Citrus Sinensis ID: 040083

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-----
VFRFKKFGDNGYPVEFDEAFRHNVEALLEFGQIHRNLCIGMPCWSFQLEVRRHPPFHVFLFVIEEPVEASMDHQCKHCRYVGWGHHMVCIKKYHFILPSKNMAAAYLNFQGNEGEDAGMLSNLMQLQGHAMHGVFHSNGFGHLLCVNGVETGSDLTGHQIMDFWDRLCSGLQARKVSLYDISRKKGMELRLLHVVAYSQSWFGHWGYKFGRGSFGVTQPMYQKAIEAIQGMPLCLLLNHLGHLNPDIPLIFTRYQTLSDHFLATLGDLFHFLLDLKSRLPKENCNFGSYNPGILVETNCRWSAKRVEMATRVIVESLKRAESRWVSRQEVRDVARSYVGDTGLLDFVLKSLGNHIVGKYLVRRSLNPVTKVLEYCLEDISNVFPEQDLVLGNSKTKTRYRISVAQLMKDVRILYKLILHDQKPATSSGIFSGISVASRIILDTKYFVKECCRDQVCSTKPGLDLEGKLKLYCTVILRDGENPNGGRSNSAMQPYECVTIKNNATFDELKLEVQRNFRELYWGLRSFVIESIVNVNATGTDLVCGFVEVGRRIVFEGSNSERGIVYGQIYENGMVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEIVHLSSLP
ccccccccccccccccccHHHHHHHHHHHccccccccccccccEEEEEEEcccccEEEEEEEEEEcccccccccccccEEEcccccccccccEEEEEEcccHHHHHHcccccccccHHHHHcccccccccccEEEEccccccEEEEcccccccccccHHHHHHHHHHHHcccEEEEEEEEcccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHcccHHHHHcccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHcccEEEccEEEEEEEcccccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccEEEccccccccccccccccccEEEEEEEEEccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccccEEcccccccEEEEccccccccccccccccccccccEEEEEccccccccccEEEccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccHHHHHHHHHHHHccccccccccccEEEEEEEEcccccEEEEEEEEEccccccccccccccEEEEcccccccccEEEEEEEcccccccccccccccccccccHHHHccccccEEEEEEEcccccEEEEEccccccccccHHHHHHHHHHHHHHccccEEEEEEHHcccccEEEEHHHHHccccccccccEEEccccccccHHHHHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHccccEEccEEEEEEEcccccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHcccccccccccccEEEEEEEEEcccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHcEHHHccccccccccccEcccccccEEEEEcccccccccEEEEcccccccEEEEEEcccccccccEEEEEccccEEEEEEcccccccccccccEEcccccHccccccccc
vfrfkkfgdngypvefDEAFRHNVEALLEFGQIHRnlcigmpcwsfqlevrrhppfhVFLFVIeepveasmdhqckhcryvgwghhmVCIKKYHFILPSKNMAAAYLNFqgnegedagMLSNLMQlqghamhgvfhsngfGHLLCVNgvetgsdltghqIMDFWDRLCSGLQARKVSLYDISRKKGMELRLLHVVAYSQswfghwgykfgrgsfgvtqpMYQKAIEAIQGMPLCLLLNhlghlnpdiplIFTRYQTLSDHFLATLGDLFHFLLDLksrlpkencnfgsynpgilvetNCRWSAKRVEMATRVIVESLKRAESRWVSRQEVRDVARSYVGDTGLLDFVLKSLGNHIVGKYLVRRSLNPVTKVLEYCLEDisnvfpeqdlvlgnsktktRYRISVAQLMKDVRILYKLILhdqkpatssgifsgISVASRIILDTKYFVKeccrdqvcstkpgldlegklKLYCTVILrdgenpnggrsnsamqpyecvtiknnatfdELKLEVQRNFRELYWGLRSFVIESIVnvnatgtdlVCGFVEVGRRIvfegsnsergivYGQIYENGMVNCVVEcacgadeddgermvscDICEvwqhtrcaripnneeiphiflCNRCEQEIVHLSSLP
vfrfkkfgdngypVEFDEAFRHNVEALLEFGQIHRNLCIGMPCWSFQLEVRRHPPFHVFLFVIEEPVEASMDHQCKHCRYVGWGHHMVCIKKYHFILPSKNMAAAYLNFQGNEGEDAGMLSNLMQLQGHAMHGVFHSNGFGHLLCVNGVETGSDLTGHQIMDFWDRLCSGLQARKVSLYDISRKKGMELRLLHVVAYSQSWFGHWGYKFGRGSFGVTQPMYQKAIEAIQGMPLCLLLNHLGHLNPDIPLIFTRYQTLSDHFLATLGDLFHFLLDLKSRLPKENCNFGSYNPGILVETNCRWSAKRVEMATRVIVEslkraesrwvsrqevrdvARSYVGDTGLLDFVLKSLGNHivgkylvrrslNPVTKVLEYCLEDIsnvfpeqdlvlgnsktktryrISVAQLMKDVRILYKLILHdqkpatssgifsgisvASRIILDTKYFVKECCRDQVcstkpgldlegkLKLYCTVILRdgenpnggrsnsaMQPYECVTIKNNATFDELKLEVQRNFRELYWGLRSFVIESIVNVNATGTDLVCGFVEVGRRIvfegsnsergiVYGQIYENGMVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEIVHLSSLP
VFRFKKFGDNGYPVEFDEAFRHNVEALLEFGQIHRNLCIGMPCWSFQLEVRRHPPFHVFLFVIEEPVEASMDHQCKHCRYVGWGHHMVCIKKYHFILPSKNMAAAYLNFQGNEGEDAGMLSNLMQLQGHAMHGVFHSNGFGHLLCVNGVETGSDLTGHQIMDFWDRLCSGLQARKVSLYDISRKKGMELRLLHVVAYSQSWFGHWGYKFGRGSFGVTQPMYQKAIEAIQGMPlclllnhlghlnPDIPLIFTRYQTLSDHFLATLGDLFHFLLDLKSRLPKENCNFGSYNPGILVETNCRWSAKRVEMATRVIVESLKRAESRWVSRQEVRDVARSYVGDTGLLDFVLKSLGNHIVGKYLVRRSLNPVTKVLEYCLEDISNVFPEQDLVLGNSKTKTRYRISVAQLMKDVRILYKLILHDQKPATSSGIFSGISVASRIILDTKYFVKECCRDQVCSTKPGLDLEGKLKLYCTVILRDGENPNGGRSNSAMQPYECVTIKNNATFDELKLEVQRNFRELYWGLRSFVIESIVNVNATGTDLVCGFVEVGRRIVFEGSNSERGIVYGQIYENGMVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEIVHLSSLP
