCTTHHHHHHHHHHHHHT-------TTCCHHHHHHHHHHHHHHHTTSSSSSC
T ss_pred             ccCCCCCccHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHhhhccCCCcC
Confidence            489999999999999999999       999999999999999999999999854

>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A*

Probab=99.42  E-value=1.5e-13  Score=95.32  Aligned_cols=47  Identities=28%  Similarity=0.333  Sum_probs=45.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV   60 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~   60 (82)
                      .++||+||||+|+|||+++++       +|+++++++++|+++|+.++++.|+.
T Consensus       291 ~vvDttGAGDaf~ag~~~~l~-------~g~~~~~a~~~A~~~aa~~v~~~G~~  337 (345)
T 1bx4_A          291 EIIDTNGAGDAFVGGFLSQLV-------SDKPLTECIRAGHYAASIIIRRTGCT  337 (345)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHT-------TTCCHHHHHHHHHHHHHHHTTSSSSC
T ss_pred             ccccCCCcchHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            589999999999999999999       99999999999999999999999984

>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*

Probab=99.41  E-value=3.2e-13  Score=93.66  Aligned_cols=48  Identities=23%  Similarity=0.201  Sum_probs=45.9

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVR   61 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~   61 (82)
                      .++||+||||+|+|||+++++       +|+++++++++|+++|+.++++.|+.+
T Consensus       270 ~vvdttGAGDaf~a~~~~~l~-------~g~~l~~a~~~A~~~aa~~v~~~Ga~~  317 (328)
T 4e69_A          270 QVVDTTAAGDSFNAGLLDSVL-------AGQPLETAIAAAAALAGQVVQGKGALV  317 (328)
T ss_dssp             SCCCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSSSSC
T ss_pred             CccCCCChhHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHccCCCcC
Confidence            589999999999999999999       999999999999999999999999854

>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A

Probab=99.39  E-value=4.2e-13  Score=92.28  Aligned_cols=46  Identities=24%  Similarity=0.268  Sum_probs=44.3

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA   59 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~   59 (82)
                      .++||+||||+|+|||+++++       +|+++++++++|+++|+.++++.|+
T Consensus       263 ~vvdt~GAGDaf~a~~~~~l~-------~g~~~~~a~~~a~~~aa~~v~~~G~  308 (312)
T 2hlz_A          263 RVVDTLGAGDTFNASVIFSLS-------QGRSVQEALRFGCQVAGKKCGLQGF  308 (312)
T ss_dssp             SCCCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSSS
T ss_pred             CcccCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhhcCc
Confidence            589999999999999999999       9999999999999999999999986

>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A*

Probab=99.38  E-value=4.7e-13  Score=94.38  Aligned_cols=47  Identities=21%  Similarity=0.256  Sum_probs=45.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV   60 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~   60 (82)
                      .+|||+||||+|+|||+++|+       +|+++++++++|+++|+.++++.|+.
T Consensus       329 ~vvDttGAGDaF~ag~~~~l~-------~g~~l~~al~~A~a~aa~~v~~~Ga~  375 (383)
T 2abs_A          329 KIVDTNGAGDAFVGGFLYALS-------QGKTVKQCIMCGNACAQDVIQHVGFS  375 (383)
T ss_dssp             GCCCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSSCC
T ss_pred             CcCcCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhcCCcc
Confidence            489999999999999999999       99999999999999999999999985

>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*

Probab=99.10  E-value=6.4e-11  Score=80.28  Aligned_cols=44  Identities=18%  Similarity=0.160  Sum_probs=41.3

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcC
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIG   58 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G   58 (82)
                      .+||+||||+|.|+|++++.       +|.++.+++++|+++++.++++..
T Consensus       225 ~vdt~GAGDaf~a~~~~~l~-------~g~~~~~A~~~A~a~a~~~v~~~~  268 (283)
T 2ddm_A          225 KTDLKGTGDLFCAQLISGLL-------KGKALTDAVHRAGLRVLEVMRYTQ  268 (283)
T ss_dssp             CCCCCCHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999       999999999999999999998764

>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*

Probab=99.08  E-value=7.8e-11  Score=80.94  Aligned_cols=42  Identities=17%  Similarity=0.058  Sum_probs=38.3

Q ss_pred             cCccchHHHHHHHHHHHHhcCCccccc-hhhHHHHHHHHHHHHHHHHhhc
Q 040065            9 CDRTGSGDAVVAAILRKLTTCPEMFEN-QDVLQRQLRFAVAAGIIAQWTI   57 (82)
Q Consensus         9 vDttGAGDaf~agfl~~l~~~~~~~~~-~~~~~~al~~a~a~aa~~~~~~   57 (82)
                      +||+||||+|+|||+++++       + |.++.+++++|+++++.++++.
T Consensus       228 vdttGAGDaf~a~~~~~l~-------~~g~~l~~a~~~A~a~a~~~v~~~  270 (312)
T 2yxt_A          228 AVFVGTGDLFAAMLLAWTH-------KHPNNLKVACEKTVSTLHHVLQRT  270 (312)
T ss_dssp             SCCSSHHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHH
Confidence            3999999999999999999       8 8999999999999998887643

>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2

Probab=99.05  E-value=2.3e-10  Score=76.43  Aligned_cols=44  Identities=27%  Similarity=0.122  Sum_probs=41.0

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI   57 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~   57 (82)
                      .++||+||||+|.|+|++++.       +|+++++++++|+++++.++++.
T Consensus       201 ~~~dt~GaGD~f~a~~~~~l~-------~g~~~~~a~~~a~~~~~~~~~~~  244 (258)
T 1ub0_A          201 HTRNTHGTGCTLSAAIAALLA-------KGRPLAEAVAEAKAYLTRALKTA  244 (258)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHh
Confidence            478999999999999999999       99999999999999999998764

>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*

Probab=99.05  E-value=2.2e-10  Score=78.17  Aligned_cols=45  Identities=18%  Similarity=-0.006  Sum_probs=41.9

