Citrus Sinensis ID: 040121

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFHTDDSSHSSVSRRGSINQGPNEFIDKDEKLGSRSRAQLARFSSMEYRVAPIPNGSTKWRALNIPKPFNAMFGSSKKFFSASVPGSRIVSRATSPISRQPSPPRSTTPTPTLGGPTSPKILVDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKSPTFTFFSSSPPSIDVSSRTGSNNLLLSNGSSTASNRSSKQCQSEAATRNGSRTKEGESSNDNEWIEQDDPGGYIALTSLPGGLNYLKRVRFRFMETRIDKRRKEI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccHHHHHcccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccEEEEEEEccccccccEEEEEEccHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHcHcccccccEEEEccccccHHHHHHcccccccccEccHHHHHHHHHcccccccccccccccccccccccccccccHccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHEEEccccEEEEEEEcccccccEEEEEEEccHHHHHHHHHHc
Coil and Loop (DISEMBL)
mrsgcrlpfnnfkrkrhncynygmvfchsssskktlkasmapnpnkpyricdNCFSKLRkafhtddsshssvsrrgsinqgpnefidkdeklgsRSRAQLARFSSMeyrvapipngstkwralnipkpfnamfgsskkffsasvpgsrivsratspisrqpspprsttptptlggptspkilvddakrtndrVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAerlpvgtlrniksptftffsssppsidvssrtgsnnlllsngsstasnrsskqcqseaatrngsrtkegessndnewieqddpggyialtslpgglnyLKRVRFRFMETRIDKRRKEI
Flexible Loop (DISEMBL)
mrsgcrlpfnnfkrkrhnCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFhtddsshssvsrrgsinqgpnefidkdeklgsRSRAQLArfssmeyrvapipngstkwrALNIPKPFNAMFGSSKKFFSASVPGSRIVsratspisrqpspprsttptptlggptspkilvdDAKRTNDRvgqevenhtrkaqlqevelERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKSPTFTFFSSSPPSIDVSSRTGSNNLLLSngsstasnrsskqcqseaatrngsrtkegessndnewieqdDPGGYIALTSlpgglnylkrvrfrfmetridkrrkei
Low Complexity Region (SEG)
MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFHTDDsshssvsrrgsINQGPNEFIDKDEKLGSRSRAQLARFSSMEYRVAPIPNGSTKWRALNIPKPFNAMFGSSKKFFSASVPGSRIVSRAtspisrqpspprsttptptlggptspKILVDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKsptftffsssppsidvssrtgsnnlllsngsstasnrssKQCQSEAATRNGSRTKEGESSNDNEWIEQDDPGGYIALTSLPGGLNYLKRVRFRFMETRIDKRRKEI
Disordered region (IsUnstruct)
******LPFNNFKRKRHNCYNYGMVFCH*******************YRICDNCFSKLR*************************************************RVAPIPNGSTKWRALNIPKPFNAMFG**************************************************************************************AIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKSPTFTF****************************************************************PGGYIALTSLPGGLNYLKRVRFRFMET*********
Disordered Region (DISOPRED)
MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT**A***PNPNKPYRICDNCFS**********************************************************************************************************************************************************************************************************************************************************************************DDPGGYIALTSLPGGLNYLKRVRFRFMETRIDKRRKEI
Disordered Region (DISEMBL)
MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKA****************INQGPNEFIDKDEKLGSRSRAQLARFSSMEYRVAPIPNGSTKWRALNIPKPFNAMFGSSKKFFSASVPGSRIVSR**********************GPTSPKILVDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKSPTFTFFSS**********TGSNNLLLSN********************************DNEWIEQDDPGGYIALTSLPGGLNYLKRVRFRFMETR********
Disordered Region (DISPRO)
*RSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKA*********************************************************************************************************************PKILVDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPV********************************************************************DNEWIEQDDPGGYIALTSLPGGLNYLKRVRFRFMETRIDKRRKEI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFHTDDSSHSSVSRRGSINQGPNEFIDKDEKLGSRSRAQLARFSSMEYRVAPIPNGSTKWRALNIPKPFNAMFGSSKKFFSASVPGSRIVSRATSPISRQPSPPRSTTPTPTLGGPTSPKILxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKEAIAIAGEETAKxxxxxxxxxxxxxxxxxxxxxLPVGTLRNIKSPTFTFFSSSPPSIDVSSRTGSNNLLLSNGSSTASNRSSKQCQSEAATRNGSRTKEGESSNDNEWIEQDDPGGYIALTSLPGGLNYLKRVRFRFMETRIDKRRKEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	368	2.2.26 [Sep-21-2011]
Q8GZ92	384	Protein Brevis radix-like	no	no	0.103	0.098	0.585	9e-06
Q6YUB8	397	Protein Brevis radix-like	no	no	0.114	0.105	0.419	2e-05
O13821	610	Vacuolar protein sorting-	yes	no	0.133	0.080	0.423	9e-05
O82281	331	Protein Brevis radix-like	no	no	0.323	0.359	0.323	0.0002
Q5HZ09	370	Protein Brevis radix-like	no	no	0.323	0.321	0.313	0.0004
Q7Z6J4	655	FYVE, RhoGEF and PH domai	yes	no	0.138	0.077	0.351	0.0008
Q8GYL9	374	Protein Brevis radix-like	no	no	0.171	0.168	0.402	0.0009

>sp|Q8GZ92|BRXL4_ARATH Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 321 SSNDNEWIEQDDPGGYIALTSLPGGLNYLKRVRF---RFME 358
           S  DNEW+EQD+PG YI +  LPGG   L+RVRF   RF E
Sbjct: 325 SDVDNEWVEQDEPGVYITIKVLPGGKRELRRVRFSRERFGE 365

Arabidopsis thaliana (taxid: 3702)

>sp|Q6YUB8|BRXL1_ORYSJ Protein Brevis radix-like 1 OS=Oryza sativa subsp. japonica GN=BRXL1 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query: 293 SSTASNRSSKQCQSEAATRNGSRTKEGESSNDNEWIEQDDPGGYIALTSLPGGLNYLKRV 352
           S  AS RSS   +    +R  S +    S  + EW+E+D+PG YI + +LPGG+  L+RV
Sbjct: 310 SMDASMRSSSSPEEVDRSRELSVSVSNASDQEREWVEEDEPGVYITIRALPGGIRELRRV 369

Query: 353 RF 354
           RF
Sbjct: 370 RF 371

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O13821|VPS27_SCHPO Vacuolar protein sorting-associated protein 27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sst4 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 5   CRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFS 56
           CR PF  F  ++H+C N G VFC+  SSK      +    N+P R+CD+C+S
Sbjct: 179 CRTPFT-FTNRKHHCRNCGGVFCNQCSSKTLSLPHLG--INQPVRVCDSCYS 227

Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O82281|BRXL1_ARATH Protein Brevis radix-like 1 OS=Arabidopsis thaliana GN=BRXL1 PE=2 SV=2

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 56/136 (41%), Gaps = 17/136 (12%)

Query: 236 KEVIKSLTAQLKDMAERL----------PVGTLRNI-KSPTFTFFSSSPPSIDVSSRTGS 284
           KE +KSLT Q+KDMA +           P  +  N+ K P F   S S P       T S
Sbjct: 31  KEAVKSLTTQIKDMASKFSGSHKQSKPTPGSSSSNLRKFPDFDTASESVPYPYPGGSTSS 90

Query: 285 NNLL-LSNGSSTASNRSSKQCQSEAATRNGSRTKEG-----ESSNDNEWIEQDDPGGYIA 338
                L   S   S R   +  S       S + +      E     EW+ Q +PG +I 
Sbjct: 91  TPAWDLPRSSYHQSGRPDSRFTSMYGGERESISAQSCDVVLEDDEPKEWMAQVEPGVHIT 150

Query: 339 LTSLPGGLNYLKRVRF 354
             SLP G N LKR+RF
Sbjct: 151 FVSLPSGGNDLKRIRF 166

May act as a regulator of cell proliferation and elongation in the root.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5HZ09|BRXL3_ARATH Protein Brevis radix-like 3 OS=Arabidopsis thaliana GN=BRXL3 PE=2 SV=2

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 18/137 (13%)

Query: 236 KEVIKSLTAQLKDMAERLPVGTLRNIKSPTFTFFSSSPPSI-DVSSRTGSNNLLLSNGSS 294
           K+ IKSLT+QLKDMA +   G  +N K  + T   +   +  D  + + S     S   +
Sbjct: 35  KQAIKSLTSQLKDMAVKAS-GAYKNCKPCSGTTNRNQNRNYADSDAASDSGRFHYSYQRA 93

Query: 295 TASNRSSKQCQSEAATR-NGSRTKEG---------------ESSNDNEWIEQDDPGGYIA 338
             +  + K   +E  +R  G  ++EG               E     EW+ Q +PG  I 
Sbjct: 94  GTATSTPKIWGNEMESRLKGISSEEGTPTSMSGRTESIVFMEDDEVKEWVAQVEPGVLIT 153

Query: 339 LTSLPGGLNYLKRVRFR 355
             SLP G N LKR+RFR
Sbjct: 154 FVSLPQGGNDLKRIRFR 170

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Z6J4|FGD2_HUMAN FYVE, RhoGEF and PH domain-containing protein 2 OS=Homo sapiens GN=FGD2 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5   CRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKL 58
           C+ PFN   R+RH+C   G V C   S     +A +  + N+P R+C +C++ L
Sbjct: 467 CQEPFNALTRRRHHCRACGYVVCARCSD---YRAELKYDDNRPNRVCLHCYAFL 517

Activates CDC42, a member of the Ras-like family of Rho-and Rac proteins, by exchanging bound GDP for free GTP. Activates JNK1 via CDC42 but not RAC1. Binds to phosphatidylinositol 4,5-bisphosphate, phosphatidylinositol 3,4,5-trisphosphate, phosphatidylinositol 5-monophosphate, phosphatidylinositol 4-monophosphate and phosphatidylinositol 3-monophosphate.

Homo sapiens (taxid: 9606)

>sp|Q8GYL9|BRXL2_ARATH Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 297 SNRSSKQCQSEAATRNGSRTKEGESSN-DNEWIEQDDPGGYIALTSLPGGLNYLKRVRF- 354
           S RSS   + E A  +G       +S+ + EW+EQD+ G YI + +LP G   L+RVRF 
Sbjct: 290 SARSSFSREEEEADHSGEELSVSNASDIETEWVEQDEAGVYITIRALPDGTRELRRVRFS 349

Query: 355 --RFMET 359
             +F ET
Sbjct: 350 REKFGET 356

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
359479203	1107	PREDICTED: uncharacterized protein LOC10	0.989	0.328	0.665	1e-140
296083842	953	unnamed protein product [Vitis vinifera]	0.989	0.381	0.665	1e-139
255572207	1100	Ran GTPase binding protein, putative [Ri	0.994	0.332	0.674	1e-134
224105957	1104	predicted protein [Populus trichocarpa]	0.994	0.331	0.677	1e-133
356554129	1106	PREDICTED: uncharacterized protein LOC10	0.994	0.330	0.671	1e-132
356501403	1109	PREDICTED: uncharacterized protein LOC10	0.994	0.330	0.681	1e-129
224055315	1109	predicted protein [Populus trichocarpa]	0.994	0.330	0.651	1e-127
357493985	1124	Lateral signaling target protein-like pr	0.994	0.325	0.665	1e-123
356526924	1099	PREDICTED: uncharacterized protein LOC10	0.983	0.329	0.633	1e-121
356567509	1106	PREDICTED: uncharacterized protein LOC10	0.983	0.327	0.633	1e-115

>gi|359479203|ref|XP_002279847.2| PREDICTED: uncharacterized protein LOC100248282 isoform 1 [Vitis vinifera]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/416 (66%), Positives = 303/416 (72%), Gaps = 52/416 (12%)

Query: 1    MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60
            M SGCRLPFN FKRKRHNCYN G+VFCHS SSKK+LKASMAPNPNKPYR+CDNCFSKLRK
Sbjct: 667  MCSGCRLPFN-FKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFSKLRK 725

Query: 61   AFHTDDSSHSSVSRRGSINQGPNEFIDKDEKLGSRSRAQLARFSSME------------- 107
            A  TD SS S+VSRRG  NQG NE IDKDEKL SRSR QLARFSSME             
Sbjct: 726  AIETDASSQSAVSRRGVTNQGLNELIDKDEKLDSRSRVQLARFSSMESLKQAESRTSKRN 785

Query: 108  -------YRVAPIPNGSTKWRALNIPKPFNAMFGSSKKFFSASVPGSRIVSRATSPISRQ 160
                    RV+PIPNG ++W      K  N +FGSSKKFFSASVPGSRIVSR TSPISR+
Sbjct: 786  KKLEFNSSRVSPIPNGGSQWGG--ALKSLNPVFGSSKKFFSASVPGSRIVSRTTSPISRR 843

Query: 161  PSPPRSTTPTPTLGGPTSPKILVDDAKRTNDRVGQE-------VENHTRKAQLQEVELER 213
            PSPPR+ TPTPTL G TSPKI+VDDAKRTND + QE       VEN TRKAQLQEVELER
Sbjct: 844  PSPPRAATPTPTLEGLTSPKIVVDDAKRTNDSLSQEVIKLRVQVENLTRKAQLQEVELER 903

Query: 214  TTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKSPTFTFFSSSP 273
            TTKQLKEAIAIAGEETA+CKAAKEVIKSLTAQLKDMAERLPVG  RN KSP+FT   S+P
Sbjct: 904  TTKQLKEAIAIAGEETARCKAAKEVIKSLTAQLKDMAERLPVGAARNTKSPSFTSLGSNP 963

Query: 274  PSI------------DVSSR----TGSNNLLLSNGSSTASNRSS---KQCQSEAATRNGS 314
             S              ++S+     GSN  LLSNGSST +NRSS   +    EA  RNGS
Sbjct: 964  ASSDLSSLSIDRINGQITSQEPDLNGSNGQLLSNGSSTTNNRSSGHNRLGHLEATIRNGS 1023

