Citrus Sinensis ID: 040114

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MDEPFLSKTKGLAEGSSNASSIKRELPSGNLDHGPSRRQSTAHLVRSDAIIPIITAPKPPSYLNIIANLKKGKLTRRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLMYSD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHcccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHEEEEEEEHHHHHHHHHHHcccEEEEEccccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHcccccEcccccccccccHHHcccccccccccccHHHHHHHHHHccccHHccccccccccccccccccccccEccccccHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEcEEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccEcHHHHHccc
Coil and Loop (DISEMBL)
mdepflsktkglaegssnassikrelpsgnldhgpsrrqstahlvrsdaiipiitapkppsyLNIIANLkkgkltrrshsapsvftqfkeafpdsldprpplkstplIVQQAFIGLVLYILAGIVIYLtngnfkgkatfkpvdALYFIVVTLCtigygdivpdttftKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERRMRIRIKVCLALGVVIGCLAIGTVTVHFledmnwvdSFYLSVTSvttvgygdyaftTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVaadldndgsisksEFVIYKLKEMGKIAEKDILQICNqfdliddskcgkiTVADLMYSD
Flexible Loop (DISEMBL)
mdepflsktkglaegssnassikrelpsgnldhgpsrRQSTAHLVRSDAIipiitapkppsyLNIIANLKKGKLTRRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLvaadldndgsiskSEFVIYKLKEMGKIAEKDILQICNQfdliddskcgkiTVADLMYSD
Low Complexity Region (SEG)
MDEPFLSKTKGLAEGSSNASSIKRELPSGNLDHGPSRRQSTAHLVRSDaiipiitapkppSYLNIIANLKKGKLTRRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLMYSD
Disordered region (IsUnstruct)
*******************************************LVRSDAIIPIITAPKPPSYLNIIANLKK*********************************TPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM***
Disordered Region (DISOPRED)
*******************************************************APKPPSYLNIIANLKKGKLTRRSHS**************************LIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRR***************************KSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLMY**
Disordered Region (DISEMBL)
*********************IKRELPSGNLDHGPSRRQSTAHLVRSDAIIPIITAPKPPSYLNIIANLKKGKLTRRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLMYSD
Disordered Region (DISPRO)
**********************************PSRRQST*HLVRSDAIIPIITAPKP**********************PS*****KEAFPDSLDPRPPLKSTPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADL*Y**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRRRRRooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEPFLSKTKGLAEGSSNASSIKRELPSGNLDHGPSRRQSTAHLVRSDAIIPIITAPKPPSYLNIIANLKKGKLTRRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLMYSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	378	2.2.26 [Sep-21-2011]
Q9SVV6	436	Two-pore potassium channe	yes	no	0.801	0.694	0.517	2e-85
Q69TN4	456	Two pore potassium channe	no	no	0.714	0.592	0.536	3e-83
Q9FL25	443	Two-pore potassium channe	no	no	0.843	0.720	0.482	5e-81
Q9S6Z8	408	Two-pore potassium channe	no	no	0.804	0.745	0.475	9e-80
Q8LIN5	349	Two pore potassium channe	no	no	0.664	0.719	0.407	4e-53
Q8LBL1	363	Two-pore potassium channe	no	no	0.730	0.760	0.357	3e-50
Q9FWX6	284	Two-pore potassium channe	no	no	0.669	0.890	0.381	9e-46
Q850M0	347	Two pore potassium channe	no	no	0.759	0.827	0.356	2e-45
Q9XFR0	260	Potassium inward rectifie	no	no	0.410	0.596	0.525	4e-40
P40310	691	Outward-rectifier potassi	yes	no	0.383	0.209	0.237	4e-08

>sp|Q9SVV6|TPK3_ARATH Two-pore potassium channel 3 OS=Arabidopsis thaliana GN=TPK3 PE=2 SV=1

 Score =  316 bits (809), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 165/319 (51%), Positives = 221/319 (69%), Gaps = 16/319 (5%)

Query: 71  KGKLTRRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVLYILAGIVIY-LT 129
           +G    RS +AP++        P  +  + P +++  +V+QAF  LV+Y+  G++IY L 
Sbjct: 114 QGHALHRSKTAPAMAVINDLHHP--IRQKDPTETSRSVVRQAFALLVVYLSLGVLIYWLN 171

Query: 130 NGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGL 189
             ++    T   VD LYF +VT+CTIGYGDI P++  TKLF+ +F+L+GFGF+DILL+G+
Sbjct: 172 RDHYVVNQTHPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSGM 231

Query: 190 VTYICDRQEAVFLSTM---DENRERR----------MRIRIKVCLALGVVIGCLAIGTVT 236
           V+Y+ D QE+  L +    DE  +RR          MRIR+KV LALGVV+ C+A+G   
Sbjct: 232 VSYVLDLQESYMLDSAKRRDEPEKRRSYIIDVKKGRMRIRLKVALALGVVVLCIAVGVGI 291

Query: 237 VHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTEL 296
           +HF+E++ W+DSFYLSV SVTTVGYGD AF TL GR FA IWLLVSTLAVARAFLYL E 
Sbjct: 292 MHFIEEIGWLDSFYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLVSTLAVARAFLYLAEA 351

Query: 297 RIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICN 356
           R++KRNR  AK VL + M++    AAD+DN+G +SK+E+VIYKLKEM KI +KDIL I  
Sbjct: 352 RVDKRNRERAKKVLCETMSVSQFFAADIDNNGCVSKAEYVIYKLKEMEKITDKDILPISK 411

Query: 357 QFDLIDDSKCGKITVADLM 375
           QFD +D    GKIT+ DL+
Sbjct: 412 QFDKLDRCSNGKITLLDLL 430

Probable voltage-independent potassium-selective tonoplast ion channel.
Arabidopsis thaliana (taxid: 3702)

>sp|Q69TN4|KCO3_ORYSJ Two pore potassium channel c OS=Oryza sativa subsp. japonica GN=TPKC PE=3 SV=1

 Score =  309 bits (791), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 154/287 (53%), Positives = 202/287 (70%), Gaps = 17/287 (5%)

Query: 108 IVQQAFIGLVLYILAGIVIYLT-NGNFKGKA--TFKPVDALYFIVVTLCTIGYGDIVPDT 164
           IV  AF+ L+ Y+  G+  Y    GNF   A  T    DALYF +VTLCTIGYGDI P T
Sbjct: 154 IVLHAFLFLLAYLAMGVTFYAALPGNFTSSAGPTHPVADALYFCIVTLCTIGYGDITPAT 213

Query: 165 TFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENR--------------E 210
              KLF+  F+LIGFGFVDILL+G+V+Y+ D QE + ++ +   R              +
Sbjct: 214 PAAKLFSISFVLIGFGFVDILLSGMVSYVLDLQEHLLITALKNPRSVRKHRHNYIFDLKK 273

Query: 211 RRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLT 270
            RMR+R+KV LAL VV  C+ +G   +  +E++ W+D+ YL+V SVTTVGYGD+AF TL 
Sbjct: 274 GRMRVRMKVALALTVVAICVGVGAAVLKRVENLGWLDAVYLAVMSVTTVGYGDHAFRTLA 333

Query: 271 GRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSI 330
           GR FA  WLLVSTLAVARAFLYL E+RI+KR+R +A WVL + MT+ + +AAD+DN+G +
Sbjct: 334 GRLFASAWLLVSTLAVARAFLYLAEMRIDKRHRAMANWVLSRDMTVSEFLAADIDNNGYV 393

Query: 331 SKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLMYS 377
           +KSEFV+YKLKEMGKI+EKDI+ IC+QF  +D   CGKIT++DL+ S
Sbjct: 394 TKSEFVVYKLKEMGKISEKDIMMICDQFQRMDSGNCGKITLSDLLES 440

Inward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FL25|TPK2_ARATH Two-pore potassium channel 2 OS=Arabidopsis thaliana GN=TPK2 PE=2 SV=1

 Score =  301 bits (771), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 170/352 (48%), Positives = 226/352 (64%), Gaps = 33/352 (9%)

Query: 48  DAIIPIITAPKPPSYLNIIANLKKGKLT---RRSHSAPSVFTQFKEAFPDSLDPRPPLKS 104
           D ++P+    KP         ++K K T    RS +AP++      + P+  DP+   +S
Sbjct: 92  DLLLPLTEPNKP---------VRKSKPTINFHRSKTAPAMAAINNISHPN--DPKTDQQS 140

Query: 105 -TPLIVQQAFIGLVLYILAGIVIY-LTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVP 162
            +  IV QA   LV+Y+  G++IY L   ++  K T   VDALYF +VT+CTIGYGDI P
Sbjct: 141 DSKTIVNQAVALLVVYLSLGVLIYWLNRDSYNVKQTHPVVDALYFCIVTMCTIGYGDITP 200

Query: 163 DTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTM--------DENRER--- 211
           D+  TKLF+  F+L+GFGF+DILL+G+VTY+ D QE   L T         D ++ R   
Sbjct: 201 DSVVTKLFSIFFVLVGFGFMDILLSGMVTYVLDLQENYMLETARNESLNLNDRDKVRSYI 260

Query: 212 ------RMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYA 265
                 RMRIR+KV LALGVV+ CL  G + +HF+E + W+DSFY SV SVTTVGYGD A
Sbjct: 261 IDVKKGRMRIRLKVGLALGVVVLCLGFGVLIMHFVEKIGWLDSFYFSVMSVTTVGYGDRA 320

Query: 266 FTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLD 325
           F TL GR  A +WLLVSTLAVARA L+L E R++KRNR  AK VL + M++   + AD+D
Sbjct: 321 FNTLAGRLLAAMWLLVSTLAVARAILFLAESRVDKRNRERAKKVLGESMSISQFLDADID 380

Query: 326 NDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLMYS 377
            +G +SK+EFVIYKLK+M KI EKDI  I  QFD +D +  G+IT+ DL+ S
Sbjct: 381 CNGCVSKAEFVIYKLKKMDKITEKDINPIGFQFDKLDRTNSGRITLLDLLES 432

Probable voltage-independent potassium-selective tonoplast ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S6Z8|TPK5_ARATH Two-pore potassium channel 5 OS=Arabidopsis thaliana GN=TPK5 PE=1 SV=1

 Score =  297 bits (760), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 157/330 (47%), Positives = 218/330 (66%), Gaps = 26/330 (7%)

Query: 69  LKKGKLTRRSHSAPS--VFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVLYILAGIVI 126
           L + +   RS +AP+  +    +   P++  P P  KS   I++QA   L++Y+  G+ I
Sbjct: 78  LSQTRPLHRSRTAPAMVIIKDLRTKPPETKKPSPVSKS---IIRQAIFLLIVYLTLGVSI 134

Query: 127 YLTN-GNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDIL 185
           Y  N  ++ G  T   VDALYF +VT+CTIGYGDI P T +TK+F  VF+L GFGF+DIL
Sbjct: 135 YSFNRDHYSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPWTKIFAVVFVLFGFGFLDIL 194

Query: 186 LNGLVTYICDRQEAVFLSTMDEN--------------------RERRMRIRIKVCLALGV 225
           L+G+V Y+ D QE++ L+ +                        + RMRIR+KVCLAL V
Sbjct: 195 LSGVVNYVLDLQESMILTGIQTRQHHQHHHHHRFSAKDYIIDFEKGRMRIRMKVCLALCV 254

Query: 226 VIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLA 285
           V+ C+ +G + +HF+E++ +VDS YLSV SVTTVGYGD AF TL GR FA +WLLVSTLA
Sbjct: 255 VVLCIGVGALVLHFVEELGFVDSVYLSVMSVTTVGYGDRAFKTLQGRLFAAVWLLVSTLA 314

Query: 286 VARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGK 345
           VARAFLYL E RI++R+R+  K  L +++T+ DL+ AD    G ISKSE+++ KLKEMGK
Sbjct: 315 VARAFLYLAEARIDRRHRKAVKLALNREITVDDLLKADTYQHGFISKSEYIVLKLKEMGK 374

Query: 346 IAEKDILQICNQFDLIDDSKCGKITVADLM 375
           I +KDI Q+  QF+ +D ++ GKIT+ DL+
Sbjct: 375 ITQKDIDQVVIQFEKLDPNQIGKITLPDLL 404

Probable voltage-independent potassium-selective tonoplast ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LIN5|KCO2_ORYSJ Two pore potassium channel b OS=Oryza sativa subsp. japonica GN=TPKB PE=1 SV=1

 Score =  208 bits (530), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 104/255 (40%), Positives = 157/255 (61%), Gaps = 4/255 (1%)

Query: 124 IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVD 183
           I  YL   +  G  T + +DALYF VVT+ T+GYGD+VP +   KL  C F+  G   V 
Sbjct: 81  IAFYLAMDHMSGTRTTRALDALYFCVVTMTTVGYGDLVPASDAAKLLACAFVFAGVAVVG 140

Query: 184 ILLNGLVTYICDRQEAVFLSTMDEN---RERRM-RIRIKVCLALGVVIGCLAIGTVTVHF 239
             L+    Y+ ++QEA+    +  +   R   M ++R K+  A  +++  +A GTV +  
Sbjct: 141 TFLSKAADYLVEKQEALLFRALHSHTMVRAMEMNKVRYKLYTAGLLLVAAVASGTVVLWK 200

Query: 240 LEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIE 299
           +E M  VD+FY    +VTT+GYGD +F++  GR FA+ W+ VST+ VA  FLY  EL  E
Sbjct: 201 VEGMRAVDAFYCVCATVTTLGYGDRSFSSEGGRAFAVAWITVSTVVVALFFLYAAELYTE 260

Query: 300 KRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFD 359
           +R R +A+WVL+++ T  DL AADLD D  +  ++FV+YKLKE+GKI+++DI +  ++FD
Sbjct: 261 RRQRELARWVLRRRTTNMDLEAADLDGDHRVGAADFVLYKLKELGKISQEDISEFLDEFD 320

Query: 360 LIDDSKCGKITVADL 374
            +D    G ++ ADL
Sbjct: 321 NLDADHSGTLSPADL 335

Highly selective inward-rectifying potassium channel that is specifically located in the tonoplast of protein storage vacuoles. Functions independently of the voltage difference across the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LBL1|TPK1_ARATH Two-pore potassium channel 1 OS=Arabidopsis thaliana GN=TPK1 PE=1 SV=2

 Score =  199 bits (506), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 107/299 (35%), Positives = 172/299 (57%), Gaps = 23/299 (7%)

Query: 97  DPRPPLKSTPLI------VQQAFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIV 149
           +P P     P+       +++  + L LY+  G +  YL      G  T   VDALYF +
Sbjct: 58  EPPPHPSKIPMFSDLNPNLRRVIMFLALYLTIGTLCFYLVRDQISGHKTSGVVDALYFCI 117

Query: 150 VTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLST----- 204
           VT+ T+GYGD+VP+++ ++L  C F+  G   V  LL+    Y+ ++QEA+ +       
Sbjct: 118 VTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGHLLSRAADYLVEKQEALLVRAFHLRQ 177

Query: 205 -------MDENRERRMRIRI-KVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSV 256
                  + E    ++R +    CL L V+     +GT+ +  +E M  + +FY   ++V
Sbjct: 178 SFGPTDILKELHTNKLRYKCYATCLVLVVL---FIVGTIFLVMVEKMPVISAFYCVCSTV 234

Query: 257 TTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTL 316
           TT+GYGD +F +  GR FA+ W+L S++ +A+ FLY+ EL  E + R + KWVL +++T 
Sbjct: 235 TTLGYGDKSFNSEAGRLFAVFWILTSSICLAQFFLYVAELNTENKQRALVKWVLTRRITN 294

Query: 317 GDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375
            DL AADLD DG +  +EF++YKLKEMGKI EKDI  I ++F+ +D  + G +T +D++
Sbjct: 295 NDLEAADLDEDGVVGAAEFIVYKLKEMGKIDEKDISGIMDEFEQLDYDESGTLTTSDIV 353

Voltage-independent, large conductance and potassium-selective tonoplast ion channel. Regulated by cytoplasmic calcium and pH. Does not mediate slow-vacuolar (SV) ionic currents, but essential to establish VK currents. Has some permeability for Rb(+) and NH(4)(+), but none for Na(+), Cs(+) or Li(+). Involved in intracellular K(+) redistribution and/or K(+) retranslocation between different tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX6|TPK4_ARATH Two-pore potassium channel 4 OS=Arabidopsis thaliana GN=TPK4 PE=2 SV=2

 Score =  184 bits (467), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 109/286 (38%), Positives = 160/286 (55%), Gaps = 33/286 (11%)

Query: 89  KEAFPDSLDPRPPLKSTPLIVQQAFIGLVLYILAGIVIY-LTNGNFKGKATFKPVDALYF 147
            E+ P+        KS   I+  A I L++Y+  G+  Y      F G  T   VDA YF
Sbjct: 15  NESSPEETQVTTVSKSKWTILVLAMILLLVYLTFGVCTYSFFRDQFSGTETNLFVDAFYF 74

Query: 148 IVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDE 207
            +VT  T+GYGDIVP T+ TK+ T V +  G  F+D LLN +V+++   QE   L  +++
Sbjct: 75  SIVTFSTVGYGDIVPSTSTTKILTIVLVSTGVVFLDYLLNRVVSHVLSLQENAILDRINK 134

Query: 208 NRER----------RMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVT 257
            R R          ++R++ K+CLA   V  C+  G + +H  E ++W+DS YLSV SVT
Sbjct: 135 TRNRAIRDHIAEDGKIRLKWKLCLAFCAVGLCVGSGALFLHVFERLDWLDSVYLSVISVT 194

Query: 258 TVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLG 317
           TVGYGD  F T+ GR FA+ WLL+ST+A+A  FLYL E+RI++             M L 
Sbjct: 195 TVGYGDKTFKTVEGRGFAVFWLLLSTIAMATLFLYLAEMRIDRTT----------VMKLP 244

Query: 318 DLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDD 363
                        S+SEF+++KL+E G+I+E DI QI  +F+ +++
Sbjct: 245 P------------SESEFIVFKLRESGRISEDDIKQIVREFENLEE 278

Voltage-independent, instantaneously activating, potassium-selective plasma membrane ion channel. Open rectifier. Regulated by cytoplasmic pH and extra-cellular calcium. Has some permeability for Rb(+) and NH(4)(+), but none for Na(+) or Li(+).

Arabidopsis thaliana (taxid: 3702)

>sp|Q850M0|KCO1_ORYSJ Two pore potassium channel a OS=Oryza sativa subsp. japonica GN=TPKA PE=1 SV=1

 Score =  183 bits (464), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/323 (35%), Positives = 182/323 (56%), Gaps = 36/323 (11%)

Query: 76  RRSHSAPSVFTQFKEAFPDSLDPR--PPLKSTPLIVQQAF---------IGLVL--YILA 122
           RR  S PS             DP   PP K + +  ++ F         +GL+L  Y+L 
Sbjct: 30  RRCRSTPST------------DPLQGPPEKGSSVKAKELFKEMRPSFRLVGLLLFIYLLV 77

Query: 123 GIV-IYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGF 181
           G++  Y       GK T + +DALYF VVT+ T+GYGD+VP+   TKL  C F+ +G   
Sbjct: 78  GVLAFYAVMDEISGKRTNRVLDALYFCVVTMTTVGYGDLVPNNDTTKLLACAFVFMGMAV 137

Query: 182 VDILLNGLVTYICDRQEAVFLSTMDENR---ERRM-------RIRIKVCLALGVVIGCLA 231
           V + ++ +  Y+ ++QE +F   +  N    E +M       RI+ K      +++  + 
Sbjct: 138 VALFVSKVADYLVEKQEVLFFKALHTNLKGGETKMLRAIETNRIKYKFYTNALLLVLSII 197

Query: 232 IGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFL 291
            GTV +  +E ++ VDSFY    ++TT+GYGD +F++  GR FA+ W++ ST+ +A+ F+
Sbjct: 198 SGTVFLWKVEKLSLVDSFYCVCATITTLGYGDKSFSSKLGRVFAVFWIITSTIIMAQFFM 257

Query: 292 YLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDI 351
           YL E+  E+R + +A WVL +KMT  DL AADLD+D  +  +EFV+YKLKE+GKI +++I
Sbjct: 258 YLAEIYTERRQKMLANWVLTRKMTKMDLEAADLDDDRQVGAAEFVVYKLKELGKINQEEI 317

Query: 352 LQICNQFDLIDDSKCGKITVADL 374
                +F+ +D    G ++  DL
Sbjct: 318 SSFLEEFEKLDVDHSGTLSPYDL 340

Highly selective inward-rectifying potassium channel that is specifically located in the tonoplast of large vacuoles. Functions independently of the voltage difference across the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XFR0|KCO3_ARATH Potassium inward rectifier (Kir)-like channel 3 OS=Arabidopsis thaliana GN=KCO3 PE=1 SV=1

 Score =  166 bits (419), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 109/158 (68%), Gaps = 3/158 (1%)

Query: 217 IKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAI 276
           + V L   VV  C   G + VHF+  + W+DSF  SV  VTTVG+GD AF T  G   A 
Sbjct: 100 VAVALYFFVVTFC---GFLIVHFVVKIGWLDSFCFSVMMVTTVGFGDRAFNTWLGTFLAA 156

Query: 277 IWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFV 336
           +WLLVSTLAVARAFL+L + R +KRNR  AK VL + +++    AAD+DNDG +S +EF 
Sbjct: 157 VWLLVSTLAVARAFLFLADARADKRNRERAKKVLGESISISQFFAADIDNDGRLSLAEFA 216

Query: 337 IYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADL 374
           IYKLK+M KI ++D +QICNQFD +D ++ G+IT+ DL
Sbjct: 217 IYKLKQMEKITQEDFIQICNQFDKLDRTQSGRITLVDL 254

Probable calcium-activated potassium channel.

Arabidopsis thaliana (taxid: 3702)

>sp|P40310|TOK1_YEAST Outward-rectifier potassium channel TOK1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOK1 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 40/185 (21%)

Query: 131 GNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLV 190
           G F G       +ALYF  V+L T+G GDI+P +   K+   +F L G     ++L GL+
Sbjct: 264 GMFSGLLHITYGNALYFCTVSLLTVGLGDILPKSVGAKIMVLIFSLSG-----VVLMGLI 318

Query: 191 TYIC-----------------------------------DRQEAVFLSTMDENRERRMRI 215
            ++                                      +EA  L         R + 
Sbjct: 319 VFMTRSIIQKSSGPIFFFHRVEKGRSKSWKHYMDSSKNLSEREAFDLMKCIRQTASRKQH 378

Query: 216 RIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFA 275
              + + + + +    +G +   F E+ ++ +  Y     + T+GYGDYA  T  GR F 
Sbjct: 379 WFSLSVTIAIFMAFWLLGALVFKFAENWSYFNCIYFCFLCLLTIGYGDYAPRTGAGRAFF 438

Query: 276 IIWLL 280
           +IW L
Sbjct: 439 VIWAL 443

Outwardly rectifying potassium channel.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
255586934	384	Calcium-activated outward-rectifying pot	0.960	0.945	0.674	1e-146
225446841	390	PREDICTED: probable calcium-activated ou	0.992	0.961	0.689	1e-143
224066569	314	outward rectifying potassium channel [Po	0.793	0.955	0.747	1e-133
224082562	292	outward rectifying potassium channel [Po	0.738	0.955	0.780	1e-123
356499358	381	PREDICTED: probable calcium-activated ou	0.960	0.952	0.582	1e-121
359485197	375	PREDICTED: LOW QUALITY PROTEIN: probable	0.952	0.96	0.628	1e-120
356553605	330	PREDICTED: LOW QUALITY PROTEIN: probable	0.822	0.942	0.621	1e-111
326517677	394	predicted protein [Hordeum vulgare subsp	0.843	0.809	0.540	2e-95
255557407	426	Calcium-activated outward-rectifying pot	0.788	0.699	0.563	2e-94
224116730	435	outward rectifying potassium channel [Po	0.791	0.687	0.566	1e-93

>gi|255586934|ref|XP_002534067.1| Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis] gi|223525894|gb|EEF28311.1| Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 265/393 (67%), Positives = 308/393 (78%), Gaps = 30/393 (7%)

Query: 1   MDEPFLSKTKGLAEGSSNASSIKRELPSGNLDHGPSRRQSTAHLVRSDAIIPIITAPKP- 59
           MDEPFL KT    + +  +SS  RE PSG LD           +  +DA+IP++  P   
Sbjct: 1   MDEPFLPKTT--QKDTYRSSSSWREFPSGYLDP----------ITNNDALIPVVKTPNAS 48

Query: 60  --PSYLNIIANLKKG--KLTRRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIG 115
             PSY+N++++L K   KL  RSHSAP +FT  K +  + LDPRP  KSTP+IV QAFIG
Sbjct: 49  PSPSYVNLLSSLNKNRRKLPHRSHSAPPIFTDAKGSSTNFLDPRPTPKSTPVIVWQAFIG 108

Query: 116 LVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFI 175
           ++LY+L  +V +L +G FKG  T +PVDALYF VVTLCTIG+GDI+PD+TFTKL TCVFI
Sbjct: 109 VILYLLIVVVTFLVSGKFKGTTTSRPVDALYFTVVTLCTIGFGDIIPDSTFTKLLTCVFI 168

Query: 176 LIGFGFVDILLNGLVTYICDRQEAVFLSTMDENR-------------ERRMRIRIKVCLA 222
           L+GFGF+DILLNGLVTYICDRQEAV LS +DENR             + RMRIR KVCLA
Sbjct: 169 LVGFGFIDILLNGLVTYICDRQEAVLLSAVDENRFNTMVQAYVIDRAKGRMRIRTKVCLA 228

Query: 223 LGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVS 282
           L VV GC+AIGT+ VHFLE ++WVDSFYLSVTSVTTVGYGDYAFTT+TGRCFAI+WLL+S
Sbjct: 229 LVVVFGCIAIGTIAVHFLESLSWVDSFYLSVTSVTTVGYGDYAFTTITGRCFAIVWLLIS 288

Query: 283 TLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKE 342
           TLAVARAFLYL ELRI+KRNR IAKWVLQKKMTLGDLVAADLDNDGSISKSEF+IYKLKE
Sbjct: 289 TLAVARAFLYLAELRIDKRNRIIAKWVLQKKMTLGDLVAADLDNDGSISKSEFIIYKLKE 348

Query: 343 MGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375
           MGKI EKDIL ICNQFD+ID+S CGKIT+A LM
Sbjct: 349 MGKITEKDILLICNQFDIIDNSNCGKITLAGLM 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446841|ref|XP_002279555.1| PREDICTED: probable calcium-activated outward-rectifying potassium channel 6 [Vitis vinifera]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/393 (68%), Positives = 313/393 (79%), Gaps = 18/393 (4%)

Query: 1   MDEPFLSKTKGLAEGSSNASSIKRELPSGNLDHGPSRRQSTAHLVRSDAIIPIITAPKPP 60
           MDE  LS+T    E  S+  S +RE  S  LD G   RQSTA ++ +DA+IPIIT P   
Sbjct: 1   MDEALLSRTAAGEE--SSRPSPRREFTSSLLDLGSPWRQSTARIITTDAVIPIITTPNS- 57

Query: 61  SYLNIIANL-KKGKLTRRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVLY 119
           S+ N+I+NL +K  LT RSHSAPSVFT  KEAFP S DPRP  KS PLIV+QA+I ++LY
Sbjct: 58  SFANLISNLNRKRNLTHRSHSAPSVFTDVKEAFPTSADPRPSRKSMPLIVRQAYIWVILY 117

Query: 120 ILAGIVIY-LTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIG 178
            + GI+I+ L +G+FKG  T KPVDALYF VVTLCTIGYGDIVPD+TFTK+FTCVFIL+G
Sbjct: 118 GIVGILIFCLKSGSFKGHLTVKPVDALYFSVVTLCTIGYGDIVPDSTFTKMFTCVFILVG 177

Query: 179 FGFVDILLNGLVTYICDRQEAVFLSTMDENR-------------ERRMRIRIKVCLALGV 225
           FGF+DILLNGLVTY+ DRQEAV +ST+D N+             + RMRIRIKV LAL V
Sbjct: 178 FGFIDILLNGLVTYVLDRQEAVMMSTVDLNQFNTMVRTYMIDTEKGRMRIRIKVGLALAV 237

Query: 226 VIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLA 285
           V+ C+A+GT+ +H LE + WVDS YLSVTSVTTVGYGDYAF TL GRCFAIIWLLVSTLA
Sbjct: 238 VVVCIAVGTIGIHLLEGLTWVDSIYLSVTSVTTVGYGDYAFETLAGRCFAIIWLLVSTLA 297

Query: 286 VARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGK 345
           VARAFLYLTELRI+KRNRRIAKWVLQKK+TLGDLVAADLDNDGSISKSEFVIYKLKEMGK
Sbjct: 298 VARAFLYLTELRIDKRNRRIAKWVLQKKLTLGDLVAADLDNDGSISKSEFVIYKLKEMGK 357

Query: 346 IAEKDILQICNQFDLIDDSKCGKITVADLMYSD 378
           I+EKDIL I  QF+ +D + CGKIT+ADLM SD
Sbjct: 358 ISEKDILLISKQFESLDHTNCGKITIADLMDSD 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066569|ref|XP_002302141.1| outward rectifying potassium channel [Populus trichocarpa] gi|222843867|gb|EEE81414.1| outward rectifying potassium channel [Populus trichocarpa]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/313 (74%), Positives = 264/313 (84%), Gaps = 13/313 (4%)

Query: 76  RRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVLYILAGIVIYLTNGNFKG 135
            RSHSAPSVFT  KE+F DS DPR   KSTPLIV+QAFI + LYIL  ++I+L  G FKG
Sbjct: 1   HRSHSAPSVFTDSKESFTDSFDPRQAPKSTPLIVRQAFIAVFLYILVVVLIFLVGGRFKG 60

Query: 136 KATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICD 195
             T KPVDALYF VVTLCTIGYGDIVPDT FTKLFTCVF+L+GFGF+DILLNGLVTYICD
Sbjct: 61  TETIKPVDALYFTVVTLCTIGYGDIVPDTIFTKLFTCVFVLVGFGFIDILLNGLVTYICD 120

Query: 196 RQEAVFLSTMDENR-------------ERRMRIRIKVCLALGVVIGCLAIGTVTVHFLED 242
           RQEAV LSTMDE++             + RMRIR+KV +A  VVI C+A+GT++  +LE 
Sbjct: 121 RQEAVLLSTMDESKSITMVQAYMIDKAKGRMRIRMKVGMASAVVIVCIAVGTISARYLEK 180

Query: 243 MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRN 302
           ++WVDSFYLSVTSVTTVGYGD+AF+T+TGRCFAIIWL VSTLAVARAFLYLTELRI+KRN
Sbjct: 181 LDWVDSFYLSVTSVTTVGYGDFAFSTITGRCFAIIWLSVSTLAVARAFLYLTELRIDKRN 240

Query: 303 RRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLID 362
           RRIAKW+L KKMTLGDLVAADLDNDGSISKSEFVIYKLKEMG IAEKD+LQICNQFD + 
Sbjct: 241 RRIAKWILHKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGMIAEKDMLQICNQFDSLV 300

Query: 363 DSKCGKITVADLM 375
            + CGKIT+ADLM
Sbjct: 301 STSCGKITLADLM 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082562|ref|XP_002306742.1| outward rectifying potassium channel [Populus trichocarpa] gi|222856191|gb|EEE93738.1| outward rectifying potassium channel [Populus trichocarpa]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/292 (78%), Positives = 254/292 (86%), Gaps = 13/292 (4%)

Query: 97  DPRPPLKSTPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIG 156
           DPRP  KSTPLIV+QAF+G+ LY+L  ++I+L +G F+G ATFKPVDALYF VVTLCTIG
Sbjct: 1   DPRPGSKSTPLIVRQAFVGVFLYVLVVVLIFLVSGRFRGTATFKPVDALYFTVVTLCTIG 60

Query: 157 YGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMD---------- 206
           YGDIVPDTTFTKLFTC FIL+GFGF+DILLNGLVTYICD+QEAV LSTMD          
Sbjct: 61  YGDIVPDTTFTKLFTCGFILVGFGFIDILLNGLVTYICDKQEAVLLSTMDGSTPTTMVQA 120

Query: 207 ---ENRERRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGD 263
              +  + RMRIR KV LA  VVI C+A+GT+TVH+LE ++WVDSFYL+VTSVTTVGYGD
Sbjct: 121 YMIDKAKGRMRIRTKVVLASAVVIVCIAVGTITVHYLEKLDWVDSFYLAVTSVTTVGYGD 180

Query: 264 YAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAAD 323
           YAFTT+TGRCFAIIWLLVSTLAVARAFLYL ELRI+KRNRRIAKWVLQKKMTLGDLVAAD
Sbjct: 181 YAFTTITGRCFAIIWLLVSTLAVARAFLYLAELRIDKRNRRIAKWVLQKKMTLGDLVAAD 240

Query: 324 LDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375
           LDNDGSISKSEFVIYKLKEMGKIAEKDI QICNQFD +D + CGKIT+ADLM
Sbjct: 241 LDNDGSISKSEFVIYKLKEMGKIAEKDIQQICNQFDSLDSTNCGKITLADLM 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499358|ref|XP_003518508.1| PREDICTED: probable calcium-activated outward-rectifying potassium channel 6-like [Glycine max]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/390 (58%), Positives = 280/390 (71%), Gaps = 27/390 (6%)

Query: 1   MDEPFLSKTKGLAEGSSNASSIKRELPSGNLDHGPSRRQSTAHLVRSDAIIPIITAPKPP 60
           M E  L      A+  + +S  +  +    L   PS  QS++H V ++A           
Sbjct: 1   MQESLLRSCSRKADSPNRSSPGELSIHDLALALAPSLFQSSSHHVTNEA----------K 50

Query: 61  SYLNIIANL--KKGKLTRRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVL 118
           + +++IANL  KKGK   RS SAPS+   F +   D  +P  P KS+  IV+ +F+G+ L
Sbjct: 51  TSMHLIANLAFKKGKFIHRSRSAPSLL--FTDMGLDFQEPSEPHKSSTSIVRLSFLGVFL 108

Query: 119 YILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIG 178
           Y+  G+ +Y+T+G+F+G  TF+PVDA+YF +VTLCTIGYGDIVPD+TFTK+FTC FIL+G
Sbjct: 109 YVAIGVTVYMTSGSFRGTTTFRPVDAVYFTMVTLCTIGYGDIVPDSTFTKIFTCGFILVG 168

Query: 179 FGFVDILLNGLVTYICDRQEAVFLSTMDENRER-------------RMRIRIKVCLALGV 225
           FGF+  LLNGLV YICD QEA  LS MDENR +             RMRIR KVCLAL V
Sbjct: 169 FGFLGFLLNGLVAYICDTQEAFLLSMMDENRYKKILRTYMVDEEKGRMRIRTKVCLALAV 228

Query: 226 VIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLA 285
           VIGC+AIGTVTVH +ED+NW DS YLS+TSVTTVGYGD++  T+TGRCFAIIWLLVSTLA
Sbjct: 229 VIGCIAIGTVTVHLVEDLNWDDSIYLSITSVTTVGYGDFSLRTVTGRCFAIIWLLVSTLA 288

Query: 286 VARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGK 345
           VARAF+YLTE  I KRNR++A+WVLQKK+TL DL AADLDNDGSISKS+FVIYKLK+MGK
Sbjct: 289 VARAFIYLTEYSIHKRNRKMAQWVLQKKITLSDLAAADLDNDGSISKSDFVIYKLKQMGK 348

Query: 346 IAEKDILQICNQFDLIDDSKCGKITVADLM 375
           I E DILQI  QFD ++    GKIT+ADLM
Sbjct: 349 ITEIDILQISKQFDSLEHGMYGKITLADLM 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485197|ref|XP_003633230.1| PREDICTED: LOW QUALITY PROTEIN: probable calcium-activated outward-rectifying potassium channel 6-like [Vitis vinifera]

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 247/393 (62%), Positives = 288/393 (73%), Gaps = 33/393 (8%)

Query: 1   MDEPFLSKTKGLAEGSSNASSIKRELPSGNLDHGPSRRQSTAHLVRSDAIIPIITAPKPP 60
           MDE  LS+   +  G S+  S +RE  S  LD G   RQSTA          I T     
Sbjct: 1   MDEALLSRQAVV--GESSRPSPRREFASSILDPGSHWRQSTAR---------ITTTTPTS 49

Query: 61  SYLNIIANL-KKGKLTRRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVLY 119
            ++++I+NL +K  L RRSHSAPSVFT  KE      DPRP  KS PLIV+QAFI ++LY
Sbjct: 50  FFVDLISNLNRKRNLPRRSHSAPSVFTYAKE------DPRPSQKSMPLIVRQAFIWVILY 103

Query: 120 ILAGIVIY-LTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIG 178
            + GIVI  L +G+FKG  T KPVDALYF VVTLCTIGYGDIVPDTTFTK+FTCVFIL+G
Sbjct: 104 CIVGIVIICLKSGSFKGHLTVKPVDALYFSVVTLCTIGYGDIVPDTTFTKMFTCVFILVG 163

Query: 179 FGFVDILLNGLVTYICDRQEAVFLSTMDENR-------------ERRMRIRIKVCLALGV 225
           FG + ILLNGL+TY+ DRQEAV +ST+D N+             + R+RIRIKV LAL V
Sbjct: 164 FGIIHILLNGLLTYVLDRQEAVMMSTVDLNQCHTMIQTYMIDPEKGRIRIRIKVVLALAV 223

Query: 226 VIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLA 285
           VI C+A+GT+ +H LED+ WVDS YLSVTSVTTVGYGDYAF TL GRCFAIIWLLVSTLA
Sbjct: 224 VIVCIAVGTIGIHLLEDLTWVDSVYLSVTSVTTVGYGDYAFETLAGRCFAIIWLLVSTLA 283

Query: 286 VARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGK 345
           VARAFLYLTEL I++RNRRIAK VL+ K+ L  LVAA+LDNDGSISKSE VIYKLKEMGK
Sbjct: 284 VARAFLYLTELSIDRRNRRIAKSVLE-KLILAGLVAAELDNDGSISKSELVIYKLKEMGK 342

Query: 346 IAEKDILQICNQFDLIDDSKCGKITVADLMYSD 378
           I+ KDI+ I N FD +D + CGKIT+ DLM SD
Sbjct: 343 ISXKDIMLITNXFDSLDHTNCGKITIVDLMASD 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553605|ref|XP_003545145.1| PREDICTED: LOW QUALITY PROTEIN: probable calcium-activated outward-rectifying potassium channel 6-like [Glycine max]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/328 (62%), Positives = 250/328 (76%), Gaps = 17/328 (5%)

Query: 63  LNIIANL--KKGKLTRRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVLYI 120
           +++IANL   KGK+  RS SAPS+   F +   D  +P  P KS+  IV+ +F+G+ LY+
Sbjct: 1   MHLIANLAFNKGKIILRSCSAPSLL--FTDTGVDFQEPSEPHKSSTSIVKLSFLGVFLYV 58

Query: 121 LAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFG 180
             G+ +Y+T+G+F+G  TF+PVDA+YF +VTLC IGY DIVPD+TFTK+FTC FIL+GFG
Sbjct: 59  ATGVTVYMTSGSFRGSTTFRPVDAVYFTMVTLCNIGYVDIVPDSTFTKIFTCAFILVGFG 118

Query: 181 FVDILLNGLVTYICDRQEAVFLSTMDENRER-------------RMRIRIKVCLALGVVI 227
           F+  LLNGLV YICD QEA  LS +DENR +             RMRIR K CLAL VVI
Sbjct: 119 FLGFLLNGLVAYICDIQEAFLLSMVDENRYKKILRTYMVDEEKGRMRIRTKFCLALAVVI 178

Query: 228 GCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVA 287
            C+AIGTVTVH +ED+NW DS YLS+TSVTTVGYGD++  T+TGRCFAIIWLLVST AVA
Sbjct: 179 DCIAIGTVTVHLVEDLNWDDSIYLSITSVTTVGYGDFSLRTVTGRCFAIIWLLVSTPAVA 238

Query: 288 RAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIA 347
           RA +YLTE  I+KRN ++A+WVLQKK+TL DL AADLDNDGSISKS+FVIYKL +MGKI 
Sbjct: 239 RASIYLTEYSIQKRNCKMAQWVLQKKITLSDLAAADLDNDGSISKSDFVIYKLXQMGKIT 298

Query: 348 EKDILQICNQFDLIDDSKCGKITVADLM 375
           E DILQI  QFD ++    GKIT+ADLM
Sbjct: 299 EIDILQISKQFDSLEHGMYGKITLADLM 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326517677|dbj|BAK03757.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 182/337 (54%), Positives = 244/337 (72%), Gaps = 18/337 (5%)

Query: 55  TAPKPPSYLNIIANLKKGKLTRRSHSAPSVFTQFKEA-FPDSLDPR-PPLKSTPLIVQQA 112
           T  +PP+  N   N+      +R  S+PS+FT  KEA     LD + P  + TP I +QA
Sbjct: 57  TLNQPPA-TNENTNIVSTPTLQRVRSSPSIFTSIKEAPCAHELDKQSPAAQYTPSITRQA 115

Query: 113 FIGLVLYILAGIVIYLTN-GNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFT 171
            + ++LYI  G+++Y+TN   FKGK+TFK VDALYF +++LC IGYGDIVP TTFTK+FT
Sbjct: 116 IVSVILYISIGVIVYMTNVEGFKGKSTFKLVDALYFTIISLCAIGYGDIVPCTTFTKVFT 175

Query: 172 CVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENR-------------ERRMRIRIK 218
           C+F+LIG  FVDI+LNGL+T + D+Q AV LSTMD+N+             ++R R +IK
Sbjct: 176 CLFLLIGVRFVDIMLNGLLTNVLDKQRAVLLSTMDDNKLNKVFDTYMIDAEKKRSRGKIK 235

Query: 219 VCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIW 278
           V LALGVV G ++I T+ VH +E +NW+DSFYLSV SVTTVGYGDY F+T  GR  A + 
Sbjct: 236 VLLALGVVAGSISICTIIVHGVEGLNWIDSFYLSVISVTTVGYGDYGFSTTAGRLSATVC 295

Query: 279 LLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIY 338
           LLVSTLAV +AFL+LT+LR+++RNRR  KW+LQKKM   + +AAD+DND ++SKS+F+IY
Sbjct: 296 LLVSTLAVGKAFLFLTDLRMDRRNRRTTKWILQKKMD-NEPLAADIDNDAAVSKSDFMIY 354

Query: 339 KLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375
           KLKEMGKI EKD+  I +QFD +  +KCG + +AD++
Sbjct: 355 KLKEMGKIDEKDVTMISDQFDQLGLAKCGNVALADII 391

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557407|ref|XP_002519734.1| Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis] gi|223541151|gb|EEF42707.1| Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 177/314 (56%), Positives = 230/314 (73%), Gaps = 16/314 (5%)

Query: 76  RRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVLYILAGIVIYLTN-GNFK 134
            RS +AP++     ++   S  P+P   S   IV+QAF+ L+LY+  G+VIY  N GNF 
Sbjct: 111 HRSKTAPAM-AVINDSLNSSHIPKPQFGSQS-IVRQAFVLLILYLSFGVVIYWLNRGNFL 168

Query: 135 GKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYIC 194
              T   VDA YF +VT+CTIGYGDI P++T TKLF+ +F+L+GFGF+DILL+G+V+Y+ 
Sbjct: 169 ANETHPVVDAFYFCIVTMCTIGYGDITPNSTSTKLFSILFVLVGFGFIDILLSGMVSYML 228

Query: 195 DRQEAVFL-------------STMDENRERRMRIRIKVCLALGVVIGCLAIGTVTVHFLE 241
           D QE   L             S + + ++ RMRIR+KV LALGVV+ C+ +G   +HFLE
Sbjct: 229 DLQENYLLRNAKRGGDKEAAGSVIFDVKKGRMRIRMKVALALGVVVLCIGVGCGVMHFLE 288

Query: 242 DMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKR 301
           ++ W+DSFYLSV SVTTVGYGD AFT+L GR FA IWLLVSTLAVARAFLYL E R++KR
Sbjct: 289 NLGWLDSFYLSVMSVTTVGYGDKAFTSLPGRIFASIWLLVSTLAVARAFLYLAEARVDKR 348

Query: 302 NRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLI 361
           +RR+AKWVL + MT+ + +AAD+D +G +SKSE+VIYKLKEMGK++EKD+LQIC  FD I
Sbjct: 349 HRRMAKWVLGQHMTVSEFLAADIDQNGFVSKSEYVIYKLKEMGKVSEKDVLQICQTFDRI 408

Query: 362 DDSKCGKITVADLM 375
           D   CGKIT+ADLM
Sbjct: 409 DAGNCGKITLADLM 422

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116730|ref|XP_002331863.1| outward rectifying potassium channel [Populus trichocarpa] gi|222875381|gb|EEF12512.1| outward rectifying potassium channel [Populus trichocarpa]

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 179/316 (56%), Positives = 227/316 (71%), Gaps = 17/316 (5%)

Query: 76  RRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVLYILAGIVIY-LTNGNFK 134
            RS +AP++        P    P+   +S   IV+QAF+ LVLY+  G++IY L    FK
Sbjct: 121 HRSKTAPAMAVINDLNHPAITKPKFGSQS---IVRQAFVLLVLYLSLGVLIYSLNRDKFK 177

Query: 135 GKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYIC 194
           G AT   VDALYF +VT+CTIGYGDI PD+T TKLF+ +F+LIGFGFVDILL+G+V+Y+ 
Sbjct: 178 GNATNPVVDALYFCIVTMCTIGYGDITPDSTATKLFSILFVLIGFGFVDILLSGMVSYVL 237

Query: 195 DRQEAVFLSTMDENRER-------------RMRIRIKVCLALGVVIGCLAIGTVTVHFLE 241
           D QE+  L  +    E+             RMRIR+KV LALGVV+ C+ +G   +HF+E
Sbjct: 238 DLQESHLLRNVKRGVEKESAGSYIIDVKKGRMRIRMKVGLALGVVVLCIGVGVAFMHFVE 297

Query: 242 DMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKR 301
            + W+DS YLSV SVTTVGYGD AFT+L GR FA IWLLVSTLAVARAFLYL E R++KR
Sbjct: 298 RLGWLDSLYLSVMSVTTVGYGDRAFTSLAGRIFASIWLLVSTLAVARAFLYLAEARVDKR 357

Query: 302 NRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLI 361
           +R +AKWVL + MT+ + +AAD+DN+G +SKSE+ IYKLKEM K++EKDILQIC QFD +
Sbjct: 358 HRMLAKWVLGQHMTVSEFLAADIDNNGFVSKSEYAIYKLKEMEKVSEKDILQICQQFDRL 417

Query: 362 DDSKCGKITVADLMYS 377
           D   CGKIT+ADLM S
Sbjct: 418 DTGNCGKITLADLMES 433

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
TAIR|locus:2117681	436	KCO6 "Ca2+ activated outward r	0.801	0.694	0.517	2.3e-78
TAIR|locus:2141375	408	KCO5 "Ca2+ activated outward r	0.433	0.401	0.591	4.6e-76
UNIPROTKB|Q8LIN5	349	TPKB "Two pore potassium chann	0.685	0.742	0.412	5.1e-51
TAIR|locus:2162162	363	KCO1 "CA2+ ACTIVATED OUTWARD R	0.822	0.856	0.365	1.7e-50
UNIPROTKB|Q850M0	347	TPKA "Two pore potassium chann	0.687	0.749	0.389	2e-49
TAIR|locus:2170423	443	KCO2 "Ca2+ activated outward r	0.534	0.455	0.518	3.3e-47
TAIR|locus:2196155	284	TPK4 [Arabidopsis thaliana (ta	0.558	0.742	0.423	8.6e-47
TAIR|locus:2170413	260	KCO3 "AT5G46360" [Arabidopsis	0.478	0.696	0.473	1.3e-38
UNIPROTKB|Q8E842	131	Q8E842 "Potassium/ion transpor	0.248	0.717	0.333	1.2e-08
TIGR_CMR|SO_A0098	131	SO_A0098 "potassium/ion transp	0.248	0.717	0.333	1.2e-08

TAIR|locus:2117681 KCO6 "Ca2+ activated outward rectifying K+ channel 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 165/319 (51%), Positives = 221/319 (69%)

Query:    71 KGKLTRRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVLYILAGIVIY-LT 129
             +G    RS +AP++        P  +  + P +++  +V+QAF  LV+Y+  G++IY L 
Sbjct:   114 QGHALHRSKTAPAMAVINDLHHP--IRQKDPTETSRSVVRQAFALLVVYLSLGVLIYWLN 171

Query:   130 NGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGL 189
               ++    T   VD LYF +VT+CTIGYGDI P++  TKLF+ +F+L+GFGF+DILL+G+
Sbjct:   172 RDHYVVNQTHPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSGM 231

Query:   190 VTYICDRQEAVFLSTM---DENRERR----------MRIRIKVCLALGVVIGCLAIGTVT 236
             V+Y+ D QE+  L +    DE  +RR          MRIR+KV LALGVV+ C+A+G   
Sbjct:   232 VSYVLDLQESYMLDSAKRRDEPEKRRSYIIDVKKGRMRIRLKVALALGVVVLCIAVGVGI 291

Query:   237 VHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTEL 296
             +HF+E++ W+DSFYLSV SVTTVGYGD AF TL GR FA IWLLVSTLAVARAFLYL E 
Sbjct:   292 MHFIEEIGWLDSFYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLVSTLAVARAFLYLAEA 351

Query:   297 RIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICN 356
             R++KRNR  AK VL + M++    AAD+DN+G +SK+E+VIYKLKEM KI +KDIL I  
Sbjct:   352 RVDKRNRERAKKVLCETMSVSQFFAADIDNNGCVSKAEYVIYKLKEMEKITDKDILPISK 411

Query:   357 QFDLIDDSKCGKITVADLM 375
             QFD +D    GKIT+ DL+
Sbjct:   412 QFDKLDRCSNGKITLLDLL 430

GO:0005267 "potassium channel activity" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2141375 KCO5 "Ca2+ activated outward rectifying K+ channel 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
 Identities = 97/164 (59%), Positives = 128/164 (78%)

Query:   212 RMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTG 271
             RMRIR+KVCLAL VV+ C+ +G + +HF+E++ +VDS YLSV SVTTVGYGD AF TL G
Sbjct:   241 RMRIRMKVCLALCVVVLCIGVGALVLHFVEELGFVDSVYLSVMSVTTVGYGDRAFKTLQG 300

Query:   272 RCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSIS 331
             R FA +WLLVSTLAVARAFLYL E RI++R+R+  K  L +++T+ DL+ AD    G IS
Sbjct:   301 RLFAAVWLLVSTLAVARAFLYLAEARIDRRHRKAVKLALNREITVDDLLKADTYQHGFIS 360

Query:   332 KSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375
             KSE+++ KLKEMGKI +KDI Q+  QF+ +D ++ GKIT+ DL+
Sbjct:   361 KSEYIVLKLKEMGKITQKDIDQVVIQFEKLDPNQIGKITLPDLL 404

GO:0005267 "potassium channel activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

UNIPROTKB|Q8LIN5 TPKB "Two pore potassium channel b" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 109/264 (41%), Positives = 163/264 (61%)

Query:   116 LVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVF 174
             LV Y+L G I  YL   +  G  T + +DALYF VVT+ T+GYGD+VP +   KL  C F
Sbjct:    72 LVAYLLLGTIAFYLAMDHMSGTRTTRALDALYFCVVTMTTVGYGDLVPASDAAKLLACAF 131

Query:   175 ILIGFGFVDILLNGLVTYICDRQEAVFLSTMDEN---RERRM-RIRIKVCLALGVVIGCL 230
             +  G   V   L+    Y+ ++QEA+    +  +   R   M ++R K+  A  +++  +
Sbjct:   132 VFAGVAVVGTFLSKAADYLVEKQEALLFRALHSHTMVRAMEMNKVRYKLYTAGLLLVAAV 191

Query:   231 AIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAF 290
             A GTV +  +E M  VD+FY    +VTT+GYGD +F++  GR FA+ W+ VST+ VA  F
Sbjct:   192 ASGTVVLWKVEGMRAVDAFYCVCATVTTLGYGDRSFSSEGGRAFAVAWITVSTVVVALFF 251

Query:   291 LYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKD 350
             LY  EL  E+R R +A+WVL+++ T  DL AADLD D  +  ++FV+YKLKE+GKI+++D
Sbjct:   252 LYAAELYTERRQRELARWVLRRRTTNMDLEAADLDGDHRVGAADFVLYKLKELGKISQED 311

Query:   351 ILQICNQFDLIDDSKCGKITVADL 374
             I +  ++FD +D    G ++ ADL
Sbjct:   312 ISEFLDEFDNLDADHSGTLSPADL 335

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0030007 "cellular potassium ion homeostasis" evidence=IC

GO:0071805 "potassium ion transmembrane transport" evidence=IDA

TAIR|locus:2162162 KCO1 "CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 121/331 (36%), Positives = 189/331 (57%)

Query:    63 LNIIANLKKGKLTRRSHSAPSVFTQFKEAFP-DSLDPRP---PLKS--TPLIVQQAFIGL 116
             LN   +  + +  RRS SAP     + +    D   P P   P+ S   P + ++  + L
Sbjct:    25 LNSRTSSSRKRRLRRSRSAPRGDCMYNDDVKIDEPPPHPSKIPMFSDLNPNL-RRVIMFL 83

Query:   117 VLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFI 175
              LY+  G +  YL      G  T   VDALYF +VT+ T+GYGD+VP+++ ++L  C F+
Sbjct:    84 ALYLTIGTLCFYLVRDQISGHKTSGVVDALYFCIVTMTTVGYGDLVPNSSASRLLACAFV 143

Query:   176 LIGFGFVDILLNGLVTYICDRQEAVFLSTM---------DENRERRM-RIRIKVCLALGV 225
               G   V  LL+    Y+ ++QEA+ +            D  +E    ++R K C A  +
Sbjct:   144 FSGMVLVGHLLSRAADYLVEKQEALLVRAFHLRQSFGPTDILKELHTNKLRYK-CYATCL 202

Query:   226 VIGCLAI-GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTL 284
             V+  L I GT+ +  +E M  + +FY   ++VTT+GYGD +F +  GR FA+ W+L S++
Sbjct:   203 VLVVLFIVGTIFLVMVEKMPVISAFYCVCSTVTTLGYGDKSFNSEAGRLFAVFWILTSSI 262

Query:   285 AVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMG 344
              +A+ FLY+ EL  E + R + KWVL +++T  DL AADLD DG +  +EF++YKLKEMG
Sbjct:   263 CLAQFFLYVAELNTENKQRALVKWVLTRRITNNDLEAADLDEDGVVGAAEFIVYKLKEMG 322

Query:   345 KIAEKDILQICNQFDLIDDSKCGKITVADLM 375
             KI EKDI  I ++F+ +D  + G +T +D++
Sbjct:   323 KIDEKDISGIMDEFEQLDYDESGTLTTSDIV 353

GO:0005267 "potassium channel activity" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005216 "ion channel activity" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IPI

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0030007 "cellular potassium ion homeostasis" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015269 "calcium-activated potassium channel activity" evidence=IDA

UNIPROTKB|Q850M0 TPKA "Two pore potassium channel a" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 107/275 (38%), Positives = 170/275 (61%)

Query:   114 IGLVL--YILAGIV-IYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
             +GL+L  Y+L G++  Y       GK T + +DALYF VVT+ T+GYGD+VP+   TKL 
Sbjct:    67 VGLLLFIYLLVGVLAFYAVMDEISGKRTNRVLDALYFCVVTMTTVGYGDLVPNNDTTKLL 126