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIG   58 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G   58 (82)
                      .++||+||||+|.|+|++++.       +|.++.+++++|+++++.+++...
T Consensus       226 ~~vdttGAGD~f~a~~~a~l~-------~g~~~~~A~~~A~a~a~~~v~~~~  270 (288)
T 1jxh_A          226 NTKNTHGTGCTLSAALAALRP-------RHRSWGETVNEAKAWLSAALAQAD  270 (288)
T ss_dssp             CCSCCBTHHHHHHHHHHHHGG-------GSSSHHHHHHHHHHHHHHHHTTGG
T ss_pred             CCCCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHhhc
Confidence            478999999999999999999       999999999999999999998763

>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis}

Probab=98.95  E-value=1e-09  Score=73.78  Aligned_cols=44  Identities=18%  Similarity=0.015  Sum_probs=41.4

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI   57 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~   57 (82)
                      .++||+||||+|.|+|++++.       +|.++.+++++|+++++.++++.
T Consensus       207 ~~~dt~GaGD~f~a~~~~~l~-------~g~~~~~A~~~A~~~~~~~~~~~  250 (271)
T 2i5b_A          207 DTPYTHGAGCTFSAAVTAELA-------KGAEVKEAIYAAKEFITAAIKES  250 (271)
T ss_dssp             CCSCCBTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHh
Confidence            478999999999999999999       99999999999999999999875

>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*

Probab=98.82  E-value=4.9e-09  Score=71.77  Aligned_cols=41  Identities=22%  Similarity=0.239  Sum_probs=37.5

Q ss_pred             cCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065            9 CDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT   56 (82)
Q Consensus         9 vDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~   56 (82)
                      +||+|+||+|.|+|++++.       +|.++.+++++|++++..+++.
T Consensus       219 ~dt~GaGD~f~a~~~~~l~-------~g~~~~~A~~~A~~~~~~~i~~  259 (289)
T 3pzs_A          219 RQPVGVGDLTSGLLLVNLL-------KGEPLDKALEHVTAAVYEVMLK  259 (289)
T ss_dssp             SCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999       9999999999999987666654

>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*

Probab=98.80  E-value=4.1e-09  Score=72.30  Aligned_cols=44  Identities=23%  Similarity=0.095  Sum_probs=40.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI   57 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~   57 (82)
                      ..+||+|+||+|.|+|++++.       +|.++++++++|+++++.+++..
T Consensus       206 v~~dt~GaGD~fsaai~a~l~-------~g~~l~~A~~~A~~~~~~ai~~~  249 (282)
T 3h74_A          206 LPGHYNGTGDTLAAVIAGLLG-------RGYPLAPTLARANQWLNMAVAET  249 (282)
T ss_dssp             CSSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHH
Confidence            358999999999999999999       99999999999999988887754

>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*

Probab=98.71  E-value=1.3e-08  Score=70.03  Aligned_cols=44  Identities=20%  Similarity=0.206  Sum_probs=40.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI   57 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~   57 (82)
                      ..+||+|+||+|.|+|++++.       +|.++.+++++|+++...++++.
T Consensus       216 ~~~dt~GaGD~f~aai~a~l~-------~g~~l~~A~~~A~~~~~~ai~~~  259 (291)
T 3mbh_A          216 LPAHYPGTGDTFTSVITGSLM-------QGDSLPMALDRATQFILQGIRAT  259 (291)
T ss_dssp             CGGGSTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHH
Confidence            348999999999999999999       99999999999999988887664

>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A*

Probab=98.04  E-value=3.6e-06  Score=57.31  Aligned_cols=42  Identities=14%  Similarity=0.040  Sum_probs=33.1

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHH----HHHHHHh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVA----AGIIAQW   55 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a----~aa~~~~   55 (82)
                      .+.|++|+||+|.|.+.+.+.       +|.++.+++++|++    ++..+..
T Consensus       189 ~~~~ttGaGD~lag~iaa~la-------~g~~~~~A~~~A~~~~~~A~~~a~~  234 (272)
T 1ekq_A          189 LLTKVTGAGCLLTSVVGAFCA-------VEENPLFAAIAAISSYGVAAQLAAQ  234 (272)
T ss_dssp             GGGGSTTHHHHHHHHHHHHHT-------TCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCccCchHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            456999999999777776667       78899999999985    5555554

>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}

Probab=98.00  E-value=5.8e-06  Score=57.01  Aligned_cols=41  Identities=17%  Similarity=0.101  Sum_probs=33.8

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT   56 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~   56 (82)
                      -+|++|+||+|.|+|++++.        |.++.+++++|.+....++..
T Consensus       221 ~~~~~GtGD~fsaal~a~l~--------g~~~~~Av~~A~~~v~~~i~~  261 (300)
T 3zs7_A          221 EGRYTGTGDVFAACLLAFSH--------SHPMDVAIGKSMAVLQELIIA  261 (300)
T ss_dssp             SSCBTTHHHHHHHHHHHHHT--------TSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999973        567889999999986666544

>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}

Probab=97.76  E-value=3.6e-05  Score=57.09  Aligned_cols=36  Identities=19%  Similarity=0.199  Sum_probs=32.9

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHH
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAG   50 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~a   50 (82)
                      ++||+|+||+|.|+|++.+.       +|.++.+++++|++.-
T Consensus       234 ~~~t~GtGD~fsaaiaa~La-------~G~~l~eAv~~A~~~v  269 (550)
T 3rm5_A          234 TTHTHGTGCTLASAIASNLA-------RGYSLPQSVYGGIEYV  269 (550)
T ss_dssp             CSCCBTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHH
T ss_pred             CCCCcChhHHHHHHHHHHHH-------cCCCHHHHHHHHHHHH
Confidence            47999999999999999999       9999999999999643

>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans}

Probab=96.15  E-value=0.0076  Score=41.82  Aligned_cols=41  Identities=15%  Similarity=0.029  Sum_probs=31.0

