Citrus Sinensis ID: 040097

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510------
Protein Sequence
MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVFVICDITPMHTCNQHSVKLQGRTKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMFVFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEFPRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWALFSMPEWVKSTEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAVRQQIIQNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELMTCTCRLWQLSGIPCPHACRCIDTWGDKLDTYVHRLMTVDEYRSAYGPGMNMLPEPMQWKLQLHD
Secondary Structure (PSIPRED)
cccEEccHHHHHHHHHHHHHHcccEEEEEEEcccEEEEEEEcccccEEEEEEEEccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHcccEEEEEEEccccccccccEEEEEEEEccccccEEcEEEEEEEEcccEEccccccEEEEEEEEccccccEEEEEEEEccccHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHHHccccEEEEEEEHHcccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHccccccHHHccccccccEEEccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEccEEEEEEEEccEEEcccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHccccEEEEEccccEEEEEEccccccEEEEEEEcccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHEEHHHHHHHHHHccccEEEEEcEEEccccccEEEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccEEEEEcccEEEEEEEcccEEEEEEEcccEEcccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
mgqrfkndvEFKTALEVNAIRDGFKLCIIHntttcvscecsnlhcdwKITAVkehrsnvfvicditpmhtcnqhsvkLQGRTKWIAAKFLHIWKQSEHREVDKLRNEIATtygikcpiwkLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMFVFLYDTAFVFKTRCRMLLTvdgweidspyKSVMLVAVCrdgndavlpIAFCEVVEENLDSWAFFLKNLNYGlrlergeglcimgdgdngIDEAVEEFLPSAVYRQCCFSLYTKMvdefprvtvhspfwgacrstdgntftNQMAVIQTISVECYnwlkdtdwhkwalfsmpewvksteITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAVRQQIIQNTfegegwtvdvtsrnaiavvTRDGLAYEINRELMTCTCRlwqlsgipcphacrcidtwgDKLDTYVHRLMTVDeyrsaygpgmnmlpepmqwklqlhd
Flexible Loop (DISEMBL)
mgqrfkndvefkTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVFVICDITPMHTCNQHSVKLQGRTKWIAAKFLHIWKQSEHREVDKLRNEIAttygikcpiwklEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMFVFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEFPRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWALFSMPEWVKSTEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAVRQQIIQNTfegegwtvdvtsrnAIAVVTRDGLAYEINRELMTCTCRLWQLSGIPCPHACRCIDTWGDKLDTYVHRLMTVDEYRSAYGPGMNMLPEpmqwklqlhd
Low Complexity Region (SEG)
MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVFVICDITPMHTCNQHSVKLQGRTKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMFVFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEFPRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWALFSMPEWVKSTEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAVRQQIIQNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELMTCTCRLWQLSGIPCPHACRCIDTWGDKLDTYVHRLMTVDEYRSAYGPGMNMLPEPMQWKLQLHD
Disordered region (IsUnstruct)
********VEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVFVICDITPMHTCNQHSVKLQGRTKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMFVFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEFPRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWALFSMPEWVKSTEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAVRQQIIQNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELMTCTCRLWQLSGIPCPHACRCIDTWGDKLDTYVHRLMTVDEYRSAYGP*****************
Disordered Region (DISOPRED)
MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVFVICDITPMHTCNQHSVKLQGRTKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMFVFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEFPRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWALFSMPEWVKSTEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAVRQQIIQNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELMTCTCRLWQLSGIPCPHACRCIDTWGDKLDTYVHRLMTVDEYRSAYGPGMNMLPEPM**K*****
Disordered Region (DISEMBL)
MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVFVICDITPMHTCNQHSVKLQGRTKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMFVFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEFPRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWALFSMPEWVKSTEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAVRQQIIQNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELMTCTCRLWQLSGIPCPHACRCIDTWGDKLDTYVHRLMTVDEYRSAYGPGMNMLPEPMQWKLQLHD
Disordered Region (DISPRO)
***RFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVFVICDITPMHTCNQHSVKLQGRTKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMFVFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEFPRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWALFSMPEWVKSTEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAVRQQIIQNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELMTCTCRLWQLSGIPCPHACRCIDTWGDKLDTYVHRLMTVDEYRSAYGPGMNMLPEPMQWKL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVFVICDITPMHTCNQHSVKLQGRTKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMFVFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEFPRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWALFSMPEWVKSTEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAVRQQIIQNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELMTCTCRLWQLSGIPCPHACRCIDTWGDKLDTYVHRLMTVDEYRSAYGPGMNMLPEPMQWKLQLHD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	516
449520056	582	PREDICTED: uncharacterized LOC101204073	0.967	0.857	0.260	8e-44
449459624	582	PREDICTED: uncharacterized protein LOC10	0.967	0.857	0.258	4e-43
225450448	768	PREDICTED: uncharacterized protein LOC10	0.963	0.647	0.249	2e-41
225429092	583	PREDICTED: uncharacterized protein LOC10	0.974	0.862	0.246	4e-41
147780251	1076	hypothetical protein VITISV_037761 [Viti	0.963	0.461	0.249	5e-41
225432189	746	PREDICTED: uncharacterized protein LOC10	0.934	0.646	0.241	3e-40
224105815	589	predicted protein [Populus trichocarpa]	0.974	0.853	0.244	5e-40
147865779	1147	hypothetical protein VITISV_020810 [Viti	0.934	0.420	0.241	6e-40
449485027	844	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.949	0.580	0.245	2e-39
359479587	752	PREDICTED: uncharacterized protein LOC10	0.976	0.670	0.252	3e-39

>gi|449520056|ref|XP_004167050.1| PREDICTED: uncharacterized LOC101204073 [Cucumis sativus]

 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 135/518 (26%), Positives = 230/518 (44%), Gaps = 19/518 (3%)

Query: 1   MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVF 60
           +GQ F +   F+ A++  AI   F+L II +       +C+   C W+I AVK   S +F
Sbjct: 8   VGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCAEEGCPWRIRAVKLPNSPIF 67

Query: 61  VICDITPMHTCNQHSVK--LQGRTKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCP- 117
            I  +   HTC Q++     Q    WI +      + + + +   + ++I   YGI  P 
Sbjct: 68  TIRSLQGTHTCGQNAQNGHHQASIDWIVSFIEERLRNNINYKPKDILHDIHKQYGITIPY 127

Query: 118 --IWKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFH 175
              W+ +       F       +GY  L  Y ++++  N  ++  + T      + + F 
Sbjct: 128 KQAWRAKERGLATIF---GSSEEGYGLLPSYCEQIKKANPGSVAEVFTTG----SDNHFQ 180

Query: 176 RMFVFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEEN 235
           R+FV  Y + + F   C  ++ + G E+ S Y   +L A   D +  + P+AF  V  EN
Sbjct: 181 RLFVSFYASIYGFLNGCFPVIGLGGIELKSKYLGTLLSATSYDADGGMFPVAFGVVDAEN 240

Query: 236 LDSWAFFLKNLNYGLRLE--RGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMV 293
            +SW +FL  L+  L++       L  + DG NGI +A+    P++ +  C   L   + 
Sbjct: 241 EESWLWFLSELHNALKMNAWNKFHLTFLSDGQNGILDALRRKFPNSSHALCMRYLSENIG 300

Query: 294 DEFPRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWALFSMPEWVK 353
            EF    + S  W A  +     F  +M+ I+ IS E   W++    H WAL    E  +
Sbjct: 301 KEFKNSRLVSLVWKAAYAKTTIAFKERMSDIEEISPEAAKWIQQFPPH-WALVYF-EGTR 358

Query: 354 STEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAVRQ 413
              ++ S  E+   W+L   +  I Q    I  K+   F+ R      W +  +TP+  +
Sbjct: 359 YGHLS-SNLEEFTKWILDARELPIIQVIERIHSKLMAEFEERRARSTSW-FSFLTPSAEK 416

Query: 414 QIIQNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELMTCTCRLWQLSGIPCPHACRCI 473
           +I++       + V  +      V++ D  +Y +N     C CR WQL GIPC HA   I
Sbjct: 417 RIVEAIKLASSYQVLQSDEVEFEVLSAD-RSYIVNIGKRCCLCRDWQLYGIPCSHAVAAI 475

Query: 474 DTWGDKLDTYVHRLMTVDEYRSAYGPGMNMLPEPMQWK 511
            +    +  ++ +  TV  YR AY   ++ +P  ++WK
Sbjct: 476 ASCRKDVHAFMEKCFTVSGYREAYEKSVHPIPRKLEWK 513

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459624|ref|XP_004147546.1| PREDICTED: uncharacterized protein LOC101204073 [Cucumis sativus]

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 134/518 (25%), Positives = 229/518 (44%), Gaps = 19/518 (3%)

Query: 1   MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVF 60
           +GQ F +   F+ A++  AI   F+L II +       +C+   C W+I AVK   S +F
Sbjct: 8   VGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCAEEGCPWRIRAVKLPNSPIF 67

Query: 61  VICDITPMHTCNQHSVK--LQGRTKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCP- 117
            I  +   HTC Q++     Q    WI +      + + + +   + ++I   YGI  P 
Sbjct: 68  TIRSLQGTHTCGQNAQNGHHQASIDWIVSFIEERLRNNINYKPKDILHDIHKQYGITIPY 127

Query: 118 --IWKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFH 175
              W+ +       F       +GY  L  Y ++++  N  ++  + T      + + F 
Sbjct: 128 KQAWRAKERGLATIF---GSSEEGYGLLPSYCEQIKKANPGSVAEVFTTG----SDNHFQ 180

Query: 176 RMFVFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEEN 235
           R+FV  Y + + F   C  ++ + G E+ S Y   +L A   D +  + P+AF  V  EN
Sbjct: 181 RLFVSFYASIYGFLNGCFPVIGLGGIELKSKYLGTLLSATSYDADGGMFPVAFGVVDAEN 240

Query: 236 LDSWAFFLKNLNYGLRLE--RGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMV 293
            +SW +FL  L+  L++       L  + DG  GI +A+    P++ +  C   L   + 
Sbjct: 241 EESWLWFLSELHNALKMNAWNKFHLTFLSDGQKGILDALRRKFPNSSHALCMRYLSENIG 300

Query: 294 DEFPRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWALFSMPEWVK 353
            EF    + S  W A  +     F  +M+ I+ IS E   W++    H WAL    E  +
Sbjct: 301 KEFKNSRLVSLVWKAAYAKTTIAFKERMSDIEEISPEAAKWIQQFPPH-WALVYF-EGTR 358

Query: 354 STEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAVRQ 413
              ++ S  E+   W+L   +  I Q    I  K+   F+ R      W +  +TP+  +
Sbjct: 359 YGHLS-SNLEEFTKWILDARELPIIQVIERIHSKLMAEFEERRARSTSW-FSFLTPSAEK 416

Query: 414 QIIQNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELMTCTCRLWQLSGIPCPHACRCI 473
           +I++       + V  +      V++ D  +Y +N     C CR WQL GIPC HA   I
Sbjct: 417 RIVEAIKLASSYQVLQSDEVEFEVLSAD-RSYIVNIGKRCCLCRDWQLYGIPCSHAVAAI 475

Query: 474 DTWGDKLDTYVHRLMTVDEYRSAYGPGMNMLPEPMQWK 511
            +    +  ++ +  TV  YR AY   ++ +P  ++WK
Sbjct: 476 ASCRKDVHAFMEKCFTVSGYREAYEKSVHPIPRKLEWK 513

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450448|ref|XP_002276424.1| PREDICTED: uncharacterized protein LOC100251030 [Vitis vinifera]

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/522 (24%), Positives = 229/522 (43%), Gaps = 25/522 (4%)

Query: 1   MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVF 60
           +GQRF    EF+ AL   AI   F      N +  V+ +C    C W+I A +   + + 
Sbjct: 203 VGQRFSGVHEFREALRKYAIAHQFAFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLI 262

Query: 61  VICDITPMHTCNQHSVK--LQGRTKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPI 118
            I  +   HTC    V    Q    W+A+  +   K   + +   + N+I   YGI+   
Sbjct: 263 CIKKMNATHTCEGAVVTTGYQATRSWVASIIMDKLKVFPNYKPKDIVNDIKQEYGIQLNY 322

Query: 119 WKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMF 178
           ++      + +  L+  + + Y+QL  + +++   N  +     TK    F     HR+F
Sbjct: 323 FQAWRGKEIAKEQLQGSYKEAYSQLPFFCEKIMETNPGSFATFTTKEDSSF-----HRLF 377

Query: 179 VFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDS 238
           V  + + + F+  CR LL +D   + S Y+  +L A   DG+D V P+AF  V  E  D+
Sbjct: 378 VSFHASLYGFQQGCRPLLFLDSISLKSKYQGTLLAATAADGDDGVFPVAFSVVDAETDDN 437