Query:   171 TCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENR---ERRM-------RIRIKVC 220
              C F+ +G   V + ++ +  Y+ ++QE +F   +  N    E +M       RI+ K  
Sbjct:   127 ACAFVFMGMAVVALFVSKVADYLVEKQEVLFFKALHTNLKGGETKMLRAIETNRIKYKFY 186

Query:   221 L-ALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWL 279
               AL +V+  ++ GTV +  +E ++ VDSFY    ++TT+GYGD +F++  GR FA+ W+
Sbjct:   187 TNALLLVLSIIS-GTVFLWKVEKLSLVDSFYCVCATITTLGYGDKSFSSKLGRVFAVFWI 245

Query:   280 LVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYK 339
             + ST+ +A+ F+YL E+  E+R + +A WVL +KMT  DL AADLD+D  +  +EFV+YK
Sbjct:   246 ITSTIIMAQFFMYLAEIYTERRQKMLANWVLTRKMTKMDLEAADLDDDRQVGAAEFVVYK 305

Query:   340 LKEMGKIAEKDILQICNQFDLIDDSKCGKITVADL 374
             LKE+GKI +++I     +F+ +D    G ++  DL
Sbjct:   306 LKELGKINQEEISSFLEEFEKLDVDHSGTLSPYDL 340

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0030007 "cellular potassium ion homeostasis" evidence=IC

GO:0031004 "potassium ion-transporting ATPase complex" evidence=IDA

TAIR|locus:2170423 KCO2 "Ca2+ activated outward rectifying K+ channel 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 110/212 (51%), Positives = 145/212 (68%)

Query:   175 ILIGFGFVDILLNGLVTYICD--RQEAVFLSTMDENR-------ERRMRIRIKVCLALGV 225
             IL+  G V  +L+    Y+ +  R E++ L+  D+ R       + RMRIR+KV LALGV
Sbjct:   222 ILLS-GMVTYVLDLQENYMLETARNESLNLNDRDKVRSYIIDVKKGRMRIRLKVGLALGV 280

Query:   226 VIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLA 285
             V+ CL  G + +HF+E + W+DSFY SV SVTTVGYGD AF TL GR  A +WLLVSTLA
Sbjct:   281 VVLCLGFGVLIMHFVEKIGWLDSFYFSVMSVTTVGYGDRAFNTLAGRLLAAMWLLVSTLA 340

Query:   286 VARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGK 345
             VARA L+L E R++KRNR  AK VL + M++   + AD+D +G +SK+EFVIYKLK+M K
Sbjct:   341 VARAILFLAESRVDKRNRERAKKVLGESMSISQFLDADIDCNGCVSKAEFVIYKLKKMDK 400

Query:   346 IAEKDILQICNQFDLIDDSKCGKITVADLMYS 377
             I EKDI  I  QFD +D +  G+IT+ DL+ S
Sbjct:   401 ITEKDINPIGFQFDKLDRTNSGRITLLDLLES 432

GO:0005267 "potassium channel activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2196155 TPK4 [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
 Identities = 94/222 (42%), Positives = 131/222 (59%)

Query:    90 EAFPDSLDPRPPLKSTPLIVQQAFIGLVLYILAGIVIY-LTNGNFKGKATFKPVDALYFI 148
             E+ P+        KS   I+  A I L++Y+  G+  Y      F G  T   VDA YF 
Sbjct:    16 ESSPEETQVTTVSKSKWTILVLAMILLLVYLTFGVCTYSFFRDQFSGTETNLFVDAFYFS 75

Query:   149 VVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDEN 208
             +VT  T+GYGDIVP T+ TK+ T V +  G  F+D LLN +V+++   QE   L  +++ 
Sbjct:    76 IVTFSTVGYGDIVPSTSTTKILTIVLVSTGVVFLDYLLNRVVSHVLSLQENAILDRINKT 135

Query:   209 RERRMR--------IRIK--VCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTT 258
             R R +R        IR+K  +CLA   V  C+  G + +H  E ++W+DS YLSV SVTT
Sbjct:   136 RNRAIRDHIAEDGKIRLKWKLCLAFCAVGLCVGSGALFLHVFERLDWLDSVYLSVISVTT 195

Query:   259 VGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEK 300
             VGYGD  F T+ GR FA+ WLL+ST+A+A  FLYL E+RI++
Sbjct:   196 VGYGDKTFKTVEGRGFAVFWLLLSTIAMATLFLYLAEMRIDR 237

GO:0005267 "potassium channel activity" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

TAIR|locus:2170413 KCO3 "AT5G46360" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 88/186 (47%), Positives = 120/186 (64%)

Query:   189 LVTYICDRQEAVFLSTMDENRERRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDS 248
             LV Y+      ++  T+D +   +    + V L   VV  C   G + VHF+  + W+DS
Sbjct:    74 LVVYL-SLGVLIYWLTLDSDNAYQTH-PVAVALYFFVVTFC---GFLIVHFVVKIGWLDS 128

Query:   249 FYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKW 308
             F  SV  VTTVG+GD AF T  G   A +WLLVSTLAVARAFL+L + R +KRNR  AK 
Sbjct:   129 FCFSVMMVTTVGFGDRAFNTWLGTFLAAVWLLVSTLAVARAFLFLADARADKRNRERAKK 188

Query:   309 VLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGK 368
             VL + +++    AAD+DNDG +S +EF IYKLK+M KI ++D +QICNQFD +D ++ G+
Sbjct:   189 VLGESISISQFFAADIDNDGRLSLAEFAIYKLKQMEKITQEDFIQICNQFDKLDRTQSGR 248

Query:   369 ITVADL 374
             IT+ DL
Sbjct:   249 ITLVDL 254

GO:0005509 "calcium ion binding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IPI

GO:0006863 "purine nucleobase transport" evidence=RCA

UNIPROTKB|Q8E842 Q8E842 "Potassium/ion transporter, voltage-gated ion channel (VIC) superfamily" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 137 (53.3 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 32/96 (33%), Positives = 56/96 (58%)

Query:   116 LVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFI 175
             ++L++L  I+I  T   +     +  VDALYF V+T+ TIGYGD+VP T  +K+FT +F 
Sbjct:    27 ILLFLLVTILIGSTLF-YSSVEGWSKVDALYFSVMTMSTIGYGDLVPTTDMSKIFTIIFS 85

Query:   176 LIGFG-FVDILLNGLVTYICDRQEAVFLSTMDENRE 210
              +  G FV +    +V  +  +++ +F   + ++ E
Sbjct:    86 FLSIGIFVSLNTKIVVMTLNQKKQKLFDRKLRKDNE 121

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_A0098 SO_A0098 "potassium/ion transporter, voltage-gated ion channel (VIC) superfamily" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 137 (53.3 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 32/96 (33%), Positives = 56/96 (58%)

Query:   116 LVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFI 175
             ++L++L  I+I  T   +     +  VDALYF V+T+ TIGYGD+VP T  +K+FT +F 
Sbjct:    27 ILLFLLVTILIGSTLF-YSSVEGWSKVDALYFSVMTMSTIGYGDLVPTTDMSKIFTIIFS 85

Query:   176 LIGFG-FVDILLNGLVTYICDRQEAVFLSTMDENRE 210
              +  G FV +    +V  +  +++ +F   + ++ E
Sbjct:    86 FLSIGIFVSLNTKIVVMTLNQKKQKLFDRKLRKDNE 121

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SVV6	TPK3_ARATH	No assigned EC number	0.5172	0.8015	0.6949	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	378
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	7e-14
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	1e-10
PRK10537	393	PRK10537, PRK10537, voltage-gated potassium channe	6e-07

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 65.7 bits (161), Expect = 7e-14
 Identities = 33/75 (44%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 116 LVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFI 175
           L+L ++ G V Y       G       DALYF  VTL TIGYGDIVP T   +LFT ++I
Sbjct: 3   LLLVLIFGTVYYSLEEEGWGWDFL---DALYFSFVTLTTIGYGDIVPLTDAGRLFTIIYI 59

Query: 176 LIGFGFVDILLNGLV 190
           LIG     + L  L 
Sbjct: 60  LIGIPLFLLFLAVLG 74

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 225 VVIGCLAIGTVTVHFLED---MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
           +++  L  GTV     E+    +++D+ Y S  ++TT+GYGD    T  GR F II++L+
Sbjct: 2   LLLLVLIFGTVYYSLEEEGWGWDFLDALYFSFVTLTTIGYGDIVPLTDAGRLFTIIYILI 61

Query: 282 STLAVARAFLYLT 294
                      L 
Sbjct: 62  GIPLFLLFLAVLG 74

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 112 AFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFT 171
           +   L+ Y   G  +YL +G F          A YF +VT+ T+GYGDIVP +   +LFT
Sbjct: 143 SITSLLFYSTFG-ALYLGDG-FSPPIE-SLSTAFYFSIVTMSTVGYGDIVPVSESARLFT 199

Query: 172 CVFILIG 178
              I++G
Sbjct: 200 ISVIILG 206

Length = 393

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	378
KOG4404	350	consensus Tandem pore domain K+ channel TASK3/THIK	99.96
KOG1418	433	consensus Tandem pore domain K+ channel [Inorganic	99.91
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.44
KOG1419	654	consensus Voltage-gated K+ channel KCNQ [Inorganic	99.44
KOG3713	477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.44
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.39
KOG1545	507	consensus Voltage-gated shaker-like K+ channel KCN	99.33
KOG1419	654	consensus Voltage-gated K+ channel KCNQ [Inorganic	99.3
PRK10537	393	voltage-gated potassium channel; Provisional	99.27
KOG3713	477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.25
KOG4404	350	consensus Tandem pore domain K+ channel TASK3/THIK	99.2
KOG1420	1103	consensus Ca2+-activated K+ channel Slowpoke, alph	99.08
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.0
KOG1545	507	consensus Voltage-gated shaker-like K+ channel KCN	98.98
KOG4390	632	consensus Voltage-gated A-type K+ channel KCND [In	98.96
PRK10537	393	voltage-gated potassium channel; Provisional	98.95
KOG1420	1103	consensus Ca2+-activated K+ channel Slowpoke, alph	98.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	98.8
KOG1418	433	consensus Tandem pore domain K+ channel [Inorganic	98.71
KOG4390	632	consensus Voltage-gated A-type K+ channel KCND [In	98.57
KOG0498	727	consensus K+-channel ERG and related proteins, con	98.37
KOG0498	727	consensus K+-channel ERG and related proteins, con	98.36
KOG3193	1087	consensus K+ channel subunit [Inorganic ion transp	98.15
KOG3193	1087	consensus K+ channel subunit [Inorganic ion transp	98.02
KOG3684	489	consensus Ca2+-activated K+ channel proteins (inte	97.9
KOG3684	489	consensus Ca2+-activated K+ channel proteins (inte	97.86
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	97.61
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	97.38
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	97.26
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	97.04
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	96.52
KOG3827	400	consensus Inward rectifier K+ channel [Inorganic i	96.18
PF13499	66	EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A	94.86
PF00520	200	Ion_trans: Ion transport protein calcium channel s	94.82
KOG0027	151	consensus Calmodulin and related proteins (EF-Hand	93.61
KOG3827	400	consensus Inward rectifier K+ channel [Inorganic i	93.46
TIGR00933	390	2a38 potassium uptake protein, TrkH family. The pr	93.3
PRK10750	483	potassium transporter; Provisional	93.29
PF13202	25	EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ	92.86
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	92.62
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	92.31
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	91.29
PF00036	29	EF-hand_1: EF hand; InterPro: IPR018248 Many calci	91.24
PF00060	148	Lig_chan: Ligand-gated ion channel; InterPro: IPR0	90.12
PF00520	200	Ion_trans: Ion transport protein calcium channel s	90.02
PF13405	31	EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J	89.24
PF13833	54	EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A	86.81
smart00027	96	EH Eps15 homology domain. Pair of EF hand motifs t	86.58
cd00052	67	EH Eps15 homology domain; found in proteins implic	86.24
TIGR00933	390	2a38 potassium uptake protein, TrkH family. The pr	85.65
cd05029	88	S-100A6 S-100A6: S-100A6 domain found in proteins	83.52
PRK05482	559	potassium-transporting ATPase subunit A; Provision	83.29
KOG0044	193	consensus Ca2+ sensor (EF-Hand superfamily) [Signa	82.39
cd05022	89	S-100A13 S-100A13: S-100A13 domain found in protei	82.31
PF13499	66	EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A	81.63
PRK10750	483	potassium transporter; Provisional	81.53
cd05026	93	S-100Z S-100Z: S-100Z domain found in proteins sim	80.85
PTZ00183	158	centrin; Provisional	80.27

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.9e-28  Score=228.70  Aligned_cols=183  Identities=21%  Similarity=0.378  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHHhhhh-hccc---------------------------------------ccCCCCCCCccceeeeeee
Q 040114          111 QAFIGLVLYILAGIVIY-LTNG---------------------------------------NFKGKATFKPVDALYFIVV  150 (378)
Q Consensus       111 ~~~~~l~~~l~~g~~~~-~~~~---------------------------------------~~~~~~~~~~~~a~yf~~v  150 (378)
                      +++++.+.|+++|+.+| ..|.                                       ..+....|.|..||||+.+
T Consensus        11 ~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~GaFYFa~T   90 (350)
T KOG4404|consen   11 LLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGAFYFATT   90 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcceEEEEE
Confidence            35567788999999999 4331                                       1123346999999999999


Q ss_pred             eeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhhhhHHHHHhhhhhhhhhhh---hhHHHHHHHHHHHHH
Q 040114          151 TLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERR---MRIRIKVCLALGVVI  227 (378)
Q Consensus       151 tltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~l~r~~~~~~~~~---~~~~~~~~~~~~~~i  227 (378)
                      .+||||||.-.|.|..||+||++|.++|+++..+++..++..+.... ..++++.++..-.+   ...-..+...+...+
T Consensus        91 VItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~-ayil~~~r~~~~~r~~~~S~~~l~~i~~~~~~  169 (350)
T KOG4404|consen   91 VITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFV-AYILRRCRRRLGRRRWDVSVYNLVLILFTACI  169 (350)
T ss_pred             EEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888876665432 23334443322111   111122333344456


Q ss_pred             hhhhhhcceeecccccccccceeEEEEEEeccccCCcccCCc--------chhHHHHHHHHHHHHHHHHHHHHHH
Q 040114          228 GCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTL--------TGRCFAIIWLLVSTLAVARAFLYLT  294 (378)
Q Consensus       228 ~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~p~t~--------~gr~f~~~~il~g~~~va~~~~~l~  294 (378)
                      ++++.|+.+|..+|+|+|+||+||||+|+|||||||+++...        ..+.|..+||++|+.+++.+++.+.
T Consensus       170 ~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~Nllv  244 (350)
T KOG4404|consen  170 LLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLV  244 (350)
T ss_pred             HHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHH
Confidence            678899999999999999999999999999999999998643        4588999999999999988887665

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]

Probab=99.91  E-value=6.2e-25  Score=219.71  Aligned_cols=158  Identities=28%  Similarity=0.520  Sum_probs=129.4

Q ss_pred             cCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhhhhHHHHHhh-----hhhh
Q 040114          133 FKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLS-----TMDE  207 (378)
Q Consensus       133 ~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~l~r-----~~~~  207 (378)
                      ....+.|+|.+|+|||++++||||||+++|.|..||++|++|+++|||++.++++.+++++.+.......+     ....
T Consensus       108 ~~~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~~~~~~~~~~~~  187 (433)
T KOG1418|consen  108 SPDTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLYRRRHVELQRDR  187 (433)
T ss_pred             CCCCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            34566799999999999999999999999999999999999999999999999999999888776654431     0000


Q ss_pred             hhh---------------hhhhH---HHHHHHHHHHHHhhhhhhcceeecccccccccceeEEEEEEeccccCCcccCCc
Q 040114          208 NRE---------------RRMRI---RIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTL  269 (378)
Q Consensus       208 ~~~---------------~~~~~---~~~~~~~~~~~i~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~p~t~  269 (378)
                      .+.               .....   +..+..++.++++++..|+.++...|+|+|++|+||+++|+|||||||++|.+.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~  267 (433)
T KOG1418|consen  188 IRSNLRRSIGLRNRSVELGIELLDELRFILLLLLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTL  267 (433)
T ss_pred             hhhhhhccccchhcccccchhhccCcceehhhhheeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCC
Confidence            000               00111   344555566667778899999999999999999999999999999999999998


Q ss_pred             chh--------HHHHHHHHHHHHHHHHHH
Q 040114          270 TGR--------CFAIIWLLVSTLAVARAF  290 (378)
Q Consensus       270 ~gr--------~f~~~~il~g~~~va~~~  290 (378)
                      .++        .+..+++++|...++...
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  296 (433)
T KOG1418|consen  268 LGRFRREELVDPLASVWILSGLALLALVL  296 (433)
T ss_pred             cceeeccccccchhHHHHHhhhhHHHHHh
Confidence            877        688899999988888776

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.44  E-value=8.1e-15  Score=113.97  Aligned_cols=77  Identities=35%  Similarity=0.687  Sum_probs=62.5

Q ss_pred             HHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhh
Q 040114          115 GLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYIC  194 (378)
Q Consensus       115 ~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~  194 (378)
                      +++++++.|++.+...   ++.+.|++.|++||+++|+|||||||++|.++.||++++++++.|++++++.++.+.+.+.
T Consensus         2 ~~~~~l~~~~~~~~~~---~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~   78 (79)
T PF07885_consen    2 ILLLVLAFGAIFFYIS---EGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHT---TSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeeHHHHHHHHHH---HhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4556667777777442   2256899999999999999999999999999999999999999999999999988876654

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]

Probab=99.44  E-value=5.3e-14  Score=140.60  Aligned_cols=106  Identities=28%  Similarity=0.497  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhcccccCC----CCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhh
Q 040114          105 TPLIVQQAFIGLVLYILAGIVIYLTNGNFKG----KATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFG  180 (378)
Q Consensus       105 ~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~----~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~  180 (378)
                      ++.++..++|.+++.++.+.++|+.|....+    .+.-+|.||+||.++|+|||||||.+|+|+.||+++++|.++|+.
T Consensus       230 ~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiS  309 (654)
T KOG1419|consen  230 SKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGIS  309 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHH
Confidence            4567888899999999999999999876433    344679999999999999999999999999999999999999999


Q ss_pred             hhhhhhcchhh-hhhhhHHHHHhhhhhhhhh
Q 040114          181 FVDILLNGLVT-YICDRQEAVFLSTMDENRE  210 (378)
Q Consensus       181 ~~~~~~~~~~~-~l~~~~~~~l~r~~~~~~~  210 (378)
                      +|++..+.++. +.++.|+++-+++++++++
T Consensus       310 FFALPAGILGSGfALKVQeq~RQKHf~rrr~  340 (654)
T KOG1419|consen  310 FFALPAGILGSGFALKVQEQHRQKHFNRRRN  340 (654)
T ss_pred             HHhcccccccchhhhhhHHHHHHHHHHhhcc
Confidence            99999888876 4456677766666665543

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]

Probab=99.44  E-value=8.4e-14  Score=138.57  Aligned_cols=96  Identities=21%  Similarity=0.288  Sum_probs=83.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhh
Q 040114          103 KSTPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFV  182 (378)
Q Consensus       103 ~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~  182 (378)
                      .+.+.+..+++++.+...++++++|+.|+........+.+-++|||++|||||||||.+|.|..||+++...++.||.++
T Consensus       340 ~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvl  419 (477)
T KOG3713|consen  340 RSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVL  419 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHh
Confidence            34556777777888888999999999998777777889999999999999999999999999999999999999999999


Q ss_pred             hhhhcchhhhhhhhHH
Q 040114          183 DILLNGLVTYICDRQE  198 (378)
Q Consensus       183 ~~~~~~~~~~l~~~~~  198 (378)
                      ++.++.+++.+..-+.
T Consensus       420 AlPItiIv~nF~~~y~  435 (477)
T KOG3713|consen  420 ALPITIIVNNFSMYYS  435 (477)
T ss_pred             hcchHhHhhhHHHHHH
Confidence            9999988877664433

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.39  E-value=4.3e-14  Score=109.90  Aligned_cols=70  Identities=33%  Similarity=0.549  Sum_probs=57.9

Q ss_pred             hhhhhhcceeec---ccccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          228 GCLAIGTVTVHF---LEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELR  297 (378)
Q Consensus       228 ~~~~~g~~~~~~---~e~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~  297 (378)
                      +++..|+..++.   .|+|++.||+||+++|+|||||||++|.++.||++++++++.|+.+++..++.+++..
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l   77 (79)
T PF07885_consen    5 LVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVL   77 (79)
T ss_dssp             HHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344555555555   5679999999999999999999999999999999999999999999999999888764

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]

Probab=99.33  E-value=5.8e-13  Score=127.31  Aligned_cols=91  Identities=23%  Similarity=0.308  Sum_probs=80.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhh
Q 040114          103 KSTPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFV  182 (378)
Q Consensus       103 ~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~  182 (378)
                      .+.+.+-.+++++++..++++..+|+.|.........+..|||||++||||||||||.+|.|..||++..++++.|+..+
T Consensus       356 aSmrElgLLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTi  435 (507)
T KOG1545|consen  356 ASMRELGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTI  435 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEe
Confidence            45667778888888888899999998887766667788999999999999999999999999999999999999999999


Q ss_pred             hhhhcchhhhh
Q 040114          183 DILLNGLVTYI  193 (378)
Q Consensus       183 ~~~~~~~~~~l  193 (378)
                      ++.+..+++.+
T Consensus       436 ALPVPVIVsNF  446 (507)
T KOG1545|consen  436 ALPVPVIVSNF  446 (507)
T ss_pred             cccccEEEecc
Confidence            99888887654

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]

Probab=99.30  E-value=3.6e-13  Score=134.73  Aligned_cols=80  Identities=23%  Similarity=0.247  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHhhhhhhcceeecccc-----------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHH
Q 040114          217 IKVCLALGVVIGCLAIGTVTVHFLED-----------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLA  285 (378)
Q Consensus       217 ~~~~~~~~~~i~~~~~g~~~~~~~e~-----------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~  285 (378)
                      +.+...+-+-++++++.+.+.|..|.           -+|-||+||.++|+|||||||.+|.|+.||+++.++.++|+.+
T Consensus       231 ~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSF  310 (654)
T KOG1419|consen  231 KELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISF  310 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHH
Confidence            33444444445556666666676663           3789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 040114          286 VARAFLYLTEL  296 (378)
Q Consensus       286 va~~~~~l~~~  296 (378)
                      |+..-+.+++-
T Consensus       311 FALPAGILGSG  321 (654)
T KOG1419|consen  311 FALPAGILGSG  321 (654)
T ss_pred             Hhcccccccch
Confidence            99877766654

>PRK10537 voltage-gated potassium channel; Provisional

Probab=99.27  E-value=2.4e-11  Score=121.59  Aligned_cols=76  Identities=24%  Similarity=0.343  Sum_probs=62.2

Q ss_pred             Hhhhhhhcceeecccc------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          227 IGCLAIGTVTVHFLED------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEK  300 (378)
Q Consensus       227 i~~~~~g~~~~~~~e~------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~~~  300 (378)
                      ..++..|+.+++.+|+      +++.||+||+++|+|||||||++|.+..||+|++++++.|++++++.++.+....+++
T Consensus       145 ~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~~  224 (393)
T PRK10537        145 TSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVIRG  224 (393)
T ss_pred             HHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566665555553      6899999999999999999999999999999999999999999999888777655554


Q ss_pred             HH
Q 040114          301 RN  302 (378)
Q Consensus       301 ~~  302 (378)
                      +.
T Consensus       225 ~l  226 (393)
T PRK10537        225 NL  226 (393)
T ss_pred             HH
Confidence            43

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]

Probab=99.25  E-value=4.1e-11  Score=119.58  Aligned_cols=80  Identities=25%  Similarity=0.341  Sum_probs=62.1

Q ss_pred             HHHHHHHHhhhhhhcceeecccc------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 040114          220 CLALGVVIGCLAIGTVTVHFLED------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYL  293 (378)
Q Consensus       220 ~~~~~~~i~~~~~g~~~~~~~e~------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l  293 (378)
                      ++++.+.+.+.++++++|+...+      .+..-++||+++|||||||||.+|.|..||+++...++.|+.++|..+..+
T Consensus       347 lLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiI  426 (477)
T KOG3713|consen  347 LLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITII  426 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhH
Confidence            33444445555666666654322      245669999999999999999999999999999999999999999988777


Q ss_pred             HHHHHH
Q 040114          294 TELRIE  299 (378)
Q Consensus       294 ~~~~~~  299 (378)
                      .+.+..
T Consensus       427 v~nF~~  432 (477)
T KOG3713|consen  427 VNNFSM  432 (477)
T ss_pred             hhhHHH
Confidence            766554

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]

Probab=99.20  E-value=2.1e-11  Score=115.51  Aligned_cols=81  Identities=33%  Similarity=0.538  Sum_probs=68.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeeccccccc--------CccCceeeehhh
Q 040114          104 STPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPD--------TTFTKLFTCVFI  175 (378)
Q Consensus       104 ~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~--------t~~g~~~~~~~~  175 (378)
                      +...++.....+-++.++.|+.+|      +..|+|+|+||+|||++|+|||||||.++.        .+..+.+..+|+
T Consensus       156 S~~~l~~i~~~~~~~~i~~gaa~f------s~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fI  229 (350)
T KOG4404|consen  156 SVYNLVLILFTACILLICCGAAMF------SSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFI  229 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHh------hcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHH
Confidence            344556666667778888899898      777999999999999999999999999986        357788999999


Q ss_pred             hhhhhhhhhhhcchh
Q 040114          176 LIGFGFVDILLNGLV  190 (378)
Q Consensus       176 l~Gi~~~~~~~~~~~  190 (378)
                      ++|+.+++.+++.++
T Consensus       230 L~Gl~vi~a~~Nllv  244 (350)
T KOG4404|consen  230 LLGLCVIYALLNLLV  244 (350)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988887665

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.08  E-value=8.4e-10  Score=111.09  Aligned_cols=81  Identities=25%  Similarity=0.436  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHhhhhhhcceeecccc-------------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHH
Q 040114          217 IKVCLALGVVIGCLAIGTVTVHFLED-------------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVST  283 (378)
Q Consensus       217 ~~~~~~~~~~i~~~~~g~~~~~~~e~-------------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~  283 (378)
                      .++..++.+++.+++.++.+++.+|+             .+|++++||.++|++||||||+.-.|..||+|.+|+++.|+
T Consensus       248 irl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~gl  327 (1103)
T KOG1420|consen  248 IRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGL  327 (1103)
T ss_pred             hhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHH
Confidence            44666777888889999999999984             47999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 040114          284 LAVARAFLYLTELR  297 (378)
Q Consensus       284 ~~va~~~~~l~~~~  297 (378)
                      +.+|..+..+.++.
T Consensus       328 amfasyvpeiieli  341 (1103)
T KOG1420|consen  328 AMFASYVPEIIELI  341 (1103)
T ss_pred             HHHHhhhHHHHHHH
Confidence            99998888888763

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.00  E-value=8.9e-11  Score=128.41  Aligned_cols=90  Identities=22%  Similarity=0.490  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhccccc-CCCCCC---------------CccceeeeeeeeeeeeecccccccCccCcee
Q 040114          107 LIVQQAFIGLVLYILAGIVIYLTNGNF-KGKATF---------------KPVDALYFIVVTLCTIGYGDIVPDTTFTKLF  170 (378)
Q Consensus       107 ~~~~~~~~~l~~~l~~g~~~~~~~~~~-~~~~~~---------------~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~  170 (378)
                      .+++++.+++++.+++||++|+..... ....+|               .|..|+||+++|||||||||++|.|+.++++
T Consensus       201 ~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~  280 (823)
T PLN03192        201 RCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIF  280 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHH
Confidence            456667777788899999999654321 112233               1566999999999999999999999999999


Q ss_pred             eehhhhhhhhhhhhhhcchhhhhhhh
Q 040114          171 TCVFILIGFGFVDILLNGLVTYICDR  196 (378)
Q Consensus       171 ~~~~~l~Gi~~~~~~~~~~~~~l~~~  196 (378)
                      +++++++|+.++++.++.+++.+.+.
T Consensus       281 ~i~~ml~g~~~~a~~ig~i~~li~~~  306 (823)
T PLN03192        281 IIFYMLFNLGLTAYLIGNMTNLVVEG  306 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998877543

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]

Probab=98.98  E-value=6e-10  Score=106.93  Aligned_cols=79  Identities=23%  Similarity=0.330  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHhhhhhhcceeecccc------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHH
Q 040114          217 IKVCLALGVVIGCLAIGTVTVHFLED------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAF  290 (378)
Q Consensus       217 ~~~~~~~~~~i~~~~~g~~~~~~~e~------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~  290 (378)
                      -.-++++.+++.++++++.+|....+      -+..|||||+++|||||||||.+|.|..||+...++.+.|+..+|..+
T Consensus       360 ElgLLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPV  439 (507)
T KOG1545|consen  360 ELGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPV  439 (507)
T ss_pred             HHHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccc
Confidence            33455566667777777766654432      367899999999999999999999999999999999999999888877


Q ss_pred             HHHHH
Q 040114          291 LYLTE  295 (378)
Q Consensus       291 ~~l~~  295 (378)
                      ..+.+
T Consensus       440 PVIVs  444 (507)
T KOG1545|consen  440 PVIVS  444 (507)
T ss_pred             cEEEe
Confidence            65553

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]

Probab=98.96  E-value=2.1e-10  Score=110.83  Aligned_cols=88  Identities=22%  Similarity=0.346  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhc
Q 040114          108 IVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLN  187 (378)
Q Consensus       108 ~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~  187 (378)
                      +-.+++.+.+.++++++++|+.++..+.....+...||||.++||||.||||.+|.|.+||+|..+..+-|+.++++.+.
T Consensus       324 LGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVP  403 (632)
T KOG4390|consen  324 LGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVP  403 (632)
T ss_pred             HhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEecccc
Confidence            34455666678889999999999988888888999999999999999999999999999999999999999999999888


Q ss_pred             chhhhhhh
Q 040114          188 GLVTYICD  195 (378)
Q Consensus       188 ~~~~~l~~  195 (378)
                      .+++.+.+
T Consensus       404 vIVSNFSR  411 (632)
T KOG4390|consen  404 VIVSNFSR  411 (632)
T ss_pred             EEEechhH
Confidence            88776544

>PRK10537 voltage-gated potassium channel; Provisional

Probab=98.95  E-value=3.6e-10  Score=113.20  Aligned_cols=81  Identities=23%  Similarity=0.385  Sum_probs=63.8

Q ss_pred             HHHHHHHhhhh-hcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhhh
Q 040114          117 VLYILAGIVIY-LTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICD  195 (378)
Q Consensus       117 ~~~l~~g~~~~-~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~  195 (378)
                      ...++.+++.+ +.++++. ...+++.||+||+++|+||+||||++|.|+.||++++++++.|++++++.++.+...+++
T Consensus       145 ~~l~~~~~~g~~~~~~~f~-~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~  223 (393)
T PRK10537        145 TSLLFYSTFGALYLGDGFS-PPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVIR  223 (393)
T ss_pred             HHHHHHHHHHHHHHccccC-cCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555533 3444443 346899999999999999999999999999999999999999999999988888776654


Q ss_pred             hHH
Q 040114          196 RQE  198 (378)
Q Consensus       196 ~~~  198 (378)
                      .+.
T Consensus       224 ~~l  226 (393)
T PRK10537        224 GNL  226 (393)
T ss_pred             HHH
Confidence            433

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.94  E-value=3.7e-10  Score=113.62  Aligned_cols=118  Identities=25%  Similarity=0.406  Sum_probs=92.6

Q ss_pred             ccchhhcccCcchhhccccccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhhhcccc------cCCCCCCCccce
Q 040114           71 KGKLTRRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVLYILAGIVIYLTNGN------FKGKATFKPVDA  144 (378)
Q Consensus        71 ~~~r~~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~------~~~~~~~~~~~a  144 (378)
                      |--|-.|-.+.|++....+-.         ..+++.++..++.+.+.+++..+.++.+.|+.      +.+....+|+++
T Consensus       222 rflralrlmtvpdilqylnil---------ktsssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~c  292 (1103)
T KOG1420|consen  222 RFLRALRLMTVPDILQYLNIL---------KTSSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWEC  292 (1103)
T ss_pred             HHHHHHHhccHHHHHHHHHHH---------hccchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhhe
Confidence            344556677888876544321         11345667888888888999998888888753      333444689999


Q ss_pred             eeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhhhhH
Q 040114          145 LYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQ  197 (378)
Q Consensus       145 ~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~~  197 (378)
                      .||.++||+||||||++..|..||+|.++|++.|+++++..+..+.+.+-.++
T Consensus       293 vyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~  345 (1103)
T KOG1420|consen  293 VYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRK  345 (1103)
T ss_pred             eeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHcccc
Confidence            99999999999999999999999999999999999999999888887765443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=98.80  E-value=5.9e-09  Score=114.18  Aligned_cols=55  Identities=31%  Similarity=0.483  Sum_probs=50.5

Q ss_pred             cccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          245 WVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIE  299 (378)
Q Consensus       245 ~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~~  299 (378)
                      |..|+||+++|+|||||||++|.|..+++|+++++++|++++++.++.++++..+
T Consensus       251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~  305 (823)
T PLN03192        251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVE  305 (823)
T ss_pred             HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3448999999999999999999999999999999999999999999999987544

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]

Probab=98.71  E-value=1.2e-08  Score=101.96  Aligned_cols=59  Identities=25%  Similarity=0.450  Sum_probs=54.1

Q ss_pred             cccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          241 EDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIE  299 (378)
Q Consensus       241 e~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~~  299 (378)
                      +.|+|.+|+||+++++||||||+++|.|..||+|+++|.++|+.++..+++.+++...+
T Consensus       112 ~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~  170 (433)
T KOG1418|consen  112 QQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLAD  170 (433)
T ss_pred             cceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            35999999999999999999999999999999999999999999998888888876444

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]

Probab=98.57  E-value=4.6e-09  Score=101.73  Aligned_cols=75  Identities=23%  Similarity=0.395  Sum_probs=60.9

Q ss_pred             HHHHHHHHhhhhhhcceeecccc------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 040114          220 CLALGVVIGCLAIGTVTVHFLED------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYL  293 (378)
Q Consensus       220 ~~~~~~~i~~~~~g~~~~~~~e~------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l  293 (378)
                      .+++.+...++++++++|+...+      -+...||||+++|+||+||||.+|.|..|++|..++-+.|+.++|..+..+
T Consensus       326 FLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvI  405 (632)
T KOG4390|consen  326 FLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVI  405 (632)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEE
Confidence            34455566677888888887664      245679999999999999999999999999999999999998887765444


Q ss_pred             H
Q 040114          294 T  294 (378)
Q Consensus       294 ~  294 (378)
                      .
T Consensus       406 V  406 (632)
T KOG4390|consen  406 V  406 (632)
T ss_pred             E
Confidence            3

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.37  E-value=1.4e-07  Score=100.07  Aligned_cols=90  Identities=24%  Similarity=0.334  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccC---CCC-CC------------------------Cccceeeeeeeeeeeeeccc
Q 040114          108 IVQQAFIGLVLYILAGIVIYLTNGNFK---GKA-TF------------------------KPVDALYFIVVTLCTIGYGD  159 (378)
Q Consensus       108 ~~~~~~~~l~~~l~~g~~~~~~~~~~~---~~~-~~------------------------~~~~a~yf~~vtltTvGyGd  159 (378)
                      ...++...+++.++.||++|+......   ..+ +|                        .|..|+||+++||||+|||+
T Consensus       234 ~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~  313 (727)
T KOG0498|consen  234 AALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGL  313 (727)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCc
Confidence            446667777888999999995432111   111 11                        25679999999999999999


Q ss_pred             ccccCccCceeeehhhhhhhhhhhhhhcchhhhhhhhH
Q 040114          160 IVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQ  197 (378)
Q Consensus       160 i~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~~  197 (378)
                      ..|.++..++|+++++++|+.+++++|+++..++....
T Consensus       314 ~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~t  351 (727)
T KOG0498|consen  314 VHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLT  351 (727)
T ss_pred             cCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHh
Confidence            99999999999999999999999999999999887543

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.36  E-value=3.3e-07  Score=97.33  Aligned_cols=97  Identities=21%  Similarity=0.385  Sum_probs=70.1

Q ss_pred             cccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhccCC
Q 040114          245 WVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIE---------KRNRRIAKWVLQKKMT  315 (378)
Q Consensus       245 ~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~~---------~~~r~~~~~il~~~~~  315 (378)
                      |.-|+||++.|+||+||||.+|.+..-++|++++|++|.+++|+++++++.+...         .+.|..+.|+-.+++.
T Consensus       295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP  374 (727)
T KOG0498|consen  295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLP  374 (727)
T ss_pred             HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCC
Confidence            4458999999999999999999999999999999999999999999999876433         1234555666544432


Q ss_pred             cCCeeeeecCCCCCcccchHHHHHHHHhCCCCHHHH
Q 040114          316 LGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDI  351 (378)
Q Consensus       316 ~~~l~~~d~d~d~~v~~~e~~~~~L~~~g~is~edi  351 (378)
                      ..      +    .-...++..+++...+-+++|++
T Consensus       375 ~~------L----RqRi~~y~q~kw~~t~Gvdee~l  400 (727)
T KOG0498|consen  375 PD------L----RQRIRRYEQYKWLATRGVDEEEL  400 (727)
T ss_pred             HH------H----HHHHHHHHHHHHhhccCcCHHHH
Confidence            21      0    11134455566666656666665

>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]

Probab=98.15  E-value=1e-05  Score=81.75  Aligned_cols=85  Identities=20%  Similarity=0.355  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHhhhhhhcceeeccc-----ccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHH
Q 040114          217 IKVCLALGVVIGCLAIGTVTVHFLE-----DMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFL  291 (378)
Q Consensus       217 ~~~~~~~~~~i~~~~~g~~~~~~~e-----~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~  291 (378)
                      +.+.+++..+..+++.|.+.+.+++     ..+++.++||+++|++||||||.+|.-++..+..++.|.+.++++..-+.
T Consensus       185 ~ql~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~  264 (1087)
T KOG3193|consen  185 RQLLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLD  264 (1087)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHH
Confidence            3344445545555566666666654     36889999999999999999999999999999999998888888877777


Q ss_pred             HHHHHHHHHH
Q 040114          292 YLTELRIEKR  301 (378)
Q Consensus       292 ~l~~~~~~~~  301 (378)
                      .++..+.|++
T Consensus       265 ~l~~tw~erq  274 (1087)
T KOG3193|consen  265 ELGQTWSERQ  274 (1087)
T ss_pred             HHHHHHHHHh
Confidence            7776666654

>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]

Probab=98.02  E-value=4.3e-06  Score=84.42  Aligned_cols=64  Identities=28%  Similarity=0.517  Sum_probs=48.8

Q ss_pred             CCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhhhhH
Q 040114          134 KGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQ  197 (378)
Q Consensus       134 ~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~~  197 (378)
                      .+....+.+.++||.++|++||||||.+|.-++.++..++.+.+.+.++..-+..++....++|
T Consensus       211 a~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~tw~erq  274 (1087)
T KOG3193|consen  211 ARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQTWSERQ  274 (1087)
T ss_pred             ccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence            3445678999999999999999999999999999988777766666665555555554444443

>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]

Probab=97.90  E-value=6.2e-06  Score=82.04  Aligned_cols=59  Identities=25%  Similarity=0.490  Sum_probs=53.0

Q ss_pred             CCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhh
Q 040114          136 KATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYIC  194 (378)
Q Consensus       136 ~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~  194 (378)
                      ....+|.++.|+..+|+.+|||||++|.|..||.+|++-.++|.++.+++++.+..-+.
T Consensus       283 ~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLe  341 (489)
T KOG3684|consen  283 DVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE  341 (489)
T ss_pred             hhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence            36677999999999999999999999999999999999999999999998888776543

>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]

Probab=97.86  E-value=5e-06  Score=82.68  Aligned_cols=69  Identities=20%  Similarity=0.308  Sum_probs=56.8

Q ss_pred             hhhhhhcceeecccc--------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          228 GCLAIGTVTVHFLED--------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTEL  296 (378)
Q Consensus       228 ~~~~~g~~~~~~~e~--------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~  296 (378)
                      .++++.++++...|.        -.|.++.|+..+|+-+|||||++|.|..||..+++.-++|.++.+..++.++..
T Consensus       263 ~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRK  339 (489)
T KOG3684|consen  263 SLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARK  339 (489)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHH
Confidence            344555555555552        358999999999999999999999999999999999999999988888877744

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.61  E-value=6.3e-06  Score=81.04  Aligned_cols=92  Identities=18%  Similarity=0.294  Sum_probs=61.6

Q ss_pred             ChHHH-HHHHHHHHHHHHHHHhhhhhcc---cccCC------C-----CCCCccceeeeeeeeeeeeeccc--ccccCcc
Q 040114          104 STPLI-VQQAFIGLVLYILAGIVIYLTN---GNFKG------K-----ATFKPVDALYFIVVTLCTIGYGD--IVPDTTF  166 (378)
Q Consensus       104 ~~~~~-~~~~~~~l~~~l~~g~~~~~~~---~~~~~------~-----~~~~~~~a~yf~~vtltTvGyGd--i~P~t~~  166 (378)
                      +|+.. +..+...++.++++|.++|+..   .+...      .     ..-+|.+||+|++.|+||||||.  +.|..+.
T Consensus        33 ~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~  112 (336)
T PF01007_consen   33 SWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECPY  112 (336)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHHH
T ss_pred             CeeeeeehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcch
Confidence            46553 3344455667788887777421   11111      1     11479999999999999999998  5688889


Q ss_pred             Cceeeehhhhhhhhhhhhhhcchhhhhhh
Q 040114          167 TKLFTCVFILIGFGFVDILLNGLVTYICD  195 (378)
Q Consensus       167 g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~  195 (378)
                      +-++.++-+++|+.+.+++++.+...+.+
T Consensus       113 a~~l~~~q~~~g~l~~a~~~Glvfar~sr  141 (336)
T PF01007_consen  113 AIFLVTIQSLVGLLLDAFMTGLVFARFSR  141 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999988887776655543

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=97.38  E-value=0.00012  Score=74.85  Aligned_cols=54  Identities=28%  Similarity=0.582  Sum_probs=49.3

Q ss_pred             ccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhh
Q 040114          141 PVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYIC  194 (378)
Q Consensus       141 ~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~  194 (378)
                      |..++||.++.|||||||++.|.|...|+|.+..+++|-.+.+..++.+...+.
T Consensus       424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~Q  477 (971)
T KOG0501|consen  424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQ  477 (971)
T ss_pred             ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            788999999999999999999999999999999999999998888887765554

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=97.26  E-value=0.00022  Score=72.95  Aligned_cols=53  Identities=28%  Similarity=0.519  Sum_probs=48.3

Q ss_pred             cccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          245 WVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELR  297 (378)
Q Consensus       245 ~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~  297 (378)
                      |+.|+||++.++||||||.+.|.|...++|++..|++|..+.|..++.++...
T Consensus       424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~  476 (971)
T KOG0501|consen  424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTII  476 (971)
T ss_pred             ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            67799999999999999999999999999999999999999888888777553

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.04  E-value=0.00013  Score=71.81  Aligned_cols=52  Identities=25%  Similarity=0.212  Sum_probs=38.7

Q ss_pred             cccccceeEEEEEEeccccCC--cccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 040114          243 MNWVDSFYLSVTSVTTVGYGD--YAFTTLTGRCFAIIWLLVSTLAVARAFLYLT  294 (378)
Q Consensus       243 ~~~~da~Y~~~~T~tTVGyGD--~~p~t~~gr~f~~~~il~g~~~va~~~~~l~  294 (378)
                      .+|.+||+|++-|.||||||.  +.|..+.+-++.++=.++|+.+.+.+++.+-
T Consensus        83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvf  136 (336)
T PF01007_consen   83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVF  136 (336)
T ss_dssp             TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            378999999999999999999  4566677778888888888888777765443

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.52  E-value=0.0024  Score=64.53  Aligned_cols=90  Identities=20%  Similarity=0.257  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccccC-CCCCCCc--------------------cceeeeeeeeeeeeecccccccC
Q 040114          106 PLIVQQAFIGLVLYILAGIVIYLTNGNFK-GKATFKP--------------------VDALYFIVVTLCTIGYGDIVPDT  164 (378)
Q Consensus       106 ~~~~~~~~~~l~~~l~~g~~~~~~~~~~~-~~~~~~~--------------------~~a~yf~~vtltTvGyGdi~P~t  164 (378)
                      -++..++..++++++-.||+.|+...... +...|.|                    .-++||+.-|+||+| -.-.|.|
T Consensus       128 fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t  206 (536)
T KOG0500|consen  128 FRISKLVHYCLILFHWNACLYFLISKAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVT  206 (536)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhhHhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCc
Confidence            34567777888888889998886553221 1223654                    358999999999997 4567889


Q ss_pred             ccCceeeehhhhhhhhhhhhhhcchhhhhhhh
Q 040114          165 TFTKLFTCVFILIGFGFVDILLNGLVTYICDR  196 (378)
Q Consensus       165 ~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~  196 (378)
                      ..-..|.++-.++|+.+|+..++++++.+...
T Consensus       207 ~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm  238 (536)
T KOG0500|consen  207 SSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM  238 (536)
T ss_pred             CchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence            99999999999999999999999998877543

>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]

Probab=96.18  E-value=0.007  Score=59.55  Aligned_cols=90  Identities=14%  Similarity=0.257  Sum_probs=59.2

Q ss_pred             ChH-HHHHHHHHHHHHHHHHHhhhhhcc---cccCC---CCC--------CCccceeeeeeeeeeeeeccccccc--Ccc
Q 040114          104 STP-LIVQQAFIGLVLYILAGIVIYLTN---GNFKG---KAT--------FKPVDALYFIVVTLCTIGYGDIVPD--TTF  166 (378)
Q Consensus       104 ~~~-~~~~~~~~~l~~~l~~g~~~~~~~---~~~~~---~~~--------~~~~~a~yf~~vtltTvGyGdi~P~--t~~  166 (378)
                      +|| .++......++-|+++|+++|+..   +....   .++        .++..||-|++-|=||||||--++.  =|.
T Consensus        61 kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~  140 (400)
T KOG3827|consen   61 KWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPE  140 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccccccCccChH
Confidence            344 445555566677999999999543   11111   122        2688999999999999999987765  345


Q ss_pred             Cceeeehhhhhhhhhhhhhhcchhhhh
Q 040114          167 TKLFTCVFILIGFGFVDILLNGLVTYI  193 (378)
Q Consensus       167 g~~~~~~~~l~Gi~~~~~~~~~~~~~l  193 (378)
                      +-+..++-.++|+.+=+.+++.+..-+
T Consensus       141 aI~ll~~Q~I~g~ii~afm~G~i~aKi  167 (400)
T KOG3827|consen  141 AIFLLVLQSILGVIINAFMVGAIFAKI  167 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            556666677777766666555544333

>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E

Probab=94.86  E-value=0.012  Score=43.16  Aligned_cols=55  Identities=29%  Similarity=0.495  Sum_probs=40.2

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhh-hcccCCCCCcccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQ-FDLIDDSKCGKITVADLMY  376 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~-f~~ld~~~~G~l~~~d~~~  376 (378)
                      ..|.+++|.++..|+... +...+. .+++++.+..++ |+..|.|++|.|+.+|..+
T Consensus         8 ~~D~d~~G~i~~~el~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~   64 (66)
T PF13499_consen    8 KFDKDGDGYISKEELRRA-LKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLN   64 (66)
T ss_dssp             HHSTTSSSEEEHHHHHHH-HHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred             HHcCCccCCCCHHHHHHH-HHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence            458899999999987764 445443 336666544444 9999999999999988653

...

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=94.82  E-value=0.0056  Score=53.99  Aligned_cols=49  Identities=22%  Similarity=0.535  Sum_probs=37.4

Q ss_pred             CCccceeeeeeeeeeeeeccccccc-----CccCceeeehhhh-hhhhhhhhhhc
Q 040114          139 FKPVDALYFIVVTLCTIGYGDIVPD-----TTFTKLFTCVFIL-IGFGFVDILLN  187 (378)
Q Consensus       139 ~~~~~a~yf~~vtltTvGyGdi~P~-----t~~g~~~~~~~~l-~Gi~~~~~~~~  187 (378)
                      -++..++|+.+.++||.|+||..|.     +..+.++.+.+.+ .++.++.++++
T Consensus       144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nllia  198 (200)
T PF00520_consen  144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIA  198 (200)
T ss_dssp             SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHh
Confidence            4689999999999999999999998     7777777744444 44455555544

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]

Probab=93.61  E-value=0.04  Score=47.80  Aligned_cols=55  Identities=25%  Similarity=0.340  Sum_probs=42.4

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHH--HHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEK--DILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~e--di~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .+|.+++|.++..||+.-+-......+.+  ...++.+.|+..|.|++|.|+.+||.
T Consensus        52 ~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~  108 (151)
T KOG0027|consen   52 EIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELK  108 (151)
T ss_pred             HhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHH
Confidence            46777899999999986544444333333  46788999999999999999999885

>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]

Probab=93.46  E-value=0.23  Score=49.16  Aligned_cols=48  Identities=19%  Similarity=0.270  Sum_probs=35.3

Q ss_pred             ccccceeEEEEEEeccccCCcccCCc--chhHHHHHHHHHHHHHHHHHHH
Q 040114          244 NWVDSFYLSVTSVTTVGYGDYAFTTL--TGRCFAIIWLLVSTLAVARAFL  291 (378)
Q Consensus       244 ~~~da~Y~~~~T~tTVGyGD~~p~t~--~gr~f~~~~il~g~~~va~~~~  291 (378)
                      +|..||-|++-|=||||||--.++..  .+-+..++-.+.|+.+=+.+++
T Consensus       112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G  161 (400)
T KOG3827|consen  112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVG  161 (400)
T ss_pred             chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            57779999999999999999988764  3555555666777665554444

>TIGR00933 2a38 potassium uptake protein, TrkH family

Probab=93.30  E-value=0.009  Score=60.16  Aligned_cols=142  Identities=15%  Similarity=0.142  Sum_probs=70.3

Q ss_pred             Cccceeeeeeeeeeeeecc--cccccCccCceeeehhhhhhhhhhhhhhc-chhhhh--hhhHHHHHhhhhhhh-----h
Q 040114          140 KPVDALYFIVVTLCTIGYG--DIVPDTTFTKLFTCVFILIGFGFVDILLN-GLVTYI--CDRQEAVFLSTMDEN-----R  209 (378)
Q Consensus       140 ~~~~a~yf~~vtltTvGyG--di~P~t~~g~~~~~~~~l~Gi~~~~~~~~-~~~~~l--~~~~~~~l~r~~~~~-----~  209 (378)
                      ...++.++..++++|.||.  |..--++..+++.++.+++|-.--+..=+ ++.+..  .+.-...+.+..+..     +
T Consensus       231 ~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~gSTaGGiK~~r~~vl~~~~~~~~~~~~~~~~v~~~~  310 (390)
T TIGR00933       231 ALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIKTTTFAILLKQVYREIRRGIHPRIIFSRR  310 (390)
T ss_pred             HHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCCcccCCchHHHHHHHHHHHHHHHHHccCCCceEEeEE
Confidence            4688899999999999995  54444566777777777766332111000 011111  111111111111110     0


Q ss_pred             hhhhhHHHHHH----HHHHHHHhhhhhhcceeecccccccccceeEEEEEEeccccCCcc--c-CCcchhHHHHHHHHHH
Q 040114          210 ERRMRIRIKVC----LALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYA--F-TTLTGRCFAIIWLLVS  282 (378)
Q Consensus       210 ~~~~~~~~~~~----~~~~~~i~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~--p-~t~~gr~f~~~~il~g  282 (378)
                      -....++....    ..+.+.+..+.+++... ...+.++.|+++=++.+++|||.+=-.  | -+..+|+..++.|++|
T Consensus       311 i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G  389 (390)
T TIGR00933       311 IGGKTIDKAILISVWSFFLVFALIFLLSILEL-ISSGYDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFIG  389 (390)
T ss_pred             ECCeehHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence            01111111111    11111111122222111 123678899999888999999765432  3 3567899888888765

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.

>PRK10750 potassium transporter; Provisional

Probab=93.29  E-value=0.042  Score=56.90  Aligned_cols=39  Identities=15%  Similarity=0.244  Sum_probs=26.8

Q ss_pred             ccccceeEEEEEEeccccCCcccC--CcchhHHHHHHHHHH
Q 040114          244 NWVDSFYLSVTSVTTVGYGDYAFT--TLTGRCFAIIWLLVS  282 (378)
Q Consensus       244 ~~~da~Y~~~~T~tTVGyGD~~p~--t~~gr~f~~~~il~g  282 (378)
                      .+.++++.++..+||-||.-....  .+..+.+.++.+++|
T Consensus       304 ~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIG  344 (483)
T PRK10750        304 TLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIG  344 (483)
T ss_pred             HHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHc
Confidence            456677777777899999865433  234567777777776

>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A

Probab=92.86  E-value=0.029  Score=33.53  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=18.2

Q ss_pred             HhhhcccCCCCCccccccccc
Q 040114          355 CNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       355 ~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .+.|+++|.|++|.|+.+|+.
T Consensus         2 ~~~F~~~D~d~DG~is~~E~~   22 (25)
T PF13202_consen    2 KDAFQQFDTDGDGKISFEEFQ   22 (25)
T ss_dssp             HHHHHHHTTTSSSEEEHHHHH
T ss_pred             HHHHHHHcCCCCCcCCHHHHH
Confidence            457999999999999998864

...

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.62  E-value=0.16  Score=51.73  Aligned_cols=50  Identities=24%  Similarity=0.248  Sum_probs=43.0

Q ss_pred             ceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRI  298 (378)
Q Consensus       248 a~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~  298 (378)
                      |+||+..|+||+|- -..|.+..--+|.++=.++|+.++|..++.++++..
T Consensus       187 S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVt  236 (536)
T KOG0500|consen  187 SLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVT  236 (536)
T ss_pred             HHHHHhhhhhhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHH
Confidence            89999999999982 346788888999999999999999999988887644

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.31  E-value=0.041  Score=57.00  Aligned_cols=86  Identities=23%  Similarity=0.315  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccc-ccCCC-------CCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhh
Q 040114          108 IVQQAFIGLVLYILAGIVIYLTNG-NFKGK-------ATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGF  179 (378)
Q Consensus       108 ~~~~~~~~l~~~l~~g~~~~~~~~-~~~~~-------~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi  179 (378)
                      .++...-++..+++-+|+.|.... +--+.       ++..|.-++||++-|++||| |.-.|++-..-+|..+-.+.|+
T Consensus       363 V~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGV  441 (815)
T KOG0499|consen  363 VIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGV  441 (815)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHH
Confidence            344445556667777777663321 11122       33478999999999999999 8888988888888777778899


Q ss_pred             hhhhhhhcchhhhhh
Q 040114          180 GFVDILLNGLVTYIC  194 (378)
Q Consensus       180 ~~~~~~~~~~~~~l~  194 (378)
                      .+|+++++.+-+.+-
T Consensus       442 FvFslliGQmRDvi~  456 (815)
T KOG0499|consen  442 FVFSLLIGQMRDVIG  456 (815)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999988766553

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.29  E-value=0.12  Score=53.83  Aligned_cols=55  Identities=16%  Similarity=0.332  Sum_probs=46.2

Q ss_pred             cccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          241 EDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTEL  296 (378)
Q Consensus       241 e~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~  296 (378)
                      +|..|+-++||++-|++|+| |-..|.+....+|..+=-+.|+.+|+.+++.+-+.
T Consensus       400 ~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDv  454 (815)
T KOG0499|consen  400 EGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDV  454 (815)
T ss_pred             CCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999 77788888778887777788999999988877654

>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand

Probab=91.24  E-value=0.065  Score=33.23  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             HHhhhcccCCCCCccccccccc
Q 040114          354 ICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       354 i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +.+-|+..|.|++|.|+.+|+.
T Consensus         2 ~~~~F~~~D~d~dG~I~~~Ef~   23 (29)
T PF00036_consen    2 LKEAFREFDKDGDGKIDFEEFK   23 (29)
T ss_dssp             HHHHHHHHSTTSSSEEEHHHHH
T ss_pred             HHHHHHHHCCCCCCcCCHHHHH
Confidence            4567999999999999998875

This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....