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccc-hhhHHHHHHHHHHHHHHHHh
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFEN-QDVLQRQLRFAVAAGIIAQW   55 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~-~~~~~~al~~a~a~aa~~~~   55 (82)
                      ..+|.|+||++ +|++++++-      + +.++.+++++|+.+...+.+
T Consensus       243 ~~~t~GtGD~L-ag~iaa~lA------~~g~~~~eA~~~A~~~~~~ag~  284 (311)
T 3bgk_A          243 YQATGGMGDTL-AGMIAGFVA------QFHTDRFEVAAAAVFLHSYIAD  284 (311)
T ss_dssp             GGCSTTHHHHH-HHHHHHHHH------HCCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHH-HHHHHHHHH------ccCCCHHHHHHHHHHHHHHHHH
Confidence            56899999997 777777641      6 78899999999866665443

>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A

Probab=96.07  E-value=0.021  Score=39.60  Aligned_cols=41  Identities=17%  Similarity=0.112  Sum_probs=30.2

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHh
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQW   55 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~   55 (82)
                      ..+|.|+||++ +|++++++-      +|.++.+++++|+.+...+..
T Consensus       227 ~~~t~GtGD~L-ag~Iaa~lA------~g~~~~eA~~~A~~~~~~ag~  267 (310)
T 2r3b_A          227 GMATGGTGDTL-AGIIAGFLA------QFKPTIETIAGAVYLHSLIGD  267 (310)
T ss_dssp             GGCSTTHHHHH-HHHHHHHHH------HSCSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCChHHHH-HHHHHHHHH------cCCCHHHHHHHHHHHHHHHHH
Confidence            46899999996 666666641      678888999988866665443

>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A

Probab=95.32  E-value=0.028  Score=37.91  Aligned_cols=33  Identities=18%  Similarity=0.058  Sum_probs=26.8

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHH
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVA   48 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a   48 (82)
                      ..+++|+||+|.|.+...+.       +|.+ .++...|..
T Consensus       187 ~~~~~GtGD~Lsg~iaa~lA-------~g~~-~~Aa~~a~~  219 (265)
T 1v8a_A          187 LGRVTGTGCMVAALTGAFVA-------VTEP-LKATTSALV  219 (265)
T ss_dssp             GGGSTTHHHHHHHHHHHHHT-------TSCH-HHHHHHHHH
T ss_pred             cCCccChhHHHHHHHHHHHh-------cCCC-HHHHHHHHH
Confidence            45999999999999988888       7777 777766653

>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A

Probab=95.29  E-value=0.052  Score=37.17  Aligned_cols=44  Identities=16%  Similarity=0.157  Sum_probs=30.4

Q ss_pred             ccCccchHHHHHHHHHHH-HhcCCccccchhhHHHHHHHHHH----HHHHHHhhcCC
Q 040065            8 TCDRTGSGDAVVAAILRK-LTTCPEMFENQDVLQRQLRFAVA----AGIIAQWTIGA   59 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~-l~~~~~~~~~~~~~~~al~~a~a----~aa~~~~~~G~   59 (82)
                      ..+|.|+||++ +|++.+ +.       ++.++.++++.|+.    ++-...++.|.
T Consensus       211 ~~at~GtGD~L-ag~iaa~lA-------~g~~~~~A~~~a~~lh~~Ag~~a~~~~g~  259 (279)
T 3rpz_A          211 ALAKGGTGDTL-TGMILGMLC-------CHEDPKHAVLNAVYLHGACAELWTDEHSA  259 (279)
T ss_dssp             GGCSTTHHHHH-HHHHHHHHH-------HCSSHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCCCCChHHHH-HHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            45789999976 555555 45       77788899888863    45555555553

>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*

Probab=95.25  E-value=0.066  Score=39.46  Aligned_cols=41  Identities=17%  Similarity=0.052  Sum_probs=31.7

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHh
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQW   55 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~   55 (82)
                      ..+|+|+||+|.|.+...+.       ++.++.+++++|+..-..+-.
T Consensus       435 ~~at~GsGD~Lag~iaa~lA-------~g~~~~~Aa~~A~~~hg~Ag~  475 (502)
T 3rss_A          435 GLSKGGSGDVLTGMIAGFIA-------QGLSPLEASTVSVYLHGFAAE  475 (502)
T ss_dssp             GGSSTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCchHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHH
Confidence            46889999987766666667       788999999999866666543

>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} SCOP: c.72.1.3

Probab=91.48  E-value=0.16  Score=37.37  Aligned_cols=21  Identities=19%  Similarity=0.347  Sum_probs=18.3

Q ss_pred             CccCccchHHHH-HHHHHHHHh
Q 040065            7 FTCDRTGSGDAV-VAAILRKLT   27 (82)
Q Consensus         7 ~vvDttGAGDaf-~agfl~~l~   27 (82)
                      ..+-|+|.||+| .+||++.+.
T Consensus       442 ~P~~TVGLGDtISa~gfv~~l~  463 (467)
T 1gc5_A          442 SPKSTVGIGDTISSSAFVSEFG  463 (467)
T ss_dssp             SCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CCCceecCCcchhhHHHHHHHH
Confidence            567899999999 779999886

>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3

Probab=91.21  E-value=0.17  Score=37.01  Aligned_cols=21  Identities=19%  Similarity=0.384  Sum_probs=18.3

Q ss_pred             CccCccchHHHH-HHHHHHHHh
Q 040065            7 FTCDRTGSGDAV-VAAILRKLT   27 (82)
Q Consensus         7 ~vvDttGAGDaf-~agfl~~l~   27 (82)
                      +.+-|+|.||+| .+||++.+.
T Consensus       431 ~P~~TVGlGDtiSa~gf~~~l~  452 (455)
T 1ua4_A          431 KPKSTVGIGDTISSSAFIGEFS  452 (455)
T ss_dssp             SCSCCTTHHHHHHHHHHHHHHH
T ss_pred             CCCceecCCcchhhHHHHHHHH
Confidence            567899999999 779999886

>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} SCOP: c.72.1.3

Probab=89.67  E-value=0.16  Score=37.21  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=13.4

Q ss_pred             CccCccchHHHH-HHHHHHHHh
Q 040065            7 FTCDRTGSGDAV-VAAILRKLT   27 (82)
Q Consensus         7 ~vvDttGAGDaf-~agfl~~l~   27 (82)
                      +.+-|+|.||+| .+||++.+.
T Consensus       434 ~P~~TVGLGDtISa~gfv~~l~  455 (457)
T 1l2l_A          434 KPKSTVGIGDTISSSAFVSEFS  455 (457)
T ss_dssp             ------CTTHHHHHHHHHHHHH
T ss_pred             CCCceecCCcchhhHHHHHHHh
Confidence            467899999999 779999875