Query: 315  RTKEGESSNDNEWIEQDDPGGYIALTSLPGGLNYLKRVRF---RFMETRIDKRRKE 367
            RTKE E  NDNEW+EQD+PG YI LTSLPGG+  LKRVRF   RF E + ++   E
Sbjct: 1024 RTKESEHRNDNEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAE 1079

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083842|emb|CBI24230.3| unnamed protein product [Vitis vinifera]

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 277/416 (66%), Positives = 303/416 (72%), Gaps = 52/416 (12%)

Query: 1   MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60
           M SGCRLPFN FKRKRHNCYN G+VFCHS SSKK+LKASMAPNPNKPYR+CDNCFSKLRK
Sbjct: 513 MCSGCRLPFN-FKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFSKLRK 571

Query: 61  AFHTDDSSHSSVSRRGSINQGPNEFIDKDEKLGSRSRAQLARFSSME------------- 107
           A  TD SS S+VSRRG  NQG NE IDKDEKL SRSR QLARFSSME             
Sbjct: 572 AIETDASSQSAVSRRGVTNQGLNELIDKDEKLDSRSRVQLARFSSMESLKQAESRTSKRN 631

Query: 108 -------YRVAPIPNGSTKWRALNIPKPFNAMFGSSKKFFSASVPGSRIVSRATSPISRQ 160
                   RV+PIPNG ++W      K  N +FGSSKKFFSASVPGSRIVSR TSPISR+
Sbjct: 632 KKLEFNSSRVSPIPNGGSQWGG--ALKSLNPVFGSSKKFFSASVPGSRIVSRTTSPISRR 689

Query: 161 PSPPRSTTPTPTLGGPTSPKILVDDAKRTNDRVGQE-------VENHTRKAQLQEVELER 213
           PSPPR+ TPTPTL G TSPKI+VDDAKRTND + QE       VEN TRKAQLQEVELER
Sbjct: 690 PSPPRAATPTPTLEGLTSPKIVVDDAKRTNDSLSQEVIKLRVQVENLTRKAQLQEVELER 749

Query: 214 TTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKSPTFTFFSSSP 273
           TTKQLKEAIAIAGEETA+CKAAKEVIKSLTAQLKDMAERLPVG  RN KSP+FT   S+P
Sbjct: 750 TTKQLKEAIAIAGEETARCKAAKEVIKSLTAQLKDMAERLPVGAARNTKSPSFTSLGSNP 809

Query: 274 PSI------------DVSSR----TGSNNLLLSNGSSTASNRSS---KQCQSEAATRNGS 314
            S              ++S+     GSN  LLSNGSST +NRSS   +    EA  RNGS
Sbjct: 810 ASSDLSSLSIDRINGQITSQEPDLNGSNGQLLSNGSSTTNNRSSGHNRLGHLEATIRNGS 869

Query: 315 RTKEGESSNDNEWIEQDDPGGYIALTSLPGGLNYLKRVRF---RFMETRIDKRRKE 367
           RTKE E  NDNEW+EQD+PG YI LTSLPGG+  LKRVRF   RF E + ++   E
Sbjct: 870 RTKESEHRNDNEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAE 925

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572207|ref|XP_002527043.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223533605|gb|EEF35343.1| Ran GTPase binding protein, putative [Ricinus communis]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 280/415 (67%), Positives = 313/415 (75%), Gaps = 49/415 (11%)

Query: 1    MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60
            M SGCRLPFN FKRKRHNCYN G+VFCHS SSKK+LKASMAPNPNKP+R+CDNC+SKLRK
Sbjct: 659  MCSGCRLPFN-FKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPFRVCDNCYSKLRK 717

Query: 61   AFHTDDSSHSSVSRRGSINQGPNEFIDKDEKLGSRSRAQLARFSSME------------- 107
            A  TD SS SSVSRRGS+N G NEFIDKDEKL SRSRAQLARFSSME             
Sbjct: 718  AIETDASSQSSVSRRGSVNHGSNEFIDKDEKLDSRSRAQLARFSSMESLKQAENRSKRNK 777

Query: 108  ------YRVAPIPNGSTKWRALNIPKPFNAMFGSSKKFFSASVPGSRIVSRATSPISRQP 161
                   RV+P+PNG ++W ALNI K FN MFGSSKKFFSASVPGSRIVSRATSPISR+P
Sbjct: 778  KLEFNSSRVSPVPNGGSQWGALNISKSFNPMFGSSKKFFSASVPGSRIVSRATSPISRRP 837

Query: 162  SPPRSTTPTPTLGGPTSPKILVDDAKRTNDRVGQE-------VENHTRKAQLQEVELERT 214
            SPPRSTTPTPTLGG TSPK++V+DAKRTN+ + QE       VE+ TRKAQ+QEVELER 
Sbjct: 838  SPPRSTTPTPTLGGLTSPKLVVNDAKRTNESLSQEVNKLRAQVESLTRKAQVQEVELERA 897

Query: 215  TKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKSPTFTFFSSSPP 274
             KQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVG  RNIKSP+FT F  +P 
Sbjct: 898  AKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNIKSPSFTSFGPTPA 957

Query: 275  SIDVSSRT----------------GSNNLLLSNGSSTASNRSS---KQCQSEAATRNGSR 315
            S D+SS                  G N+ LLSNGS+T S R+S   KQ   EA  RNGSR
Sbjct: 958  SNDISSAAADRLNGQIASQEPDTNGLNSQLLSNGSTTTSMRNSGHNKQGHVEATVRNGSR 1017

Query: 316  TKEGESSNDNEWIEQDDPGGYIALTSLPGGLNYLKRVRF---RFMETRIDKRRKE 367
            TKE E+ ++ EW+EQD+PG YI LTSLPGG+  LKRVRF   RF E + ++   E
Sbjct: 1018 TKETETHHEAEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAE 1072

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105957|ref|XP_002313993.1| predicted protein [Populus trichocarpa] gi|222850401|gb|EEE87948.1| predicted protein [Populus trichocarpa]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 280/413 (67%), Positives = 310/413 (75%), Gaps = 47/413 (11%)

Query: 1    MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60
            M SGCRLPFN FKRKRHNCYN G+V+CHS SSKK+LKASMAPNPNK YR+CDNC++KLRK
Sbjct: 665  MCSGCRLPFN-FKRKRHNCYNCGLVYCHSCSSKKSLKASMAPNPNKAYRVCDNCYNKLRK 723

Query: 61   AFHTDDSSHSSVSRRGSINQGPNEFIDKDEKLGSRSRAQLARFSSME------------- 107
            A  TD SS SSVSRRGS+NQGP EFID+DEKL  RSRAQLARFSSME             
Sbjct: 724  AIETDASSQSSVSRRGSVNQGPREFIDEDEKLDFRSRAQLARFSSMESLKQAESRSKRNK 783

Query: 108  ------YRVAPIPNGSTKWRALNIPKPFNAMFGSSKKFFSASVPGSRIVSRATSPISRQP 161
                   RV+P+PNG ++W ALNI K FN MFGSSKKFFSASVPGSRIVSRATSPISR+P
Sbjct: 784  KLEFNSSRVSPVPNGGSQWGALNISKSFNPMFGSSKKFFSASVPGSRIVSRATSPISRRP 843

Query: 162  SPPRSTTPTPTLGGPTSPKILVDDAKRTNDRVGQEV-------ENHTRKAQLQEVELERT 214
            SPPRSTTPTPTLGG TSPKI+VDDAKR  + + QEV       E+ TRKAQLQEVELERT
Sbjct: 844  SPPRSTTPTPTLGGLTSPKIVVDDAKRNYESLNQEVIKLRAQMESLTRKAQLQEVELERT 903

Query: 215  TKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKSPTFTFFSSSPP 274
            T QLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVG  R+IKSP FT F SSP 
Sbjct: 904  TMQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGMGRSIKSPLFTSFGSSPT 963

Query: 275  SIDVSS--------------RTGSNNLLLSNGSSTASNR---SSKQCQSEAATRNGSRTK 317
            S DVS+                G +N LL NGSS  SNR    +KQ   EA T+NGSRTK
Sbjct: 964  SNDVSTIDRLNGQITCEEPDTNGLHNQLLLNGSSITSNRIAGHNKQGHLEATTKNGSRTK 1023

Query: 318  EGESSNDNEWIEQDDPGGYIALTSLPGGLNYLKRVRF---RFMETRIDKRRKE 367
            EGES ++ EW+EQD+PG YI LTS PGG+  LKRVRF   RF E + ++   E
Sbjct: 1024 EGESRHEAEWVEQDEPGVYITLTSQPGGIKDLKRVRFSRKRFSEKQAEQWWAE 1076

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554129|ref|XP_003545401.1| PREDICTED: uncharacterized protein LOC100802464 [Glycine max]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 280/417 (67%), Positives = 310/417 (74%), Gaps = 51/417 (12%)

Query: 1    MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60
            M SGCR+PFN FKRKRHNCYN G+VFCHS SSKK+LKASMAPNPNKPYR+CDNC +KLRK
Sbjct: 663  MCSGCRMPFN-FKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCLNKLRK 721

Query: 61   AFHTDDSSHSSVSRRGSINQGPNEFIDKDEKLGSRSRAQLARFSSME------------- 107
               TD SSHSSVSRRGS+NQGP E IDKD+KL SRSR QLARFSSME             
Sbjct: 722  TVETDASSHSSVSRRGSVNQGPLELIDKDDKLDSRSRNQLARFSSMESFKQVESRSSKKN 781

Query: 108  -------YRVAPIPNGSTKWRALNIPKPFNAMFGSSKKFFSASVPGSRIVSRATSPISRQ 160
                    RV+P+PNG ++W ALNI K FN +FGSSKKFFSASVPGSRIVSRATSPISR+
Sbjct: 782  KKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRR 841

Query: 161  PSPPRSTTPTPTLGGPTSPKILVDDAKRTNDRVGQE-------VENHTRKAQLQEVELER 213
            PSPPRSTTPTPTLGG  SPKI+VDDAKRTND + QE       VEN TRKAQLQEVELER
Sbjct: 842  PSPPRSTTPTPTLGGLASPKIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELER 901

Query: 214  TTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKSPTF-TFFSSS 272
            T KQLK+AIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVG  R +KSPT  + F S 
Sbjct: 902  TAKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARTVKSPTLASSFGSI 961

Query: 273  PPSIDVS----------------SRTGSNNLLLSNGSSTASNRS---SKQCQSEAATRNG 313
            P S DVS                  TGSN  L SNGSST S+RS   +KQ Q ++  RNG
Sbjct: 962  PCSNDVSYASTDRLNIQATSPEADLTGSNYQLHSNGSSTVSSRSAGHTKQSQPDSTNRNG 1021

Query: 314  SRTKEGESSNDNEWIEQDDPGGYIALTSLPGGLNYLKRVRF---RFMETRIDKRRKE 367
            SRTK+ ES N+ EW+EQD+PG YI LTSLPGG+  LKRVRF   RF E + ++   E
Sbjct: 1022 SRTKDSESRNETEWVEQDEPGVYITLTSLPGGIIDLKRVRFSRKRFSEKQAEQWWAE 1078

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501403|ref|XP_003519514.1| PREDICTED: uncharacterized protein LOC100806439 [Glycine max]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 284/417 (68%), Positives = 312/417 (74%), Gaps = 51/417 (12%)

Query: 1    MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60
            M SGCR+PFN FKRKRHNCYN G+VFCHS SSKK+LKASMAPNPNKPYR+CDNCF+KLRK
Sbjct: 666  MCSGCRMPFN-FKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 724

Query: 61   AFHTDDSSHSSVSRRGSINQGPNEFIDKDEKLGSRSRAQLARFSSME------------- 107
               TD SSHSSVSRRG  NQGP E IDKD+KL SRSR QLARFSSME             
Sbjct: 725  TVETDSSSHSSVSRRGVANQGPLELIDKDDKLDSRSRNQLARFSSMESFKQVESRSSKKN 784

Query: 108  -------YRVAPIPNGSTKWRALNIPKPFNAMFGSSKKFFSASVPGSRIVSRATSPISRQ 160
                    RV+PIPNG ++W A NI K FN +FGSSKKFFSASVPGSRIVSRATSPISR+
Sbjct: 785  KKLEFNSSRVSPIPNGGSQWGASNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRR 844

Query: 161  PSPPRSTTPTPTLGGPTSPKILVDDAKRTNDRVGQE-------VENHTRKAQLQEVELER 213
            PSPPRSTTPTPTLGG TSP I+VDDAKRTND + QE       VEN TRKAQLQEVELER
Sbjct: 845  PSPPRSTTPTPTLGGLTSPNIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELER 904

Query: 214  TTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKSPTFTF-FSSS 272
            TTKQLK+AIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVG  R +KSPT T  F S+
Sbjct: 905  TTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARTVKSPTLTASFGSN 964

Query: 273  PPSIDVS----------------SRTGSNNLLLSNGSSTASNRS---SKQCQSEAATRNG 313
            P S DVS                  TGSNN L SNGSST S+RS   +KQ QS++  RNG
Sbjct: 965  PCSNDVSYASIDRLNIQATSPEADLTGSNNHLHSNGSSTVSSRSTGHTKQSQSDSTNRNG 1024

Query: 314  SRTKEGESSNDNEWIEQDDPGGYIALTSLPGGLNYLKRVRF---RFMETRIDKRRKE 367
            SRTK+ ES N+ EW+EQD+PG YI LTSLPGG+  LKRVRF   RF E + ++   E
Sbjct: 1025 SRTKDSESRNETEWVEQDEPGVYITLTSLPGGIIDLKRVRFSRKRFSEKQAEQWWAE 1081

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055315|ref|XP_002298476.1| predicted protein [Populus trichocarpa] gi|222845734|gb|EEE83281.1| predicted protein [Populus trichocarpa]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 269/413 (65%), Positives = 303/413 (73%), Gaps = 47/413 (11%)