>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory

Probab=90.12  E-value=0.048  Score=46.40  Aligned_cols=87  Identities=13%  Similarity=0.237  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHhhhhhcccc----cCC-------CCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhh
Q 040114          111 QAFIGLVLYILAGIVIYLTNGN----FKG-------KATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGF  179 (378)
Q Consensus       111 ~~~~~l~~~l~~g~~~~~~~~~----~~~-------~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi  179 (378)
                      +++.+++.+++.++++|+.+.-    ...       ....++.+++|+++.+++. +-++..|.+..+|++.++|.++.+
T Consensus         4 vW~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~l   82 (148)
T PF00060_consen    4 VWLLILLSILLVSLVLWLFERFSPYEWRKNQSSPPRRWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSL   82 (148)
T ss_dssp             HHHHHHHHHHHHHTTGGGT------------------HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHH
Confidence            3455555666666666644321    111       1123577899998888776 667899999999999999999999


Q ss_pred             hhhhhhhcchhhhhhhhHH
Q 040114          180 GFVDILLNGLVTYICDRQE  198 (378)
Q Consensus       180 ~~~~~~~~~~~~~l~~~~~  198 (378)
                      .+.+...+.++.++...+.
T Consensus        83 il~~~Yta~L~s~Lt~~~~  101 (148)
T PF00060_consen   83 ILIASYTANLTSFLTVPKY  101 (148)
T ss_dssp             HHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHhcccCc
Confidence            9999888888887765443

There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=90.02  E-value=0.21  Score=43.76  Aligned_cols=48  Identities=19%  Similarity=0.355  Sum_probs=36.0

Q ss_pred             ccccceeEEEEEEeccccCCcccC-----CcchhHHHHHHHHHHH-HHHHHHHH
Q 040114          244 NWVDSFYLSVTSVTTVGYGDYAFT-----TLTGRCFAIIWLLVST-LAVARAFL  291 (378)
Q Consensus       244 ~~~da~Y~~~~T~tTVGyGD~~p~-----t~~gr~f~~~~il~g~-~~va~~~~  291 (378)
                      ++..|+|+.+.++||.|+||..|.     +..+.++.+.+++++. .+++..++
T Consensus       145 ~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nllia  198 (200)
T PF00520_consen  145 SFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIA  198 (200)
T ss_dssp             SHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHh
Confidence            577899999999999999999997     6777888755555444 44444443

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B

Probab=89.24  E-value=0.11  Score=32.32  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=18.4

Q ss_pred             HHhhhcccCCCCCccccccccc
Q 040114          354 ICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       354 i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +.+-|+..|.|++|.|+.+|+.
T Consensus         2 l~~~F~~~D~d~dG~I~~~el~   23 (31)
T PF13405_consen    2 LREAFKMFDKDGDGFIDFEELR   23 (31)
T ss_dssp             HHHHHHHH-TTSSSEEEHHHHH
T ss_pred             HHHHHHHHCCCCCCcCcHHHHH
Confidence            4677999999999999999975

...

>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A

Probab=86.81  E-value=0.35  Score=33.90  Aligned_cols=45  Identities=27%  Similarity=0.543  Sum_probs=33.2

Q ss_pred             CCCcccchHHHHHHHHhC-C-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          327 DGSISKSEFVIYKLKEMG-K-IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       327 d~~v~~~e~~~~~L~~~g-~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +|.++.+|+.... ..+| + .+++++..+   |...|.|++|.|+.+|..
T Consensus         2 ~G~i~~~~~~~~l-~~~g~~~~s~~e~~~l---~~~~D~~~~G~I~~~EF~   48 (54)
T PF13833_consen    2 DGKITREEFRRAL-SKLGIKDLSEEEVDRL---FREFDTDGDGYISFDEFI   48 (54)
T ss_dssp             SSEEEHHHHHHHH-HHTTSSSSCHHHHHHH---HHHHTTSSSSSEEHHHHH
T ss_pred             cCEECHHHHHHHH-HHhCCCCCCHHHHHHH---HHhcccCCCCCCCHHHHH
Confidence            5778888877654 5544 4 788886554   667789999999998865

...

>smart00027 EH Eps15 homology domain

Probab=86.58  E-value=0.37  Score=38.32  Aligned_cols=30  Identities=23%  Similarity=0.283  Sum_probs=26.5

Q ss_pred             CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          346 IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       346 is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ++++++..+.+.|+.+|.|++|.|+.+||.
T Consensus         4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~   33 (96)
T smart00027        4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAK   33 (96)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCeEeHHHHH
Confidence            578889999999999999999999998874

Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.

>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction

Probab=86.24  E-value=0.72  Score=33.32  Aligned_cols=50  Identities=34%  Similarity=0.405  Sum_probs=36.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...|. +++++..+   |+..|.|++|.++.+|..
T Consensus         7 ~~D~~~~G~i~~~el~~-~l~~~g~-~~~~~~~i---~~~~d~~~~g~i~~~ef~   56 (67)
T cd00052           7 SLDPDGDGLISGDEARP-FLGKSGL-PRSVLAQI---WDLADTDKDGKLDKEEFA   56 (67)
T ss_pred             HhCCCCCCcCcHHHHHH-HHHHcCC-CHHHHHHH---HHHhcCCCCCcCCHHHHH
Confidence            35678889999888664 3445564 77777666   556678999999988764

The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.

>TIGR00933 2a38 potassium uptake protein, TrkH family

Probab=85.65  E-value=0.25  Score=49.82  Aligned_cols=148  Identities=11%  Similarity=0.143  Sum_probs=70.0

Q ss_pred             CCCccceeeeeeeeeeeeecccccc---cCccCceeeehh-hhhhhhhhhhhhcchhhhhh--hhHHHHHhhh-hh--hh
Q 040114          138 TFKPVDALYFIVVTLCTIGYGDIVP---DTTFTKLFTCVF-ILIGFGFVDILLNGLVTYIC--DRQEAVFLST-MD--EN  208 (378)
Q Consensus       138 ~~~~~~a~yf~~vtltTvGyGdi~P---~t~~g~~~~~~~-~l~Gi~~~~~~~~~~~~~l~--~~~~~~l~r~-~~--~~  208 (378)
                      ..++.||++-++..+||.|.-=+.+   .++.++++-.+. .+.|+.++.+....+...-.  ....+.+... ..  +.
T Consensus        13 ~~s~~dA~FeavSa~ttTGltv~~~~~~~~~~~~~~r~~l~~iGGlG~~v~~~~~l~~~g~~~~~~~~l~~~e~~~~~~~   92 (390)
T TIGR00933        13 PLSFIDALFTATSAVTTTGLTVLDTLESLPKAGLFLRSLLQQIGGLGFMVLAVAILILLGKKISLGARLYLAEALGPLSD   92 (390)
T ss_pred             CCCHHHHHHhhHhhcccCCCeEccChhhcCHhHHHHHHHHHHHcChHHHHHHHHHHHHHccccCHHHHHHHHHhCCCCCc
Confidence            3578999999999999999633222   234444443333 33455544443322211000  0111111111 11  00


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhhhhhcceeecccccccccceeEEEEEEeccccCCcccC------CcchhHHHHHHHHHH
Q 040114          209 RERRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFT------TLTGRCFAIIWLLVS  282 (378)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~p~------t~~gr~f~~~~il~g  282 (378)
                      .+-..+.+......+.+.++..++++..++..+..+++||++.++.+++|-||.-....      ++...+..++++++|
T Consensus        93 ~~~~~~i~~~~~~~~~iy~~lt~l~~~~~~~~g~~~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iG  172 (390)
T TIGR00933        93 DKLLPLIKNTAKFIFVIYLLGTILLAVRFVLTGWMPLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILG  172 (390)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHH
Confidence            11111222222222222222233333333332227899999999999999998765431      112345555666655


Q ss_pred             HHH
Q 040114          283 TLA  285 (378)
Q Consensus       283 ~~~  285 (378)
                      -.-
T Consensus       173 g~g  175 (390)
T TIGR00933       173 GLG  175 (390)
T ss_pred             hcC
Confidence            433

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.

>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6

Probab=83.52  E-value=0.9  Score=35.78  Aligned_cols=46  Identities=17%  Similarity=0.359  Sum_probs=33.5

Q ss_pred             CCCcccchHHHHHH--HHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          327 DGSISKSEFVIYKL--KEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       327 d~~v~~~e~~~~~L--~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +|.++..|+....-  ..+| +.+++++.++   |+++|.|++|.++.+|.+
T Consensus        26 ~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m---~~~~D~d~dG~Idf~EFv   74 (88)
T cd05029          26 KNTLSKKELKELIQKELTIGSKLQDAEIAKL---MEDLDRNKDQEVNFQEYV   74 (88)
T ss_pred             CCEECHHHHHHHHHHHHhcCCCCCHHHHHHH---HHHhcCCCCCCCcHHHHH
Confidence            67888888764321  1244 4689988887   556799999999988864

S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact

>PRK05482 potassium-transporting ATPase subunit A; Provisional

Probab=83.29  E-value=0.27  Score=51.36  Aligned_cols=41  Identities=12%  Similarity=0.139  Sum_probs=33.6

Q ss_pred             cccccceeEEEEEEeccc--cCCcccCCcchhHHHHHHHHHHH
Q 040114          243 MNWVDSFYLSVTSVTTVG--YGDYAFTTLTGRCFAIIWLLVST  283 (378)
Q Consensus       243 ~~~~da~Y~~~~T~tTVG--yGD~~p~t~~gr~f~~~~il~g~  283 (378)
                      ..+.+.+|=.+....|+|  +|.+.+.|..+++..++.|++|=
T Consensus       450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR  492 (559)
T PRK05482        450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGR  492 (559)
T ss_pred             CCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence            578888998888888886  44578889999999999998873

>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]

Probab=82.39  E-value=1.1  Score=40.81  Aligned_cols=58  Identities=28%  Similarity=0.383  Sum_probs=40.9

Q ss_pred             eeeeecCCCCCcccchHH---HHHHHHhCC----CCHH-HHHHHHhhhcccCCCCCcccccccccc
Q 040114          319 LVAADLDNDGSISKSEFV---IYKLKEMGK----IAEK-DILQICNQFDLIDDSKCGKITVADLMY  376 (378)
Q Consensus       319 l~~~d~d~d~~v~~~e~~---~~~L~~~g~----is~e-di~~i~~~f~~ld~~~~G~l~~~d~~~  376 (378)
                      ....|.|+||.+++.|.+   ...+..+|.    -.++ --.....-|.+.|.|++|.||.+|...
T Consensus       106 F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~  171 (193)
T KOG0044|consen  106 FRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIE  171 (193)
T ss_pred             heeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHH
Confidence            567899999999999953   333445554    1111 123455679999999999999998653

>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13

Probab=82.31  E-value=1.2  Score=35.24  Aligned_cols=47  Identities=15%  Similarity=0.292  Sum_probs=34.3

Q ss_pred             CCCCCcccchHHHHHHHH-hCC-CCH-HHHHHHHhhhcccCCCCCccccccccc
Q 040114          325 DNDGSISKSEFVIYKLKE-MGK-IAE-KDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       325 d~d~~v~~~e~~~~~L~~-~g~-is~-edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +++|.++..|+.. .+.. +|. +++ +++..+   ++++|.|++|.++.+|.+
T Consensus        21 ~~~g~i~~~ELk~-ll~~elg~~ls~~~~v~~m---i~~~D~d~DG~I~F~EF~   70 (89)
T cd05022          21 GGKESLTASEFQE-LLTQQLPHLLKDVEGLEEK---MKNLDVNQDSKLSFEEFW   70 (89)
T ss_pred             CCCCeECHHHHHH-HHHHHhhhhccCHHHHHHH---HHHhCCCCCCCCcHHHHH
Confidence            6788899888764 3344 664 566 666555   577899999999988753

S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu

>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E

Probab=81.63  E-value=0.48  Score=34.48  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             HHHhhhcccCCCCCccccccccc
Q 040114          353 QICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       353 ~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ++.+.|+.+|.|++|.|+.+||.
T Consensus         1 ~l~~~F~~~D~d~~G~i~~~el~   23 (66)
T PF13499_consen    1 RLKEAFKKFDKDGDGYISKEELR   23 (66)
T ss_dssp             HHHHHHHHHSTTSSSEEEHHHHH
T ss_pred             CHHHHHHHHcCCccCCCCHHHHH
Confidence            35788999999999999999885

...

>PRK10750 potassium transporter; Provisional

Probab=81.53  E-value=0.25  Score=51.18  Aligned_cols=56  Identities=11%  Similarity=0.154  Sum_probs=36.4

Q ss_pred             HHhhhhhhcceeecccccccccceeEEEEEEecccc--CCc----ccCCcchhHHHHHHHHHH
Q 040114          226 VIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGY--GDY----AFTTLTGRCFAIIWLLVS  282 (378)
Q Consensus       226 ~i~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGy--GD~----~p~t~~gr~f~~~~il~g  282 (378)
                      .++++.+++.+. ..++.+..+|+--+..+++++|.  |..    ..-+..+|++.++.|++|
T Consensus       404 y~~~~~~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllG  465 (483)
T PRK10750        404 YALVFIVSMLAI-IATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFG  465 (483)
T ss_pred             HHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHH
Confidence            334444454444 45667788888767677776654  333    234567899999999887

>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z

Probab=80.85  E-value=2.2  Score=33.86  Aligned_cols=50  Identities=18%  Similarity=0.220  Sum_probs=33.5

Q ss_pred             ecCCCC-CcccchHHHHHHHH-----hCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          323 DLDNDG-SISKSEFVIYKLKE-----MGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       323 d~d~d~-~v~~~e~~~~~L~~-----~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +.|++| .++..|+....-..     .+..+++++.++.+   ++|.|++|.|+.+|.+
T Consensus        21 d~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~---elD~n~dG~Idf~EF~   76 (93)
T cd05026          21 GKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMN---DLDSNKDNEVDFNEFV   76 (93)
T ss_pred             ccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHH---HhCCCCCCCCCHHHHH
Confidence            467887 49998875432122     23446677766655   5578999999988754

S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac

>PTZ00183 centrin; Provisional

Probab=80.27  E-value=2  Score=36.56  Aligned_cols=52  Identities=19%  Similarity=0.236  Sum_probs=37.9

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+..........++++++..+.   ..+|.|++|.|+.+|+.
T Consensus        98 ~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~---~~~d~~~~g~i~~~ef~  149 (158)
T PTZ00183         98 LFDDDKTGKISLKNLKRVAKELGETITDEELQEMI---DEADRNGDGEISEEEFY  149 (158)
T ss_pred             HhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH---HHhCCCCCCcCcHHHHH
Confidence            45778899999888775443333457888887665   55678999999988864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	378
3ouf_A	97	Structure Of A K+ Selective Nak Mutant Length = 97		5e-09
3ouf_A	97	Structure Of A K+ Selective Nak Mutant Length = 97		7e-04
3tcu_A	97	Crystal Structure Of Nak2k Channel D68e Mutant Leng		1e-08
3t4z_A	97	Crystal Structure Of Nak2k Channel Y55w Mutant Leng		1e-08
3t1c_A	97	Crystal Structure Of Nak Channel D66y Mutant Length		2e-08
3tet_A	97	Crystal Structure Of Nak2k Channel Y66f Mutant Leng		2e-08
3t4d_A	97	Crystal Structure Of Nak2k Channel Y55f Mutant Leng		2e-08
3t2m_A	97	Crystal Structure Of Nak Channel N68d Mutant Length		8e-08
2q6a_A	114	Crystal Structure Of Nak Channel D66e Mutant Length		1e-07
2q67_A	114	Crystal Structure Of Nak Channel D66a Mutant Length		1e-07
2q69_A	114	Crystal Structure Of Nak Channel D66n Mutant Length		1e-07
2q68_A	114	Crystal Structure Of Nak Channel D66a, S70e Double		1e-07
2ahy_A	110	Na+ Complex Of The Nak Channel Length = 110		2e-07
3vou_A	148	The Crystal Structure Of Nak-Navsulp Chimera Channe		2e-07
3e83_A	96	Crystal Structure Of The The Open Nak Channel Pore		3e-07
3um7_A	309	Crystal Structure Of The Human Two Pore Domain K+ I		3e-06
3rbz_A	340	Mthk Channel, Ca2+-Bound Length = 340		3e-06
1lnq_A	336	Crystal Structure Of Mthk At 3.3 A Length = 336		3e-06
1lnq_A	336	Crystal Structure Of Mthk At 3.3 A Length = 336		9e-06
3ukm_A	280	Crystal Structure Of The Human Two Pore Domain Pota		1e-05
4hyo_A	91	Crystal Structure Of Mthk Pore Length = 91		3e-05
3ldc_A	82	High Resolution Open Mthk Pore Structure Crystalliz		4e-05
3r65_A	82	Mthk Channel Pore E92q Mutant Length = 82		4e-05
3k06_A	96	Crystal Structure Of Cng Mimicking Nak Mutant, Nak-		5e-05
3k0d_A	96	Crystal Structure Of Cng Mimicking Nak Mutant, Nak-		5e-05
3k03_A	96	Crystal Structure Of Cng Mimicking Nak Mutant, Nak-		7e-05
3ous_A	82	Mthk Channel Pore T59a Mutant Length = 82		2e-04
4h33_A	137	Crystal Structure Of A Voltage-gated K+ Channel Por		5e-04
3ldd_A	82	High Resolution Open Mthk Pore Structure Crystalliz		6e-04
2a9h_A	155	Nmr Structural Studies Of A Potassium Channel Chary		9e-04

>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant Length = 97

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+  +L +++G + Y T          +P+DALYF VVTL T+GYGD  P T F K+
Sbjct: 8   QVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKI 61
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 62  FTILYIFIGIGLV 74

>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant Length = 97

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 233 GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
           GT+    +E +  +D+ Y SV ++TTVGYGD++  T  G+ F I+++ +
Sbjct: 21  GTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFI 69

>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant Length = 97

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+  +L +++G + Y T          +P+DALYF VVTL T+GYG+  P T F K+
Sbjct: 8   QVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKI 61
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 62  FTILYIFIGIGLV 74

>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant Length = 97

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+  +L +++G + Y T          +P+DAL+F VVTL T+GYGD  P T F K+
Sbjct: 8   QVLFVLTILTLISGTIFYST------VEGLRPIDALWFSVVTLTTVGYGDFSPQTDFGKI 61
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 62  FTILYIFIGIGLV 74

>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant Length = 97

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+  +L +++G + Y T          +P+DALYF VVTL T+GYG+  P T F K+
Sbjct: 8   QVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKI 61
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 62  FTILYIFIGIGLV 74

>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant Length = 97

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+  +L +++G + Y T          +P+DALYF VVTL T+G+GD  P T F K+
Sbjct: 8   QVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVGFGDFSPQTDFGKI 61
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 62  FTILYIFIGIGLV 74

>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant Length = 97

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+  +L +++G + Y T          +P+DAL+F VVTL T+GYGD  P T F K+
Sbjct: 8   QVLFVLTILTLISGTIFYST------VEGLRPIDALFFSVVTLTTVGYGDFSPQTDFGKI 61
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 62  FTILYIFIGIGLV 74

>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant Length = 97

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+  +L +++G + Y T          +P+DALYF VVTL T+G GD  P T F K+
Sbjct: 8   QVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVGDGDFSPQTDFGKI 61
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 62  FTILYIFIGIGLV 74

>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant Length = 114

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+  +L +++G + Y T    +      P+DALYF VVTL T+G G+  P T F K+
Sbjct: 25  QVLFVLTILTLISGTIFYSTVEGLR------PIDALYFSVVTLTTVGEGNFSPQTDFGKI 78
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 79  FTILYIFIGIGLV 91

>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant Length = 114

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+  +L +++G + Y T    +      P+DALYF VVTL T+G G+  P T F K+
Sbjct: 25  QVLFVLTILTLISGTIFYSTVEGLR------PIDALYFSVVTLTTVGAGNFSPQTDFGKI 78
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 79  FTILYIFIGIGLV 91

>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant Length = 114

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+  +L +++G + Y T          +P+DALYF VVTL T+G G+  P T F K+
Sbjct: 25  QVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVGNGNFSPQTDFGKI 78
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 79  FTILYIFIGIGLV 91

>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants Length = 114

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+  +L +++G + Y T    +      P+DALYF VVTL T+G G+  P T F K+
Sbjct: 25  QVLFVLTILTLISGTIFYSTVEGLR------PIDALYFSVVTLTTVGAGNFEPQTDFGKI 78
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 79  FTILYIFIGIGLV 91

>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel Length = 110

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+  +L +++G + Y T    +      P+DALYF VVTL T+G G+  P T F K+
Sbjct: 25  QVLFVLTILTLISGTIFYSTVEGLR------PIDALYFSVVTLTTVGDGNFSPQTDFGKI 78
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 79  FTILYIFIGIGLV 91

>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel Length = 148

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+   L + +G + Y T    +      P+DALYF VVTL T+G G+  P T F K+
Sbjct: 28  QVLFVLTFLTLTSGTIFYSTVEGLR------PLDALYFSVVTLTTVGDGNFSPQTDFGKV 81
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 82  FTILYIFIGIGLV 94

>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore Length = 96

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+  +L +++G + Y T          +P+DALYF VVTL T+G G+  P T F K+
Sbjct: 7   QVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKI 60
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 61  FTILYIFIGIGLV 73

>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion Channel Traak (K2p4.1) Length = 309

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 143 DALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGL-------VTYICD 195
            A +F    + TIGYG++   T   +LF   + L+G     ILL G+       + +   
Sbjct: 118 SAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIG 177
Query: 196 RQEAVFLSTMDENRERRMRIRIKVCLALGVVIGCLAI---GTVTVHFLEDMNWVDSFYLS 252
             EA+FL         R+     +   L ++IGCL      T    ++ED + +++ Y  
Sbjct: 178 HIEAIFLKWHVPPELVRV-----LSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFV 232
Query: 253 VTSVTTVGYGDY 264
           + ++TTVG+GDY
Sbjct: 233 IVTLTTVGFGDY 244

>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound Length = 340

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 225 VVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAI--IWLLVS 282
           +V+  +  GT   HF+E  +W  S Y +  ++ TVGYGDY+ +T  G  F +  I L ++
Sbjct: 26  LVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIA 85
Query: 283 TLAVARAFL 291
           T AVA A L
Sbjct: 86  TFAVAVARL 94

>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A Length = 336

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 103 KSTPLIVQQAFIGLVLYILAGIVIYLTNG-NFKGKATFKPVDALYFIVVTLCTIGYGDIV 161
           K  P +++     ++L +LA ++IY T G +F    ++    +LY+  VT+ T+GYGD  
Sbjct: 10  KHLPRVLKVPATRILLLVLA-VIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYS 66
Query: 162 PDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERRMRI 215
           P T     FT   I++G G   + +  L+ ++ +R++   +  +D  + R + I
Sbjct: 67  PSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLIDVAKSRHVVI 120

>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A Length = 336

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 225 VVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAI--IWLLVS 282
           +V+  +  GT   HF+E  +W  S Y +  ++ TVGYGDY+ +T  G  F +  I L + 
Sbjct: 26  LVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIG 85
Query: 283 TLAVA 287
           T AVA
Sbjct: 86  TFAVA 90

>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium Ion Channel K2p1 (Twik-1) Length = 280

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
Query: 135 GKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYI- 193
           G   +    AL+F    L T GYG  VP +   K F  ++ +IG  F  + L  +V  I 
Sbjct: 88  GNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147
Query: 194 --CDRQEAVFLSTMDENRERRMRIRIKVCLALGVVIGCLAIGTVTVHFLE-DMNWVDSFY 250
               R+  ++        ++ + I   V L    V     I       LE D N+++SFY
Sbjct: 148 VHVTRRPVLYFHIRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFY 207
Query: 251 LSVTSVTTVGYGDY 264
               S++T+G GDY
Sbjct: 208 FCFISLSTIGLGDY 221

>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore Length = 91

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 215 IRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCF 274
           +++     L +V+  +  GT   HF+E  +W  S Y +  ++ TVGYGDY+  T  G  F
Sbjct: 6   LKVPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYF 65
Query: 275 --AIIWLLVSTLAVA 287
              +I L + T AVA
Sbjct: 66  TCTLIVLGIGTFAVA 80

>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In 100 Mm K+ Length = 82

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 223 LGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCF--AIIWLL 280
           L +V+  +  GT   HF+E  +W  S Y +  ++ TVGYGDY+  T  G  F   +I L 
Sbjct: 7   LLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLG 66
Query: 281 VSTLAVA 287
           + T AVA
Sbjct: 67  IGTFAVA 73

>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant Length = 82

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 223 LGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCF--AIIWLL 280
           L +V+  +  GT   HF+E  +W  S Y +  ++ TVGYGDY+  T  G  F   +I L 
Sbjct: 7   LLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLG 66
Query: 281 VSTLAVA 287
           + T AVA
Sbjct: 67  IGTFAVA 73

>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp, K+ Complex Length = 96

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+  +L +++G + Y T          +P+DALYF VVTL T+G     P T F K+
Sbjct: 8   QVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVG-NTPPPQTDFGKI 60
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 61  FTILYIFIGIGLV 73

>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp, K+ Complex Length = 96

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+  +L +++G + Y T    +      P+DALYF VVTL T+G     P T F K+
Sbjct: 8   QVLFVLTILTLISGTIFYSTVEGLR------PIDALYFSVVTLTTVGETP-PPQTDFGKI 60
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 61  FTILYIFIGIGLV 73

>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp, K+ Complex Length = 96

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
           Q  F+  +L +++G + Y T    +      P+DALYF VVTL T+G     P T F K+
Sbjct: 8   QVLFVLTILTLISGTIFYSTVEGLR------PIDALYFSVVTLTTVG-DTPPPQTDFGKI 60
Query: 170 FTCVFILIGFGFV 182
           FT ++I IG G V
Sbjct: 61  FTILYIFIGIGLV 73

>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant Length = 82

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 223 LGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCF--AIIWLL 280
           L +V+  +  GT   HF+E  +W  S Y +  ++  VGYGDY+  T  G  F   +I L 
Sbjct: 7   LLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLG 66
Query: 281 VSTLAVA 287
           + T AVA
Sbjct: 67  IGTFAVA 73

>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore Module In A Closed State In Lipid Membranes, Tetragonal Crystal Form Length = 137

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 143 DALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTY 192
           DAL++ +VT  T+GYGDIVP T   ++   + +L G  F+ ++ + +  +
Sbjct: 46  DALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNF 95

>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In 100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+ Length = 82

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 225 VVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCF--AIIWLLVS 282
           +V+  +  GT   HF+E  +W  S Y +  ++ TVGYGDY+  T  G  F   +I L + 
Sbjct: 9   LVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIG 68
Query: 283 TLAVA 287
           T AVA
Sbjct: 69  TFAVA 73

>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel Charybdotoxin Complex Length = 155

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 116 LVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVF 174
           LV+ +LAG  +  L      G A     DAL++ V T  T+GYGD+ P T + +    V 
Sbjct: 59  LVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVV 118
Query: 175 ILIGFGFVDILLNGLVTYICDRQE 198
           ++ G     ++   + T+   R++
Sbjct: 119 MVAGITSYGLVFAAVATWFVGREQ 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	378
3um7_A	309	Potassium channel subfamily K member 4; potassium	4e-25
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	1e-22
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	1e-17
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	1e-16
2q67_A	114	Potassium channel protein; inverted teepee, helix	3e-17
2q67_A	114	Potassium channel protein; inverted teepee, helix	2e-15
3ouf_A	97	Potassium channel protein; ION channel, membrane,	3e-17
3ouf_A	97	Potassium channel protein; ION channel, membrane,	2e-16
1lnq_A	336	MTHK channels, potassium channel related protein;	7e-15
1lnq_A	336	MTHK channels, potassium channel related protein;	1e-12
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	2e-14
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	4e-14
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	1e-10
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	2e-05
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	7e-10
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	7e-06
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	1e-09
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	2e-05
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	1e-09
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	3e-04
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	4e-09
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	9e-05
2a9h_A	155	Voltage-gated potassium channel; potassium channel	5e-09
2a9h_A	155	Voltage-gated potassium channel; potassium channel	1e-04
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	2e-08
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	5e-08
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	8e-06
1xl4_A	301	Inward rectifier potassium channel; integral membr	3e-07
1xl4_A	301	Inward rectifier potassium channel; integral membr	2e-05
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1p7b_A	333	Integral membrane channel and cytosolic domains; t	5e-06
1p7b_A	333	Integral membrane channel and cytosolic domains; t	7e-05
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	1e-05
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	5e-05
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	7e-04
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	8e-04

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309

 Score =  102 bits (256), Expect = 4e-25
 Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 11/208 (5%)

Query: 119 YILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIG 178
            +  G      + +    + +    A +F    + TIGYG++   T   +LF   + L+G
Sbjct: 94  ALGGGADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVG 153

Query: 179 FGFVDILLNGLVTYICDRQEAVF-----LSTMDENRERRMRIRIKVCLALGVVIGCLAIG 233
                ILL G+   +             +          +R+   +   L   +  +   
Sbjct: 154 IPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLLFVLTP 213

Query: 234 TVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTL------TGRCFAIIWLLVSTLAVA 287
           T    ++ED + +++ Y  + ++TTVG+GDY             +     W+L+     A
Sbjct: 214 TFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFA 273

Query: 288 RAFLYLTELRIEKRNRRIAKWVLQKKMT 315
                +         R  A+       +
Sbjct: 274 SVLTTIGNWLRVVSRRTRAEMGGLTAQS 301

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280

 Score = 95.7 bits (237), Expect = 1e-22
 Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 14/201 (6%)

Query: 116 LVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFI 175
           ++     G+ +        G   +    AL+F    L T GYG  VP +   K F  ++ 
Sbjct: 72  VLEASNYGVSVL---SQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYS 128

Query: 176 LIGFGFVDILL----NGLVTYICDRQEAVFLSTMDENRERRMRIRIKVCLALGVVIGCLA 231
           +IG  F  + L      +  ++  R    F      +++    +   +   + V      
Sbjct: 129 VIGIPFTLLFLTAVVQRITVHVTRRPVLYFHIRWGFSKQVVAIVHAVLLGFVTVSCFFFI 188

Query: 232 IGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTG-------RCFAIIWLLVSTL 284
              V     +D N+++SFY    S++T+G GDY              +     +LL+  +
Sbjct: 189 PAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLI 248

Query: 285 AVARAFLYLTELRIEKRNRRI 305
           A+        EL   K+ R++
Sbjct: 249 AMLVVLETFCELHELKKFRKM 269

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 78.1 bits (192), Expect = 1e-17
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query: 108 IVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFT 167
             Q  F+   L + +G + Y T    +      P+DALYF VVTL T+G G+  P T F 
Sbjct: 26  EFQVLFVLTFLTLTSGTIFYSTVEGLR------PLDALYFSVVTLTTVGDGNFSPQTDFG 79

Query: 168 KLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERRMRIRIKV 219
           K+FT ++I IG G V   ++ L   +  +  ++  +   E    R+ +  K+
Sbjct: 80  KVFTILYIFIGIGLVFGFIHKLAVNV--QLPSILSNRKKETDAYRLEVMEKL 129

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 75.4 bits (185), Expect = 1e-16
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 211 RRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLT 270
            R     +  +   +    L  GT+    +E +  +D+ Y SV ++TTVG G+++  T  
Sbjct: 19  LRAWKDKEFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDF 78

Query: 271 GRCFAIIWLLV-------STLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAAD 323
           G+ F I+++ +           +A      + L   K+     +  + +K+   +   A+
Sbjct: 79  GKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAE 138

Query: 324 LDNDGSIS 331
               GS+ 
Sbjct: 139 HSRQGSLV 146

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 76.1 bits (187), Expect = 3e-17
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 108 IVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFT 167
             Q  F+  +L +++G + Y T    +      P+DALYF VVTL T+G G+  P T F 
Sbjct: 23  EFQVLFVLTILTLISGTIFYSTVEGLR------PIDALYFSVVTLTTVGAGNFSPQTDFG 76

Query: 168 KLFTCVFILIGFGFVDILLNGLVTYI 193
           K+FT ++I IG G V   ++ L   +
Sbjct: 77  KIFTILYIFIGIGLVFGFIHKLAVNV 102

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 70.7 bits (173), Expect = 2e-15
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 211 RRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLT 270
            R     +  +   + I  L  GT+    +E +  +D+ Y SV ++TTVG G+++  T  
Sbjct: 16  LRAWKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDF 75

Query: 271 GRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQK 312
           G+ F I+++ +    +   F ++ +L +  +   I   ++ +
Sbjct: 76  GKIFTILYIFIG---IGLVFGFIHKLAVNVQLPSILSNLVPR 114

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 75.2 bits (185), Expect = 3e-17
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 6/86 (6%)

Query: 108 IVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFT 167
             Q  F+  +L +++G + Y T    +      P+DALYF VVTL T+GYGD  P T F 
Sbjct: 6   EFQVLFVLTILTLISGTIFYSTVEGLR------PIDALYFSVVTLTTVGYGDFSPQTDFG 59

Query: 168 KLFTCVFILIGFGFVDILLNGLVTYI 193
           K+FT ++I IG G V   ++ L   +
Sbjct: 60  KIFTILYIFIGIGLVFGFIHKLAVNV 85

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 72.9 bits (179), Expect = 2e-16
 Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 213 MRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGR 272
           M    +  +   + I  L  GT+    +E +  +D+ Y SV ++TTVGYGD++  T  G+
Sbjct: 1   MAKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGK 60

Query: 273 CFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQK 312
            F I+++ +    +   F ++ +L +  +   I   ++ +
Sbjct: 61  IFTILYIFIG---IGLVFGFIHKLAVNVQLPSILSNLVPR 97

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 73.6 bits (181), Expect = 7e-15
 Identities = 25/99 (25%), Positives = 46/99 (46%)

Query: 209 RERRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTT 268
           +     +++     L +V+  +  GT   HF+E  +W  S Y +  ++ TVGYGDY+ +T
Sbjct: 10  KHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPST 69

Query: 269 LTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAK 307
             G  F +  +++     A A   L E  I +   ++  
Sbjct: 70  PLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMG 108

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 67.1 bits (164), Expect = 1e-12
 Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 14/120 (11%)

Query: 99  RPPLKSTPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYG 158
           +   +   +   +  + ++  I+ G   +          ++    +LY+  VT+ T+GYG
Sbjct: 10  KHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEGE----SW--TVSLYWTFVTIATVGYG 63

Query: 159 DIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERRMRIRIK 218
           D  P T     FT   I++G G   + +  L+ ++ +R++              + +   
Sbjct: 64  DYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQ--------MKLMGLIDVAKS 115

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 25/82 (30%), Positives = 38/82 (46%)

Query: 217 IKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAI 276
           +     L +V+  +  GT   HF+E  +W  S Y +  ++ TVGYGDY+  T  G  F  
Sbjct: 1   VPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTC 60

Query: 277 IWLLVSTLAVARAFLYLTELRI 298
             +++     A A   L E  I
Sbjct: 61  TLIVLGIGTFAVAVERLLEFLI 82

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 66.2 bits (162), Expect = 4e-14
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 109 VQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTK 168
             +  + ++  I+ G   +                +LY+  VT+ T+GYGD  P T    
Sbjct: 3   ATRILLLVLAVIIYGTAGFHFIEGES------WTVSLYWTFVTIATVGYGDYSPHTPLGM 56

Query: 169 LFTCVFILIGFGFVDILLNGLVTYI 193
            FTC  I++G G   + +  L+ ++
Sbjct: 57  YFTCTLIVLGIGTFAVAVERLLEFL 81

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 113 FIGLVLYILAGIVIYLTNGNFKGKATFKPV-DALYFIVVTLCTIGYGDIVPDTTFTKLFT 171
            + +++ +    +  L      G A       AL++ V T  T+GYGD+ P T + +L  
Sbjct: 13  VLLVIVLLAGSYLAVLAERGAPG-AQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVA 71

Query: 172 CVFILIGFGF----VDILLNGLVTYICDRQEAVFLSTMDENRERRMR 214
            V ++ G          L    V    +R+      +     E   R
Sbjct: 72  VVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTR 118

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 14/120 (11%)

Query: 221 LALGVVIGCLAIGTVTVHFLED-------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRC 273
            A  +++  L  G+      E        + +  + + SV + TTVGYGD    TL GR 
Sbjct: 10  AATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRL 69

Query: 274 FAIIWLL--VSTLA-----VARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADLDN 326
            A++ ++  +++       +A  F+   + R     R   K   +        +    D 
Sbjct: 70  VAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRTTRALHERFDR 129

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 54.8 bits (132), Expect = 7e-10
 Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 6/92 (6%)

Query: 112 AFIGLVLYILAGIVIYLTNGNFKGKATFKPV-DALYFIVVTLCTIGYGDIVPDTTFTKLF 170
                 +   A            G A      DA+++ V T  T+GYGD  P T   +  
Sbjct: 12  EEELQKVLEEASKKAVEAERGAPG-AALISYPDAIWWSVETATTVGYGDRYPVTEEGRKV 70

Query: 171 TCVFILIGFGFV----DILLNGLVTYICDRQE 198
               +  G          L    V    +R+ 
Sbjct: 71  AEQVMKAGIEVFALVTAALATDFVRREEERRG 102

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 221 LALGVVIGCLAIGTVTVHFLED-------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRC 273
            A   +   L   +      E        +++ D+ + SV + TTVGYGD    T  GR 
Sbjct: 10  KAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRK 69

Query: 274 FAIIWLLVSTLAVA 287
            A   +       A
Sbjct: 70  VAEQVMKAGIEVFA 83

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 56.1 bits (135), Expect = 1e-09
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 4/106 (3%)

Query: 113 FIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTC 172
            + +++ +    +  L      G        AL++ V T  T+GYGD+ P T + +L   
Sbjct: 40  VLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAV 99

Query: 173 VFILIGFGFV----DILLNGLVTYICDRQEAVFLSTMDENRERRMR 214
           V ++ G          L    V     +Q+     +     E   R
Sbjct: 100 VVMVAGITSFGLVTAALATWFVGQEQQQQQQFVRHSEKAAEEAYTR 145

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 15/130 (11%)

Query: 211 RRMRIRIKVCLALGVVIGCLAIGTVTVHFLED-------MNWVDSFYLSVTSVTTVGYGD 263
             ++ R      + +VI  L  G+      E        + +  + + SV + TTVGYGD
Sbjct: 28  SALQWRAAGAATVLLVIV-LLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGD 86

Query: 264 YAFTTLTGRCFAIIWLL--VSTLA-----VARAFLYLTELRIEKRNRRIAKWVLQKKMTL 316
               TL GR  A++ ++  +++       +A  F+   + + ++  R   K   +     
Sbjct: 87  LYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQFVRHSEKAAEEAYTRT 146

Query: 317 GDLVAADLDN 326
              +    D 
Sbjct: 147 TRALHERFDR 156

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 113 FIGLVLYILAGIVIYLTNGNFKGKATFKPV-DALYFIVVTLCTIGYGDIVPDTTFTKLFT 171
              ++  +     IY+        +  K V DAL++ VVT  T+GYGD+VP T   K+  
Sbjct: 138 GAVMLTVLYGAFAIYIVEYPDPNSS-IKSVFDALWWAVVTATTVGYGDVVPATPIGKVIG 196

Query: 172 CVFILIGFGFV 182
              +L G   +
Sbjct: 197 IAVMLTGISAL 207

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 211 RRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWV-------DSFYLSVTSVTTVGYGD 263
                +I+     G V+  +  G   ++ +E  +         D+ + +V + TTVGYGD
Sbjct: 125 ADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGD 184

Query: 264 YAFTTLTGRCFAIIWLL--VSTLAV 286
               T  G+   I  +L  +S L +
Sbjct: 185 VVPATPIGKVIGIAVMLTGISALTL 209

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 113 FIGLVLYILAGIVIYLTNGNFKGKATFKPV-DALYFIVVTLCTIGYGDIVPDTTFTKLFT 171
            + +++ +    +  L      G A       AL++   T  T+ YGD+ P T + +L  
Sbjct: 34  VLLVIVLLAGSYLAVLAERGAPG-AQLITYPRALWWACETATTVAYGDLYPVTLWGRLVA 92

Query: 172 CVFILIGFGFVDILLNGLVTYICDRQE 198
            V ++ G     ++   L T+   R++
Sbjct: 93  VVVMVAGITSFGLVTAALATWFVGREQ 119

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 211 RRMRIRIKVCLALGVVIGCLAIGTVTVHFLED-------MNWVDSFYLSVTSVTTVGYGD 263
             +  R      + +VI  L  G+      E        + +  + + +  + TTV YGD
Sbjct: 22  SALHWRAAGAATVLLVIV-LLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGD 80

Query: 264 YAFTTLTGRCFAIIWLLVSTLAVA 287
               TL GR  A++ ++    +  
Sbjct: 81  LYPVTLWGRLVAVVVMVAGITSFG 104

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 113 FIGLVLYILAGIVIYLTNGNFKGKATFKPV-DALYFIVVTLCTIGYGDIVPDTTFTKLFT 171
            + +++ +    +  L      G A      DAL++ V T  T+GYGD+ P T + +   
Sbjct: 57  VLLVIVLLAGSYLAVLAERGAPG-AALISYPDALWWSVETATTVGYGDLYPVTLWGRCVA 115

Query: 172 CVFILIGFGFV----DILLNGLVTYICDRQE 198
            V ++ G          +    V    +R+ 
Sbjct: 116 VVVMVAGITSYGLVFAAVATWFVGREQERRG 146

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 211 RRMRIRIKVCLALGVVIGCLAIGTVTVHFLED-------MNWVDSFYLSVTSVTTVGYGD 263
             +  R      + +VI  L  G+      E        +++ D+ + SV + TTVGYGD
Sbjct: 45  SALHWRAAGAATVLLVIV-LLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGD 103

Query: 264 YAFTTLTGRCFAIIWLLVSTLAVA 287
               TL GRC A++ ++    +  
Sbjct: 104 LYPVTLWGRCVAVVVMVAGITSYG 127

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 113 FIGLVLYILAGIVIYLTNGNFKGKATFKPV-DALYFIVVTLCTIGYGDIVPDTTFTKLFT 171
            +  V+     +  Y+   + + +  F  +  A+++ VVTL T GYGD +P +   ++  
Sbjct: 134 TLFGVVLFAVALAAYVIERDIQPEK-FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLA 192

Query: 172 CVFILIGFGFV 182
              ++ G G  
Sbjct: 193 GAVMMSGIGIF 203

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 53.5 bits (128), Expect = 5e-08
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 113 FIGLVLYILAGIVIYLTNGNFKGKATFKPV-DALYFIVVTLCTIGYGDIVPDTTFTKLFT 171
           F   +  IL    +Y    + +    F  + DA ++ VV++ T+GYGD+VP T   K+  
Sbjct: 348 FFLFIGVILFSSAVYFAEADERDSQ-FPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVG 406

Query: 172 CVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERRMRIRIKVC 220
            +  + G     +L   L   +       F     E  E+   +++   
Sbjct: 407 SLCAIAG-----VLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSS 450

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 46.6 bits (110), Expect = 8e-06
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 15/132 (11%)

Query: 219 VCLALGVVIGCLAIGTVTVHFLEDMNWV-------DSFYLSVTSVTTVGYGDYAFTTLTG 271
             L   + IG +   +  V+F E            D+F+ +V S+TTVGYGD   TT+ G
Sbjct: 344 GLLIFFLFIGVILFSSA-VYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGG 402

Query: 272 RCFAIIWLL--VSTLA-----VARAFLYLTELRIEKRNRRIAKWVLQKKMTLGDLVAADL 324
           +    +  +  V T+A     +   F Y      E   +     V               
Sbjct: 403 KIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIPSSPDLKKS 462

Query: 325 DNDGSISKSEFV 336
            +  +ISKS+++
Sbjct: 463 RSASTISKSDYM 474

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score = 50.4 bits (120), Expect = 3e-07
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 113 FIGLVLYILAGIV---IYLTNGNFKGKATFK-PVDALYFIVVTLCTIGYGDIVPDTTFTK 168
            +   LY++   +    YL  G+    A      DA +F V T+ TIGYG ++P      
Sbjct: 51  TLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLAN 110

Query: 169 LFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLST 204
               +  L G   + +  + +          V  S+
Sbjct: 111 TLVTLEALCGMLGLAVAASLIYARFTRPTAGVLFSS 146

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 7/86 (8%)

Query: 212 RMRIRIKVCLALGVVIGCLAIGTVTVHFLEDM-------NWVDSFYLSVTSVTTVGYGDY 264
            +   + + L  G+ +   A+  +      D+       ++ D+F+ SV ++ T+GYG  
Sbjct: 43  TVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL 102

Query: 265 AFTTLTGRCFAIIWLLVSTLAVARAF 290
                       +  L   L +A A 
Sbjct: 103 IPIGPLANTLVTLEALCGMLGLAVAA 128

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 17/79 (21%), Positives = 30/79 (37%)

Query: 116 LVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFI 175
           L+L      +  L +     +       A +F V TL T+GYGD+ P T +      + I
Sbjct: 54  LLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEI 113

Query: 176 LIGFGFVDILLNGLVTYIC 194
            +G   + +        + 
Sbjct: 114 FVGMSSIALATGCAFIKMS 132

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 41/232 (17%), Positives = 72/232 (31%), Gaps = 52/232 (22%)

Query: 156 GYGDIVPD--TTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERRM 213
            Y DI+      F   F C  +       D+  + L     D    + +S    +   R+
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQ------DMPKSILSKEEIDH---IIMSKDAVSGTLRL 67

Query: 214 RIRIKVCLALGVVIGCL-AIGTVTVH-FLEDM-----NWVDSFYLSVT---SVTTVGYGD 263
                           L +     V  F+E++      ++ S   +     S+ T  Y +
Sbjct: 68  -------------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 264 YAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRIAKWVLQKKMTLGD----L 319
                           + +   V+R   YL +LR      R AK VL   + LG     +
Sbjct: 115 QRDRLYNDN------QVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGV-LGSGKTWV 166

Query: 320 VAADLDNDGSISKSEFVIYKLKEMGKIAEKD----ILQ-ICNQFDLIDDSKC 366
                 +     K +F I+ L  +      +    +LQ +  Q D    S+ 
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333

 Score = 46.7 bits (110), Expect = 5e-06
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 1/92 (1%)

Query: 104 STPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKP-VDALYFIVVTLCTIGYGDIVP 162
           S P+         V+      ++Y          +    V A +F V TL T+GYGD+ P
Sbjct: 59  SWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHP 118

Query: 163 DTTFTKLFTCVFILIGFGFVDILLNGLVTYIC 194
            T +      + I +G   + +    +     
Sbjct: 119 QTVYAHAIATLEIFVGMSGIALSTGLVFARFA 150

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333

 Score = 43.3 bits (101), Expect = 7e-05
 Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 7/101 (6%)

Query: 212 RMRIRIKVCLALGVVIGCLAIGTVTVHFLED-------MNWVDSFYLSVTSVTTVGYGDY 264
           ++   +       + +    +  +     +          +V +F+ SV ++ TVGYGD 
Sbjct: 57  KVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM 116

Query: 265 AFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEKRNRRI 305
              T+     A + + V    +A +   +       R + +
Sbjct: 117 HPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAKIM 157

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana} Length = 135

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 9/64 (14%)

Query: 315 TLGDLVA-ADLDNDGSISKSEFV---IYKLKEMGKIAEKDILQICNQFDLIDDSKCGKIT 370
           T   ++              + +     K+     ++E     +C  F L+ D +   IT
Sbjct: 4   TEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSE-----LCKGFSLLADPERHLIT 58

Query: 371 VADL 374
              L
Sbjct: 59  AESL 62

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens} Length = 204

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADL 374
             D +  G++   EF+      M +  E  I      F  +D S  G +TV DL
Sbjct: 81  KWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAA---FAKLDRSGDGVVTVDDL 131

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1} Length = 197

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADL 374
             D +  G I  ++F+   + +   + ++  L     F   D    GKI+V +L
Sbjct: 101 DIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIP---FKFFDIDGNGKISVEEL 151

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A Length = 143

 Score = 38.6 bits (91), Expect = 8e-04
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 9/67 (13%)

Query: 312 KKMTLGDLVA-ADLDNDGSISKSEFV---IYKLKEMGKIAEKDILQICNQFDLIDDSKCG 367
           KK  +  +++  D +  G ++  +F+     K+ E     +++IL+    F L DD + G
Sbjct: 40  KKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKD--TKEEILKA---FKLFDDDETG 94

Query: 368 KITVADL 374
           KI+  +L
Sbjct: 95  KISFKNL 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	378
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	99.97
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.96
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.62
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.61
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.6
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.59
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.59
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.58
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.56
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.55
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.54
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.53
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.53
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.52
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.52
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.51
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.5
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.49
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.49
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.48
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.48
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.46
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.33
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	99.29
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.27
1p7b_A	333	Integral membrane channel and cytosolic domains; t	99.24
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	99.23
1lnq_A	336	MTHK channels, potassium channel related protein;	99.22
1xl4_A	301	Inward rectifier potassium channel; integral membr	99.2
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.19
1lnq_A	336	MTHK channels, potassium channel related protein;	99.18
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.17
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.12
1p7b_A	333	Integral membrane channel and cytosolic domains; t	99.07
1xl4_A	301	Inward rectifier potassium channel; integral membr	99.07
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	99.06
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	99.06
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.01
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	98.97
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	98.79
3sya_A	340	G protein-activated inward rectifier potassium CH;	98.69
3sya_A	340	G protein-activated inward rectifier potassium CH;	98.53
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.5
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.42
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	97.94
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	97.91
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	93.72
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	92.9
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	92.86
3li6_A	66	Calcium-binding protein; calcium signaling protein	92.78
1k9u_A	78	Polcalcin PHL P 7; pollen allergen, calcium-bindin	92.69
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	92.33
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	92.27
1tiz_A	67	Calmodulin-related protein, putative; helix-turn-h	92.25
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	92.24
2kz2_A	94	Calmodulin, CAM; TR2C, metal binding protein; NMR	91.98
1yx7_A	83	Calsensin, LAN3-6 antigen; calcium-binding protein	91.88
3a4u_B	143	Multiple coagulation factor deficiency protein 2;	91.72
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	91.67
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	91.65
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	91.63
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	91.53
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	91.31
3i5g_C	159	Myosin catalytic light chain LC-1, mantle muscle;	91.3
1fi6_A	92	EH domain protein REPS1; EPS15 homology domain, EF	91.16
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	91.07
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	90.97
1rwy_A	109	Parvalbumin alpha; EF-hand, calcium-binding, calci	90.91
1ggw_A	140	Protein (CDC4P); light chain, cytokinesis, cell cy	90.85
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	90.82
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	90.75
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	90.73
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	90.71
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	90.69
2kyc_A	108	Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand p	90.6
1rro_A	108	RAT oncomodulin; calcium-binding protein; 1.30A {R	90.5
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	90.38
1j7q_A	86	CAVP, calcium vector protein; EF-hand family, calc	90.38
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	90.38
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	90.3
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	90.17
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	90.01
1s6j_A	87	CDPK, calcium-dependent protein kinase SK5; EF-han	90.01
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	89.96
3a4u_B	143	Multiple coagulation factor deficiency protein 2;	89.94
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	89.92
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	89.82
1c07_A	95	Protein (epidermal growth factor receptor pathway	89.79
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	89.77
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	89.74
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	89.71
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	89.6
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	89.6
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	89.53
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	89.53
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	89.52
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	89.47
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	89.47
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	89.45
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	89.39
2b1u_A	71	Calmodulin-like protein 5; CLSP, calmodulin-like S	89.39
1c07_A	95	Protein (epidermal growth factor receptor pathway	89.26
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	89.24
2ktg_A	85	Calmodulin, putative; ehcam, Ca-binding protein, p	89.11
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	89.1
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	89.09
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	89.02
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	88.98
1s6j_A	87	CDPK, calcium-dependent protein kinase SK5; EF-han	88.88
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	88.86
1fi6_A	92	EH domain protein REPS1; EPS15 homology domain, EF	88.85
2r2i_A	198	Guanylyl cyclase-activating protein 1; EF hand, GC	88.78
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	88.75
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	88.6
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	88.59
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	88.43
1s6c_A	183	KV4 potassium channel-interacting protein kchip1B;	88.41
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	88.37
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	88.37
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	88.35
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	88.32
1jba_A	204	GCAP-2, protein (guanylate cyclase activating prot	88.27
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	88.26
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	88.25
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	88.25
3fwb_A	161	Cell division control protein 31; gene gating, com	88.09
1wlz_A	105	DJBP, CAP-binding protein complex interacting prot	88.02
1avs_A	90	Troponin C; muscle contraction, calcium-activated,	87.98
1qjt_A	99	EH1, epidermal growth factor receptor substrate su	87.95
1fpw_A	190	Yeast frequenin, calcium-binding protein NCS-1; EF	87.91
1qv0_A	195	Obelin, OBL; photoprotein, bioluminescence, atomic	87.88
3khe_A	191	Calmodulin-like domain protein kinase isoform 3; c	87.86
2ggz_A	211	Guanylyl cyclase-activating protein 3; EF hand, gu	87.81
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	87.79
2jul_A	256	Calsenilin; EF-hand, calcium, LXXLL, DNA binding p	87.79
3fwb_A	161	Cell division control protein 31; gene gating, com	87.78
1jfj_A	134	Ehcabp, calcium-binding protein; EF-hand, helix-lo	87.76
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	87.75
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	87.65
1uhk_A	191	Aequorin 2, aequorin; EF-hand motif, complex, lumi	87.57
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	87.56
2kgr_A	111	Intersectin-1; structure, alternative splicing, ca	87.52
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	87.52
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	87.5
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	87.46
1bjf_A	193	Neurocalcin delta; calcium-binding, myristoylation	87.46
2ktg_A	85	Calmodulin, putative; ehcam, Ca-binding protein, p	87.46
3dd4_A	229	KV channel-interacting protein 4; EF-hands protein	87.45
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	87.37
1s1e_A	224	KV channel interacting protein 1; kchip, calcium-b	87.22
1alv_A	173	Calpain, S-camld; calcium binding, calmodulin like	87.21
1k94_A	165	Grancalcin; penta-EF-hand protein, calcium binding	87.19
2kgr_A	111	Intersectin-1; structure, alternative splicing, ca	87.16
2kn2_A	92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	87.14
1gjy_A	167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	87.12
2ehb_A	207	Calcineurin B-like protein 4; protein complex, Ca(	87.02
2hps_A	186	Coelenterazine-binding protein with bound coelent;	87.01
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	86.96
1j7q_A	86	CAVP, calcium vector protein; EF-hand family, calc	86.89
3i5g_B	153	Myosin regulatory light chain LC-2, mantle muscle;	86.89
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	86.78
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	86.77
1y1x_A	191	Leishmania major homolog of programmed cell death	86.75
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	86.68
1g8i_A	190	Frequenin, neuronal calcium sensor 1; calcium bind	86.53
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	86.51
2d58_A	107	Allograft inflammatory factor 1; EF-hand, metal bi	86.46
1rwy_A	109	Parvalbumin alpha; EF-hand, calcium-binding, calci	86.45
2i7a_A	174	Calpain 13; calcium-dependent cytoplasmic cysteine	86.43
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	86.41
1juo_A	198	Sorcin; calcium-binding proteins, penta-EF-hand, P	86.37
2jnf_A	158	Troponin C; stretch activated muscle contraction,	86.33
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	86.22
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	86.19
2kn2_A	92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	86.14
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	85.89
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	85.88
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	85.82
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	85.72
3mse_B	180	Calcium-dependent protein kinase, putative; CDPKS,	85.68
1wdc_B	156	Scallop myosin; calcium binding protein, muscle pr	85.61
2l2e_A	190	Calcium-binding protein NCS-1; NCS1P, myristoylate	85.61
1avs_A	90	Troponin C; muscle contraction, calcium-activated,	85.55
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	85.4
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	85.3
2ehb_A	207	Calcineurin B-like protein 4; protein complex, Ca(	85.3
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	85.25
3n22_A	98	Protein S100-A2; EF-hand, calcium-binding, zinc-bi	85.03
1eh2_A	106	EPS15; calcium binding, signaling domain, NPF bind	85.02
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	84.95
1qx2_A	76	Vitamin D-dependent calcium-binding protein, INTE;	84.71
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	84.64
1iq3_A	110	Ralbp1-interacting protein (partner of ralbp1); EF	84.5
2jnf_A	158	Troponin C; stretch activated muscle contraction,	84.47
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	84.45
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	84.35
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	84.21
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	84.11
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	84.1
2d8n_A	207	Recoverin; structural genomics, NPPSFA, national p	84.06
1bjf_A	193	Neurocalcin delta; calcium-binding, myristoylation	84.04
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	83.96
2lvv_A	226	Flagellar calcium-binding protein TB-24; EF-hand,	83.95
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	83.86
1k2h_A	93	S100A1, S-100 protein, alpha chain; non-covalent h	83.79
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	83.79
2ggz_A	211	Guanylyl cyclase-activating protein 3; EF hand, gu	83.69
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	83.56
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	83.45
2kyc_A	108	Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand p	83.36
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	83.19
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	83.18
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	83.08
1c7v_A	81	CAVP, calcium vector protein; EF-hand family, calc	82.96
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	82.84
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	82.58
3khe_A	191	Calmodulin-like domain protein kinase isoform 3; c	82.5
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	82.45
2f33_A	263	Calbindin; EF-hand, Ca2+-binding, metal binding pr	82.24
3nso_A	101	Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, meta	82.19
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	82.1
2r2i_A	198	Guanylyl cyclase-activating protein 1; EF hand, GC	81.96
3rm1_A	92	Protein S100-B; alpha-helical, EF hand, metal bind	81.77
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	81.75
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	81.61
1y1x_A	191	Leishmania major homolog of programmed cell death	81.57
1gjy_A	167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	81.55
1wy9_A	147	Allograft inflammatory factor 1; EF-hand, calucium	81.2
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	80.98
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	80.78
1jfj_A	134	Ehcabp, calcium-binding protein; EF-hand, helix-lo	80.78
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	80.72
1snl_A	103	Nucleobindin 1, calnuc; EF-hand, calcium-binding,	80.63
3i5g_C	159	Myosin catalytic light chain LC-1, mantle muscle;	80.58
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	80.56
2jq6_A	139	EH domain-containing protein 1; metal binding prot	80.46
3sg6_A	450	Gcamp2, myosin light chain kinase, green fluoresce	80.24
1alv_A	173	Calpain, S-camld; calcium binding, calmodulin like	80.2
2lnk_A	113	Protein S100-A4; EF-hand, calcium binding, all alp	80.09