>3drw_A ADP-specific phosphofructokinase; AMP, GLYC kinase, magnesium, metal-binding, transferase, structural G PSI-2, protein structure initiative; HET: AMP; 1.90A {Pyrococcus horikoshii} PDB: 1u2x_A

Probab=87.83  E-value=0.46  Score=35.03  Aligned_cols=21  Identities=29%  Similarity=0.332  Sum_probs=17.8

Q ss_pred             CccCccchHHHHHHH-HHHHHh
Q 040065            7 FTCDRTGSGDAVVAA-ILRKLT   27 (82)
Q Consensus         7 ~vvDttGAGDaf~ag-fl~~l~   27 (82)
                      +.+.|+|-||+|.|| |++.+.
T Consensus       446 ~P~~TVGLGDtiSagaF~~~l~  467 (474)
T 3drw_A          446 NPVLTVGLGDTISAGAFLTYLE  467 (474)
T ss_dssp             SCSCCTTHHHHHHHHHHHHHHH
T ss_pred             CCCccccCCchhhHHHHHHHHH
Confidence            457899999999999 888775

>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}

Probab=85.50  E-value=1.5  Score=29.85  Aligned_cols=33  Identities=27%  Similarity=0.147  Sum_probs=26.5

Q ss_pred             cCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHH
Q 040065            9 CDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVA   48 (82)
Q Consensus         9 vDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a   48 (82)
                      -.++|.||++.|.+.+.+.       ++.++.++...|..
T Consensus       196 ~~v~GtGc~Ls~~Iaa~lA-------~g~~~~~Aa~~A~~  228 (273)
T 3dzv_A          196 DCFTGTGDLVGALVAALLG-------EGNAPMTAAVAAVS  228 (273)
T ss_dssp             GSSTTHHHHHHHHHHHHHH-------HTCCHHHHHHHHHH
T ss_pred             CCcCCchHHHHHHHHHHHh-------CCCCHHHHHHHHHH
Confidence            3568999999999888888       77788888777663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	82
d2dcna1	308	c.72.1.1 (A:2-309) Hypothetical fructokinase ST247	2e-06
d1tyya_	304	c.72.1.1 (A:) Aminoimidazole riboside kinase {Salm	1e-05
d1rkda_	306	c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId:	8e-05
d1v19a_	302	c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Ther	1e-04
d1vm7a_	299	c.72.1.1 (A:) Ribokinase {Thermotoga maritima [Tax	1e-04
d2ajra1	319	c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {T	1e-04
d2fv7a1	308	c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapien	2e-04
d2abqa1	306	c.72.1.1 (A:1-306) Fructose 1-phosphate kinase Fru	2e-04
d2afba1	333	c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase	3e-04
d2f02a1	313	c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase Lac	5e-04

>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]} Length = 308

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Hypothetical fructokinase ST2478
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 41.0 bits (94), Expect = 2e-06
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 7/67 (10%)

Query: 10  DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESAT 69
           D TG+GDA+    L               +++ L +A+ A  +     G     PT    
Sbjct: 249 DVTGAGDALGGTFLSLYY-------KGFEMEKALDYAIVASTLNVMIRGDQENLPTTKDI 301

Query: 70  QNLKEQV 76
           +    ++
Sbjct: 302 ETFLREM 308

>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]} Length = 304

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Aminoimidazole riboside kinase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.0 bits (89), Expect = 1e-05
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 6   PFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPT 65
               D TG+GDA V  +L  L+       +  +L   +  A A G +A    GA+   P 
Sbjct: 238 VDVVDTTGAGDAFVGGLLFTLSRA--NCWDHALLAEAISNANACGAMAVTAKGAMTALPF 295

Query: 66  ESATQNL 72
                  
Sbjct: 296 PDQLNTF 302

>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]} Length = 306

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (83), Expect = 8e-05
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 7/66 (10%)

Query: 10  DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESAT 69
           D   +GD    A++  L         +  L   +RFA AA  IA    GA    P     
Sbjct: 246 DTIAAGDTFNGALITALL-------EEKPLPEAIRFAHAAAAIAVTRKGAQPSVPWREEI 298

Query: 70  QNLKEQ 75
               ++
Sbjct: 299 DAFLDR 304

>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: 2-keto-3-deoxygluconate kinase
species: Thermus thermophilus [TaxId: 274]

 Score = 36.7 bits (83), Expect = 1e-04
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 10  DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESAT 69
           D  G+GDA  A  L               ++ +LR A   G     + G   G P     
Sbjct: 245 DPVGAGDAFAAGYLAGAV-------WGLPVEERLRLANLLGASVAASRGDHEGAPYREDL 297

Query: 70  QNL 72
           + L
Sbjct: 298 EVL 300

>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]} Length = 299

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.2 bits (82), Expect = 1e-04
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 7/69 (10%)

Query: 8   TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTES 67
             D T +GD    A    L+            +  + F  AA  I+   +GA    P   
Sbjct: 238 AVDTTAAGDVFNGAFAVALS-------EGKNPEEAVIFGTAAAAISVTRLGAQSSIPARE 290

Query: 68  ATQNLKEQV 76
             +   + +
Sbjct: 291 EVEAFLKNL 299

>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]} Length = 319

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Putative sugar kinase TM0828
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.1 bits (82), Expect = 1e-04
 Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 8/69 (11%)

Query: 8   TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTES 67
           T    G+GDA VA ++          ++        +F  A+ + A          P   
Sbjct: 253 TSHLLGAGDAYVAGMVYYF------IKHGANFLEMAKFGFASALAATRRKEK--YMPDLE 304