*****KFGDNGYPVEFDEAFRHNVEALLEFGQIHRNLCIGMPCWSFQLEVRRHPPFHVFLFVIEEPVEASMDHQCKHCRYVGWGHHMVCIKKYHFILPSKNMAAAYLNFQGNEGEDAGMLSNLMQLQGHAMHGVFHSNGFGHLLCVNGVETGSDLTGHQIMDFWDRLCSGLQARKVSLYDISRKKGMELRLLHVVAYSQSWFGHWGYKFGRGSFGVTQPMYQKAIEAIQGMPLCLLLNHLGHLNPDIPLIFTRYQTLSDHFLATLGDLFHFLLDLKSRLPKENCNFGSYNPGILVETNCRWSAKRVEMATRVIVESLKRAESRWVSRQEVRDVARSYVGDTGLLDFVLKSLGNHIVGKYLVRRSLNPVTKVLEYCLEDISNVFPEQDLVLGNSKTKTRYRISVAQLMKDVRILYKLILHDQKPATSSGIFSGISVASRIILDTKYFVKECCRDQVCSTKPGLDLEGKLKLYCTVILRD**************PYECVTIKNNATFDELKLEVQRNFRELYWGLRSFVIESIVNVNATGTDLVCGFVEVGRRIVFEGSNSERGIVYGQIYENGMVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEIVH*****
VFRFKKFGDNGYPVEFDEAFRHNVEALLEFGQIHRNLCIGMPCWSFQLEVRRHPPFHVFLFVIEEPVEASMDHQCKHCRYVGWGHHMVCIKKYHFILPSKNMAAAYLNFQGNEGEDAGMLSNLMQLQGHAMHGVFHSNGFGHLLCVNGVETGSDLTGHQIMDFWDRLCSGLQARKVSLYDISRKKGMELRLLHVVAYSQSWFGHWGYKFGRGSFGVTQPMYQKAIEAIQGMPLCLLLNHLGHLNPDIPLIFTRYQTLSDHFLATLGDLFHFLLDL*************************WSAKRVEMATRVIVESLKRAESRWVSRQEVRDVARSYVGDTGLLDFVLKSLGNHIVGKYLVRRSLNPVTKVLEYCLED********************YRISVAQLMKDVRILYKLILHDQKP************ASRIILDTKYFVKECCRDQVCSTKPGLDLEGKLKLYCTVI******************YECVTIKNNATFDELKLEVQRNFRELYWGLR***************************************************CVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQE********
VFRFKKFGDNGYPVEFDEAFRHNVEALLEFGQIHRNLCIGMPCWSFQLEVRRHPPFHVFLFVIEEPVEASMDHQCKHCRYVGWGHHMVCIKKYHFILPSKNMAAAYLNFQGNEGEDAGMLSNLMQLQGHAMHGVFHSNGFGHLLCVNGVETGSDLTGHQIMDFWDRLCSGLQARKVSLYDISRKKGMELRLLHVVAYSQSWFGHWGYKFGRGSFGVTQPMYQKAIEAIQGMPLCLLLNHLGHLNPDIPLIFTRYQTLSDHFLATLGDLFHFLLDLKSRLPKENCNFGSYNPGILVETNCRWSAKRVEMATRVIVESLKRAESRWVSRQEVRDVARSYVGDTGLLDFVLKSLGNHIVGKYLVRRSLNPVTKVLEYCLEDISNVFPEQDLVLGNSKTKTRYRISVAQLMKDVRILYKLILHDQKPATSSGIFSGISVASRIILDTKYFVKECCRDQVCSTKPGLDLEGKLKLYCTVILRDGENPNGGRSNSAMQPYECVTIKNNATFDELKLEVQRNFRELYWGLRSFVIESIVNVNATGTDLVCGFVEVGRRIVFEGSNSERGIVYGQIYENGMVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEIVHLSSLP
VFRFKKFGDNGYPVEFDEAFRHNVEALLEFGQIHRNLCIGMPCWSFQLEVRRHPPFHVFLFVIEEPVEASMDHQCKHCRYVGWGHHMVCIKKYHFILPSKNMAAAYLNFQGNEGEDAGMLSNLMQLQGHAMHGVFHSNGFGHLLCVNGVETGSDLTGHQIMDFWDRLCSGLQARKVSLYDISRKKGMELRLLHVVAYSQSWFGHWGYKFGRGSFGVTQPMYQKAIEAIQGMPLCLLLNHLGHLNPDIPLIFTRYQTLSDHFLATLGDLFHFLLDLKSRLP***************ETNCRWSAKRVEMATRVIVESLKRAESRWVSRQEVRDVARSYVGDTGLLDFVLKSLGNHIVGKYLVRRSLNPVTKVLEYCLEDISNV*************KTRYRISVAQLMKDVRILYKLILHDQKPATSSGIFSGISVASRIILDTKYFVKECCRDQVCSTKPGLDLEGKLKLYCTVILRDGENPNGGRSNSAMQPYECVTIKNNATFDELKLEVQRNFRELYWGLRSFVIESIVNVNATGTDLVCGFVEVGRRIVFEGSNSERGIVYGQIYENGMVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEIVH*****
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VFRFKKFGDNGYPVEFDEAFRHNVEALLEFGQIHRNLCIGMPCWSFQLEVRRHPPFHVFLFVIEEPVEASMDHQCKHCRYVGWGHHMVCIKKYHFILPSKNMAAAYLNFQGNEGEDAGMLSNLMQLQGHAMHGVFHSNGFGHLLCVNGVETGSDLTGHQIMDFWDRLCSGLQARKVSLYDISRKKGMELRLLHVVAYSQSWFGHWGYKFGRGSFGVTQPMYQKAIEAIQGMPLCLLLNHLGHLNPDIPLIFTRYQTLSDHFLATLGDLFHFLLDLKSRLPKENCNFGSYNPGILVETNCRWSAKRVEMATRVIVESLKRAESRWVSRQEVRDVARSYVGDTGLLDFVLKSLGNHIVGKYLVRRSLNPVTKVLEYCLEDISNVFPEQDLVLGNSKTKTRYRISVAQLMKDVRILYKLILHDQKPATSSGIFSGISVASRIILDTKYFVKECCRDQVCSTKPGLDLEGKLKLYCTVILRDGENPNGGRSNSAMQPYECVTIKNNATFDELKLEVQRNFRELYWGLRSFVIESIVNVNATGTDLVCGFVEVGRRIVFEGSNSERGIVYGQIYENGMVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEIVHLSSLP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query635 2.2.26 [Sep-21-2011]
Q9FMS5672 PHD finger protein MALE S yes no 0.988 0.934 0.509 0.0
Q7X6Y7704 PHD finger protein MALE M no no 0.921 0.830 0.331 1e-92
Q9C810697 PHD finger protein At1g33 no no 0.840 0.766 0.354 6e-82
Q9ZUA9697 PHD finger protein At2g01 no no 0.891 0.812 0.303 3e-73
P93310160 Uncharacterized mitochond no no 0.159 0.631 0.413 4e-12
Q6C0K9 822 Transcription factor BYE1 no no 0.080 0.062 0.418 1e-05
Q8IZD2 1858 Histone-lysine N-methyltr yes no 0.074 0.025 0.469 3e-05
Q3UG20 1868 Histone-lysine N-methyltr yes no 0.074 0.025 0.469 4e-05
A5DDB7 752 Transcription factor BYE1 N/A no 0.096 0.081 0.323 7e-05
Q9NR48 2969 Histone-lysine N-methyltr no no 0.184 0.039 0.297 0.0007
>sp|Q9FMS5|MS1_ARATH PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana GN=MS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/656 (50%), Positives = 443/656 (67%), Gaps = 28/656 (4%)