Query: 1    MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60
            M SGCRLP N FKRKRHNCYN G+V+CHS SSKK+LKASMAPNPNK YR+CDNC++KLRK
Sbjct: 670  MCSGCRLPLN-FKRKRHNCYNCGLVYCHSCSSKKSLKASMAPNPNKAYRVCDNCYNKLRK 728

Query: 61   AFHTDDSSHSSVSRRGSINQGPNEFIDKDEKLGSRSRAQLARFSSME------------- 107
            A  TD SS SSVSRRGS+NQGP+EFIDKDEKL +RSRAQLARFSSME             
Sbjct: 729  AMETDASSQSSVSRRGSVNQGPSEFIDKDEKLDTRSRAQLARFSSMESLKQAESRSKRNK 788

Query: 108  ------YRVAPIPNGSTKWRALNIPKPFNAMFGSSKKFFSASVPGSRIVSRATSPISRQP 161
                   RV+P+PNG ++W A NI K FN MF SSKKFFSASVPGSRI+SRATSPISR+P
Sbjct: 789  KLEFNSSRVSPVPNGGSQWGAFNISKSFNPMFASSKKFFSASVPGSRIISRATSPISRRP 848

Query: 162  SPPRSTTPTPTLGGPTSPKILVDDAKRTNDRVGQE-------VENHTRKAQLQEVELERT 214
            SPPRSTTPTPTLGG TSPKI+VDDAKRTN+ + QE       VEN + K QLQEVELER 
Sbjct: 849  SPPRSTTPTPTLGGLTSPKIVVDDAKRTNESLSQEVLKLRAQVENLSHKTQLQEVELERI 908

Query: 215  TKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKSPTFTFFSSSPP 274
            T++LKEA AIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVG  R+IKSP F  F SSP 
Sbjct: 909  TERLKEARAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARSIKSPLFASFGSSPT 968

Query: 275  SIDVSS--------------RTGSNNLLLSNGSSTASNRSS---KQCQSEAATRNGSRTK 317
            S DVS+                G +  LLSN SST SNR +    Q   EA  +NGSR K
Sbjct: 969  SNDVSTIDCLNGQSTCQEPDANGLHIQLLSNVSSTISNRGAGHNNQGHLEATIKNGSRNK 1028

Query: 318  EGESSNDNEWIEQDDPGGYIALTSLPGGLNYLKRVRF---RFMETRIDKRRKE 367
            E E  ++ EW+EQD+PG YI LTSLPGG+  LKRVRF   RF E + ++   E
Sbjct: 1029 EAEWRHEAEWVEQDEPGVYITLTSLPGGIKDLKRVRFSRKRFSEKQAEQWWAE 1081

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493985|ref|XP_003617281.1| Lateral signaling target protein-like protein [Medicago truncatula] gi|355518616|gb|AET00240.1| Lateral signaling target protein-like protein [Medicago truncatula]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 274/412 (66%), Positives = 310/412 (75%), Gaps = 46/412 (11%)

Query: 1    MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60
            M SGCRLPFN FKRKRHNCYN G+VFCHS SSKK+LKASMAPNPNKPYR+CD CF+KLRK
Sbjct: 686  MCSGCRLPFN-FKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDGCFNKLRK 744

Query: 61   AFHTDDSSHSSVSRRGSINQGPNEFIDKDEKLGSRSRAQLARFSSME------------- 107
               TD SSHSSVSRRGSINQG  E IDKD+KL +RSR QLARFSSME             
Sbjct: 745  TLETDSSSHSSVSRRGSINQGSLELIDKDDKLDTRSRNQLARFSSMESFKQVESRSSKKN 804

Query: 108  -------YRVAPIPNGSTKWRALNIPKPFNAMFGSSKKFFSASVPGSRIVSRATSPISRQ 160
                    RV+P+PNG ++  ALNI K FN +FGSSKKFFSASVPGSRIVSRATSPISR+
Sbjct: 805  KKLEFNSSRVSPVPNGGSQRGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRR 864

Query: 161  PSPPRSTTPTPTLGGPTSPKILVDDAKRTNDRVGQE-------VENHTRKAQLQEVELER 213
            PSPPRSTTPTPTLGG T+PKI+VDDAK+TND + QE       VE+ TRKAQLQE+ELER
Sbjct: 865  PSPPRSTTPTPTLGGLTTPKIVVDDAKKTNDSLSQEVIKLRSQVESLTRKAQLQEIELER 924

Query: 214  TTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKSPTFTFFSSSP 273
            T+KQLK+AIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGT +++KSP+   F S+ 
Sbjct: 925  TSKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTAKSVKSPSIASFGSNE 984

Query: 274  PSIDVSSR------------TGSNNLLLSNGSSTASNRSS---KQCQSEAATRNGSRTKE 318
             S     R            TGSN  LLSNGSST SNRS+   KQ QS++  RNGSRTK+
Sbjct: 985  LSFAAIDRLNIQATSPEADLTGSNTQLLSNGSSTVSNRSTGQNKQSQSDSTNRNGSRTKD 1044

Query: 319  GESSNDNEWIEQDDPGGYIALTSLPGGLNYLKRVRF---RFMETRIDKRRKE 367
             ES ++ EW+EQD+PG YI LTSLPGG+  LKRVRF   RF E + +    E
Sbjct: 1045 SESRSETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAENWWAE 1096

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526924|ref|XP_003532065.1| PREDICTED: uncharacterized protein LOC100797527 [Glycine max]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 264/417 (63%), Positives = 302/417 (72%), Gaps = 55/417 (13%)

Query: 1    MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60
            M SGCR+PFN FKRKRHNCYN G+ FCHS S+KK++KASMAPNPNKPYR+CDNCF+K+RK
Sbjct: 660  MCSGCRVPFN-FKRKRHNCYNCGLAFCHSCSNKKSVKASMAPNPNKPYRVCDNCFNKIRK 718

Query: 61   AFHTDDSSHSSVSRRGSINQGPNEFIDKDEKLGSRSRAQLARFSSME------------- 107
               TD SS +S+SRRGS+NQG  EF  KD+KL SRS  QLARFSSME             
Sbjct: 719  TTETDSSSQASMSRRGSVNQGSLEFNGKDDKLDSRSHNQLARFSSMESLKQVDSRSSKKN 778

Query: 108  -------YRVAPIPNGSTKWRALNIPKPFNAMFGSSKKFFSASVPGSRIVSRATSPISRQ 160
                    RV+P PNG ++W A+NI K FN +FGSSKKFFSASVPGSRIVSRATSPISR+
Sbjct: 779  KKLEFNSSRVSPAPNGGSQWGAMNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRR 838

Query: 161  PSPPRSTTPTPTLGGPTSPKILVDDAKRTNDRVGQE-------VENHTRKAQLQEVELER 213
            PSPPRSTTPTPTLGG +SPKI+VDDAKR ND + QE       VEN TRKAQLQEVELER
Sbjct: 839  PSPPRSTTPTPTLGGLSSPKIVVDDAKRINDNLSQEVVKLRSQVENLTRKAQLQEVELER 898

Query: 214  TTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKS-PTFTFFSSS 272
            TTKQLKEAIAIA EETAKCKAAKEVIKSLTAQ KDMAERLPVG  RN +S P+   F  +
Sbjct: 899  TTKQLKEAIAIASEETAKCKAAKEVIKSLTAQWKDMAERLPVGASRNARSPPSLASFGLN 958

Query: 273  PPSIDV----------------SSRTGSNNLLLSNGSSTASNRSS---KQCQSEAATRNG 313
            P S D+                S   GS N LLSNGSST +NRS+   K  QS+A +RNG
Sbjct: 959  PGSNDLTNASFDRLNIQATSPESDLNGSTNQLLSNGSSTITNRSAGHIKHSQSDATSRNG 1018

Query: 314  SRTKEGESSNDNEWIEQDDPGGYIALTSLPGGLNYLKRVRF---RFMETRIDKRRKE 367
            S+TK+    N+ EW+EQD+PG YI LTSLPGG+  LKRVRF   RF E + ++   E
Sbjct: 1019 SKTKD----NETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAE 1071

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567509|ref|XP_003551961.1| PREDICTED: uncharacterized protein LOC100791947 [Glycine max]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 265/418 (63%), Positives = 306/418 (73%), Gaps = 56/418 (13%)

Query: 1    MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60
            M SGCR+PF NFKRKRHNCYN G+VFCHS S+KK++KASMAPNPNKPYR+CDNCF+K+RK
Sbjct: 666  MCSGCRVPF-NFKRKRHNCYNCGLVFCHSCSNKKSVKASMAPNPNKPYRVCDNCFNKIRK 724

Query: 61   AFHTDDSSHSSVSRRGSINQGPN-EFIDKDEKLGSRSRAQLARFSSME------------ 107
               TD SS SS+SRRGS+NQG + EF  KD+KL SRS  QLARFSSME            
Sbjct: 725  TTETDSSSQSSMSRRGSLNQGWSLEFNGKDDKLDSRSHNQLARFSSMESLKQVDSRSSKK 784

Query: 108  --------YRVAPIPNGSTKWRALNIPKPFNAMFGSSKKFFSASVPGSRIVSRATSPISR 159
                     RV+P PNG ++W A+NI K FN  FGSSKKFFSASVPGSRIVSRATSPISR
Sbjct: 785  NKKLEFNSSRVSPAPNGGSQWGAMNISKSFNPGFGSSKKFFSASVPGSRIVSRATSPISR 844

Query: 160  QPSPPRSTTPTPTLGGPTSPKILVDDAKRTNDRVGQE-------VENHTRKAQLQEVELE 212
            +PSPPRSTTPTPTLGG +SPK++VDDAKR ND + QE       VEN TRKAQLQEVELE
Sbjct: 845  RPSPPRSTTPTPTLGGLSSPKMVVDDAKRINDNLSQEVVKLRSQVENLTRKAQLQEVELE 904

Query: 213  RTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKS-PTFTFFSS 271
            RTTKQLKEAIAIA EETAKCKAAKEVIKSLTAQLKDMAERLPVG  RN++S P+   F  
Sbjct: 905  RTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGASRNVRSPPSLASFGL 964

Query: 272  SPPSIDV----------------SSRTGSNNLLLSNGSSTASNRSS---KQCQSEAATRN 312
            +P S D+                S  TGS N +LSNGSST +NRS+   K  QS+A +RN
Sbjct: 965  NPGSNDLTNASFDRLNIQATSPESDSTGSTNQILSNGSSTITNRSAGHIKHSQSDAISRN 1024

Query: 313  GSRTKEGESSNDNEWIEQDDPGGYIALTSLPGGLNYLKRVRF---RFMETRIDKRRKE 367
            G++TK+    N+ EW+EQD+PG YI LTSLPGG+  LKRVRF   RF E + ++   E
Sbjct: 1025 GNKTKD----NETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAE 1078

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
TAIR|locus:505006603	1075	AT5G12350 "AT5G12350" [Arabido	0.418	0.143	0.621	2.7e-87
TAIR|locus:2165770	1073	AT5G42140 "AT5G42140" [Arabido	0.154	0.053	0.689	9.5e-40
TAIR|locus:2025277	1103	PRAF1 "AT1G76950" [Arabidopsis	0.171	0.057	0.546	6.5e-34
TAIR|locus:2086253	1045	AT3G23270 "AT3G23270" [Arabido	0.157	0.055	0.644	2e-30
TAIR|locus:2079147	954	AT3G47660 "AT3G47660" [Arabido	0.274	0.105	0.415	5.5e-22
TAIR|locus:2009739	1006	AT1G65920 [Arabidopsis thalian	0.149	0.054	0.517	1.5e-21
TAIR|locus:2149897	384	BRXL4 "AT5G20540" [Arabidopsis	0.127	0.122	0.490	3.1e-06
TAIR|locus:2058694	331	BRXL1 "AT2G35600" [Arabidopsis	0.125	0.138	0.391	0.00011
TAIR|locus:2088212	374	ATBRXL2 "AT3G14000" [Arabidops	0.149	0.147	0.389	0.00029
POMBASE|SPAC19A8.05c	610	sst4 "sorting receptor for ubi	0.133	0.080	0.461	0.00066

TAIR|locus:505006603 AT5G12350 "AT5G12350" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 2.7e-87, Sum P(3) = 2.7e-87
 Identities = 100/161 (62%), Positives = 113/161 (70%)

Query:   109 RVAPIPNGSTKWRALNIPKPFNAMFGSSKKFFSASVPGSRIVSRAXXXXXXXXXXXXXXX 168
             RV+PIP+GS++  ALNI K FN +FG+SKKFFSASVPGSRIVSRA               
Sbjct:   786 RVSPIPSGSSQRGALNIAKSFNPVFGASKKFFSASVPGSRIVSRATSPISRRPSPPRSTT 845

Query:   169 XXXXXXXXXXXKILVDDAKRTNDRVGQEV-------ENHTRKAQLQEVELERTTKQLKEA 221
                        K +VDD KRTND + QEV       E+ TRKAQLQEVELERTTKQLKEA
Sbjct:   846 PTPTLSGLATPKFVVDDTKRTNDNLSQEVVKLRSQVESLTRKAQLQEVELERTTKQLKEA 905

Query:   222 IAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIK 262
             +AI  EET +CKAAKEVIKSLTAQLKDMAERLPVG+ R +K
Sbjct:   906 LAITNEETTRCKAAKEVIKSLTAQLKDMAERLPVGSARTVK 946

GO:0003682 "chromatin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009630 "gravitropism" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2165770 AT5G42140 "AT5G42140" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 9.5e-40, Sum P(3) = 9.5e-40
 Identities = 40/58 (68%), Positives = 46/58 (79%)

Query:     3 SGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60
             S CR  F  F RKRHNCYN G+V CHS SSKK+LKA++APNP KPYR+CD+C SKL K
Sbjct:   628 SACRQAFG-FTRKRHNCYNCGLVHCHSCSSKKSLKAALAPNPGKPYRVCDSCHSKLSK 684