Query: 68  ATQNLKEQV 76
           A +   +  
Sbjct: 305 AIKKEYDHF 313

>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 2e-04
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 7   FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPT 65
              D TG+GD+ V A+   L   P +      L+  L  +     ++    G    +P 
Sbjct: 246 KAVDTTGAGDSFVGALAFYLAYYPNL-----SLEDMLNRSNFIAAVSVQAAGTQSSYPY 299

>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]} Length = 306

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Fructose 1-phosphate kinase FruB
species: Bacillus halodurans [TaxId: 86665]

 Score = 35.4 bits (80), Expect = 2e-04
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 11/69 (15%)

Query: 8   TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTES 67
             +  G+GD+VVA  L  L       E +  L+  + FAVAAG           GF T  
Sbjct: 241 VRNSVGAGDSVVAGFLAALQ------EGKS-LEDAVPFAVAAGSATA----FSDGFCTRE 289

Query: 68  ATQNLKEQV 76
             + L++Q+
Sbjct: 290 EVERLQQQL 298

>d2afba1 c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase {Thermotoga maritima, TM0067 [TaxId: 2336]} Length = 333

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: 2-keto-3-deoxygluconate kinase
species: Thermotoga maritima, TM0067 [TaxId: 2336]

 Score = 35.4 bits (80), Expect = 3e-04
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 7/57 (12%)

Query: 10  DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTE 66
           DR G+GD+   A++             D  Q++  FA AA  +     G       E
Sbjct: 277 DRVGAGDSFAGALIYGSL------MGFD-SQKKAEFAAAASCLKHTIPGDFVVLSIE 326

>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Tagatose-6-phosphate kinase LacC
species: Enterococcus faecalis [TaxId: 1351]

 Score = 34.7 bits (78), Expect = 5e-04
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 9/74 (12%)

Query: 5   TPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFP 64
           T    +  GSGDA +A +   L       ++       L++ +AAG+          G  
Sbjct: 244 TIQAKNPVGSGDATIAGLAYGLA------KDAP-AAELLKWGMAAGMANAQERMT--GHV 294

Query: 65  TESATQNLKEQVYV 78
                +     + V
Sbjct: 295 DVENVKKHLMNIQV 308

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d1rkda_	306	Ribokinase {Escherichia coli [TaxId: 562]}	99.81
d1v19a_	302	2-keto-3-deoxygluconate kinase {Thermus thermophil	99.78
d2dcna1	308	Hypothetical fructokinase ST2478 {Sulfolobus tokod	99.78
d1vm7a_	299	Ribokinase {Thermotoga maritima [TaxId: 2336]}	99.77
d2f02a1	313	Tagatose-6-phosphate kinase LacC {Enterococcus fae	99.73
d1tyya_	304	Aminoimidazole riboside kinase {Salmonella typhimu	99.72
d2abqa1	306	Fructose 1-phosphate kinase FruB {Bacillus halodur	99.72
d2afba1	333	2-keto-3-deoxygluconate kinase {Thermotoga maritim	99.71
d2ajra1	319	Putative sugar kinase TM0828 {Thermotoga maritima	99.7
d2fv7a1	308	Ribokinase {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1bx4a_	342	Adenosine kinase {Human (Homo sapiens) [TaxId: 960	99.61
d2absa1	350	Adenosine kinase {Toxoplasma gondii [TaxId: 5811]}	99.6
d1vk4a_	288	Hypothetical protein TM0415 {Thermotoga maritima [	99.55
d1vi9a_	288	Pyridoxamine kinase {Escherichia coli [TaxId: 562]	98.26
d1lhpa_	309	Pyridoxal kinase {Sheep (Ovis aries) [TaxId: 9940]	97.09
d1ub0a_	258	4-amino-5-hydroxymethyl-2-methylpyrimidine phospha	97.05
d1jxha_	266	4-amino-5-hydroxymethyl-2-methylpyrimidine phospha	96.36
d1kyha_	275	Hypothetical protein YxkO {Bacillus subtilis [TaxI	94.55
d1u2xa_	450	ADP-specific phosphofructokinase {Pyrococcus horik	88.9
d1ua4a_	454	ADP-dependent glucokinase {Archaeon Pyrococcus fur	87.62
d1gc5a_	467	ADP-dependent glucokinase {Archaeon Thermococcus l	86.35
d2ax3a1	278	Hypothetical protein TM0922, C-terminal domain {Th	83.38
d1l2la_	451	ADP-dependent glucokinase {Archaeon Thermococcus l	81.76

>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=3.6e-20  Score=121.97  Aligned_cols=63  Identities=25%  Similarity=0.330  Sum_probs=60.5

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV   76 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~   76 (82)
                      ++|||+||||+|+|||+++++       ++.++++++++|+++|+++|++.|+.+++|+++|+++++++.
T Consensus       243 ~vvDt~GAGDaf~Ag~l~~l~-------~g~~~~~a~~~a~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~  305 (306)
T d1rkda_         243 QAVDTIAAGDTFNGALITALL-------EEKPLPEAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDRQ  305 (306)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSSSGGGCCCHHHHHHHHHTC
T ss_pred             ccccCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhc
Confidence            689999999999999999999       999999999999999999999999998999999999999874

>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: 2-keto-3-deoxygluconate kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=1.3e-19  Score=120.64  Aligned_cols=61  Identities=25%  Similarity=0.245  Sum_probs=57.9

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKE   74 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~   74 (82)
                      ++||||||||+|+|||+++++       +++++++++++|+++|++++++.|+.+++|++++++++++
T Consensus       242 ~vvDttGAGDaf~a~~~~~~~-------~g~~~~~a~~~a~~~Aa~~v~~~G~~~~~p~~~~i~~~l~  302 (302)
T d1v19a_         242 EAVDPVGAGDAFAAGYLAGAV-------WGLPVEERLRLANLLGASVAASRGDHEGAPYREDLEVLLK  302 (302)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSSSSTTCCCHHHHHHCC-
T ss_pred             ccCCCCChhHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHhC
Confidence            589999999999999999999       9999999999999999999999999999999999998764

>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Hypothetical fructokinase ST2478
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.78  E-value=3.6e-19  Score=118.29  Aligned_cols=63  Identities=21%  Similarity=0.302  Sum_probs=60.7