Query: 1   VFRFKKFGDNGYPVEFDE-AFRHNVEALLEFGQIHRNLCIGMPCWSFQLEVRRHP-PFHV 58
           VFR K FG++G+P E +E +FR N+  LLEFG    +  +G   WSFQLE++R+P P +V
Sbjct: 24  VFRLKTFGESGHPAEMNELSFRDNLAKLLEFGHFESSGLMG--SWSFQLEIQRNPNPLYV 81

Query: 59  FLFVIEEPVEASMDHQCKHCRYVGWGHHMVCIKKYHFILPSKNMAAAYLNFQGN--EGED 116
            LFV+EEP+EAS++ +C HC+YVGWG+ M+C KKYHF++PSK   AA+L  +G      +
Sbjct: 82  LLFVVEEPIEASLNLRCNHCQYVGWGNQMICNKKYHFVIPSKETMAAFLKLEGGGYAFPE 141

Query: 117 AGMLSNLMQLQGHAMHGVFHSNGFGHLLCVNGVETGSDLTGHQIMDFWDRLCSGLQARKV 176
               S+L++LQGH +HG FHSNGFGHLL +NG+ETGSDLTGHQ+MD WDRLC+GL+ARK+
Sbjct: 142 KESFSHLVELQGHVLHGFFHSNGFGHLLSLNGIETGSDLTGHQVMDLWDRLCTGLKARKI 201

Query: 177 SLYDISRKKGMELRLLHVVAYSQSWFGHWGYKFGRGSFGVTQPMYQKAIEAIQGMPLCLL 236
            L D S KKGMELRLLH VA  + WFG WGY+FG G++GVTQ +Y+KA+E+++ +PLCLL
Sbjct: 202 GLNDASHKKGMELRLLHGVAKGEPWFGRWGYRFGSGTYGVTQKIYEKALESVRNIPLCLL 261

Query: 237 LNHLGHLNPDIPLIFTRYQTLSDHFLATLGDLFHFLLDLKSRLPKENCNFGSYNPGILVE 296
            +HL  LN + P++ ++YQ+LS   L TL DLF F+L L SRLP++N    S N  I ++
Sbjct: 262 NHHLTSLNRETPILLSKYQSLSTEPLITLSDLFRFMLHLHSRLPRDNYMSNSRNQIISID 321

Query: 297 -TNCRWSAKRVEMATRVIVESLKRAESRWVSRQEVRDVARSYVGDTGLLDFVLKSLGNHI 355
            TNCRWS KR++MA +V++ESLKR E RW+SRQEVRD AR+Y+GDTGLLDFVLKSLGN +
Sbjct: 322 STNCRWSQKRIQMAIKVVIESLKRVEYRWISRQEVRDAARNYIGDTGLLDFVLKSLGNQV 381

Query: 356 VGKYLVRRSLNPVTKVLEYCLEDISNVFPE--QDLV-------LGNSKTKTRYRISVAQL 406
           VG YLVRRSLNPV KVLEY LEDISN+ P    +L+       +G   T    +I+  Q+
Sbjct: 382 VGNYLVRRSLNPVKKVLEYSLEDISNLLPSSNNELITLQNQNSMGKMATNGHNKITRGQV 441