Query: 239 WAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVD---- 294
           W +FL  L   L   R   +  + D + G+ E++ E    + +  C   L  +++     
Sbjct: 438 WHWFLLQLKSALPTSR--PITFVADREKGLRESIAEIFQGSFHGYCLRYLTEQLLKDLKG 495

Query: 295 ----EFPRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWALFSMPE 350
               E  R+ V   F+ A  +    +F   +  I++IS+E YNWL  ++   WA  +  +
Sbjct: 496 QFSHEVKRLMVED-FYAAAYAPRPESFQRCLETIKSISLEAYNWLIQSEPMNWA-NAFFQ 553

Query: 351 WVKSTEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPA 410
             +   +  +  E    W  +  +  I Q    I  K+ E+F  R     +W+  ++TP+
Sbjct: 554 SARYNHMASNFGELFYSWASEAHELPITQMVDVIRGKIMELFFTRRTDSNQWM-TRLTPS 612

Query: 411 VRQQIIQNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELMTCTCRLWQLSGIPCPHAC 470
           + +++ + T +     V ++  N   V  R      ++ +   C+C+ WQL+G+PC HA 
Sbjct: 613 MEEKLEKETVKVRPLQVLLSGGNTFEV--RGDTIEVVDIDHWDCSCKGWQLTGLPCCHAI 670

Query: 471 RCIDTWGDKLDTYVHRLMTVDEYRSAYGPGMNMLPE---PMQ 509
             I   G     Y  R  T + YR  Y   ++ +P    PM+
Sbjct: 671 AVISCIGQSPYEYCSRYFTTESYRLTYSESVHPIPNVDRPME 712

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429092|ref|XP_002269076.1| PREDICTED: uncharacterized protein LOC100253276 isoform 1 [Vitis vinifera] gi|359475510|ref|XP_003631693.1| PREDICTED: uncharacterized protein LOC100253276 isoform 2 [Vitis vinifera] gi|147838852|emb|CAN72363.1| hypothetical protein VITISV_011058 [Vitis vinifera]

 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 127/515 (24%), Positives = 224/515 (43%), Gaps = 12/515 (2%)

Query: 1   MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVF 60
           +GQ F +   F+ A++  AI   F+L II +       +C+   C W+I AVK   +  F
Sbjct: 8   VGQEFADVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCATEGCPWRIRAVKLPNAPTF 67

Query: 61  VICDITPMHTC--NQHSVKLQGRTKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPI 118
            I  +   HTC  N  +   Q    WI +      + + + +   + ++I   YGI  P 
Sbjct: 68  TIRSLEGTHTCGKNAQNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQYGITIPY 127

Query: 119 WKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMF 178
            +           +     +GY  L  Y +E++  N  ++  + T        + F R+F
Sbjct: 128 KQAWRAKERGLAAIYGSSEEGYCLLPAYCEEIKRANPGSVAEVFTSGAD----NRFQRLF 183

Query: 179 VFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDS 238
           V  Y + + F   C  ++ + G ++ S Y   +L A   D +  + P+AF  V  EN +S
Sbjct: 184 VSFYASIYGFLNGCLPIVGLGGIQLKSKYLGTLLSATSFDADGGLFPLAFGVVDAENDES 243

Query: 239 WAFFLKNLNYGLRL--ERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEF 296
           W +FL  L   L +  E    L  + DG  GI +AV+   P++ +  C   L   +  EF
Sbjct: 244 WMWFLSELRKALEMNTENVPQLTFLSDGQKGIQDAVKRKFPTSSHAFCMRHLSESIGKEF 303

Query: 297 PRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWALFSMPEWVKSTE 356
               +    W A  +T    F  +MA I+ +S E   W++     +WAL    E  +   
Sbjct: 304 KNSRLVHLLWKAAYATTTIAFKEKMAEIEEVSSEAAKWIQQFPTSRWALVYF-EGTRYGH 362

Query: 357 ITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAVRQQII 416
           ++ S  E+   W+L+  +  I Q    I  K+   F+ R L    W +  + P+  ++++
Sbjct: 363 LS-SNIEEFNKWILEARELPIIQVIEQIHSKLMAEFEERRLKSNSW-FSVLAPSADKRMM 420

Query: 417 QNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELMTCTCRLWQLSGIPCPHACRCIDTW 476
           +       + V  +      V++ +  +  +N     C+CR WQL GIPC HA   + + 
Sbjct: 421 EAIGRASTYQVLRSDEVEFEVLSAE-RSDIVNIGTQCCSCRDWQLYGIPCSHAVAALLSC 479

Query: 477 GDKLDTYVHRLMTVDEYRSAYGPGMNMLPEPMQWK 511
              +  +  +  TV  YR+AY   +  +P  ++W+
Sbjct: 480 RKDVYAFTEKCFTVASYRAAYSEEIRPIPCKIEWR 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780251|emb|CAN65744.1| hypothetical protein VITISV_037761 [Vitis vinifera]

 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 130/522 (24%), Positives = 229/522 (43%), Gaps = 25/522 (4%)

Query: 1   MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVF 60
           +GQRF    EF+ AL   AI   F      N +  V+ +C    C W+I A +   + + 
Sbjct: 203 VGQRFSGVHEFREALRKYAIAHQFAFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLI 262

Query: 61  VICDITPMHTCNQHSV--KLQGRTKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPI 118
            I  +   HTC    V    Q    W+A+  +   K   + +   + N+I   YGI+   
Sbjct: 263 CIKKMNATHTCEGAVVTTGYQATRSWVASIIMDKLKVFPNYKPKDIVNDIKQEYGIQLNY 322

Query: 119 WKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMF 178
           ++      + +  L+  + + Y+QL  + +++   N  +     TK    F     HR+F
Sbjct: 323 FQAWRGKEIAKEQLQGSYKEAYSQLPFFCEKIMETNPGSFATFTTKEDSSF-----HRLF 377

Query: 179 VFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDS 238
           V  + + + F+  CR LL +D   + S Y+  +L A   DG+D V P+AF  V  E  D+
Sbjct: 378 VSFHASLYGFQQGCRPLLFLDSISLKSKYQGTLLAATAADGDDGVFPVAFSVVDAETDDN 437

Query: 239 WAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVD---- 294
           W +FL  L   L   R   +  + D + G+ E++ E    + +  C   L  +++     
Sbjct: 438 WHWFLLQLKSALPTSR--PITFVADREKGLRESIAEIFQGSFHGYCLRYLTEQLLKDLKG 495

Query: 295 ----EFPRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWALFSMPE 350
               E  R+ V   F+ A  +    +F   +  I++IS+E YNWL  ++   WA  +  +
Sbjct: 496 QFSHEVKRLMVED-FYAAAYAPRPESFQRCLESIKSISLEAYNWLIQSEPMNWA-NAFFQ 553

Query: 351 WVKSTEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPA 410
             +   +  +  E    W  +  +  I Q    I  K+ E+F  R     +W+  ++TP+
Sbjct: 554 GARYNHMASNFGELFYSWASEAHELPITQMVDVIRGKIMELFFTRRTDSNQWM-TRLTPS 612

Query: 411 VRQQIIQNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELMTCTCRLWQLSGIPCPHAC 470
           + +++ + T +     V ++  N   V  R      ++ +   C+C+ WQL+G+PC HA 
Sbjct: 613 MEEKLEKETVKVRPLQVLLSGGNTFEV--RGDTIEVVDIDHWDCSCKGWQLTGLPCCHAI 670

Query: 471 RCIDTWGDKLDTYVHRLMTVDEYRSAYGPGMNMLP---EPMQ 509
             I   G     Y  R  T + YR  Y   ++ +P    PM+
Sbjct: 671 AVISCIGQSPYEYCSRYFTTESYRLTYSESVHPIPNVDRPME 712

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432189|ref|XP_002268620.1| PREDICTED: uncharacterized protein LOC100247698 [Vitis vinifera]

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 126/522 (24%), Positives = 228/522 (43%), Gaps = 40/522 (7%)

Query: 3   QRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVFVI 62
           QRF +  EF+ AL   +I  GF      N +  V+ +C +  C W+I A +   + +  I
Sbjct: 184 QRFNSFNEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRIYASRLSTTQLICI 243

Query: 63  CDITPMHTCNQHSVKLQGRTK--WIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWK 120
             +   HTC    VK   R    W+        K S + +   + ++I   YGI+    +
Sbjct: 244 KKMHTTHTCEGAIVKAGYRATRGWVGTIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQ 303

Query: 121 LEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMFVF 180
                 + R  L+  + + Y+QL  + ++++  N  +    ETK    F     HR+F+ 
Sbjct: 304 AWRAKEIAREQLQGSYKEAYSQLPFFCEKIKETNPGSFATFETKEDSSF-----HRLFIS 358

Query: 181 LYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWA 240
            +     F+  CR LL +D   ++S Y+ ++L A   DG+D V P+AF  V  E  D+W+
Sbjct: 359 FHAAISGFQQGCRPLLFLDSTPLNSKYQGMLLTATAADGDDGVFPVAFAVVDAETDDNWS 418

Query: 241 FFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEFPRVT 300
           +FL  L   +   R   +  + D   G+ +++ E   +  +  C   L  K+  +     
Sbjct: 419 WFLLELKSAVSTAR--PITFVADFQKGLKKSLAEIFDNGYHSYCLRYLTEKLNKDLKGQF 476

Query: 301 VH-------SPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKW--ALFSMPEW 351
            H       + F+ A  ++   TF      I+ IS E YNW+  ++   W  A F    +
Sbjct: 477 SHEARRFMINDFYAAAYASRLETFQRCTENIKGISPEAYNWVIQSEPDHWSNAFFGGARY 536

Query: 352 VKSTEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAV 411
              + +  +  +    W+ +  D  I Q    +  K+ E+  +R +   +W+  K+TP+ 
Sbjct: 537 ---SHMASNFGQLFYNWVSEANDLPITQMVDVLRGKMMELIYKRRVDSSQWI-TKLTPSK 592

Query: 412 RQQIIQNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELM--------TCTCRLWQLSG 463
            +++++          D ++  ++ V+   G  +E+  E +         C+C+ WQLSG
Sbjct: 593 EEKLLK----------DTSTARSLQVLLSHGSTFEVRGESIDIVDIDHWDCSCKDWQLSG 642

Query: 464 IPCPHACRCIDTWGDKLDTYVHRLMTVDEYRSAYGPGMNMLP 505
           +PC HA    +  G     Y  R  TV+ YR  Y   ++ +P
Sbjct: 643 LPCCHAIAVFEWIGRNPYDYCSRYFTVESYRLTYAESIHPVP 684

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105815|ref|XP_002313941.1| predicted protein [Populus trichocarpa] gi|222850349|gb|EEE87896.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 126/515 (24%), Positives = 222/515 (43%), Gaps = 12/515 (2%)

Query: 1   MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVF 60
           +GQ F +   F+ A++  AI   F+L II +       +C++  C W+I AVK      F
Sbjct: 8   VGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCASEGCPWRIRAVKLPNVPTF 67

Query: 61  VICDITPMHTC--NQHSVKLQGRTKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPI 118
            +  +   HTC  N  +   Q    WI +      + + + +   + ++I   YGI  P 
Sbjct: 68  TVRSLEGTHTCGRNAQNGHHQASVDWIVSFIEERLRNNTNYKPKDILHDIHQQYGITIPY 127

Query: 119 WKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMF 178
            +           +     +GY  L  Y ++++  N  ++  + T        + FHR+F
Sbjct: 128 KQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSVAEVFTTGAD----NRFHRLF 183

Query: 179 VFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDS 238
           +  + +   F   C  ++ + G ++ S Y   +L A   D +  + P+AF  V  EN +S
Sbjct: 184 ISFFGSINGFLNGCLPIVGLGGIQLKSKYLGTLLSATSFDADGGLFPLAFGVVDVENDES 243

Query: 239 WAFFLKNLNYGLRL--ERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEF 296
           W +FL  L   L +  E    L  + DG  GI +AV    PS+ +  C   L   +  EF
Sbjct: 244 WMWFLSELQKALEMNTENMPRLTFLCDGQKGIVDAVRRKFPSSSHAFCLRHLSESIGKEF 303

Query: 297 PRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWALFSMPEWVKSTE 356
               +    W A  +T    F  +M  I  +S     WL+     +WAL    E  +   
Sbjct: 304 KNSRLVHLLWKAAYATTTIHFKEKMLEISEVSSAAAKWLQQFPPSRWALVYF-EGTRYGH 362

Query: 357 ITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAVRQQII 416
           ++ S  ++   W+L+  +  I Q    I  K+   FQ R +    W +  + P+  +++I
Sbjct: 363 LS-SNIDEFNRWILEARELPIIQVIERIHSKLMAEFQDRQMKSNSW-FSVLAPSAEKRMI 420