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV   76 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~   76 (82)
                      +++||+||||+|.|||+++++       +|+++++++++|+++|++++++.|+.+.+|++++++++++++
T Consensus       246 ~vvDt~GAGDaf~ag~i~~l~-------~g~~~~~a~~~a~~~aa~~~~~~G~~~~~p~~~~~~~~l~~~  308 (308)
T d2dcna1         246 PVEDVTGAGDALGGTFLSLYY-------KGFEMEKALDYAIVASTLNVMIRGDQENLPTTKDIETFLREM  308 (308)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHT-------TTCCHHHHHHHHHHHHHHHTTSSSSSTTCCCHHHHHHHHHHC
T ss_pred             eecCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhCcCCCCcCCCCHHHHHHHHhhC
Confidence            589999999999999999999       999999999999999999999999999999999999999985

>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=3.1e-19  Score=118.95  Aligned_cols=63  Identities=21%  Similarity=0.295  Sum_probs=60.4

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV   76 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~   76 (82)
                      .++||+||||+|+|||+++++       +++++++++++|+++|+++|++.|+.+.+|++++++++++++
T Consensus       237 ~vvDttGAGDaf~Ag~i~~l~-------~g~~~~~al~~a~~~aa~~~~~~G~~~~~p~~~ei~~~lk~~  299 (299)
T d1vm7a_         237 KAVDTTAAGDVFNGAFAVALS-------EGKNPEEAVIFGTAAAAISVTRLGAQSSIPAREEVEAFLKNL  299 (299)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHTTSSSSGGGCCCHHHHHHHHHTC
T ss_pred             eeECCCCccHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhCcCCCCCCCCCHHHHHHHHhcC
Confidence            589999999999999999999       999999999999999999999999998999999999999864

>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Tagatose-6-phosphate kinase LacC
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.73  E-value=2.2e-18  Score=116.26  Aligned_cols=66  Identities=20%  Similarity=0.242  Sum_probs=61.5

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPSM   81 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~   81 (82)
                      +++|||||||+|+|||+++++       +|+++++|+++|+++|++++++.|+  ..|+.++++++++++.+.+.
T Consensus       246 ~vvDttGAGD~f~ag~i~~l~-------~g~~~~~al~~A~a~aa~~~~~~g~--~~~~~e~~~~~~~~~~~~~~  311 (313)
T d2f02a1         246 QAKNPVGSGDATIAGLAYGLA-------KDAPAAELLKWGMAAGMANAQERMT--GHVDVENVKKHLMNIQVVEI  311 (313)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHSSSS--SCCCHHHHHHHHTTCEEEEC
T ss_pred             CCCCCcCHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhCCCCC--CCCCHHHHHHHHhcCceEEc
Confidence            599999999999999999999       9999999999999999999999996  67999999999999887653

>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Aminoimidazole riboside kinase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.72  E-value=3.7e-18  Score=112.74  Aligned_cols=66  Identities=26%  Similarity=0.362  Sum_probs=57.2

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKE   74 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~   74 (82)
                      +++||+||||+|+|||++++.+... + ++.++++++++|+++|++++++.|+++.+|+++||+++++
T Consensus       239 ~vvdt~GAGDaf~ag~~~~l~~g~~-~-~~~~l~~al~~a~~~As~~v~~~G~~~~~P~~~ev~~~l~  304 (304)
T d1tyya_         239 DVVDTTGAGDAFVGGLLFTLSRANC-W-DHALLAEAISNANACGAMAVTAKGAMTALPFPDQLNTFLS  304 (304)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHTTSSS-C-CHHHHHHHHHHHHHHHHHGGGSSSTTTTCCCHHHHHHHHC
T ss_pred             cCCCCCCchHHHHHHHHHHHHhCCC-c-cchHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHhhC
Confidence            4899999999999999999983211 1 3445899999999999999999999999999999999873

>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Fructose 1-phosphate kinase FruB
species: Bacillus halodurans [TaxId: 86665]

Probab=99.72  E-value=9.4e-18  Score=112.50  Aligned_cols=61  Identities=33%  Similarity=0.471  Sum_probs=56.9

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYV   78 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~   78 (82)
                      ++|||+||||+|+|||+++++       +|+++++++++|+++|++++++.|    .|+++++++++++++.
T Consensus       240 ~vvDttGAGDaF~ag~l~~l~-------~g~~~~~al~~a~a~aa~~~~~~G----~~~~~~v~~~~~~~~~  300 (306)
T d2abqa1         240 EVRNSVGAGDSVVAGFLAALQ-------EGKSLEDAVPFAVAAGSATAFSDG----FCTREEVERLQQQLQR  300 (306)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHSSS----CCCHHHHHHHHHHHTT
T ss_pred             ccCCCCcHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHHh
Confidence            599999999999999999999       999999999999999999999987    3789999999998764

>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Putative sugar kinase TM0828
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=4.7e-18  Score=116.18  Aligned_cols=67  Identities=19%  Similarity=0.209  Sum_probs=61.0

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPSM   81 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~   81 (82)
                      .++|||||||+|+|||++++++      +|.++.+++++|+++|++++++.|.  .+|++++++++++++.++++
T Consensus       252 ~vvDt~GAGDaf~ag~i~~~l~------~g~~~~~a~~~a~a~aa~~~~~~g~--~~~~~~~~~~~~~~~~i~~i  318 (319)
T d2ajra1         252 DTSHLLGAGDAYVAGMVYYFIK------HGANFLEMAKFGFASALAATRRKEK--YMPDLEAIKKEYDHFTVERV  318 (319)
T ss_dssp             CGGGCTTHHHHHHHHHHHHHHH------HCSCHHHHHHHHHHHHHHHTTSSSC--CCCCHHHHHTTGGGEEEEEC
T ss_pred             CCCCCCChHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHhCCCCC--CCCCHHHHHHHHhcCcEEEc
Confidence            5899999999999999999772      4799999999999999999999996  67999999999999988764

>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.2e-18  Score=113.20  Aligned_cols=62  Identities=19%  Similarity=0.188  Sum_probs=55.3