Query: 407 MKDVRILYKLILHDQKPATS--SGIFSGISVASRIILDTKYFVKE--CCRDQVCSTKPGL 462
           MKD+   YK IL D K       GI + I +ASR ILD KYF+KE    RD    T   L
Sbjct: 442 MKDMFYFYKHILMDYKGVLGPIGGILNQIGMASRAILDAKYFIKEYHYIRDTSAKTLH-L 500

Query: 463 DLEGKLKLYCTVILRDGENPNGGRSNSAMQPYECVTIKNNATFDELKLEVQRNFRELYWG 522
           D   +L ++CT+  +   + N       + P EC+ +K +AT  E+  E +R FR++YW 
Sbjct: 501 DRGEELGIFCTIAWKCHHHNN----EIKVPPQECIVVKKDATLSEVYGEAERVFRDIYWE 556

Query: 523 LRSFVIESIVNVNATGTDLVCGFVEVGRRIVFEGS-NSERGIVYGQIYENGMVNCV--VE 579
           LR  V+ES+V      T +    +   + +V EG+      I   + YE+        +E
Sbjct: 557 LRDVVVESVVGGQIEITRVDEMALNGNKGLVLEGNVGMMMNIEVTKCYEDDDKKKDKRIE 616

Query: 580 CACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEIVHLSSLP 635
           C CGA E+DGERMV CDICEVWQHTRC  + +NEE+P IFLC  C+Q ++ LS LP
Sbjct: 617 CECGATEEDGERMVCCDICEVWQHTRCVGVQHNEEVPRIFLCQSCDQHLIPLSFLP 672
Transcriptional activator required for anther and post-meiotic pollen development and maturation. Seems to regulate inflorescence branching and floral development. May control tapetal development by directly regulating tapetal programmed cell death (PCD) and breakdown. Implicated in pollen cytosolic components and wall development (e.g. exine and intine formation).
Arabidopsis thaliana (taxid: 3702)
>sp|Q7X6Y7|MMD1_ARATH PHD finger protein MALE MEIOCYTE DEATH 1 OS=Arabidopsis thaliana GN=MMD1 PE=2 SV=1 Back     alignment and function description
>sp|Q9C810|Y1342_ARATH PHD finger protein At1g33420 OS=Arabidopsis thaliana GN=At1g33420 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZUA9|Y2181_ARATH PHD finger protein At2g01810 OS=Arabidopsis thaliana GN=At2g01810 PE=3 SV=1 Back     alignment and function description
>sp|P93310|M550_ARATH Uncharacterized mitochondrial protein AtMg00550 OS=Arabidopsis thaliana GN=AtMg00550 PE=2 SV=3 Back     alignment and function description
>sp|Q6C0K9|BYE1_YARLI Transcription factor BYE1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=BYE1 PE=3 SV=1 Back     alignment and function description
>sp|Q8IZD2|MLL5_HUMAN Histone-lysine N-methyltransferase MLL5 OS=Homo sapiens GN=MLL5 PE=1 SV=1 Back     alignment and function description
>sp|Q3UG20|MLL5_MOUSE Histone-lysine N-methyltransferase MLL5 OS=Mus musculus GN=Mll5 PE=1 SV=2 Back     alignment and function description
>sp|A5DDB7|BYE1_PICGU Transcription factor BYE1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=BYE1 PE=3 SV=2 Back     alignment and function description
>sp|Q9NR48|ASH1L_HUMAN Histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query635
225424488646 PREDICTED: PHD finger protein MALE STERI 0.987 0.970 0.667 0.0
255561805652 DNA binding protein, putative [Ricinus c 0.993 0.967 0.648 0.0
224111394647 predicted protein [Populus trichocarpa] 0.988 0.970 0.654 0.0
147797196705 hypothetical protein VITISV_041469 [Viti 0.940 0.846 0.658 0.0
356499807656 PREDICTED: PHD finger protein MALE STERI 0.985 0.954 0.618 0.0
357486971666 Histone-lysine N-methyltransferase MLL5 0.993 0.947 0.603 0.0
449445324643 PREDICTED: PHD finger protein MALE STERI 0.965 0.953 0.568 0.0
449481275643 PREDICTED: PHD finger protein MALE STERI 0.965 0.953 0.567 0.0
297812345673 hypothetical protein ARALYDRAFT_489076 [ 0.968 0.913 0.505 0.0
15242181672 RING/FYVE/PHD zinc finger-containing pro 0.988 0.934 0.509 0.0
>gi|225424488|ref|XP_002281717.1| PREDICTED: PHD finger protein MALE STERILITY 1 [Vitis vinifera] gi|297737572|emb|CBI26773.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/637 (66%), Positives = 505/637 (79%), Gaps = 10/637 (1%)

Query: 1   VFRFKKFGDNGYPVEFDEAFRHNVEALLEFGQIHRNLCIGMPCWSFQLEVRRHPPFHVFL 60
           VFRFK FG+ GYP EF  +FR NV ALLEFG I  N+  GM CWSFQLE+  HPP H+ L
Sbjct: 18  VFRFKTFGEKGYPAEFKGSFRENVAALLEFGHIESNMSCGMLCWSFQLELHSHPPAHILL 77

Query: 61  FVIEEPVEASMDHQCKHCRYVGWGHHMVCIKKYHFILPSKNMAAAYLNFQGNEGEDAGML 120
           FV+EEP+ AS    C HC+YVGWGHHM+C +KYHF++PS+   A + +    EG D+   
Sbjct: 78  FVVEEPIGASTHRHCNHCKYVGWGHHMICNRKYHFVVPSRETEAVFGHDSNYEGPDSRKG 137

Query: 121 S-NLMQLQGHAMHGVFHSNGFGHLLCVNGVETGSDLTGHQIMDFWDRLCSGLQARKVSLY 179
             +++ ++GHAMHGV HSNGFGHLLCVNG+E GSDL G  IMDFWDRLC+ L+ARKVS+Y
Sbjct: 138 ERSIVGVEGHAMHGVIHSNGFGHLLCVNGLEMGSDLAGRHIMDFWDRLCTSLRARKVSIY 197