Query: 417 QNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELMTCTCRLWQLSGIPCPHACRCIDTW 476
           +       + V  +      V++ D  +  +N    +C+CR WQL GIPC HA   + + 
Sbjct: 421 EAINHASAYQVLRSDEVEFEVLSAD-RSDIVNIGTHSCSCRGWQLYGIPCSHAVAALVSC 479

Query: 477 GDKLDTYVHRLMTVDEYRSAYGPGMNMLPEPMQWK 511
              +  +  +  TV  YR AY   ++ +PE ++W+
Sbjct: 480 RKDVYAFTEKCFTVAGYREAYAETIHPIPERIEWR 514

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865779|emb|CAN81145.1| hypothetical protein VITISV_020810 [Vitis vinifera]

 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/522 (24%), Positives = 227/522 (43%), Gaps = 40/522 (7%)

Query: 3   QRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVFVI 62
           QRF +  EF+ AL   +I  GF      N +  V+ +C +  C W+I A +   + +  I
Sbjct: 202 QRFNSFNEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRIYASRLSTTQLICI 261

Query: 63  CDITPMHTCNQHSVKLQGRTK--WIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWK 120
             +   HTC    VK   R    W+        K S + +   + ++I   YGI+    +
Sbjct: 262 KKMHTTHTCEGAIVKAGYRATRGWVGTIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQ 321

Query: 121 LEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMFVF 180
                 + R  L+  + + Y+QL  + ++++  N  +    ETK    F     HR+F+ 
Sbjct: 322 AWRAKEIAREQLQGSYKEAYSQLPFFCEKIKETNPGSFATFETKEDSSF-----HRLFIS 376

Query: 181 LYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWA 240
            +     F+  CR LL +D   ++S Y+ ++L A   DG+D V P+AF  V  E  D+W+
Sbjct: 377 FHAAISGFQQGCRPLLFLDSTPLNSKYQGMLLTATAADGDDGVFPVAFAVVDAETDDNWS 436

Query: 241 FFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEFPRVT 300
           +FL  L   +   R   +  + D   G+ +++ E   +  +  C   L  K+  +     
Sbjct: 437 WFLLELKSAVSTAR--PITFVADFQKGLKKSLAEIFDNGYHSYCLRYLTEKLNKDLKGQF 494

Query: 301 VHSP-------FWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKW--ALFSMPEW 351
            H         F+ A  ++   TF      I+ IS E YNW+  ++   W  A F    +
Sbjct: 495 SHEARRFMINDFYAAAYASRLETFQRCTENIKGISPEAYNWVIQSEPDHWSNAFFGGARY 554

Query: 352 VKSTEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAV 411
              + +  +  +    W+ +  D  I Q    +  K+ E+  +R +   +W+  K+TP+ 
Sbjct: 555 ---SHMASNFGQLFYNWVSEANDLPITQMVDVLRGKMMELIYKRRVDSSQWI-TKLTPSK 610

Query: 412 RQQIIQNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELM--------TCTCRLWQLSG 463
            +++++          D ++  ++ V+   G  +E+  E +         C+C+ WQLSG
Sbjct: 611 EEKLLK----------DTSTARSLQVLLSHGSTFEVRGESIDIVDIDHWDCSCKDWQLSG 660

Query: 464 IPCPHACRCIDTWGDKLDTYVHRLMTVDEYRSAYGPGMNMLP 505
           +PC HA    +  G     Y  R  TV+ YR  Y   ++ +P
Sbjct: 661 LPCCHAIAVFEWIGRNPYDYCSRYFTVESYRLTYAESIHPVP 702

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485027|ref|XP_004157051.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101228329 [Cucumis sativus]

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 222/514 (43%), Gaps = 24/514 (4%)

Query: 3   QRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVFVI 62
           QRF +  EF+ AL   +I  GF      N +  V+ +C    C W+I A +   + +  I
Sbjct: 282 QRFNSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKYQGCPWRIYASRLSTTQLICI 341

Query: 63  CDITPMHTCNQHSVKLQGRTK--WIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWK 120
             +   H+C   + K   R    W+        K S + +   + ++I   YGI+    +
Sbjct: 342 KKMNTHHSCEGAAAKAGYRATRGWVGNIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQ 401

Query: 121 LEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMFVF 180
                 + R  L+  + + Y QL  + ++++  N  ++    TK    F     HR+FV 
Sbjct: 402 AWRAKEIAREQLQGSYKEAYNQLPYFCEKIKETNPGSVASFTTKDDSSF-----HRLFVS 456

Query: 181 LYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWA 240
            + +   F+  CR LL +D   ++S Y+   L A   DG DA+ P AF  V  E  ++W 
Sbjct: 457 FHASISGFQQGCRPLLFLDSTPLNSKYQGFFLXATAVDGEDAIFPAAFAVVDAETEENWH 516

Query: 241 FFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEFPRVT 300
           +FL  L   ++  R E +  + D  NG+++++ E    + +  C   L  K+ ++     
Sbjct: 517 WFLLELKSAVK--RSEQITFVADFQNGLNKSLGEIFDKSYHSYCLRHLAEKLNNDLKGQF 574

Query: 301 VH-------SPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKW--ALFSMPEW 351
            H       + F+ A  +T    F      I+ IS + YNW+  ++   W  A F    +
Sbjct: 575 SHEARRFMINDFYAAALATKLEDFQRCAESIKGISPDAYNWIIQSEPEHWANAFFGGARY 634

Query: 352 VKSTEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAV 411
                IT +  +Q    + +  +  I Q    +  K+ E    R +   +WV  K+TP  
Sbjct: 635 ---NHITSNFGQQFYSSISEAHELPITQMIDVLRGKMMETIYSRRVESDQWV-TKLTPTN 690

Query: 412 RQQIIQNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELMTCTCRLWQLSGIPCPHACR 471
            +++ +       + V ++  N   V  R    Y ++ +   C+C+ WQL+G+PC HA  
Sbjct: 691 EEKLQKEISIARSFQVSLSHGNIFEV--RGESVYSVDVDNWDCSCKAWQLTGLPCCHAIA 748

Query: 472 CIDTWGDKLDTYVHRLMTVDEYRSAYGPGMNMLP 505
            I+  G     Y  R  TV+ YR  Y   ++ +P
Sbjct: 749 VIECIGRSPYDYCPRYFTVESYRLTYAESIHPIP 782

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479587|ref|XP_003632297.1| PREDICTED: uncharacterized protein LOC100261309 [Vitis vinifera]

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 130/515 (25%), Positives = 215/515 (41%), Gaps = 11/515 (2%)

Query: 1   MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVF 60
           +GQ F +    + AL   AI   F++  + +  T  + +C++  C W+I   K      F
Sbjct: 179 VGQEFSDVQSCRRALRDTAIALHFEIQTVKSDKTRFTAKCASDGCPWRIHCAKLPGVPTF 238

Query: 61  VICDITPMHTCN--QHSVKLQGRTKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPI 118
            I  I   HTC    H    Q   +W+A+      K++ H +  ++  EI   +GI    
Sbjct: 239 TIRTIHESHTCGGITHLGHQQASVQWVASSVEQSLKENPHYKPKEILEEIHRVHGITLSY 298

Query: 119 WKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMF 178
            +       +   +R    +GY  L QY  ++   N  +I ++          + FHR+F
Sbjct: 299 KQAWRGKERIMAAVRGSFEEGYRLLPQYCDQIRRTNPESIALVYANPMD----NSFHRLF 354

Query: 179 VFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDS 238
           V    + + F   CR L+ +D   + S Y   +L A   DG+ A+ P+AF  V EEN D+
Sbjct: 355 VSFQASIYGFLNACRPLIGLDRTLLKSKYLGTLLFATGFDGDGALFPLAFGVVDEENDDN 414

Query: 239 WAFFLKNLNYGLRL--ERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEF 296
           W +FL  L+  L +  E    L I+ D    I E VE   P+A +  C   L      EF
Sbjct: 415 WMWFLSELHNLLEINTENMPRLTILSDRQKVIVEGVEANFPTAFHGFCMRHLSDSFRKEF 474

Query: 297 PRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWALFSMPEWVKSTE 356
               + +  W A +      F  ++  I+ IS E   W++      WA     E  +   
Sbjct: 475 NNTLLVNLLWEAAQVLTVIEFEAKILEIEEISQEAAYWIRRIPPRLWATAYF-EGTRFGH 533

Query: 357 ITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRRYLLGWEWVYDKITPAVRQQII 416
           +T +  E L  W+L+     I Q    I R++   F  R     +W    + P+  +++ 
Sbjct: 534 LTANVVESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWT-SILVPSAERRVS 592

Query: 417 QNTFEGEGWTVDVTSRNAIAVVTRDGLAYEINRELMTCTCRLWQLSGIPCPHACRCIDTW 476
           +       + V   +     V++ +G    ++     C CR WQL G+PC HA   + + 
Sbjct: 593 EALERARTYQVLRANEAEFEVISHEGTNI-VDIRNRCCLCRGWQLHGLPCAHAVAALLSC 651

Query: 477 GDKLDTYVHRLMTVDEYRSAYGPGMNMLPEPMQWK 511
              +  Y     TV  YR AY   ++ +P+   WK
Sbjct: 652 RQNVHRYTESCFTVATYRKAYSQTIHPIPDKTLWK 686

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	516
TAIR|locus:2197122	785	AT1G49920 "AT1G49920" [Arabido	0.649	0.426	0.238	3.9e-13
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.930	0.667	0.211	1.5e-11
TAIR|locus:1006230722	750	AT1G64255 [Arabidopsis thalian	0.947	0.652	0.212	2.5e-09

TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 3.9e-13, P = 3.9e-13
 Identities = 87/365 (23%), Positives = 155/365 (42%)

Query:     1 MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSC-ECSNLHCDWKITAVKEHRSNV 59
             +G  FK+  E K A++  +I+   K C++  T   V   EC   HC W I A +     +
Sbjct:   182 VGLCFKDLAEMKKAVDWCSIKRRQK-CLLRETEKDVYVVECERWHCKWSICASRREEDGL 240

Query:    60 FVICDITPMHTCN-QHSVKLQGRT-KWIAAKFLHIWKQSEHREVDKLRNE---IATTYGI 114
             F I + +  H C  +H          +   + + +       E+DK   +    A    +
Sbjct:   241 FEITECSGPHDCYPEHLNDFDAECIPFQIERVVRVQPTLSTAELDKWWEKKFGFALDQVV 300

Query:   115 K-CPIWKLE--AVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTA 171
             + C    +E   V  + RF+   D    + +L+   + M +++S N ++++ +     T 
Sbjct:   301 EHCSEGLVEDAKVKAIKRFF--GDWDQSF-RLIP--KLMSVLHSSNGLLVDWQ-YDSLTH 354

Query:   172 DIFHRMFVFLYDTAFVFKTR----CRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIA 227
             D  H  F  L+  AF    +    CR L+ VD   +   YK  +++A   D  +   P+A
Sbjct:   355 DPEHASFRGLF-WAFSQSIQGFQHCRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLA 413

Query:   228 FCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEE-----FLPSAVYR 282
             F    E ++DSW +FL  +    ++ + +G+C++   D  I   + E       P A +R
Sbjct:   414 FAVTKEVSVDSWRWFLTRIRE--KVTQRQGICLISSPDPDILAVINEPGSQWKEPWAYHR 471

Query:   283 QCCFSLYTKMVDEFPRVTVHSPFW--GACRSTDGNTFTNQMAVIQTISVECYNWLKDTDW 340
              C + L +K+    P    +  F    A  S+    F + M  I+  + E + WL     
Sbjct:   472 FCLYHLCSKLCSVSPGFDYNMHFLVDEAGSSSQKEEFDSYMKEIKERNPEAWKWLDQFPP 531

Query:   341 HKWAL 345
             H+WAL
Sbjct:   532 HQWAL 536

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 115/543 (21%), Positives = 217/543 (39%)

Query:     1 MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTT-CVSCECSNLHCDWKITAVKEHRSNV 59
             +G  FK+  E K A++   IR   + CI+  T     + EC    C W + A +     +
Sbjct:   187 LGLCFKDRDELKKAVDWWCIRRR-RNCIVRETEKEMYTFECVRWKCKWSLRAARMEEHGL 245

Query:    60 FVICDITPMHTCNQHSVKLQGRTKWIAAKFLHIWKQSEHREVDKLRN--EIATTYGI--- 114
               I   T  HTC+ H       +++ A +   + +      + +L+   +  T Y +   
Sbjct:   246 VEITKYTGPHTCS-HEYPNDFESEFAADEIERVVRIQPTLSIAELKKWWKEKTGYELQTS 304