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=99.97  E-value=1.7e-33  Score=266.10  Aligned_cols=170  Identities=26%  Similarity=0.347  Sum_probs=138.0

Q ss_pred             CCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhhhhHHHHHhhhhhhh---hhh
Q 040114          135 GKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDEN---RER  211 (378)
Q Consensus       135 ~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~l~r~~~~~---~~~  211 (378)
                      ..+.|+|.||+||+++|+|||||||++|.|+.||+++++|+++|++++.+.++.+++.+.....++..+.+++.   ++.
T Consensus        88 ~~~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  167 (280)
T 3ukm_A           88 GNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFHIRWGFSKQ  167 (280)
T ss_dssp             --CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTC------CCH
T ss_pred             CCCCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence            34679999999999999999999999999999999999999999999999999998877765433333333221   112


Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhcceeeccc-ccccccceeEEEEEEeccccCCcccCCcc-------hhHHHHHHHHHHH
Q 040114          212 RMRIRIKVCLALGVVIGCLAIGTVTVHFLE-DMNWVDSFYLSVTSVTTVGYGDYAFTTLT-------GRCFAIIWLLVST  283 (378)
Q Consensus       212 ~~~~~~~~~~~~~~~i~~~~~g~~~~~~~e-~~~~~da~Y~~~~T~tTVGyGD~~p~t~~-------gr~f~~~~il~g~  283 (378)
                      +......+.+.+..+++++++|+.+++.+| +|+|+||+||+++|+|||||||++|.+..       ||+|+++|+++|+
T Consensus       168 ~~~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl  247 (280)
T 3ukm_A          168 VVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGL  247 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHH
Confidence            222233344445556677889999999998 89999999999999999999999999986       5999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 040114          284 LAVARAFLYLTELRIEKRNRR  304 (378)
Q Consensus       284 ~~va~~~~~l~~~~~~~~~r~  304 (378)
                      ++++..++.+++....++.++
T Consensus       248 ~~~~~~~~~i~~~~~~~~l~~  268 (280)
T 3ukm_A          248 IAMLVVLETFCELHELKKFRK  268 (280)
T ss_dssp             HHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998877766443

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.96  E-value=1e-31  Score=257.57  Aligned_cols=160  Identities=20%  Similarity=0.339  Sum_probs=128.1

Q ss_pred             CCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhhhhHHHHHhh---hhhhhh--hh
Q 040114          137 ATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLS---TMDENR--ER  211 (378)
Q Consensus       137 ~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~l~r---~~~~~~--~~  211 (378)
                      +.|+|.+|+||+++|+|||||||++|.|+.||+++++|+++|++++++.++.+++.+.+...+...+   ...+.+  +.
T Consensus       112 ~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~le~~~~~~~~~~~  191 (309)
T 3um7_A          112 SAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPE  191 (309)
T ss_dssp             -CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTC--CC
T ss_pred             CCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccchh
Confidence            4599999999999999999999999999999999999999999999999999988876543332211   111111  11


Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhcceeecccccccccceeEEEEEEeccccCCcccCCcchh------HHHHHHHHHHHHH
Q 040114          212 RMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGR------CFAIIWLLVSTLA  285 (378)
Q Consensus       212 ~~~~~~~~~~~~~~~i~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr------~f~~~~il~g~~~  285 (378)
                      +.+....+...+..+++++++|+.+++..|+|+|.||+||+++|+|||||||++|.+..||      +|+++|+++|+++
T Consensus       192 ~~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~  271 (309)
T 3um7_A          192 LVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAY  271 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHH
Confidence            1222222223333345667889999999999999999999999999999999999999887      5999999999999


Q ss_pred             HHHHHHHHHHH
Q 040114          286 VARAFLYLTEL  296 (378)
Q Consensus       286 va~~~~~l~~~  296 (378)
                      +++.++.+++.
T Consensus       272 ~a~~~~~i~~~  282 (309)
T 3um7_A          272 FASVLTTIGNW  282 (309)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987765

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.62  E-value=1.2e-16  Score=129.47  Aligned_cols=93  Identities=20%  Similarity=0.154  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhh
Q 040114          106 PLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDIL  185 (378)
Q Consensus       106 ~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~  185 (378)
                      +.++..+..++++.++.+.+++..|+..++...++|.||+||+++|+|||||||++|.|+.||+++++++++|+.++++.
T Consensus         6 r~~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~   85 (103)
T 2k1e_A            6 REAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALV   85 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence            33343333344444444444556666545566689999999999999999999999999999999999999999999999


Q ss_pred             hcchhhhhhhhHH
Q 040114          186 LNGLVTYICDRQE  198 (378)
Q Consensus       186 ~~~~~~~l~~~~~  198 (378)
                      ++.+.+.+.+..+
T Consensus        86 ~~~i~~~~~~~~~   98 (103)
T 2k1e_A           86 TAALATDFVRREE   98 (103)
T ss_dssp             HHHHHTTGGGHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888776543

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.61  E-value=9.1e-17  Score=137.18  Aligned_cols=94  Identities=20%  Similarity=0.360  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhh
Q 040114          106 PLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDIL  185 (378)
Q Consensus       106 ~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~  185 (378)
                      +.++..++++++++++.+++++..+....+...|+|.+|+||+++|+|||||||++|.|+.||+++++++++|+++++++
T Consensus         6 r~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~   85 (139)
T 3eff_K            6 RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLV   85 (139)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            34444444444555555555557776656667799999999999999999999999999999999999999999999999


Q ss_pred             hcchhhhhhhhHHH
Q 040114          186 LNGLVTYICDRQEA  199 (378)
Q Consensus       186 ~~~~~~~l~~~~~~  199 (378)
                      ++.+++.+.+...+
T Consensus        86 ~~~i~~~~~~~~~~   99 (139)
T 3eff_K           86 TAALATWFVGREQE   99 (139)
T ss_dssp             HHHHTTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999887665443

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.60  E-value=1e-16  Score=129.92  Aligned_cols=84  Identities=23%  Similarity=0.135  Sum_probs=73.0

Q ss_pred             HHHHHHHHHhhhhhhcceeeccccc-------ccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHH
Q 040114          219 VCLALGVVIGCLAIGTVTVHFLEDM-------NWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFL  291 (378)
Q Consensus       219 ~~~~~~~~i~~~~~g~~~~~~~e~~-------~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~  291 (378)
                      +..++..+++++++++.+++..|++       +|.||+||+++|+|||||||++|.+..||+++++++++|+.+++..++
T Consensus         8 ~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~   87 (103)
T 2k1e_A            8 AQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTA   87 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555666677888999999986       899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 040114          292 YLTELRIEKRN  302 (378)
Q Consensus       292 ~l~~~~~~~~~  302 (378)
                      .+++...++..
T Consensus        88 ~i~~~~~~~~~   98 (103)
T 2k1e_A           88 ALATDFVRREE   98 (103)
T ss_dssp             HHHTTGGGHHH
T ss_pred             HHHHHHHHHHH
Confidence            99887665543

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.59  E-value=1.3e-16  Score=127.99  Aligned_cols=80  Identities=28%  Similarity=0.381  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhhhhhhcceeecccccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          219 VCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRI  298 (378)
Q Consensus       219 ~~~~~~~~i~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~  298 (378)
                      +...+.++++++++|+.+++..|+|++.||+||+++|+|||||||++|.+..||+++++++++|+.+++..++.+++...
T Consensus         7 ~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~   86 (97)
T 3ouf_A            7 FQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ   86 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44455556667788999999999999999999999999999999999999999999999999999999999998886543

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.59  E-value=8.3e-17  Score=125.13  Aligned_cols=76  Identities=32%  Similarity=0.511  Sum_probs=69.2

Q ss_pred             HHHHHHHhhhhhhcceeecccccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          221 LALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTEL  296 (378)
Q Consensus       221 ~~~~~~i~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~  296 (378)
                      ..+.+++.+++.|+.+++..|+|++.||+||+++|+|||||||++|.|..||++++++++.|+.+++..++.+++.
T Consensus         5 ~~~~l~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~   80 (82)
T 3ldc_A            5 RILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEF   80 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556677889999999999999999999999999999999999999999999999999999999999988865

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.58  E-value=2.6e-16  Score=134.36  Aligned_cols=83  Identities=23%  Similarity=0.305  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhhhhhhcceeecccc-------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHH
Q 040114          219 VCLALGVVIGCLAIGTVTVHFLED-------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFL  291 (378)
Q Consensus       219 ~~~~~~~~i~~~~~g~~~~~~~e~-------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~  291 (378)
                      +..++.++++++++++.+++..|+       |+|.||+||+++|+|||||||++|.|..||+++++++++|+++++..++
T Consensus         8 ~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~   87 (139)
T 3eff_K            8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTA   87 (139)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            344445556667788888998987       9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 040114          292 YLTELRIEKR  301 (378)
Q Consensus       292 ~l~~~~~~~~  301 (378)
                      .+++...+..
T Consensus        88 ~i~~~~~~~~   97 (139)
T 3eff_K           88 ALATWFVGRE   97 (139)
T ss_dssp             HHTTTTTHHH
T ss_pred             HHHHHHHHHH
Confidence            9987655543

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.56  E-value=8.6e-17  Score=137.10  Aligned_cols=64  Identities=27%  Similarity=0.313  Sum_probs=56.6

Q ss_pred             ceeecccccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          235 VTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRI  298 (378)
Q Consensus       235 ~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~  298 (378)
                      ..+...|.|+|.||+||+++|+|||||||++|.|..||+++++++++|+++++..++.+++...
T Consensus        34 ~~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~   97 (137)
T 4h33_A           34 MVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFR   97 (137)
T ss_dssp             HHHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333445699999999999999999999999999999999999999999999999998886543

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.55  E-value=7e-16  Score=127.36  Aligned_cols=77  Identities=26%  Similarity=0.358  Sum_probs=68.7

Q ss_pred             HHHHHHHHhhhhhhcceeecccccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          220 CLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTEL  296 (378)
Q Consensus       220 ~~~~~~~i~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~  296 (378)
                      ...+.++++++++|+++++..|+|++.||+||+++|+|||||||++|.|..||+++++++++|+.+++..++.+++.
T Consensus        25 ~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~  101 (114)
T 2q67_A           25 QVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVN  101 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555667788899999999999999999999999999999999999999999999999999999999888865

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.54  E-value=2.8e-16  Score=126.04  Aligned_cols=83  Identities=40%  Similarity=0.711  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhh
Q 040114          106 PLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDIL  185 (378)
Q Consensus       106 ~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~  185 (378)
                      ++.+...++++++++++|++.|..      .|+|+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++.
T Consensus         4 ~~~~~~~~~~~~~~~~~g~~~~~~------~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~   77 (97)
T 3ouf_A            4 DKEFQVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGF   77 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHH------HSCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            345666777777888888888843      25599999999999999999999999999999999999999999999999


Q ss_pred             hcchhhhhh
Q 040114          186 LNGLVTYIC  194 (378)
Q Consensus       186 ~~~~~~~l~  194 (378)
                      ++.+.+.+.
T Consensus        78 i~~i~~~~~   86 (97)
T 3ouf_A           78 IHKLAVNVQ   86 (97)
T ss_dssp             HHHHHHHTH
T ss_pred             HHHHHHHHh
Confidence            988876554

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.53  E-value=1e-15  Score=127.88  Aligned_cols=80  Identities=19%  Similarity=0.285  Sum_probs=70.2

Q ss_pred             HHHHhhhhhhcceeecccc-------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          224 GVVIGCLAIGTVTVHFLED-------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTEL  296 (378)
Q Consensus       224 ~~~i~~~~~g~~~~~~~e~-------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~  296 (378)
                      ..+++++.+++.+++..|+       |++.||+||+++|+|||||||++|.|..||++++++++.|+.+++..++.+++.
T Consensus        34 ~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~  113 (122)
T 2ih3_C           34 VLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATW  113 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556678888888886       899999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q 040114          297 RIEKRNR  303 (378)
Q Consensus       297 ~~~~~~r  303 (378)
                      ..+..++
T Consensus       114 ~~~~~~~  120 (122)
T 2ih3_C          114 FVGREQE  120 (122)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7766543

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.53  E-value=7.2e-16  Score=128.79  Aligned_cols=82  Identities=21%  Similarity=0.401  Sum_probs=68.5

Q ss_pred             HHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhhhh
Q 040114          117 VLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDR  196 (378)
Q Consensus       117 ~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~  196 (378)
                      ++.++.+.++|..|+...+...|++.||+||+++|+|||||||++|.|+.||+++++++++|+.++++.++.+.+.+.+.
T Consensus        38 ~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~  117 (122)
T 2ih3_C           38 IVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR  117 (122)
T ss_dssp             HHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555777665566679999999999999999999999999999999999999999999999999998877755


Q ss_pred             HH
Q 040114          197 QE  198 (378)
Q Consensus       197 ~~  198 (378)
                      .+
T Consensus       118 ~~  119 (122)
T 2ih3_C          118 EQ  119 (122)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.52  E-value=4.8e-16  Score=132.46  Aligned_cols=84  Identities=24%  Similarity=0.503  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhc
Q 040114          108 IVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLN  187 (378)
Q Consensus       108 ~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~  187 (378)
                      +...+++++++.+++++.+++.+     .+.|+|.||+||+++|+|||||||++|.|+.||+++++++++|+++++++++
T Consensus        16 l~~~l~~~~~~~~~~~~~~~~~e-----~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~   90 (137)
T 4h33_A           16 LNRFLMIFVLLVIIIPVPMVFIE-----PEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITS   90 (137)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHC-----SSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444445555555443     3579999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhh
Q 040114          188 GLVTYICDR  196 (378)
Q Consensus       188 ~~~~~l~~~  196 (378)
                      .+++.+.+.
T Consensus        91 ~i~~~~~~~   99 (137)
T 4h33_A           91 TITNFFRCK   99 (137)
T ss_dssp             HHHTTTTTT
T ss_pred             HHHHHHHHH
Confidence            998877543

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.52  E-value=2.6e-15  Score=129.55  Aligned_cols=77  Identities=25%  Similarity=0.361  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhhhhhhcceeecccccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          219 VCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTE  295 (378)
Q Consensus       219 ~~~~~~~~i~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~  295 (378)
                      +..++.++++++++|++++...|+|+|.||+||+++|+|||||||++|.|..||+|+++++++|+++++..++.+++
T Consensus        27 ~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~  103 (148)
T 3vou_A           27 FQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAV  103 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555666788888999999999999999999999999999999999999999999999999999999988875

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.51  E-value=1e-15  Score=132.98  Aligned_cols=87  Identities=29%  Similarity=0.466  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHhh-hhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchh
Q 040114          112 AFIGLVLYILAGIV-IYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLV  190 (378)
Q Consensus       112 ~~~~l~~~l~~g~~-~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~  190 (378)
                      .+++++++++++++ +|..|....+...++|.||+||+++|+|||||||++|.|+.||+++++++++|++++++.++.+.
T Consensus        55 ~~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~  134 (155)
T 2a9h_A           55 ATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVA  134 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444 55666655556678999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhhHH
Q 040114          191 TYICDRQE  198 (378)
Q Consensus       191 ~~l~~~~~  198 (378)
                      +.+.+...
T Consensus       135 ~~~~~~~~  142 (155)
T 2a9h_A          135 TWFVGREQ  142 (155)
T ss_dssp             HHHHSCCC
T ss_pred             HHHHHHHH
Confidence            87775543

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.50  E-value=5.7e-16  Score=120.38  Aligned_cols=76  Identities=26%  Similarity=0.521  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhh
Q 040114          112 AFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVT  191 (378)
Q Consensus       112 ~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~  191 (378)
                      ++++++.+++.+++.|..      .|.|++.||+||+++|+|||||||++|.|+.||+++++++++|++++++.++.+.+
T Consensus         6 ~~~l~~~~~~~g~~~~~~------~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~   79 (82)
T 3ldc_A            6 ILLLVLAVIIYGTAGFHF------IEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLE   79 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH------HhcCCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556667777777722      24589999999999999999999999999999999999999999999999988876


Q ss_pred             hh
Q 040114          192 YI  193 (378)
Q Consensus       192 ~l  193 (378)
                      .+
T Consensus        80 ~l   81 (82)
T 3ldc_A           80 FL   81 (82)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.49  E-value=7.7e-16  Score=127.10  Aligned_cols=79  Identities=39%  Similarity=0.728  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcc
Q 040114          109 VQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNG  188 (378)
Q Consensus       109 ~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~  188 (378)
                      +...++++++++++|+++|..      .|.|+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++.++.
T Consensus        24 ~~~~~~~~~~~~~~g~~~~~~------~e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~   97 (114)
T 2q67_A           24 FQVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHK   97 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH------HSCCCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------hcCCCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777788888888843      24599999999999999999999999999999999999999999999999988


Q ss_pred             hhhhh
Q 040114          189 LVTYI  193 (378)
Q Consensus       189 ~~~~l  193 (378)
                      +.+.+
T Consensus        98 l~~~~  102 (114)
T 2q67_A           98 LAVNV  102 (114)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87665

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.49  E-value=1.6e-15  Score=131.78  Aligned_cols=77  Identities=26%  Similarity=0.414  Sum_probs=68.5

Q ss_pred             HHHHhhhhhhcceeeccccc-------ccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          224 GVVIGCLAIGTVTVHFLEDM-------NWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTEL  296 (378)
Q Consensus       224 ~~~i~~~~~g~~~~~~~e~~-------~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~  296 (378)
                      ..+++++++++.+++..|++       ++.||+||+++|+|||||||++|.|..||+++++++++|+++++..++.+++.
T Consensus        57 ~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~  136 (155)
T 2a9h_A           57 VLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATW  136 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455567788889999986       89999999999999999999999999999999999999999999999999987


Q ss_pred             HHHH
Q 040114          297 RIEK  300 (378)
Q Consensus       297 ~~~~  300 (378)
                      ..++
T Consensus       137 ~~~~  140 (155)
T 2a9h_A          137 FVGR  140 (155)
T ss_dssp             HHSC
T ss_pred             HHHH
Confidence            6653

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.48  E-value=2.9e-15  Score=129.20  Aligned_cols=79  Identities=39%  Similarity=0.661  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhc
Q 040114          108 IVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLN  187 (378)
Q Consensus       108 ~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~  187 (378)
                      .+..+++++++++++|+++|..      .|.|+|.||+||+++|+|||||||++|.|+.||+++++++++|+++++++++
T Consensus        26 ~~~~~~~~~~~~~~~g~~~~~~------~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~   99 (148)
T 3vou_A           26 EFQVLFVLTFLTLTSGTIFYST------VEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIH   99 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH------TSCCCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            4555667777788888888843      3459999999999999999999999999999999999999999999999988


Q ss_pred             chhhh
Q 040114          188 GLVTY  192 (378)
Q Consensus       188 ~~~~~  192 (378)
                      .+...
T Consensus       100 ~~~~~  104 (148)
T 3vou_A          100 KLAVN  104 (148)
T ss_dssp             HHHCC
T ss_pred             HHHHH
Confidence            87753

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.48  E-value=3.6e-16  Score=137.52  Aligned_cols=79  Identities=23%  Similarity=0.418  Sum_probs=66.5

Q ss_pred             HHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhhhhHH
Q 040114          120 ILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQE  198 (378)
Q Consensus       120 l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~~~  198 (378)
                      ++.++++|..+....+...|+|.||+||+++|+|||||||++|.|+.||+++++++++|+++++++++.+++.+.+...
T Consensus        47 ~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~  125 (166)
T 3pjs_K           47 LAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQ  125 (166)
T ss_dssp             TTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHH
T ss_pred             HHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444466665555667999999999999999999999999999999999999999999999999999988775543

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.46  E-value=5.8e-16  Score=136.16  Aligned_cols=76  Identities=24%  Similarity=0.326  Sum_probs=67.3

Q ss_pred             HHHHHhhhhhhcceeecccc-------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          223 LGVVIGCLAIGTVTVHFLED-------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTE  295 (378)
Q Consensus       223 ~~~~i~~~~~g~~~~~~~e~-------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~  295 (378)
                      +..+++++++++.+++..|+       |+|.||+||+++|+|||||||++|.|..||+++++++++|+++++..++.+++
T Consensus        39 ~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~  118 (166)
T 3pjs_K           39 TVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALAT  118 (166)
T ss_dssp             SSSSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445567788888999987       99999999999999999999999999999999999999999999999988886


Q ss_pred             HHH
Q 040114          296 LRI  298 (378)
Q Consensus       296 ~~~  298 (378)
                      ...
T Consensus       119 ~~~  121 (166)
T 3pjs_K          119 WFV  121 (166)
T ss_dssp             SSS
T ss_pred             HHH
Confidence            544

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.33  E-value=1.4e-13  Score=125.99  Aligned_cols=88  Identities=23%  Similarity=0.366  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhc
Q 040114          108 IVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLN  187 (378)
Q Consensus       108 ~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~  187 (378)
                      +......+++..++.++.+|..|++..+...|+|.+|+||+++|+|||||||++|.|+.||++++++++.|+.++++.++
T Consensus       133 l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~  212 (223)
T 1orq_C          133 FYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIG  212 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555666667677777655555668999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhh
Q 040114          188 GLVTYICD  195 (378)
Q Consensus       188 ~~~~~l~~  195 (378)
                      .+++.+.+
T Consensus       213 ~i~~~~~~  220 (223)
T 1orq_C          213 TVSNMFQK  220 (223)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98877654

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=99.29  E-value=2.3e-13  Score=128.48  Aligned_cols=85  Identities=18%  Similarity=0.402  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHhhhhh-cccccCCCCCCCccceeeeeeeeeeeeecccccccCccC-------ceeeehhhhhhhhhh
Q 040114          111 QAFIGLVLYILAGIVIYL-TNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFT-------KLFTCVFILIGFGFV  182 (378)
Q Consensus       111 ~~~~~l~~~l~~g~~~~~-~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g-------~~~~~~~~l~Gi~~~  182 (378)
                      +.++++++++++|+++|. .|      +.|+|.||+|||++|+|||||||++|.++.|       |+++++|+++|++++
T Consensus       177 l~~~~~~~~~~~ga~~~~~~E------~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~  250 (280)
T 3ukm_A          177 LGFVTVSCFFFIPAAVFSVLE------DDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAM  250 (280)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHS------SSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHh------cCCchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHH
Confidence            344555667777888873 32      2699999999999999999999999999965       999999999999999


Q ss_pred             hhhhcchhhhhhhhHHHHH
Q 040114          183 DILLNGLVTYICDRQEAVF  201 (378)
Q Consensus       183 ~~~~~~~~~~l~~~~~~~l  201 (378)
                      ++.++.+.+.+..++....
T Consensus       251 ~~~~~~i~~~~~~~~l~~~  269 (280)
T 3ukm_A          251 LVVLETFCELHELKKFRKM  269 (280)
T ss_dssp             HHHHHHHHTSHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999887766554443

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.27  E-value=1.7e-12  Score=118.81  Aligned_cols=78  Identities=23%  Similarity=0.342  Sum_probs=67.8

Q ss_pred             HHHHHHhhhhhhcceeecccc-------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 040114          222 ALGVVIGCLAIGTVTVHFLED-------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLT  294 (378)
Q Consensus       222 ~~~~~i~~~~~g~~~~~~~e~-------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~  294 (378)
                      .+..+++++.+++++++..|+       +++.||+||+++|+|||||||++|.|..||++++++++.|+++++..++.++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~  215 (223)
T 1orq_C          136 LFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVS  215 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444556677788888887       8999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHH
Q 040114          295 ELRIE  299 (378)
Q Consensus       295 ~~~~~  299 (378)
                      +...+
T Consensus       216 ~~~~~  220 (223)
T 1orq_C          216 NMFQK  220 (223)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=99.24  E-value=1.1e-12  Score=127.23  Aligned_cols=94  Identities=20%  Similarity=0.297  Sum_probs=74.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhhhhhcccc-cCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhh
Q 040114          103 KSTPLIVQQAFIGLVLYILAGIVIYLTNGN-FKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGF  181 (378)
Q Consensus       103 ~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~-~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~  181 (378)
                      .+++.++.++++++++..++++++|+.+.. ..+.+.++|.+|+||+++|+|||||||++|.++.||+++++++++|+.+
T Consensus        58 ~~~~~ll~~~~~~~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~  137 (333)
T 1p7b_A           58 VSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSG  137 (333)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence            356666655555555555556666755543 3444567899999999999999999999999999999999999999999


Q ss_pred             hhhhhcchhhhhhhh
Q 040114          182 VDILLNGLVTYICDR  196 (378)
Q Consensus       182 ~~~~~~~~~~~l~~~  196 (378)
                      ++++++.+...+.+.
T Consensus       138 ~a~~ig~i~~~~~~~  152 (333)
T 1p7b_A          138 IALSTGLVFARFARP  152 (333)
T ss_dssp             HHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998887766544

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=99.23  E-value=1.1e-12  Score=135.78  Aligned_cols=74  Identities=20%  Similarity=0.386  Sum_probs=59.8

Q ss_pred             Hhhhhhhcceeec----ccc--cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 040114          227 IGCLAIGTVTVHF----LED--MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLY-LTELRIE  299 (378)
Q Consensus       227 i~~~~~g~~~~~~----~e~--~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~-l~~~~~~  299 (378)
                      ++++++++++|+.    .|+  |+|+||+||+++|+|||||||++|.|..||+|+++++++|++++++.++. +++..++
T Consensus        28 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  107 (565)
T 4gx0_A           28 LVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLA  107 (565)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444    565  99999999999999999999999999999999999999999999988887 5555444


Q ss_pred             H
Q 040114          300 K  300 (378)
Q Consensus       300 ~  300 (378)
                      .
T Consensus       108 ~  108 (565)
T 4gx0_A          108 P  108 (565)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=99.22  E-value=4.3e-14  Score=137.14  Aligned_cols=79  Identities=32%  Similarity=0.549  Sum_probs=68.5

Q ss_pred             HHHHHHhhhhhhcceeecccccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          222 ALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEK  300 (378)
Q Consensus       222 ~~~~~i~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~~~  300 (378)
                      .+.++++++++|+++|+..|+|+|.||+||+++|+|||||||++|.|..||+|+++++++|+++++..++.+++...++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~  101 (336)
T 1lnq_A           23 ILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR  101 (336)
T ss_dssp             STTTTTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556678899999999999999999999999999999999999999999999999999999999998888765543

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=99.20  E-value=1.1e-12  Score=125.56  Aligned_cols=92  Identities=20%  Similarity=0.226  Sum_probs=70.8

Q ss_pred             ChHHHHHHHHHH-HHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhh
Q 040114          104 STPLIVQQAFIG-LVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFV  182 (378)
Q Consensus       104 ~~~~~~~~~~~~-l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~  182 (378)
                      +++.++.+++++ ++.++++|++.|+.++...+...++|.+|+||+++|+|||||||++|.++.||+++++++++|+.++
T Consensus        45 ~~~~ll~~~~~~~~~~~l~fa~ly~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~  124 (301)
T 1xl4_A           45 SWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGL  124 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence            455544444333 3445666666444444444556789999999999999999999999999999999999999999999


Q ss_pred             hhhhcchhhhhhh
Q 040114          183 DILLNGLVTYICD  195 (378)
Q Consensus       183 ~~~~~~~~~~l~~  195 (378)
                      ++.++.+...+.+
T Consensus       125 a~~~g~v~~~~~~  137 (301)
T 1xl4_A          125 AVAASLIYARFTR  137 (301)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHh
Confidence            9998877766543

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.19  E-value=1e-12  Score=125.89  Aligned_cols=77  Identities=25%  Similarity=0.584  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCce------eeehhhhhhhhhhhhhh
Q 040114          113 FIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL------FTCVFILIGFGFVDILL  186 (378)
Q Consensus       113 ~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~------~~~~~~l~Gi~~~~~~~  186 (378)
                      ++.+++++++++++|..      .|.|+|.||+||+++|+|||||||++|.+..||.      ++++|+++|++++++++
T Consensus       203 ~~~~~~~l~~ga~~~~~------~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~  276 (309)
T 3um7_A          203 LIGCLLFVLTPTFVFCY------MEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVL  276 (309)
T ss_dssp             HHHHHHHTHHHHHHHHH------HHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH------hcCCCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            34445667777777732      3579999999999999999999999999999986      99999999999999999


Q ss_pred             cchhhhhhh
Q 040114          187 NGLVTYICD  195 (378)
Q Consensus       187 ~~~~~~l~~  195 (378)
                      +.+++.+..
T Consensus       277 ~~i~~~~~~  285 (309)
T 3um7_A          277 TTIGNWLRV  285 (309)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHHHH
Confidence            987776543

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=99.18  E-value=1.8e-13  Score=132.70  Aligned_cols=83  Identities=24%  Similarity=0.459  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhh
Q 040114          112 AFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVT  191 (378)
Q Consensus       112 ~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~  191 (378)
                      .++++++++++|+++|..      .|.|+|.+|+||+++|+|||||||++|.|+.||+++++++++|++++++.++.+.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~------~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~   96 (336)
T 1lnq_A           23 ILLLVLAVIIYGTAGFHF------IEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE   96 (336)
T ss_dssp             STTTTTTSHHHHTTTTTT------SSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHH------HhCCCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445567777777732      35699999999999999999999999999999999999999999999999999988


Q ss_pred             hhhhhHHHH
Q 040114          192 YICDRQEAV  200 (378)
Q Consensus       192 ~l~~~~~~~  200 (378)
                      .+.+.+.+.
T Consensus        97 ~~~~~~~~~  105 (336)
T 1lnq_A           97 FLINREQMK  105 (336)
T ss_dssp             TC-------
T ss_pred             HHHHHHHHH
Confidence            877655444

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.17  E-value=8.6e-12  Score=121.76  Aligned_cols=83  Identities=14%  Similarity=0.085  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhhhhhhcceeeccccc-------ccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHH
Q 040114          219 VCLALGVVIGCLAIGTVTVHFLEDM-------NWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFL  291 (378)
Q Consensus       219 ~~~~~~~~i~~~~~g~~~~~~~e~~-------~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~  291 (378)
                      +...+.++++++.+++++++.+|++       ++.||+||+++|+|||||||++|.|..||++++++++.|++++++.++
T Consensus       129 l~~~~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~  208 (355)
T 3beh_A          129 LIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAG  208 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444445566777788888864       789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 040114          292 YLTELRIEKR  301 (378)
Q Consensus       292 ~l~~~~~~~~  301 (378)
                      .+++...++.
T Consensus       209 ~i~~~~~~~~  218 (355)
T 3beh_A          209 ILATGFYQEV  218 (355)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988766544

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.12  E-value=4e-12  Score=124.10  Aligned_cols=92  Identities=18%  Similarity=0.316  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhh
Q 040114          105 TPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDI  184 (378)
Q Consensus       105 ~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~  184 (378)
                      .+.+.....+++++.++.++++|..++...+....+|.+|+||+++|+|||||||++|.|+.||+++++++++|+.++++
T Consensus       126 ~~~l~~~~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~  205 (355)
T 3beh_A          126 ARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGL  205 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence            44555556666666677777777666543333345899999999999999999999999999999999999999999999


Q ss_pred             hhcchhhhhhhh
Q 040114          185 LLNGLVTYICDR  196 (378)
Q Consensus       185 ~~~~~~~~l~~~  196 (378)
                      .++.+++.+.+.
T Consensus       206 ~~~~i~~~~~~~  217 (355)
T 3beh_A          206 WAGILATGFYQE  217 (355)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999888776544

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=99.07  E-value=2.6e-11  Score=117.54  Aligned_cols=80  Identities=18%  Similarity=0.218  Sum_probs=62.0

Q ss_pred             HHHHHHHHHhhhhhhcceeeccc-------ccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHH
Q 040114          219 VCLALGVVIGCLAIGTVTVHFLE-------DMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFL  291 (378)
Q Consensus       219 ~~~~~~~~i~~~~~g~~~~~~~e-------~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~  291 (378)
                      +.+++..+++++++++++|+...       ..+|.||+||+++|+|||||||++|.+..||+++++++++|+++++..++
T Consensus        64 l~~~~~~~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig  143 (333)
T 1p7b_A           64 FASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTG  143 (333)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444455555554322       24799999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q 040114          292 YLTELRI  298 (378)
Q Consensus       292 ~l~~~~~  298 (378)
                      .+.....
T Consensus       144 ~i~~~~~  150 (333)
T 1p7b_A          144 LVFARFA  150 (333)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            8776543

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=99.07  E-value=1.6e-11  Score=117.57  Aligned_cols=55  Identities=22%  Similarity=0.308  Sum_probs=51.1

Q ss_pred             cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          243 MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELR  297 (378)
Q Consensus       243 ~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~  297 (378)
                      ++|.||+||+++|+|||||||++|.+..||+++++++++|+.+++..++.+....
T Consensus        81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~  135 (301)
T 1xl4_A           81 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF  135 (301)
T ss_dssp             TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999988766543

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=99.06  E-value=8.7e-12  Score=129.13  Aligned_cols=60  Identities=23%  Similarity=0.496  Sum_probs=53.6

Q ss_pred             CCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcc-hhhhhhhh
Q 040114          137 ATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNG-LVTYICDR  196 (378)
Q Consensus       137 ~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~-~~~~l~~~  196 (378)
                      +.|+|++|+||+++|+|||||||++|.|+.||+++++++++|++++++.++. +.+++...
T Consensus        48 ~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  108 (565)
T 4gx0_A           48 RAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAP  108 (565)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             CCCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999999999998887 55555443

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=99.06  E-value=1.3e-11  Score=119.07  Aligned_cols=79  Identities=22%  Similarity=0.349  Sum_probs=62.3

Q ss_pred             HHHHHHHHhhhhhccccc--CCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhh
Q 040114          116 LVLYILAGIVIYLTNGNF--KGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYI  193 (378)
Q Consensus       116 l~~~l~~g~~~~~~~~~~--~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l  193 (378)
                      ++.++++|.+  +.++..  .+...|+|.+|+||+++|+|||||||++|.|..||+++++++++|+.++++.++.+...+
T Consensus        54 ~~~~~~fa~~--~~eg~~~~~~~~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~  131 (321)
T 2qks_A           54 LLLNTAFATL--YMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKM  131 (321)
T ss_dssp             HHHHHHHHHH--HHTSSSCBTTCSSTTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--HHcCCccccCcCCcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555522  333321  233457999999999999999999999999999999999999999999999998887766


Q ss_pred             hhh
Q 040114          194 CDR  196 (378)
Q Consensus       194 ~~~  196 (378)
                      .+.
T Consensus       132 ~~~  134 (321)
T 2qks_A          132 SQP  134 (321)
T ss_dssp             HSC
T ss_pred             HHH
Confidence            543

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.01  E-value=3.8e-11  Score=123.15  Aligned_cols=90  Identities=21%  Similarity=0.300  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhh
Q 040114          107 LIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILL  186 (378)
Q Consensus       107 ~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~  186 (378)
                      .+..++++++++++++|+++|..+.........++.+|+||+++|+|||||||++|.|+.|++++++++++|+.++++.+
T Consensus       342 ~l~~ll~~l~i~~~if~~~~~~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~i  421 (514)
T 2r9r_B          342 ELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPV  421 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHHHHhhhheeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHH
Confidence            33444445555566777777766654444455689999999999999999999999999999999999999999999998


Q ss_pred             cchhhhhhhh
Q 040114          187 NGLVTYICDR  196 (378)
Q Consensus       187 ~~~~~~l~~~  196 (378)
                      +.+++.+...
T Consensus       422 avI~~~f~~~  431 (514)
T 2r9r_B          422 PVIVSNFNYF  431 (514)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887655433

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=98.97  E-value=8.5e-11  Score=113.42  Aligned_cols=57  Identities=25%  Similarity=0.285  Sum_probs=52.3

Q ss_pred             ccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          242 DMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRI  298 (378)
Q Consensus       242 ~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~  298 (378)
                      +++|.||+||+++|+|||||||++|.+..||+++++++++|+++++..++.+.....
T Consensus        76 ~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~  132 (321)
T 2qks_A           76 PAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMS  132 (321)
T ss_dssp             STTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            358999999999999999999999999999999999999999999999988876543

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=98.79  E-value=1.2e-09  Score=112.12  Aligned_cols=72  Identities=28%  Similarity=0.402  Sum_probs=58.8

Q ss_pred             Hhhhhhhcceeecccc-------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          227 IGCLAIGTVTVHFLED-------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIE  299 (378)
Q Consensus       227 i~~~~~g~~~~~~~e~-------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~~  299 (378)
                      +++.++|++++ ..|+       .++.+|+||+++|+|||||||++|.+..||+|+++++++|+++++..++.+.+...+
T Consensus       352 i~~~if~~~~~-~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~  430 (514)
T 2r9r_B          352 IGVILFSSAVY-FAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY  430 (514)
T ss_dssp             HHHHHHHHHHH-HHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHhhhh-eeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555544 4454       378999999999999999999999999999999999999999999988888765443

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=98.69  E-value=2.6e-09  Score=103.38  Aligned_cols=93  Identities=17%  Similarity=0.213  Sum_probs=68.0

Q ss_pred             ChHHHHH-HHHHHHHHHHHHHhhhhhcc---cccCC----------CCCCCccceeeeeeeeeeeeeccccccc--CccC
Q 040114          104 STPLIVQ-QAFIGLVLYILAGIVIYLTN---GNFKG----------KATFKPVDALYFIVVTLCTIGYGDIVPD--TTFT  167 (378)
Q Consensus       104 ~~~~~~~-~~~~~l~~~l~~g~~~~~~~---~~~~~----------~~~~~~~~a~yf~~vtltTvGyGdi~P~--t~~g  167 (378)
                      +|+.++. .++..++.++++|.++|+..   +....          ....++.+++||+++|+|||||||++|.  ++.|
T Consensus        41 ~Wr~~llif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g  120 (340)
T 3sya_A           41 KWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEG  120 (340)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSBSCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhccccCHHHHHhhhheeeeeecCCCccCcCcCHHH
Confidence            4555443 33444556777777766432   22110          1234789999999999999999999997  7899


Q ss_pred             ceeeehhhhhhhhhhhhhhcchhhhhhhh
Q 040114          168 KLFTCVFILIGFGFVDILLNGLVTYICDR  196 (378)
Q Consensus       168 ~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~  196 (378)
                      ++++.+.+++|+.++++.++.+...+.+.
T Consensus       121 ~~l~~~~~l~G~~l~a~~~giv~ak~srp  149 (340)
T 3sya_A          121 IILLLIQSVLGSIVNAFMVGCMFVKISQP  149 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999888776655543

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=98.53  E-value=1.1e-08  Score=99.02  Aligned_cols=54  Identities=22%  Similarity=0.299  Sum_probs=48.1

Q ss_pred             cccccceeEEEEEEeccccCCcccC--CcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          243 MNWVDSFYLSVTSVTTVGYGDYAFT--TLTGRCFAIIWLLVSTLAVARAFLYLTEL  296 (378)
Q Consensus       243 ~~~~da~Y~~~~T~tTVGyGD~~p~--t~~gr~f~~~~il~g~~~va~~~~~l~~~  296 (378)
                      .++.+++||+++|+|||||||++|.  ++.|++++.+-+++|+.++|..++.+...
T Consensus        90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak  145 (340)
T 3sya_A           90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVK  145 (340)
T ss_dssp             CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3789999999999999999999997  57899999999999999999888766543

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=98.50  E-value=5.8e-09  Score=101.10  Aligned_cols=92  Identities=20%  Similarity=0.336  Sum_probs=66.5

Q ss_pred             ChHHHHHHH-HHHHHHHHHHHhhhhhc---ccccC---CC--------CCCCccceeeeeeeeeeeeeccccccc--Ccc
Q 040114          104 STPLIVQQA-FIGLVLYILAGIVIYLT---NGNFK---GK--------ATFKPVDALYFIVVTLCTIGYGDIVPD--TTF  166 (378)
Q Consensus       104 ~~~~~~~~~-~~~l~~~l~~g~~~~~~---~~~~~---~~--------~~~~~~~a~yf~~vtltTvGyGdi~P~--t~~  166 (378)
                      +|+.++.+. ...++.++++|.+.|+.   ++...   ..        ...++.+++||+++|+|||||||++|.  ++.
T Consensus        43 ~Wr~~ll~f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~  122 (343)
T 3spc_A           43 RWRYMLLLFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPL  122 (343)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSEETCCSHHHHHHHHHHHHSCCCCSSSEECSSCHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccCCHHHHhheeeeeeEeecCCCccCCCCCHH
Confidence            455544433 44555677777766642   22111   11        234789999999999999999999974  899


Q ss_pred             Cceeeehhhhhhhhhhhhhhcchhhhhhh
Q 040114          167 TKLFTCVFILIGFGFVDILLNGLVTYICD  195 (378)
Q Consensus       167 g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~  195 (378)
                      |++++.+-+++|+.++++.++.+...+.+
T Consensus       123 ~~~l~~~~~l~G~~l~a~~~giv~ak~sr  151 (343)
T 3spc_A          123 AVFMVVVQSIVGCIIDSFMIGAIMAKMAR  151 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999988776655543

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=98.42  E-value=3.2e-08  Score=95.92  Aligned_cols=53  Identities=19%  Similarity=0.264  Sum_probs=47.1

Q ss_pred             cccccceeEEEEEEeccccCCcccC--CcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          243 MNWVDSFYLSVTSVTTVGYGDYAFT--TLTGRCFAIIWLLVSTLAVARAFLYLTE  295 (378)
Q Consensus       243 ~~~~da~Y~~~~T~tTVGyGD~~p~--t~~gr~f~~~~il~g~~~va~~~~~l~~  295 (378)
                      .++.+++||+++|+|||||||++|.  ++.|++++.+-+++|+.++|..++.+..
T Consensus        93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~a  147 (343)
T 3spc_A           93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMA  147 (343)
T ss_dssp             CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3789999999999999999999974  7899999999999999999988876553

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=97.94  E-value=3.1e-07  Score=86.73  Aligned_cols=90  Identities=10%  Similarity=0.120  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecc-ccc-ccCccC----ceeeehhhhhhhhh
Q 040114          108 IVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYG-DIV-PDTTFT----KLFTCVFILIGFGF  181 (378)
Q Consensus       108 ~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyG-di~-P~t~~g----~~~~~~~~l~Gi~~  181 (378)
                      +....+++++++++++++.+...++..+...-++.+|+||+++++||+||| |+. |.+..|    +.++++.++.|+.+
T Consensus       148 l~~~~~~~~~~~~~fa~~g~~~f~~~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~  227 (285)
T 3rvy_A          148 MLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVM  227 (285)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHH
Confidence            344444444555555554442222222223457999999999999999999 996 888766    66777778889999


Q ss_pred             hhhhhcchhhhhhhhH
Q 040114          182 VDILLNGLVTYICDRQ  197 (378)
Q Consensus       182 ~~~~~~~~~~~l~~~~  197 (378)
                      +.+.++.+.+.+.+..
T Consensus       228 lnl~~aii~~~f~~~~  243 (285)
T 3rvy_A          228 INLVVAICVDAMAILN  243 (285)
T ss_dssp             HHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999998888776543

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=97.91  E-value=3.4e-07  Score=86.42  Aligned_cols=57  Identities=11%  Similarity=0.025  Sum_probs=47.0

Q ss_pred             ccccceeEEEEEEeccccC-Ccc-cCCcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          244 NWVDSFYLSVTSVTTVGYG-DYA-FTTLTG----RCFAIIWLLVSTLAVARAFLYLTELRIEK  300 (378)
Q Consensus       244 ~~~da~Y~~~~T~tTVGyG-D~~-p~t~~g----r~f~~~~il~g~~~va~~~~~l~~~~~~~  300 (378)
                      ++.+|+||.++|+||+||| |+. |.+..|    +.|+++.++.|+++++..++.+.+...+.
T Consensus       180 s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~  242 (285)
T 3rvy_A          180 TLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAIL  242 (285)
T ss_dssp             SHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999 996 877654    77888888889999999999888775543

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=93.72  E-value=0.025  Score=44.32  Aligned_cols=51  Identities=24%  Similarity=0.382  Sum_probs=39.1

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .|..+| +++++++.++   |++.|.|++|.|+.+|.+
T Consensus        44 ~~D~d~~G~I~~~El~~-~l~~lg~~~~~~ei~~l---~~~~D~d~dG~I~~~EF~   95 (100)
T 2lv7_A           44 VFDRDGNGFISKQELGT-AMRSLGYMPNEVELEVI---IQRLDMDGDGQVDFEEFV   95 (100)
T ss_dssp             HTCSSCSSCBCHHHHHH-HHHHHTCCCCTTTHHHH---HHHHCSSCSSSBCHHHHH
T ss_pred             HHcCCCCCcCCHHHHHH-HHHHhCCCCCHHHHHHH---HHHHCCCCCCeEeHHHHH
Confidence            45889999999998764 455665 5688888766   556789999999988754

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=92.90  E-value=0.013  Score=52.81  Aligned_cols=89  Identities=11%  Similarity=0.107  Sum_probs=52.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeeccccccc----CccCceeeehhhhh-h
Q 040114          104 STPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPD----TTFTKLFTCVFILI-G  178 (378)
Q Consensus       104 ~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~----t~~g~~~~~~~~l~-G  178 (378)
                      +.+.+.....++++++.++|.+.+...++..+...-++.+|+|+.+.++|+.||+|+...    ++.+.++.+.|.++ +
T Consensus       129 s~~~l~~~~~~l~~~~~ifa~~g~~lf~~~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~  208 (229)
T 4dxw_A          129 SVRRVFFVSLLLFIILYIYATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICS  208 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            345555555566666666666655333333333455799999999999999999997332    33444433333333 3


Q ss_pred             hhhhhhhhcchhhh
Q 040114          179 FGFVDILLNGLVTY  192 (378)
Q Consensus       179 i~~~~~~~~~~~~~  192 (378)
                      ..++.+.++.+.+.
T Consensus       209 ~i~lNlfiavi~~~  222 (229)
T 4dxw_A          209 ITILNLVIAILVDV  222 (229)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            44445555544433

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A

Probab=92.86  E-value=0.049  Score=47.17  Aligned_cols=54  Identities=28%  Similarity=0.479  Sum_probs=43.2

Q ss_pred             eeecCCCCCcccchHHHHHHHH---hCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKE---MGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~---~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+... +..   ...+++++..++..-|++.|.|++|.|+.+|..
T Consensus       130 ~~D~d~~G~Is~~El~~~-l~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~Is~~EF~  186 (191)
T 3k21_A          130 VFDVDNDGEITTAELAHI-LYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFS  186 (191)
T ss_dssp             HHSTTCSSCBCHHHHHHH-HHHSSSCSCCCHHHHHHHHHHHHHHCSSSSSSBCHHHHH
T ss_pred             HhCCCCCCcCCHHHHHHH-HHhcCCCCCCCHhHHHHHHHHHHHhcCCCCCeECHHHHH
Confidence            457889999999998754 333   235788888888889999999999999998864

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}

Probab=92.78  E-value=0.027  Score=39.46  Aligned_cols=51  Identities=22%  Similarity=0.319  Sum_probs=36.1

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+... +...| ..++++   +..-|+..|.|++|.|+.+|+.
T Consensus         8 ~~D~d~~G~i~~~e~~~~-l~~~~~~~~~~~---~~~~~~~~D~~~~g~i~~~ef~   59 (66)
T 3li6_A            8 EIDVNGDGAVSYEEVKAF-VSKKRAIKNEQL---LQLIFKSIDADGNGEIDQNEFA   59 (66)
T ss_dssp             HHCTTCSSSCCHHHHHHH-HHHHHHHHHHHH---HHHHHHHHCTTCSSSCCHHHHH
T ss_pred             HHCCCCCCcccHHHHHHH-HHHccCCCcHHH---HHHHHHHHCCCCCCCCCHHHHH
Confidence            357789999999997643 33443 223344   4556788899999999988864

>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10

Probab=92.69  E-value=0.052  Score=39.43  Aligned_cols=50  Identities=26%  Similarity=0.440  Sum_probs=38.3

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..|+.. .+...|..+++++..+   |+.+|.|++|.|+.+|..
T Consensus        12 ~D~~~~G~i~~~el~~-~l~~~g~~~~~~~~~~---~~~~D~~~dg~i~~~ef~   61 (78)
T 1k9u_A           12 FDTNGDGKISLSELTD-ALRTLGSTSADEVQRM---MAEIDTDGDGFIDFNEFI   61 (78)
T ss_dssp             HCTTCSSEECHHHHHH-HHHHHHTCCHHHHHHH---HHHHCTTCSSSEEHHHHH
T ss_pred             HCCCCCCcCcHHHHHH-HHHHhCCCCHHHHHHH---HHHhCCCCCCeEcHHHHH
Confidence            4778899999988764 4555567788887655   667789999999988764

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}

Probab=92.33  E-value=0.035  Score=45.49  Aligned_cols=49  Identities=10%  Similarity=0.068  Sum_probs=21.1

Q ss_pred             eecCCCCCcccchHHHHHHHHhC--CCCHHHHHHHHhhhcccCCCCCcccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMG--KIAEKDILQICNQFDLIDDSKCGKITVADL  374 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g--~is~edi~~i~~~f~~ld~~~~G~l~~~d~  374 (378)
                      .|.+++|.++..|+.. .+...|  .++++++..+.   ++.|.|++|.|+.+|.
T Consensus        49 ~D~d~~G~I~~~el~~-~l~~~g~~~~~~~e~~~~~---~~~D~d~dG~I~~~EF   99 (135)
T 3h4s_E           49 LADPERHLITAESLRR-NSGILGIEGMSKEDAQGMV---REGDLDGDGALNQTEF   99 (135)
T ss_dssp             HSBTTTTBBCHHHHHH-HGGGGTCCCCCHHHHHHHH---HHHCSSCSSSBCHHHH
T ss_pred             HCCCCCCcCCHHHHHH-HHHHhCCCCCCHHHHHHHH---HHhCCCCCCCCcHHHH
Confidence            3444455555444332 233334  34444443332   2334455555554443

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*

Probab=92.27  E-value=0.081  Score=43.17  Aligned_cols=55  Identities=22%  Similarity=0.310  Sum_probs=41.9

Q ss_pred             eeecCCCCCcccchHHHHHHH-HhCCCCHHHHHHHHhh-hcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLK-EMGKIAEKDILQICNQ-FDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~-~~g~is~edi~~i~~~-f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+....-. .-..++++++..+.++ |++.|.|++|.|+.+|..
T Consensus        83 ~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~  139 (155)
T 3ll8_B           83 IYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFC  139 (155)
T ss_dssp             HHCTTCSSCBCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHCTTSSSSBCHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            347889999999998654333 2356788888777665 667899999999988764

>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5

Probab=92.25  E-value=0.093  Score=36.50  Aligned_cols=50  Identities=24%  Similarity=0.389  Sum_probs=37.1

Q ss_pred             eecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..|+.. .+...| ..+++++..   -|+..|.|++|.|+.+|..
T Consensus        10 ~D~d~~G~i~~~el~~-~l~~~~~~~~~~~~~~---~~~~~D~~~dg~i~~~ef~   60 (67)
T 1tiz_A           10 FDKNKDGKLSLDEFRE-VALAFSPYFTQEDIVK---FFEEIDVDGNGELNADEFT   60 (67)
T ss_dssp             HCTTSSSCEEHHHHHH-HHHHTCTTSCHHHHHH---HHHHHCCSSSSEECHHHHH
T ss_pred             HCCCCCCcCcHHHHHH-HHHHhCCCCCHHHHHH---HHHHHCCCCCCcCcHHHHH
Confidence            4778899999988764 455555 456776654   4667789999999988764

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=92.24  E-value=0.12  Score=39.14  Aligned_cols=50  Identities=24%  Similarity=0.444  Sum_probs=38.7

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .|...| .+++++..+   |+++|.|++|.|+.+|..
T Consensus        35 ~~D~d~~G~I~~~El~~-~l~~~g-~~~~~~~~~---~~~~D~d~dg~I~~~EF~   84 (91)
T 2pmy_A           35 ACDANRSGRLEREEFRA-LCTELR-VRPADAEAV---FQRLDADRDGAITFQEFA   84 (91)
T ss_dssp             HHCTTCSSSEEHHHHHH-HHHHTT-CCHHHHHHH---HHHHCTTCSSEECHHHHT
T ss_pred             HHCCCCCCCCcHHHHHH-HHHHcC-cCHHHHHHH---HHHhCCCCCCCEeHHHHH
Confidence            35778899999988765 466677 787776554   666789999999998865

>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}

Probab=91.98  E-value=0.12  Score=39.44  Aligned_cols=50  Identities=20%  Similarity=0.415  Sum_probs=38.2

Q ss_pred             eecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..|+.. .+...| ..+++++.++   |+++|.|++|.|+.+|..
T Consensus        38 ~D~d~~G~I~~~El~~-~l~~~g~~~~~~e~~~l---~~~~D~d~dG~I~~~EF~   88 (94)
T 2kz2_A           38 EDKDGNGYISAAELRH-VMTNLGEKLTDEEVDEM---IREADIDGDGQVNYEEFV   88 (94)
T ss_dssp             HCTTCCSCBCHHHHHH-HHHHHTCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             HCCCCcCcCCHHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            4778999999998765 455566 5678887665   556788999999988764

>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A

Probab=91.88  E-value=0.077  Score=38.91  Aligned_cols=54  Identities=15%  Similarity=0.335  Sum_probs=39.2

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC---CCCHHHHHH-HHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG---KIAEKDILQ-ICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g---~is~edi~~-i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...|   ..+++++.. +..-|++.|.|++|.|+.+|..
T Consensus        15 ~~D~d~~G~i~~~el~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~   72 (83)
T 1yx7_A           15 KLDANGDGYVTALELQT-FMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFL   72 (83)
T ss_dssp             HHSSSCSSSCSHHHHHH-HHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHH
T ss_pred             HHCCCCCCcCcHHHHHH-HHHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHH
Confidence            34778999999988765 445556   567776655 2224778899999999988764

>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C

Probab=91.72  E-value=0.059  Score=44.75  Aligned_cols=58  Identities=9%  Similarity=0.026  Sum_probs=21.5

Q ss_pred             CCeeeeecCCCCCcccchHHHHHHHHhC----CCCHHHHHHHHhhhcccCCCCCcccccccccc
Q 040114          317 GDLVAADLDNDGSISKSEFVIYKLKEMG----KIAEKDILQICNQFDLIDDSKCGKITVADLMY  376 (378)
Q Consensus       317 ~~l~~~d~d~d~~v~~~e~~~~~L~~~g----~is~edi~~i~~~f~~ld~~~~G~l~~~d~~~  376 (378)
                      ..+..+|.+++|.++..||....-....    ..+.+  .++...|+.+|.|++|.|+.+|+..
T Consensus        31 ~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~~~~--~~l~~~F~~~D~d~dG~I~~~El~~   92 (143)
T 3a4u_B           31 SQPGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQ--ELQLHYFKMHDYDGNNLLDGLELST   92 (143)
T ss_dssp             --------------------------------CCCHH--HHHHHHHHHTCTTCSSCEEHHHHHH
T ss_pred             HHHHHhCCCCCCcCcHHHHHHHHHHHhcccccccCHH--HHHHHHHHHhCCCCCCccCHHHHHH
Confidence            3456778899999999998754322211    22222  3445669999999999999998853

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=91.67  E-value=0.048  Score=42.70  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=29.5

Q ss_pred             hCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          343 MGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       343 ~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..+++++++.++.+.|+.+|.|++|.|+.+||.
T Consensus        27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~   59 (100)
T 2lv7_A           27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELG   59 (100)
T ss_dssp             CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence            456788999999999999999999999999875

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...