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLK   73 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~   73 (82)
                      .+|||+||||+|+|||++++...     +++++++++++|+++|++++++.|+++++|+++||++++
T Consensus       246 ~vvDttGAGDaF~ag~~~~l~~~-----~~~~~~~a~~~a~~~aa~~v~~~G~~~~~p~~~ei~~~l  307 (308)
T d2fv7a1         246 KAVDTTGAGDSFVGALAFYLAYY-----PNLSLEDMLNRSNFIAAVSVQAAGTQSSYPYKKDLPLTL  307 (308)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHHHC-----TTSCHHHHHHHHHHHHHHHHTSSSGGGGCCCGGGSCGGG
T ss_pred             cccCCCChhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHhh
Confidence            58999999999999999977321     788999999999999999999999998999999987643

>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Adenosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.3e-16  Score=106.48  Aligned_cols=46  Identities=28%  Similarity=0.340  Sum_probs=44.7

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA   59 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~   59 (82)
                      ++||||||||+|+|||+++++       +|+++++++++|+++|++++++.|+
T Consensus       288 ~vvDttGAGDaF~agfl~~l~-------~g~~~~~a~~~a~~~Aa~~v~~~Ga  333 (342)
T d1bx4a_         288 EIIDTNGAGDAFVGGFLSQLV-------SDKPLTECIRAGHYAASIIIRRTGC  333 (342)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHT-------TTCCHHHHHHHHHHHHHHHTTSSSS
T ss_pred             CccCCCcHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcCcCC
Confidence            489999999999999999999       9999999999999999999999997

>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Adenosine kinase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.60  E-value=4.5e-16  Score=105.16  Aligned_cols=48  Identities=21%  Similarity=0.235  Sum_probs=45.5

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCC
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVR   61 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~   61 (82)
                      +|||||||||+|+|||+++++       +|+++++++++|+++|+.++++.|+..
T Consensus       300 ~VVDttGAGDaF~ag~l~~ll-------~g~~~~~al~~a~~~Aa~~v~~~Ga~l  347 (350)
T d2absa1         300 KIVDTNGAGDAFVGGFLYALS-------QGKTVKQCIMCGNACAQDVIQHVGFSL  347 (350)
T ss_dssp             GCCCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHTSSSCCC
T ss_pred             CccCCCcHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHhcccCCCC
Confidence            489999999999999999999       999999999999999999999999743

>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Hypothetical protein TM0415
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=1e-15  Score=100.86  Aligned_cols=55  Identities=22%  Similarity=0.261  Sum_probs=47.8

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQN   71 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~   71 (82)
                      ++||||||||+|+|||+++++.      ++.+++++++||+++|+.++++.|.    ++++++++
T Consensus       232 ~vvDttGAGDsF~ag~i~~~l~------~g~~~~~a~~~A~~~Aa~~v~~~Gp----~~~~~~~~  286 (288)
T d1vk4a_         232 SLEGRTGRGDTCTAAFLVGFVF------KKMSIEKATKFAAAVTSVKMRHPGP----LRREDLEA  286 (288)
T ss_dssp             SGGGGTTHHHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHTTSSSS----CCGGGGGG
T ss_pred             ccCCCCCHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHhCcCCC----CCHHHHHh
Confidence            6999999999999999999652      6789999999999999999999984    45666654

>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: PfkB-like kinase
domain: Pyridoxamine kinase
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=8.1e-07  Score=59.38  Aligned_cols=41  Identities=27%  Similarity=0.205  Sum_probs=35.4

Q ss_pred             CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHH
Q 040065            7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQ   54 (82)
Q Consensus         7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~   54 (82)
                      ...|++|+||+|.|+|++.+.       +|+++++++++|.+.-..++
T Consensus       215 ~~~~~~GtGD~fsa~l~a~l~-------~G~~l~~A~~~A~~~v~~~l  255 (288)
T d1vi9a_         215 GMRQPVGVGDVTSGLLLVKLL-------QGATLQEALEHVTAAVYEIM  255 (288)
T ss_dssp             TTCCCSCHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCChhHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHH
Confidence            357889999999999999999       99999999999987644443

>d1lhpa_ c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: PfkB-like kinase
domain: Pyridoxal kinase
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=97.09  E-value=0.00032  Score=46.93  Aligned_cols=35  Identities=23%  Similarity=0.197  Sum_probs=29.6

Q ss_pred             cCccchHHHHHHHHHHHHhcCCccccch-hhHHHHHHHHHHHH
Q 040065            9 CDRTGSGDAVVAAILRKLTTCPEMFENQ-DVLQRQLRFAVAAG   50 (82)
Q Consensus         9 vDttGAGDaf~agfl~~l~~~~~~~~~~-~~~~~al~~a~a~a   50 (82)
                      .++.|+||+|.|+|++.++       ++ .+++++++.|.+.=
T Consensus       225 ~~~~GtGD~fsa~l~a~l~-------~g~~~L~~A~~~A~~~v  260 (309)
T d1lhpa_         225 AVFVGTGDLFAAMLLAWTH-------KHPNNLKVACEKTVSAM  260 (309)
T ss_dssp             SCCSSHHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHH
T ss_pred             CCCCcccHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHH
Confidence            4668999999999999998       66 58999999888663

>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Thiamin biosynthesis kinases
domain: 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD)
species: Thermus thermophilus [TaxId: 274]

Probab=97.05  E-value=0.00054  Score=44.43  Aligned_cols=42  Identities=29%  Similarity=0.135  Sum_probs=36.1

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT   56 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~   56 (82)
                      ..++.|.||+|.++|++.|+       +|.+++++++.|...-..++..
T Consensus       202 ~~~~~GtGd~~asaia~~La-------~G~~l~~Av~~A~~~v~~~i~~  243 (258)
T d1ub0a_         202 TRNTHGTGCTLSAAIAALLA-------KGRPLAEAVAEAKAYLTRALKT  243 (258)
T ss_dssp             CSCCTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHh
Confidence            35678999999999999999       9999999999999876655543

>d1jxha_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Thiamin biosynthesis kinases
domain: 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD)
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.36  E-value=0.0028  Score=41.22  Aligned_cols=41  Identities=17%  Similarity=0.004  Sum_probs=36.0