Query:   115 KCPIWKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADI- 173
             K    KLE + R+       D    +  + +    +   +S N ++++ +       D  
Sbjct:   305 KMRDGKLEVIKRVFG-----DEDQSFRVMPKL---ISAFHSSNGLLVDWQYDLFPNPDFA 356

Query:   174 -FHRMFVFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVV 232
              F  +F     +   F+  CR L+ VD   ++  Y+  +++A   D  +   P+AF    
Sbjct:   357 SFRGVFWSFSQSIEGFQ-HCRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVTK 415

Query:   233 EENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEE--FL---PSAVYRQCCFS 287
             E + DSW +F   +    ++ + + LC++      I   V E   L   P A ++ C   
Sbjct:   416 EVSTDSWRWFFTKIRE--KVTQRKDLCLISSPLRDIVAVVNEPGSLWQEPWAHHKFCLNH 473

Query:   288 LYTKMVDEFPRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWAL-- 345
             L ++ +  F    + S    A  +     F + M  I+  + E + WL     HKWAL  
Sbjct:   474 LRSQFLGVFRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKWALAH 533

Query:   346 -----FSMPEWVKSTEI---------TISATEQLRIW---LLKQLDFNIAQRYTTITRKV 388
                  + + E  +             T++ T  + +    L    D +++  Y+++ R V
Sbjct:   534 DSGLRYGIIEIDREALFAVCRGFPYCTVAMTGGVMLMFDELRSSFDKSLSSIYSSLNRGV 593

Query:   389 AEIFQRRYLLGWE-WVYDKITPAVRQQIIQNTFEGEGWTVDVTSRNAIAVVTRDGLAYEI 447
               ++   ++   E ++ D I P V  Q+ +++F+     V  +S     +V       ++
Sbjct:   594 --VYTEPFMDKLEEFMTDSI-PYVITQLERDSFK-----VSESSEKEEWIV-------QL 638

Query:   448 NRELMTCTCRLWQLSGIPCPHACRCIDTWGDKLDTYVHRLMTVDEYRSAYGPGMNMLPEP 507
             N  + TCTCR +Q    PC HA    +        YV    TV++Y   Y    + +P+ 
Sbjct:   639 N--VSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPDV 696

Query:   508 MQW 510
               W
Sbjct:   697 AAW 699

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 114/536 (21%), Positives = 212/536 (39%)

Query:     1 MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSC-ECSNLHCDWKITAVKEHRSNV 59
             +G  FK+  E K A++  +++   K C++  T       EC    C W + A +  +  +
Sbjct:   194 VGLCFKDGDELKKAVDWCSLKAQQK-CVVRETAKDEYIFECIRWKCKWSLGAARMKKHGL 252

Query:    60 FVICDITPMHTCNQ---HSVKLQGRTKWI--AAKFLHIWKQSEHRE--VDKLRNEIATTY 112
               I   T  HTC+       K +  T  I  A +++     SE ++    K+  E+ T+ 
Sbjct:   253 VEIIKYTGPHTCHPIVPEDFKSEFETDEIERAVRYMPTQTISELKKWWKKKIGYELETS- 311

Query:   113 GIKCPIWKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTAD 172
              ++  + K +A+ R+   W ++   + + +L      M  + S N ++++ K       +
Sbjct:   312 DVR--LAKEKAIKRVFGDWDQSF--EDFPKL------MSALCSSNGLLVDWKYDLFPNPN 361

Query:   173 IFHRMFVF-LYDTAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEV 231
                   VF  +  +      CR L+ VD   ++  Y+  +++A   D  +   P+AF   
Sbjct:   362 FASFCGVFWAFPQSIEGFQHCRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAVT 421

Query:   232 VEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEF-----LPSAVYRQCCF 286
              E + D W +FL  +    ++ + +GLC++      I   V E       P A +R    
Sbjct:   422 KEVSTDIWRWFLTGIRE--KVTQRKGLCLISSPHPDIIAVVNESGSQWQEPWAYHRFSLN 479

Query:   287 SLYTKMVDEFPRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKDTDWHKWAL- 345
               Y++    FP   + +    A  ++  + F + M  I+  + E   WL     ++WAL 
Sbjct:   480 HFYSQFSRVFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWALA 539

Query:   346 ------FSMPEW-VKSTEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQ-RRYL 397
                   + + E   K+     +A EQ        +  ++   +  +  K  + F   R  
Sbjct:   540 HDNGRRYGIMEINTKALFAVCNAFEQAG----HVVTGSVLLLFDELRSKFDKSFSCSRSS 595

Query:   398 LGWEWVYDKITPAV-RQQIIQNTFEGEGWTVDVTSRNAIAVVTR-DGLAYEINRELMTCT 455
             L    VY +  P + + +  + TF    + V     NA  V T  D     +     +CT
Sbjct:   596 LNCGDVYTE--PVMDKLEEFRTTFVTYSYIVTPLDNNAFQVATALDKGECIVQLSDCSCT 653

Query:   456 CRLWQLSGIPCPHACR-CIDTWGDKLDTYVHRLMTVDEYRSAYGPGMNMLPEPMQW 510
             C  +Q    PC HA   C     + L  YV    T++  +  Y    + +PE   W
Sbjct:   654 CGDFQRYKFPCLHALAVCKKLKFNPLQ-YVDDCYTLERLKRTYATIFSHVPEMSAW 708


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.452    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      516       516   0.00088  119 3  11 22  0.46    33
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  629 (67 KB)
  Total size of DFA:  381 KB (2183 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  42.54u 0.12s 42.66t   Elapsed:  00:00:02
  Total cpu time:  42.54u 0.12s 42.66t   Elapsed:  00:00:02
  Start:  Fri May 10 02:33:46 2013   End:  Fri May 10 02:33:48 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	516
pfam10551	88	pfam10551, MULE, MULE transposase domain	2e-10
pfam03108	67	pfam03108, DBD_Tnp_Mut, MuDR family transposase	1e-07
smart00575	28	smart00575, ZnF_PMZ, plant mutator transposase zin	1e-05

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 208 KSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNG 267
            +    AV  D +    P+AF  V +E+ +SW +FL+ L   L       L I+ DGD G
Sbjct: 5   TNKYKGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALGGRP--PLTIISDGDKG 62

Query: 268 IDEAVEEFLPSAVYRQC 284
           + +A++E  P+A +R C
Sbjct: 63  LKKAIKEVFPNARHRLC 79

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|190526 pfam03108, DBD_Tnp_Mut, MuDR family transposase

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 2  GQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVFV 61
          GQ FK+  EFK A+   AI++ F+  +  +  T    +C +  C W++ A K   S+ F 
Sbjct: 7  GQVFKSKEEFKKAVRKYAIKNRFEFKVKKSDKTRYRAKCKDEGCPWRVRASKLKDSDTFQ 66

Query: 62 I 62
          I
Sbjct: 67 I 67

This region is found in plant proteins that are presumed to be the transposases for Mutator transposable elements. These transposons contain two ORFs. The molecular function of this region is unknown. Length = 67

>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 13/17 (76%), Positives = 15/17 (88%)

Query: 453 TCTCRLWQLSGIPCPHA 469
           TC+CR +QLSGIPC HA
Sbjct: 2   TCSCRKFQLSGIPCRHA 18

Length = 28

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	516
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.87
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.86
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.63
PF03108	67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	99.62
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	99.05
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	99.02
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	98.9
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.21
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	95.91
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	95.42
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	95.26
PF13610	140	DDE_Tnp_IS240: DDE domain	94.99
PF04684	496	BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact	94.2
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	94.0
PHA02517	277	putative transposase OrfB; Reviewed	92.84
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	92.82
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	92.32
PF03050	271	DDE_Tnp_IS66: Transposase IS66 family ; InterPro:	91.45
PRK14702	262	insertion element IS2 transposase InsD; Provisiona	91.29
PRK09409	301	IS2 transposase TnpB; Reviewed	90.19
COG3316	215	Transposase and inactivated derivatives [DNA repli	85.6
PF04937	153	DUF659: Protein of unknown function (DUF 659); Int	80.07

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=1.2e-73  Score=610.65  Aligned_cols=466  Identities=14%  Similarity=0.182  Sum_probs=372.3

Q ss_pred             CCceeCCHHHHHHHHHHHHHHcCceEEEEeeCC-------cEEEEEeec-------------------------------
Q 040097            1 MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTT-------TCVSCECSN-------------------------------   42 (516)
Q Consensus         1 vG~~F~s~~e~~~ai~~ya~~~gf~~~~~rs~~-------~~~~~~C~~-------------------------------   42 (516)
                      |||+|+|.+||++||+.||...||++++.++.+       ...+++|++                               
T Consensus        76 vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~~~~rR~  155 (846)
T PLN03097         76 SGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENGTGRRS  155 (846)
T ss_pred             CCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCccccccccc
Confidence            799999999999999999999999999875432       123566654                               


Q ss_pred             ---CCCccEEEEEEccCcceEEEEecCCCceecccCccc--cchhHHHHHHHHHHhhcCCccCHHHHHHHHHHHhCCcch
Q 040097           43 ---LHCDWKITAVKEHRSNVFVICDITPMHTCNQHSVKL--QGRTKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCP  117 (516)
Q Consensus        43 ---~gCp~rv~~~~~~~~~~~~V~~~~~~Hnc~~~~~~~--~~s~~~l~~~~~~~i~~~~~~~~~~i~~~l~~~~g~~~s  117 (516)
                         +|||+++++++. ..+.|.|+.+..+|||++.+...  ..+++.+.. +...+....++..      ++...   .+
T Consensus       156 ~tRtGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p~~~~~~~~r~~~~~-~~~~~~~~~~v~~------~~~d~---~~  224 (846)
T PLN03097        156 CAKTDCKASMHVKRR-PDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAA-MARQFAEYKNVVG------LKNDS---KS  224 (846)
T ss_pred             ccCCCCceEEEEEEc-CCCeEEEEEEecCCCCCCCCccccchhhhhhHHH-HHhhhhccccccc------cchhh---cc
Confidence               479999999875 55789999999999999965322  111111111 0000000000000      00000   00


Q ss_pred             hhhhHhhhHHHHHHhhcCChhHHHHHHHHHHHHHhhCCCcEEEEEecccccccccceeeEeeeccchHHHHhhcCceEEE
Q 040097          118 IWKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMFVFLYDTAFVFKTRCRMLLT  197 (516)
Q Consensus       118 ~~r~k~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~~npg~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~vi~  197 (516)
                      .++.++.    +    .-...+.+.|++|+++++++||+|+|.+++|+     +++++++||+++.++..|.. |+|||.
T Consensus       225 ~~~~~r~----~----~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe-----~~~l~niFWaD~~sr~~Y~~-FGDvV~  290 (846)
T PLN03097        225 SFDKGRN----L----GLEAGDTKILLDFFTQMQNMNSNFFYAVDLGE-----DQRLKNLFWVDAKSRHDYGN-FSDVVS  290 (846)
T ss_pred             hhhHHHh----h----hcccchHHHHHHHHHHHHhhCCCceEEEEEcc-----CCCeeeEEeccHHHHHHHHh-cCCEEE
Confidence            1111111    1    11234568899999999999999999999999     99999999999999999997 999999


Q ss_pred             EeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHHHHHhhhCC
Q 040097          198 VDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLP  277 (516)
Q Consensus       198 ~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~Ai~~vfP  277 (516)
                      +|+||++|+|++||..++|+|+|+++++|||||+.+|+.|+|.|+|++|+++|++..  |.+||||++.+|.+||.+|||
T Consensus       291 fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~--P~tIiTDqd~am~~AI~~VfP  368 (846)
T PLN03097        291 FDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQA--PKVIITDQDKAMKSVISEVFP  368 (846)
T ss_pred             EeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCC--CceEEecCCHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999999999999988  999999999999999999999


Q ss_pred             CCcccccHHHHHHHHhhhCCC-----CCChhhHhHhhh-ccchHHHHHHHHHH-HhhCHHHHHHhhcC--CCcccccccC
Q 040097          278 SAVYRQCCFSLYTKMVDEFPR-----VTVHSPFWGACR-STDGNTFTNQMAVI-QTISVECYNWLKDT--DWHKWALFSM  348 (516)
Q Consensus       278 ~a~~~~C~~Hi~~n~~~~~~~-----~~~~~~~~~~~~-~~~~~~f~~~~~~l-~~~~~~~~~~l~~~--~~~~W~~~~~  348 (516)
                      ++.|++|.|||++|+.+++..     ..+...|..+++ +.++++|+..|..| .+++.+.++||..+  .+++|+++|+
T Consensus       369 ~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~  448 (846)
T PLN03097        369 NAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYM  448 (846)
T ss_pred             CceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHh
Confidence            999999999999999998763     478889999886 56999999999998 56789999999997  8999999999