Probab=91.65  E-value=0.052  Score=44.67  Aligned_cols=52  Identities=19%  Similarity=0.141  Sum_probs=27.5

Q ss_pred             ecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          323 DLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       323 d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      |.+++|.++..||+......... .......+...|+.+|.|++|.|+.+|+.
T Consensus        56 D~~~~g~i~~~eF~~~~~~~~~~-~~~~~~~l~~~F~~~D~d~~G~I~~~el~  107 (156)
T 1wdc_C           56 HKMGEKSLPFEEFLPAYEGLMDC-EQGTFADYMEAFKTFDREGQGFISGAELR  107 (156)
T ss_dssp             SSTTSCEECHHHHHHHHHHHTTS-CCCCHHHHHHHHHTTCSSSSSEEEHHHHH
T ss_pred             CCCCCCeeeHHHHHHHHHHHhhc-cCChHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            55566667777766543333321 11112233455666677777777666653

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A

Probab=91.63  E-value=0.1  Score=38.54  Aligned_cols=51  Identities=27%  Similarity=0.427  Sum_probs=39.0

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .|...|..+++++..+   |+.+|.|++|.|+.+|..
T Consensus        19 ~~D~d~~G~i~~~el~~-~l~~~g~~~~~~~~~~---~~~~D~~~dg~i~~~eF~   69 (86)
T 2opo_A           19 RFDTNGDGKISSSELGD-ALKTLGSVTPDEVRRM---MAEIDTDGDGFISFDEFT   69 (86)
T ss_dssp             HHCTTCSSEEEHHHHHH-HHHTTTTCCHHHHHHH---HHHHCTTCSSEECHHHHH
T ss_pred             HHCCCCCCCcCHHHHHH-HHHHcCCCCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            34778899999888764 4566677788877655   566789999999988764

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}

Probab=91.53  E-value=0.12  Score=44.13  Aligned_cols=55  Identities=20%  Similarity=0.118  Sum_probs=36.6

Q ss_pred             eeecCCCCCcccchHHHHHHHH------hCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKE------MGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~------~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||+......      ...........+...|+..|.|++|.|+.+|+.
T Consensus        72 ~~D~d~dG~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~  132 (191)
T 2ccm_A           72 YADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYS  132 (191)
T ss_dssp             HHCTTCSSCEEHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCTTCSSBCCHHHHH
T ss_pred             hcCCCCCCeECHHHHHHHHHHHhccccchhhchHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            3577888999999987543322      122233334456777888888888888887764

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A

Probab=91.31  E-value=0.095  Score=45.72  Aligned_cols=54  Identities=26%  Similarity=0.465  Sum_probs=42.1

Q ss_pred             eeecCCCCCcccchHHHHHHHHh-C-CCCHHHHHHHHhh-hcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEM-G-KIAEKDILQICNQ-FDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~-g-~is~edi~~i~~~-f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+... +..+ | .++++++..+.++ |++.|.|++|.|+.+|..
T Consensus       121 ~~D~d~dG~Is~~El~~~-l~~~~g~~~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~  177 (208)
T 2ct9_A          121 LYDLDKDDKISRDELLQV-LRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFV  177 (208)
T ss_dssp             HHCTTCSSEECHHHHHHH-HHHHSCTTCCHHHHHHHHHHHHHHHCSSSSSSEEHHHHH
T ss_pred             HHCCCCCCEEcHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            357889999999998653 4443 5 5788888777554 889999999999998865

>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C

Probab=91.30  E-value=0.062  Score=45.42  Aligned_cols=53  Identities=13%  Similarity=0.082  Sum_probs=29.6

Q ss_pred             ecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          323 DLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       323 d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +-+++|.++-.||+...-....+-......++.+.|+.+|.|++|.|+.+||.
T Consensus        56 d~~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~  108 (159)
T 3i5g_C           56 KKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIR  108 (159)
T ss_dssp             SSTTSCEECHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHCTTSSSEECHHHHH
T ss_pred             cccCCCcccHHHHHHHHHHhhcccccchHHHHHHHHHHHhcCCCCcCcHHHHH
Confidence            44556677777776543333332222222234566777777777777777763

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6

Probab=91.16  E-value=0.087  Score=40.21  Aligned_cols=30  Identities=23%  Similarity=0.211  Sum_probs=25.2

Q ss_pred             CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          346 IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       346 is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +++++..++.+.|+.+|.|++|.|+.+|+.
T Consensus         3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~   32 (92)
T 1fi6_A            3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAK   32 (92)
T ss_dssp             CCHHHHHHHHHHHTTTCCSTTCEEEHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence            467888888888999999999999888764

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A

Probab=91.07  E-value=0.073  Score=41.28  Aligned_cols=45  Identities=20%  Similarity=0.316  Sum_probs=34.1

Q ss_pred             CCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          326 NDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       326 ~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ++|.++..||+...  .   .+++...++...|+.+|.|++|.|+.+|+.
T Consensus        21 ~~g~i~~~ef~~~~--~---~~~~~~~~l~~~F~~~D~d~~G~I~~~el~   65 (110)
T 1pva_A           21 AEGSFNHKKFFALV--G---LKAMSANDVKKVFKAIDADASGFIEEEELK   65 (110)
T ss_dssp             STTCCCHHHHHHHH--T---CTTSCHHHHHHHHHHHCTTCSSSBCHHHHH
T ss_pred             CCCcCcHHHHHHHH--c---cCcchHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            67889999987642  1   233445567788999999999999998875

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C

Probab=90.97  E-value=0.038  Score=45.13  Aligned_cols=51  Identities=18%  Similarity=0.333  Sum_probs=32.3

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..|+.. .+...| +++++++..+   |+..| |++|.|+.+|..
T Consensus        94 ~~~D~d~~G~I~~~el~~-~l~~~g~~~~~~~~~~~---~~~~d-~~dg~i~~~eF~  145 (151)
T 1w7j_B           94 RVFDKEGNGKVMGAELRH-VLTTLGEKMTEEEVETV---LAGHE-DSNGCINYEAFL  145 (151)
T ss_dssp             HTTCTTSSSEEEHHHHHH-HHHHSSSCCCHHHHHHH---HTTCC-CTTSEEEHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHH-HHHHcCCCCCHHHHHHH---HHhcc-CCCCeEeHHHHH
Confidence            345667777777777664 345555 3566666555   44556 777887776653

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A

Probab=90.91  E-value=0.062  Score=41.65  Aligned_cols=46  Identities=20%  Similarity=0.297  Sum_probs=33.9

Q ss_pred             CCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          325 DNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       325 d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      |++|.++..||+...  ..   +++...++...|+.+|.|++|.|+.+|+.
T Consensus        19 d~~g~i~~~eF~~~~--~~---~~~~~~~l~~~F~~~D~d~~G~I~~~el~   64 (109)
T 1rwy_A           19 TAADSFDHKKFFQMV--GL---KKKSADDVKKVFHILDKDKSGFIEEDELG   64 (109)
T ss_dssp             CSTTCCCHHHHHHHH--TG---GGSCHHHHHHHHHHHSTTCSSEECHHHHH
T ss_pred             CCCCcEeHHHHHHHH--hc---CcchHHHHHHHHHHHCCCCCCeEcHHHHH
Confidence            378889999987643  11   23344566788999999999999998875

>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5

Probab=90.85  E-value=0.043  Score=44.28  Aligned_cols=49  Identities=22%  Similarity=0.348  Sum_probs=24.2

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCcccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADL  374 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~  374 (378)
                      ..|.+++|.++..|+.. .+...| .++++++..+.+   ++|. ++|.|+.+|.
T Consensus        84 ~~D~d~~G~i~~~el~~-~l~~~g~~~~~~~~~~~~~---~~d~-~dg~i~~~eF  133 (140)
T 1ggw_A           84 VFDKDATGMIGVGELRY-VLTSLGEKLSNEEMDELLK---GVPV-KDGMVNYHDF  133 (140)
T ss_dssp             TTCSSCSSCCCHHHHHH-HHHHHHSCSCHHHHHHHHH---HTTC-SSCCSTTTHH
T ss_pred             HhCCCCCCcEeHHHHHH-HHHHcCCCCCHHHHHHHHH---hccC-CCCcEeHHHH
Confidence            34555566666655553 233333 345555544433   3344 5566665554

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=90.82  E-value=0.025  Score=60.04  Aligned_cols=55  Identities=15%  Similarity=0.290  Sum_probs=43.9

Q ss_pred             CccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhhh
Q 040114          140 KPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICD  195 (378)
Q Consensus       140 ~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~  195 (378)
                      ++.+++||++.+++..| ++..|.+..+|++..+|+++++.+.+...+.+.+++..
T Consensus       563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~  617 (823)
T 3kg2_A          563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV  617 (823)
T ss_dssp             HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            36689999999999988 78899999999999999999999999988888887754

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}

Probab=90.75  E-value=0.1  Score=45.08  Aligned_cols=54  Identities=28%  Similarity=0.522  Sum_probs=42.1

Q ss_pred             eeecCCCCCcccchHHHHHHHHh-C-CCCHHHHHHHHhh-hcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEM-G-KIAEKDILQICNQ-FDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~-g-~is~edi~~i~~~-f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+... | .++++++..+.++ |+++|.|++|.|+.+|..
T Consensus       122 ~~D~d~dG~Is~~El~~-~l~~~~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~  178 (202)
T 2bec_A          122 LYDLDRDGKISRHEMLQ-VLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFT  178 (202)
T ss_dssp             HHCTTCSSEECHHHHHH-HHHHSCCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHH
T ss_pred             HhCCCCCCeEcHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHH
Confidence            35788999999998875 44555 5 4788888777664 677999999999998865

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}

Probab=90.73  E-value=0.13  Score=44.29  Aligned_cols=51  Identities=25%  Similarity=0.307  Sum_probs=37.8

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+...   .....+.....+...|+.+|.|++|.|+.+|+.
T Consensus        82 ~D~d~dg~i~~~ef~~~~---~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~  132 (204)
T 3e3r_A           82 WDRNGSGTLDLEEFLRAL---RPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLR  132 (204)
T ss_dssp             HCTTCSSSBCHHHHHHHT---SCCCCHHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             hccCCCCcCcHHHHHHHH---HhhcCchHHHHHHHHHHHhCcCCCCeEeHHHHH
Confidence            366788888888887642   233345555677888999999999999988875

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=90.71  E-value=0.18  Score=40.72  Aligned_cols=54  Identities=15%  Similarity=0.269  Sum_probs=39.0

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHH--HHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEK--DILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~e--di~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+............+  ....+...|+.+|.|++|.|+.+|+.
T Consensus        56 ~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~  111 (153)
T 3ox6_A           56 INMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELR  111 (153)
T ss_dssp             HHTTSTTCCCHHHHHHHHHHHHTTCCHHHHCHHHHHHHHHHHCTTCSSSBCHHHHH
T ss_pred             hCCCCCccCcHHHHHHHHHHHhhccccccccHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            4667889999999987654443333322  24566778999999999999998874

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=90.69  E-value=0.12  Score=43.40  Aligned_cols=52  Identities=17%  Similarity=0.295  Sum_probs=40.3

Q ss_pred             ecCCCCCcccchHHHHHHHHhC-----CCCHHHHHHHHhh--------hcccCCCCCccccccccc
Q 040114          323 DLDNDGSISKSEFVIYKLKEMG-----KIAEKDILQICNQ--------FDLIDDSKCGKITVADLM  375 (378)
Q Consensus       323 d~d~d~~v~~~e~~~~~L~~~g-----~is~edi~~i~~~--------f~~ld~~~~G~l~~~d~~  375 (378)
                      |.+++|.++..|+... +...+     ..+++++..+...        |+..|.|++|.|+.+|+.
T Consensus        19 D~d~dG~i~~~E~~~~-l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~   83 (185)
T 2sas_A           19 DMNHDGSIQDNDFEDM-MTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYL   83 (185)
T ss_dssp             CTTCSSEECHHHHHHH-HHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHH
T ss_pred             eCCCCCeEcHHHHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEcHHHHH
Confidence            7889999999998643 33333     6788888776544        999999999999998864

>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A

Probab=90.60  E-value=0.07  Score=41.30  Aligned_cols=47  Identities=26%  Similarity=0.408  Sum_probs=34.2

Q ss_pred             CCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCcccccccccc
Q 040114          325 DNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLMY  376 (378)
Q Consensus       325 d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~~  376 (378)
                      |++|.++..||+...  ..   +++...++...|+.+|.|++|.|+.+|+..
T Consensus        19 d~~g~i~~~eF~~~~--~~---~~~~~~~l~~~F~~~D~d~~G~I~~~el~~   65 (108)
T 2kyc_A           19 QAPDSFSPKKFFQIS--GM---SKKSSSQLKEIFRILDNDQSGFIEEDELKY   65 (108)
T ss_dssp             CSTTTCCHHHHHHHH--TC---TTCCSSSHHHHCSSSCSCCSSCCCGGGTTT
T ss_pred             CCCCcCCHHHHHHHH--hh---CcccHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence            378889999987643  11   223334567789999999999999999864

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A

Probab=90.50  E-value=0.075  Score=41.15  Aligned_cols=46  Identities=15%  Similarity=0.320  Sum_probs=34.2

Q ss_pred             CCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          325 DNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       325 d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      |++|.++..||+...  ..   +++...++...|+.+|.|++|.|+.+|+.
T Consensus        19 d~~g~i~~~eF~~~~--~~---~~~~~~~l~~~F~~~D~d~~G~I~~~el~   64 (108)
T 1rro_A           19 QDPDTFEPQKFFQTS--GL---SKMSASQVKDIFRFIDNDQSGYLDGDELK   64 (108)
T ss_dssp             CSTTCCCHHHHHHHH--SG---GGSCHHHHHHHHHHHCTTCSSEECTHHHH
T ss_pred             cCCCCcCHHHHHHHH--hc---CcccHHHHHHHHHHhCCCCCCcCCHHHHH
Confidence            378899999998643  11   23344556788999999999999998875

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5

Probab=90.38  E-value=0.17  Score=42.04  Aligned_cols=55  Identities=13%  Similarity=0.238  Sum_probs=42.0

Q ss_pred             eeecCCCCCcccchHHHH---HHHHhC-CCCHHHHHHHH--------hhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIY---KLKEMG-KIAEKDILQIC--------NQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~---~L~~~g-~is~edi~~i~--------~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+...   .+...| ..+++++..+.        .-|+..|.|++|.|+.+|+.
T Consensus        15 ~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~d~dg~i~~~Ef~   81 (176)
T 1nya_A           15 RWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFI   81 (176)
T ss_dssp             HCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCTTCCBCHHHHH
T ss_pred             HHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence            457889999999998753   355566 44677776554        67889999999999998864

>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A

Probab=90.38  E-value=0.25  Score=36.38  Aligned_cols=52  Identities=12%  Similarity=0.082  Sum_probs=38.1

Q ss_pred             eecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..|+.. .|...| ..++++...+..-|++.|.|++|.|+. +..
T Consensus        23 ~D~d~~G~I~~~el~~-~l~~~g~~~~~~~~~~~~~~~~~~d~~~~g~i~~-eF~   75 (86)
T 1j7q_A           23 FDRNAENIAPVSDTMD-MLTKLGQTYTKRETEAIMKEARGPKGDKKNIGPE-EWL   75 (86)
T ss_dssp             HSTTTTSCBCHHHHHH-HHHHTSCCCSHHHHHHHHHHHHCSSCSSCCBCTT-HHH
T ss_pred             hCCCCCCcCcHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHhCCCCCCcCCH-HHH
Confidence            4778899999988764 556666 457777333455577889999999998 764

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=90.38  E-value=0.14  Score=42.41  Aligned_cols=51  Identities=22%  Similarity=0.386  Sum_probs=39.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...| .++++++..+   |+.+|.|++|.|+.+|..
T Consensus       109 ~~D~d~~G~i~~~el~~-~l~~~g~~~~~~~~~~~---~~~~D~~~dg~i~~~eF~  160 (169)
T 3qrx_A          109 LFDDDNSGTITIKDLRR-VAKELGENLTEEELQEM---IAEADRNDDNEIDEDEFI  160 (169)
T ss_dssp             HHCTTCSSSBCHHHHHH-HHHHTTCCCCHHHHHHH---HHHHCCSSSSCBCHHHHH
T ss_pred             HhCCCCCCcCCHHHHHH-HHHHcCCCCCHHHHHHH---HHHhCCCCCCCEeHHHHH
Confidence            45778999999999875 445555 5688887665   666789999999998865

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=90.30  E-value=0.11  Score=43.68  Aligned_cols=55  Identities=20%  Similarity=0.215  Sum_probs=37.7

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCC------CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGK------IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~------is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||+...-...+.      ..+.....+...|+.+|.|++|.|+.+|+.
T Consensus        68 ~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~  128 (185)
T 2sas_A           68 RADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQ  128 (185)
T ss_dssp             HHCTTCSSCEEHHHHHHHHHHHHHTCCSGGGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHH
T ss_pred             hcCCCCCCeEcHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHcCCCCCeEcHHHHH
Confidence            4577889999999987654333221      111223456777889999999999988874

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5

Probab=90.17  E-value=0.18  Score=41.92  Aligned_cols=55  Identities=16%  Similarity=0.225  Sum_probs=39.9

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCH---H--HHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAE---K--DILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~---e--di~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||+...-........   +  ....+...|+.+|.|++|.|+.+|+.
T Consensus        66 ~~D~d~dg~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~  125 (176)
T 1nya_A           66 EAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFA  125 (176)
T ss_dssp             HHTSCTTCCBCHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHH
T ss_pred             HhCCCCCCeEcHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHH
Confidence            3467889999999998765444444443   1  12456778999999999999998874

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A

Probab=90.01  E-value=0.25  Score=40.52  Aligned_cols=50  Identities=24%  Similarity=0.384  Sum_probs=39.5

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...| .+++++..+   |+.+|.|++|.|+.+|+.
T Consensus       106 ~~D~d~~G~i~~~E~~~-~l~~~~-~~~~~~~~~---~~~~D~d~dg~i~~~ef~  155 (166)
T 3akb_A          106 VADTDGDGAVTVADTAR-ALTAFG-VPEDLARQA---AAALDTDGDGKVGETEIV  155 (166)
T ss_dssp             HHCSSSSSCCBHHHHHH-HHHHTT-CCHHHHHHH---HHHHCTTCSSBCCHHHHH
T ss_pred             HhCCCCCCcCCHHHHHH-HHHHhC-CCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            35788999999999865 456678 888888665   556688999999988864

>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=90.01  E-value=0.027  Score=41.87  Aligned_cols=53  Identities=30%  Similarity=0.468  Sum_probs=39.9

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCcccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLMY  376 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~~  376 (378)
                      ...|.+++|.++..|+.. .+...| ..+++++..+   |+++|.|++|.|+.+|...
T Consensus        30 ~~~D~d~~G~i~~~el~~-~l~~~~~~~~~~~~~~l---~~~~d~~~~g~i~~~eF~~   83 (87)
T 1s6j_A           30 KMIDTDNSGTITFDELKD-GLKRVGSELMESEIKDL---MDAADIDKSGTIDYGEFIA   83 (87)
T ss_dssp             HHHCTTCSSCEEHHHHHH-HHHTTTSSCCHHHHHHH---HHHHCTTCSSEECHHHHTT
T ss_pred             HHHCCCCCCcCcHHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHHH
Confidence            346788999999988765 455666 4678877665   5567899999999988754

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=89.96  E-value=0.16  Score=40.90  Aligned_cols=50  Identities=18%  Similarity=0.383  Sum_probs=28.0

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...| .++++++..+   |++ |.|++|.|+.+|..
T Consensus        93 ~~D~d~~G~i~~~el~~-~l~~~g~~~~~~~~~~~---~~~-d~~~dg~i~~~eF~  143 (149)
T 2mys_C           93 VFDKEGNGTVMGAELRH-VLATLGEKMTEEEVEEL---MKG-QEDSNGCINYEAFV  143 (149)
T ss_pred             HhCCCCCceEcHHHHHH-HHHHhCCCCCHHHHHHH---Hhh-CCCCCCcEeHHHHH
Confidence            45556666666666554 334444 3455555444   444 66667776666543

>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C

Probab=89.94  E-value=0.078  Score=43.99  Aligned_cols=55  Identities=16%  Similarity=0.242  Sum_probs=40.1

Q ss_pred             eeecCCCCCcccchHHHHHHHHh---------CCCCHHHHHHHH-hhhcccCCCCCcccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEM---------GKIAEKDILQIC-NQFDLIDDSKCGKITVADLMY  376 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~---------g~is~edi~~i~-~~f~~ld~~~~G~l~~~d~~~  376 (378)
                      ..|.+++|.++..|+... +...         ..++++++.++. .-|++.|.|++|.|+.+|...
T Consensus        76 ~~D~d~dG~I~~~El~~~-l~~~~~~~~~~~g~~~s~~e~~~~~~~~f~~~D~d~dG~Is~~EF~~  140 (143)
T 3a4u_B           76 MHDYDGNNLLDGLELSTA-ITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFAK  140 (143)
T ss_dssp             HTCTTCSSCEEHHHHHHT-CC-------------CCHHHHHHHHHHHHHHHCTTCSSEECHHHHHC
T ss_pred             HhCCCCCCccCHHHHHHH-HHHHHhhhccccCCCCCHHHHHHHHHHHHHHcCCCCCCcEeHHHHHH
Confidence            458899999999987643 2233         367888887765 456999999999999988753

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}

Probab=89.92  E-value=0.16  Score=44.07  Aligned_cols=55  Identities=16%  Similarity=0.227  Sum_probs=37.1

Q ss_pred             eeecCCCCCcccchHHHHHH------H--HhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKL------K--EMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L------~--~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||+....      .  ....-.+..-..+...|+.+|.|++|.|+.+|+.
T Consensus        89 ~~D~d~dg~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~  151 (208)
T 2hpk_A           89 HKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELK  151 (208)
T ss_dssp             HTTCBTTTBEEGGGHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCTTCSSSBCHHHHH
T ss_pred             HhCCCCCCeEcHHHHHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHhCCCCCCcCCHHHHH
Confidence            34678899999999987543      1  2222111111225778999999999999998874

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}

Probab=89.82  E-value=0.14  Score=43.52  Aligned_cols=50  Identities=24%  Similarity=0.294  Sum_probs=39.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...| ++++++..   -|+++|.|++|.|+.+|+.
T Consensus       117 ~~D~d~dG~I~~~E~~~-~l~~~g-~~~~~~~~---~~~~~D~d~dG~i~~~Ef~  166 (191)
T 2ccm_A          117 VNDTSGDNIIDKHEYST-VYMSYG-IPKSDCDA---AFDTLSDGGKTMVTREIFA  166 (191)
T ss_dssp             HHCTTCSSBCCHHHHHH-HHHTTT-CCHHHHHH---HHHHHTTTTTSCCBHHHHH
T ss_pred             HhCCCCCCcCcHHHHHH-HHHHhC-CCHHHHHH---HHHHhCCCCCCCcCHHHHH
Confidence            45889999999999875 345667 78877754   4677789999999998865

>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=89.79  E-value=0.24  Score=37.94  Aligned_cols=50  Identities=26%  Similarity=0.429  Sum_probs=37.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.++||.++..|... .+...| .+++++.++   |++.|.|++|.|+.+|..
T Consensus        18 ~~D~d~dG~I~~~el~~-~l~~~g-~~~~~~~~i---~~~~D~d~dG~i~~~EF~   67 (95)
T 1c07_A           18 KTDKDMDGFVSGLEVRE-IFLKTG-LPSTLLAHI---WSLCDTKDCGKLSKDQFA   67 (95)
T ss_dssp             HHCTTCSSEECHHHHHH-HHHTTT-CCHHHHHHH---HHHHCTTCSSSEETTTHH
T ss_pred             HhCCCCCCcEeHHHHHH-HHHHcC-CCHHHHHHH---HHHHCCCCCCcCCHHHHH
Confidence            34778999999988653 345555 777777665   556799999999998864

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...

Probab=89.77  E-value=0.18  Score=41.38  Aligned_cols=54  Identities=22%  Similarity=0.420  Sum_probs=30.6

Q ss_pred             eecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+......... ........+...|+.+|.|++|.|+.+|+.
T Consensus        64 ~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~El~  118 (161)
T 1dtl_A           64 VDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELK  118 (161)
T ss_dssp             HCTTSSSSBCHHHHHHHHHHHHC-----CHHHHHHHHHHHHCTTCSSEEEHHHHG
T ss_pred             hCCCCCCeEcHHHHHHHHHHHhcccccchHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            355667777777776544333220 011223345666777777777777777664

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=89.74  E-value=0.17  Score=41.66  Aligned_cols=51  Identities=25%  Similarity=0.391  Sum_probs=38.4

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .|..+| +.+++++..+   |++.|.|++|.|+.+|.+
T Consensus        91 ~~D~d~~G~I~~~El~~-~l~~~g~~~~~~e~~~l---~~~~D~d~dG~I~~~EF~  142 (148)
T 2lmt_A           91 IFDRDGDGFISPAELRF-VMINLGEKVTDEEIDEM---IREADFDGDGMINYEEFV  142 (148)
T ss_dssp             HHHSSCSSEECHHHHHH-HHHHHTCCCCHHHHHHH---HHHHCCSCCSSEEHHHHH
T ss_pred             HHCCCCcCcCcHHHHHH-HHHHcCccccHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            45789999999999764 455554 5678887666   456689999999988754

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=89.71  E-value=0.21  Score=40.09  Aligned_cols=51  Identities=16%  Similarity=0.306  Sum_probs=38.7

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+..+| .++++++..+   |+++|.|++|.|+.+|..
T Consensus        84 ~~D~d~~G~I~~~El~~-~l~~~g~~~~~~~~~~~---~~~~D~d~dg~i~~~eF~  135 (143)
T 3j04_B           84 CFDEEASGFIHEDHLRE-LLTTMGDRFTDEEVDEM---YREAPIDKKGNFNYVEFT  135 (143)
T ss_dssp             TSCSSSCCCCCTTTHHH-HHHTSSSCCCHHHHHHH---HHHTTCCSSSCCCSTHHH
T ss_pred             HHCCCCCCeEcHHHHHH-HHHHcCCCCCHHHHHHH---HHHcCCCCCCcCcHHHHH
Confidence            45788999999999875 344555 4678887666   556689999999998865

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=89.60  E-value=0.11  Score=42.45  Aligned_cols=53  Identities=21%  Similarity=0.389  Sum_probs=36.0

Q ss_pred             eeeeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          319 LVAADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       319 l~~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +...|.+++|.++..|+.. .+...| .++++++.++   |++.|.|++|.|+.+|..
T Consensus        85 F~~~D~d~~G~I~~~el~~-~l~~~g~~~~~~~~~~~---~~~~D~d~dG~I~~~eF~  138 (143)
T 2obh_A           85 FKLFDDDETGKISFKNLKR-VAKELGENLTDEELQEM---IDEADRDGDGEVSEQEFL  138 (143)
T ss_dssp             HHHHCTTCSSSBCHHHHHH-HHHHTTCCCCHHHHHHH---HHHHCTTSSSSBCHHHHH
T ss_pred             HHHhCCCCCCcCcHHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            3456778888888777654 445565 4677777665   445678888888877654

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}

Probab=89.60  E-value=0.19  Score=36.04  Aligned_cols=50  Identities=24%  Similarity=0.442  Sum_probs=36.8

Q ss_pred             eecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..|+.. .+...|. .+++++..   -|+.+|.|++|.|+.+|..
T Consensus        16 ~D~d~~G~i~~~el~~-~l~~~g~~~~~~~~~~---~~~~~d~~~~g~i~~~eF~   66 (77)
T 2joj_A           16 FDTNKTGSIDYHELKV-AMRALGFDVKKPEILE---LMNEYDREGNGYIGFDDFL   66 (77)
T ss_dssp             HCCSSSSEEEHHHHHH-HHHHHTCCCHHHHHHH---HHHHHCCSSSSEEEHHHHH
T ss_pred             hCCCCCCCCcHHHHHH-HHHHhCCCCCHHHHHH---HHHHHCCCCCCcCcHHHHH
Confidence            4778899999988765 4555664 45666654   4667789999999988764

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A

Probab=89.53  E-value=0.17  Score=41.62  Aligned_cols=55  Identities=22%  Similarity=0.291  Sum_probs=42.0

Q ss_pred             eeecCCCCCcccchHHHHH---HHHhC-CCCHHHHHHHH--------hhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYK---LKEMG-KIAEKDILQIC--------NQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~---L~~~g-~is~edi~~i~--------~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+....   +...| ..+++++..+.        .-|+..|.|++|.|+.+|+.
T Consensus        12 ~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~~g~i~~~ef~   78 (166)
T 3akb_A           12 TFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRITREEFV   78 (166)
T ss_dssp             HHCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSSSCEEHHHHH
T ss_pred             HHcCCCCCCcCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            3578899999999986542   34445 55777777665        66899999999999998865

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=89.53  E-value=0.13  Score=51.28  Aligned_cols=53  Identities=26%  Similarity=0.459  Sum_probs=39.1

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCcccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLMY  376 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~~  376 (378)
                      ..|.|+||.++..||+..........++++   +...|+.+|.|++|.|+.+|+..
T Consensus       389 ~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~---~~~~F~~~D~d~dG~Is~~El~~  441 (486)
T 3mwu_A          389 LLDMDGSGSIEYSEFIASAIDRTILLSRER---MERAFKMFDKDGSGKISTKELFK  441 (486)
T ss_dssp             HHCTTCCSSBCHHHHHHHHSCTTTTCCHHH---HHHHHHHHCSSCSSSBCSSCC--
T ss_pred             HhcCCCCCcCcHHHHHHHHHhhhccchHHH---HHHHHHHhCCCCCCcCCHHHHHH
Confidence            467889999999999875443444444544   46678888999999999999863

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A

Probab=89.47  E-value=0.1  Score=40.39  Aligned_cols=46  Identities=26%  Similarity=0.354  Sum_probs=32.8

Q ss_pred             CCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          325 DNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       325 d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      |++|.++..||+...  ..   +++...++...|+.+|.|++|.|+.+|+.
T Consensus        19 d~~g~i~~~eF~~~~--~~---~~~~~~~l~~~F~~~D~d~~G~I~~~el~   64 (108)
T 2pvb_A           19 SAADSFKHKEFFAKV--GL---ASKSLDDVKKAFYVIDQDKSGFIEEDELK   64 (108)
T ss_dssp             CSTTCCCHHHHHHHH--TG---GGSCHHHHHHHHHHHCTTCSSSBCHHHHH
T ss_pred             CCCCcCcHHHHHHHH--hC---ChhHHHHHHHHHHHHCCCCCCcCCHHHHH
Confidence            367889999987642  11   12334456778888899999999988875

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=89.47  E-value=0.1  Score=42.97  Aligned_cols=51  Identities=27%  Similarity=0.427  Sum_probs=37.6

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCC-HHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIA-EKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is-~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+........... +++   +...|+.+|.|++|.|+.+||.
T Consensus        55 ~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~---l~~aF~~~D~d~~G~I~~~El~  106 (148)
T 2lmt_A           55 AENNNNGQLNFTEFCGIMAKQMRETDTEEE---MREAFKIFDRDGDGFISPAELR  106 (148)
T ss_dssp             HHTTSTTEEEHHHHHHHHHHTTTTTTTHHH---HHHHHHHHHSSCSSEECHHHHH
T ss_pred             cccCCCCcccHHHHHHHHHHHhcccCcHHH---HHHHHHHHCCCCcCcCcHHHHH
Confidence            46678888999998865544444433 443   4567999999999999999874

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=89.45  E-value=0.15  Score=40.88  Aligned_cols=51  Identities=16%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..|+.. .+...| .++++++..+.   +++| |++|.|+.+|..
T Consensus        86 ~~~D~d~~G~i~~~el~~-~l~~~g~~~~~~~~~~~~---~~~d-~~dg~i~~~eF~  137 (142)
T 2bl0_C           86 RTFDPEGTGYIPKAALQD-ALLNLGDRLKPHEFAEFL---GITE-TEKGQIRYDNFI  137 (142)
T ss_dssp             HHTCCSSCSCEEHHHHHH-HHHHSSSCCCHHHHHHHH---HHHC-CSSSEECSHHHH
T ss_pred             HHHCCCCCCcCcHHHHHH-HHHHcCCCCCHHHHHHHH---HHhC-CCCCcEeHHHHH
Confidence            345666777777766654 344455 45666665543   3445 677777776654

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=89.39  E-value=0.16  Score=41.47  Aligned_cols=51  Identities=22%  Similarity=0.350  Sum_probs=29.4

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCcccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADL  374 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~  374 (378)
                      ...|.+++|.++..|+.. .|...| +++++++..+.   +++|.|++|.|+.+|.
T Consensus        90 ~~~D~d~~G~I~~~el~~-~l~~~g~~~~~~~~~~~~---~~~d~d~dg~i~~~eF  141 (148)
T 1exr_A           90 KVFDRDGNGLISAAELRH-VMTNLGEKLTDDEVDEMI---READIDGDGHINYEEF  141 (148)
T ss_dssp             HHHSTTCSSCBCHHHHHH-HHHHTTCCCCHHHHHHHH---HHHCSSSSSSBCHHHH
T ss_pred             HHhCCCCCCcCCHHHHHH-HHHHhCCCCCHHHHHHHH---HHhCCCCCCcEeHHHH
Confidence            445666667776666553 334444 35666665553   3446677777776654

>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}

Probab=89.39  E-value=0.12  Score=36.51  Aligned_cols=51  Identities=20%  Similarity=0.382  Sum_probs=37.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...| ..+++++..+   |+.+|.|++|.|+.+|..
T Consensus        14 ~~D~d~~G~i~~~el~~-~l~~~~~~~~~~~~~~~---~~~~d~~~~g~i~~~eF~   65 (71)
T 2b1u_A           14 AFDQDGDGHITVDELRR-AMAGLGQPLPQEELDAM---IREADVDQDGRVNYEEFA   65 (71)
T ss_dssp             TSCCSSSSEEEHHHHHH-HGGGTTCSSCHHHHHHH---HHHCCSSSSSEEETTHHH
T ss_pred             HHCCCCCCcCcHHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            35778899999988764 444555 4577776554   567789999999998864

>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=89.26  E-value=0.1  Score=40.09  Aligned_cols=30  Identities=10%  Similarity=0.079  Sum_probs=27.0

Q ss_pred             CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          346 IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       346 is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +++++..++.+.|+.+|.|++|.|+.+|+.
T Consensus         4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~   33 (95)
T 1c07_A            4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVR   33 (95)
T ss_dssp             SCSHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCcEeHHHHH
Confidence            467888999999999999999999998875

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*

Probab=89.24  E-value=0.15  Score=41.40  Aligned_cols=53  Identities=23%  Similarity=0.207  Sum_probs=38.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||+............  ...+...|+.+|.|++|.|+.+|+.
T Consensus        46 ~~D~~~~g~i~~~ef~~~~~~~~~~~~~--~~~~~~~F~~~D~d~~G~i~~~e~~   98 (155)
T 3ll8_B           46 IFDTDGNGEVDFKEFIEGVSQFSVKGDK--EQKLRFAFRIYDMDKDGYISNGELF   98 (155)
T ss_dssp             HHCTTCSSSBCHHHHHHHHGGGCSSCCH--HHHHHHHHHHHCTTCSSCBCHHHHH
T ss_pred             HHCCCCCCcCcHHHHHHHHHHHcccCCH--HHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            3567889999999998754332222222  2455677999999999999999874

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}

Probab=89.10  E-value=0.12  Score=44.80  Aligned_cols=55  Identities=16%  Similarity=0.124  Sum_probs=40.0

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC--------------CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG--------------KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g--------------~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||+........              +........+...|+.+|.|++|.|+.+|+.
T Consensus        69 ~~D~d~dg~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~  137 (202)
T 2bec_A           69 SFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEML  137 (202)
T ss_dssp             TTSCSSCCCCCHHHHHHHHGGGSCCCHHHHC-----CCCCTTSHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHHHHHhcccchhcccccccccccccccHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence            357788999999999875432221              0033445567889999999999999999875

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A

Probab=89.09  E-value=0.14  Score=44.52  Aligned_cols=53  Identities=15%  Similarity=0.073  Sum_probs=38.1

Q ss_pred             ecCCCCCcccchHHHHHHHHhCCCCH-------------HHHHHHHhhhcccCCCCCccccccccc
Q 040114          323 DLDNDGSISKSEFVIYKLKEMGKIAE-------------KDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       323 d~d~d~~v~~~e~~~~~L~~~g~is~-------------edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      |.+++|.++..||+............             .....+...|+.+|.|++|.|+.+|+.
T Consensus        71 d~~~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~  136 (208)
T 2ct9_A           71 FSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELL  136 (208)
T ss_dssp             SCTTCSCEEHHHHHHHHHTTSCCC-----------CCTTSHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             cCCCCCcCcHHHHHHHHHhhccccchhhhcccccccccccHHHHHHHHHHHHCCCCCCEEcHHHHH
Confidence            66788999999998653322211111             145667888999999999999999874

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=89.02  E-value=0.22  Score=40.53  Aligned_cols=52  Identities=25%  Similarity=0.464  Sum_probs=38.4

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +|.+++|.++..||+.........  ......+...|+.+|.|++|.|+.+||.
T Consensus        51 ~d~~~~g~i~~~eF~~~~~~~~~~--~~~~~~l~~~F~~~D~d~~G~I~~~el~  102 (143)
T 2obh_A           51 IDKEGTGKMNFGDFLTVMTQKMSE--KDTKEEILKAFKLFDDDETGKISFKNLK  102 (143)
T ss_dssp             HTTTCCSEEEHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCTTCSSSBCHHHHH
T ss_pred             hCCCCCCeeeHHHHHHHHHHHhcc--ccHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            467788999999998654333221  2334566788999999999999999874

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4

Probab=88.98  E-value=0.1  Score=40.38  Aligned_cols=45  Identities=24%  Similarity=0.271  Sum_probs=31.7

Q ss_pred             CCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          326 NDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       326 ~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ++|.++..||+...  ..   +++...++...|+.+|.|++|.|+.+|+.
T Consensus        21 ~~g~i~~~eF~~~~--~~---~~~~~~~l~~~F~~~D~d~~G~I~~~el~   65 (109)
T 1bu3_A           21 AADSFNYKAFFAKV--GL---TAKSADDIKKAFFVIDQDKSGFIEEDELK   65 (109)
T ss_dssp             STTCCCHHHHHHHH--TG---GGSCHHHHHHHHHHHCTTCSSSEEHHHHH
T ss_pred             CCCcCcHHHHHHHH--Hc---ChhhHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence            67888888887642  11   12334556777888889999998888874

>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=88.88  E-value=0.29  Score=35.97  Aligned_cols=46  Identities=24%  Similarity=0.456  Sum_probs=36.1

Q ss_pred             CCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          325 DNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       325 d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +++|.++..|.++     ....+++++.++.+.|+.+|.|++|.|+.+|+.
T Consensus         1 ~~~G~i~~~e~~~-----~~~l~~~~~~~~~~~F~~~D~d~~G~i~~~el~   46 (87)
T 1s6j_A            1 HSSGHIDDDDKHM-----AERLSEEEIGGLKELFKMIDTDNSGTITFDELK   46 (87)
T ss_dssp             CCSSSSSSHHHHS-----SSSSCSSSTTTTTTHHHHHCTTCSSCEEHHHHH
T ss_pred             CCCCccCccHHHH-----HHHCCHHHHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence            3577888888332     345677777788999999999999999998875

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A

Probab=88.86  E-value=0.086  Score=40.84  Aligned_cols=47  Identities=23%  Similarity=0.290  Sum_probs=33.3

Q ss_pred             CCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCcccccccccc
Q 040114          325 DNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLMY  376 (378)
Q Consensus       325 d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~~  376 (378)
                      |++|.++..||+...  ..   ..+...++...|+.+|.|++|.|+.+|+..
T Consensus        20 D~~g~i~~~eF~~~~--~~---~~~~~~~l~~~F~~~D~d~~G~i~~~el~~   66 (109)
T 3fs7_A           20 QAADSFNYKSFFSTV--GL---SSKTPDQIKKVFGILDQDKSGFIEEEELQL   66 (109)
T ss_dssp             CSTTCCCHHHHHHHH--TC---TTCCHHHHHHHHHHHSTTCSSSBCHHHHHT
T ss_pred             CCCCcCcHHHHHHHH--hc---CCCcHHHHHHHHHHHCCCCCCeEeHHHHHH
Confidence            378899999988652  11   122334556778888999999999988753

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6

Probab=88.85  E-value=0.26  Score=37.47  Aligned_cols=50  Identities=20%  Similarity=0.237  Sum_probs=37.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.++||.++..|... .+...| .+++++.++   |++.|.|++|.|+.+|..
T Consensus        17 ~~D~d~dG~I~~~el~~-~l~~~g-~~~~~~~~i---~~~~D~d~dG~i~~~EF~   66 (92)
T 1fi6_A           17 TIQPDLNGFIPGSAAKE-FFTKSK-LPILELSHI---WELSDFDKDGALTLDEFC   66 (92)
T ss_dssp             TTCCSTTCEEEHHHHHH-HHHHHS-SCHHHHHHH---HHHHCTTCSSEEEHHHHH
T ss_pred             HHCCCCCCcCcHHHHHH-HHHHcC-CCHHHHHHH---HHHHCCCCCCCCCHHHHH
Confidence            35778899999888654 345566 778777665   456799999999988754

>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}

Probab=88.78  E-value=0.17  Score=43.52  Aligned_cols=52  Identities=25%  Similarity=0.238  Sum_probs=37.7

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||+... ...+.-..+  .++..-|+.+|.|++|.|+.+|+.
T Consensus        60 ~~D~d~~G~I~~~Ef~~~~-~~~~~~~~~--~~~~~~F~~~D~d~~G~I~~~Ef~  111 (198)
T 2r2i_A           60 TFDFNKDGYIDFMEYVAAL-SLVLKGKVD--QKLRWYFKLYDVDGNGCIDRGELL  111 (198)
T ss_dssp             HHCTTCSSCEEHHHHHHHH-HHHSSCCHH--HHHHHHHHHHCTTCSSCEEHHHHH
T ss_pred             HHCCCCCCeEcHHHHHHHH-HHHccCchH--HHHHHHHHHhcCCCCCcCcHHHHH
Confidence            3577899999999998643 344433322  234566889999999999998875

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=88.75  E-value=0.18  Score=41.82  Aligned_cols=52  Identities=35%  Similarity=0.546  Sum_probs=37.8

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+.........  ......+...|+.+|.|++|.|+.+|+.
T Consensus        73 ~d~~~~g~i~~~eF~~~~~~~~~~--~~~~~~~~~~F~~~D~d~~G~i~~~el~  124 (169)
T 3qrx_A           73 IDKDGSGTIDFEEFLTMMTAKMGE--RDSREEILKAFRLFDDDNSGTITIKDLR  124 (169)
T ss_dssp             HCSSSSSSEEHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCTTCSSSBCHHHHH
T ss_pred             hcCCCCCcCCHHHHHHHHHHHhcc--cCcHHHHHHHHHHhCCCCCCcCCHHHHH
Confidence            467788999999987654333221  2234456778999999999999998874

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A

Probab=88.60  E-value=0.14  Score=37.87  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=27.0

Q ss_pred             CCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          344 GKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       344 g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...++++..++.+.|+.+|.|++|.|+.+|+.
T Consensus         3 ~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~   34 (86)
T 2opo_A            3 AEDTPQDIADRERIFKRFDTNGDGKISSSELG   34 (86)
T ss_dssp             ---CHHHHHHHHHHHHHHCTTCSSEEEHHHHH
T ss_pred             ccCCHhhHHHHHHHHHHHCCCCCCCcCHHHHH
Confidence            45688899999999999999999999999875

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=88.59  E-value=0.36  Score=38.83  Aligned_cols=52  Identities=25%  Similarity=0.390  Sum_probs=38.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+....-...| .++++++..+   |++.|.|++|.|+.+|..
T Consensus        96 ~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~---~~~~d~~~dg~i~~~eF~  148 (153)
T 3ox6_A           96 EFDTNGDGEISTSELREAMRALLGHQVGHRDIEEI---IRDVDLNGDGRVDFEEFV  148 (153)
T ss_dssp             HHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHH---HHHHCSSSSSSBCHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            347789999999998764333144 5688887666   455689999999988864

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A

Probab=88.43  E-value=0.17  Score=40.97  Aligned_cols=50  Identities=20%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             ecCCCCCcccchHHHHHHHH------hCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          323 DLDNDGSISKSEFVIYKLKE------MGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       323 d~d~d~~v~~~e~~~~~L~~------~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      |.+++|.++..||+......      ......+   .+...|+.+|.|++|.|+.+|+.
T Consensus        51 D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~---~~~~~F~~~D~d~~G~I~~~el~  106 (148)
T 1m45_A           51 SLRDASSLTLDQITGLIEVNEKELDATTKAKTE---DFVKAFQVFDKESTGKVSVGDLR  106 (148)
T ss_dssp             CC--CCEEEHHHHHHHHHHTHHHHHGGGCCCTH---HHHHHHHTTCSSSSSEEEHHHHH
T ss_pred             CCCCCCeEcHHHHHHHHHHHHhhccccccccHH---HHHHHHHHhCCCCCCcCCHHHHH
Confidence            67788888888887643322      2222333   34566888888888888888764

>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E

Probab=88.41  E-value=0.16  Score=42.83  Aligned_cols=52  Identities=25%  Similarity=0.296  Sum_probs=37.9

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||+...-......+++   .+..-|+..|.|++|.|+.+|+.
T Consensus        64 ~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~---~~~~~f~~~D~d~~G~i~~~e~~  115 (183)
T 1s6c_A           64 AFDTTQTGSVKFEDFVTALSILLRGTVHE---KLRWTFNLYDINKDGYINKEEMM  115 (183)
T ss_dssp             HHCTTCSSCEEHHHHHHHHHHHHHCCHHH---HHHHHHHHHCTTCSSCEEHHHHH
T ss_pred             HhCCCCCCcEeHHHHHHHHHHHcCCCHHH---HHHHHHHHhCCCCCCeEcHHHHH
Confidence            35778899999999986543333333333   44667889999999999998875

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}

Probab=88.37  E-value=0.25  Score=40.20  Aligned_cols=55  Identities=18%  Similarity=0.289  Sum_probs=27.8

Q ss_pred             eeeeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          319 LVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       319 l~~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +..+|.+++|.++..||+...-....  ..+...++...|+.+|.|++|.|+.+|+.
T Consensus         9 ~~~~D~d~~G~I~~~EF~~~~~~~~~--~~~~~~~l~~~F~~~D~d~~G~I~~~el~   63 (135)
T 3h4s_E            9 LLETTSTTKMETKYEDMLPVMAEKMD--VEEFVSELCKGFSLLADPERHLITAESLR   63 (135)
T ss_dssp             ----------CCCC-----------C--HHHHHHHHHHHHHHHSBTTTTBBCHHHHH
T ss_pred             HHHHcCCCCCcEeHHHHHHHHHHHcc--ccchHHHHHHHHHHHCCCCCCcCCHHHHH
Confidence            34568889999999999865433332  34555677888999999999999998875

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=88.37  E-value=0.13  Score=54.53  Aligned_cols=54  Identities=17%  Similarity=0.335  Sum_probs=42.3

Q ss_pred             cccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          245 WVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIE  299 (378)
Q Consensus       245 ~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~~  299 (378)
                      +.+++|+++.+++..| ++..|.+..+|++.++|+++++++.+...+.++...+.
T Consensus       564 ~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~  617 (823)
T 3kg2_A          564 IFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV  617 (823)
T ss_dssp             HHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5678999999998888 78899999999999999999999998888888877654

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}

Probab=88.35  E-value=0.15  Score=36.59  Aligned_cols=30  Identities=33%  Similarity=0.541  Sum_probs=26.8

Q ss_pred             CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          346 IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       346 is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +++++..++.+.|+.+|.|++|.|+.+|+.
T Consensus         1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~   30 (77)
T 2joj_A            1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELK   30 (77)
T ss_dssp             CCHHHHHHHHHHHHHHCCSSSSEEEHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCCcHHHHH
Confidence            367888899999999999999999998875

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*

Probab=88.32  E-value=0.29  Score=41.34  Aligned_cols=52  Identities=13%  Similarity=0.114  Sum_probs=38.6

Q ss_pred             eecCCCCC-cccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGS-ISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~-v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|. ++..||+............+  ..+...|+.+|.|++|.|+.+|+.
T Consensus        69 ~D~d~~G~~I~~~EF~~~~~~~~~~~~~~--~~l~~~F~~~D~d~~G~I~~~El~  121 (183)
T 1dgu_A           69 FSTSPAKDSLSFEDFLDLLSVFSDTATPD--IKSHYAFRIFDFDDDGTLNREDLS  121 (183)
T ss_dssp             HSCSSSSCCCCHHHHHHHHHHHSTTCCHH--HHHHHHHHHHCTTCSSEEEHHHHH
T ss_pred             hCCCCCCCEecHHHHHHHHHHhcCCCCHH--HHHHHHHHHhCCCCCCcCCHHHHH
Confidence            36788999 99999987654443332322  345678999999999999999875

>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5

Probab=88.27  E-value=0.21  Score=43.21  Aligned_cols=51  Identities=22%  Similarity=0.268  Sum_probs=37.6

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+...-......+++++   ...|+..|.|++|.|+.+|+.
T Consensus        68 ~D~d~~G~i~~~Ef~~~~~~~~~~~~~~~~---~~~F~~~D~d~~G~I~~~E~~  118 (204)
T 1jba_A           68 FDTNGDNTIDFLEYVAALNLVLRGTLEHKL---KWTFKIYDKDRNGCIDRQELL  118 (204)
T ss_dssp             HCCSSSSEECHHHHHHHHHHHSSCCCTHHH---HHHHHHHCSSCSSCBCHHHHH
T ss_pred             HcCCCCCeEeHHHHHHHHHHHccCCHHHHH---HHHHHHhCCCCCCcCcHHHHH
Confidence            477889999999988654333333445544   566888899999999998875

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=88.26  E-value=0.24  Score=39.72  Aligned_cols=50  Identities=22%  Similarity=0.440  Sum_probs=37.7

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+... +...| .++++++..+.+++   | |++|.|+.+|..
T Consensus        92 ~~D~d~~G~i~~~e~~~~-l~~~~~~~~~~~~~~~~~~~---d-~~dg~i~~~eF~  142 (147)
T 4ds7_A           92 VFDKNGDGLISAAELKHV-LTSIGEKLTDAEVDEMLREV---S-DGSGEINIKQFA  142 (147)
T ss_dssp             HHCTTCSSEECHHHHHHH-HHHTTCCCCHHHHHHHHHHH---S-SSCSSEEHHHHH
T ss_pred             HhCCCCCCeECHHHHHHH-HHHcCCCCCHHHHHHHHHHh---c-CCCCcCcHHHHH
Confidence            447789999999998764 44554 56888887766555   7 999999988764

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=88.25  E-value=0.29  Score=41.82  Aligned_cols=49  Identities=22%  Similarity=0.440  Sum_probs=37.7

Q ss_pred             eecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..|+.. .|...| +++++++.++.+++   | |++|.|+.+|..
T Consensus        93 fD~d~~G~I~~~el~~-~l~~~g~~~~~~ei~~l~~~~---d-d~dG~I~~~EF~  142 (176)
T 2lhi_A           93 FDKNGDGLISAAELKH-VLTSIGEKLTDAEVDDMLREV---S-DGSGEINIQQFA  142 (176)
T ss_dssp             HCSSCSSSBCHHHHHH-HHHTTTCCCCHHHHHHHHHHH---H-TTSSCBCTTHHH
T ss_pred             hCCCCCCcCcHHHHHH-HHHHcCcccchHHHHHHHHhh---c-CCCCeEeHHHHH
Confidence            4788999999998764 445554 56899998887665   6 899999988754

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A

Probab=88.25  E-value=0.22  Score=41.73  Aligned_cols=52  Identities=19%  Similarity=0.372  Sum_probs=27.1