Query: 180 DISRKKGMELRLLHVVAYSQSWFGHWGYKFGRGSFGVTQPMYQKAIEAIQGMPLCLLLNH 239
           DIS+KKGM+LRLLH VAYS+ WFG WGY FGRGSFGVTQPMYQKAI+AIQGMPLCLL++H
Sbjct: 198 DISQKKGMDLRLLHGVAYSKPWFGRWGYGFGRGSFGVTQPMYQKAIDAIQGMPLCLLIHH 257

Query: 240 LGHLNPDIPLIFTRYQTLSDHFLATLGDLFHFLLDLKSRLPKENCNFGSYNPGILVETNC 299
           LG  N DIPLIF+RYQTLSDH L T+G+LFHF+L+LKSRLPKE C   SYNPGI VET C
Sbjct: 258 LGSSNHDIPLIFSRYQTLSDHSLVTVGNLFHFMLELKSRLPKETC-LDSYNPGISVETTC 316

Query: 300 RWSAKRVEMATRVIVESLKRAESRWVSRQEVRDVARSYVGDTGLLDFVLKSLGNHIVGKY 359
           RWS KRVEMA RVIVE+L+RAE RWVSRQEVRD AR+Y+GDTGLLDFVLKSLGNHIVG Y
Sbjct: 317 RWSPKRVEMAARVIVEALRRAEFRWVSRQEVRDAARAYIGDTGLLDFVLKSLGNHIVGNY 376

Query: 360 LVRRSLNPVTKVLEYCLEDISNVFP-EQDLVLGNSKTKTRYRISVAQLMKDVRILYKLIL 418
           LVRRSLNPVTKVLEYCLEDIS VFP ++ L + +SK K RY+I+  QLMKD+  LYK IL
Sbjct: 377 LVRRSLNPVTKVLEYCLEDISTVFPSDEGLAMNDSKLKARYKITRIQLMKDMFYLYKNIL 436

Query: 419 HDQKPATSSGIFSGISVASRIILDTKYFVKECCRDQVCSTKPGLDLEGKLKLYCTVILRD 478
            +QK   ++GIFS I VA+R+ILDTKY +KE C  Q    K G      LKLYCTV+ R+
Sbjct: 437 KEQKQTVATGIFSTIPVAARVILDTKYLIKEYCGGQPSEVKVG------LKLYCTVVSRN 490

Query: 479 GENPNGGRSNSAMQPYECVTIKNNATFDELKLEVQRNFRELYWGLRSFVIESIVNVNATG 538
            +  + G    A+ P+EC+  K+N+T +ELKLEV+RNFRE+YWGLRSF +ESIVN+NA G
Sbjct: 491 NDEDDDG-IEKALPPFECIIFKDNSTVNELKLEVERNFREIYWGLRSFCVESIVNLNAKG 549

Query: 539 TDLVCGFVEVGRRIVFEGSNSERGIVYGQIYENGMVNCVVECACGADEDDGERMVSCDIC 598
           +DLV G VE G  ++FEG++S+ GI    IYE+G  NC V+C CGA +DDGERM+SCDIC
Sbjct: 550 SDLVFGLVEAGSELLFEGNDSKVGINNEGIYESGHNNCTVDCPCGAKDDDGERMISCDIC 609

Query: 599 EVWQHTRCARIPNNEEIPHIFLCNRCEQEIVHLSSLP 635
           EVWQHTRCA+IPNNEEIPHIFLCN+CEQEI+   SLP
Sbjct: 610 EVWQHTRCAQIPNNEEIPHIFLCNQCEQEIILFPSLP 646

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255561805|ref|XP_002521912.1| DNA binding protein, putative [Ricinus communis] gi|223538950|gb|EEF40548.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224111394|ref|XP_002315838.1| predicted protein [Populus trichocarpa] gi|222864878|gb|EEF02009.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147797196|emb|CAN78037.1| hypothetical protein VITISV_041469 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356499807|ref|XP_003518728.1| PREDICTED: PHD finger protein MALE STERILITY 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357486971|ref|XP_003613773.1| Histone-lysine N-methyltransferase MLL5 [Medicago truncatula] gi|355515108|gb|AES96731.1| Histone-lysine N-methyltransferase MLL5 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449445324|ref|XP_004140423.1| PREDICTED: PHD finger protein MALE STERILITY 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449481275|ref|XP_004156135.1| PREDICTED: PHD finger protein MALE STERILITY 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297812345|ref|XP_002874056.1| hypothetical protein ARALYDRAFT_489076 [Arabidopsis lyrata subsp. lyrata] gi|297319893|gb|EFH50315.1| hypothetical protein ARALYDRAFT_489076 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15242181|ref|NP_197618.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gi|75262726|sp|Q9FMS5.1|MS1_ARATH RecName: Full=PHD finger protein MALE STERILITY 1 gi|9757806|dbj|BAB08324.1| unnamed protein product [Arabidopsis thaliana] gi|332005619|gb|AED93002.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query635
TAIR|locus:2176317672 MS1 "AT5G22260" [Arabidopsis t 0.985 0.931 0.496 9.4e-169
TAIR|locus:2013845704 MMD1 "AT1G66170" [Arabidopsis 0.415 0.375 0.387 7e-92
TAIR|locus:2006882697 AT1G33420 "AT1G33420" [Arabido 0.588 0.536 0.358 9.3e-84
TAIR|locus:2065388697 AT2G01810 "AT2G01810" [Arabido 0.392 0.357 0.379 1.8e-73
TAIR|locus:2828076196 AT2G07714 "AT2G07714" [Arabido 0.212 0.688 0.402 2e-20
UNIPROTKB|H0YI82154 ASH1L "Histone-lysine N-methyl 0.168 0.694 0.308 2.5e-06
TAIR|locus:2038021 1068 AT1G32810 [Arabidopsis thalian 0.074 0.044 0.46 2.8e-06
TAIR|locus:2139232 237 AT4G10600 "AT4G10600" [Arabido 0.080 0.215 0.413 4.4e-06
UNIPROTKB|C9JNE1230 MLL5 "Histone-lysine N-methylt 0.074 0.204 0.469 1.2e-05
RGD|1309641 478 Mll5 "myeloid/lymphoid or mixe 0.074 0.098 0.469 6.4e-05
TAIR|locus:2176317 MS1 "AT5G22260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1641 (582.7 bits), Expect = 9.4e-169, P = 9.4e-169
 Identities = 327/658 (49%), Positives = 437/658 (66%)