Q ss_pred             CCCccccccCCChHHHHHHHHHh--cccChHHHHHHHHHHHHHHHHHHHHhh-h---------------hcccCCccCHH
Q 040097          349 PEWVKSTEITISATEQLRIWLLK--QLDFNIAQRYTTITRKVAEIFQRRYLL-G---------------WEWVYDKITPA  410 (516)
Q Consensus       349 ~~~~~~~~~t~n~~Es~n~~lk~--~r~~pi~~~~~~~~~~~~~~~~~r~~~-~---------------~~~~~~~~tp~  410 (516)
                      ++.+..|+.||+++||+|+.|++  ....++..|++.+...+..+...-.+. .               ++..+..|||.
T Consensus       449 k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~  528 (846)
T PLN03097        449 RDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHA  528 (846)
T ss_pred             cccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHHhHHH
Confidence            99899999999999999999998  567788888888777665544322111 0               11113789999


Q ss_pred             HHHHHHHhhhhccCCeEEeec--CCc---eEEEee--CCeeEEEE----ecccccccCccccCCCCCcchhHHHhhcCC-
Q 040097          411 VRQQIIQNTFEGEGWTVDVTS--RNA---IAVVTR--DGLAYEIN----RELMTCTCRLWQLSGIPCPHACRCIDTWGD-  478 (516)
Q Consensus       411 ~~~kl~~~~~~~a~~~~~v~~--~~~---~~v~~~--~~~~~~V~----~~~~~CsC~~~~~~giPC~H~la~~~~~~~-  478 (516)
                      +|+++ |+++..+. .|.+..  .++   .|.|..  ....|.|.    ....+|+|++|+..||||+|||+|+...++ 
T Consensus       529 iF~kF-Q~El~~~~-~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~  606 (846)
T PLN03097        529 VFKKF-QVEVLGAV-ACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLS  606 (846)
T ss_pred             HHHHH-HHHHHHhh-heEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcc
Confidence            99999 99999887 666553  222   344432  24567775    457899999999999999999999999997 


Q ss_pred             -ChhhhhhhcccHHHHHh
Q 040097          479 -KLDTYVHRLMTVDEYRS  495 (516)
Q Consensus       479 -~~~~~v~~~y~~~~~~~  495 (516)
                       .|..||.++||+++-..
T Consensus       607 ~IP~~YILkRWTKdAK~~  624 (846)
T PLN03097        607 AIPSQYILKRWTKDAKSR  624 (846)
T ss_pred             cCchhhhhhhchhhhhhc
Confidence             69999999999998643

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.87  E-value=3e-22  Score=161.99  Aligned_cols=90  Identities=29%  Similarity=0.465  Sum_probs=85.9

Q ss_pred             CeeecCCCCceeEE---EEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHHHHHhhhC
Q 040097          200 GWEIDSPYKSVMLV---AVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFL  276 (516)
Q Consensus       200 ~t~~~~~y~~~l~~---~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~Ai~~vf  276 (516)
                      |||++|+| ++++.   ++|+|++|+.+|+||+++++|++++|.|||+.+++.++..   |.+||+|++.|+.+||+++|
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~~---p~~ii~D~~~~~~~Ai~~vf   76 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQK---PKVIISDFDKALINAIKEVF   76 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhccccC---ceeeeccccHHHHHHHHHHC
Confidence            79999999 98885   9999999999999999999999999999999999998873   79999999999999999999


Q ss_pred             CCCcccccHHHHHHHHh
Q 040097          277 PSAVYRQCCFSLYTKMV  293 (516)
Q Consensus       277 P~a~~~~C~~Hi~~n~~  293 (516)
                      |++.|++|.||+.+|++
T Consensus        77 P~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   77 PDARHQLCLFHILRNIK   93 (93)
T ss_pred             CCceEehhHHHHHHhhC
Confidence            99999999999999974

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.86  E-value=1.4e-22  Score=205.21  Aligned_cols=189  Identities=18%  Similarity=0.227  Sum_probs=158.7

Q ss_pred             ceEEEEeCeeecCCCC-----ceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcch
Q 040097          193 RMLLTVDGWEIDSPYK-----SVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNG  267 (516)
Q Consensus       193 ~~vi~~D~t~~~~~y~-----~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~  267 (516)
                      -++|++||+|.+.+.+     ..+++++|+|.+|+..+||+.+.+.|+.++|.-||+.|++.+...   |..|++|+++|
T Consensus       162 y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~RGl~~---~~lvv~Dg~~g  238 (381)
T PF00872_consen  162 YPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKERGLKD---ILLVVSDGHKG  238 (381)
T ss_pred             ccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhhccccc---cceeecccccc
Confidence            3789999999987754     457999999999999999999999999999999999999987765   58999999999


Q ss_pred             HHHHHhhhCCCCcccccHHHHHHHHhhhCCCC---CChhhHhHhhhccchHHHHHHHHHHH----hhCHHHHHHhhcCCC
Q 040097          268 IDEAVEEFLPSAVYRQCCFSLYTKMVDEFPRV---TVHSPFWGACRSTDGNTFTNQMAVIQ----TISVECYNWLKDTDW  340 (516)
Q Consensus       268 l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~~~~~---~~~~~~~~~~~~~~~~~f~~~~~~l~----~~~~~~~~~l~~~~~  340 (516)
                      |.+||.++||++.++.|.+|+++|+.++++.+   .+.+.++.+..+.+.++....++++.    ..+|.+.+++.+...
T Consensus       239 l~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~~~~~~kyp~~~~~l~~~~~  318 (381)
T PF00872_consen  239 LKEAIREVFPGAKWQRCVVHLMRNVLRKVPKKDRKEVKADLKAIYQAPDKEEAREALEEFAEKWEKKYPKAAKSLEENWD  318 (381)
T ss_pred             ccccccccccchhhhhheechhhhhccccccccchhhhhhccccccccccchhhhhhhhcccccccccchhhhhhhhccc
Confidence            99999999999999999999999999998744   66777777877877777777777664    458999999999888


Q ss_pred             cccccccCCCCccccccCCChHHHHHHHHHhc----ccChHHHHHHHH
Q 040097          341 HKWALFSMPEWVKSTEITISATEQLRIWLLKQ----LDFNIAQRYTTI  384 (516)
Q Consensus       341 ~~W~~~~~~~~~~~~~~t~n~~Es~n~~lk~~----r~~pi~~~~~~~  384 (516)
                      +.|+..-||...+--+.|||.+|++|+.||+.    +.+|-.+.+..+
T Consensus       319 ~~~tf~~fP~~~~~~i~TTN~iEsln~~irrr~~~~~~Fp~~~s~lr~  366 (381)
T PF00872_consen  319 ELLTFLDFPPEHRRSIRTTNAIESLNKEIRRRTKVVGIFPNEESALRL  366 (381)
T ss_pred             cccceeeecchhccccchhhhccccccchhhhccccccCCCHHHHHHH
Confidence            88887767775666778999999999999882    345544443333

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.63  E-value=6.1e-15  Score=146.29  Aligned_cols=219  Identities=16%  Similarity=0.180  Sum_probs=166.4

Q ss_pred             CCccCHHHHHHHHHHHhCCcch---hhhhHhhhHHHHHHhhcCChhHHHHHHHHHHHHHhhCCCcEEEEEeccccccccc
Q 040097           96 SEHREVDKLRNEIATTYGIKCP---IWKLEAVDRMVRFWLRTDHPDGYAQLLQYKQEMEIVNSRNIVIIETKSQQQFTAD  172 (516)
Q Consensus        96 ~~~~~~~~i~~~l~~~~g~~~s---~~r~k~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~~npg~~~~~~~~~~~~~~~~  172 (516)
                      ..+++++++...+++.++..++   +.+--                  ..+...+.+++..-+                 
T Consensus        98 ~~gv~Tr~i~~~~~~~~~~~~s~~~iS~~~------------------~~~~e~v~~~~~r~l-----------------  142 (379)
T COG3328          98 AKGVTTREIEALLEELYGHKVSPSVISVVT------------------DRLDEKVKAWQNRPL-----------------  142 (379)
T ss_pred             HcCCcHHHHHHHHHHhhCcccCHHHhhhHH------------------HHHHHHHHHHHhccc-----------------
Confidence            4689999999999999887666   11111                  123344444444321                 


Q ss_pred             ceeeEeeeccchHHHHhhcCceEEEEeCeeecCC--CCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhcc
Q 040097          173 IFHRMFVFLYDTAFVFKTRCRMLLTVDGWEIDSP--YKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGL  250 (516)
Q Consensus       173 ~~~~~f~~~~~~~~~~~~~~~~vi~~D~t~~~~~--y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~  250 (516)
                                        +..+++++||+|++.+  -+..+++|+|++.+|+..++++.+...|+ ..|.-||..|+..+
T Consensus       143 ------------------~~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rg  203 (379)
T COG3328         143 ------------------GDYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRG  203 (379)
T ss_pred             ------------------cCceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhcc
Confidence                              1348999999999988  45679999999999999999999999999 99999999999986


Q ss_pred             CCCCCCcEEEEcCCcchHHHHHhhhCCCCcccccHHHHHHHHhhhCCCC---CChhhHhHhhhccchHHHHHHHHH----
Q 040097          251 RLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEFPRV---TVHSPFWGACRSTDGNTFTNQMAV----  323 (516)
Q Consensus       251 ~~~~~~~~~iitD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~~~~~---~~~~~~~~~~~~~~~~~f~~~~~~----  323 (516)
                      -...   ..+++|+.+|+.+||..+||.+.++.|..|+.+|+.++.+.+   .....+..+..+.+.++....+..    
T Consensus       204 l~~v---~l~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~  280 (379)
T COG3328         204 LSDV---LLVVVDGLKGLPEAISAVFPQAAVQRCIVHLVRNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSEL  280 (379)
T ss_pred             ccce---eEEecchhhhhHHHHHHhccHhhhhhhhhHHHhhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHh
Confidence            6654   677779999999999999999999999999999999988755   333344444444554444444444    


Q ss_pred             HHhhCHHHHHHhhcCCCcccccccCCCCccccccCCChHHHHHHHHHh
Q 040097          324 IQTISVECYNWLKDTDWHKWALFSMPEWVKSTEITISATEQLRIWLLK  371 (516)
Q Consensus       324 l~~~~~~~~~~l~~~~~~~W~~~~~~~~~~~~~~t~n~~Es~n~~lk~  371 (516)
                      +....|....++.+...+.|...-|+...+--+.|||..|++|+.++.
T Consensus       281 w~~~yP~i~~~~~~~~~~~~~F~~fp~~~r~~i~ttN~IE~~n~~ir~  328 (379)
T COG3328         281 WGKRYPAILKSWRNALEELLPFFAFPSEIRKIIYTTNAIESLNKLIRR  328 (379)
T ss_pred             hhhhcchHHHHHHHHHHHhcccccCcHHHHhHhhcchHHHHHHHHHHH
Confidence            455678888888887777776666665344567899999999998775

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]

Probab=99.62  E-value=1.9e-15  Score=113.50  Aligned_cols=62  Identities=32%  Similarity=0.661  Sum_probs=60.4

Q ss_pred             CCceeCCHHHHHHHHHHHHHHcCceEEEEeeCCcEEEEEeecCCCccEEEEEEccCcceEEE
Q 040097            1 MGQRFKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSNLHCDWKITAVKEHRSNVFVI   62 (516)
Q Consensus         1 vG~~F~s~~e~~~ai~~ya~~~gf~~~~~rs~~~~~~~~C~~~gCp~rv~~~~~~~~~~~~V   62 (516)
                      +||+|+|++|+++||..||+.++|++++.+|++++++++|...||||+|+|++.++++.|+|
T Consensus         6 ~G~~F~~~~e~k~av~~yai~~~~~~~v~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I   67 (67)
T PF03108_consen    6 VGQTFPSKEEFKEAVREYAIKNGFEFKVKKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI   67 (67)
T ss_pred             cCCEECCHHHHHHHHHHHHHhcCcEEEEeccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence            69999999999999999999999999999999999999999999999999999999999986

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=99.05  E-value=8.8e-10  Score=87.80  Aligned_cols=69  Identities=17%  Similarity=0.307  Sum_probs=65.5