GO:0003682 "chromatin binding" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0007165 "signal transduction" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

TAIR|locus:2025277 PRAF1 "AT1G76950" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 6.5e-34, Sum P(3) = 6.5e-34
 Identities = 35/64 (54%), Positives = 45/64 (70%)

Query:     3 SGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAF 62
             S CRL F  F RKRHNCYN G+V CHS SSKK  +A++AP+  + YR+CD+C+ KL K  
Sbjct:   639 STCRLAFG-FTRKRHNCYNCGLVHCHSCSSKKAFRAALAPSAGRLYRVCDSCYVKLSKVS 697

Query:    63 HTDD 66
               +D
Sbjct:   698 EIND 701

GO:0003682 "chromatin binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2086253 AT3G23270 "AT3G23270" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 2.0e-30, Sum P(3) = 2.0e-30
 Identities = 38/59 (64%), Positives = 46/59 (77%)

Query:     3 SGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKA 61
             SGCR  F  F RKRHNCYN G+V CH+ SSKK LKA++AP P KP+R+CD C+SKL+ A
Sbjct:   606 SGCRQAFG-FTRKRHNCYNCGLVHCHACSSKKALKAALAPTPGKPHRVCDACYSKLKAA 663

GO:0003682 "chromatin binding" evidence=ISS

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0007165 "signal transduction" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2079147 AT3G47660 "AT3G47660" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.5e-22, Sum P(2) = 5.5e-22
 Identities = 44/106 (41%), Positives = 61/106 (57%)

Query:     3 SGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAF 62
             SGCR PFN + RK HNCYN G VFC+S +SKK+L A+MAP  N+PYR+CD+C+ KL    
Sbjct:   646 SGCRHPFN-YMRKLHNCYNCGSVFCNSCTSKKSLAAAMAPKTNRPYRVCDDCYIKLEGI- 703

Query:    63 HTDDXXXXXXXXXXXINQGPNEFIDKDEKLGSRSRAQLARFSSMEY 108
               +                P+ + + DE +G   + QL R  S ++
Sbjct:   704 -RESLATPANSARFSNASLPSSY-EMDE-IGITPQRQLLRVDSFDF 746

GO:0003682 "chromatin binding" evidence=ISS

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2009739 AT1G65920 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.5e-21, Sum P(3) = 1.5e-21
 Identities = 29/56 (51%), Positives = 41/56 (73%)

Query:     3 SGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKL 58
             S C+  F  F R++HNCYN G++FC++ SSKK + AS+APN +K  R+CD+CF  L
Sbjct:   645 SSCKSAFG-FTRRKHNCYNCGLLFCNACSSKKAVNASLAPNKSKLSRVCDSCFDHL 699

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0046872 "metal ion binding" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2149897 BRXL4 "AT5G20540" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
 Identities = 25/51 (49%), Positives = 35/51 (68%)

Query:   308 AATRNGSRTKEGESSN----DNEWIEQDDPGGYIALTSLPGGLNYLKRVRF 354
             +++R+  R++E   SN    DNEW+EQD+PG YI +  LPGG   L+RVRF
Sbjct:   308 SSSRDADRSEEMSVSNASDVDNEWVEQDEPGVYITIKVLPGGKRELRRVRF 358

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2058694 BRXL1 "AT2G35600" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query:   309 ATRNGSRTKEGESSNDNEWIEQDDPGGYIALTSLPGGLNYLKRVRF 354
             ++R+   +    S    EW+E+D+PG YI +  LP G   L+RVRF
Sbjct:   260 SSRDEPPSMSNASEMQGEWVEEDEPGVYITIRQLPDGTRELRRVRF 305

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088212 ATBRXL2 "AT3G14000" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00029, Sum P(2) = 0.00029
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query:   305 QSEAATRNGSRTKEGESSN-DNEWIEQDDPGGYIALTSLPGGLNYLKRVRF---RFMET 359
             + E A  +G       +S+ + EW+EQD+ G YI + +LP G   L+RVRF   +F ET
Sbjct:   298 EEEEADHSGEELSVSNASDIETEWVEQDEAGVYITIRALPDGTRELRRVRFSREKFGET 356

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC19A8.05c sst4 "sorting receptor for ubiquitinated membrane proteins, ESCRT 0 complex subunit Sst4" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 117 (46.2 bits), Expect = 0.00066, Sum P(2) = 0.00066
 Identities = 24/52 (46%), Positives = 32/52 (61%)

Query:     5 CRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFS 56
             CR PF  F  ++H+C N G VFC+  SSK TL        N+P R+CD+C+S
Sbjct:   179 CRTPFT-FTNRKHHCRNCGGVFCNQCSSK-TLSLPHL-GINQPVRVCDSCYS 227

GO:0005628 "prospore membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006897 "endocytosis" evidence=IMP

GO:0006900 "membrane budding" evidence=IC

GO:0010008 "endosome membrane" evidence=IEA

GO:0031321 "ascospore-type prospore assembly" evidence=IGI

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=ISO

GO:0033565 "ESCRT-0 complex" evidence=IPI

GO:0043130 "ubiquitin binding" evidence=IMP

GO:0043328 "protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IMP

GO:0045053 "protein retention in Golgi apparatus" evidence=ISO

GO:0045324 "late endosome to vacuole transport" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022255001 SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (1101 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	368
smart00064	68	smart00064, FYVE, Protein present in Fab1, YOTB, V	3e-13
pfam13713	39	pfam13713, BRX_N, Transcription factor BRX N-termi	4e-13
pfam01363	68	pfam01363, FYVE, FYVE zinc finger	2e-12
cd00065	57	cd00065, FYVE, FYVE domain; Zinc-binding domain; t	6e-11
pfam08381	59	pfam08381, BRX, Transcription factor regulating ro	6e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003

>gnl|CDD|214499 smart00064, FYVE, Protein present in Fab1, YOTB, Vac1, and EEA1

 Score = 63.6 bits (155), Expect = 3e-13
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 3  SGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKL 58
           GC   FN  KR RH+C N G +FC   SSKK     +     +P R+CD+C+  L
Sbjct: 14 MGCGKEFNLTKR-RHHCRNCGRIFCSKCSSKKAPLPKLG--IERPVRVCDDCYENL 66

The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PHD finger and the RING finger. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. The FYVE finger functions in the membrane recruitment of cytosolic proteins by binding to phosphatidylinositol 3-phosphate (PI3P), which is prominent on endosomes. The R+HHC+XCG motif is critical for PI3P binding. Length = 68

>gnl|CDD|205888 pfam13713, BRX_N, Transcription factor BRX N-terminal domain

 Score = 62.6 bits (153), Expect = 4e-13
 Identities = 29/40 (72%), Positives = 31/40 (77%), Gaps = 1/40 (2%)

Query: 226 GEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKSPT 265
            EE AKCKAAKEVIKSLTAQLKDMAE+L  G  RN K  +
Sbjct: 1   AEEAAKCKAAKEVIKSLTAQLKDMAEKLS-GAYRNCKPCS 39

The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. This family features a short region, also alpha-helical, N-terminal to the repeated alpha-helices of family BRX, pfam08381. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action. Length = 39

>gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 3  SGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60
           GC  PF+ F+R RH+C N G VFC S SSKK          NKP R+CD+C+ KL+K
Sbjct: 13 MGCGKPFSFFRR-RHHCRNCGKVFCSSCSSKKIALLPKLGI-NKPVRVCDDCYDKLQK 68

The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn++ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. We have included members which do not conserve these histidine residues but are clearly related. Length = 68

>gnl|CDD|238022 cd00065, FYVE, FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;

 Score = 57.1 bits (138), Expect = 6e-11
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 3  SGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSK 57
           GC  PF   +R RH+C N G +FC   SS +    SM     KP R+CD+C+  
Sbjct: 6  MGCGKPFTLTRR-RHHCRNCGRIFCSKCSSNRIPLPSM--GGGKPVRVCDSCYEL 57

Length = 57

>gnl|CDD|203924 pfam08381, BRX, Transcription factor regulating root and shoot growth via Pin3

 Score = 54.2 bits (131), Expect = 6e-10
 Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 3/38 (7%)

Query: 324 DNEWIEQDDPGGYIALTSLPGGLNYLKRVRF---RFME 358
             EW+EQ +PG YI L +LP G   LKRVRF   RF E
Sbjct: 3   KAEWVEQVEPGVYITLVTLPDGTKILKRVRFSRKRFGE 40

The BREVIS RADIX (BRX) domain was characterized as being a transcription factor in plants regulating the extent of cell proliferation and elongation in the growth zone of the root. BRX is rate limiting for auxin-responsive gene-expression by mediating cross-talk with the brassino-steroid pathway. BRX has a ubiquitous, although quantitatively variable role in modulating the growth rate in both the root and the shoot. The family features a short region of alpha-helix, approximately 60 residues in length, which is found repeated up to three times. BRX is expressed in the vasculature and is rate-limiting for transcriptional auxin action. Length = 59

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 15/73 (20%), Positives = 29/73 (39%)

Query: 181 ILVDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIK 240
             +   ++   R+  EVE    +      EL     +++E      E   +   A+  I+
Sbjct: 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785

Query: 241 SLTAQLKDMAERL 253
            L AQ++ + E L
Sbjct: 786 ELEAQIEQLKEEL 798

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
PF08381	59	BRX: Transcription factor regulating root and shoo	99.9
PF13713	39	BRX_N: Transcription factor BRX N-terminal domain	99.65
PF01363	69	FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f	99.52
smart00064	68	FYVE Protein present in Fab1, YOTB, Vac1, and EEA1	99.43
KOG1818	634	consensus Membrane trafficking and cell signaling	99.43
cd00065	57	FYVE FYVE domain; Zinc-binding domain; targets pro	99.28
KOG1729	288	consensus FYVE finger containing protein [General	99.18
PTZ00303	1374	phosphatidylinositol kinase; Provisional	99.16
KOG1819	990	consensus FYVE finger-containing proteins [General	99.11
KOG1842	505	consensus FYVE finger-containing protein [General	98.63
KOG1841	1287	consensus Smad anchor for receptor activation [Def	98.29
KOG1843	473	consensus Uncharacterized conserved protein [Funct	98.07
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.03
KOG4424	623	consensus Predicted Rho/Rac guanine nucleotide exc	97.67
PF02318	118	FYVE_2: FYVE-type zinc finger; InterPro: IPR003315	96.76
KOG0230	1598	consensus Phosphatidylinositol-4-phosphate 5-kinas	96.61
KOG1811	1141	consensus Predicted Zn2+-binding protein, contains	96.08
KOG0230	1598	consensus Phosphatidylinositol-4-phosphate 5-kinas	94.99
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	89.47
KOG1729	288	consensus FYVE finger containing protein [General	86.76
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	85.64
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	82.5
PF07975	51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	82.03
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	81.3

>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members

Probab=99.90  E-value=2.1e-24  Score=163.50  Aligned_cols=45  Identities=56%  Similarity=0.951  Sum_probs=43.7

Q ss_pred             CCCceeeeeCCceEEEEEeCCCCccceeEEEE---ecChhhHHHhhhh
Q 040121          323 NDNEWIEQDDPGGYIALTSLPGGLNYLKRVRF---RFMETRIDKRRKE  367 (368)
Q Consensus       323 ~~~ewveq~epgv~it~~~~~~g~~~lkrvrf---~f~e~~a~~ww~e  367 (368)
                      .+.|||||+||||||||+++|||+++||||||   +|+|+||+.||+|
T Consensus         2 ~~~Ewveq~EpGVyiTl~~~p~G~~~LkRVRFSR~~F~e~qA~~WW~e   49 (59)
T PF08381_consen    2 EEKEWVEQDEPGVYITLVSLPDGGNDLKRVRFSRERFSEWQAERWWEE   49 (59)
T ss_pred             CCccEEEeeCCeeEEEEEECCCCCeeEEEEEEhhhhcCHHHHHHHHHH
Confidence            57899999999999999999999999999999   9999999999997

It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.

>PF13713 BRX_N: Transcription factor BRX N-terminal domain

Probab=99.65  E-value=6.2e-17  Score=113.58  Aligned_cols=38  Identities=79%  Similarity=1.018  Sum_probs=34.4

Q ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHHHhCCCCcccCCCCC
Q 040121          226 GEETAKCKAAKEVIKSLTAQLKDMAERLPVGTLRNIKSP  264 (368)
Q Consensus       226 ~eEsaK~kAAKEvIKSLTaQLKdMAeKLp~g~~~~~k~~  264 (368)
                      +|||+|||||||||||||+||||||+||| |++++++++
T Consensus         1 ~eEaak~kaaKe~IKsLt~QlK~maekl~-~~~~~~k~~   38 (39)
T PF13713_consen    1 AEEAAKCKAAKEVIKSLTAQLKDMAEKLP-GAYRNCKPC   38 (39)
T ss_pred             CccccccHHHHHHHHHHHHHHHHHHHhCc-hhhhccCCC
Confidence            58999999999999999999999999995 777777764

>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.52  E-value=2.3e-15  Score=116.32  Aligned_cols=58  Identities=36%  Similarity=0.714  Sum_probs=40.3

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhh
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLR   59 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~   59 (368)
                      .|+.|+++|+ |++||||||.||.+||..|+.+...++........++|||+.||..|+
T Consensus        11 ~C~~C~~~F~-~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~   68 (69)
T PF01363_consen   11 NCMICGKKFS-LFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ   68 (69)
T ss_dssp             B-TTT--B-B-SSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred             cCcCcCCcCC-CceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence            4899999999 889999999999999999999988776222345899999999999886

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....