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..|+.. .+...| .++++++..+   |+.+|.|++|.|+.+|..
T Consensus        91 ~~~D~d~~G~I~~~E~~~-~l~~~g~~~~~~~~~~~---~~~~D~~~dg~i~~~eF~  143 (179)
T 2f2o_A           91 RVFDKDGNGYISAAELRH-VMTNLGEKLTDEEVDEM---IREADIDGDGQVNYEEFV  143 (179)
T ss_dssp             HHHCTTCSSEECHHHHHH-HHHHC--CCCHHHHHHH---HHHHCTTCSSSEEHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHH-HHHHhCCCCCHHHHHHH---HHHcCCCCCCcCcHHHHH
Confidence            345556666666666543 233333 3455555444   334456666666666543

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=88.09  E-value=0.28  Score=40.11  Aligned_cols=52  Identities=21%  Similarity=0.344  Sum_probs=31.6

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..|+.. .+...| .++++++..+   |+..|.|++|.|+.+|..
T Consensus       103 ~~~D~d~~G~i~~~el~~-~l~~~~~~~~~~~~~~~---~~~~d~~~~g~i~~~eF~  155 (161)
T 3fwb_A          103 QLFDDDHTGKISIKNLRR-VAKELGETLTDEELRAM---IEEFDLDGDGEINENEFI  155 (161)
T ss_dssp             HHHCTTCSSEECHHHHHH-HHHHTTCCCCHHHHHHH---HHTTCSSSSSSEEHHHHH
T ss_pred             HHHcCCCCCeEeHHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            446667777777777654 334444 3466666554   455567777777776653

>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7

Probab=88.02  E-value=0.46  Score=36.37  Aligned_cols=51  Identities=14%  Similarity=0.249  Sum_probs=38.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .|...| ..+++++..+   |+++|.|++|.|+.+|..
T Consensus        32 ~~D~d~~G~i~~~el~~-~l~~~g~~~~~~e~~~l---~~~~d~~~~g~i~~~eF~   83 (105)
T 1wlz_A           32 NFDTMKTNTISREEFRA-ICNRRVQILTDEQFDRL---WNEMPVNAKGRLKYPDFL   83 (105)
T ss_dssp             HHCTTCSSCBCHHHHHH-HHHHHTCCCCHHHHHHH---HTTSCBCTTSCBCHHHHH
T ss_pred             HHCCCCCCcCcHHHHHH-HHHHhCCCCCHHHHHHH---HHHcCCCCCCCCcHHHHH
Confidence            35778999999999765 445555 5678877665   566789999999988764

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A

Probab=87.98  E-value=0.33  Score=36.12  Aligned_cols=51  Identities=22%  Similarity=0.444  Sum_probs=38.0

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .|...| ..+++++..+   |+++|.|++|.|+.+|..
T Consensus        28 ~~D~d~~G~i~~~el~~-~l~~~g~~~~~~~~~~l---~~~~D~~~dg~i~~~eF~   79 (90)
T 1avs_A           28 MFDADGGGDISTKELGT-VMRMLGQNPTKEELDAI---IEEVDEDGSGTIDFEEFL   79 (90)
T ss_dssp             HHCTTCSSEECHHHHHH-HHHHTTCCCCHHHHHHH---HHHHCTTCCSSEEHHHHH
T ss_pred             HHCCCCCCcCcHHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            34778899999988764 455565 4577777665   566789999999988764

>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6

Probab=87.95  E-value=0.36  Score=37.41  Aligned_cols=50  Identities=20%  Similarity=0.337  Sum_probs=37.4

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|... .+...| ++++++.++   |++.|.|++|.|+.+|..
T Consensus        19 ~~D~d~dG~Is~~el~~-~l~~~~-l~~~~l~~i---~~~~D~d~dG~i~~~EF~   68 (99)
T 1qjt_A           19 QVEAGNTGRVLALDAAA-FLKKSG-LPDLILGKI---WDLADTDGKGVLSKQEFF   68 (99)
T ss_dssp             HHCCTTSSCCCSHHHHH-HHHTSS-SCHHHHHHH---HHHHCCSSSSSCCSHHHH
T ss_pred             HHCCCCCCcCCHHHHHH-HHHHcC-CCHHHHHHH---HHHHCCCCCCcCCHHHHH
Confidence            45778999999988654 344455 788877665   556789999999988754

>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A

Probab=87.91  E-value=0.23  Score=42.12  Aligned_cols=52  Identities=27%  Similarity=0.345  Sum_probs=38.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||....-......+++++   ..-|+..|.|++|.|+.+|+.
T Consensus        71 ~~D~d~~G~i~~~ef~~~~~~~~~~~~~~~~---~~~f~~~D~d~~G~i~~~ef~  122 (190)
T 1fpw_A           71 VFDKDNNGFIHFEEFITVLSTTSRGTLEEKL---SWAFELYDLNHDGYITFDEML  122 (190)
T ss_dssp             TCCSSCSSEECHHHHHHHHHHHSCCCSTHHH---HHHHHHHCSSCSSEEEHHHHH
T ss_pred             HHCCCCCCcEeHHHHHHHHHHHccCCcHHHH---HHHHHHhcCCCCCcCcHHHHH
Confidence            4678899999999998643333334455555   456888899999999998875

>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*

Probab=87.88  E-value=0.26  Score=41.88  Aligned_cols=51  Identities=24%  Similarity=0.306  Sum_probs=35.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...| +++++++.++   |+++|.|++|.|+.+|..
T Consensus       121 ~~D~d~~G~I~~~El~~-~l~~~g~~~~~~~~~~~---~~~~D~d~dg~i~~~eF~  172 (195)
T 1qv0_A          121 IFDKDGSGTITLDEWKA-YGKISGISPSQEDCEAT---FRHCDLDNAGDLDVDEMT  172 (195)
T ss_dssp             HTC----CEECHHHHHH-HHHHHSSCCCHHHHHHH---HHHSCCCTTSCEEHHHHH
T ss_pred             HhcCCCCCcCcHHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCcCCHHHHH
Confidence            45788999999999875 345555 4578877655   667789999999988764

>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}

Probab=87.86  E-value=0.11  Score=44.23  Aligned_cols=48  Identities=17%  Similarity=0.340  Sum_probs=20.9

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCcccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADL  374 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~  374 (378)
                      .|.+++|.++..|+... +. ...++++++..+   |+++|.|++|.|+.+|.
T Consensus       132 ~D~d~~G~I~~~E~~~~-l~-~~~~~~~~~~~~---~~~~D~~~dg~i~~~eF  179 (191)
T 3khe_A          132 FDSDGSGKITNEELGRL-FG-VTEVDDETWHQV---LQECDKNNDGEVDFEEF  179 (191)
T ss_dssp             HCTTCSSEECHHHHHHH-TT-SSCCCHHHHHHH---HHHHCTTCSSSEEHHHH
T ss_pred             HCCCCcCcCCHHHHHHH-Hc-cCCCCHHHHHHH---HHHhCCCCCCCCCHHHH
Confidence            44445555555544332 11 223344444333   33345555555555543

>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}

Probab=87.81  E-value=0.18  Score=44.08  Aligned_cols=51  Identities=25%  Similarity=0.302  Sum_probs=37.4

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+...-......+++   ++...|+.+|.|++|.|+.+|+.
T Consensus        66 ~D~d~dG~I~~~Ef~~~~~~~~~~~~~~---~l~~~F~~~D~d~~G~I~~~E~~  116 (211)
T 2ggz_A           66 FDTNKDGFVDFLEFIAAVNLIMQEKMEQ---KLKWYFKLYDADGNGSIDKNELL  116 (211)
T ss_dssp             HCTTCSSEEEHHHHHHHHHHHSCSSHHH---HHHHHHHHHCTTCSSSBCHHHHH
T ss_pred             HcCCCCCeEeHHHHHHHHHHhccCchHH---HHHHHHHHhcCCCCCcCcHHHHH
Confidence            4778899999999986543322222333   45667999999999999999875

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=87.79  E-value=0.25  Score=39.61  Aligned_cols=52  Identities=23%  Similarity=0.376  Sum_probs=37.8

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+.........  ......+...|+.+|.|++|.|+.+|+.
T Consensus        56 ~d~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~F~~~D~d~~G~i~~~e~~  107 (147)
T 4ds7_A           56 IDVDGNHAIEFSEFLALMSRQLKC--NDSEQELLEAFKVFDKNGDGLISAAELK  107 (147)
T ss_dssp             HCTTSSSEEEHHHHHHHHHHHHHT--HHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             hccCCCCcCcHHHHHHHHHHhccC--CCcHHHHHHHHHHhCCCCCCeECHHHHH
Confidence            467788999999988654333222  2233456677999999999999998875

>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}

Probab=87.79  E-value=0.26  Score=44.66  Aligned_cols=51  Identities=25%  Similarity=0.326  Sum_probs=37.8

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+...-......++++   +...|+.+|.|++|.|+.+|+.
T Consensus       138 ~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~---l~~~F~~~D~d~dG~I~~~Ef~  188 (256)
T 2jul_A          138 FDADGNGAIHFEDFVVGLSILLRGTVHEK---LKWAFNLYDINKDGCITKEEML  188 (256)
T ss_dssp             SSCSCCSEECSHHHHHHHHHHHSCCHHHH---HHHHHHHTCCSSSSCBCHHHHH
T ss_pred             hccCCCCcCcHHHHHHHHHHHhccChHHH---HHHHHHHhCCCCCCcCcHHHHH
Confidence            57788999999999875433333334444   4556889999999999999875

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=87.78  E-value=0.25  Score=40.39  Aligned_cols=52  Identities=25%  Similarity=0.348  Sum_probs=38.9

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+............  ...+...|+.+|.|++|.|+.+|+.
T Consensus        68 ~d~~~~g~i~~~eF~~~~~~~~~~~~~--~~~~~~~F~~~D~d~~G~i~~~el~  119 (161)
T 3fwb_A           68 YDSEGRHLMKYDDFYIVMGEKILKRDP--LDEIKRAFQLFDDDHTGKISIKNLR  119 (161)
T ss_dssp             HCTTSSSCEEHHHHHHHHHHHHHTCCH--HHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             hCcCCCCeEeHHHHHHHHHHHHhcCCc--HHHHHHHHHHHcCCCCCeEeHHHHH
Confidence            477889999999998765544443333  2345667999999999999999875

>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A

Probab=87.76  E-value=0.12  Score=40.68  Aligned_cols=54  Identities=24%  Similarity=0.366  Sum_probs=32.7

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||.................++...|+.+|.|++|.|+.+|+.
T Consensus        45 ~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~   98 (134)
T 1jfj_A           45 IDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVT   98 (134)
T ss_dssp             HCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHHHHHCCSSSSEEEHHHHH
T ss_pred             HcCCCCCeEcHHHHHHHHHHhcccccCCCHHHHHHHHHHHCCCCCCccCHHHHH
Confidence            456777888888876532100012222333346777888888888888877764

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A

Probab=87.75  E-value=0.24  Score=43.72  Aligned_cols=54  Identities=17%  Similarity=0.391  Sum_probs=41.0

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC------CCCHHHHHHH-HhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG------KIAEKDILQI-CNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g------~is~edi~~i-~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...|      .++++++.++ .+-|++.|.|++|.|+.+|..
T Consensus       137 ~~D~d~dG~Is~~El~~-~l~~~~~~~~~~~~s~~e~~~~~~~~~~~~D~d~dG~Is~~EF~  197 (214)
T 2l4h_A          137 IFDFDDDGTLNREDLSR-LVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQ  197 (214)
T ss_dssp             HHCTTCSSCBCHHHHHH-HHHHHHHSSSCTTCSCTHHHHHHHHHHHHHCCSCCSSBCSHHHH
T ss_pred             HhCCCCCCcCCHHHHHH-HHHHHhccccCCCCCHHHHHHHHHHHHHHhCCCCCCcCCHHHHH
Confidence            45889999999999765 333432      6888887753 346888999999999998864

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B

Probab=87.65  E-value=0.3  Score=40.44  Aligned_cols=51  Identities=22%  Similarity=0.346  Sum_probs=39.0

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+... +...| .++++++..+   |+..|.|++|.|+.+|..
T Consensus       103 ~~D~d~~G~I~~~el~~~-l~~~g~~~~~~~~~~~---~~~~D~d~dg~I~~~eF~  154 (166)
T 2mys_B          103 VLDPDGKGSIKKSFLEEL-LTTGGGRFTPEEIKNM---WAAFPPDVAGNVDYKNIC  154 (166)
T ss_pred             HhCCCCCcceeHHHHHHH-HHHcCCCCCHHHHHHH---HHhcCCCCCCeEeHHHHH
Confidence            457889999999998753 44555 5788887666   455689999999988765

>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A

Probab=87.57  E-value=0.33  Score=40.95  Aligned_cols=52  Identities=23%  Similarity=0.373  Sum_probs=39.2

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..|+.. .+...| .++++++..+   |+++|.|++|.|+.+|..
T Consensus       116 ~~~D~d~~G~Is~~El~~-~l~~~g~~~~~~~~~~~---~~~~D~d~dG~i~~~eF~  168 (191)
T 1uhk_A          116 DIVDKDQNGAITLDEWKA-YTKAAGIIQSSEDCEET---FRVCDIDESGQLDVDEMT  168 (191)
T ss_dssp             HHHCTTCSSEECHHHHHH-HHHHHTSCCSHHHHHHH---HHHSCCCTTSCEEHHHHH
T ss_pred             HHhcCCCCCcCcHHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            345788999999999865 345556 4678777655   666789999999988764

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4

Probab=87.56  E-value=0.18  Score=38.99  Aligned_cols=46  Identities=20%  Similarity=0.348  Sum_probs=31.4

Q ss_pred             CCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          325 DNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       325 d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      |.+|.++..||+...  ..   ..+...++...|+.+|.|++|.|+.+|+.
T Consensus        19 d~~g~i~~~eF~~~~--~~---~~~~~~~l~~~F~~~D~d~~G~i~~~el~   64 (109)
T 5pal_A           19 KDPGTFDYKRFFHLV--GL---KGKTDAQVKEVFEILDKDQSGFIEEEELK   64 (109)
T ss_dssp             CSTTCCCHHHHHHHH--TC---TTCCHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             CCCCcCcHHHHHHHH--hh---ccCcHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence            347888888887642  11   12233455677888899999999988875

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}

Probab=87.52  E-value=0.2  Score=39.74  Aligned_cols=30  Identities=17%  Similarity=0.255  Sum_probs=23.3

Q ss_pred             CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          346 IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       346 is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +++++..++.+.|+.+|.|++|.|+.+||.
T Consensus         8 ls~~~~~~l~~~F~~~D~d~dG~I~~~El~   37 (111)
T 2kgr_A            8 VPQSSRLKYRQLFNSHDKTMSGHLTGPQAR   37 (111)
T ss_dssp             SCHHHHHHHHHHHHTTSCSSCCEEEHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence            466777778888888888888888887764

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=87.52  E-value=0.28  Score=39.33  Aligned_cols=51  Identities=20%  Similarity=0.386  Sum_probs=38.5

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...|. ++++++..+   |+.+|.|++|.|+.+|..
T Consensus        84 ~~D~d~~G~i~~~e~~~-~l~~~g~~~~~~~~~~~---~~~~d~~~dg~i~~~eF~  135 (145)
T 2bl0_B           84 ALDKEGNGTIQEAELRQ-LLLNLGDALTSSEVEEL---MKEVSVSGDGAINYESFV  135 (145)
T ss_dssp             HHCSSSSSEEEHHHHHH-HHHHSSSCCCHHHHHHH---HTTCCCCTTSEEEHHHHH
T ss_pred             HhCCCCCCeEcHHHHHH-HHHHcCCCCCHHHHHHH---HHHcCCCCCCcEeHHHHH
Confidence            34778999999988875 4555664 678877655   567789999999988764

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4

Probab=87.50  E-value=0.31  Score=37.54  Aligned_cols=51  Identities=22%  Similarity=0.293  Sum_probs=37.5

Q ss_pred             eeecCCCCCcccchHHHHHHHHh----CCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEM----GKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~----g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...    ..++++++..+   |++.|.|++|.|+.+|..
T Consensus        49 ~~D~d~~G~i~~~el~~-~l~~~~~~g~~~~~~~~~~~---~~~~D~~~dg~i~~~eF~  103 (109)
T 5pal_A           49 ILDKDQSGFIEEEELKG-VLKGFSAHGRDLNDTETKAL---LAAGDSDHDGKIGADEFA  103 (109)
T ss_dssp             HHCTTCSSEECHHHHHT-HHHHHCTTCCCCCHHHHHHH---HHHHCTTCSSSEEHHHHH
T ss_pred             HHCCCCCCcCcHHHHHH-HHHHHHHcCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            35778999999988764 34443    35678887665   556689999999988764

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=87.46  E-value=0.41  Score=38.36  Aligned_cols=48  Identities=21%  Similarity=0.228  Sum_probs=34.5

Q ss_pred             CCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          326 NDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       326 ~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ++|.++..||+............+  ..+...|+.+|.|++|.|+.+|+.
T Consensus        52 ~~g~i~~~eF~~~~~~~~~~~~~~--~~l~~~F~~~D~d~~G~I~~~El~   99 (143)
T 3j04_B           52 APGPINFTMFLTMFGEKLNGTDPE--DVIRNAFACFDEEASGFIHEDHLR   99 (143)
T ss_dssp             SSSCCCHHHHHHHHHHTTTSSCCH--HHHHHHHTTSCSSSCCCCCTTTHH
T ss_pred             CCCCcCHHHHHHHHHHHhccCCcH--HHHHHHHHHHCCCCCCeEcHHHHH
Confidence            788899999886544333332222  345677999999999999999975

>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5

Probab=87.46  E-value=0.22  Score=42.35  Aligned_cols=51  Identities=25%  Similarity=0.328  Sum_probs=37.0

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||....-......+++   .+...|+.+|.|++|.|+.+|+.
T Consensus        72 ~D~d~~g~i~~~Ef~~~~~~~~~~~~~~---~~~~~f~~~D~d~~G~I~~~E~~  122 (193)
T 1bjf_A           72 FDANGDGTIDFREFIIALSVTSRGKLEQ---KLKWAFSMYDLDGNGYISKAEML  122 (193)
T ss_dssp             HCSSCSSEEEHHHHHHHHHHHTSSCHHH---HHHHHHHHHCTTCSSCEEHHHHH
T ss_pred             hCCCCCCcCcHHHHHHHHHHHcCCCHHH---HHHHHHhhcCCCCCCeECHHHHH
Confidence            5778899999999986543332333333   34567889999999999998874

>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A

Probab=87.45  E-value=0.22  Score=44.31  Aligned_cols=52  Identities=25%  Similarity=0.340  Sum_probs=38.0

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||+...-.......++   .+...|+..|.|++|.|+.+|+.
T Consensus       110 ~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~---~l~~~F~~~D~d~dG~Is~~E~~  161 (229)
T 3dd4_A          110 AFDTDHNGAVSFEDFIKGLSILLRGTVQE---KLNWAFNLYDINKDGYITKEEML  161 (229)
T ss_dssp             TTCSSCCSSCCHHHHHHHHHHHHHSCHHH---HHHHHHHHHCTTCSSCCBHHHHH
T ss_pred             HcCCCCCCeEeHHHHHHHHHHHcCCChHH---HHHHHHHHhCCCCCCeECHHHHH
Confidence            45778899999999986543333222333   45667899999999999998875

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}

Probab=87.37  E-value=0.33  Score=41.99  Aligned_cols=50  Identities=24%  Similarity=0.470  Sum_probs=39.9

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...| ++++++..+   |+++|.|++|.|+.+|..
T Consensus       136 ~~D~d~~G~Is~~El~~-~l~~~g-~~~~~~~~~---~~~~D~d~dG~I~~~EF~  185 (208)
T 2hpk_A          136 VLDDDGDGTVDVDELKT-MMKAFD-VPQEAAYTF---FEKADTDKSGKLERTELV  185 (208)
T ss_dssp             HHCTTCSSSBCHHHHHH-HHHHTT-SCTTHHHHH---HHHHCTTCCSSBCHHHHH
T ss_pred             HhCCCCCCcCCHHHHHH-HHHHhC-cCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            45788999999999875 456788 888887665   556789999999998864

>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5

Probab=87.22  E-value=0.27  Score=43.66  Aligned_cols=52  Identities=25%  Similarity=0.290  Sum_probs=37.7

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||+...-......++++   +...|+..|.|++|.|+.+|+.
T Consensus        97 ~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~---l~~~F~~~D~d~dG~Is~~E~~  148 (224)
T 1s1e_A           97 AFDTTQTGSVKFEDFVTALSILLRGTVHEK---LRWTFNLYDINKDGYINKEEMM  148 (224)
T ss_dssp             HHCTTCSSCBCHHHHHHHHHHHHHCCHHHH---HHHHHHHHCTTCCSEECHHHHH
T ss_pred             HhcCCCCCcEeHHHHHHHHHHHccCCHHHH---HHHHHHHHcCCCCCeECHHHHH
Confidence            357788999999999865433333333333   4566889999999999999875

>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A

Probab=87.21  E-value=0.36  Score=40.41  Aligned_cols=43  Identities=23%  Similarity=0.327  Sum_probs=20.8

Q ss_pred             ecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCcccccccc
Q 040114          323 DLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADL  374 (378)
Q Consensus       323 d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~  374 (378)
                      |.+++|.++..||+...-         ....+...|+..|.|++|.|+.+|+
T Consensus        57 D~~~~g~i~~~eF~~~~~---------~~~~~~~~F~~~D~d~~G~i~~~el   99 (173)
T 1alv_A           57 DSDTTGKLGFEEFKYLWN---------NIKKWQAIYKQFDVDRSGTIGSSEL   99 (173)
T ss_dssp             CTTCSSSBCHHHHHHHHH---------HHHHHHHHHHHHCTTCCSSBCTTTH
T ss_pred             cCCCCCccCHHHHHHHHH---------HHHHHHHHHHHHCCCCCCCCCHHHH
Confidence            444555555555543211         1233444555555555555555554

>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A

Probab=87.19  E-value=0.32  Score=40.33  Aligned_cols=45  Identities=18%  Similarity=0.234  Sum_probs=28.3

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+...-.         ...+...|+..|.|++|.|+.+|+.
T Consensus        49 ~D~~~~g~i~~~eF~~~~~~---------~~~~~~~F~~~D~d~~G~i~~~el~   93 (165)
T 1k94_A           49 LDRDHTGKMGFNAFKELWAA---------LNAWKENFMTVDQDGSGTVEHHELR   93 (165)
T ss_dssp             HCTTCSSCBCHHHHHHHHHH---------HHHHHHHHHHHCTTCCSBCCHHHHH
T ss_pred             hCCCCCCcCCHHHHHHHHHH---------HHHHHHHHHHhCCCCCceECHHHHH
Confidence            45566777777777653211         1345666777777777777777653

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}

Probab=87.16  E-value=0.26  Score=39.04  Aligned_cols=50  Identities=18%  Similarity=0.339  Sum_probs=37.0

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+... +. ....+++++..+   |++.|.|++|.|+.+|..
T Consensus        22 ~~D~d~dG~I~~~El~~~-l~-~~~~~~~~~~~i---~~~~D~d~dG~I~~~EF~   71 (111)
T 2kgr_A           22 SHDKTMSGHLTGPQARTI-LM-QSSLPQAQLASI---WNLSDIDQDGKLTAEEFI   71 (111)
T ss_dssp             TTSCSSCCEEEHHHHHHH-HH-TTCCCHHHHHHH---HHHHCSSCCSEEEHHHHH
T ss_pred             HHCCCCCCcCcHHHHHHH-HH-hCCCCHHHHHHH---HHHHCCCCCCCCcHHHHH
Confidence            346788999999887643 22 445788877665   566789999999988764

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}

Probab=87.14  E-value=0.39  Score=35.76  Aligned_cols=50  Identities=22%  Similarity=0.399  Sum_probs=37.6

Q ss_pred             eecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..|+.. .|...|. .+++++..+   |+.+|.|++|.|+.+|..
T Consensus        18 ~D~d~~G~i~~~el~~-~l~~~g~~~~~~~~~~l---~~~~d~~~dg~i~~~eF~   68 (92)
T 2kn2_A           18 FDKDQNGYISASELRH-VMINLGEKLTDEEVEQM---IKEADLDGDGQVNYEEFV   68 (92)
T ss_dssp             HCTTCSSEECHHHHHH-HHHHTTCCCCHHHHHHH---HHHHCSSCCSSEEHHHHH
T ss_pred             HCCCCCCeEcHHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            4778899999988764 4556664 577877665   556789999999988764

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8

Probab=87.12  E-value=0.31  Score=40.63  Aligned_cols=45  Identities=20%  Similarity=0.250  Sum_probs=30.4

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+...-.         ...+...|+.+|.|++|.|+.+|+.
T Consensus        51 ~D~~~~g~i~~~eF~~~~~~---------~~~~~~~F~~~D~d~~G~i~~~el~   95 (167)
T 1gjy_A           51 LDRDMSGTMGFNEFKELWAV---------LNGWRQHFISFDSDRSGTVDPQELQ   95 (167)
T ss_dssp             HCTTCCSCBCHHHHHHHHHH---------HHHHHHHHHHHCTTCCSEECHHHHH
T ss_pred             HCCCCCCcCCHHHHHHHHHH---------HHHHHHHHHHhCCCCCCcCCHHHHH
Confidence            45667777888887654321         2455667777888888888877764

>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A

Probab=87.02  E-value=0.39  Score=41.41  Aligned_cols=55  Identities=25%  Similarity=0.279  Sum_probs=41.8

Q ss_pred             eeecCCCCCcccchHHHHH---HHHhC-CCCHHHHHHH-HhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYK---LKEMG-KIAEKDILQI-CNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~---L~~~g-~is~edi~~i-~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+....   +...| .++++++..+ ..-|+++|.|++|.|+.+|+.
T Consensus       119 ~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~  178 (207)
T 2ehb_A          119 LYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWK  178 (207)
T ss_dssp             HHCTTCCSSEEHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            4578899999999986432   12334 6788888665 467899999999999998864

>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A

Probab=87.01  E-value=0.39  Score=40.46  Aligned_cols=49  Identities=29%  Similarity=0.600  Sum_probs=37.7

Q ss_pred             ecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          323 DLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       323 d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      |.+++|.++..|+... +...|. ++++++..+   |+++|.|++|.|+.+|+.
T Consensus       112 D~d~~G~I~~~E~~~~-l~~~g~~~~~~~~~~~---~~~~D~d~dG~i~~~ef~  161 (186)
T 2hps_A          112 DTDKDGYVSLPEFKAF-LQAVGPDLTDDKAITC---FNTLDFNKNGQISRDEFL  161 (186)
T ss_dssp             CTTCSSEEEHHHHHHH-HHHHCTTCCHHHHHHH---HHHHCTTCSSEEEHHHHH
T ss_pred             cCCCCCcCCHHHHHHH-HHHhCCCCCHHHHHHH---HHHHcCCCCCcCcHHHHH
Confidence            8889999999998754 444554 677777555   666789999999988864

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=86.96  E-value=0.31  Score=41.65  Aligned_cols=53  Identities=23%  Similarity=0.387  Sum_probs=37.7

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .+|.++++.++-.||+........  ..+...++...|+.+|.|++|.|+.+||.
T Consensus        55 ~~d~d~~~~i~~~ef~~~~~~~~~--~~~~~~~l~~aF~~fD~d~~G~I~~~el~  107 (176)
T 2lhi_A           55 EIDVDGNHQIEFSEFLALMSRQLK--SNDSEQELLEAFKVFDKNGDGLISAAELK  107 (176)
T ss_dssp             TTCSSCSSSBCTTHHHHHHTSSCC--SSHHHHHHHHHHHHHCSSCSSSBCHHHHH
T ss_pred             HhCcCCCccchHHHHHHHHHHhcc--cCCcHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            356778888999998764322221  22333456788999999999999999875

>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A

Probab=86.89  E-value=0.16  Score=37.50  Aligned_cols=31  Identities=19%  Similarity=0.281  Sum_probs=27.5

Q ss_pred             CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          345 KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       345 ~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .++++++.++.+.|+.+|.|++|.|+.+||.
T Consensus         7 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~   37 (86)
T 1j7q_A            7 ALGPEEKDECMKIFDIFDRNAENIAPVSDTM   37 (86)
T ss_dssp             CCSSTHHHHHHHHHHHHSTTTTSCBCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            4577888899999999999999999999875

>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B

Probab=86.89  E-value=0.1  Score=43.78  Aligned_cols=20  Identities=30%  Similarity=0.393  Sum_probs=11.4

Q ss_pred             HhhhcccCCCCCcccccccc
Q 040114          355 CNQFDLIDDSKCGKITVADL  374 (378)
Q Consensus       355 ~~~f~~ld~~~~G~l~~~d~  374 (378)
                      .+.|+.+|.|++|.|+.+||
T Consensus        88 ~~aF~~fD~d~~G~I~~~el  107 (153)
T 3i5g_B           88 RNAFSMFDEDGQGFIPEDYL  107 (153)
T ss_dssp             HHHHHTTCSSCSSCCCHHHH
T ss_pred             HHHHhccccCCCCeEeHHHH
Confidence            44555556666666655554

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A

Probab=86.78  E-value=0.26  Score=44.21  Aligned_cols=53  Identities=25%  Similarity=0.286  Sum_probs=40.5

Q ss_pred             eecCCCCCcccchHHHHHHHHhC-----CCCHHHHHH-HHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMG-----KIAEKDILQ-ICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g-----~is~edi~~-i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..|+... +...+     .++++++.. +..-|+++|.|++|.|+.+|+.
T Consensus       205 ~D~d~~G~Is~~E~~~~-l~~~~~~~~~~~~~~~~~~~~~~l~~~~D~d~dG~is~~EF~  263 (272)
T 2be4_A          205 YDVSRTGALEGPEVDGF-VKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELA  263 (272)
T ss_dssp             HCTTCCSEEETHHHHHH-HHHHHHHHSSSCCHHHHHHHHHHHHHHHCCSTTCEEEHHHHH
T ss_pred             hCCCCCCeecHHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            47789999999997643 33333     588988876 4446888999999999998864

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A

Probab=86.77  E-value=0.17  Score=43.67  Aligned_cols=51  Identities=31%  Similarity=0.467  Sum_probs=36.8

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||+...... ...++++   +...|+.+|.|++|.|+.+|+.
T Consensus        95 ~~D~d~~g~i~~~EF~~~~~~~-~~~~~~~---l~~~F~~~D~d~~G~Is~~El~  145 (191)
T 3k21_A           95 QIDSDGSGKIDYTEFIAAALDR-KQLSKKL---IYCAFRVFDVDNDGEITTAELA  145 (191)
T ss_dssp             HHCTTCSSSEEHHHHHHHHSCG-GGCCHHH---HHHHHHHHSTTCSSCBCHHHHH
T ss_pred             HhCCCCCCeEeHHHHHHHHHhh-hhccHHH---HHHHHHHhCCCCCCcCCHHHHH
Confidence            3477888999999988653222 2233443   4567899999999999999875

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8

Probab=86.75  E-value=0.34  Score=41.57  Aligned_cols=52  Identities=19%  Similarity=0.362  Sum_probs=29.9

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..|+.. .+...| .++++++..+   |+++|.|++|.|+.+|..
T Consensus       100 ~~~D~d~~G~i~~~e~~~-~l~~~g~~~~~~~~~~~---~~~~D~d~dg~i~~~eF~  152 (191)
T 1y1x_A          100 RKRDSSGDGRLDSNEVRA-ALLSSGYQVSEQTFQAL---MRKFDRQRRGSLGFDDYV  152 (191)
T ss_dssp             HHHCTTSSSCBCHHHHHH-HHHTTSCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             HHhCCCCCCeEcHHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            345666666676666553 233333 3455555444   445577777777776654

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...

Probab=86.68  E-value=0.39  Score=39.22  Aligned_cols=51  Identities=25%  Similarity=0.416  Sum_probs=38.6

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+... +...| .++++++..+   |+.+|.|++|.|+.+|..
T Consensus       104 ~~D~d~~G~I~~~e~~~~-l~~~g~~~~~~~~~~~---~~~~d~~~dg~i~~~eF~  155 (162)
T 1top_A          104 IFDKNADGFIDIEELGEI-LRATGEHVTEEDIEDL---MKDSDKNNDGRIDFDEFL  155 (162)
T ss_dssp             HHCTTCSSCBCHHHHHHH-HHTTTCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            347889999999998753 44555 5678877665   566688999999988864

>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A

Probab=86.53  E-value=0.22  Score=42.22  Aligned_cols=51  Identities=25%  Similarity=0.282  Sum_probs=36.6

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||....-......++++   +..-|+.+|.|++|.|+.+|+.
T Consensus        72 ~D~d~~g~i~~~ef~~~~~~~~~~~~~~~---~~~~f~~~D~d~~G~i~~~e~~  122 (190)
T 1g8i_A           72 FDENKDGRIEFSEFIQALSVTSRGTLDEK---LRWAFKLYDLDNDGYITRNEML  122 (190)
T ss_dssp             HCTTCSSEEEHHHHHHHHHHHHHCCHHHH---HHHHHHHHCTTCSSEEEHHHHH
T ss_pred             HhcCCCCeEeHHHHHHHHHHhcCCCHHHH---HHHHHHhhcCCCCCeECHHHHH
Confidence            47788999999998764333222333333   4566889999999999998875

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=86.51  E-value=0.14  Score=50.78  Aligned_cols=20  Identities=30%  Similarity=0.501  Sum_probs=10.3

Q ss_pred             HhhhcccCCCCCcccccccc
Q 040114          355 CNQFDLIDDSKCGKITVADL  374 (378)
Q Consensus       355 ~~~f~~ld~~~~G~l~~~d~  374 (378)
                      .+.|+.+|.|++|.|+.+||
T Consensus       378 reAFk~fDkDgdG~IS~eEL  397 (440)
T 3u0k_A          378 REAFRVFDKDGNGYISAAEL  397 (440)
T ss_dssp             HHHHHHHCTTCSSEECHHHH
T ss_pred             HHHHHHHCCCCcCcCCHHHH
Confidence            33455555555555555554

>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}

Probab=86.46  E-value=0.41  Score=37.05  Aligned_cols=51  Identities=14%  Similarity=0.302  Sum_probs=38.4

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...|. .+++++..+   |++.|.|++|.|+.+|..
T Consensus        40 ~~D~d~~G~I~~~el~~-~l~~~g~~~~~~~~~~l---~~~~D~d~dg~i~~~eF~   91 (107)
T 2d58_A           40 EFDLNGNGDIDIMSLKR-MLEKLGVPKTHLELKKL---IGEVSSGSGETFSYPDFL   91 (107)
T ss_dssp             TSCCCTTSCEEHHHHHH-HHHHTTCCCCHHHHHHH---HHHHCSSSSSEECHHHHH
T ss_pred             HHCCCCCCcCcHHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCeEcHHHHH
Confidence            45788999999988764 4556664 577777665   556689999999988764

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A

Probab=86.45  E-value=0.37  Score=37.00  Aligned_cols=51  Identities=25%  Similarity=0.328  Sum_probs=37.6

Q ss_pred             eeecCCCCCcccchHHHHHHHHh---C-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEM---G-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~---g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...   | ..+++++..+   |++.|.|++|.|+.+|..
T Consensus        49 ~~D~d~~G~I~~~el~~-~l~~~~~~g~~~~~~~~~~~---~~~~D~~~dg~i~~~eF~  103 (109)
T 1rwy_A           49 ILDKDKSGFIEEDELGS-ILKGFSSDARDLSAKETKTL---MAAGDKDGDGKIGVEEFS  103 (109)
T ss_dssp             HHSTTCSSEECHHHHHT-HHHHHCTTCCCCCHHHHHHH---HHHHCTTCSSSEEHHHHH
T ss_pred             HHCCCCCCeEcHHHHHH-HHHHHhccCCCCCHHHHHHH---HHHHCCCCCCcCCHHHHH
Confidence            35778999999988764 34454   3 4788887665   455688999999988764

>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}

Probab=86.43  E-value=0.29  Score=41.96  Aligned_cols=44  Identities=20%  Similarity=0.384  Sum_probs=33.9

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +|.+++|.++..||+... .        .+.++...|+..| |++|.|+.+||.
T Consensus        55 ~D~d~~G~I~f~EF~~~~-~--------~~~~l~~aF~~fD-d~~G~I~~~El~   98 (174)
T 2i7a_A           55 MELKVNGRLDQEEFARLW-K--------RLVHYQHVFQKVQ-TSPGVLLSSDLW   98 (174)
T ss_dssp             HCSSCSSEECHHHHHHHH-H--------HHHHHHHHHHHHC-SBTTBEEGGGHH
T ss_pred             HCCCCCCcCCHHHHHHHH-H--------HHHHHHHHHHHhc-CCCCcCCHHHHH
Confidence            467788899999987532 1        1246778899999 999999999875

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A

Probab=86.41  E-value=0.35  Score=42.73  Aligned_cols=55  Identities=25%  Similarity=0.330  Sum_probs=41.9

Q ss_pred             eeecCCCCCcccchHHHHHH---HHhC-CCCHHHHHHH-HhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKL---KEMG-KIAEKDILQI-CNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L---~~~g-~is~edi~~i-~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+....-   ...| .++++++..+ .+-|++.|.|++|.|+.+|+.
T Consensus       130 ~~D~d~~G~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~EF~  189 (226)
T 2zfd_A          130 LYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWR  189 (226)
T ss_dssp             HHCTTSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHH
T ss_pred             HhCCCCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            35788999999999864321   2445 5678888766 467899999999999998864

>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A

Probab=86.37  E-value=0.35  Score=41.60  Aligned_cols=45  Identities=20%  Similarity=0.246  Sum_probs=25.7

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+...-.         ...+.+.|+.+|.|++|.|+.+|+.
T Consensus        82 ~D~d~~g~i~~~eF~~~~~~---------~~~~~~~F~~~D~d~~G~I~~~el~  126 (198)
T 1juo_A           82 LDRDMSGTMGFNEFKELWAV---------LNGWRQHFISFDTDRSGTVDPQELQ  126 (198)
T ss_dssp             HCTTCSSCEEHHHHHHHHHH---------HHHHHHHHHTTCTTCCSEECHHHHH
T ss_pred             hCCCCCCeECHHHHHHHHHH---------HHHHHHHHHHhCCCCCCcCCHHHHH
Confidence            35556666666666543211         1345556666666666766666653

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A

Probab=86.33  E-value=0.5  Score=38.49  Aligned_cols=51  Identities=24%  Similarity=0.393  Sum_probs=38.8

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...| +++++++..+   |+.+|.|++|.|+.+|..
T Consensus        99 ~~D~d~~G~I~~~el~~-~l~~~g~~~~~~~~~~~---~~~~D~d~dg~i~~~eF~  150 (158)
T 2jnf_A           99 LYDKEGNGYISTDVMRE-ILAELDETLSSEDLDAM---IDEIDADGSGTVDFEEFM  150 (158)
T ss_dssp             HHCSSSSSSEEHHHHHH-HHHHHCTTCCHHHHHHH---HHHHCSSCCSEECSHHHH
T ss_pred             HhCCCCCCeEcHHHHHH-HHHHhCCcCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            45788999999999865 344555 5688887665   556688999999998864

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A

Probab=86.22  E-value=0.37  Score=39.96  Aligned_cols=50  Identities=26%  Similarity=0.462  Sum_probs=37.9

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...| ++++++..+   |+++|.|++|.|+.+|..
T Consensus       102 ~~D~d~~G~i~~~e~~~-~l~~~g-~~~~~~~~~---~~~~D~d~dg~i~~~ef~  151 (174)
T 1q80_A          102 AVDTNEDNNISRDEYGI-FFGMLG-LDKTMAPAS---FDAIDTNNDGLLSLEEFV  151 (174)
T ss_dssp             HHCTTSSSSBCHHHHHH-HHHHHT-CCGGGHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             HhCCCCCCcccHHHHHH-HHHHcC-CCHHHHHHH---HHHhCCCCCceEeHHHHH
Confidence            34788999999999765 344556 788877655   556689999999988764

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4

Probab=86.19  E-value=0.45  Score=36.61  Aligned_cols=51  Identities=20%  Similarity=0.296  Sum_probs=37.8

Q ss_pred             eeecCCCCCcccchHHHHHHHHh---C-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEM---G-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~---g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...   | ..+++++..+   |++.|.|++|.|+.+|..
T Consensus        50 ~~D~d~~G~I~~~el~~-~l~~~~~~g~~~~~~~~~~~---~~~~D~~~dg~i~~~eF~  104 (109)
T 1bu3_A           50 VIDQDKSGFIEEDELKL-FLQVFSAGARALTDAETKAF---LKAGDSDGDGAIGVDEWA  104 (109)
T ss_dssp             HHCTTCSSSEEHHHHHT-HHHHHSTTCCCCCHHHHHHH---HHHHCTTCSSEECHHHHH
T ss_pred             HHCCCCCCcCcHHHHHH-HHHHHcccCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            34778999999988764 34555   3 4688887665   456688999999988764

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}

Probab=86.14  E-value=0.23  Score=37.08  Aligned_cols=32  Identities=19%  Similarity=0.400  Sum_probs=27.5

Q ss_pred             CCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          344 GKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       344 g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      |..+++...++.+.|+.+|.|++|.|+.+|+.
T Consensus         1 g~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~   32 (92)
T 2kn2_A            1 GHMDTDAEEELKEAFKVFDKDQNGYISASELR   32 (92)
T ss_dssp             CCCCCHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHCCCCCCeEcHHHHH
Confidence            45567788889999999999999999998875

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A

Probab=85.89  E-value=0.38  Score=42.38  Aligned_cols=52  Identities=13%  Similarity=0.114  Sum_probs=38.0

Q ss_pred             eecCCCCC-cccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGS-ISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~-v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|. ++..||+............+  ..+...|+..|.|++|.|+.+|+.
T Consensus       100 ~D~d~dG~~I~f~EF~~~~~~~~~~~~~~--~~l~~~F~~~D~d~dG~Is~~El~  152 (214)
T 2l4h_A          100 FSTSPAKDSLSFEDFLDLLSVFSDTATPD--IKSHYAFRIFDFDDDGTLNREDLS  152 (214)
T ss_dssp             HCCSSSCCSEEHHHHHHHHHHTSSCSCHH--HHHHHHHHHHCTTCSSCBCHHHHH
T ss_pred             hCcCCCCCEecHHHHHHHHHHHcCCCCHH--HHHHHHHHHhCCCCCCcCCHHHHH
Confidence            36788999 99999987543332222222  345678999999999999999875

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=85.88  E-value=0.57  Score=37.96  Aligned_cols=52  Identities=25%  Similarity=0.437  Sum_probs=38.4

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+.........  ......+...|+.+|.|++|.|+.+|+.
T Consensus        55 ~d~~~~g~i~~~eF~~~~~~~~~~--~~~~~~l~~~F~~~D~d~~G~I~~~el~  106 (148)
T 1exr_A           55 VDADGNGTIDFPEFLSLMARKMKE--QDSEEELIEAFKVFDRDGNGLISAAELR  106 (148)
T ss_dssp             HCTTCSSSEEHHHHHHHHHHHHHH--HHHHHHHHHHHHHHSTTCSSCBCHHHHH
T ss_pred             HCCCCCCcCcHHHHHHHHHhcccC--CCcHHHHHHHHHHhCCCCCCcCCHHHHH
Confidence            577889999999997654333222  2334456778999999999999999874

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A

Probab=85.82  E-value=0.35  Score=38.97  Aligned_cols=51  Identities=16%  Similarity=0.382  Sum_probs=38.6

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...| .++++++..+   |+++|.|++|.|+.+|..
T Consensus        91 ~~D~d~~G~I~~~el~~-~l~~~g~~~~~~~~~~~---~~~~d~d~dg~i~~~eF~  142 (148)
T 1m45_A           91 VFDKESTGKVSVGDLRY-MLTGLGEKLTDAEVDEL---LKGVEVDSNGEIDYKKFI  142 (148)
T ss_dssp             TTCSSSSSEEEHHHHHH-HHHHSTTCCCHHHHHHH---HTTCCCCTTSEEEHHHHH
T ss_pred             HhCCCCCCcCCHHHHHH-HHHHcCCCCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            45778999999988765 345555 4678877665   566789999999988764

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A

Probab=85.72  E-value=0.41  Score=42.30  Aligned_cols=53  Identities=19%  Similarity=0.080  Sum_probs=37.5

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||+...-........  ...+...|+.+|.|++|.|+.+|+.
T Consensus        93 ~~D~d~dG~I~~~Ef~~~~~~~~~~~~~--~~~l~~~F~~~D~d~~G~Is~~E~~  145 (226)
T 2zfd_A           93 LFDTKHNGILGFEEFARALSVFHPNAPI--DDKIHFSFQLYDLKQQGFIERQEVK  145 (226)
T ss_dssp             HHCSSCSSSBCHHHHHHHHHHTSTTSCH--HHHHHHHHHHHCTTSSSSEEHHHHH
T ss_pred             HHcCCCCCcCcHHHHHHHHHHHccCCCH--HHHHHHHHHHhCCCCCCcccHHHHH
Confidence            3577889999999997643322222222  2345677999999999999999875

>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}

Probab=85.68  E-value=0.2  Score=42.62  Aligned_cols=50  Identities=24%  Similarity=0.385  Sum_probs=34.6

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+... ......++   ..+...|+.+|.|++|.|+.+|+.
T Consensus        82 ~D~d~~g~i~~~Ef~~~~-~~~~~~~~---~~~~~~F~~~D~d~~G~I~~~El~  131 (180)
T 3mse_B           82 LDINDRGNITYTEFMAGC-YRWKNIES---TFLKAAFNKIDKDEDGYISKSDIV  131 (180)
T ss_dssp             HCTTCCSEECHHHHHHHH-SCCTTC-----CHHHHHHHHHCTTCSSCBCHHHHH
T ss_pred             hCCCCCCcCcHHHHHHHH-HhcccCCH---HHHHHHHHHHCCCCCCCCCHHHHH
Confidence            467788889998887542 12222222   455777889999999999998875

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...

Probab=85.61  E-value=0.52  Score=38.45  Aligned_cols=20  Identities=20%  Similarity=0.479  Sum_probs=10.6

Q ss_pred             HhhhcccCCCCCcccccccc
Q 040114          355 CNQFDLIDDSKCGKITVADL  374 (378)
Q Consensus       355 ~~~f~~ld~~~~G~l~~~d~  374 (378)
                      ...|+.+|.|++|.|+.+|+
T Consensus        90 ~~~F~~~D~d~~G~I~~~el  109 (156)
T 1wdc_B           90 RNAFAMFDEQETKKLNIEYI  109 (156)
T ss_dssp             HHHHHTTCTTCCSCEEHHHH
T ss_pred             HHHHHHHCcCCCCccCHHHH
Confidence            34455555555555555554

>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}

Probab=85.61  E-value=0.24  Score=42.09  Aligned_cols=51  Identities=22%  Similarity=0.317  Sum_probs=37.0

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||.... ...+. .+++++   ...|+..|.|++|.|+.+|+.
T Consensus        71 ~~D~d~~G~i~~~ef~~~~-~~~~~~~~~~~~---~~~f~~~D~d~~G~i~~~e~~  122 (190)
T 2l2e_A           71 VFDADKNGYIDFKEFICAL-SVTSRGELNDKL---IWAFQLYDLDNNGLISYDEML  122 (190)
T ss_dssp             HHCSSSTTCEEHHHHHHHH-TTSSCSCSHHHH---HHHHHHHCTTSCSCBCHHHHH
T ss_pred             HhcCCCCCeEeHHHHHHHH-HHHcCCCHHHHH---HHHHhHccCCCCCcCcHHHHH
Confidence            3577889999999988643 33333 344444   456888899999999998875

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A

Probab=85.55  E-value=0.26  Score=36.77  Aligned_cols=31  Identities=26%  Similarity=0.402  Sum_probs=28.0

Q ss_pred             CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          345 KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       345 ~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .++++++.++...|+.+|.|++|.|+.+|+.
T Consensus        13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~   43 (90)
T 1avs_A           13 FLSEEMIAEFKAAFDMFDADGGGDISTKELG   43 (90)
T ss_dssp             HBCHHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence            4678899999999999999999999998875

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A

Probab=85.40  E-value=0.4  Score=42.47  Aligned_cols=51  Identities=16%  Similarity=0.245  Sum_probs=29.3

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..|+.. .+...| +++++++..+.   ++.| |++|.|+.+|.+
T Consensus       124 ~~~D~d~~G~I~~~El~~-~l~~~g~~~~~~~~~~l~---~~~d-d~dg~I~~~eF~  175 (220)
T 3sjs_A          124 VMNARARSGTLEPHEILP-ALQQLGFYINQRTSLLLH---RLFA-RGMAFCDLNCWI  175 (220)
T ss_dssp             HHHCCSSTTEECHHHHHH-HHHHHTCCCCHHHHHHHH---HHHC---CCSEEHHHHH
T ss_pred             HHHCCCCCCCCcHHHHHH-HHHHhCCCCCHHHHHHHH---HHhc-CCCCcCcHHHHH
Confidence            456667777777777654 333443 45666665553   4445 677777776654

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}

Probab=85.30  E-value=0.081  Score=46.04  Aligned_cols=21  Identities=19%  Similarity=0.262  Sum_probs=11.2

Q ss_pred             HHhhhcccCCCCCcccccccc
Q 040114          354 ICNQFDLIDDSKCGKITVADL  374 (378)
Q Consensus       354 i~~~f~~ld~~~~G~l~~~d~  374 (378)
                      +..-|++.|.|++|.|+.+|.
T Consensus       169 ~~~l~~~~D~d~dG~Is~~EF  189 (197)
T 3pm8_A          169 IDSLLQEVDLNGDGEIDFHEF  189 (197)
T ss_dssp             HHHHHHHHCTTCSSSEEHHHH
T ss_pred             HHHHHHHHcCCCCCcCcHHHH
Confidence            344555555555555555543

>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A

Probab=85.30  E-value=0.38  Score=41.49  Aligned_cols=36  Identities=14%  Similarity=0.260  Sum_probs=24.3

Q ss_pred             HHHhCCCCHHHHHHHHhhhcccCCC--CCccccccccc
Q 040114          340 LKEMGKIAEKDILQICNQFDLIDDS--KCGKITVADLM  375 (378)
Q Consensus       340 L~~~g~is~edi~~i~~~f~~ld~~--~~G~l~~~d~~  375 (378)
                      +......+++++.++.+.|+.+|.|  ++|.|+.+|+.
T Consensus        25 l~~~~~~s~~~~~~l~~~F~~~D~d~~~~G~i~~~e~~   62 (207)
T 2ehb_A           25 LASVTPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQ   62 (207)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHTTSSSCSSCEEHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhccccCCCCccCHHHHH
Confidence            3445566777777777777777777  77777776653

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...