Q ss_pred             eCCHHHHHHHHHHHHHHcCceEEEEeeCCcEEEEEeec------------------------------------------
Q 040097            5 FKNDVEFKTALEVNAIRDGFKLCIIHNTTTCVSCECSN------------------------------------------   42 (516)
Q Consensus         5 F~s~~e~~~ai~~ya~~~gf~~~~~rs~~~~~~~~C~~------------------------------------------   42 (516)
                      |.|++|++.+|+.++...|+.+.+.|||...+.|.|..                                          
T Consensus         1 F~~k~~ikpwlq~~~~~~Gi~iVIerSd~~ki~FkCk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~t~srk   80 (111)
T PF08731_consen    1 FDDKDEIKPWLQKIFYPQGIGIVIERSDKKKIVFKCKNGKRYRHKKKKKGQAQAQQKESTSGNKNKSSKKKKKKRTKSRK   80 (111)
T ss_pred             CCchHHHHHHHHHHhhhcCceEEEEecCCceEEEEEecCCCcccccccccccccccccccccccccccccccCCcccccc
Confidence            89999999999999999999999999999999999973                                          


Q ss_pred             CCCccEEEEEEccCcceEEEEecCCCceecc
Q 040097           43 LHCDWKITAVKEHRSNVFVICDITPMHTCNQ   73 (516)
Q Consensus        43 ~gCp~rv~~~~~~~~~~~~V~~~~~~Hnc~~   73 (516)
                      .+|||+|+|......+.|.|..+++.|||++
T Consensus        81 ~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l  111 (111)
T PF08731_consen   81 NTCPFRIRANYSKKNKKWTLVVVNNEHNHPL  111 (111)
T ss_pred             cCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence            3799999999999999999999999999985

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=99.02  E-value=1e-10  Score=70.56  Aligned_cols=27  Identities=52%  Similarity=0.891  Sum_probs=25.1

Q ss_pred             cccccCccccCCCCCcchhHHHhhcCC
Q 040097          452 MTCTCRLWQLSGIPCPHACRCIDTWGD  478 (516)
Q Consensus       452 ~~CsC~~~~~~giPC~H~la~~~~~~~  478 (516)
                      .+|||++|+..||||+|+|+|+...++
T Consensus         1 ~~CsC~~~~~~gipC~H~i~v~~~~~~   27 (28)
T smart00575        1 KTCSCRKFQLSGIPCRHALAAAIHIGL   27 (28)
T ss_pred             CcccCCCcccCCccHHHHHHHHHHhCC
Confidence            479999999999999999999998875

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=98.90  E-value=2.7e-09  Score=85.50  Aligned_cols=62  Identities=16%  Similarity=0.232  Sum_probs=54.6

Q ss_pred             HHHHHHHHHcCceEEEEeeCC-------cEEEEEeec----------------------CCCccEEEEEEccCcceEEEE
Q 040097           13 TALEVNAIRDGFKLCIIHNTT-------TCVSCECSN----------------------LHCDWKITAVKEHRSNVFVIC   63 (516)
Q Consensus        13 ~ai~~ya~~~gf~~~~~rs~~-------~~~~~~C~~----------------------~gCp~rv~~~~~~~~~~~~V~   63 (516)
                      +||+.||..+||++++.+|.+       .++.++|++                      +||||+|.+.+.. ++.|.|+
T Consensus         1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~   79 (91)
T PF03101_consen    1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSRGGKYKSKKKNEEKRRRNRPSKKTGCKARINVKRRK-DGKWRVT   79 (91)
T ss_pred             CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECCcccccccccccccccccccccccCCCEEEEEEEcc-CCEEEEE
Confidence            489999999999999987654       378899985                      5999999999887 9999999


Q ss_pred             ecCCCceecccC
Q 040097           64 DITPMHTCNQHS   75 (516)
Q Consensus        64 ~~~~~Hnc~~~~   75 (516)
                      .+..+|||++.+
T Consensus        80 ~~~~~HNH~L~P   91 (91)
T PF03101_consen   80 SFVLEHNHPLCP   91 (91)
T ss_pred             ECcCCcCCCCCC
Confidence            999999999753

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.21  E-value=9.4e-07  Score=58.63  Aligned_cols=31  Identities=26%  Similarity=0.650  Sum_probs=27.7

Q ss_pred             EEecccccccCccccCCCCCcchhHHHhhcC
Q 040097          447 INRELMTCTCRLWQLSGIPCPHACRCIDTWG  477 (516)
Q Consensus       447 V~~~~~~CsC~~~~~~giPC~H~la~~~~~~  477 (516)
                      +.+...+|||+.|+..|.||+|++|++...+
T Consensus        10 ~~~~~~~CsC~~~~~~~~~CkHi~av~~~~~   40 (40)
T PF04434_consen   10 VSIEQASCSCPYFQFRGGPCKHIVAVLLALN   40 (40)
T ss_pred             ccccccEeeCCCccccCCcchhHHHHHHhhC
Confidence            5677899999999999999999999987653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=95.91  E-value=0.017  Score=55.44  Aligned_cols=93  Identities=16%  Similarity=0.164  Sum_probs=69.4

Q ss_pred             EEEeCeeecCCCCceeEEEEEecC--CCCeEEEEEEEeeccccccHHHHHHHH-HhccCCCCCCcEEEEcCCcchHHHHH
Q 040097          196 LTVDGWEIDSPYKSVMLVAVCRDG--NDAVLPIAFCEVVEENLDSWAFFLKNL-NYGLRLERGEGLCIMGDGDNGIDEAV  272 (516)
Q Consensus       196 i~~D~t~~~~~y~~~l~~~~g~d~--~~~~~~la~a~~~~E~~~~~~w~l~~l-~~~~~~~~~~~~~iitD~~~~l~~Ai  272 (516)
                      |+||-+.....+..  ++.+.+|.  +++..   +.++++-+.++..-||..+ -......   ..+|++|...+..+|+
T Consensus         1 lgiDE~~~~~g~~~--y~t~~~d~~~~~~~i---l~i~~~r~~~~l~~~~~~~~~~~~~~~---v~~V~~Dm~~~y~~~~   72 (249)
T PF01610_consen    1 LGIDEFAFRKGHRS--YVTVVVDLDTDTGRI---LDILPGRDKETLKDFFRSLYPEEERKN---VKVVSMDMSPPYRSAI   72 (249)
T ss_pred             CeEeeeeeecCCcc--eeEEEEECccCCceE---EEEcCCccHHHHHHHHHHhCccccccc---eEEEEcCCCccccccc
Confidence            46777766554443  44445555  44332   4588899999998888877 4443332   5899999999999999


Q ss_pred             hhhCCCCcccccHHHHHHHHhhhC
Q 040097          273 EEFLPSAVYRQCCFSLYTKMVDEF  296 (516)
Q Consensus       273 ~~vfP~a~~~~C~~Hi~~n~~~~~  296 (516)
                      ++.||+|.+..-.||+++++.+.+
T Consensus        73 ~~~~P~A~iv~DrFHvvk~~~~al   96 (249)
T PF01610_consen   73 REYFPNAQIVADRFHVVKLANRAL   96 (249)
T ss_pred             cccccccccccccchhhhhhhhcc
Confidence            999999999999999999987643

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=95.42  E-value=0.02  Score=41.37  Aligned_cols=40  Identities=15%  Similarity=0.151  Sum_probs=33.1

Q ss_pred             CcEEEEEeecCCCccEEEEEEccCcceEEEEecCCCceec
Q 040097           33 TTCVSCECSNLHCDWKITAVKEHRSNVFVICDITPMHTCN   72 (516)
Q Consensus        33 ~~~~~~~C~~~gCp~rv~~~~~~~~~~~~V~~~~~~Hnc~   72 (516)
                      -.|..++|+..+||++-.+.+..+++...++++.++|||+
T Consensus        20 ~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen   20 YPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             CEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             eeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            3577899999999999999998878888899999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=95.26  E-value=0.21  Score=52.43  Aligned_cols=133  Identities=19%  Similarity=0.192  Sum_probs=92.2

Q ss_pred             ccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHHHHHhhhCCCCcccccHHHHHHHHhhhCC-CCCChhhHhHhhhc
Q 040097          233 EENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEFP-RVTVHSPFWGACRS  311 (516)
Q Consensus       233 ~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~~~-~~~~~~~~~~~~~~  311 (516)
                      ..+.+.|..+.+.+.+.....+.--+++.+|+...+.+++. .+|++.|.+..+|+.+.+.+.++ .+.+.+.++++.+.
T Consensus       235 ~~~~~~~~~v~~~i~~~Y~~~~~~~iiingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~~~~~~~~~~al~~  313 (470)
T PF06782_consen  235 ESAEEFWEEVLDYIYNHYDLDKTTKIIINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHDPELKEKIRKALKK  313 (470)
T ss_pred             cchHHHHHHHHHHHHHhcCcccceEEEEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence            55678899999988887765542246788999999998876 99999999999999999999886 44667767777777


Q ss_pred             cchHHHHHHHHHHHhh--CH-------HHHHHhhcCCCcccccccCCCCccccccCCChHHHHHHHHHh
Q 040097          312 TDGNTFTNQMAVIQTI--SV-------ECYNWLKDTDWHKWALFSMPEWVKSTEITISATEQLRIWLLK  371 (516)
Q Consensus       312 ~~~~~f~~~~~~l~~~--~~-------~~~~~l~~~~~~~W~~~~~~~~~~~~~~t~n~~Es~n~~lk~  371 (516)
                      ....++...++.+...  ++       ++..||.++....  ..|-.   +-|.......|+.++.+..
T Consensus       314 ~d~~~l~~~L~~~~~~~~~~~~~~~i~~~~~Yl~~n~~~i--~~y~~---~~~~~g~g~ee~~~~~~s~  377 (470)
T PF06782_consen  314 GDKKKLETVLDTAESCAKDEEERKKIRKLRKYLLNNWDGI--KPYRE---REGLRGIGAEESVSHVLSY  377 (470)
T ss_pred             cCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHCHHHh--hhhhh---ccCCCccchhhhhhhHHHH
Confidence            7788888888777543  21       3455666542211  12211   1233444557777777643

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=94.99  E-value=0.014  Score=50.50  Aligned_cols=81  Identities=20%  Similarity=0.056  Sum_probs=68.3

Q ss_pred             ceEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHHHHH
Q 040097          193 RMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAV  272 (516)
Q Consensus       193 ~~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~Ai  272 (516)
                      ++.+.+|-||.+-+-+ ..++..++|.+|+  +|++-+.+.-+..+=..||..+.+..+..   |..|+||+.++...|+
T Consensus         1 ~~~w~~DEt~iki~G~-~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~~~~---p~~ivtDk~~aY~~A~   74 (140)
T PF13610_consen    1 GDSWHVDETYIKIKGK-WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRHRGE---PRVIVTDKLPAYPAAI   74 (140)
T ss_pred             CCEEEEeeEEEEECCE-EEEEEEeeccccc--chhhhhhhhcccccceeeccccceeeccc---cceeecccCCccchhh
Confidence            3578999999986533 4566788999999  88999999999999899999888887633   7999999999999999


Q ss_pred             hhhCCCC
Q 040097          273 EEFLPSA  279 (516)
Q Consensus       273 ~~vfP~a  279 (516)
                      ++++|.-
T Consensus        75 ~~l~~~~   81 (140)
T PF13610_consen   75 KELNPEG   81 (140)
T ss_pred             hhccccc
Confidence            9999974

>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication

Probab=94.20  E-value=0.093  Score=52.84  Aligned_cols=54  Identities=9%  Similarity=0.190  Sum_probs=49.2

Q ss_pred             CceeCCHHHHHHHHHHHHHHcCceEEEEeeCC-cEEEEEeecCCCccEEEEEEcc
Q 040097            2 GQRFKNDVEFKTALEVNAIRDGFKLCIIHNTT-TCVSCECSNLHCDWKITAVKEH   55 (516)
Q Consensus         2 G~~F~s~~e~~~ai~~ya~~~gf~~~~~rs~~-~~~~~~C~~~gCp~rv~~~~~~   55 (516)
                      |..|++.++-+.+|+.|-++.++.|..+.|-+ ++++|-|....|||+|.++..+
T Consensus        25 ~~~f~tl~~wy~v~ndyefq~rcpiilknsh~nkhftfachlk~c~fkillsy~g   79 (496)
T PF04684_consen   25 ARKFPTLEAWYNVINDYEFQSRCPIILKNSHRNKHFTFACHLKNCPFKILLSYCG   79 (496)
T ss_pred             ccCCCcHHHHHHHHhhhhhhhcCceeecccccccceEEEeeccCCCceeeeeecc
Confidence            56799999999999999999999999998864 7899999999999999998654

ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=94.00  E-value=0.23  Score=41.20  Aligned_cols=74  Identities=14%  Similarity=-0.055  Sum_probs=54.7