Q ss_pred             cCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065            9 CDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT   56 (82)
Q Consensus         9 vDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~   56 (82)
                      .++-|.||+|.+++++.|.       +|++++++++.|...-..++..
T Consensus       206 ~~~hGTGc~lasaiaa~La-------~G~~l~~Av~~A~~~v~~~i~~  246 (266)
T d1jxha_         206 KNTHGTGCTLSAALAALRP-------RHRSWGETVNEAKAWLSAALAQ  246 (266)
T ss_dssp             SCCBTHHHHHHHHHHHHGG-------GSSSHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHh
Confidence            4567999999999999999       9999999999998877776654

>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: YjeF C-terminal domain-like
domain: Hypothetical protein YxkO
species: Bacillus subtilis [TaxId: 1423]

Probab=94.55  E-value=0.053  Score=35.34  Aligned_cols=44  Identities=20%  Similarity=0.191  Sum_probs=32.1

Q ss_pred             ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHH----HHHHHHHhhcC
Q 040065            8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAV----AAGIIAQWTIG   58 (82)
Q Consensus         8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~----a~aa~~~~~~G   58 (82)
                      ...|.|.||.+.|-+..-+.       ++.+..++...|+    .+|-....+.|
T Consensus       207 ~lat~GsGDvLaGiIa~~lA-------q~~~~~~Aa~~a~~lh~~aa~~~~~~~~  254 (275)
T d1kyha_         207 ALAKGGTGDTLTGMILGMLC-------CHEDPKHAVLNAVYLHGACAELWTDEHS  254 (275)
T ss_dssp             GGCSTTHHHHHHHHHHHHHH-------HCSSHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             cccCCccccHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            35678999999887777777       7888999999885    34444444544

>d1u2xa_ c.72.1.3 (A:) ADP-specific phosphofructokinase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: ADP-specific Phosphofructokinase/Glucokinase
domain: ADP-specific phosphofructokinase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.90  E-value=0.16  Score=35.43  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=19.0

Q ss_pred             CCCCccCccchHHHH-HHHHHHHHh
Q 040065            4 ITPFTCDRTGSGDAV-VAAILRKLT   27 (82)
Q Consensus         4 ~~~~vvDttGAGDaf-~agfl~~l~   27 (82)
                      +=.+++-|+|.||++ .+||++.+.
T Consensus       421 vc~~P~~TVGlGD~ISa~gfv~~l~  445 (450)
T d1u2xa_         421 LVQNPVLTVGLGDTISAGAFLTYLE  445 (450)
T ss_dssp             CCSSCSCCTTHHHHHHHHHHHHHHH
T ss_pred             ccCCCCccccCchHhhHHHHHHHHH
Confidence            334567899999999 668888875

>d1ua4a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: ADP-specific Phosphofructokinase/Glucokinase
domain: ADP-dependent glucokinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.62  E-value=0.22  Score=34.75  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=18.5

Q ss_pred             CCCCccCccchHHHH-HHHHHHHHh
Q 040065            4 ITPFTCDRTGSGDAV-VAAILRKLT   27 (82)
Q Consensus         4 ~~~~vvDttGAGDaf-~agfl~~l~   27 (82)
                      +=.+++-|+|.||++ .+||+..+.
T Consensus       427 vc~~P~~TVGlGD~ISa~glv~ql~  451 (454)
T d1ua4a_         427 IVAKPKSTVGIGDTISSSAFIGEFS  451 (454)
T ss_dssp             CCSSCSCCTTHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCcccCchhhhHHHHHHHHh
Confidence            334567899999999 558988775

>d1gc5a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: ADP-specific Phosphofructokinase/Glucokinase
domain: ADP-dependent glucokinase
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=86.35  E-value=0.29  Score=34.24  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=17.4

Q ss_pred             CCccCccchHHHH-HHHHHHHHh
Q 040065            6 PFTCDRTGSGDAV-VAAILRKLT   27 (82)
Q Consensus         6 ~~vvDttGAGDaf-~agfl~~l~   27 (82)
                      ..++-|+|.||++ .+||++.+.
T Consensus       441 ~~P~~TVGlGD~ISA~glv~ql~  463 (467)
T d1gc5a_         441 ASPKSTVGIGDTISSSAFVSEFG  463 (467)
T ss_dssp             SSCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCcccCchhhhHHHHHHHHH
Confidence            3567899999999 558887765

>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: YjeF C-terminal domain-like
domain: Hypothetical protein TM0922, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.38  E-value=2.5  Score=26.86  Aligned_cols=36  Identities=17%  Similarity=0.079  Sum_probs=26.3

Q ss_pred             cCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHH
Q 040065            9 CDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGI   51 (82)
Q Consensus         9 vDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa   51 (82)
                      ..|.|.||...|-+..-+.       ++.+..++...|+..-+
T Consensus       213 la~~GtGDvLaGiIaallA-------q~~~~~~A~~~a~~lhg  248 (278)
T d2ax3a1         213 LSKGGSGDVLTGMIAGFIA-------QGLSPLEASTVSVYLHG  248 (278)
T ss_dssp             CSSTTHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHH
Confidence            4578999998766655556       78888888888864433

>d1l2la_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: ADP-specific Phosphofructokinase/Glucokinase
domain: ADP-dependent glucokinase
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=81.76  E-value=0.34  Score=33.69  Aligned_cols=22  Identities=18%  Similarity=0.354  Sum_probs=12.2

Q ss_pred             CCccCccchHHHH-HHHHHHHHh
Q 040065            6 PFTCDRTGSGDAV-VAAILRKLT   27 (82)
Q Consensus         6 ~~vvDttGAGDaf-~agfl~~l~   27 (82)
                      .+++-|+|.||++ .+||+..+.
T Consensus       427 ~~p~~TVGlGD~ISa~glv~ql~  449 (451)
T d1l2la_         427 KKPKSTVGIGDTISSSAFVSEFS  449 (451)
T ss_dssp             -------CTTHHHHHHHHHHHHH
T ss_pred             CCCCCcccCchhhhHHHHHHHhc
Confidence            3467799999999 558887664