>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1

Probab=99.43  E-value=5.1e-14  Score=108.54  Aligned_cols=56  Identities=38%  Similarity=0.858  Sum_probs=50.0

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhh
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLR   59 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~   59 (368)
                      .|..|+++|+ +++|+|||+.||.|||..|+..++.++..+.  .+|+|||+.||..|+
T Consensus        12 ~C~~C~~~F~-~~~rk~hCr~CG~i~C~~C~~~~~~~~~~~~--~~p~rvC~~C~~~~~   67 (68)
T smart00064       12 NCMGCGKEFN-LTKRRHHCRNCGRIFCSKCSSKKAPLPKLGI--ERPVRVCDDCYENLS   67 (68)
T ss_pred             cCcccCcccc-CcccccccccCCCCcChHHcCCeeecCccCC--CCCcEECHHHHHHhc
Confidence            4899999999 8899999999999999999999988776542  469999999999886

The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the

>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=3.2e-14  Score=149.67  Aligned_cols=61  Identities=34%  Similarity=0.706  Sum_probs=57.0

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhccCC
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFHT   64 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~e~   64 (368)
                      .|..|+..|+ |+.|+||||+||+|||..|+++.+.+|.+|.  .+++|||+.||+.|.+...+
T Consensus       167 ~C~rCr~~F~-~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi--~~~VRVCd~C~E~l~~~s~~  227 (634)
T KOG1818|consen  167 ECLRCRVKFG-LTNRKHHCRNCGQVFCGQCSSKSLTLPKLGI--EKPVRVCDSCYELLTRASVG  227 (634)
T ss_pred             ccceeeeeee-eccccccccccchhhccCccccccCcccccc--cccceehhhhHHHhhhcccc
Confidence            4999999999 8899999999999999999999999999985  79999999999999887665

>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;

Probab=99.28  E-value=1.3e-12  Score=97.06  Aligned_cols=53  Identities=42%  Similarity=0.919  Sum_probs=47.3

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHH
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFS   56 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~   56 (368)
                      .|+.|++.|+ ++.|+|||+.||.+||..|+.+...++.+  ...+++|||+.||.
T Consensus         4 ~C~~C~~~F~-~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~--~~~~~~rvC~~C~~   56 (57)
T cd00065           4 SCMGCGKPFT-LTRRRHHCRNCGRIFCSKCSSNRIPLPSM--GGGKPVRVCDSCYE   56 (57)
T ss_pred             cCcccCcccc-CCccccccCcCcCCcChHHcCCeeecCcc--cCCCccEeChHHhC
Confidence            4899999999 88899999999999999999998877654  35799999999985

>KOG1729 consensus FYVE finger containing protein [General function prediction only]

Probab=99.18  E-value=3.7e-12  Score=124.30  Aligned_cols=56  Identities=34%  Similarity=0.739  Sum_probs=50.5

Q ss_pred             CCCCCCC-CCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhh
Q 040121            1 MRSGCRL-PFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK   60 (368)
Q Consensus         1 ~C~~C~~-~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~   60 (368)
                      .|+.|.. .|+ ++.||||||+||.|||..|+.+...++.+   ..++.|||+.||..|..
T Consensus       170 ~C~~C~~~~Ft-l~~RRHHCR~CG~ivC~~Cs~n~~~l~~~---~~k~~rvC~~CF~el~~  226 (288)
T KOG1729|consen  170 ECMVCGCTEFT-LSERRHHCRNCGDIVCAPCSRNRFLLPNL---STKPIRVCDICFEELEK  226 (288)
T ss_pred             ecccCCCcccc-HHHHHHHHHhcchHhhhhhhcCccccccc---CCCCceecHHHHHHHhc
Confidence            4999999 999 99999999999999999999998766654   57999999999999976

>PTZ00303 phosphatidylinositol kinase; Provisional

Probab=99.16  E-value=1.3e-11  Score=131.23  Aligned_cols=60  Identities=17%  Similarity=0.486  Sum_probs=45.2

Q ss_pred             CCCCCCCCCCcc----cccccccccCCceeeCCCCCccccccc--C---C-CCCCCCcccccchHHHhhh
Q 040121            1 MRSGCRLPFNNF----KRKRHNCYNYGMVFCHSSSSKKTLKAS--M---A-PNPNKPYRICDNCFSKLRK   60 (368)
Q Consensus         1 ~C~~C~~~F~~f----~rRRHHCR~CG~VfC~sCSs~~~~~~~--l---~-p~~~kpvRVC~~C~~~L~~   60 (368)
                      .|+.|+++|+.+    +.||||||+||.+||..|++++..++.  +   + +....++|||+.||..+..
T Consensus       462 tC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq~En  531 (1374)
T PTZ00303        462 SCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKEYET  531 (1374)
T ss_pred             cccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHHHHh
Confidence            499999999833    258999999999999999998865321  1   1 1224577999999966543

>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]

Probab=99.11  E-value=1.5e-11  Score=126.24  Aligned_cols=54  Identities=31%  Similarity=0.725  Sum_probs=49.1

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCccccc-----chHHH
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICD-----NCFSK   57 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~-----~C~~~   57 (368)
                      .|+.|+.+|+ ++|||||||+||.|||+.|+...+++|..+.  .+..|||.     .||..
T Consensus       903 ~cmacq~pf~-afrrrhhcrncggifcg~cs~asapip~~gl--~ka~rvcrpqsnldc~~r  961 (990)
T KOG1819|consen  903 QCMACQMPFN-AFRRRHHCRNCGGIFCGKCSCASAPIPEHGL--DKAPRVCRPQSNLDCLTR  961 (990)
T ss_pred             hhhhccCcHH-HHHHhhhhcccCceeecccccCCCCCccccc--ccCceecCCcccccceee
Confidence            4999999999 8899999999999999999999999988775  78999999     77764

>KOG1842 consensus FYVE finger-containing protein [General function prediction only]

Probab=98.63  E-value=2.2e-09  Score=109.05  Aligned_cols=60  Identities=27%  Similarity=0.626  Sum_probs=45.9

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCccccc----------cc--CC--------CCCCCCcccccchHHHhhh
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLK----------AS--MA--------PNPNKPYRICDNCFSKLRK   60 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~----------~~--l~--------p~~~kpvRVC~~C~~~L~~   60 (368)
                      .|..|..+|+ +++||||||.||.|.|+.|+..-..-          +.  +.        +....++|+|..|...|..
T Consensus       182 ~CP~Ca~~F~-l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC~hCl~~L~~  260 (505)
T KOG1842|consen  182 FCPECANSFG-LTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLCMHCLDNLFR  260 (505)
T ss_pred             ccccccchhh-hHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHHHHHHHHHHH
Confidence            3999999999 99999999999999999998753210          00  00        1124569999999999876


Q ss_pred             c
Q 040121           61 A   61 (368)
Q Consensus        61 ~   61 (368)
                      .
T Consensus       261 R  261 (505)
T KOG1842|consen  261 R  261 (505)
T ss_pred             H
Confidence            4

>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]

Probab=98.29  E-value=1.5e-07  Score=104.09  Aligned_cols=50  Identities=20%  Similarity=0.373  Sum_probs=40.0

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccch
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNC   54 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C   54 (368)
                      .|+.|.+.|+ +++||||||+||+|+|+.|+..+..+-.+.   -..-|||..|
T Consensus       559 ncm~clqkft-~ikrrhhcRacgkVlcgvccnek~~leyl~---e~~~rv~nV~  608 (1287)
T KOG1841|consen  559 NCMDCLQKFT-PIKRRHHCRACGKVLCGVCCNEKSALEYLS---ESEGRVSNVD  608 (1287)
T ss_pred             hHHHHHhhcc-cccccccchhccceeehhhcchhhhhhhcC---cccccccccc
Confidence            3899999999 999999999999999999999987664442   2444555555

>KOG1843 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=9e-07  Score=89.68  Aligned_cols=58  Identities=17%  Similarity=0.246  Sum_probs=49.8

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhh
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLR   59 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~   59 (368)
                      .|++|..+|+.++-||||||.|+.+||..|+..+..+|.- +--..++|||+.|+..|.
T Consensus       162 lfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p-~a~d~l~RVldS~~~nl~  219 (473)
T KOG1843|consen  162 LFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVP-FAADPLQRVLDSCAFNLE  219 (473)
T ss_pred             ceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCC-cccCCHHHHHhhHhhccC
Confidence            4899999999999999999999999999999887666432 234789999999999993

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.03  E-value=8.8e-07  Score=88.32  Aligned_cols=60  Identities=23%  Similarity=0.582  Sum_probs=50.9

Q ss_pred             CCCCCCCCC----------cccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhccC
Q 040121            2 RSGCRLPFN----------NFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFH   63 (368)
Q Consensus         2 C~~C~~~F~----------~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~e   63 (368)
                      |..|.++|.          .+.-|.||||.||..+|..|++++...|.+++  ...+|+|+.||..+.....
T Consensus       285 cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~--e~~vR~~~~c~~~i~~~~~  354 (404)
T KOG1409|consen  285 CQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGF--EFSVRVCDSCYPTIKDEER  354 (404)
T ss_pred             hhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccc--eeEEEEecccchhhhcCCC
Confidence            778888885          12357899999999999999999999888876  7899999999999977644

>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]

Probab=97.67  E-value=8.7e-06  Score=85.60  Aligned_cols=62  Identities=21%  Similarity=0.403  Sum_probs=53.2

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhccCCC
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFHTD   65 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~e~~   65 (368)
                      .|..|+.+|+..+.|||||+.||.|+|+.|+.++..   +.++.+...|||..||.....+..+.
T Consensus       417 ~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~---l~~~~s~ssrv~~~~~~~~~~a~~s~  478 (623)
T KOG4424|consen  417 SCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAK---LSYDNSRSSRVCMDRYLTPSGAPGSP  478 (623)
T ss_pred             cchhhcCchhhHHHhhhhhhhccceeeccccchhhh---hcccccchhhhhhhhccCCCCCCCCc
Confidence            489999999999999999999999999999998654   34567899999999999887775543

>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A

Probab=96.76  E-value=0.00084  Score=57.57  Aligned_cols=51  Identities=16%  Similarity=0.395  Sum_probs=41.1

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhh
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK   60 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~   60 (368)
                      .|..|+.+|++++.+.+.|..|+.-+|..|...         ..+.+.-+|..|+....-
T Consensus        56 ~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---------~~~~~~WlC~vC~k~rel  106 (118)
T PF02318_consen   56 HCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---------SKKEPIWLCKVCQKQREL  106 (118)
T ss_dssp             B-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---------TSSSCCEEEHHHHHHHHH
T ss_pred             chhhhCCcccccCCCCCcCCcCCccccCccCCc---------CCCCCCEEChhhHHHHHH
Confidence            489999999977788999999999999999866         135778899999987543

The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.

>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]

Probab=96.61  E-value=0.001  Score=76.46  Aligned_cols=46  Identities=26%  Similarity=0.699  Sum_probs=36.4

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhh
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK   60 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~   60 (368)
                      +|..|.   + ..+|+|||+.||++||..|...          .-..+|||..|+.....
T Consensus         7 ~~~~~~---t-~~~~~~~~~~~g~~~~~~~~~~----------~~~~i~~~~~~~~~~~~   52 (1598)
T KOG0230|consen    7 VCYDCD---T-SVNRRHHCRVCGRVFCSKCQDS----------PETSIRVCNECRGQWEQ   52 (1598)
T ss_pred             chhccc---c-ccccCCCCcccCceeccccCCC----------Cccceeehhhhhhhccc
Confidence            477777   4 5568999999999999999821          12489999999998754

>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]

Probab=96.08  E-value=0.00073  Score=72.20  Aligned_cols=54  Identities=26%  Similarity=0.520  Sum_probs=42.5

Q ss_pred             CCC-CCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHh
Q 040121            2 RSG-CRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKL   58 (368)
Q Consensus         2 C~~-C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L   58 (368)
                      |+. |+..|. .+.||||||.||...|..|...+.....-+  ...|.++||.|+.+-
T Consensus       329 ~~a~~R~~~k-d~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~g--se~~Adg~Dq~psvs  383 (1141)
T KOG1811|consen  329 CMACCREHFK-DFNRKHHCRGCGALECAACEAKKGIQEDCG--SENPADGCDQCPSVS  383 (1141)
T ss_pred             HHHHHHHHHH-HHHHhhhccccchHHHhHHHHhhhhhhccc--ccCcccccccccchh
Confidence            443 566787 778999999999999999998876643332  468999999999653

>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]

Probab=94.99  E-value=0.013  Score=67.74  Aligned_cols=52  Identities=23%  Similarity=0.442  Sum_probs=36.5

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhccCC
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFHT   64 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~e~   64 (368)
                      .|+.|.+.|. -+||+|||  ||++||.+|    +.....+  .....   +.|.........+
T Consensus        99 ec~~~~~~~~-t~Rr~~~~--~gqi~~ss~----~~~~~~~--~~~e~---d~c~~~~~~~~~s  150 (1598)
T KOG0230|consen   99 ECYDCEQKFE-TFRRKHHC--CGQIFCSSC----IDGMSIR--CDGEL---DYCSRYVEDFAKS  150 (1598)
T ss_pred             hhhhhccchh-hhhccccc--CccccCCcc----cCCcccc--ccccc---chhHHHhhhhhcc
Confidence            3999999999 77899999  999999999    1111111  12222   8888877665553

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=89.47  E-value=2.3  Score=40.89  Aligned_cols=65  Identities=22%  Similarity=0.290  Sum_probs=53.7

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 040121          183 VDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDM  249 (368)
Q Consensus       183 ~d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdM  249 (368)
                      .++|++-|+++-.++..+.++-+.++.++++...++++|..--..=+.  ++.++|+..|-..||++
T Consensus        45 ~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~--k~~~dF~~~Lq~~Lk~V  109 (230)
T PF03904_consen   45 IQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTE--KVHNDFQDILQDELKDV  109 (230)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Confidence            478999999999999999999999999999999999998765555443  56778888887777765

>KOG1729 consensus FYVE finger containing protein [General function prediction only]

Probab=86.76  E-value=0.21  Score=49.47  Aligned_cols=55  Identities=20%  Similarity=0.320  Sum_probs=39.3