Q ss_pred             ceEEEEeCeeec-CCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHH
Q 040097          193 RMLLTVDGWEID-SPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGID  269 (516)
Q Consensus       193 ~~vi~~D~t~~~-~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~  269 (516)
                      ...+.+|.+... ...++..++.+.+|..-.. .+++.+-..++.+....+|.......+...  |.+|++|+..+..
T Consensus         6 ~~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--p~~i~tD~g~~f~   80 (120)
T PF00665_consen    6 GERWQIDFTPMPIPDKGGRVYLLVFIDDYSRF-IYAFPVSSKETAEAALRALKRAIEKRGGRP--PRVIRTDNGSEFT   80 (120)
T ss_dssp             TTEEEEEEEEETGGCTT-CEEEEEEEETTTTE-EEEEEESSSSHHHHHHHHHHHHHHHHS-SE---SEEEEESCHHHH
T ss_pred             CCEEEEeeEEEecCCCCccEEEEEEEECCCCc-EEEEEeeccccccccccccccccccccccc--ceecccccccccc
Confidence            457899999666 3455688888999987665 557777777788888888887766666553  6999999998865

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>PHA02517 putative transposase OrfB; Reviewed

Probab=92.84  E-value=0.79  Score=44.59  Aligned_cols=72  Identities=14%  Similarity=-0.047  Sum_probs=47.2

Q ss_pred             ceEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchH
Q 040097          193 RMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGI  268 (516)
Q Consensus       193 ~~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l  268 (516)
                      ..++..|-||..... +..++.+.+|..... ++|+.+...++.+...-.|+......+...  +..|.||+....
T Consensus       110 n~~w~~D~t~~~~~~-g~~yl~~iiD~~sr~-i~~~~~~~~~~~~~~~~~l~~a~~~~~~~~--~~i~~sD~G~~y  181 (277)
T PHA02517        110 NQLWVADFTYVSTWQ-GWVYVAFIIDVFARR-IVGWRVSSSMDTDFVLDALEQALWARGRPG--GLIHHSDKGSQY  181 (277)
T ss_pred             CCeEEeceeEEEeCC-CCEEEEEecccCCCe-eeecccCCCCChHHHHHHHHHHHHhcCCCc--CcEeeccccccc
Confidence            368999999986543 556777777776554 677888877777765555555444433221  356778987653

>smart00774 WRKY DNA binding domain

Probab=92.82  E-value=0.13  Score=36.90  Aligned_cols=38  Identities=16%  Similarity=0.139  Sum_probs=32.2

Q ss_pred             cEEEEEeec-CCCccEEEEEEccCcceEEEEecCCCcee
Q 040097           34 TCVSCECSN-LHCDWKITAVKEHRSNVFVICDITPMHTC   71 (516)
Q Consensus        34 ~~~~~~C~~-~gCp~rv~~~~~~~~~~~~V~~~~~~Hnc   71 (516)
                      .|..++|+. .|||++=.+.+..+++...++++.++|||
T Consensus        21 pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774       21 PRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             cceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            567799998 89999988888776677777899999997

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.32  E-value=0.2  Score=36.12  Aligned_cols=46  Identities=13%  Similarity=0.247  Sum_probs=25.1

Q ss_pred             cCceEEEEeeCCcEEEEEeecC---CCccEEEEEEccCcceEEEEecCCCcee
Q 040097           22 DGFKLCIIHNTTTCVSCECSNL---HCDWKITAVKEHRSNVFVICDITPMHTC   71 (516)
Q Consensus        22 ~gf~~~~~rs~~~~~~~~C~~~---gCp~rv~~~~~~~~~~~~V~~~~~~Hnc   71 (516)
                      .|+.+...+.......+.|+.-   +|++++...  .+.+  .+.....+|||
T Consensus        14 ~Gy~y~~~~~~~~~~~WrC~~~~~~~C~a~~~~~--~~~~--~~~~~~~~HnH   62 (62)
T PF04500_consen   14 DGYRYYFNKRNDGKTYWRCSRRRSHGCRARLITD--AGDG--RVVRTNGEHNH   62 (62)
T ss_dssp             TTEEEEEEEE-SS-EEEEEGGGTTS----EEEEE----TT--EEEE-S---SS
T ss_pred             CCeEEECcCCCCCcEEEEeCCCCCCCCeEEEEEE--CCCC--EEEECCCccCC
Confidence            4778887777788899999874   899999997  2222  35555578987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition

Probab=91.45  E-value=0.15  Score=49.44  Aligned_cols=85  Identities=15%  Similarity=0.136  Sum_probs=57.8

Q ss_pred             ceEEEEeCeeec----CCC-CceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcch
Q 040097          193 RMLLTVDGWEID----SPY-KSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNG  267 (516)
Q Consensus       193 ~~vi~~D~t~~~----~~y-~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~  267 (516)
                      .+++.+|-|..+    ++. ++-+.++++-+      .+.|.+.++-+.+...-+|..       .   .-+++||+..+
T Consensus        67 ~~~~~~DET~~~vl~~~~g~~~~~Wv~~~~~------~v~f~~~~sR~~~~~~~~L~~-------~---~GilvsD~y~~  130 (271)
T PF03050_consen   67 SPVVHADETGWRVLDKGKGKKGYLWVFVSPE------VVLFFYAPSRSSKVIKEFLGD-------F---SGILVSDGYSA  130 (271)
T ss_pred             cceeccCCceEEEeccccccceEEEeeeccc------eeeeeecccccccchhhhhcc-------c---ceeeecccccc
Confidence            478889988887    443 33344444333      555666666666666555443       2   36899999887


Q ss_pred             HHHHHhhhCCCCcccccHHHHHHHHhhhCCC
Q 040097          268 IDEAVEEFLPSAVYRQCCFSLYTKMVDEFPR  298 (516)
Q Consensus       268 l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~~~~  298 (516)
                      =..     +..+.|+.|+.|+.+.+.+....
T Consensus       131 Y~~-----~~~~~hq~C~AH~~R~~~~~~~~  156 (271)
T PF03050_consen  131 YNK-----LAGITHQLCWAHLRRDFQDAAES  156 (271)
T ss_pred             ccc-----ccccccccccccccccccccccc
Confidence            544     23889999999999999876653

This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].

>PRK14702 insertion element IS2 transposase InsD; Provisional

Probab=91.29  E-value=5.4  Score=38.47  Aligned_cols=73  Identities=11%  Similarity=0.034  Sum_probs=48.9

Q ss_pred             eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeec-cccccHHHHHHH-HHhccCC-CCCCcEEEEcCCcch
Q 040097          194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVE-ENLDSWAFFLKN-LNYGLRL-ERGEGLCIMGDGDNG  267 (516)
Q Consensus       194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~-E~~~~~~w~l~~-l~~~~~~-~~~~~~~iitD~~~~  267 (516)
                      .++..|-||.....++.+++++-+|.... .++|+++... .+.+.-.-+|+. +....+. .+..|..|-||+...
T Consensus        88 ~~W~~DiT~~~~~~g~~~Yl~~viD~~sR-~ivg~~is~~~~~~~~v~~~l~~A~~~~~~~~~~~~~~iihSD~Gsq  163 (262)
T PRK14702         88 QRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSC  163 (262)
T ss_pred             CEEEeeeEEEEecCCcEEEEEEEEecccc-eeeeEEeccCcCCHHHHHHHHHHHHHHHhcccCCCCCeEEEcCCCcc
Confidence            68999999987654557888888998776 5788998874 555555555554 3333221 112368889998765

>PRK09409 IS2 transposase TnpB; Reviewed

Probab=90.19  E-value=8.7  Score=37.88  Aligned_cols=75  Identities=11%  Similarity=0.031  Sum_probs=51.1

Q ss_pred             ceEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeec-cccccHHHHHHH-HHhccCC-CCCCcEEEEcCCcchH
Q 040097          193 RMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVE-ENLDSWAFFLKN-LNYGLRL-ERGEGLCIMGDGDNGI  268 (516)
Q Consensus       193 ~~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~-E~~~~~~w~l~~-l~~~~~~-~~~~~~~iitD~~~~l  268 (516)
                      ..++..|-||....-++.+++++-+|...+ .++|+++... .+.+.-.-+|+. +....+. .+..|..|-||+...-
T Consensus       126 N~~W~tDiT~~~~~~g~~~Yl~~ViD~~sR-~ivg~~~s~~~~~~~~v~~~l~~a~~~~~~~~~~~~~~iihSDrGsqy  203 (301)
T PRK09409        126 NQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCY  203 (301)
T ss_pred             CCEEEeeeEEEEeCCCCEEEEEEEeecccc-eEEEEEeccCCCCHHHHHHHHHHHHHHHhccCCCCCCcEEecCCCccc
Confidence            368999999986655557888888998777 5889999875 566655555553 4443332 1223678899987653

>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=85.60  E-value=1.9  Score=39.71  Aligned_cols=84  Identities=18%  Similarity=0.014  Sum_probs=62.8

Q ss_pred             ceEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHHHHH
Q 040097          193 RMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAV  272 (516)
Q Consensus       193 ~~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~Ai  272 (516)
                      ++.+.+|-||.+.+-+.. +.--++|.+  ..++.+-|...-+...=.-||..+++..+    .|.+|+||+.+....|+
T Consensus        70 ~~~w~vDEt~ikv~gkw~-ylyrAid~~--g~~Ld~~L~~rRn~~aAk~Fl~kllk~~g----~p~v~vtDka~s~~~A~  142 (215)
T COG3316          70 GDSWRVDETYIKVNGKWH-YLYRAIDAD--GLTLDVWLSKRRNALAAKAFLKKLLKKHG----EPRVFVTDKAPSYTAAL  142 (215)
T ss_pred             ccceeeeeeEEeeccEee-ehhhhhccC--CCeEEEEEEcccCcHHHHHHHHHHHHhcC----CCceEEecCccchHHHH
Confidence            367889999987654333 223445665  45677888888888888888888877762    27999999999999999


Q ss_pred             hhhCCCCcccc
Q 040097          273 EEFLPSAVYRQ  283 (516)
Q Consensus       273 ~~vfP~a~~~~  283 (516)
                      .++-+.+.|+.
T Consensus       143 ~~l~~~~ehr~  153 (215)
T COG3316         143 RKLGSEVEHRT  153 (215)
T ss_pred             HhcCcchheec
Confidence            99998666653

>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function

Probab=80.07  E-value=21  Score=31.24  Aligned_cols=62  Identities=13%  Similarity=0.200  Sum_probs=46.6

Q ss_pred             cccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHHHHHh---hhCCCCcccccHHHHHHHHhhhCC
Q 040097          234 ENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVE---EFLPSAVYRQCCFSLYTKMVDEFP  297 (516)
Q Consensus       234 E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~Ai~---~vfP~a~~~~C~~Hi~~n~~~~~~  297 (516)
                      .+.+...-+|....+.+|..+  -.-||||-...+.+|-+   +-+|.....-|..|-+.-+.+.+.
T Consensus        73 ~~a~~l~~ll~~vIeeVG~~n--VvqVVTDn~~~~~~a~~~L~~k~p~ifw~~CaaH~inLmledi~  137 (153)
T PF04937_consen   73 KTAEYLFELLDEVIEEVGEEN--VVQVVTDNASNMKKAGKLLMEKYPHIFWTPCAAHCINLMLEDIG  137 (153)
T ss_pred             ccHHHHHHHHHHHHHHhhhhh--hhHHhccCchhHHHHHHHHHhcCCCEEEechHHHHHHHHHHHHh
Confidence            455666666666666666666  67899999999888844   448999999999998877765544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	516
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 47/363 (12%), Positives = 103/363 (28%), Gaps = 112/363 (30%)

Query: 67  PMHTCNQHSVKLQGRTKWIAAKFLH----IWKQSEHREVDKLRNEIATTYGIKCPIWKLE 122
           P     Q  ++L+   K +    +       K         +  ++  +Y ++C      
Sbjct: 136 PYLKLRQALLELR-PAKNV---LIDGVLGSGKTW-------VALDVCLSYKVQC------ 178

Query: 123 AVDRMVRFWL---RTDHPDGYAQLLQ---------YKQEMEIVNS--RNIVIIETKSQQQ 168
            +D  + FWL     + P+   ++LQ         +    +  ++    I  I+ + ++ 
Sbjct: 179 KMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 169 FTADIFHRMFVFLYD-----TAFVFKTRCRMLLTVDGWEIDSPYKSVMLVAVCRDGNDAV 223
             +  +    + L +         F   C++LLT       + +K V          D +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-------TRFKQVT---------DFL 281

Query: 224 LPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQ 283
                  +           L + +  L  +  + L +       +D   ++ LP    R+
Sbjct: 282 SAATTTHIS----------LDHHSMTLTPDEVKSLLL-----KYLDCRPQD-LP----RE 321

Query: 284 CC------FSLYTKMVDEFPRVTVHSPFWGACRSTDGNTFTNQMAVIQTISVECYNWLKD 337
                    S+  + + +          W            N   +   I     N L+ 
Sbjct: 322 VLTTNPRRLSIIAESIRDGL---ATWDNW---------KHVNCDKLTTIIES-SLNVLEP 368