Probab=85.25  E-value=0.21  Score=40.88  Aligned_cols=54  Identities=28%  Similarity=0.437  Sum_probs=37.1

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCC-HHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIA-EKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is-~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+........... ......+...|+.+|.|++|.|+.+|+.
T Consensus        65 ~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~  119 (162)
T 1top_A           65 VDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELG  119 (162)
T ss_dssp             HCTTSCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSCBCHHHHH
T ss_pred             HcCCCCCcEeHHHHHHHHHHHhccccccccHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            35677888999998765433221100 1144566788999999999999998874

>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A

Probab=85.02  E-value=0.48  Score=37.37  Aligned_cols=48  Identities=13%  Similarity=0.132  Sum_probs=35.8

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|. +||.++..|... .|...| .+++++.++   +++.|.|++|.|+.+|..
T Consensus        24 ~D~-~dG~Is~~el~~-~l~~~g-l~~~el~~i---~~~~D~d~dG~id~~EF~   71 (106)
T 1eh2_A           24 LSP-VNGFLSGDKVKP-VLLNSK-LPVDILGRV---WELSDIDHDGMLDRDEFA   71 (106)
T ss_dssp             SCC-SSSCCBHHHHHH-HHHTTT-CCHHHHHHH---HHHHCSSCSSBCCHHHHH
T ss_pred             hCC-CCCeEcHHHHHH-HHHHcC-CCHHHHHHH---HHHHcCCCCCcCcHHHHH
Confidence            455 789999888653 344555 788887666   556899999999988754

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=84.95  E-value=0.18  Score=50.39  Aligned_cols=52  Identities=33%  Similarity=0.523  Sum_probs=35.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.|++|.++..||+..........++++   +...|+.+|.|++|.|+.+|+.
T Consensus       398 ~~D~d~~G~I~~~EF~~~~~~~~~~~~~~~---~~~~F~~~D~d~~G~Is~~El~  449 (494)
T 3lij_A          398 AADFDRNGYIDYSEFVTVAMDRKSLLSKDK---LESAFQKFDQDGNGKISVDELA  449 (494)
T ss_dssp             HHCTTCSSSEEHHHHHHHHSCHHHHTCHHH---HHHHHHHHCTTCSSEECHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHHHHhhhccccHHH---HHHHHHHHCCCCCCcCCHHHHH
Confidence            457788889999998765433333334443   4566777788888888887764

>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A

Probab=84.71  E-value=0.3  Score=34.79  Aligned_cols=49  Identities=16%  Similarity=0.440  Sum_probs=34.9

Q ss_pred             ecCCC-CCcccchHHHHHHHHhC-CC--CHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          323 DLDND-GSISKSEFVIYKLKEMG-KI--AEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       323 d~d~d-~~v~~~e~~~~~L~~~g-~i--s~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      |.+++ |.++..|+.. .|...| ..  +++++..+   |+++|.|++|.|+.+|..
T Consensus        16 D~d~~~G~i~~~el~~-~l~~~g~~~~~~~~~~~~l---~~~~D~~~~g~i~~~eF~   68 (76)
T 1qx2_A           16 AKEGDPNQISKEELKL-VMQTLGPSLLKGMSTLDEM---IEEVDKNGDGEVSFEEFL   68 (76)
T ss_dssp             TSSSCTTSEEHHHHHH-HHHHHGGGSCTTSCSHHHH---HHHHCTTCSSEECHHHHH
T ss_pred             ccCCCcCeECHHHHHH-HHHHhCCCcCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            67788 9999888764 344444 34  66666554   556689999999988764

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A

Probab=84.64  E-value=0.38  Score=43.13  Aligned_cols=53  Identities=25%  Similarity=0.466  Sum_probs=42.3

Q ss_pred             eecCCCCCcccchHHHHHHH----HhC---CCCHHHHHHHHhhh-cccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLK----EMG---KIAEKDILQICNQF-DLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~----~~g---~is~edi~~i~~~f-~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..|+... |.    ..|   ..+++++..+.+++ +.+|.|++|.|+.+|+.
T Consensus        20 ~D~d~~G~i~~~El~~~-l~~~~~~lg~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~   80 (272)
T 2be4_A           20 FDADDNGYIEGKELDDF-FRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELA   80 (272)
T ss_dssp             HCTTCCSEEEGGGHHHH-HHHHHHHHSTTSCCCHHHHHHHHHHHSCHHHHTCCSEEEHHHHH
T ss_pred             hcCCCCCCcCHHHHHHH-HHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEeHHHHH
Confidence            47789999999997643 33    556   67899998877654 99999999999988864

>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=84.50  E-value=0.16  Score=40.48  Aligned_cols=29  Identities=17%  Similarity=0.091  Sum_probs=18.1

Q ss_pred             CHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          347 AEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       347 s~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ++++..++.+.|+.+|.|++|.|+.+|+.
T Consensus        17 s~~~~~~~~~~F~~~D~d~dG~Is~~el~   45 (110)
T 1iq3_A           17 TEEQREYYVNQFRSLQPDPSSFISGSVAK   45 (110)
T ss_dssp             SSSSHHHHHHHHHHHCCSSSSEEEHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCeEcHHHHH
Confidence            44555566666666666777766666653

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A

Probab=84.47  E-value=0.26  Score=40.25  Aligned_cols=54  Identities=22%  Similarity=0.263  Sum_probs=38.4

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCC--HHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIA--EKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is--~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+...........  +.....+...|+.+|.|++|.|+.+|+.
T Consensus        59 ~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~  114 (158)
T 2jnf_A           59 FDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMR  114 (158)
T ss_dssp             HCTTCCSEECHHHHHHHHHHHCCCCCCTTTTSSTHHHHHHHHCSSSSSSEEHHHHH
T ss_pred             hCCCCCCcCcHHHHHHHHHHHhccccchhhHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence            46788899999999876544443310  0222345678999999999999999874

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}

Probab=84.45  E-value=0.28  Score=40.43  Aligned_cols=20  Identities=30%  Similarity=0.451  Sum_probs=9.4

Q ss_pred             HhhhcccCCCCCcccccccc
Q 040114          355 CNQFDLIDDSKCGKITVADL  374 (378)
Q Consensus       355 ~~~f~~ld~~~~G~l~~~d~  374 (378)
                      ...|+.+|.|++|.|+.+|+
T Consensus       102 ~~~F~~~D~d~~G~i~~~e~  121 (166)
T 2aao_A          102 FAAFTYFDKDGSGYITPDEL  121 (166)
T ss_dssp             HHHHHHHCTTCSSSBCHHHH
T ss_pred             HHHHHHhCCCCCCcCcHHHH
Confidence            34444444455555444443

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*

Probab=84.21  E-value=0.23  Score=42.01  Aligned_cols=54  Identities=19%  Similarity=0.399  Sum_probs=39.7

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC------CCCHHHHHH-HHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG------KIAEKDILQ-ICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g------~is~edi~~-i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...|      .++++++.. +..-|++.|.|++|.|+.+|..
T Consensus       106 ~~D~d~~G~I~~~El~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~  166 (183)
T 1dgu_A          106 IFDFDDDGTLNREDLSR-LVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQ  166 (183)
T ss_dssp             HHCTTCSSEEEHHHHHH-HHHHHHSSSCCCHHHHHHHHHHHHHHHHHHCTTSSSEEEHHHHH
T ss_pred             HhCCCCCCcCCHHHHHH-HHHHHhcccccCCCCHHHHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence            34788999999988765 344444      367777764 3345788899999999988864

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=84.11  E-value=0.2  Score=50.11  Aligned_cols=52  Identities=33%  Similarity=0.519  Sum_probs=31.9

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.|+||.++..||+..........+++   .+...|+.+|.|++|.|+.+|+.
T Consensus       407 ~~D~d~dG~I~~~EF~~~~~~~~~~~~~~---~~~~~F~~~D~d~dG~Is~~El~  458 (504)
T 3q5i_A          407 EVDFDKNGYIEYSEFISVCMDKQILFSEE---RLRRAFNLFDTDKSGKITKEELA  458 (504)
T ss_dssp             HHCTTCSSSEEHHHHHHHHSCHHHHTCHH---HHHHHHHHHCTTCCSEECHHHHH
T ss_pred             HhCCCCCCcEeHHHHHHHHHhhhcccCHH---HHHHHHHHhcCCCCCcCcHHHHH
Confidence            45677888888888875432222222333   34556777777777777777764

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A

Probab=84.10  E-value=0.48  Score=39.62  Aligned_cols=52  Identities=27%  Similarity=0.428  Sum_probs=37.1

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+.........  ......+...|+.+|.|++|.|+.+|+.
T Consensus        56 ~D~~~~g~i~~~EF~~~~~~~~~~--~~~~~~~~~~F~~~D~d~~G~I~~~E~~  107 (179)
T 2f2o_A           56 VDADGNGTIDFPEFLTMMARKMKD--TDSEEEIREAFRVFDKDGNGYISAAELR  107 (179)
T ss_dssp             HCTTCSSSBCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             hccCCCCCCcHHHHHHHHHHHccC--cccHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            577888899999987654333222  2333456778899999999999988874

>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A

Probab=84.06  E-value=0.29  Score=42.26  Aligned_cols=52  Identities=21%  Similarity=0.295  Sum_probs=37.6

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||+...-......+++++   ..-|+..|.|++|.|+.+|+.
T Consensus        79 ~~D~d~~G~i~~~Ef~~~~~~~~~~~~~~~~---~~~f~~~D~d~~G~I~~~E~~  130 (207)
T 2d8n_A           79 SFDSNLDGTLDFKEYVIALHMTTAGKTNQKL---EWAFSLYDVDGNGTISKNEVL  130 (207)
T ss_dssp             HHCTTCCSEEEHHHHHHHHHHHSCSSSSTTH---HHHHHHHCTTCSSEECHHHHH
T ss_pred             HhcCCCCCeEeHHHHHHHHHHHcCCCHHHHH---HHHHHHhcCCCCCeEcHHHHH
Confidence            3577889999999988654333334455544   456888899999999998875

>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5

Probab=84.04  E-value=0.5  Score=40.02  Aligned_cols=55  Identities=25%  Similarity=0.414  Sum_probs=38.6

Q ss_pred             eeecCCCCCcccchHHHHHHHH---hC---CCCHHH---HHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKE---MG---KIAEKD---ILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~---~g---~is~ed---i~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+....-..   .|   ++++++   ...+..-|+++|.|++|.|+.+|+.
T Consensus       107 ~~D~d~~G~I~~~E~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~  170 (193)
T 1bjf_A          107 MYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFI  170 (193)
T ss_dssp             HHCTTCSSCEEHHHHHHHHHHHHTTCCCTTTSCGGGSSHHHHHHHHHHHSCTTCSSEECHHHHH
T ss_pred             hcCCCCCCeECHHHHHHHHHHHHHHhccccCCCcccccHHHHHHHHHHHhCCCCCCeEeHHHHH
Confidence            3578899999999987543221   24   244332   3446677899999999999998875

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A

Probab=83.96  E-value=0.36  Score=37.18  Aligned_cols=50  Identities=24%  Similarity=0.325  Sum_probs=36.8

Q ss_pred             eecCCCCCcccchHHHHHHHHh----CCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEM----GKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~----g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..|+.. .+...    ..++++++..+   |++.|.|++|.|+.+|..
T Consensus        51 ~D~d~~G~i~~~el~~-~l~~~~~~~~~~~~~~~~~~---~~~~D~~~dg~i~~~EF~  104 (109)
T 3fs7_A           51 LDQDKSGFIEEEELQL-FLKNFSSSARVLTSAETKAF---LAAGDTDGDGKIGVEEFQ  104 (109)
T ss_dssp             HSTTCSSSBCHHHHHT-TGGGTCTTSCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             HCCCCCCeEeHHHHHH-HHHHHhcccccCCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            4778999999988754 33444    35678887665   556689999999988764

>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}

Probab=83.95  E-value=0.2  Score=44.61  Aligned_cols=20  Identities=15%  Similarity=0.275  Sum_probs=9.1

Q ss_pred             HhhhcccCCCCCcccccccc
Q 040114          355 CNQFDLIDDSKCGKITVADL  374 (378)
Q Consensus       355 ~~~f~~ld~~~~G~l~~~d~  374 (378)
                      ...|+.+|.|++|.|+.+|+
T Consensus       136 ~~~F~~~D~d~dG~Is~~El  155 (226)
T 2lvv_A          136 TVMFDTMDKDGSLLLELQEF  155 (226)
T ss_dssp             HHHHHHHSCSSCCEECHHHH
T ss_pred             HHHHHHHcCCCCCeEcHHHH
Confidence            33444444444444444443

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A

Probab=83.86  E-value=0.45  Score=39.67  Aligned_cols=49  Identities=27%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             eecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCcccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADL  374 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~  374 (378)
                      .|.+++|.++..|+.. .+...| ..+++++..+   |+..|.|++|.|+.+|.
T Consensus        83 ~D~d~~G~i~~~el~~-~l~~~g~~~~~~~~~~~---~~~~d~~~dg~i~~~eF  132 (172)
T 2znd_A           83 YDRDNSGMIDKNELKQ-ALSGFGYRLSDQFHDIL---IRKFDRQGRGQIAFDDF  132 (172)
T ss_dssp             HCTTCSSEECHHHHHH-HHHHTTCCCCHHHHHHH---HHHHCTTCSSSEEHHHH
T ss_pred             HCCCCCCccCHHHHHH-HHHHcCCCCCHHHHHHH---HHHhCCCCCCcCcHHHH
Confidence            3444555555554432 222332 2344443333   33445555555555543

>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A

Probab=83.79  E-value=0.63  Score=34.63  Aligned_cols=50  Identities=16%  Similarity=0.306  Sum_probs=36.3

Q ss_pred             ee-cCCCC-CcccchHHHHHHHH-----hC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 AD-LDNDG-SISKSEFVIYKLKE-----MG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d-~d~d~-~v~~~e~~~~~L~~-----~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .| .+++| .++..|+... +..     .| ..+++++.++.   +++|.|++|.|+.+|..
T Consensus        18 ~D~~d~~G~~I~~~el~~~-l~~~~~~~~g~~~~~~~~~~~~---~~~D~d~dg~i~~~eF~   75 (93)
T 1k2h_A           18 HSGKEGDKYKLSKKELKDL-LQTELSSFLDVQKDADAVDKIM---KELDENGDGEVDFQEFV   75 (93)
T ss_dssp             HHTTSSCCSSCCHHHHHHH-HHHHTHHHHHCCCCHHHHHHHH---HHHHHCTTSCCCHHHHH
T ss_pred             HcccCCCcCccCHHHHHHH-HHHHHHHHhCCCCCHHHHHHHH---HHhCCCCCCcCcHHHHH
Confidence            46 58899 9999997653 333     44 56888876654   55678999999988764

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A

Probab=83.79  E-value=0.59  Score=38.95  Aligned_cols=42  Identities=21%  Similarity=0.272  Sum_probs=33.4

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCcccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVA  372 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~  372 (378)
                      .|.+++|.++..||+......         ..+...|+.+|.|++|.|+.+
T Consensus       119 ~d~~~dg~i~~~eF~~~~~~~---------~~~~~~F~~~D~d~dG~i~~~  160 (172)
T 2znd_A          119 FDRQGRGQIAFDDFIQGCIVL---------QRLTDIFRRYDTDQDGWIQVS  160 (172)
T ss_dssp             HCTTCSSSEEHHHHHHHHHHH---------HHHHHHHHHHCTTSSSCCCCC
T ss_pred             hCCCCCCcCcHHHHHHHHHHH---------HHHHHHHHHhCCCCCCeEeee
Confidence            567889999999998654322         567788999999999999864

>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}

Probab=83.69  E-value=0.8  Score=39.85  Aligned_cols=52  Identities=25%  Similarity=0.426  Sum_probs=37.2

Q ss_pred             eeecCCCCCcccchHHHHHHHHh------CCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEM------GKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~------g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+... +...      .+.+.++.  +..-|+++|.|++|.|+.+|+.
T Consensus       101 ~~D~d~~G~I~~~E~~~~-l~~~~~~~~~~~~~~~~~--~~~~f~~~D~d~dG~I~~~Ef~  158 (211)
T 2ggz_A          101 LYDADGNGSIDKNELLDM-FMAVQALNGQQTLSPEEF--INLVFHKIDINNDGELTLEEFI  158 (211)
T ss_dssp             HHCTTCSSSBCHHHHHHH-HHHHTTSSCCCSCTHHHH--HHHHHHHHCTTCSSSBCHHHHH
T ss_pred             HhcCCCCCcCcHHHHHHH-HHHHHhhcCCccccHHHH--HHHHHHHhCCCCCCCCcHHHHH
Confidence            357889999999998753 3444      34454432  3455778899999999998875

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=83.56  E-value=0.7  Score=36.85  Aligned_cols=52  Identities=27%  Similarity=0.346  Sum_probs=39.2

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||+......... ...+   .+...|+.+|.|++|.|+.+|+.
T Consensus        50 ~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~---~~~~~F~~~D~d~~G~i~~~el~  102 (142)
T 2bl0_C           50 EADATGNGKIQFPEFLSMMGRRMKQTTSED---ILRQAFRTFDPEGTGYIPKAALQ  102 (142)
T ss_dssp             HHCTTCSSEEEHHHHHHHHHHHHTTCCCHH---HHHHHHHHTCCSSCSCEEHHHHH
T ss_pred             HhCcCCCCeeeHHHHHHHHHHHhcCCChHH---HHHHHHHHHCCCCCCcCcHHHHH
Confidence            3577889999999998765543333 3334   35678999999999999999875

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A

Probab=83.45  E-value=0.37  Score=37.01  Aligned_cols=51  Identities=20%  Similarity=0.302  Sum_probs=37.6

Q ss_pred             eeecCCCCCcccchHHHHHHHHh---C-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEM---G-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~---g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...   | ..+++++..+   |++.|.|++|.|+.+|..
T Consensus        49 ~~D~d~~G~I~~~el~~-~l~~~~~~g~~~~~~~~~~~---~~~~D~~~dg~i~~~eF~  103 (108)
T 2pvb_A           49 VIDQDKSGFIEEDELKL-FLQNFSPSARALTDAETKAF---LADGDKDGDGMIGVDEFA  103 (108)
T ss_dssp             HHCTTCSSSBCHHHHHT-GGGGTCTTSCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             HHCCCCCCcCCHHHHHH-HHHHHhccCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            34778999999998764 34444   3 4788887665   556689999999988764

>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A

Probab=83.36  E-value=0.3  Score=37.56  Aligned_cols=52  Identities=19%  Similarity=0.268  Sum_probs=38.1

Q ss_pred             eeeecCCCCCcccchHHHHHHHHh---C-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEM---G-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~---g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..|+.. .+...   | ..+++++..+   |++.|.|++|.|+.+|..
T Consensus        48 ~~~D~d~~G~I~~~el~~-~l~~~~~~g~~~~~~~~~~~---~~~~D~d~dg~i~~~eF~  103 (108)
T 2kyc_A           48 RILDNDQSGFIEEDELKY-FLQRFESGARVLTASETKTF---LAAADHDGDGKIGAEEFQ  103 (108)
T ss_dssp             SSSCSCCSSCCCGGGTTT-SHHHHSSSCCCCCTTTTHHH---HTTTCCSSSSCCCSSHHH
T ss_pred             HHhCCCCCCeEcHHHHHH-HHHHHhhccCCCCHHHHHHH---HHHhCCCCCCcCCHHHHH
Confidence            456888999999999754 23444   3 4677776554   566789999999998864

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...

Probab=83.19  E-value=0.53  Score=38.32  Aligned_cols=53  Identities=23%  Similarity=0.430  Sum_probs=39.4

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...| .++++++..+.++|. .|.|++|.|+.+|..
T Consensus        92 ~~D~d~~G~I~~~el~~-~l~~~g~~~~~~~~~~~~~~~~-~D~d~dg~i~~~eF~  145 (156)
T 1wdc_C           92 TFDREGQGFISGAELRH-VLTALGERLSDEDVDEIIKLTD-LQEDLEGNVKYEDFV  145 (156)
T ss_dssp             TTCSSSSSEEEHHHHHH-HHHHSSSCCCHHHHHHHHHHHT-CCCCTTSEEEHHHHH
T ss_pred             HhCCCCCCcCcHHHHHH-HHHHcCCCCCHHHHHHHHHHhC-CCCCCCCcEeHHHHH
Confidence            35778899999988765 455665 468888877655421 689999999988764

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=83.18  E-value=0.28  Score=36.93  Aligned_cols=32  Identities=9%  Similarity=0.292  Sum_probs=27.8

Q ss_pred             CCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          344 GKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       344 g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...++++..++.+.|+.+|.|++|.|+.+|+.
T Consensus        19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~   50 (91)
T 2pmy_A           19 ADGDGEELARLRSVFAACDANRSGRLEREEFR   50 (91)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHH
Confidence            44567888999999999999999999999875

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C

Probab=83.08  E-value=0.56  Score=37.87  Aligned_cols=51  Identities=14%  Similarity=0.118  Sum_probs=34.5

Q ss_pred             CCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          325 DNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       325 d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +++|.++..||+...........++....+...|+.+|.|++|.|+.+|+.
T Consensus        60 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~  110 (151)
T 1w7j_B           60 LKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELR  110 (151)
T ss_dssp             HTTCEEEHHHHHHHHHHHCC--------CCHHHHHTTCTTSSSEEEHHHHH
T ss_pred             CCCCcCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            457889999998765554444444455566778999999999999999874

>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A

Probab=82.96  E-value=0.23  Score=36.09  Aligned_cols=51  Identities=22%  Similarity=0.466  Sum_probs=37.1

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC--CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG--KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g--~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...|  ..+++++..+   |+..|.|++|.|+.+|..
T Consensus        16 ~~D~d~~G~i~~~el~~-~l~~~g~~~~~~~~~~~~---~~~~D~~~dg~i~~~eF~   68 (81)
T 1c7v_A           16 VFDANGDGVIDFDEFKF-IMQKVGEEPLTDAEVEEA---MKEADEDGNGVIDIPEFM   68 (81)
T ss_dssp             HHSCSGGGEECHHHHHH-HSSTTTTCCCCHHHHHHH---HHHHCSSGGGSEEHHHHH
T ss_pred             HHCCCCCCcCCHHHHHH-HHHHhCCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            34678889999988764 344555  4577777555   566789999999988764

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=82.84  E-value=0.8  Score=36.59  Aligned_cols=52  Identities=13%  Similarity=0.232  Sum_probs=38.4

Q ss_pred             ecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          323 DLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       323 d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      |.++ |.++..||+.................+...|+.+|.|++|.|+.+|+.
T Consensus        57 d~~~-g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~  108 (149)
T 2mys_C           57 EMNA-AAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELR  108 (149)
T ss_pred             cccC-CcCcHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCceEcHHHHH
Confidence            7778 999999998765444222233344456777999999999999999875

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B

Probab=82.58  E-value=0.68  Score=38.16  Aligned_cols=47  Identities=19%  Similarity=0.213  Sum_probs=33.8

Q ss_pred             CCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          327 DGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       327 d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +|.++..||+............+  ..+...|+.+|.|++|.|+.+|+.
T Consensus        72 dg~i~~~eF~~~~~~~~~~~~~~--~~l~~~F~~~D~d~~G~I~~~el~  118 (166)
T 2mys_B           72 SGPINFTVFLTMFGEKLKGADPE--DVIMGAFKVLDPDGKGSIKKSFLE  118 (166)
T ss_pred             CCCcCHHHHHHHHHHHhccCCcH--HHHHHHHHHhCCCCCcceeHHHHH
Confidence            67888999876554443333222  345677999999999999999875

>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}

Probab=82.50  E-value=0.4  Score=40.53  Aligned_cols=51  Identities=29%  Similarity=0.425  Sum_probs=38.1

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+..........++++   +...|+.+|.|++|.|+.+|+.
T Consensus        96 ~D~d~~g~i~~~ef~~~~~~~~~~~~~~~---~~~~F~~~D~d~~G~I~~~E~~  146 (191)
T 3khe_A           96 VDFDRNGYIEYSEFVTVCMDKQLLLSRER---LLAAFQQFDSDGSGKITNEELG  146 (191)
T ss_dssp             TCTTCSSSEEHHHHHHHHSCHHHHCCHHH---HHHHHHHHCTTCSSEECHHHHH
T ss_pred             hCCCCCCcCCHHHHHHHHHHhcccchHHH---HHHHHHHHCCCCcCcCCHHHHH
Confidence            47788999999999875433333334444   4677889999999999999875

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=82.45  E-value=0.23  Score=49.20  Aligned_cols=52  Identities=29%  Similarity=0.500  Sum_probs=32.6

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.|++|.++..||+..........++   .++...|+.+|.|++|.|+.+|+.
T Consensus       390 ~~D~d~~g~i~~~Ef~~~~~~~~~~~~~---~~~~~~F~~~D~d~dG~I~~~El~  441 (484)
T 3nyv_A          390 AVDFDKNGYIEYSEFVTVAMDRKTLLSR---ERLERAFRMFDSDNSGKISSTELA  441 (484)
T ss_dssp             HHTCCTTSEEEHHHHHHHHHHHHHHHHH---HHHHHHHHHHCTTCCSEEEHHHHH
T ss_pred             HhCCCCCCeEeHHHHHHHHHhccccCcH---HHHHHHHHHHCCCCCCcCCHHHHH
Confidence            4567788888888886543332221122   344566777788888888877764

>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A

Probab=82.24  E-value=0.63  Score=41.39  Aligned_cols=52  Identities=25%  Similarity=0.335  Sum_probs=39.5

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-----CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-----KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-----~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+... +...|     .++++++..+.+.+  .|.|++|.|+.+|..
T Consensus       199 ~~D~d~~G~is~~El~~~-l~~~~~~~~~~~~~~e~~~~~~~~--~D~d~dG~i~~~EF~  255 (263)
T 2f33_A          199 LYDQDGNGYIDENELDAL-LKDLCEKNKQELDINNISTYKKNI--MALSDGGKLYRTDLA  255 (263)
T ss_dssp             HHCCSSSSCEEHHHHHHH-HHHHHHHCTTTCCTTTHHHHHHHH--HTTSBTTEECGGGTH
T ss_pred             HhCCCCCCcccHHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHh--hccCCCCeEcHHHHH
Confidence            357889999999997653 33443     68888888876652  399999999999875

>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A

Probab=82.19  E-value=0.5  Score=37.04  Aligned_cols=48  Identities=17%  Similarity=0.235  Sum_probs=33.7

Q ss_pred             cCCC-CCcccchHHHHHHH-Hh----C-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          324 LDND-GSISKSEFVIYKLK-EM----G-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       324 ~d~d-~~v~~~e~~~~~L~-~~----g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      -|++ |.++..|+.. .+. +.    | +.+++++.++.+   ++|.|++|.|+.+|.+
T Consensus        22 ~dg~~G~Is~~EL~~-~l~~~l~~~lg~~~~~~ev~~~i~---~~D~dgDG~Idf~EF~   76 (101)
T 3nso_A           22 RCGDKYKLCQAELKE-LLQKELATWTPTEFRECDYNKFMS---VLDTNKDCEVDFVEYV   76 (101)
T ss_dssp             TSSCTTEECHHHHHH-HHHHHTTTCCCCTTCHHHHHHHHH---HHHHCCCSCEEHHHHH
T ss_pred             cCCCCCEECHHHHHH-HHHHHhhhhcCCCCCHHHHHHHHH---HhCCCCCCCCcHHHHH
Confidence            4555 8899988754 333 23    3 567888877654   5688999999988754

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A

Probab=82.10  E-value=0.45  Score=36.61  Aligned_cols=51  Identities=25%  Similarity=0.428  Sum_probs=37.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHh---C-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEM---G-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~---g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...   | ..+++++..+   |++.|.|++|.|+.+|..
T Consensus        50 ~~D~d~~G~I~~~el~~-~l~~~~~~g~~~~~~~~~~~---~~~~d~~~dg~i~~~eF~  104 (110)
T 1pva_A           50 AIDADASGFIEEEELKF-VLKSFAADGRDLTDAETKAF---LKAADKDGDGKIGIDEFE  104 (110)
T ss_dssp             HHCTTCSSSBCHHHHHT-GGGGTCTTCCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             HhCCCCCCcCcHHHHHH-HHHHHhhcCCCCCHHHHHHH---HHHhCCCCCCeEcHHHHH
Confidence            34778999999988764 34444   3 4688887665   455688999999988764

>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}

Probab=81.96  E-value=0.74  Score=39.38  Aligned_cols=52  Identities=23%  Similarity=0.460  Sum_probs=37.2

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-------CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-------KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-------~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+... +...+       ..+.++.  +..-|+.+|.|++|.|+.+|+.
T Consensus        96 ~~D~d~~G~I~~~Ef~~~-~~~~~~~~~~~~~~~~~~~--~~~~f~~~D~d~dG~I~~~Ef~  154 (198)
T 2r2i_A           96 LYDVDGNGCIDRGELLNI-IKAIRAINRCNEAMTAEEF--TNMVFDKIDINGDGELSLEEFM  154 (198)
T ss_dssp             HHCTTCSSCEEHHHHHHH-HHHTTGGGGSSSCCCHHHH--HHHHHHHHCTTCSSEECHHHHH
T ss_pred             HhcCCCCCcCcHHHHHHH-HHHHHhhcCCCchhhHHHH--HHHHHHHhCCCCCCcCcHHHHH
Confidence            357889999999998753 34443       4454442  3445788899999999998875

>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...

Probab=81.77  E-value=1.1  Score=33.79  Aligned_cols=47  Identities=15%  Similarity=0.313  Sum_probs=32.6

Q ss_pred             CCCC---CcccchHHHHHHHH-----hC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          325 DNDG---SISKSEFVIYKLKE-----MG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       325 d~d~---~v~~~e~~~~~L~~-----~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ++||   .++..|+.. .+..     +| ..+++++.++.   ++.|.|++|.|+.+|..
T Consensus        20 ~~dG~~g~Is~~EL~~-~l~~~~~~~lg~~~~~~~v~~~~---~~~D~d~dG~I~f~EF~   75 (92)
T 3rm1_A           20 GREGDKHKLKKSELKE-LINNELSHFLEEIKEQEVVDKVM---ETLDSNGDGECDFQEFM   75 (92)
T ss_dssp             TSSSSTTSBCHHHHHH-HHHHHCTTTSCCCCSHHHHHHHH---HHHCTTSSSSBCHHHHH
T ss_pred             cCCCCcCeECHHHHHH-HHHHHhhhhccCcccHHHHHHHH---HHHcCCCCCCCcHHHHH
Confidence            4555   898888654 3444     44 45777776664   55689999999988753

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=81.75  E-value=0.48  Score=46.95  Aligned_cols=33  Identities=27%  Similarity=0.428  Sum_probs=29.0

Q ss_pred             hCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          343 MGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       343 ~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      -..+++|++.++.+.|+.+|.|++|.|+.+||.
T Consensus       293 ~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk  325 (440)
T 3u0k_A          293 RDQLTEEQIAEFKEAFSLFDKDGDGTITTKELG  325 (440)
T ss_dssp             CBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHH
Confidence            456789999999999999999999999998874

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A

Probab=81.61  E-value=0.63  Score=37.46  Aligned_cols=49  Identities=20%  Similarity=0.278  Sum_probs=38.5

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...| .++++++..+.+++     |++|.|+.+|..
T Consensus        92 ~~D~d~~G~I~~~el~~-~l~~~g~~~~~~~~~~~~~~~-----d~dg~i~~~eF~  141 (146)
T 2qac_A           92 HFDNNCTGYLTKSQMKN-ILTTWGDALTDQEAIDALNAF-----SSEDNIDYKLFC  141 (146)
T ss_dssp             TTCTTCSSEEEHHHHHH-HHHHSSSCCCHHHHHHHHHHH-----CSSSEEEHHHHH
T ss_pred             HhCCCCCCCCCHHHHHH-HHHHhCCCCCHHHHHHHHHHc-----CCCCcCcHHHHH
Confidence            35778899999988764 455566 47899999888887     889999988764

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8

Probab=81.57  E-value=0.81  Score=39.10  Aligned_cols=43  Identities=21%  Similarity=0.396  Sum_probs=33.0

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITV  371 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~  371 (378)
                      ..+|.++||.++..||+.....         ...+.+.|+.+|.|++|.|+.
T Consensus       136 ~~~D~d~dg~i~~~eF~~~~~~---------~~~~~~~F~~~D~d~dG~i~~  178 (191)
T 1y1x_A          136 RKFDRQRRGSLGFDDYVELSIF---------VCRVRNVFAFYDRERTGQVTF  178 (191)
T ss_dssp             HHHCTTCSSSBCHHHHHHHHHH---------HHHHHHHHHHHCTTCCSEEEE
T ss_pred             HHhCCCCCCeEeHHHHHHHHHH---------HHHHHHHHHHhCcCCCceEEe
Confidence            3467788999999999875432         256678899999999999553

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8

Probab=81.55  E-value=1.1  Score=36.97  Aligned_cols=51  Identities=18%  Similarity=0.285  Sum_probs=38.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC------CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG------KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g------~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+..+|      ..+++++..+   |+..|.|++|.|+.+|..
T Consensus         9 ~~D~d~~G~i~~~el~~-~l~~lg~~~~~~~~~~~~~~~l---~~~~D~~~~g~i~~~eF~   65 (167)
T 1gjy_A            9 ASVAGQDGQIDADELQR-CLTQSGIAGGYKPFNLETCRLM---VSMLDRDMSGTMGFNEFK   65 (167)
T ss_dssp             HHHCCTTSCBCHHHHHH-HHHHHTCSTTSCCCCHHHHHHH---HHHHCTTCCSCBCHHHHH
T ss_pred             HHHcCCCCcCCHHHHHH-HHHhhcccCCCCCcCHHHHHHH---HHHHCCCCCCcCCHHHHH
Confidence            35788999999999764 455666      4677777655   556689999999988764

>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A

Probab=81.20  E-value=0.98  Score=37.21  Aligned_cols=51  Identities=14%  Similarity=0.305  Sum_probs=37.6

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .|...| ..+++++.++   |++.|.|++|.|+.+|..
T Consensus        56 ~~D~d~dG~I~~~El~~-~l~~~g~~~~~~~~~~l---~~~~D~d~dg~I~~~eF~  107 (147)
T 1wy9_A           56 EFDLNGNGDIDIMSLKR-MLEKLGVPKTHLELKRL---IREVSSGSEETFSYSDFL  107 (147)
T ss_dssp             TSCCCTTSSEEHHHHHH-HHHHTTCCCCHHHHHHH---HHHHCSSCTTEECHHHHH
T ss_pred             HHCCCCCCcCcHHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            45778899999988775 455666 4677777665   455688999999987754

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A

Probab=80.98  E-value=0.72  Score=38.11  Aligned_cols=50  Identities=10%  Similarity=0.032  Sum_probs=37.1

Q ss_pred             CCCCcccchHHHHHHHHhCCC--CHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          326 NDGSISKSEFVIYKLKEMGKI--AEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       326 ~d~~v~~~e~~~~~L~~~g~i--s~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ++|.++..||+..........  .......+...|+.+|.|++|.|+.+|+.
T Consensus        66 ~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~  117 (174)
T 1q80_A           66 GGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYG  117 (174)
T ss_dssp             TTSCEEHHHHHHHHHHHTTSTTCHHHHHTHHHHHHHHHCTTSSSSBCHHHHH
T ss_pred             CCCeEcHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHhCCCCCCcccHHHHH
Confidence            889999999987544443311  12234667889999999999999999874

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}

Probab=80.78  E-value=1  Score=38.36  Aligned_cols=52  Identities=17%  Similarity=0.307  Sum_probs=38.2

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..|+... |...| ..+++++..+   |+..|.|++|.|+.+|..
T Consensus        44 ~~~D~d~~G~i~~~e~~~~-l~~~~~~~~~~~~~~~---~~~~D~d~dg~i~~~ef~   96 (204)
T 3e3r_A           44 RQLDRDGSRSLDADEFRQG-LAKLGLVLDQAEAEGV---CRKWDRNGSGTLDLEEFL   96 (204)
T ss_dssp             HHHCTTCCSSBCHHHHHHH-HHTTTCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             HHHccCCCCCcCHHHHHHH-HHHcCCCCCHHHHHHH---HHHhccCCCCcCcHHHHH
Confidence            3467889999999998753 44444 4567776555   566689999999988864

>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A

Probab=80.78  E-value=0.38  Score=37.69  Aligned_cols=50  Identities=24%  Similarity=0.322  Sum_probs=36.2

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCC-CHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKI-AEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~i-s~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..|+.. .+...|.. +++++   ..-|+..|.|++|.|+.+|+.
T Consensus         9 ~D~~~~g~i~~~e~~~-~l~~~~~~~~~~~~---~~~~~~~D~~~~g~i~~~ef~   59 (134)
T 1jfj_A            9 IDVNGDGAVSYEEVKA-FVSKKRAIKNEQLL---QLIFKSIDADGNGEIDQNEFA   59 (134)
T ss_dssp             HCTTCSSEEEHHHHHH-HHHTTCCSSHHHHH---HHHHHHHCSSCCSEEEHHHHH
T ss_pred             HCCCCCCcCCHHHHHH-HHHHcCCCCCHHHH---HHHHHHHcCCCCCeEcHHHHH
Confidence            5778899999999875 34455533 34444   455777899999999998864

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A

Probab=80.72  E-value=0.73  Score=37.06  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=19.7

Q ss_pred             HHHhhhcccCCCCCccccccccc
Q 040114          353 QICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       353 ~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .+...|+.+|.|++|.|+.+|+.
T Consensus        85 ~l~~~F~~~D~d~~G~I~~~el~  107 (146)
T 2qac_A           85 ELIKMFAHFDNNCTGYLTKSQMK  107 (146)
T ss_dssp             HHHHHHHTTCTTCSSEEEHHHHH
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHH
Confidence            45677999999999999999875

>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding protein; NMR {Homo sapiens} SCOP: a.39.1.7

Probab=80.63  E-value=0.88  Score=34.96  Aligned_cols=54  Identities=13%  Similarity=0.265  Sum_probs=36.3

Q ss_pred             eeecCCCCCcccchHHHHHHHH-----hCCC-CHH--------HHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKE-----MGKI-AEK--------DILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~-----~g~i-s~e--------di~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.++||.++..|+... +..     .|.. +++        ....+..-|+++|.|++|.|+.+|..
T Consensus        28 ~~D~d~dG~I~~~El~~~-l~~~~~~~~g~~~~~~~~~~~~e~~~~~~~~~~~~~D~d~dG~Is~~EF~   95 (103)
T 1snl_A           28 LHDINSDGVLDEQELEAL-FTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFL   95 (103)
T ss_dssp             HHCSSCCSEEEHHHHHHH-HHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHH
T ss_pred             HHcCCCCCcccHHHHHHH-HHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHH
Confidence            457899999999997643 332     2432 211        11235566889999999999998764

>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C

Probab=80.58  E-value=0.86  Score=38.16  Aligned_cols=53  Identities=34%  Similarity=0.432  Sum_probs=39.9

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .|..+| +++++++..+.++++ .+.|++|.|+-+|.+
T Consensus        93 ~fD~d~~G~I~~~el~~-~l~~~g~~ls~~e~~~l~~~~D-~~~d~dG~I~~~EF~  146 (159)
T 3i5g_C           93 TFDREGQGLISSAEIRN-VLKMLGERITEDQCNDIFTFCD-IREDIDGNIKYEDLM  146 (159)
T ss_dssp             HHCTTSSSEECHHHHHH-HHHHSSSCCCHHHHHHHHHHTT-CCCCSSCCEEHHHHH
T ss_pred             HHhcCCCCcCcHHHHHH-HHHHhCCCCCHHHHHHHHHHhC-cCCCCCCeEeHHHHH
Confidence            45788999999988754 456665 568999988877664 345899999988764

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=80.56  E-value=0.44  Score=38.08  Aligned_cols=50  Identities=20%  Similarity=0.243  Sum_probs=35.3

Q ss_pred             CCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          325 DNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       325 d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +++|.++..||+....... .........+...|+.+|.|++|.|+.+|+.
T Consensus        50 ~~~g~i~~~eF~~~~~~~~-~~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~   99 (145)
T 2bl0_B           50 LNAKEFDLATFKTVYRKPI-KTPTEQSKEMLDAFRALDKEGNGTIQEAELR   99 (145)
T ss_dssp             HTSSEECHHHHHHHHTSCC-CCGGGGHHHHHHHHHHHCSSSSSEEEHHHHH
T ss_pred             cCCCeEcHHHHHHHHHHHh-hcCcccHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence            6788899988876432111 0223344566788999999999999998875

>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A

Probab=80.46  E-value=0.9  Score=37.84  Aligned_cols=49  Identities=14%  Similarity=0.177  Sum_probs=36.6

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..| ++||.|+..|... .|...| ++++++.++.   +..|.|++|.|+.+|..
T Consensus        59 ~fD-d~dG~Is~~El~~-~l~~~g-l~~~el~~I~---~~~D~d~dG~Ld~~EF~  107 (139)
T 2jq6_A           59 TLS-PVNGKITGANAKK-EMVKSK-LPNTVLGKIW---KLADVDKDGLLDDEEFA  107 (139)
T ss_dssp             HSC-CSSSEEEHHHHHH-HHHHTT-CCHHHHHHHH---HHHCSSCCSEEEHHHHH
T ss_pred             HhC-CCCCeECHHHHHH-HHHHhC-cCHHHHHHHH---HHhCCCCCCcCcHHHHH
Confidence            347 8899999888654 344555 8888876664   56799999999988754

>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A

Probab=80.24  E-value=0.45  Score=47.46  Aligned_cols=53  Identities=26%  Similarity=0.417  Sum_probs=31.4

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .+|.+++|.++..||+..........  .....+...|+.+|.|++|.|+.+|+.
T Consensus       356 ~~D~DgdG~IsfeEFl~ll~~~~~~~--~~~e~l~~aFk~fD~D~dG~Is~eELr  408 (450)
T 3sg6_A          356 EVDADGNGTIDFPEFLTMMARKMKDT--DSEEEIREAFRVFDKDGNGYISAAELR  408 (450)
T ss_dssp             TTCTTSSSSEEHHHHHHHHHC--------CHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             HhccCCCCcccHHHHHHHHHhhcccc--chhhHHHHHHHHhCCCCCCeEeHHHHH
Confidence            35667778888888875433222211  112234566777888888888877764

>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A

Probab=80.20  E-value=1.4  Score=36.59  Aligned_cols=39  Identities=21%  Similarity=0.449  Sum_probs=23.6

Q ss_pred             CCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCcccccc
Q 040114          325 DNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVA  372 (378)
Q Consensus       325 d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~  372 (378)
                      +++|.++..||+.....         ...+.+.|+.+|.|++|.|+.+
T Consensus       124 d~dg~i~~~eF~~~~~~---------~~~~~~~F~~~D~d~~G~i~~~  162 (173)
T 1alv_A          124 DEGGNMDFDNFISCLVR---------LDAMFRAFKSLDKDGTGQIQVN  162 (173)
T ss_dssp             CSSSCBCHHHHHHHHHH---------HHHHHHHHHHHSSSCCSEEEEE
T ss_pred             CCCCcCcHHHHHHHHHH---------HHHHHHHHHHhCCCCCCeecHh
Confidence            55566666666543211         1345666777788888887765

>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A

Probab=80.09  E-value=0.82  Score=36.57  Aligned_cols=48  Identities=17%  Similarity=0.340  Sum_probs=33.9

Q ss_pred             cCCCC-CcccchHHHHHHHH-----hC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          324 LDNDG-SISKSEFVIYKLKE-----MG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       324 ~d~d~-~v~~~e~~~~~L~~-----~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .+++| .++..|+... |..     +| +.+++++.++.   +++|.|++|.|+.+|.+
T Consensus        34 ~dgdGG~Is~~EL~~~-l~~~l~~~lg~~~t~~ev~~li---~~~D~dgdG~Idf~EF~   88 (113)
T 2lnk_A           34 KEGDKFKLNKSELKEL-LTRELPSFLGKRTDEAAFQKLM---SNLDSNRDNEVDFQEYC   88 (113)
T ss_dssp             TTSCTTCBCHHHHHHH-HHHHCGGGGTTCCCTTHHHHHH---HHHCSSSSSCBCHHHHH
T ss_pred             cCCCCCEECHHHHHHH-HHHHcchhcCCCCCHHHHHHHH---HHhCCCCCCcEeHHHHH
Confidence            56776 8998886543 332     33 45777877664   56789999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	378
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	6e-13
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	4e-11
d1r3jc_	103	f.14.1.1 (C:) Potassium channel protein {Streptomy	8e-11
d1r3jc_	103	f.14.1.1 (C:) Potassium channel protein {Streptomy	1e-07
d1xl4a2	116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	6e-07
d1xl4a2	116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	5e-06
d1p7ba2	116	f.14.1.1 (A:36-151) Inward rectifier potassium cha	1e-06
d1p7ba2	116	f.14.1.1 (A:36-151) Inward rectifier potassium cha	4e-05

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 61.6 bits (150), Expect = 6e-13
 Identities = 24/74 (32%), Positives = 38/74 (51%)

Query: 223 LGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVS 282
           L +V+  +  GT   HF+E  +W  S Y +  ++ TVGYGDY+ +T  G  F +  +++ 
Sbjct: 6   LLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLG 65

Query: 283 TLAVARAFLYLTEL 296
               A A   L E 
Sbjct: 66  IGTFAVAVERLLEF 79

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 56.3 bits (136), Expect = 4e-11
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 10/83 (12%)

Query: 113 FIGLVLYILAGIVIY--LTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
            + ++  I+ G   +  +   ++          +LY+  VT+ T+GYGD  P T     F
Sbjct: 6   LLLVLAVIIYGTAGFHFIEGESW--------TVSLYWTFVTIATVGYGDYSPSTPLGMYF 57

Query: 171 TCVFILIGFGFVDILLNGLVTYI 193
           T   I++G G   + +  L+ ++
Sbjct: 58  TVTLIVLGIGTFAVAVERLLEFL 80

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 56.5 bits (136), Expect = 8e-11
 Identities = 18/86 (20%), Positives = 37/86 (43%)

Query: 113 FIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTC 172
            + +++ +    +  L      G        AL++ V T  T+GYGD+ P T + +    
Sbjct: 13  VLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAV 72

Query: 173 VFILIGFGFVDILLNGLVTYICDRQE 198
           V ++ G     ++   L T+   R++
Sbjct: 73  VVMVAGITSFGLVTAALATWFVGREQ 98

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 221 LALGVVIGCLAIGTVTVHFLEDM-------NWVDSFYLSVTSVTTVGYGDYAFTTLTGRC 273
            A  +++  L  G+      E          +  + + SV + TTVGYGD    TL GRC
Sbjct: 10  AATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRC 69

Query: 274 FAIIWLLVSTLAVARAFLYLTELRIEKRNRR 304
            A++ ++    +       L    + +   R
Sbjct: 70  VAVVVMVAGITSFGLVTAALATWFVGREQER 100

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 1/91 (1%)

Query: 104 STPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKP-VDALYFIVVTLCTIGYGDIVP 162
           S P+ +       ++      + YL  G+    A      DA +F V T+ TIGYG ++P
Sbjct: 23  SWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIP 82

Query: 163 DTTFTKLFTCVFILIGFGFVDILLNGLVTYI 193
                     +  L G   + +  + +    
Sbjct: 83  IGPLANTLVTLEALCGMLGLAVAASLIYARF 113

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 212 RMRIRIKVCLALGVVIGCLAIGTVTVHFLED-------MNWVDSFYLSVTSVTTVGYGDY 264
            +   + + L  G+ +   A+  +      D        ++ D+F+ SV ++ T+GYG  
Sbjct: 21  TVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL 80

Query: 265 AFTTLTGRCFAIIWLLVSTLAVA 287
                       +  L   L +A
Sbjct: 81  IPIGPLANTLVTLEALCGMLGLA 103

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 19/87 (21%), Positives = 35/87 (40%)

Query: 107 LIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTF 166
                A + +V   L  ++  L +     ++    V A +F V TL T+GYGD+ P T +
Sbjct: 28  FFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVY 87

Query: 167 TKLFTCVFILIGFGFVDILLNGLVTYI 193
                 + I +G   + +    +    
Sbjct: 88  AHAIATLEIFVGMSGIALSTGLVFARF 114

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 2/89 (2%)

Query: 201 FLSTMDENRERRMRIRIKVCLALGVVIGCLAI--GTVTVHFLEDMNWVDSFYLSVTSVTT 258
                 +         +     +   +  L    G   +       +V +F+ SV ++ T
Sbjct: 16  LYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLAT 75

Query: 259 VGYGDYAFTTLTGRCFAIIWLLVSTLAVA 287
           VGYGD    T+     A + + V    +A
Sbjct: 76  VGYGDMHPQTVYAHAIATLEIFVGMSGIA 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	378
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.64
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.59
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.51
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.47
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.41
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.36
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.24
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.2
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	98.57
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	97.65
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	95.46
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	94.74
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	94.58
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	94.29
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	93.2
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	93.07
d2hf5a1	33	Troponin C {Human (Homo sapiens), cardiac isoform	93.05
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	93.03
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	92.74
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	92.5
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	92.33
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	92.09
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	92.08
d1jc2a_	75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	92.03
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	91.13
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	91.02
d1qv0a_	189	Calcium-regulated photoprotein {Hydrozoa (Obelia l	90.95
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	90.85
d1wdcb_	142	Myosin Essential Chain {Bay scallop (Aequipecten i	90.65
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	90.5
d1s6ja_	87	Calcium-dependent protein kinase sk5 CLD {Soybean	90.21
d1s6ja_	87	Calcium-dependent protein kinase sk5 CLD {Soybean	90.18
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	89.9
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	89.86
d1ggwa_	140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	89.66
d1topa_	162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	89.31
d2mysc_	145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	89.23
d2scpa_	174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	88.87
d2pvba_	107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	88.74
d1snla_	99	Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax	88.61
d1k94a_	165	Grancalcin {Human (Homo sapiens) [TaxId: 9606]}	88.57
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	88.49
d1nyaa_	176	Calerythrin {Saccharopolyspora erythraea [TaxId: 1	88.25
d1uhka1	187	Calcium-regulated photoprotein {Jellyfish (Aequore	88.18
d1qxpa2	188	Calpain large subunit, C-terminal domain (domain I	88.17
d1rwya_	109	Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	88.01
d1xo5a_	180	Calcium- and integrin-binding protein, CIB {Human	87.81
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	87.68
d1df0a1	186	Calpain large subunit, C-terminal domain (domain I	87.42
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	87.38
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	87.18
d2zfda1	183	Calcineurin B-like protein 2 {Thale cress (Arabido	87.17
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	86.78
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	86.69
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	86.67
d1xo5a_	180	Calcium- and integrin-binding protein, CIB {Human	86.59
d1wdcc_	152	Myosin Regulatory Chain {Bay scallop (Aequipecten	86.28
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	86.16
d1fpwa_	190	Frequenin (neuronal calcium sensor 1) {Baker's yea	85.64
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	85.62
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	85.58
d1m45a_	146	Myosin Light Chain Mlc1p {Baker's yeast (Saccharom	85.54
d2zfda1	183	Calcineurin B-like protein 2 {Thale cress (Arabido	84.9
d2obha1	141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	84.66
d1zfsa1	93	Calcyclin (S100) {Rat (Rattus norvegicus), s100a1	83.58
d1rroa_	108	Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116	83.57
d1g8ia_	187	Frequenin (neuronal calcium sensor 1) {Human (Homo	83.55
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	83.45
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	83.28
d2jxca1	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	82.69
d2pvba_	107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	82.67
d1jbaa_	189	Guanylate cyclase activating protein 2, GCAP-2 {Co	81.93
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	81.58
d1bjfa_	181	Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}	80.91
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	80.74
d1a4pa_	92	Calcyclin (S100) {Human (Homo sapiens), P11 s100a1	80.52

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.64  E-value=9.7e-18  Score=134.11  Aligned_cols=94  Identities=19%  Similarity=0.328  Sum_probs=76.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhh
Q 040114          105 TPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDI  184 (378)
Q Consensus       105 ~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~  184 (378)
                      +|......++++++.++.+.++|+.|+..++.+..++.||+||+++|+|||||||++|.|+.||++++++++.|+.++++
T Consensus         5 ~r~~~~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~   84 (103)
T d1r3jc_           5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGL   84 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHH
Confidence            45544445555555566666666777766666677899999999999999999999999999999999999999999999


Q ss_pred             hhcchhhhhhhhHH
Q 040114          185 LLNGLVTYICDRQE  198 (378)
Q Consensus       185 ~~~~~~~~l~~~~~  198 (378)
                      .++.+.+.+.++++
T Consensus        85 ~~~~i~~~~~~~~~   98 (103)
T d1r3jc_          85 VTAALATWFVGREQ   98 (103)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999887776543

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.59  E-value=1.2e-16  Score=127.66  Aligned_cols=82  Identities=24%  Similarity=0.378  Sum_probs=68.8

Q ss_pred             HHHHHHhhhhhhcceeecccc-------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 040114          222 ALGVVIGCLAIGTVTVHFLED-------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLT  294 (378)
Q Consensus       222 ~~~~~i~~~~~g~~~~~~~e~-------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~  294 (378)
                      ++.++++++++++.+++..|+       .++.||+||+++|+|||||||++|.|..||++++++++.|+.+++..++.++
T Consensus        11 ~~~~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~   90 (103)
T d1r3jc_          11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALA   90 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455667777777764       3688999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 040114          295 ELRIEKRNR  303 (378)
Q Consensus       295 ~~~~~~~~r  303 (378)
                      +...+++++
T Consensus        91 ~~~~~~~~~   99 (103)
T d1r3jc_          91 TWFVGREQE   99 (103)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887776544

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.51  E-value=4.4e-17  Score=124.27  Aligned_cols=70  Identities=33%  Similarity=0.581  Sum_probs=64.5

Q ss_pred             HHhhhhhhcceeecccccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          226 VIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTE  295 (378)
Q Consensus       226 ~i~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~  295 (378)
                      ++.++.+|+..++..|+|++.||+||+++|+||+||||++|.|..||++++++++.|+.+++..++.+++
T Consensus         9 ~~~~~~~g~~~~~~~e~~s~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~~   78 (80)
T d1lnqa2           9 VLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE   78 (80)
T ss_dssp             TTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455778999999999999999999999999999999999999999999999999999999988887654

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.47  E-value=3.2e-16  Score=119.40  Aligned_cols=71  Identities=27%  Similarity=0.491  Sum_probs=60.8

Q ss_pred             HHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhh
Q 040114          116 LVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTY  192 (378)
Q Consensus       116 l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~  192 (378)
                      ++.+++.|+..|      ...|+|++.||+||+++|+||+||||++|.|+.||++++++++.|++++++.++.+.+.
T Consensus         9 ~~~~~~~g~~~~------~~~e~~s~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~~~   79 (80)
T d1lnqa2           9 VLAVIIYGTAGF------HFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEF   79 (80)
T ss_dssp             TTTSHHHHTTTT------TTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTT
T ss_pred             HHHHHHHHHHHH------HHHhCCCHHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334555666666      33467999999999999999999999999999999999999999999999998887654

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.41  E-value=1.5e-14  Score=117.68  Aligned_cols=89  Identities=22%  Similarity=0.346  Sum_probs=67.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhhh-hcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhh
Q 040114          104 STPLIVQQAFIGLVLYILAGIVIY-LTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFV  182 (378)
Q Consensus       104 ~~~~~~~~~~~~l~~~l~~g~~~~-~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~  182 (378)
                      +++..+......+++.....+++| +.++...+.+.++|.||+||+++|+|||||||++|.++.||+++++.+++|+.++
T Consensus        24 ~~~~~l~~~~~~~~~~~~~fa~~y~~~~~~~~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~  103 (116)
T d1p7ba2          24 SWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGI  103 (116)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHH
Confidence            444544444333333333434444 5555556677899999999999999999999999999999999999999999999


Q ss_pred             hhhhcchhhh
Q 040114          183 DILLNGLVTY  192 (378)
Q Consensus       183 ~~~~~~~~~~  192 (378)
                      ++.++.+...
T Consensus       104 a~~~g~i~~~  113 (116)
T d1p7ba2         104 ALSTGLVFAR  113 (116)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887766543

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.36  E-value=3.3e-14  Score=115.53  Aligned_cols=89  Identities=18%  Similarity=0.211  Sum_probs=66.4

Q ss_pred             ChHHHHHHHHHHHH-HHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhh
Q 040114          104 STPLIVQQAFIGLV-LYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFV  182 (378)
Q Consensus       104 ~~~~~~~~~~~~l~-~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~  182 (378)
                      +++..+.......+ .++.++.+.+..++...+.+.++|.||+||+++|+|||||||++|.++.||+++++.++.|+.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~fa~~y~~~~~~~~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~  102 (116)
T d1xl4a2          23 SWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGL  102 (116)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHH
Confidence            34444433333333 33444444445555556667789999999999999999999999999999999999999999999


Q ss_pred             hhhhcchhhh
Q 040114          183 DILLNGLVTY  192 (378)
Q Consensus       183 ~~~~~~~~~~  192 (378)
                      ++.++.+...
T Consensus       103 a~~~g~i~~~  112 (116)
T d1xl4a2         103 AVAASLIYAR  112 (116)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887766543

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.24  E-value=7.6e-13  Score=107.35  Aligned_cols=54  Identities=26%  Similarity=0.402  Sum_probs=49.5

Q ss_pred             ccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          242 DMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTE  295 (378)
Q Consensus       242 ~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~  295 (378)
                      .++|.||+||+++|+|||||||++|.+..||+++++.+++|+.+++..++.+..
T Consensus        59 ~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~~~g~i~~  112 (116)
T d1p7ba2          59 PPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFA  112 (116)
T ss_dssp             SSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999999999999888776653

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.20  E-value=8.1e-13  Score=107.15  Aligned_cols=53  Identities=23%  Similarity=0.353  Sum_probs=49.2

Q ss_pred             cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040114          243 MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTE  295 (378)
Q Consensus       243 ~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~  295 (378)
                      ++|.||+||+++|+|||||||++|.+..||++++++++.|+.+++..++.+..
T Consensus        59 ~~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~~~g~i~~  111 (116)
T d1xl4a2          59 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYA  111 (116)
T ss_dssp             TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999988876653

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.57  E-value=4.4e-09  Score=73.32  Aligned_cols=53  Identities=15%  Similarity=0.204  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeec
Q 040114          105 TPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGY  157 (378)
Q Consensus       105 ~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGy  157 (378)
                      +|.+....++++++.++++.++|+.|++.++.+.-++++++||+++|+|||||
T Consensus         5 ~R~~~~~~~~~~i~i~~~s~~~y~~E~~~~~~~f~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1           5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhhhheeeeecccC
Confidence            46667777777778888899999999877777778999999999999999998

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.65  E-value=5.5e-07  Score=62.46  Aligned_cols=40  Identities=23%  Similarity=0.391  Sum_probs=27.5

Q ss_pred             HHHHHHhhhhhhcceeecccc-------cccccceeEEEEEEecccc
Q 040114          222 ALGVVIGCLAIGTVTVHFLED-------MNWVDSFYLSVTSVTTVGY  261 (378)
Q Consensus       222 ~~~~~i~~~~~g~~~~~~~e~-------~~~~da~Y~~~~T~tTVGy  261 (378)
                      +..++.+++.+++.+.+..|+       -+..||+||+++|+|||||
T Consensus        11 ~~~~~~i~i~~~s~~~y~~E~~~~~~~f~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1          11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhhhheeeeecccC
Confidence            333334444455555566663       2678899999999999998

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=95.46  E-value=0.0027  Score=46.20  Aligned_cols=51  Identities=27%  Similarity=0.427  Sum_probs=41.6

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .|..+|..+++++.++   |++.|.|++|.|+.+|..
T Consensus        14 ~~D~d~~G~I~~~El~~-~l~~lg~~~~~ei~~~---~~~~D~d~~G~I~~~EF~   64 (81)
T d2opoa1          14 RFDTNGDGKISSSELGD-ALKTLGSVTPDEVRRM---MAEIDTDGDGFISFDEFT   64 (81)
T ss_dssp             HHCTTCSSEEEHHHHHH-HHHTTTTCCHHHHHHH---HHHHCTTCSSEECHHHHH
T ss_pred             HHCCCCCCCCcHHHHHH-HHHHhhcCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            45889999999999865 4678898999887555   677899999999988764

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.74  E-value=0.0051  Score=44.07  Aligned_cols=31  Identities=26%  Similarity=0.517  Sum_probs=28.9

Q ss_pred             CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          345 KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       345 ~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ++|++++.++.+.|+.+|.|++|.|+..||.
T Consensus         3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~el~   33 (77)
T d1f54a_           3 NLTEEQIAEFKEAFALFDKDNNGSISSSELA   33 (77)
T ss_dssp             CCCHHHHHHHHHHHHHTCTTCSSEEEHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCeEChHHHH
Confidence            5789999999999999999999999999885