Q ss_pred             CCCCCCCCCcccccccccccCCceeeCCCCCccccc----ccCCCCCCCCcccccchHHH
Q 040121            2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLK----ASMAPNPNKPYRICDNCFSK   57 (368)
Q Consensus         2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~----~~l~p~~~kpvRVC~~C~~~   57 (368)
                      |..|...|. |.+|+|||+.||++||..|...+...    +.+..-.+.....|..|+..
T Consensus        23 ~~~~~~e~~-~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~   81 (288)
T KOG1729|consen   23 CRNCKVEFC-FGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN   81 (288)
T ss_pred             hhhhcccch-hhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence            677888999 88999999999999999998722221    22211235666777777766

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=85.64  E-value=5.3  Score=35.58  Aligned_cols=48  Identities=38%  Similarity=0.423  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 040121          189 TNDRVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKE  237 (368)
Q Consensus       189 ~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kAAKE  237 (368)
                      .|.-+.+||.+|++|.++++.+|.++..+++++-..+ +|+.|....-|
T Consensus        29 ~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l-ee~~~~~~~~E   76 (143)
T PF12718_consen   29 ENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL-EESEKRKSNAE   76 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHhHH
Confidence            3334445599999999999999999999999987755 56677666555

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=82.50  E-value=0.72  Score=41.82  Aligned_cols=25  Identities=32%  Similarity=0.522  Sum_probs=14.5

Q ss_pred             CCCCCCCCC-----------cccccccccccCCcee
Q 040121            2 RSGCRLPFN-----------NFKRKRHNCYNYGMVF   26 (368)
Q Consensus         2 C~~C~~~F~-----------~f~rRRHHCR~CG~Vf   26 (368)
                      |+.|+.+++           ...+|+++|.+||.-|
T Consensus         3 cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f   38 (154)
T PRK00464          3 CPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRF   38 (154)
T ss_pred             CCCCCCCCCEeEeccccCCCCceeeeeeccccCCcc
Confidence            777776662           1234457777776643

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=82.03  E-value=0.31  Score=36.49  Aligned_cols=31  Identities=26%  Similarity=0.494  Sum_probs=18.7

Q ss_pred             CCCCCCCCCCccc-----ccccccccCCceeeCCCC
Q 040121            1 MRSGCRLPFNNFK-----RKRHNCYNYGMVFCHSSS   31 (368)
Q Consensus         1 ~C~~C~~~F~~f~-----rRRHHCR~CG~VfC~sCS   31 (368)
                      .|++|.++|....     ..++.|..|+.+||..|=
T Consensus         1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD   36 (51)
T PF07975_consen    1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCD   36 (51)
T ss_dssp             EETTTTEE-TTS-------EEE--TTTT--B-HHHH
T ss_pred             CCccCCCCCCCcccccccCCeEECCCCCCccccCcC
Confidence            3899999998321     247999999999999884

It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=81.30  E-value=10  Score=41.01  Aligned_cols=27  Identities=26%  Similarity=0.406  Sum_probs=14.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 040121          185 DAKRTNDRVGQEVENHTRKAQLQEVEL  211 (368)
Q Consensus       185 ~lkk~n~~L~qEV~~L~~k~~~q~~el  211 (368)
                      +|.+.|..|.+|+..|+.+.+.++.+|
T Consensus       154 eL~~~~~~Le~e~~~l~~~v~~l~~eL  180 (546)
T PF07888_consen  154 ELLKENEQLEEEVEQLREEVERLEAEL  180 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555566666555555544444444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	368
1joc_A	125	Eea1 Homodimer Of C-Terminal Fyve Domain Bound To I		3e-04

>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol 1,3-Diphosphate Length = 125

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 15  KRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLR 59
           +RH+C   G +FC   S+K  L     P+  KP R+CD CF+ L+
Sbjct: 84  RRHHCRQCGNIFCAECSAKNAL----TPSSKKPVRVCDACFNDLQ 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	368
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	1e-14
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	5e-14
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	2e-13
3t7l_A	90	Zinc finger FYVE domain-containing protein 16; str	2e-11
1wfk_A	88	Zinc finger, FYVE domain containing 19; riken stru	3e-11
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	4e-10
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	6e-10
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	9e-10
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	4e-09
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	7e-07
1y02_A	120	CARP2, FYVE-ring finger protein sakura; zinc-bindi	7e-04

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Length = 82

 Score = 67.5 bits (165), Expect = 1e-14
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 4  GCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFH 63
           C   F+  +R +H+C N G +FC++ SS +       P+  KP R+CD+C + L +   
Sbjct: 24 QCEKEFSISRR-KHHCRNCGHIFCNTCSSNELA----LPSYPKPVRVCDSCHTLLLQRCS 78

Query: 64 TDDS 67
          +  S
Sbjct: 79 STAS 82

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Length = 125

 Score = 67.3 bits (164), Expect = 5e-14
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 3   SGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLR 59
             C   F+   R RH+C   G +FC   S+K      + P+  KP R+CD CF+ L+
Sbjct: 73  MACGKGFSVTVR-RHHCRQCGNIFCAECSAKNA----LTPSSKKPVRVCDACFNDLQ 124

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Length = 84

 Score = 64.0 bits (156), Expect = 2e-13
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 3  SGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKA 61
          +GC   F    R RH+C N G V C   S  +           +P R+CD C+  LR +
Sbjct: 25 NGCGCVFTTTVR-RHHCRNCGYVLCGDCSRHRAAIPMR--GITEPERVCDACYLALRSS 80

>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Length = 90

 Score = 58.7 bits (142), Expect = 2e-11
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 5  CRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFHT 64
          C++ F   KR RH+C   G VFC    ++K           K  R+C  C+  + KA   
Sbjct: 26 CQVKFTFTKR-RHHCRACGKVFCGVCCNRK----CKLQYLEKEARVCVVCYETISKAQAF 80

Query: 65 DDSSHSSVS 73
          +     + S
Sbjct: 81 ERMMSPTGS 89

>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Length = 88

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 4  GCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFH 63
          GC + F  FK+  + C N G  FC+   S     A +    N   ++C  C + L +   
Sbjct: 14 GCAVKFTLFKK-EYGCKNCGRAFCNGCLSFS---ALVPRAGNTQQKVCKQCHTILTRGSS 69

Query: 64 TDDSSHSSVSRRGS 77
           + S  S      S
Sbjct: 70 DNASKWSPPQNYKS 83

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220

 Score = 58.2 bits (140), Expect = 4e-10
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 4   GCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKA 61
            CR+ F    RK H+C N G VFC   ++K+           K  R+CD CF+ L++ 
Sbjct: 166 RCRVEFTFTNRK-HHCRNCGQVFCGQCTAKQCPLPKY--GIEKEVRVCDGCFAALQRG 220

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 84

 Score = 54.5 bits (131), Expect = 6e-10
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 4  GCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT----LKASMAPNPNKPYRICDNCFSKLR 59
          GC   F+  K++R  C N G  FC    S K     + A+      +   +C +C   L 
Sbjct: 19 GCSATFSVLKKRRS-CSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLS 77

Query: 60 K 60
          K
Sbjct: 78 K 78

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Length = 73

 Score = 53.5 bits (129), Expect = 9e-10
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 5  CRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKL 58
          C   F+   R +H+C + G VFC   SS       +     +P R+CD+CF   
Sbjct: 17 CSKKFSLLNR-KHHCRSCGGVFCQEHSSNSIPLPDL--GIYEPVRVCDSCFEDY 67

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226

 Score = 55.5 bits (133), Expect = 4e-09
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 3   SGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60
             CR+ F    RK H+C   G +FC   SSK +          K  R+C+ C+ +L +
Sbjct: 168 HRCRVQFGVMTRK-HHCRACGQIFCGKCSSKYSTIPKF--GIEKEVRVCEPCYEQLNR 222

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434

 Score = 50.0 bits (119), Expect = 7e-07
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 5   CRLPFNNFKRKRHNCYNYGMVFCHS-SSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60
           C   F+   R RH+C+  G + C + S +K  LK       ++  ++CD CF +L+K
Sbjct: 381 CGCDFSLTLR-RHHCHACGKIVCRNCSRNKYPLKY----LKDRMAKVCDGCFGELKK 432

>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Length = 120

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 16/72 (22%), Positives = 22/72 (30%), Gaps = 11/72 (15%)

Query: 3  SGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAF 62
            C   F N  RK   C +    FC + SS+               R+C  C      AF
Sbjct: 23 KSCGAHFANTARK-QTCLDCKKNFCMTCSSQVG----------NGPRLCLLCQRFRATAF 71

Query: 63 HTDDSSHSSVSR 74
            ++     V  
Sbjct: 72 QREELMKMKVKD 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	368
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	99.69
1wfk_A	88	Zinc finger, FYVE domain containing 19; riken stru	99.64
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	99.64
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	99.63
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	99.63
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	99.61
3t7l_A	90	Zinc finger FYVE domain-containing protein 16; str	99.59
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	99.58
1y02_A	120	CARP2, FYVE-ring finger protein sakura; zinc-bindi	99.45
2zet_C	153	Melanophilin; complex, GTP-binding protein, GTPase	95.89
1zbd_B	134	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.71
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	90.35
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	90.24
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	89.48
1wfh_A	64	Zinc finger (AN1-like) family protein; ZF-AN1 doma	89.38
1wfl_A	74	Zinc finger protein 216; ZF-AN1 domain, zinc bindi	88.8
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	88.0
1wff_A	85	Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc	87.61
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	87.55
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	86.2
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	85.01
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	84.28
2csz_A	76	Synaptotagmin-like protein 4; exophilin 2, granuph	80.83

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=1.5e-17  Score=133.23  Aligned_cols=62  Identities=31%  Similarity=0.545  Sum_probs=54.3

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCC----CCCCcccccchHHHhhhccC
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPN----PNKPYRICDNCFSKLRKAFH   63 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~----~~kpvRVC~~C~~~L~~~~e   63 (368)
                      .|+.|+.+|+ |++||||||+||.|||+.|+.++++++.++..    ..+++|||+.||..|.....
T Consensus        16 ~C~~C~~~F~-~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~~~~   81 (84)
T 1x4u_A           16 NCTGCSATFS-VLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKSGP   81 (84)
T ss_dssp             SCSSSCCCCC-SSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHSCCS
T ss_pred             cCcCcCCccc-cchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhccCC
Confidence            4999999999 88999999999999999999999998877642    14789999999999987533

>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1

Probab=99.64  E-value=1.1e-16  Score=129.53  Aligned_cols=59  Identities=25%  Similarity=0.546  Sum_probs=53.6

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhccC
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFH   63 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~e   63 (368)
                      .|+.|+.+|+ +++||||||+||.|||..|+.++++++.++   .+++|||+.||..|.....
T Consensus        11 ~C~~C~~~F~-~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g---~~~~RVC~~C~~~l~~~~~   69 (88)
T 1wfk_A           11 RCYGCAVKFT-LFKKEYGCKNCGRAFCNGCLSFSALVPRAG---NTQQKVCKQCHTILTRGSS   69 (88)
T ss_dssp             BCTTTCCBCC-SSSCEEECSSSCCEEETTTSCEEEEETTTT---SEEEEECHHHHHHHHHCCC
T ss_pred             CCcCcCCccc-CccccccCCCCCCEEChhHcCCceeccccC---CCcCEECHHHHHHHHhccc
Confidence            4999999999 889999999999999999999999888764   5899999999999988644

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1

Probab=99.64  E-value=2.7e-17  Score=128.50  Aligned_cols=58  Identities=28%  Similarity=0.606  Sum_probs=52.5

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhc
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKA   61 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~   61 (368)
                      .|+.|+++|+ +++||||||+||+|||+.|+.++++++.++.  .+++|||+.||..|...
T Consensus        13 ~C~~C~~~F~-~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~--~~~~RVC~~C~~~l~~i   70 (73)
T 1vfy_A           13 ACMICSKKFS-LLNRKHHCRSCGGVFCQEHSSNSIPLPDLGI--YEPVRVCDSCFEDYEFI   70 (73)
T ss_dssp             BCTTTCCBCB-TTBCCEECTTTCCEECGGGSCEEEEEGGGTE--EEEEEECHHHHHHHHHH
T ss_pred             cccCCCCccC-CccccccCCCCCEEEcccccCCeEEcccCCC--CCCCEECHHHHHHHHHH
Confidence            4999999999 8899999999999999999999998887753  58999999999998764

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}

Probab=99.63  E-value=6.2e-17  Score=129.68  Aligned_cols=58  Identities=31%  Similarity=0.674  Sum_probs=52.3

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhc
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKA   61 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~   61 (368)
                      .|+.|+++|+ +++||||||+||.|||..|+.++++++.++.  .+++|||+.||..|...
T Consensus        23 ~C~~C~~~Fs-~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~--~~~~RVC~~C~~~l~~~   80 (84)
T 1z2q_A           23 ACNGCGCVFT-TTVRRHHCRNCGYVLCGDCSRHRAAIPMRGI--TEPERVCDACYLALRSS   80 (84)
T ss_dssp             BCTTTCCBCC-TTSCCEECTTTCCEECTGGGCCEEEETTTTE--EEEEECCHHHHHHHHTS
T ss_pred             CCcCcCCccc-cchhcccccCCCcEEChHHhCCeEeccCCCC--CCCCEECHHHHHHHhhc
Confidence            4999999999 8899999999999999999999988876642  69999999999999764

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A

Probab=99.63  E-value=7.8e-17  Score=128.54  Aligned_cols=58  Identities=33%  Similarity=0.695  Sum_probs=50.3