Query: 338 TDWHK--WALFSMPEWVKSTEITISATEQLRIWLLKQLDFNIAQRYTTITRKVAEIFQRR 395
            ++ K    L   P       I +S      IW              +    V     + 
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLS-----LIW---------FDVIKSDVMVVVNKLHKY 414

Query: 396 YLL 398
            L+
Sbjct: 415 SLV 417

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	516
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	95.38
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	95.22
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	89.51
1cxq_A	162	Avian sarcoma virus integrase; mixed beta-sheet su	87.31
1c0m_A	238	Protein (integrase); HIV, X-RAY crystallography, p	86.64
3kks_A	152	Integrase, IN; beta-strands flanked by alpha-helic	85.5
3l3u_A	163	POL polyprotein; DNA integration, AIDS, integrase,	84.96
3f9k_A	210	Integrase; protein-protein complex, AIDS, DNA inte	80.93

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=95.38  E-value=0.015  Score=42.84  Aligned_cols=41  Identities=15%  Similarity=0.196  Sum_probs=36.1

Q ss_pred             cEEEEEeecCCCccEEEEEEccCcceEEEEecCCCceeccc
Q 040097           34 TCVSCECSNLHCDWKITAVKEHRSNVFVICDITPMHTCNQH   74 (516)
Q Consensus        34 ~~~~~~C~~~gCp~rv~~~~~~~~~~~~V~~~~~~Hnc~~~   74 (516)
                      .|..++|+..|||++-.+.+..+++...++++.++|||+.+
T Consensus        34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A           34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            46779999999999999999877777888899999999864

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=95.22  E-value=0.017  Score=42.65  Aligned_cols=41  Identities=10%  Similarity=0.142  Sum_probs=35.7

Q ss_pred             cEEEEEeecCCCccEEEEEEccCcceEEEEecCCCceeccc
Q 040097           34 TCVSCECSNLHCDWKITAVKEHRSNVFVICDITPMHTCNQH   74 (516)
Q Consensus        34 ~~~~~~C~~~gCp~rv~~~~~~~~~~~~V~~~~~~Hnc~~~   74 (516)
                      .|..++|+..|||++-.+.+..+++...++++.++|||+.+
T Consensus        37 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           37 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             eeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            47779999999999999999877777778899999999863

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=89.51  E-value=0.45  Score=36.21  Aligned_cols=46  Identities=15%  Similarity=0.210  Sum_probs=33.6

Q ss_pred             cCceEEEEeeCCcEEEEEeec---CCCccEEEEEEccCcceEEEEecCCCceeccc
Q 040097           22 DGFKLCIIHNTTTCVSCECSN---LHCDWKITAVKEHRSNVFVICDITPMHTCNQH   74 (516)
Q Consensus        22 ~gf~~~~~rs~~~~~~~~C~~---~gCp~rv~~~~~~~~~~~~V~~~~~~Hnc~~~   74 (516)
                      .|+.|...+....+..+.|+.   .+|++++.....   +   +. ....|||++.
T Consensus        26 ~Gy~Y~~~~~~~~~~yWrC~~~~~~kCrARi~T~~~---~---~~-~~~~HnH~p~   74 (87)
T 2rpr_A           26 ESFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQGH---R---IM-VMRSHCHQPD   74 (87)
T ss_dssp             TTEEEEEEEECSSCEEEEEGGGTTSCCCCEEEEETT---E---EE-ECSCCSSCCC
T ss_pred             CCEEEEeeecCCCcEEEEecCCCCCCCCEEEEEcCC---C---EE-CCCCcCCCCc
Confidence            477788777777788899986   589999887632   2   22 4567999864

>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A

Probab=87.31  E-value=2.8  Score=35.49  Aligned_cols=69  Identities=10%  Similarity=-0.117  Sum_probs=45.3

Q ss_pred             eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHH
Q 040097          194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGID  269 (516)
Q Consensus       194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~  269 (516)
                      .++.+|-|+.... +|..++++.+|...+. ++++.+- +++.+.-..+|+.+....+    .|..|.||+.....
T Consensus        12 ~~~~~D~~~~~~~-~g~~yl~~~iD~~Sr~-i~~~~~~-~~~~~~v~~~l~~~~~~~g----~p~~i~sDnG~~f~   80 (162)
T 1cxq_A           12 QIWQTDFTLEPRM-APRSWLAVTVDTASSA-IVVTQHG-RVTSVAAQHHWATAIAVLG----RPKAIKTDNGSCFT   80 (162)
T ss_dssp             CEEEEEEEECGGG-TTSCEEEEEEETTTCC-EEEEEES-SCCHHHHHHHHHHHHHHHC----CCSEEECCSCHHHH
T ss_pred             CEEEeeeeecccC-CCCEEEEEEEEcCCCe-EEEEECC-CccHHHHHHHHHHHHHHHC----CCeEEEeCCchhhh
Confidence            5788999887543 3456677778877654 4566665 5666655555555555443    26799999987753

>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A

Probab=86.64  E-value=2.9  Score=38.13  Aligned_cols=69  Identities=10%  Similarity=-0.131  Sum_probs=47.5

Q ss_pred             eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHH
Q 040097          194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGID  269 (516)
Q Consensus       194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~  269 (516)
                      .++.+|.|+.... ++..++++.+|.... +++++.+- +++.+.-..+|+.+....+.    |..|.||+.....
T Consensus        11 ~~w~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g~----p~~i~sDnG~~f~   79 (238)
T 1c0m_A           11 QIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAVQHHWATAIAVLGR----PKAIKTDNGSCFT   79 (238)
T ss_dssp             SEEEEEEEECGGG-CSSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHCC----CSEEEECSCHHHH
T ss_pred             CEEEEeecccccc-CCCEEEEEEEECCCC-CEEEEEcc-CCCHHHHHHHHHHHHHHhCC----CcEEEECCCCccc
Confidence            5789999987543 344666777787654 45567765 77777766667666655542    6799999987753

>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A

Probab=85.50  E-value=2.5  Score=35.04  Aligned_cols=64  Identities=17%  Similarity=0.108  Sum_probs=43.7

Q ss_pred             eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHH
Q 040097          194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGID  269 (516)
Q Consensus       194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~  269 (516)
                      .++.+|.|+..+     .++++.+|...+.. +++.+- +++.+...-+|..+....+     |..|.||+.....
T Consensus         3 ~~w~~D~t~~~~-----~y~~~~iD~~sr~~-~~~~~~-~~~~~~~~~~l~~~~~~~g-----p~~i~sDnG~~f~   66 (152)
T 3kks_A            3 HLWQMDNTHWNK-----TIIWVAVETNSGLV-EAQVIP-EETALQVALCILQLIQRYT-----VLHLHSDNGPCFT   66 (152)
T ss_dssp             CEEEEEEEEETT-----EEEEEEEETTTCCE-EEEEES-SSCHHHHHHHHHHHHHHSC-----CSEEEECSCHHHH
T ss_pred             cEEEEeeeeeCC-----EEEEEEEEcCCCcE-EEEEeC-CcCHHHHHHHHHHHHHHhC-----CcEEecCCchHhh
Confidence            578899998843     26677788776654 566554 6666666666666655554     5889999987754

>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...

Probab=84.96  E-value=2.4  Score=35.80  Aligned_cols=63  Identities=14%  Similarity=0.085  Sum_probs=43.1

Q ss_pred             eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchH
Q 040097          194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGI  268 (516)
Q Consensus       194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l  268 (516)
                      .++.+|.|+..++     ++++.+|...+.. .++.+ .+++.+.-..+|..+....+     +..|.||+....
T Consensus        10 ~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~-----~~~i~sD~G~~f   72 (163)
T 3l3u_A           10 GIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP-----VKTVHTDNGSNF   72 (163)
T ss_dssp             TEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC-----CCEEEECCCGGG
T ss_pred             CEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC-----CcEEeecChHhh
Confidence            5788999998642     5777888877654 56665 45566666666665555543     368999998764

>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A

Probab=80.93  E-value=8.6  Score=34.00  Aligned_cols=63  Identities=14%  Similarity=0.036  Sum_probs=41.5

Q ss_pred             eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchH
Q 040097          194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGI  268 (516)
Q Consensus       194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l  268 (516)
                      .++.+|-|+..++     ++++.+|.... ++.++.+-. ++.+...-+|..+....+    +| .|.||+....
T Consensus        60 ~~w~~D~~~~~~~-----y~l~~vD~~sr-~~~~~~~~~-~~~~~~~~~l~~~~~~~g----~~-~i~sDnG~~F  122 (210)
T 3f9k_A           60 GTWQMDCTHLEGK-----IIIVAVHVASG-FIEAEVIPQ-ESGRQTALFLLKLASRWP----IT-HLHTDNGANF  122 (210)
T ss_dssp             TEEEEEEEEETTE-----EEEEEEETTTT-EEEEEEESS-CCHHHHHHHHHHHHTTSC----CS-EEEECCCTTT
T ss_pred             CeEeEeecccCCe-----EEEEEEEcCCC-cEEEEEeCC-cchHHHHHHHHHHHHHcC----CC-EEEeCCCchh
Confidence            4778998888543     46677787776 566665544 566666666655555544    13 4999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	516
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	96.23
d1cxqa_	147	Retroviral integrase, catalytic domain {Rous sarco	89.27
d1exqa_	154	Retroviral integrase, catalytic domain {Human immu	86.53

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.23  E-value=0.0019  Score=44.92  Aligned_cols=41  Identities=10%  Similarity=0.142  Sum_probs=36.0

Q ss_pred             cEEEEEeecCCCccEEEEEEccCcceEEEEecCCCceeccc
Q 040097           34 TCVSCECSNLHCDWKITAVKEHRSNVFVICDITPMHTCNQH   74 (516)
Q Consensus        34 ~~~~~~C~~~gCp~rv~~~~~~~~~~~~V~~~~~~Hnc~~~   74 (516)
                      .|..++|+..||+++-.+.+..+++.-.++++.++|||+.+
T Consensus        30 pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_          30 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             ceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            57789999999999999999887777788899999999764

>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Rous sarcoma virus RSV [TaxId: 11886]

Probab=89.27  E-value=0.88  Score=36.07  Aligned_cols=69  Identities=10%  Similarity=-0.128  Sum_probs=41.6

Q ss_pred             eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHH
Q 040097          194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGID  269 (516)
Q Consensus       194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~  269 (516)
                      .++.+|-|+.... ++.-++.+.+|...+. +.++. ..+++.+.-...|..+....+    .|..|.||......
T Consensus         8 ~~w~~D~~~~~~~-~~~~~l~v~vD~~Sr~-i~~~~-~~~~t~~~~~~~l~~~~~~~g----~p~~i~sDnG~~F~   76 (147)
T d1cxqa_           8 QIWQTDFTLEPRM-APRSWLAVTVDTASSA-IVVTQ-HGRVTSVAAQHHWATAIAVLG----RPKAIKTDNGSCFT   76 (147)
T ss_dssp             CEEEEEEEECGGG-TTSCEEEEEEETTTCC-EEEEE-ESSCCHHHHHHHHHHHHHHHC----CCSEEECCSCHHHH
T ss_pred             CEEEEEEEEecCC-CCeEEEEEEEecccce-ecccc-cCccchHHHHHHHHHHHHHhC----CCeEEEeccccccc
Confidence            5788888877543 3444555667766543 44554 455665554444444444443    27889999987653

>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=86.53  E-value=0.69  Score=37.17  Aligned_cols=65  Identities=15%  Similarity=0.048  Sum_probs=43.9

Q ss_pred             ceEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHH
Q 040097          193 RMLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGID  269 (516)
Q Consensus       193 ~~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~  269 (516)
                      +.++.+|.|+..++|     +++.+|..-. ++.++.+ .+++.+.-.-||..+...+     +|..|.||+.....
T Consensus         3 pg~W~~D~~~~~~k~-----ilv~vD~~Sr-~~~~~~~-~~~~~~~v~~~l~~~~~~~-----~p~~I~sDnG~eF~   67 (154)
T d1exqa_           3 PGIWQLDCTHLEGKV-----ILVAVHVASG-YIEAEVI-PAETGQETAYFLLKLAGRW-----PVKTIHTDNGSNFT   67 (154)
T ss_dssp             GGEEEEEEEEETTEE-----EEEEEETTTT-EEEEEEE-SSSSHHHHHHHHHHHHHHS-----CCCEEECCCCGGGT
T ss_pred             CCceeeEEEEECCEE-----EEEEEECcCC-cEEEEEe-cCcchHHHHhhhhhheecc-----CCCEEEEcCCcccc
Confidence            347889999987653     5677888754 5666665 4556566666666655432     26789999988764