Query:     1 VFRFKKFGDNGYPVEFDE-AFRHNVEALLEFGQIHRNLCIGMPCWSFQLEVRRHP-PFHV 58
             VFR K FG++G+P E +E +FR N+  LLEFG    +  +G   WSFQLE++R+P P +V
Sbjct:    24 VFRLKTFGESGHPAEMNELSFRDNLAKLLEFGHFESSGLMGS--WSFQLEIQRNPNPLYV 81

Query:    59 FLFVIEEPVEASMDHQCKHCRYVGWGHHMVCIKKYHFILPSKNMAAAYLNFQGN--EGED 116
              LFV+EEP+EAS++ +C HC+YVGWG+ M+C KKYHF++PSK   AA+L  +G      +
Sbjct:    82 LLFVVEEPIEASLNLRCNHCQYVGWGNQMICNKKYHFVIPSKETMAAFLKLEGGGYAFPE 141

Query:   117 AGMLSNLMQLQGHAMHGVFHSNGFGHLLCVNGVETGSDLTGHQIMDFWDRLCSGLQARKV 176
                 S+L++LQGH +HG FHSNGFGHLL +NG+ETGSDLTGHQ+MD WDRLC+GL+ARK+
Sbjct:   142 KESFSHLVELQGHVLHGFFHSNGFGHLLSLNGIETGSDLTGHQVMDLWDRLCTGLKARKI 201

Query:   177 SLYDISRKKGMELRLLHVVAYSQSWFGHWGYKFGRGSFGVTQPMYQKAIEAIQGMPXXXX 236
              L D S KKGMELRLLH VA  + WFG WGY+FG G++GVTQ +Y+KA+E+++ +P    
Sbjct:   202 GLNDASHKKGMELRLLHGVAKGEPWFGRWGYRFGSGTYGVTQKIYEKALESVRNIPLCLL 261

Query:   237 XXXXXXXXPDIPLIFTRYQTLSDHFLATLGDLFHFLLDLKSRLPKENCNFGSYNPGILVE 296
                      + P++ ++YQ+LS   L TL DLF F+L L SRLP++N    S N  I ++
Sbjct:   262 NHHLTSLNRETPILLSKYQSLSTEPLITLSDLFRFMLHLHSRLPRDNYMSNSRNQIISID 321

Query:   297 -TNCRWSAKRVEMATRVIVESLKRAESRWVSRQEVRDVARSYVGDTGLLDFVLKSLGNHI 355
              TNCRWS KR++MA +V++ESLKR E RW+SRQEVRD AR+Y+GDTGLLDFVLKSLGN +
Sbjct:   322 STNCRWSQKRIQMAIKVVIESLKRVEYRWISRQEVRDAARNYIGDTGLLDFVLKSLGNQV 381

Query:   356 VGKYLVRRSLNPVTKVLEYCLEDISNVFPEQ--DLV-------LGNSKTKTRYRISVAQL 406
             VG YLVRRSLNPV KVLEY LEDISN+ P    +L+       +G   T    +I+  Q+
Sbjct:   382 VGNYLVRRSLNPVKKVLEYSLEDISNLLPSSNNELITLQNQNSMGKMATNGHNKITRGQV 441

Query:   407 MKDVRILYKLILHDQKPATS--SGIFSGISVASRIILDTKYFVKEC--CRDQVCSTKPGL 462
             MKD+   YK IL D K       GI + I +ASR ILD KYF+KE    RD    T   L
Sbjct:   442 MKDMFYFYKHILMDYKGVLGPIGGILNQIGMASRAILDAKYFIKEYHYIRDTSAKTLH-L 500

Query:   463 DLEGKLKLYCTVILRDGENPNGGRSNSAMQPYECVTIKNNATFDELKLEVQRNFRELYWG 522
             D   +L ++CT+  +   + N       + P EC+ +K +AT  E+  E +R FR++YW 
Sbjct:   501 DRGEELGIFCTIAWKCHHHNN----EIKVPPQECIVVKKDATLSEVYGEAERVFRDIYWE 556

Query:   523 LRSFVIESIVN--VNATGTDLVCGFVEVGRRIVFEGS-NSERGIVYGQIYENG--MVNCV 577
             LR  V+ES+V   +  T  D +   +   + +V EG+      I   + YE+     +  
Sbjct:   557 LRDVVVESVVGGQIEITRVDEMA--LNGNKGLVLEGNVGMMMNIEVTKCYEDDDKKKDKR 614

Query:   578 VECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEIVHLSSLP 635
             +EC CGA E+DGERMV CDICEVWQHTRC  + +NEE+P IFLC  C+Q ++ LS LP
Sbjct:   615 IECECGATEEDGERMVCCDICEVWQHTRCVGVQHNEEVPRIFLCQSCDQHLIPLSFLP 672
GO:0003677 "DNA binding" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005634 "nucleus" evidence=IDA
GO:0009846 "pollen germination" evidence=IMP
GO:0010208 "pollen wall assembly" evidence=IMP
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP
GO:0048655 "tapetal layer morphogenesis" evidence=IMP
GO:0055046 "microgametogenesis" evidence=IMP
GO:0071367 "cellular response to brassinosteroid stimulus" evidence=IEP
TAIR|locus:2013845 MMD1 "AT1G66170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006882 AT1G33420 "AT1G33420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065388 AT2G01810 "AT2G01810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2828076 AT2G07714 "AT2G07714" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|H0YI82 ASH1L "Histone-lysine N-methyltransferase ASH1L" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2038021 AT1G32810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139232 AT4G10600 "AT4G10600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|C9JNE1 MLL5 "Histone-lysine N-methyltransferase MLL5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1309641 Mll5 "myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FMS5MS1_ARATHNo assigned EC number0.50910.98890.9345yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query635
pfam0062851 pfam00628, PHD, PHD-finger 3e-06
smart0024947 smart00249, PHD, PHD zinc finger 3e-06
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information 
 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 580 CACGADEDDGERMVSCDICEVWQHTRCARIP-NNEEIPHI-FLCNRC 624
           CA     DD   ++ CD C+ W H  C   P   EEIP   + C  C
Sbjct: 2   CAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPEC 48