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhccC
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFH   63 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~e   63 (368)
                      .|+.|+.+|+ +++||||||+||.|||+.|+.++++++.    ..+++|||+.||..|.....
T Consensus        21 ~C~~C~~~Fs-~~~RrHHCR~CG~v~C~~Cs~~~~~l~~----~~~~~RVC~~C~~~l~~~~~   78 (82)
T 2yw8_A           21 HCRQCEKEFS-ISRRKHHCRNCGHIFCNTCSSNELALPS----YPKPVRVCDSCHTLLLQRCS   78 (82)
T ss_dssp             BCTTTCCBCB-TTBCCEECTTTCCEECSGGGCEEECCTT----CSSCEEECHHHHHHTTC---
T ss_pred             cccCcCCccc-CccccccCCCCCCEEChHHhCCeeecCC----CCCcCEECHHHHHHHHHhcc
Confidence            4999999999 8999999999999999999999887764    36999999999999977544

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=99.61  E-value=1.8e-16  Score=135.86  Aligned_cols=55  Identities=36%  Similarity=0.794  Sum_probs=49.7

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhh
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK   60 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~   60 (368)
                      .|+.|+.+|+ +++||||||+||.|||+.|+.+++++|.    ..+|+|||+.||..|++
T Consensus        71 ~C~~C~~~Fs-~~~RrHHCR~CG~vfC~~Cs~~~~~~p~----~~~p~RVC~~C~~~l~g  125 (125)
T 1joc_A           71 NCMACGKGFS-VTVRRHHCRQCGNIFCAECSAKNALTPS----SKKPVRVCDACFNDLQG  125 (125)
T ss_dssp             BCTTTCCBCC-SSSCCEECTTTCCEECGGGSCEEECCTT----CSSCEEECHHHHHHTTC
T ss_pred             CCcCcCCccc-cccccccCCCCCeEEChHHhCCccccCC----CCCCCEeCHHHHHHhcC
Confidence            4999999999 8899999999999999999999887663    37999999999999864

>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}

Probab=99.59  E-value=2.6e-16  Score=127.69  Aligned_cols=58  Identities=29%  Similarity=0.659  Sum_probs=51.8

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhccC
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFH   63 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~e   63 (368)
                      .|+.|+.+|+ +++||||||+||.|||..|+.+++.++.+    .+++|||+.||..|.....
T Consensus        22 ~C~~C~~~F~-~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~----~~~~RVC~~C~~~l~~~~~   79 (90)
T 3t7l_A           22 NCMNCQVKFT-FTKRRHHCRACGKVFCGVCCNRKCKLQYL----EKEARVCVVCYETISKAQA   79 (90)
T ss_dssp             BCTTTCCBCC-SSSCCEECTTTCCEECGGGSCEEEEETTT----TEEEEECHHHHHHHHHHC-
T ss_pred             cCcCCCCccc-chhhCccccCCCCEECCcccCCeeecCCC----CCCCeECHHHHHHHHHHhh
Confidence            4999999999 88999999999999999999999877643    5899999999999988755

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=99.58  E-value=2.7e-16  Score=146.49  Aligned_cols=61  Identities=26%  Similarity=0.628  Sum_probs=52.4

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhccCC
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFHT   64 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~e~   64 (368)
                      .|+.|+.+|+ +++||||||+||.|||+.|+.+++.+|.++  ..+++|||+.||..|.+..||
T Consensus       166 ~C~~C~~~F~-~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~--~~~~~RVC~~C~~~l~~~~eg  226 (226)
T 3zyq_A          166 ECHRCRVQFG-VMTRKHHCRACGQIFCGKCSSKYSTIPKFG--IEKEVRVCEPCYEQLNRKAEG  226 (226)
T ss_dssp             BCTTTCCBCB-TTBCCEECTTTCCEECTTTCCEEEEEGGGT--EEEEEEECHHHHHHHCC----
T ss_pred             CCcCcCCCCC-ccccccccCCCcCEeChhhcCCcccCCCCC--CCCCCEeCHHHHHHhhhhccC
Confidence            4999999999 889999999999999999999998888764  368999999999999887664

>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1

Probab=99.45  E-value=1.8e-14  Score=123.03  Aligned_cols=50  Identities=22%  Similarity=0.369  Sum_probs=42.9

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhc
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKA   61 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~   61 (368)
                      .|+.|+.+|+ +++||||||+||.|||+.|+.++++          ++|||+.||..+...
T Consensus        21 ~C~~C~~~Fs-~~~RkHHCR~CG~ifC~~Cs~~~~~----------~vRVC~~C~~~~~~~   70 (120)
T 1y02_A           21 SCKSCGAHFA-NTARKQTCLDCKKNFCMTCSSQVGN----------GPRLCLLCQRFRATA   70 (120)
T ss_dssp             CCTTTCCCCS-SGGGCEECTTTCCEECGGGEEC--------------CCEEHHHHHHHHTT
T ss_pred             cccCcCCccc-cccccccCCCCCCeeCHHHhCCCCC----------CceECHHHHHHHhcc
Confidence            5999999999 8999999999999999999998653          499999999987654

>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}

Probab=95.89  E-value=0.0031  Score=55.56  Aligned_cols=50  Identities=22%  Similarity=0.529  Sum_probs=42.2

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhh
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLR   59 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~   59 (368)
                      .|..|..+|+++..+.+-|..|..-||..|...   .      .....=+|..|+..-.
T Consensus        70 ~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---~------~~~~~W~C~vC~k~re  119 (153)
T 2zet_C           70 HCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---H------PEEQGWLCDPCHLARV  119 (153)
T ss_dssp             BCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---C------SSSSSCEEHHHHHHHH
T ss_pred             cchhhcCccccccCCCCcCCCCCchhhcccccc---c------CCCCcEeeHHHHHHHH
Confidence            499999999988899999999999999999843   1      2456789999998754

>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1

Probab=95.71  E-value=0.0052  Score=53.00  Aligned_cols=59  Identities=12%  Similarity=0.208  Sum_probs=45.9

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhccCCC
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFHTD   65 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~e~~   65 (368)
                      .|..|..+|+++..+.|.|..|..-||..|......      ......=+|..|+..-.-...++
T Consensus        57 ~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~------~~~~~~W~C~vC~k~rel~~kSG  115 (134)
T 1zbd_B           57 RCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN------NRPHPVWLCKICLEQREVWKRSG  115 (134)
T ss_dssp             BCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC------SSSSCCEEEHHHHHHHHHHHHTS
T ss_pred             cccccCCCcccccCCCCCCCCCCcccccccCCccCC------CCCccceechhhHHHHHHHHhhh
Confidence            499999999967788999999999999999866211      13577789999999755444433

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=90.35  E-value=0.61  Score=33.53  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=33.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 040121          184 DDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKE  220 (368)
Q Consensus       184 d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~E  220 (368)
                      -.||..|+.|-+-|..|.+.|..+|.||+++.+=+++
T Consensus         7 ~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq   43 (48)
T 3vmx_A            7 LRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ   43 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999987764

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=90.24  E-value=0.6  Score=34.48  Aligned_cols=40  Identities=20%  Similarity=0.228  Sum_probs=35.6

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 040121          183 VDDAKRTNDRVGQEVENHTRKAQLQEVELERTTKQLKEAI  222 (368)
Q Consensus       183 ~d~lkk~n~~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~  222 (368)
                      ..-||..|..|-.-|+.|+.+|-.+|.||.|+.+=+++--
T Consensus        13 ~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqHg   52 (58)
T 3a2a_A           13 LLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQHG   52 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4678999999999999999999999999999999887643

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=89.48  E-value=0.067  Score=52.58  Aligned_cols=17  Identities=35%  Similarity=1.020  Sum_probs=0.0

Q ss_pred             CCCCcccccchHHHhhh
Q 040121           44 PNKPYRICDNCFSKLRK   60 (368)
Q Consensus        44 ~~kpvRVC~~C~~~L~~   60 (368)
                      ..+++|||+.||..|.+
T Consensus       416 ~~~~~rvC~~C~~~l~~  432 (434)
T 3mpx_A          416 KDRMAKVCDGCFGELKK  432 (434)
T ss_dssp             -----------------
T ss_pred             CCCcCEecHHHHHHHHh
Confidence            46899999999999864

>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=89.38  E-value=0.19  Score=38.26  Aligned_cols=26  Identities=27%  Similarity=0.528  Sum_probs=21.6

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCC
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSS   30 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sC   30 (368)
                      .|..|++..+ |+  ...|| ||.+||..+
T Consensus        17 rC~~C~kkvg-l~--~f~Cr-Cg~~FC~~H   42 (64)
T 1wfh_A           17 RCTVCRKRVG-LT--GFMCR-CGTTFCGSH   42 (64)
T ss_dssp             CCTTTCCCCC-TT--CEECS-SSCEECTTT
T ss_pred             cChhhCCccC-cc--CEEee-cCCEecccc
Confidence            3899999888 65  48895 999999865

>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=88.80  E-value=0.21  Score=39.06  Aligned_cols=25  Identities=24%  Similarity=0.519  Sum_probs=21.4

Q ss_pred             CCCCCCCCCcccccccccccCCceeeCCC
Q 040121            2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSS   30 (368)
Q Consensus         2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sC   30 (368)
                      |..|++..+ ++.  ..|| ||.+||..+
T Consensus        28 C~~CrKkvg-L~g--f~Cr-Cg~~FCs~H   52 (74)
T 1wfl_A           28 CFMCRKKVG-LTG--FDCR-CGNLFCGLH   52 (74)
T ss_dssp             CSSSCCBCG-GGC--EECT-TSCEECSSS
T ss_pred             ChhhCCccc-ccC--eecC-CCCEechhc
Confidence            899999988 653  8899 999999865

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=88.00  E-value=0.11  Score=47.46  Aligned_cols=16  Identities=44%  Similarity=1.130  Sum_probs=14.4

Q ss_pred             CCCcccccchHHHhhh
Q 040121           45 NKPYRICDNCFSKLRK   60 (368)
Q Consensus        45 ~kpvRVC~~C~~~L~~   60 (368)
                      .+++|||+.||..|+.
T Consensus       204 ~~~~RvC~~C~~~l~~  219 (220)
T 1dvp_A          204 EKEVRVCDGCFAALQR  219 (220)
T ss_dssp             EEEEEECHHHHHHHHH
T ss_pred             CCCCEeCHHHHHHHhc
Confidence            6899999999999864

>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=87.61  E-value=0.29  Score=39.22  Aligned_cols=26  Identities=23%  Similarity=0.382  Sum_probs=21.5

Q ss_pred             CCCCCCCCCcccccccccccCCceeeCCC
Q 040121            2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSS   30 (368)
Q Consensus         2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sC   30 (368)
                      |..|++..+ |+. ..+|| ||.+||..+
T Consensus        28 C~~C~kkvg-l~~-~f~Cr-Cg~~FC~~H   53 (85)
T 1wff_A           28 CFLCGKKTG-LAT-SFECR-CGNNFCASH   53 (85)
T ss_dssp             CSSSCCBCS-SSS-CEECT-TCCEECTTT
T ss_pred             chhhCCeec-ccC-CeEcC-CCCEecccC
Confidence            889999988 642 48997 999999865

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=87.55  E-value=4  Score=33.05  Aligned_cols=54  Identities=11%  Similarity=0.165  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHH
Q 040121          192 RVGQEVENHTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKA-AKEVIKSLTAQL  246 (368)
Q Consensus       192 ~L~qEV~~L~~k~~~q~~elq~~~kk~~Ea~~lA~eEsaK~kA-AKEvIKSLTaQL  246 (368)
                      -+-+||.+|++|.++.+.+|.+++.++.+|....- |+.|... |--=+.+|+-.+
T Consensus        41 ~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe-e~ek~~~~aE~ev~~L~Rri   95 (101)
T 3u1c_A           41 QLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL-FAEENAAKAESEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            44556999999999999999999999999876654 4454443 555678887643

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=86.20  E-value=0.4  Score=36.48  Aligned_cols=26  Identities=23%  Similarity=0.485  Sum_probs=21.5

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCC
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSS   30 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sC   30 (368)
                      .|..|++..+ |+  ...| .||.+||..+
T Consensus        17 rC~~C~kkvg-l~--~f~C-rCg~~FC~~H   42 (64)
T 1wg2_A           17 RCFSCNKKVG-VM--GFKC-KCGSTFCGSH   42 (64)
T ss_dssp             SCTTTCCCCT-TS--CEEC-TTSCEECSSS
T ss_pred             cChhhCCccc-cc--CeEe-ecCCEecccC
Confidence            3899999888 65  4889 6999999865

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=85.01  E-value=0.47  Score=37.08  Aligned_cols=25  Identities=20%  Similarity=0.541  Sum_probs=21.2

Q ss_pred             CCCCCCCCCcccccccccccCCceeeCCC
Q 040121            2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSS   30 (368)
Q Consensus         2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sC   30 (368)
                      |..|++..+ |+  ...| .||.+||..+
T Consensus        28 C~~C~kkvg-L~--~f~C-rCg~~FCs~H   52 (74)
T 1wfp_A           28 CLSCNKKVG-VT--GFKC-RCGSTFCGTH   52 (74)
T ss_dssp             CSSSCCBCT-TT--CEEC-TTSCEECTTT
T ss_pred             chhhcCccc-cc--ceEe-ccCCEecccc
Confidence            899999988 66  5899 5999999864

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=84.28  E-value=3.6  Score=33.61  Aligned_cols=48  Identities=25%  Similarity=0.254  Sum_probs=35.2

Q ss_pred             HHHhHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 040121          202 RKAQLQEVELERTTKQ-LKEAIAIAGEETAKCKAAKEVIKSLTAQLKDM  249 (368)
Q Consensus       202 ~k~~~q~~elq~~~kk-~~Ea~~lA~eEsaK~kAAKEvIKSLTaQLKdM  249 (368)
                      .+....+.||+.++.. .+||-.|++++--.+-+++.=...|.+||+|.
T Consensus        47 ~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~   95 (97)
T 2eqb_B           47 EEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK   95 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3344455666665554 47888899988777777888888899999875

>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.83  E-value=0.76  Score=36.04  Aligned_cols=47  Identities=13%  Similarity=0.377  Sum_probs=38.6