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.58  E-value=0.0091  Score=41.51  Aligned_cols=51  Identities=24%  Similarity=0.412  Sum_probs=38.9

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .++.+|. ++++++.++   |+..|.|++|.|+.+|..
T Consensus         9 ~~D~d~~G~I~~~El~~-~l~~lg~~~~~~~i~~~---~~~~D~d~dg~I~~~EF~   60 (67)
T d1tiza_           9 KFDKNKDGKLSLDEFRE-VALAFSPYFTQEDIVKF---FEEIDVDGNGELNADEFT   60 (67)
T ss_dssp             HHCTTSSSCEEHHHHHH-HHHHTCTTSCHHHHHHH---HHHHCCSSSSEECHHHHH
T ss_pred             HHCCCCcCcCcHHHHHH-HHHHhccccchHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            45788999999999875 4566654 467776555   666689999999998864

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=94.29  E-value=0.0095  Score=42.17  Aligned_cols=30  Identities=30%  Similarity=0.472  Sum_probs=28.3

Q ss_pred             CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          346 IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       346 is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +|+|++.++.+.|+.+|.|++|.|+.+||.
T Consensus         2 Ls~eei~el~~~F~~~D~d~~G~I~~~el~   31 (73)
T d2pq3a1           2 LTEEQIAEFKEAFSLFDKDGDGTITTKELG   31 (73)
T ss_dssp             CCHHHHHHHHHHHHHTCTTSSSEEEGGGHH
T ss_pred             cCHHHHHHHHHHHHHHcCCCCceEeHHHHH
Confidence            689999999999999999999999999975

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.20  E-value=0.029  Score=38.04  Aligned_cols=51  Identities=16%  Similarity=0.390  Sum_probs=39.7

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+... |..+| +.+++++..+   |+..|.|++|.++.+|.+
T Consensus         9 ~fD~~~~G~I~~~el~~~-l~~~g~~~~~~ei~~l---~~~~D~d~dg~I~~~eFl   60 (61)
T d2fcea1           9 VFDKESTGKVSVGDLRYM-LTGLGEKLTDAEVDEL---LKGVEVDSNGEIDYKKFI   60 (61)
T ss_dssp             HHCTTCCSCEEHHHHHHH-HHHTTCCCCHHHHHHH---HTTCCCCTTSEECHHHHH
T ss_pred             HHCCCCCCeEeHHHHHHH-HHHcCCCCCHHHHHHH---HHHcCCCCCCcEeHHHhc
Confidence            457889999999998654 55665 4688888766   567899999999988764

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=93.07  E-value=0.026  Score=40.13  Aligned_cols=51  Identities=22%  Similarity=0.386  Sum_probs=39.0

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .|..+| .++++++.++   |++.|.|++|.|+.+|..
T Consensus        17 ~~D~d~~G~I~~~el~~-~l~~~g~~~~~~e~~~~---~~~~D~d~~G~I~~~EF~   68 (77)
T d1oqpa_          17 LFDDDNSGTITIKDLRR-VAKELGENLTEEELQEM---IAEADRNDDNEIDEDEFI   68 (77)
T ss_dssp             HHCTTCSSSEEHHHHHH-HHHHHTCCCCHHHHHHH---HHHHCCSSSSEECHHHHH
T ss_pred             HHcCCCCCEechHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            45788999999999765 455554 4678877665   567899999999988754

>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=93.05  E-value=0.013  Score=35.24  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=20.2

Q ss_pred             HHHhhhcccCCCCCccccccccc
Q 040114          353 QICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       353 ~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ++.+.|+..|.|++|.|+.+||.
T Consensus         4 el~eAF~~FDkDg~G~Is~~EL~   26 (33)
T d2hf5a1           4 EIREAFRVFDKDGNGYISAAELR   26 (33)
T ss_dssp             HHHHHHHHHSSSCCSCBCHHHHH
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHH
Confidence            45778999999999999999885

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.041  Score=39.50  Aligned_cols=53  Identities=13%  Similarity=0.257  Sum_probs=41.2

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..|+....-...-.++++++..+   |+.+|.|++|.|+-.|.+
T Consensus        27 ~~~D~~~~G~i~~~ef~~~l~~~~~~l~~~e~~~l---~~~~d~~~~g~I~y~eFl   79 (83)
T d1wlza1          27 ENFDTMKTNTISREEFRAICNRRVQILTDEQFDRL---WNEMPVNAKGRLKYPDFL   79 (83)
T ss_dssp             HHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHH---HTTSCBCTTSCBCHHHHH
T ss_pred             HHHCCCCCceEChhHHHHHHHHhCCCCChhHHHHH---hhccccCCCCcEeHHHHH
Confidence            45688999999999987643334457899998666   677788999999988764

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=92.74  E-value=0.036  Score=38.95  Aligned_cols=51  Identities=22%  Similarity=0.457  Sum_probs=38.8

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+..+|. ++++++.++.   +..|.|++|.|+.+|.+
T Consensus        16 ~~D~d~~G~I~~~el~~-~l~~~g~~~s~~~~~~~~---~~~D~d~~g~I~f~eF~   67 (73)
T d2pq3a1          16 LFDKDGDGTITTKELGT-VMRSLGQNPTEAELQDMI---NEVDADGNGTIDFPEFL   67 (73)
T ss_dssp             HTCTTSSSEEEGGGHHH-HHHHTTCCCCHHHHHHHH---HHHCTTCSSEEEHHHHH
T ss_pred             HHcCCCCceEeHHHHHH-HHHHhCCCCCHHHHHHHH---HHhCCCCCCeEeHHHHH
Confidence            46888999999999765 4555654 6888876665   55689999999988764

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=92.50  E-value=0.017  Score=41.68  Aligned_cols=29  Identities=28%  Similarity=0.337  Sum_probs=27.2

Q ss_pred             CHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          347 AEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       347 s~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      |+|++.++.+-|+..|.|++|.|+..||.
T Consensus         1 T~ee~~e~~~~F~~~D~d~~G~I~~~El~   29 (81)
T d2opoa1           1 TPQDIADRERIFKRFDTNGDGKISSSELG   29 (81)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEEEHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCcHHHHH
Confidence            68999999999999999999999999875

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.33  E-value=0.019  Score=41.46  Aligned_cols=30  Identities=27%  Similarity=0.452  Sum_probs=27.4

Q ss_pred             CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          346 IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       346 is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|++++.++.+.|+..|.|++|.|+..||.
T Consensus         8 Lt~~~i~el~~~F~~~D~d~~G~I~~~el~   37 (81)
T d1avsa_           8 LSEEMIAEFKAAFDMFDADGGGDISTKELG   37 (81)
T ss_dssp             BCHHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCeEchhHHH
Confidence            589999999999999999999999999874

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.09  E-value=0.03  Score=40.29  Aligned_cols=51  Identities=22%  Similarity=0.444  Sum_probs=38.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .|..+| .++++++.++   |++.|.|++|.|+.+|..
T Consensus        22 ~~D~d~~G~I~~~el~~-~l~~~g~~~s~~e~~~~---~~~~D~d~~g~I~~~eF~   73 (81)
T d1avsa_          22 MFDADGGGDISTKELGT-VMRMLGQNPTKEELDAI---IEEVDEDGSGTIDFEEFL   73 (81)
T ss_dssp             HHCTTCSSEECHHHHHH-HHHHTTCCCCHHHHHHH---HHHHCTTCCSSEEHHHHH
T ss_pred             HHcCCCCCeEchhHHHH-HHHHcCCCCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            45789999999999754 345554 4577877665   566799999999988754

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=92.08  E-value=0.032  Score=40.13  Aligned_cols=51  Identities=29%  Similarity=0.449  Sum_probs=38.9

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+... +..+| .++++++..+   |.+.|.|++|.|+.+|.+
T Consensus        23 ~~D~d~~G~I~~~el~~~-l~~~g~~~~~~ev~~~---~~~~D~d~dg~I~~~EF~   74 (81)
T d1fi5a_          23 MFDKNADGYIDLEELKIM-LQATGETITEDDIEEL---MKDGDKNNDGRIDYDEFL   74 (81)
T ss_dssp             HHCSSCSSEECHHHHHHH-HHTSSSCCCHHHHHHH---HHHHCSSSSSSEEHHHHH
T ss_pred             HHcCCCCCcccHHHHHHH-HHhcCCCCCHHHHHHH---HHHHCCCCCCcEeHHHHH
Confidence            468899999999997654 44554 5678888766   556689999999988764

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.03  E-value=0.03  Score=39.70  Aligned_cols=51  Identities=25%  Similarity=0.397  Sum_probs=38.9

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .|..+| +++++++.++   |++.|.|++|.|+.+|..
T Consensus        17 ~fD~~~~G~I~~~el~~-~l~~lg~~~~~~e~~~~---~~~~D~d~dg~I~~~EF~   68 (75)
T d1jc2a_          17 IFDKNADGFIDIEELGE-ILRATGEHVIEEDIEDL---MKDSDKNNDGRIDFDEFL   68 (75)
T ss_dssp             HHCCSTTSSEEHHHHHH-HHHHSSSCCCHHHHHHH---HHHHCSSSCSEECHHHHH
T ss_pred             HHcCCCcCeEcHHHHHH-HHHhcCCCccHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            45788999999999765 445555 5578887666   567789999999988764

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.13  E-value=0.073  Score=37.57  Aligned_cols=51  Identities=27%  Similarity=0.469  Sum_probs=38.5

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+... |...| ..+++++.++   |+++|.|++|.|+.+|.+
T Consensus        18 ~~D~d~~G~I~~~el~~~-l~~~g~~~t~~e~~~~---~~~~D~~~~g~I~~~eF~   69 (77)
T d1f54a_          18 LFDKDNNGSISSSELATV-MRSLGLSPSEAEVNDL---MNEIDVDGNHQIEFSEFL   69 (77)
T ss_dssp             HTCTTCSSEEEHHHHHHH-HHHHTCCCCHHHHHHH---HHTTCCSSCCEEEHHHHH
T ss_pred             HHcCCCCCeEChHHHHHH-HHHhCCCCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            468899999999998654 55555 4578877555   566689999999988754

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=91.02  E-value=0.052  Score=42.62  Aligned_cols=51  Identities=20%  Similarity=0.337  Sum_probs=38.6

Q ss_pred             eeecCCCCCcccchHHHHHHHHh-CCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEM-GKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~-g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+... ..++++++..+   |+..|.|++|.|+.+|.+
T Consensus        90 ~~D~d~~G~i~~~e~~~-~l~~~~~~~~~~~~~~i---~~~~D~d~dG~i~~~eF~  141 (146)
T d1exra_          90 VFDRDGNGLISAAELRH-VMTNLGEKLTDDEVDEM---IREADIDGDGHINYEEFV  141 (146)
T ss_dssp             HHSTTCSSCBCHHHHHH-HHHHTTCCCCHHHHHHH---HHHHCSSSSSSBCHHHHH
T ss_pred             HhCCCCCCcCCHHHHHH-HHHHHhhcCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            45788999999999765 44455 45578888776   556678999999988764

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Hydrozoa (Obelia longissima), obelin [TaxId: 32570]

Probab=90.95  E-value=0.052  Score=44.61  Aligned_cols=51  Identities=25%  Similarity=0.356  Sum_probs=36.7

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+... +...|. ++++++..+   |+.+|.|++|.|+.+|++
T Consensus       115 ~~D~d~~G~is~~E~~~~-l~~~g~~~~~~~~~~l---f~~~D~d~dG~Is~~EF~  166 (189)
T d1qv0a_         115 IFDKDGSGTITLDEWKAY-GKISGISPSQEDCEAT---FRHCDLDNAGDLDVDEMT  166 (189)
T ss_dssp             HTC----CEECHHHHHHH-HHHHSSCCCHHHHHHH---HHHSCCCTTSCEEHHHHH
T ss_pred             HHccCCCCcccchhhHHH-HHhcCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            458899999999998764 566664 788877544   778899999999998875

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.85  E-value=0.069  Score=36.51  Aligned_cols=51  Identities=18%  Similarity=0.379  Sum_probs=38.2

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+..+|. ++++++..+   |.+.|.|++|.|+.+|..
T Consensus        11 ~fD~d~~G~I~~~el~~-~l~~lg~~~~~~e~~~l---~~~~D~d~~g~I~~~eF~   62 (65)
T d1fw4a_          11 VFDKDGNGYISAAELRH-VMTNLGEKLTDEEVDEM---IREADIDGDGQVNYEEFV   62 (65)
T ss_dssp             HHCTTCSSEECHHHHHH-HHHHTTCCCCHHHHHHH---HHTTCTTCSSSEEHHHHH
T ss_pred             HHcCCCCCcCCHHHHHH-HHHHhCCCCCHHHHHHH---HHHcCCCCCCcEeHHHHH
Confidence            35789999999999865 4566665 467777655   556789999999987753

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=90.65  E-value=0.05  Score=42.97  Aligned_cols=55  Identities=16%  Similarity=0.289  Sum_probs=34.4

Q ss_pred             eeeeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          319 LVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       319 l~~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +..+..+.+|.++-.||+......+...+.++  .+.+.|+.+|.|++|.|+.+||.
T Consensus        45 l~~~~~~~~~~i~~~eF~~~~~~~~~~~~~~~--~l~~aF~~~D~d~~G~I~~~el~   99 (142)
T d1wdcb_          45 LTAMLKEAPGPLNFTMFLSIFSDKLSGTDSEE--TIRNAFAMFDEQETKKLNIEYIK   99 (142)
T ss_dssp             HHHHHTTSSSCCCHHHHHHHHHHHTCSCCCHH--HHHHHHHTTCTTCCSCEEHHHHH
T ss_pred             HHHHHHhccCccccccccccccccccccchhh--hHHHhhhhhcccCCCcccHHHHH
Confidence            33333456677877887765554444443322  34566888888888888887764

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.50  E-value=0.051  Score=40.02  Aligned_cols=31  Identities=26%  Similarity=0.238  Sum_probs=27.4

Q ss_pred             CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          345 KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       345 ~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ++|+|+...+.+-|+.+|.|++|.|+.+++.
T Consensus         2 ~ls~ee~~~y~~~F~~~D~d~~G~i~~~e~~   32 (92)
T d1fi6a_           2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAK   32 (92)
T ss_dssp             CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCcccchhHHHHH
Confidence            4788999999999999999999999988764

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=90.21  E-value=0.064  Score=39.06  Aligned_cols=53  Identities=30%  Similarity=0.468  Sum_probs=40.8

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCcccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLMY  376 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~~  376 (378)
                      ...|.+++|.++..|+.. .|...| +++++++.++   |++.|.|++|.|+.+|.+.
T Consensus        30 ~~~D~d~~G~I~~~el~~-~l~~lg~~~s~~e~~~l---~~~~D~d~~g~I~~~EFl~   83 (87)
T d1s6ja_          30 KMIDTDNSGTITFDELKD-GLKRVGSELMESEIKDL---MDAADIDKSGTIDYGEFIA   83 (87)
T ss_dssp             HHHCTTCSSCEEHHHHHH-HHHTTTSSCCHHHHHHH---HHHHCTTCSSEECHHHHTT
T ss_pred             HHHcCCCCCcCcHHHHHH-HHHHcCCCCCHHHHHHH---HHHcCCCCCCeEeHHHHHH
Confidence            457889999999999754 455565 4678877555   6777999999999988764

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=90.18  E-value=0.0093  Score=43.88  Aligned_cols=44  Identities=25%  Similarity=0.467  Sum_probs=35.0

Q ss_pred             CCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          327 DGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       327 d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.++..+..+     ..+++++++.++.+.|+.+|.|++|.|+.+||.
T Consensus         3 ~g~id~~~~~m-----a~~l~~~~i~~l~~~F~~~D~d~~G~I~~~el~   46 (87)
T d1s6ja_           3 SGHIDDDDKHM-----AERLSEEEIGGLKELFKMIDTDNSGTITFDELK   46 (87)
T ss_dssp             SSSSSSHHHHS-----SSSSCSSSTTTTTTHHHHHCTTCSSCEEHHHHH
T ss_pred             CCccCchHHHH-----HhhCCHHHHHHHHHHHHHHcCCCCCcCcHHHHH
Confidence            45566655332     357888888889999999999999999999875

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=89.90  E-value=0.033  Score=42.92  Aligned_cols=54  Identities=24%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||+...-........++...+...|+.+|.|++|.|+.+++.
T Consensus        45 ~D~~~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~   98 (134)
T d1jfja_          45 IDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVT   98 (134)
T ss_dssp             HCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHHHHHCCSSSSEEEHHHHH
T ss_pred             hhhcccccccccccccccccccccccccccccccccccccccccCCcccHHHHH
Confidence            455666667766665432222333344444555666666677777776666653

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=89.86  E-value=0.048  Score=41.66  Aligned_cols=52  Identities=19%  Similarity=0.280  Sum_probs=37.6

Q ss_pred             eeecCCCCCcccchHHH--HHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVI--YKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~--~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+..  ..|...| +++++++.++   |++.|.|++|.|+.+|..
T Consensus        49 ~~D~d~~G~I~~~El~~~l~~l~~~g~~~~~~e~~~~---~~~~D~d~dG~I~~~EF~  103 (109)
T d5pala_          49 ILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKAL---LAAGDSDHDGKIGADEFA  103 (109)
T ss_dssp             HHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHH---HHHHCTTCSSSEEHHHHH
T ss_pred             hhcCCCCCeEcHHHHHHHHHHhhhccCcCCHHHHHHH---HHHhCCCCCCCEeHHHHH
Confidence            45889999999998642  2233334 5788888766   456688999999988754

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.66  E-value=0.017  Score=45.75  Aligned_cols=50  Identities=20%  Similarity=0.333  Sum_probs=30.6

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .|..+| +++++++.++.+.+   |.| +|.++.+|.+
T Consensus        84 ~~D~d~~G~I~~~el~~-~l~~~g~~lt~~e~~~l~~~~---d~~-dG~I~y~eF~  134 (140)
T d1ggwa_          84 VFDKDATGMIGVGELRY-VLTSLGEKLSNEEMDELLKGV---PVK-DGMVNYHDFV  134 (140)
T ss_dssp             TTCSSCSSCCCHHHHHH-HHHHHHSCSCHHHHHHHHHHT---TCS-SCCSTTTHHH
T ss_pred             HHhccCCCcchHHHHHH-HHHHcCCCCCHHHHHHHHHhh---CCC-CCEEeHHHHH
Confidence            45667777777766654 445555 36777776666554   444 5777766543

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.31  E-value=0.077  Score=42.43  Aligned_cols=52  Identities=25%  Similarity=0.386  Sum_probs=38.7

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..|+.. .+...| ..+++++..+   |+..|.|++|.|+.+|.+
T Consensus       103 ~~~D~d~~G~Is~~e~~~-~l~~~~~~~~~~~~~~l---~~~~D~d~dG~Is~~EF~  155 (162)
T d1topa_         103 RIFDKNADGFIDIEELGE-ILRATGEHVTEEDIEDL---MKDSDKNNDGRIDFDEFL  155 (162)
T ss_dssp             HHHCTTCSSCBCHHHHHH-HHHTTTCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             HHHCCCCCCCCcHHHHHH-HHHhhCCCCCHHHHHHH---HHHhCCCCCCcEEHHHHH
Confidence            346889999999999765 445555 4566666555   777789999999988764

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.23  E-value=0.071  Score=41.93  Aligned_cols=51  Identities=18%  Similarity=0.348  Sum_probs=32.5

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..|+.. .|..+| .++++++..+.+    .|.|++|.++-+|.+
T Consensus        88 ~~~D~d~~G~I~~~el~~-~l~~~g~~~~~~e~~~l~~----~~~d~dG~I~y~eF~  139 (145)
T d2mysc_          88 RVFDKEGNGTVMGAELRH-VLATLGEKMTEEEVEELMK----GQEDSNGCINYEAFV  139 (145)
T ss_pred             HHhhcCCCCEEcHHHHHH-HHHHhCCCCCHHHHHHHHh----hcCCCCCeEEHHHHH
Confidence            456677777787777665 345555 456777766653    255777777766654

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Sandworm (Nereis diversicolor) [TaxId: 126592]

Probab=88.87  E-value=0.072  Score=42.98  Aligned_cols=50  Identities=26%  Similarity=0.475  Sum_probs=39.0

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .+...| ++++++..   -|++.|.|++|.|+.+|.+
T Consensus       102 ~~D~d~dG~Is~~E~~~-~l~~~~-~~~~~~~~---~f~~~D~d~dG~Is~~Ef~  151 (174)
T d2scpa_         102 AVDTNEDNNISRDEYGI-FFGMLG-LDKTMAPA---SFDAIDTNNDGLLSLEEFV  151 (174)
T ss_dssp             HHCTTCSSSEEHHHHHH-HHHHTT-CCGGGHHH---HHHHHCTTCSSEECHHHHH
T ss_pred             HHCCCccccCCHHHHHH-HHHHHh-hhhHHHHH---HHhhcCCCCCCcEeHHHHH
Confidence            56889999999999865 455565 46666644   5888899999999998865

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=88.74  E-value=0.057  Score=41.00  Aligned_cols=51  Identities=20%  Similarity=0.301  Sum_probs=38.1

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC----CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG----KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g----~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .++.++    +.+++++.++   |++.|.|++|.|+.+|.+
T Consensus        48 ~~D~d~~G~I~~~el~~-~l~~l~~~~~~~~~~~~~~l---~~~~D~d~dG~I~~~EF~  102 (107)
T d2pvba_          48 VIDQDKSGFIEEDELKL-FLQNFSPSARALTDAETKAF---LADGDKDGDGMIGVDEFA  102 (107)
T ss_dssp             HHCTTCSSSBCHHHHHT-GGGGTCTTSCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             hhccCCCCcCcHHHHHH-HHHHhhcccccCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            45889999999999754 333432    5688887666   567789999999988764

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Nucleobindin 1 (CALNUC)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.61  E-value=0.083  Score=39.25  Aligned_cols=56  Identities=16%  Similarity=0.257  Sum_probs=37.2

Q ss_pred             eeeecCCCCCcccchHHHHHHHH---hCCC---------C-HHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKE---MGKI---------A-EKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~---~g~i---------s-~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.|+||.++..|+....-..   ..+.         + ++-...+..-|+++|.|++|.||.++.+
T Consensus        23 ~~~D~DgdG~i~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~D~d~DG~Is~~EF~   91 (99)
T d1snla_          23 ILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFL   91 (99)
T ss_dssp             HHHCSSCCSEEEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHH
T ss_pred             HHHCCCCCCcCCHHHHHHHHHHHHHhcchhhhhhhhhhhhHHHHHHHHHHHHHHcCCCCCCcCcHHHHH
Confidence            35688999999999975432111   1111         1 1122345677999999999999998865

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.57  E-value=0.11  Score=42.45  Aligned_cols=46  Identities=17%  Similarity=0.223  Sum_probs=37.2

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCcccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLMY  376 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~~  376 (378)
                      .|.+++|.++..||+..+         +.+.++..-|+..|.|++|+|+.+||.+
T Consensus        49 ~D~~~~G~i~~~EF~~l~---------~~~~~~~~~F~~fD~d~sG~I~~~El~~   94 (165)
T d1k94a_          49 LDRDHTGKMGFNAFKELW---------AALNAWKENFMTVDQDGSGTVEHHELRQ   94 (165)
T ss_dssp             HCTTCSSCBCHHHHHHHH---------HHHHHHHHHHHHHCTTCCSBCCHHHHHH
T ss_pred             hCCCCCCcCcHHHHHHHh---------hccchhHHHHHHhCCCCCCeEcHHHHHH
Confidence            578999999999997542         2345677889999999999999998753

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=88.49  E-value=0.14  Score=36.74  Aligned_cols=50  Identities=22%  Similarity=0.464  Sum_probs=37.4

Q ss_pred             eecC-CCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLD-NDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d-~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+ ++|.++..|... -|..+|. .+++++.++   |++.|.|++|.|+.+|.+
T Consensus        24 fD~d~~~G~I~~~el~~-~l~~lg~~~t~~el~~~---i~~~D~d~~G~I~f~eFl   75 (82)
T d1wrka1          24 FVLGAEDGSISTKELGK-VMRMLGQNPTPEELQEM---IDEVDEDGSGTVDFDEFL   75 (82)
T ss_dssp             HTTTCTTSSBCHHHHHH-HHHHTTCCCCHHHHHHH---HHTTCTTCCSSBCHHHHH
T ss_pred             HcCcCCCCeEeHHHHHH-HHHHcCCCCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            3556 478999988775 4567776 678888776   456789999999988754

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calerythrin
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=88.25  E-value=0.1  Score=41.67  Aligned_cols=50  Identities=24%  Similarity=0.555  Sum_probs=38.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++.+|+.. .+...| ++++++..+   |+.+|.|++|.|+.+|..
T Consensus       110 ~~D~d~dG~Is~~E~~~-~~~~~~-~~~~~~~~~---f~~~D~d~dG~i~~~Ef~  159 (176)
T d1nyaa_         110 MCDKNADGQINADEFAA-WLTALG-MSKAEAAEA---FNQVDTNGNGELSLDELL  159 (176)
T ss_dssp             HTCSSCCSEEEHHHHHH-HHHHTT-CCHHHHHHH---HHHHCTTCSSEEEHHHHH
T ss_pred             HHccCCChhhhHHHHHH-HHHhcC-CcHHHHHHH---HHHHCCCCCCcEeHHHHH
Confidence            45788999999999864 334444 677777555   677799999999998875

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

Probab=88.18  E-value=0.12  Score=41.97  Aligned_cols=51  Identities=24%  Similarity=0.403  Sum_probs=39.7

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .|...|. .+++++..   -|+..|.|++|.|+.+|.+
T Consensus       113 ~~D~d~~G~Is~~El~~-~l~~~g~~~~~~~~~~---lf~~~D~d~dG~Is~~EF~  164 (187)
T d1uhka1         113 IVDKDQNGAITLDEWKA-YTKAAGIIQSSEDCEE---TFRVCDIDESGQLDVDEMT  164 (187)
T ss_dssp             HHCTTCSSEECHHHHHH-HHHHHTSCCSHHHHHH---HHHHSCCCTTSCEEHHHHH
T ss_pred             HHccCCCcccchHHHHH-HHHHhCCCccHHHHHH---HHHHhCCCCCCCEeHHHHH
Confidence            46889999999999875 4555654 67787644   5677899999999998864

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=88.17  E-value=0.11  Score=43.28  Aligned_cols=45  Identities=24%  Similarity=0.347  Sum_probs=30.9

Q ss_pred             eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..||..-+         +.+..+...|+..|.|++|+|+..||.
T Consensus        72 ~D~d~~G~i~~~EF~~l~---------~~~~~~~~~F~~~D~d~sG~i~~~El~  116 (188)
T d1qxpa2          72 MDRDGNGKLGLVEFNILW---------NRIRNYLTIFRKFDLDKSGSMSAYEMR  116 (188)
T ss_dssp             HCC--CCCCCSSSHHHHH---------HHHHHHHHHHGGGCTTCCSCCBHHHHH
T ss_pred             hcCCCCCcccHHHHHHHH---------hhhHHHHHHHHHhCCCCCCEECHHHHH
Confidence            467778888888886421         234556677888888888888888774

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=88.01  E-value=0.15  Score=38.55  Aligned_cols=52  Identities=25%  Similarity=0.309  Sum_probs=37.9

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhC----CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMG----KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g----~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..|+.. .|..++    +.+++++..+   |++.|.|++|.|+.+|.+
T Consensus        48 ~~~D~d~~G~I~~~El~~-~l~~l~~~~~~~~~~e~~~~---~~~~D~d~dG~i~~~EF~  103 (109)
T d1rwya_          48 HILDKDKSGFIEEDELGS-ILKGFSSDARDLSAKETKTL---MAAGDKDGDGKIGVEEFS  103 (109)
T ss_dssp             HHHSTTCSSEECHHHHHT-HHHHHCTTCCCCCHHHHHHH---HHHHCTTCSSSEEHHHHH
T ss_pred             hcccCCCCCcCcHHHHHH-HHHHhccccccCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            345889999999999764 233332    4678887665   556688999999988754

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium- and integrin-binding protein, CIB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.81  E-value=0.12  Score=42.66  Aligned_cols=54  Identities=15%  Similarity=0.359  Sum_probs=38.8

Q ss_pred             eeecCCCCCcccchHHHHHHHH------hCCCCHHHHHHHHh-hhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKE------MGKIAEKDILQICN-QFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~------~g~is~edi~~i~~-~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|... .+..      ...++++++.++.+ -|++.|.|++|.||.+|..
T Consensus       103 ~~D~d~~G~I~~~el~~-~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~D~d~dG~Is~~EF~  163 (180)
T d1xo5a_         103 IFDFDDDGTLNREDLSR-LVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQ  163 (180)
T ss_dssp             HHCTTCSSSBCHHHHHH-HHHHHC------CCCCTTHHHHHHHHHHHHCTTCSSSBCHHHHH
T ss_pred             cccCCCCCeeeHHHHHH-HHHHHHhccccccccHHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            34889999999988654 2332      24566666666544 5899999999999998864

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=87.68  E-value=0.12  Score=39.16  Aligned_cols=45  Identities=22%  Similarity=0.417  Sum_probs=26.2

Q ss_pred             CCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCcccccccc
Q 040114          325 DNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADL  374 (378)
Q Consensus       325 d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~  374 (378)
                      +.+|.++-.||+...  ....-+++++   .+.|+.+|.|++|.|+.+||
T Consensus        19 d~dG~idf~EF~~~~--~~~~~~~~~~---~~~F~~~D~d~~G~I~~~El   63 (109)
T d1pvaa_          19 KAEGSFNHKKFFALV--GLKAMSANDV---KKVFKAIDADASGFIEEEEL   63 (109)
T ss_dssp             CSTTCCCHHHHHHHH--TCTTSCHHHH---HHHHHHHCTTCSSSBCHHHH
T ss_pred             CCCCCCcHHHHHHHH--HHccCCHHHH---HHHhhCccCCCcCeEcHHHH
Confidence            456677777775421  1222233333   45677777777777777765

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=87.42  E-value=0.14  Score=42.22  Aligned_cols=46  Identities=22%  Similarity=0.329  Sum_probs=32.4

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||....         ..+..+...|+..|.|++|+|+.+||.
T Consensus        69 ~~D~d~~G~I~~~EF~~~~---------~~~~~~~~~F~~~D~d~sG~I~~~El~  114 (186)
T d1df0a1          69 MLDEDGSGKLGLKEFYILW---------TKIQKYQKIYREIDVDRSGTMNSYEMR  114 (186)
T ss_dssp             HHCCSSSSEECHHHHHHHH---------HHHHHHHHHHHHHCTTCCSCEEGGGHH
T ss_pred             HHcCCCCCcccHHHHHHHH---------HhHHHHHHHHHhhCCCCCCcccHHHHH
Confidence            4567778888888876542         223456677888888888888888775

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=87.38  E-value=0.094  Score=39.90  Aligned_cols=52  Identities=25%  Similarity=0.387  Sum_probs=37.6

Q ss_pred             eeeecCCCCCcccchHHHHHHHHh---C-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEM---G-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~---g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..|... .|...   | .++++++.++.   ++.|.|++|.|+.+|..
T Consensus        48 ~~~D~d~~G~I~~~El~~-~l~~l~~~g~~ls~~ev~~~~---~~~D~d~dG~I~~~EF~  103 (109)
T d1pvaa_          48 KAIDADASGFIEEEELKF-VLKSFAADGRDLTDAETKAFL---KAADKDGDGKIGIDEFE  103 (109)
T ss_dssp             HHHCTTCSSSBCHHHHHT-GGGGTCTTCCCCCHHHHHHHH---HHHCTTCSSSBCHHHHH
T ss_pred             hCccCCCcCeEcHHHHHH-HHHHhhhcCCCCCHHHHHHHH---HHHCCCCcCcEeHHHHH
Confidence            346889999999998642 23332   3 46888887775   45588999999988753

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.18  E-value=0.079  Score=39.20  Aligned_cols=30  Identities=10%  Similarity=0.079  Sum_probs=20.2

Q ss_pred             CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          346 IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       346 is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +|++|..++.+-|+.+|.|++|.|+.+++.
T Consensus         4 lt~~e~~~~~~~F~~~D~d~~G~is~~e~~   33 (95)
T d1c07a_           4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVR   33 (95)
T ss_dssp             SCSHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCcHHHHH
Confidence            456666666777777777777777766653

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.17  E-value=0.2  Score=40.92  Aligned_cols=55  Identities=27%  Similarity=0.362  Sum_probs=39.7

Q ss_pred             eeecCCCCCcccchHHHH---HHHHhCC-CCHHHHHHHHh-hhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIY---KLKEMGK-IAEKDILQICN-QFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~---~L~~~g~-is~edi~~i~~-~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+..-   .+...|. .+++.+.++.+ -|++.|.|++|.|+.+|..
T Consensus        99 ~~D~d~~G~Is~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~  158 (183)
T d2zfda1          99 LYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWR  158 (183)
T ss_dssp             HHCTTSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHH
T ss_pred             ccccCCCCCccHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence            458899999999886432   2344443 46666666554 4999999999999988753

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=86.78  E-value=0.049  Score=37.75  Aligned_cols=50  Identities=22%  Similarity=0.487  Sum_probs=37.5

Q ss_pred             eecCCCCCcccchHHHHHHHHhCC--CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLDNDGSISKSEFVIYKLKEMGK--IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d~d~~v~~~e~~~~~L~~~g~--is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+++|.++..|+.. .+...|.  ++++++..+   |++.|.|++|.|+.+|..
T Consensus        11 ~D~d~~G~I~~~el~~-~l~~~g~~~~s~~e~~~~---~~~~D~d~dG~i~~~EF~   62 (68)
T d1c7va_          11 FDANGDGVIDFDEFKF-IMQKVGEEPLTDAEVEEA---MKEADEDGNGVIDIPEFM   62 (68)
T ss_dssp             HSCSGGGEECHHHHHH-HSSTTTTCCCCHHHHHHH---HHHHCSSGGGSEEHHHHH
T ss_pred             HcCCCcCeEcHHHHHH-HHHHhCCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            4778899999988765 3445543  688888776   456789999999988753

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=86.69  E-value=0.15  Score=38.71  Aligned_cols=46  Identities=17%  Similarity=0.359  Sum_probs=33.3

Q ss_pred             CCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          325 DNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       325 d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +.+|.++-.||+...  ....-+++   ++.+.|+.+|.|++|.|+.+||.
T Consensus        19 ~~~G~idf~eF~~~~--~~~~~~~~---~l~~~F~~~D~d~~G~I~~~El~   64 (109)
T d5pala_          19 KDPGTFDYKRFFHLV--GLKGKTDA---QVKEVFEILDKDQSGFIEEEELK   64 (109)
T ss_dssp             CSTTCCCHHHHHHHH--TCTTCCHH---HHHHHHHHHCTTCSSEECHHHHH
T ss_pred             CCCCcCcHHHHHHHH--HhcCCCHH---HHHHHHhhhcCCCCCeEcHHHHH
Confidence            467889999997431  22222444   45678999999999999999974

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=86.67  E-value=0.089  Score=37.86  Aligned_cols=32  Identities=19%  Similarity=0.257  Sum_probs=28.8

Q ss_pred             CCCCHHHHHHHHhhhcccCCCC-Cccccccccc
Q 040114          344 GKIAEKDILQICNQFDLIDDSK-CGKITVADLM  375 (378)
Q Consensus       344 g~is~edi~~i~~~f~~ld~~~-~G~l~~~d~~  375 (378)
                      .+++++++.++.+.|+..|.|+ +|.|+..||.
T Consensus         7 ~~ls~eq~~~~~~~F~~fD~d~~~G~I~~~el~   39 (82)
T d1wrka1           7 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELG   39 (82)
T ss_dssp             HHCCHHHHHHHHHHHHHHTTTCTTSSBCHHHHH
T ss_pred             hhCCHHHHHHHHHHHHHHcCcCCCCeEeHHHHH
Confidence            4689999999999999999995 7999999885

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium- and integrin-binding protein, CIB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.59  E-value=0.2  Score=41.18  Aligned_cols=52  Identities=15%  Similarity=0.074  Sum_probs=38.5

Q ss_pred             eecC-CCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          322 ADLD-NDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       322 ~d~d-~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      .|.+ ++|.++-.||+...-..+.+.+.++..  .-.|+-.|.|++|.|+.+|+.
T Consensus        66 fd~~~~~g~I~f~EFv~~l~~~~~~~~~~~kl--~~~F~~~D~d~~G~I~~~el~  118 (180)
T d1xo5a_          66 FSTSPAKDSLSFEDFLDLLSVFSDTATPDIKS--HYAFRIFDFDDDGTLNREDLS  118 (180)
T ss_dssp             HCCSTTCCEECHHHHHHHHHHHSTTSCHHHHH--HHHHHHHCTTCSSSBCHHHHH
T ss_pred             ccCCCCCCcCcHHHHHHHHHHHhhcCCHHHHH--HHhhccccCCCCCeeeHHHHH
Confidence            3444 588999999987643445566666543  345999999999999999885

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=86.28  E-value=0.099  Score=41.56  Aligned_cols=50  Identities=22%  Similarity=0.137  Sum_probs=27.9

Q ss_pred             ecCCCCCcccchHHHHHHHHh--CCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          323 DLDNDGSISKSEFVIYKLKEM--GKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       323 d~d~d~~v~~~e~~~~~L~~~--g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +.+++|.++-.||+...-..+  ...+.++   +.+.|+.+|.|++|.|+.+||.
T Consensus        54 ~~~~~~~i~~~eFl~~~~~~~~~~~~~~~~---l~~aF~~~D~~~~G~I~~~el~  105 (152)
T d1wdcc_          54 HKMGEKSLPFEEFLPAYEGLMDCEQGTFAD---YMEAFKTFDREGQGFISGAELR  105 (152)
T ss_dssp             SSTTSCEECHHHHHHHHHHHTTSCCCCHHH---HHHHHHTTCSSSSSEEEHHHHH
T ss_pred             hccccccccccccccccccccccchhHHHh---hhhhhhccccccCccchHHHHH
Confidence            344556677777764322222  1223333   4566777777777777777663

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.16  E-value=0.2  Score=39.12  Aligned_cols=51  Identities=24%  Similarity=0.395  Sum_probs=31.1

Q ss_pred             ecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          323 DLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       323 d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +.++++.++..++.............+  ..+...|+.+|.|++|.|+.+|+.
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~aF~~~D~d~~G~I~~~el~  106 (146)
T d1lkja_          56 DVDGNHQIEFSEFLALMSRQLKSNDSE--QELLEAFKVFDKNGDGLISAAELK  106 (146)
T ss_dssp             CSSSCCEEEHHHHHHHHHHHTCCCCHH--HHHHHHHHHHCSSSSCEEEHHHHH
T ss_pred             ccCCcccccHHHHHHHHHHhhccccHH--HHHHHHHHHhCCCCCCcCcHHHHH
Confidence            344555555555554322222222222  345678999999999999999875

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.64  E-value=0.15  Score=42.07  Aligned_cols=52  Identities=27%  Similarity=0.397  Sum_probs=39.0

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..||+... ...+. ..++.+   ..-|+..|.|++|.|+.+|+.
T Consensus        70 ~~~D~~~~G~I~~~Ef~~~~-~~~~~~~~~e~~---~~~F~~~D~d~dG~is~~E~~  122 (190)
T d1fpwa_          70 TVFDKDNNGFIHFEEFITVL-STTSRGTLEEKL---SWAFELYDLNHDGYITFDEML  122 (190)
T ss_dssp             HTCCSSCSSEECHHHHHHHH-HHHSCCCSTHHH---HHHHHHHCSSCSSEEEHHHHH
T ss_pred             HHhCcCCCCcccHHHHHHHH-HHHccCchHHHH---HHHHHHhccCCCCcCcHHHHH
Confidence            35678899999999998754 44444 344444   456888899999999999874

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.62  E-value=0.27  Score=36.05  Aligned_cols=50  Identities=24%  Similarity=0.384  Sum_probs=37.3

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|.... +.. -.++++++.++   |+..|.|++|.|+.+|..
T Consensus        18 ~~D~d~~G~is~~e~~~~-l~~-~~l~~~~l~~i---~~~~D~d~dG~l~~~EF~   67 (95)
T d1c07a_          18 KTDKDMDGFVSGLEVREI-FLK-TGLPSTLLAHI---WSLCDTKDCGKLSKDQFA   67 (95)
T ss_dssp             HHCTTCSSEECHHHHHHH-HHT-TTCCHHHHHHH---HHHHCTTCSSSEETTTHH
T ss_pred             HHCCCCCCCCcHHHHHHH-HHh-cCCCHHHHHHH---HHHhCCCCCCeEcHHHHH
Confidence            358899999998887543 333 34788777554   667799999999998853

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.58  E-value=0.21  Score=38.99  Aligned_cols=50  Identities=22%  Similarity=0.432  Sum_probs=37.0

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+.. .|...| .++++++..+.+++   | |++|+|+.+|..
T Consensus        91 ~~D~d~~G~I~~~el~~-~l~~~g~~~~~~~~~~~~~~~---d-d~dG~I~~~eF~  141 (146)
T d1lkja_          91 VFDKNGDGLISAAELKH-VLTSIGEKLTDAEVDDMLREV---S-DGSGEINIQQFA  141 (146)
T ss_dssp             HHCSSSSCEEEHHHHHH-HHHHHTCSCCHHHHHHHHHHH---C-CSSSEEEHHHHH
T ss_pred             HhCCCCCCcCcHHHHHH-HHHHcCCcccHHHHHHHHHhc---c-CCCCeEeHHHHH
Confidence            46889999999999865 344554 45788887766555   6 899999987754

>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Light Chain Mlc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.54  E-value=0.19  Score=39.34  Aligned_cols=52  Identities=15%  Similarity=0.373  Sum_probs=40.1

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..|+... |..+| +++++++..+   |+.+|.|++|.|+-+|.+
T Consensus        88 ~~~D~~~~G~I~~~el~~~-l~~~g~~l~~~ei~~l---~~~~D~d~dG~I~y~eF~  140 (146)
T d1m45a_          88 QVFDKESTGKVSVGDLRYM-LTGLGEKLTDAEVDEL---LKGVEVDSNGEIDYKKFI  140 (146)
T ss_dssp             HTTCSSSSSEEEHHHHHHH-HHHSTTCCCHHHHHHH---HTTCCCCTTSEEEHHHHH
T ss_pred             Hhhccccccccchhhhhhh-hcccCCcchHHHHHHH---HHHhCCCCCCcEEHHHHH
Confidence            4567889999999887653 45665 5788888766   556789999999988864

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.90  E-value=0.25  Score=40.29  Aligned_cols=54  Identities=20%  Similarity=0.119  Sum_probs=38.6

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++-.||+...-....+.+.++.  +..-|+..|.|++|.|+.+|+.
T Consensus        61 ~~~d~~~dg~I~f~EFl~~l~~~~~~~~~~~~--~~~~F~~~D~d~~G~Is~~e~~  114 (183)
T d2zfda1          61 DLFDTKHNGILGFEEFARALSVFHPNAPIDDK--IHFSFQLYDLKQQGFIERQEVK  114 (183)
T ss_dssp             HHHCSSCSSSBCHHHHHHHHHHTSTTSCHHHH--HHHHHHHHCTTSSSSEEHHHHH
T ss_pred             HHHccCCCCcCcHHHHHHHHHhhhccCcHHHH--HHHhhcccccCCCCCccHHHHH
Confidence            34577889999999998653222334455543  3445899999999999998874

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.66  E-value=0.25  Score=38.02  Aligned_cols=51  Identities=22%  Similarity=0.402  Sum_probs=38.5

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..++.. .+...| .++++++..+   |+..|.|++|.|+.+|.+
T Consensus        87 ~~d~~~~G~i~~~el~~-~l~~~g~~l~~~e~~~l---~~~~D~d~dG~i~~~EF~  138 (141)
T d2obha1          87 LFDDDETGKISFKNLKR-VAKELGENLTDEELQEM---IDEADRDGDGEVSEQEFL  138 (141)
T ss_dssp             HHCTTCSSSBCHHHHHH-HHHHTTCCCCHHHHHHH---HHHHCTTSSSSBCHHHHH
T ss_pred             HhcccCCCCccHHHHHH-HHHHhCCCCCHHHHHHH---HHHHCCCCCCCEeHHHHH
Confidence            45778889999888754 555665 5788877655   666788999999988754

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Rat (Rattus norvegicus), s100a1 [TaxId: 10116]

Probab=83.58  E-value=0.13  Score=37.78  Aligned_cols=49  Identities=14%  Similarity=0.195  Sum_probs=33.1

Q ss_pred             ecCCC-CCcccchHHHHHHHHhC------CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          323 DLDND-GSISKSEFVIYKLKEMG------KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       323 d~d~d-~~v~~~e~~~~~L~~~g------~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      |-|++ |.+++.|+.. .|..++      ..+++++.+   -|+++|.|++|.|+.+|..
T Consensus        20 d~dg~~G~is~~El~~-~L~~~~~~~~~~~~~~~~~~~---~~~~~D~d~dG~Idf~EF~   75 (93)
T d1zfsa1          20 GKEGDKYKLSKKELKD-LLQTELSSFLDVQKDADAVDK---IMKELDENGDGEVDFQEFV   75 (93)
T ss_dssp             GGSSCCSSEEHHHHHH-HHHHHSTTTSCCSSCHHHHHH---HHHHHTTTCCSEECSHHHH
T ss_pred             ccCCCCCEecHHHHHH-HHHHhcccccccCCCHHHHHH---HHHHHcCCCCCCCcHHHHH
Confidence            45554 7899988754 333332      345665544   4788899999999988753

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Oncomodulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.57  E-value=0.15  Score=38.54  Aligned_cols=53  Identities=21%  Similarity=0.363  Sum_probs=37.3

Q ss_pred             eeeecCCCCCcccchHHHH--HHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIY--KLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~--~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++..|+...  .+...| +++++++..+   |++.|.|++|.|+.+|..
T Consensus        48 ~~~D~d~~G~I~~~El~~~l~~l~~~~~~l~~~~~~~~---~~~~D~d~dG~I~~~EF~  103 (108)
T d1rroa_          48 RFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSL---MDAADNDGDGKIGADEFQ  103 (108)
T ss_dssp             HHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHH---HHHHCCSSSSSEEHHHHH
T ss_pred             hhhcCCCCCeEcHHHHHHHHHHHHhccCCCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            3468899999999997532  122223 4678888766   455689999999988754

>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.55  E-value=0.17  Score=41.51  Aligned_cols=52  Identities=25%  Similarity=0.277  Sum_probs=38.4

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..||+...-..... +.++  .+...|+..|.|++|.|+.+|+.
T Consensus        68 ~~d~~~dg~I~~~EF~~~l~~~~~~-~~~e--~l~~~F~~~D~d~dG~i~~~El~  119 (187)
T d1g8ia_          68 VFDENKDGRIEFSEFIQALSVTSRG-TLDE--KLRWAFKLYDLDNDGYITRNEML  119 (187)
T ss_dssp             HHCTTCSSEEEHHHHHHHHHHHHHC-CHHH--HHHHHHHHHCTTCSSEEEHHHHH
T ss_pred             HhCcCCCCCCcHHHHHHHHHHhccC-chhh--hHHHHHHHHhcCCCCeEcHHHHH
Confidence            3467888999999998765444433 4333  34557999999999999999864

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.45  E-value=0.39  Score=34.88  Aligned_cols=49  Identities=20%  Similarity=0.248  Sum_probs=36.1

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCcccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADL  374 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~  374 (378)
                      ..|.+++|.++..|... .+...| ++++++..+   ++..|.|++|.|+.++.
T Consensus        17 ~~D~d~~G~i~~~e~~~-~l~~~~-l~~~~l~~i---~~~~D~d~dG~l~~~EF   65 (92)
T d1fi6a_          17 TIQPDLNGFIPGSAAKE-FFTKSK-LPILELSHI---WELSDFDKDGALTLDEF   65 (92)
T ss_dssp             TTCCSTTCEEEHHHHHH-HHHHHS-SCHHHHHHH---HHHHCTTCSSEEEHHHH
T ss_pred             HhCCCcccchhHHHHHH-HHHHcc-CCHHHHHHH---HHHhCCCCCCeecHHHH
Confidence            45788999998877654 344554 678777665   55668999999998875

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=83.28  E-value=0.19  Score=38.20  Aligned_cols=51  Identities=24%  Similarity=0.315  Sum_probs=37.1

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCC-CHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKI-AEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~i-s~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.++||.++..|+.. .+...|.. +++++   ..-|...|.|++|.|+.++..
T Consensus         8 ~~D~d~dG~is~~E~~~-~l~~~~~~~~~~~~---~~~~~~~D~~~~g~i~~~Ef~   59 (134)
T d1jfja_           8 EIDVNGDGAVSYEEVKA-FVSKKRAIKNEQLL---QLIFKSIDADGNGEIDQNEFA   59 (134)
T ss_dssp             HHCTTCSSEEEHHHHHH-HHHTTCCSSHHHHH---HHHHHHHCSSCCSEEEHHHHH
T ss_pred             HHcCCCcCCCcHHHHHH-HHHHcCCCCCHHHH---HHHHHHhhhcccccccccccc
Confidence            45789999999999765 45555544 44444   445777899999999988753

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.69  E-value=0.18  Score=37.15  Aligned_cols=29  Identities=14%  Similarity=0.173  Sum_probs=24.3

Q ss_pred             CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          346 IAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       346 is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      +++||..++.+-|+++| |++|.|+.+++.
T Consensus         4 ls~ee~~~y~~~F~~~D-~~~G~i~~~el~   32 (95)
T d2jxca1           4 VKPEDKAKYDAIFDSLS-PVNGFLSGDKVK   32 (95)
T ss_dssp             SCHHHHHHHHHHHHHTC-CBTTEEEHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCCceeHHHHH
Confidence            67888888888999999 888988887764

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=82.67  E-value=0.16  Score=38.29  Aligned_cols=47  Identities=21%  Similarity=0.290  Sum_probs=32.9

Q ss_pred             CCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCcccccccccc
Q 040114          325 DNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLMY  376 (378)
Q Consensus       325 d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~~  376 (378)
                      +.+|.++-.||+... . +-..+++   ++.+.|+.+|.|++|.|+.+|+..
T Consensus        18 ~~~gsi~~~eF~~~~-~-l~~~~~~---~l~~~F~~~D~d~~G~I~~~el~~   64 (107)
T d2pvba_          18 SAADSFKHKEFFAKV-G-LASKSLD---DVKKAFYVIDQDKSGFIEEDELKL   64 (107)
T ss_dssp             CSTTCCCHHHHHHHH-T-GGGSCHH---HHHHHHHHHCTTCSSSBCHHHHHT
T ss_pred             cCCCCcCHHHHHHHH-h-cccCCHH---HHHHHHHhhccCCCCcCcHHHHHH
Confidence            345678888887532 1 2222344   457789999999999999999853

>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Guanylate cyclase activating protein 2, GCAP-2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.93  E-value=0.37  Score=39.42  Aligned_cols=53  Identities=23%  Similarity=0.265  Sum_probs=37.3

Q ss_pred             eeeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          320 VAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       320 ~~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ...|.+++|.++-.||+...-.......++.+.   .-|+..|.|++|.++.+|+.
T Consensus        65 ~~~D~d~dG~I~f~Ef~~~l~~~~~~~~~~~~~---~~F~~~D~d~~g~i~~~E~~  117 (189)
T d1jbaa_          65 RAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLK---WTFKIYDKDRNGCIDRQELL  117 (189)
T ss_dssp             HHHCCSSSSEECHHHHHHHHHHHSSCCCTHHHH---HHHHHHCSSCSSCBCHHHHH
T ss_pred             HHhccCCCCeEeehhHHHHHHhhcccchHHHHH---HHHhhhccCCCCcccHhHHH
Confidence            356788999999999987544333333344443   34788899999999988764

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=81.58  E-value=0.31  Score=37.80  Aligned_cols=53  Identities=25%  Similarity=0.406  Sum_probs=38.5

Q ss_pred             eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++-.||+...-..+...  +....+...|+..|.|++|.|+.+|+.
T Consensus        53 ~~d~~~~g~i~~~ef~~~~~~~~~~~--~~~~~~~~~F~~~D~d~~G~i~~~e~~  105 (146)
T d1exra_          53 EVDADGNGTIDFPEFLSLMARKMKEQ--DSEEELIEAFKVFDRDGNGLISAAELR  105 (146)
T ss_dssp             HHCTTCSSSEEHHHHHHHHHHHHHHH--HHHHHHHHHHHHHSTTCSSCBCHHHHH
T ss_pred             hcCCCCCCcccHHHHHHHHHHHhhcc--ChHHHHHHHHHHhCCCCCCcCCHHHHH
Confidence            45778888999888876543333321  223456788999999999999998875

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Neurocalcin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.91  E-value=0.41  Score=38.61  Aligned_cols=52  Identities=27%  Similarity=0.396  Sum_probs=33.6

Q ss_pred             eeecCCCCCcccchHHHHHHHHhC------------CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114          321 AADLDNDGSISKSEFVIYKLKEMG------------KIAEKDILQICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       321 ~~d~d~d~~v~~~e~~~~~L~~~g------------~is~edi~~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ..|.+++|.++..|+....-....            ..+++.   +..-|++.|.|++|.||.+|..
T Consensus       103 ~~D~d~dg~i~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~if~~~D~d~dG~Is~~EF~  166 (181)
T d1bjfa_         103 MYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKR---TEKIFRQMDTNRDGKLSLEEFI  166 (181)
T ss_dssp             HHCTTCSSCEEHHHHHHHHHHHHTTCCCTTTSCGGGSSHHHH---HHHHHHHSCTTCSSEECHHHHH
T ss_pred             HhccCCCCeecHHHHHHHHHHHhhhccccccCCcccccHHHH---HHHHHHHhCCCCCCcEeHHHHH
Confidence            457789999999986543221111            112222   3344899999999999988754

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.74  E-value=0.18  Score=33.84  Aligned_cols=23  Identities=30%  Similarity=0.631  Sum_probs=20.4

Q ss_pred             HHHhhhcccCCCCCccccccccc
Q 040114          353 QICNQFDLIDDSKCGKITVADLM  375 (378)
Q Consensus       353 ~i~~~f~~ld~~~~G~l~~~d~~  375 (378)
                      ++.+.|+..|.|++|.|+..||.
T Consensus         2 el~~aF~~fD~~~~G~I~~~el~   24 (61)
T d2fcea1           2 DFVKAFQVFDKESTGKVSVGDLR   24 (61)
T ss_dssp             HHHHHHHHHCTTCCSCEEHHHHH
T ss_pred             hHHHHHHHHCCCCCCeEeHHHHH
Confidence            56788999999999999999875

>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]

Probab=80.52  E-value=0.32  Score=35.61  Aligned_cols=45  Identities=18%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             CCCcccchHHHHHHHH-----hCCCCHHHHHHHHhhhcccCCCCCcccccccc
Q 040114          327 DGSISKSEFVIYKLKE-----MGKIAEKDILQICNQFDLIDDSKCGKITVADL  374 (378)
Q Consensus       327 d~~v~~~e~~~~~L~~-----~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~  374 (378)
                      +|.++++|+....-..     ....+++.+..+   |+++|.|++|.|+.+|.
T Consensus        22 dG~is~~El~~~l~~~~~~~~~~~~~~~~v~~~---~~~~D~n~DG~I~F~EF   71 (92)
T d1a4pa_          22 KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKI---MKDLDQCRDGKVGFQSF   71 (92)
T ss_dssp             GCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHH---HHHHCTTSSSCBCHHHH
T ss_pred             CCEEcHHHHHHHHHHhccccccccCCHHHHHHH---HHHHhCCCCCCCcHHHH
Confidence            6889999976533221     122345555444   67889999999998874