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 635
KOG1844508 consensus PHD Zn-finger proteins [General function 99.94
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.59
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.4
KOG1844 508 consensus PHD Zn-finger proteins [General function 98.29
KOG1973274 consensus Chromatin remodeling protein, contains P 98.19
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.91
KOG4323 464 consensus Polycomb-like PHD Zn-finger protein [Gen 96.92
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 96.69
KOG0954 893 consensus PHD finger protein [General function pre 94.79
KOG0825 1134 consensus PHD Zn-finger protein [General function 94.74
KOG0957 707 consensus PHD finger protein [General function pre 94.66
KOG1632 345 consensus Uncharacterized PHD Zn-finger protein [G 93.18
KOG1512381 consensus PHD Zn-finger protein [General function 91.94
KOG1632345 consensus Uncharacterized PHD Zn-finger protein [G 90.84
PF1040773 Cytokin_check_N: Cdc14 phosphatase binding protein 90.07
KOG1244336 consensus Predicted transcription factor Requiem/N 89.81
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 88.21
COG5141 669 PHD zinc finger-containing protein [General functi 84.54
PF07227 446 DUF1423: Protein of unknown function (DUF1423); In 83.41
PF0749650 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi 81.14
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information 
Probab=99.94  E-value=1.1e-27  Score=261.29  Aligned_cols=173  Identities=31%  Similarity=0.444  Sum_probs=159.2

Q ss_pred             CCCCcceEecCCCCcccCcceEEEeeCCchhhhhhccCCCCCCcccccccccccccccccceecccCccceEEecccccC
Q 040083           73 HQCKHCRYVGWGHHMVCIKKYHFILPSKNMAAAYLNFQGNEGEDAGMLSNLMQLQGHAMHGVFHSNGFGHLLCVNGVETG  152 (635)
Q Consensus        73 ~~Cd~Cr~vGW~~H~V~~krYHFIip~~~~~~~~~~c~~c~~~~~~~~~~~l~~~~HlLHGviH~NGfGHLl~vnGregg  152 (635)
                      ++|++|++.||+.|.+|+++||||||++..+         ..   +....+++.++|.+||.+|+||+||++++||+|.|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   80 (508)
T KOG1844|consen   13 PRCSHCCKFGWSPHLVANKKYEHIIPADAEL---------FE---ESTSQSNEPSTASPHGTAHEPGKGVLLSLNGSEAG   80 (508)
T ss_pred             cccccccccCCcccccccccccccccCCccc---------cc---CCchhhccccccccccccccCCCCccccccccccc
Confidence            8999999999999999999999999999876         33   45557899999999999999999999999999999


Q ss_pred             CCCcchhhhhhHHHHhhccceeeeeeeeccccccchhhhhhhhhcCCcccccccccccCcccccCH-HHHHHHHHHHhCC
Q 040083          153 SDLTGHQIMDFWDRLCSGLQARKVSLYDISRKKGMELRLLHVVAYSQSWFGHWGYKFGRGSFGVTQ-PMYQKAIEAIQGM  231 (635)
Q Consensus       153 S~lsG~~iM~~WDrlC~~L~~RkVSv~DvSkK~gmelRLLh~Va~G~sWyG~WGY~Fg~Gsfgvt~-~~Y~~Aie~Lss~  231 (635)
                      +.                  +++++..|.+.+..|     |+++.+++|+++|+|+|+-|+|+++. +.|..++...+++
T Consensus        81 ~~------------------~~~~~~c~c~~~~~~-----~g~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~~~  137 (508)
T KOG1844|consen   81 SE------------------AREISRCDCGLEDDM-----EGLMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPRNK  137 (508)
T ss_pred             cC------------------cCcccccccccccCC-----CceeeCCcccCcccCceeeeecCCCCchhceeeeeccccc
Confidence            98                  889999999999999     99999999999999999999999999 9999999999999


Q ss_pred             chh--hHhcccCCCCCChhHHHHHhhcccchhhhcHHHHHHHHHhhhhcCC
Q 040083          232 PLC--LLLNHLGHLNPDIPLIFTRYQTLSDHFLATLGDLFHFLLDLKSRLP  280 (635)
Q Consensus       232 pL~--~~~~~~~~~~~~l~~ii~~Yq~lS~~~L~Tl~dL~~fmL~l~~~~p  280 (635)
                      +++  .+.+.-+.....+..+.++|++++..++.+..+++++|+.+.+..+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (508)
T KOG1844|consen  138 EVERALALKRQSIEPEVLEPIRSTYRSLSQDSLDTTSDLKSFMLALISLST  188 (508)
T ss_pred             cchhhhhcccccccccccCccchhhhhhcccCCCchHHHHHHHhhccccCc
Confidence            999  4444444555688889999999999999999999999999998774

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp [] Back     alignment and domain information
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query635
1wee_A72 Solution Structure Of Phd Domain In Phd Finger Fami 7e-13
2lv9_A98 Solution Nmr Structure Of The Phd Domain Of Human M 1e-05
>pdb|1WEE|A Chain A, Solution Structure Of Phd Domain In Phd Finger Family Protein Length = 72 Back     alignment and structure 
Iteration: 1