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHH
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSK   57 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~   57 (368)
                      .|..|+.+|++|+.+---|+.|-+-+|..|--..          ..+.=.|..|+..
T Consensus        27 ~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~----------~~~~W~C~VC~k~   73 (76)
T 2csz_A           27 TCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE----------SNGTWRCKVCSGP   73 (76)
T ss_dssp             BCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC----------STTCEEEHHHHSS
T ss_pred             chhhhCccccccccCCCcCcccChhhcccccccC----------CCCCEEEeeCchh
Confidence            4899999999888999999999999999996441          1256788888864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	368
d1dvpa2	72	g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila me	2e-11
d1joca1	64	g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens)	2e-11
d1vfya_	67	g.50.1.1 (A:) vps27p protein {Baker's yeast (Sacch	1e-10
d1wfka_	88	g.50.1.1 (A:) Zinc finger FYVE domain containing p	6e-10
d1y02a2	51	g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger pro	8e-08
d1zbdb_	124	g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat	4e-07

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 72

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.0 bits (137), Expect = 2e-11
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 3  SGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60
            CR+ F    RK H+C N G VFC   ++K+           K  R+CD CF+ L++
Sbjct: 17 HRCRVEFTFTNRK-HHCRNCGQVFCGQCTAKQCPLPKY--GIEKEVRVCDGCFAALQR 71

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (136), Expect = 2e-11
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 4  GCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLR 59
           C   F+   R RH+C   G +FC   S+K  L     P+  KP R+CD CF+ L+
Sbjct: 13 ACGKGFSVTVR-RHHCRQCGNIFCAECSAKNAL----TPSSKKPVRVCDACFNDLQ 63

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.2 bits (130), Expect = 1e-10
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 4  GCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK 60
           C   F+   RK H+C + G VFC   SS       +     +P R+CD+CF     
Sbjct: 10 ICSKKFSLLNRK-HHCRSCGGVFCQEHSSNSIPLPDLG--IYEPVRVCDSCFEDYEF 63

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (127), Expect = 6e-10
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 4  GCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFH 63
          GC + F  FK+  + C N G  FC+   S     A +    N   ++C  C + L +   
Sbjct: 14 GCAVKFTLFKK-EYGCKNCGRAFCNGCLSFS---ALVPRAGNTQQKVCKQCHTILTRGSS 69

Query: 64 TDDSSHSS 71
           + S  S 
Sbjct: 70 DNASKWSP 77

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 8e-08
 Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 11/58 (18%)

Query: 4  GCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKA 61
           C   F N  RK+  C +    FC + SS+               R+C  C      A
Sbjct: 5  SCGAHFANTARKQT-CLDCKKNFCMTCSSQV----------GNGPRLCLLCQRFRATA 51

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.3 bits (109), Expect = 4e-07
 Identities = 7/54 (12%), Positives = 12/54 (22%), Gaps = 6/54 (11%)

Query: 5   CRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKL 58
           C             C +     C     + +       N   P  +C  C  + 
Sbjct: 54  CGEQLGMLGSASVVCEDCKKNVCTKCGVETS------NNRPHPVWLCKICLEQR 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d1joca1	64	Eea1 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1wfka_	88	Zinc finger FYVE domain containing protein 19 {Mou	99.62
d1dvpa2	72	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	99.62
d1vfya_	67	vps27p protein {Baker's yeast (Saccharomyces cerev	99.6
d1y02a2	51	Rififylin (FYVE-RING finger protein Sakura) {Human	99.35
d1zbdb_	124	Effector domain of rabphilin-3a {Rat (Rattus norve	98.71
d1wfla_	74	Zinc finger A20 domain containing protein 2 {Mouse	89.11
d1wfha_	64	Zinc finger A20 and AN1 domains containing protein	87.64
d1wffa_	85	ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus	87.15
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	84.91
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	81.6

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.8e-17  Score=124.92  Aligned_cols=55  Identities=36%  Similarity=0.794  Sum_probs=49.4

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhh
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK   60 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~   60 (368)
                      .|+.|+.+|+ +++||||||+||.|||..|+.++++++.    ...++|||+.||..|++
T Consensus        10 ~C~~C~~~F~-~~~rrHHCR~CG~v~C~~Cs~~~~~~~~----~~~~~RVC~~C~~~l~G   64 (64)
T d1joca1          10 NCMACGKGFS-VTVRRHHCRQCGNIFCAECSAKNALTPS----SKKPVRVCDACFNDLQG   64 (64)
T ss_dssp             BCTTTCCBCC-SSSCCEECTTTCCEECGGGSCEEECCTT----CSSCEEECHHHHHHTTC
T ss_pred             cCcCcCCccc-CCccccchhhhCCeecccccCCceecCC----CCCccEehHHHHHHhcC
Confidence            4999999999 8889999999999999999999887764    36899999999999864

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.1e-16  Score=127.75  Aligned_cols=58  Identities=26%  Similarity=0.556  Sum_probs=52.5

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhcc
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAF   62 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~   62 (368)
                      .|+.|+++|+ |++||||||+||+|||..|+.+++.++.++   ..++|||+.||..|....
T Consensus        11 ~C~~C~~~Fs-~~~rrhhCr~CG~vfC~~Cs~~~~~lp~~~---~~~~RVC~~C~~~l~~~~   68 (88)
T d1wfka_          11 RCYGCAVKFT-LFKKEYGCKNCGRAFCNGCLSFSALVPRAG---NTQQKVCKQCHTILTRGS   68 (88)
T ss_dssp             BCTTTCCBCC-SSSCEEECSSSCCEEETTTSCEEEEETTTT---SEEEEECHHHHHHHHHCC
T ss_pred             cCcccCchhc-cccccccccccChhhChHHhCCccccCCCC---CCCCeECHHHHHHHHhcc
Confidence            4999999999 889999999999999999999999887664   589999999999998753

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=3.5e-17  Score=126.14  Aligned_cols=57  Identities=33%  Similarity=0.803  Sum_probs=52.1

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhh
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRK   60 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~   60 (368)
                      .|.+|+.+|+ +++||||||+||.+||..|+.+++.+|.++  ..+|+|||+.||..|++
T Consensus        15 ~C~~C~~~F~-~~~rrhhCr~CG~~~C~~C~~~~~~lp~~~--~~~p~RVC~~C~~~l~~   71 (72)
T d1dvpa2          15 VCHRCRVEFT-FTNRKHHCRNCGQVFCGQCTAKQCPLPKYG--IEKEVRVCDGCFAALQR   71 (72)
T ss_dssp             BCTTTCCBCC-SSSCCEECTTTCCEECSTTSCEEEEEGGGT--EEEEEEECHHHHHHHHH
T ss_pred             ccccCCCccc-CccccccccccCCeeChhhhCCceECcccC--CCCCCEeCHHHHHHHHC
Confidence            4899999999 889999999999999999999999888775  36899999999999975

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=5.6e-17  Score=123.24  Aligned_cols=58  Identities=28%  Similarity=0.606  Sum_probs=52.0

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhc
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKA   61 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~   61 (368)
                      .|+.|+.+|+ +++||||||+||++||..|+.+++++|.++.  ..|+|||+.||+.+...
T Consensus         7 ~C~~C~~~F~-~~~rkhhCr~CG~~fC~~Cs~~~~~l~~~~~--~~p~RVC~~C~~~~~~~   64 (67)
T d1vfya_           7 ACMICSKKFS-LLNRKHHCRSCGGVFCQEHSSNSIPLPDLGI--YEPVRVCDSCFEDYEFI   64 (67)
T ss_dssp             BCTTTCCBCB-TTBCCEECTTTCCEECGGGSCEEEEEGGGTE--EEEEEECHHHHHHHHHH
T ss_pred             ccccCCCccc-CcccccccccCCCEecccccCCcEECcccCC--CCCcEeCHHHHHHHHHH
Confidence            4999999999 8899999999999999999999999887753  68999999999987654

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.1e-13  Score=99.96  Aligned_cols=48  Identities=21%  Similarity=0.403  Sum_probs=40.1

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhh
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLR   59 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~   59 (368)
                      .|+.|+.+|+ +++||||||.||++||..|+.+.          .++.|||+.||....
T Consensus         2 ~C~~C~~~F~-~~~rkhhCr~CG~~fC~~Cs~~~----------~~~~RvC~~C~~~r~   49 (51)
T d1y02a2           2 SCKSCGAHFA-NTARKQTCLDCKKNFCMTCSSQV----------GNGPRLCLLCQRFRA   49 (51)
T ss_dssp             CCTTTCCCCS-SGGGCEECTTTCCEECGGGEEC--------------CCEEHHHHHHHH
T ss_pred             CccccCCccc-CCccCcccccCCcccCccccCCC----------CCCCeECHhHhhHhh
Confidence            5999999999 88999999999999999998753          355699999998754

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=2.1e-09  Score=89.48  Aligned_cols=60  Identities=12%  Similarity=0.215  Sum_probs=48.1

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCcccccccCCCCCCCCcccccchHHHhhhccCCCC
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKTLKASMAPNPNKPYRICDNCFSKLRKAFHTDD   66 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~~~~~l~p~~~kpvRVC~~C~~~L~~~~e~~~   66 (368)
                      .|..|+.+|++++.++|||+.||.+||..|+....      +....++++|+.|+....-...++.
T Consensus        50 ~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~~~------~~~~~~~w~C~~C~k~re~~~~sg~  109 (124)
T d1zbdb_          50 RCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS------NNRPHPVWLCKICLEQREVWKRSGA  109 (124)
T ss_dssp             BCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECC------CSSSSCCEEEHHHHHHHHHHHHTSH
T ss_pred             cCcccCCcccCCCCCCCcCccCCcccccCCCCCcc------CCCCCCCEECccCcchHHHHHHccC
Confidence            49999999996678899999999999999985422      1246789999999998766655544

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.11  E-value=0.09  Score=39.25  Aligned_cols=26  Identities=23%  Similarity=0.497  Sum_probs=21.9

Q ss_pred             CCCCCCCCCcccccccccccCCceeeCCCC
Q 040121            2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSSS   31 (368)
Q Consensus         2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sCS   31 (368)
                      |..|++..+ ++.  ..|| ||.+||..+-
T Consensus        28 C~~C~KKl~-l~~--~~Cr-Cg~~FC~~HR   53 (74)
T d1wfla_          28 CFMCRKKVG-LTG--FDCR-CGNLFCGLHR   53 (74)
T ss_dssp             CSSSCCBCG-GGC--EECT-TSCEECSSSC
T ss_pred             ChhhCCccc-cee--eEcc-CCCEehhhcC
Confidence            899999999 653  7897 9999999764

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At2g36320
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.64  E-value=0.14  Score=37.24  Aligned_cols=27  Identities=26%  Similarity=0.506  Sum_probs=22.4

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCC
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSS   31 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCS   31 (368)
                      .|..|++..+ ++.  ..|| ||.+||..+-
T Consensus        17 RC~~C~KKl~-l~~--~~Cr-Cg~~FC~~HR   43 (64)
T d1wfha_          17 RCTVCRKRVG-LTG--FMCR-CGTTFCGSHR   43 (64)
T ss_dssp             CCTTTCCCCC-TTC--EECS-SSCEECTTTC
T ss_pred             cChhhCCCcc-cee--eecc-CCCEehhhcC
Confidence            3899999999 653  6897 9999999764

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.15  E-value=0.15  Score=39.00  Aligned_cols=27  Identities=22%  Similarity=0.365  Sum_probs=22.3

Q ss_pred             CCCCCCCCCcccccccccccCCceeeCCCC
Q 040121            2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSSS   31 (368)
Q Consensus         2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sCS   31 (368)
                      |..|++..+ ++. ...|| ||.+||..+-
T Consensus        28 C~~C~KKl~-l~~-~~~Cr-Cg~~FC~~HR   54 (85)
T d1wffa_          28 CFLCGKKTG-LAT-SFECR-CGNNFCASHR   54 (85)
T ss_dssp             CSSSCCBCS-SSS-CEECT-TCCEECTTTC
T ss_pred             ChhcCCeec-CCc-CeecC-CCCEehhhcC
Confidence            899999998 543 37897 9999998764

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.91  E-value=0.22  Score=37.05  Aligned_cols=26  Identities=19%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             CCCCCCCCCcccccccccccCCceeeCCCC
Q 040121            2 RSGCRLPFNNFKRKRHNCYNYGMVFCHSSS   31 (368)
Q Consensus         2 C~~C~~~F~~f~rRRHHCR~CG~VfC~sCS   31 (368)
                      |..|+++.+ ++.  .-|| ||.+||..+-
T Consensus        28 C~~C~KKl~-l~~--~~Cr-Cg~~FC~~HR   53 (74)
T d1wfpa_          28 CLSCNKKVG-VTG--FKCR-CGSTFCGTHR   53 (74)
T ss_dssp             CSSSCCBCT-TTC--EECT-TSCEECTTTC
T ss_pred             ChhcCCccC-CCc--eecC-CCChhhhccC
Confidence            899999998 653  6675 9999998764

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.60  E-value=0.41  Score=36.03  Aligned_cols=31  Identities=16%  Similarity=0.161  Sum_probs=23.7

Q ss_pred             CCCCCCCCCCcccccccccccCCceeeCCCCCccc
Q 040121            1 MRSGCRLPFNNFKRKRHNCYNYGMVFCHSSSSKKT   35 (368)
Q Consensus         1 ~C~~C~~~F~~f~rRRHHCR~CG~VfC~sCSs~~~   35 (368)
                      .|.+|...|.    .-..+..||.+||..|...+.
T Consensus        24 ~C~IC~~~~~----~pv~~~~CgH~fC~~Ci~~~~   54 (97)
T d1jm7b_          24 RCSRCTNILR----EPVCLGGCEHIFCSNCVSDCI   54 (97)
T ss_dssp             SCSSSCSCCS----SCBCCCSSSCCBCTTTGGGGT
T ss_pred             CCccCCchhh----cCceeCCCCCchhHHHHHHHH
Confidence            4899988665    234567899999999976643