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 37/55 (67%)
Query: 570 ENGMVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRC 624
           E G+ N  V+C CG  +DDGERM++CD C VW HTRC  I N + +P  FLC RC
Sbjct: 9   ERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRC 63
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5, Northeast Structural Genomics Consortium Target Hr6512a Length = 98 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query635
1wee_A72 PHD finger family protein; structural genomics, PH 9e-20
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 3e-13
3o70_A68 PHD finger protein 13; PHF13, structural genomics 1e-12
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 4e-11
1wew_A78 DNA-binding family protein; structural genomics, P 6e-11
2k16_A75 Transcription initiation factor TFIID subunit 3; p 4e-10
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1we9_A64 PHD finger family protein; structural genomics, PH 6e-09
1wem_A76 Death associated transcription factor 1; structura 4e-08
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 6e-08
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 2e-07
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 2e-05
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 7e-05
3kv5_D 488 JMJC domain-containing histone demethylation prote 9e-05
2ri7_A 174 Nucleosome-remodeling factor subunit BPTF; zinc fi 6e-04
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 7e-04
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
 Score = 82.6 bits (204), Expect = 9e-20
 Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 556 GSNSERGIVYGQIYENGMVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEI 615
           GS+   G+      E G+ N  V+C CG  +DDGERM++CD C VW HTRC  I N + +
Sbjct: 1   GSSGSSGM------ERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADAL 54

Query: 616 PHIFLCNRCEQ 626
           P  FLC RC +
Sbjct: 55  PSKFLCFRCIE 65
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query635
1wee_A72 PHD finger family protein; structural genomics, PH 99.64
1wew_A78 DNA-binding family protein; structural genomics, P 99.43
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 99.42
3o70_A68 PHD finger protein 13; PHF13, structural genomics 99.36
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 99.35
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 99.31
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 99.31
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 99.28
1we9_A64 PHD finger family protein; structural genomics, PH 99.28
1wem_A76 Death associated transcription factor 1; structura 99.25
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 99.07
2k16_A75 Transcription initiation factor TFIID subunit 3; p 98.97
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 98.88
2ri7_A 174 Nucleosome-remodeling factor subunit BPTF; zinc fi 98.87
3kv5_D 488 JMJC domain-containing histone demethylation prote 98.86
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 98.8
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 98.78
1x4i_A70 Inhibitor of growth protein 3; structural genomics 98.77
1weu_A91 Inhibitor of growth family, member 4; structural g 98.77
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 98.75
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 98.72
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 98.67
3lqh_A 183 Histone-lysine N-methyltransferase MLL; PHD finger 98.48
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 98.47
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 98.43
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 98.29
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 97.96
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 97.62
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 97.61
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 97.57
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 97.53
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 97.52
3rsn_A 177 SET1/ASH2 histone methyltransferase complex subun; 97.51
2yt5_A66 Metal-response element-binding transcription facto 97.5
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 97.43
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 97.38
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 97.36
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 97.29
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 97.2
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 97.19
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 97.01
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 96.97
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 96.88
3u5n_A 207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 96.86
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 96.74
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 96.59
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 96.56
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 96.31
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 96.12
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 94.91
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 93.89
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 89.94
2rno_A110 Putative DNA-binding protein; SUMO ligase, sumoyla 88.04
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 82.56
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 81.96
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 80.26
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
Probab=99.64  E-value=6.5e-17  Score=134.47  Aligned_cols=68  Identities=46%  Similarity=0.882  Sum_probs=60.3

Q ss_pred             cccccccCCCCceEEeecCCCCCCCcceeeccccCceeeccccccCCCCCCCCceecCCCcccccCCC
Q 040083          565 YGQIYENGMVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEIVHLS  632 (635)
Q Consensus       565 ~~~r~e~g~e~~~VrCiCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP~~y~C~~C~~~~~~~~  632 (635)
                      ...++|++++++.++|+||..++||++||+||.|+.|||+.|++|...+.+|+.|+|+.|..+..+..
T Consensus         4 ~~~~~e~~~~~~~~~C~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~pss   71 (72)
T 1wee_A            4 GSSGMERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPSS   71 (72)
T ss_dssp             CSCCCSCSSCSSEECCTTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSSCC
T ss_pred             ccccccCCCCCcceEeeCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCCCC
Confidence            34688888999999999999988898999999999999999999997666789999999998776543
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 635
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 5e-14
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 1e-09
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 6e-09
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 3e-08
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 3e-07
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 4e-06
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 1e-05
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 3e-04
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 8e-04
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 65.1 bits (158), Expect = 5e-14
 Identities = 30/57 (52%), Positives = 38/57 (66%)

Query: 570 ENGMVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQ 626
           E G+ N  V+C CG  +DDGERM++CD C VW HTRC  I N + +P  FLC RC +
Sbjct: 9   ERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query635
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 99.41
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 99.2
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 99.1
d1wema_76 Death associated transcription factor 1, Datf1 (DI 98.94
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.93
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.72
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 98.53
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.47
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.32
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.02
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 97.53
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.41  E-value=3.9e-14  Score=115.38  Aligned_cols=65  Identities=48%  Similarity=0.940  Sum_probs=56.6

Q ss_pred             ccccCCCCceEEeecCCCCCCCcceeeccccCceeeccccccCCCCCCCCceecCCCcccccCCC
Q 040083          568 IYENGMVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEIVHLS  632 (635)
Q Consensus       568 r~e~g~e~~~VrCiCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP~~y~C~~C~~~~~~~~  632 (635)
                      ..|.+.++|.++|+|+..+++++.||+||.|+.|||+.|+++...+..+..|+|+.|.....+..
T Consensus         7 ~~e~~~~~~~~~C~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~~~~p~s   71 (72)
T d1weea_           7 GMERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPSS   71 (72)
T ss_dssp             CCSCSSCSSEECCTTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSSCC
T ss_pred             CcccCCCCCeEEeeCCCCcCCCCeEEEeCCCCCcCchhhcCCccccCCCCcEECcCCcCcCCcCC
Confidence            34666789999999999888888999999999999999999987666678999999998877654
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure