Citrus Sinensis ID: 040192

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
Protein Sequence
MSVKMILSPVETWKCTKEAMLPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIRGSRERWEQLQWENQATKNAFIPCF
Secondary Structure (PSIPRED)
ccccccccEEccccEEcccccHHHHHHHHHcccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccccccccccccEEcccccccccccHHHcccccccEEEEcccccccccccccccccccccEEEEEccccccccccccccHHHHHcccccccccccccHHHHcccccccccccccccEEEccccccccccccccccccccEEEEEccccccccccccccccccEEEEccccccccccccccccccccccccccccEEccccccccccccccccccccccEEEEccccccccccccccccccccEEEEccHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHccHcHcHHHHHHHHHHHHHHHcccccccEEEEccccccccccHHHHHHHHHHHHHHcccHHHccccccccccEEEEEccccccccccHHHHHHccccEEEEcccccccccccHHHHHHHcHcEEEcccccHHHccHHHHHHHHccEEEccccccHHcccHHHHHHHHcccEEEEEcccccccccccccHHHHHHHHHHccccccccccccHHcccEEEEccccccEEEEEcccccccccccccccccccEEEEccccccccccHHHccccccEEEEcccHcHHHHHcHccccccccccccHHccEEEEcccHHHHHccccccccccccEEEEcccccHcccccccccccccEEEEEccHHHHHHcccccHHHHHHccccc
Coil and Loop (DISEMBL)
msvkmilspvetwkctkeamlprmssdieEEKEEHLVYAgaglsetpdvrkWEKNVRRLSLMENQIEnlsevptcpylrtlflnnnaplrridsgffqsmprlnvlnlsgairlysfplGISKLISLqhldlsntgiaELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFgsgysysdgmigngefeqlcgfrrsksldvsALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKelkdltflifapnlksievdSCYALEEivsdvpevmmgnlnpfAQFHFLCFsylpnlksiyrkplpfphlkemkvihclklkklpldsnrakERKIVIRGSRERWEQLQWENQATKNAFIPCF
Flexible Loop (DISEMBL)
msvkmilspvetwkctkeamlPRMSSDIEEEKEEHLVYagaglsetpdvrkWEKNVRRLSLMENQIenlsevptcpyLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVsaladlkrlnrLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLklkklpldsnrakerkIVIRgsrerweqlqwenqatknafipcf
Low Complexity Region (SEG)
MSVKMILSPVETWKCTKEAMLPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIRGSRERWEQLQWENQATKNAFIPCF
Disordered region (IsUnstruct)
*********VETWKC********************LVYAGAGL****DVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSN*AKERKIVIRGSRERWEQLQWEN***********
Disordered Region (DISOPRED)
**VKMILSPVETWKCTKEAMLPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPR*LISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDV********NPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKL*************IRGSRERWEQLQWENQATKNAFIPCF
Disordered Region (DISEMBL)
MSVKMILSPVETWKCTKEAMLPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIRGSRERWEQLQWENQATKNAFIPCF
Disordered Region (DISPRO)
MSVKMILSPVETWKCTKEAMLPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIRGSRERWEQLQWENQATKNAFIPCF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVKMILSPVETWKCTKEAMLPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIRGSRERWEQLQWENQATKNAFIPCF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	386	2.2.26 [Sep-21-2011]
P60838	894	Probable disease resistan	yes	no	0.919	0.397	0.367	4e-50
Q8L3R3	885	Disease resistance protei	no	no	0.909	0.396	0.36	3e-45
Q9C8T9	898	Putative disease resistan	no	no	0.898	0.386	0.349	3e-44
Q9SH22	884	Probable disease resistan	no	no	0.922	0.402	0.348	8e-44
Q9SI85	893	Probable disease resistan	no	no	0.891	0.385	0.334	8e-43
O64973	889	Disease resistance protei	no	no	0.917	0.398	0.347	3e-42
Q940K0	889	Probable disease resistan	no	no	0.971	0.421	0.334	3e-42
O82484	892	Putative disease resistan	no	no	0.922	0.399	0.345	1e-41
P60839	884	Probable disease resistan	no	no	0.911	0.398	0.345	1e-40
Q8RXS5	888	Probable disease resistan	no	no	0.917	0.398	0.340	3e-40

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  199 bits (505), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 148/403 (36%), Positives = 212/403 (52%), Gaps = 48/403 (11%)

Query: 24  MSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFL 83
           ++SD+ E KE  +V  G GL E P V+ W  +VRR+SLMEN+IE LS  P C  L TLFL
Sbjct: 487 IASDLGEHKERCIVQVGVGLREVPKVKNW-SSVRRMSLMENEIEILSGSPECLELTTLFL 545

Query: 84  NNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE 143
             N  L  I   FF+ +P L VL+LSG   L   P  ISKL+SL++LDLS T I  LP  
Sbjct: 546 QKNDSLLHISDEFFRCIPMLVVLDLSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRLPVG 605

Query: 144 LNALVNLTCLNLEETWRLTVIP--------RRL--------------------------- 168
           L  L  L  L L+   RL  I         R+L                           
Sbjct: 606 LQELKKLRYLRLDYMKRLKSISGISNISSLRKLQLLQSKMSLDMSLVEELQLLEHLEVLN 665

Query: 169 ISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAEC 228
           IS  SSL V ++  +       ++   +   L G +   S  V  L D+  LN++ I +C
Sbjct: 666 ISIKSSLVVEKLLNAPR-----LVKCLQILVLRGVQEESS-GVLTLPDMDNLNKVIIRKC 719

Query: 229 YGLAELKMDYKSVVQNTGQS---FVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSC 285
            G+ E+K++ K++  ++ +S      H+L    IS C  LKDLT+L+FAPNL S+EV   
Sbjct: 720 -GMCEIKIERKTLSLSSNRSPKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVLDS 778

Query: 286 YALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLK 345
             +E I++    + M  + PF +   L    L  L+SIY +PL FP LK + +  C +L+
Sbjct: 779 ELVEGIINQEKAMTMSGIIPFQKLESLRLHNLAMLRSIYWQPLSFPCLKTIHITKCPELR 838

Query: 346 KLPLDSNRA-KERKIVIRGSRERW-EQLQWENQATKNAFIPCF 386
           KLPLDS  A ++ ++VI+   E W E+++W+N+AT+  F+P F
Sbjct: 839 KLPLDSEIAIRDEELVIKYQEEEWLERVEWDNEATRLRFLPFF 881

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  182 bits (462), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 144/400 (36%), Positives = 201/400 (50%), Gaps = 49/400 (12%)

Query: 26  SDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNN 85
           SD+ + KE  +V AG GL E P+V  W + V+R+SLM N  E +   P C  L TLFL N
Sbjct: 489 SDLGKHKERCIVQAGIGLDELPEVENW-RAVKRMSLMNNNFEKILGSPECVELITLFLQN 547

Query: 86  NAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELN 145
           N  L  I   FF+ MP L VL+LS    L   P  IS+L+SLQ+LDLS T I  LP  L+
Sbjct: 548 NYKLVDISMEFFRCMPSLAVLDLSENHSLSELPEEISELVSLQYLDLSGTYIERLPHGLH 607

Query: 146 ALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGM-------------- 191
            L  L  L LE T RL  I    IS  SSL  LR+  S  +   G+              
Sbjct: 608 ELRKLVHLKLERTRRLESISG--ISYLSSLRTLRLRDSKTTLDTGLMKELQLLEHLELIT 665

Query: 192 --IGNGEFEQLCGFRR-----------------SKSLDVSALADLKRLNRLKIAECYGLA 232
             I +G   +L  + R                  +S+ V  L  +  L  + I  C+ + 
Sbjct: 666 TDISSGLVGELFCYPRVGRCIQHIYIRDHWERPEESVGVLVLPAIHNLCYISIWNCW-MW 724

Query: 233 EL---KMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALE 289
           E+   K  +K  + N      F +L   +I  C  LKDLT+L+FAPNL ++ V  C  LE
Sbjct: 725 EIMIEKTPWKKNLTNPN----FSNLSNVRIEGCDGLKDLTWLLFAPNLINLRVWGCKHLE 780

Query: 290 EIVS--DVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVI-HCLKLKK 346
           +I+S      V+   + PF +   L    L  LKSIY   LPF  L+ + ++ +C KL+K
Sbjct: 781 DIISKEKAASVLEKEILPFQKLECLNLYQLSELKSIYWNALPFQRLRCLDILNNCPKLRK 840

Query: 347 LPLDSNR-AKERKIVIRGSRERW-EQLQWENQATKNAFIP 384
           LPLDS    K  + VI+   ++W E+++WE++AT+  F+P
Sbjct: 841 LPLDSKSVVKVEEFVIKYKEKKWIERVEWEDEATQYRFLP 880

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  179 bits (455), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 140/401 (34%), Positives = 199/401 (49%), Gaps = 54/401 (13%)

Query: 24  MSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFL 83
           ++SD+ ++ E  +V A  GL E   V  W   VRR+SLM+N I +L     C  L TL L
Sbjct: 486 IASDLGKQNEAFIVRASVGLREILKVENWNV-VRRMSLMKNNIAHLDGRLDCMELTTLLL 544

Query: 84  NNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE 143
            +   L +I S FF SMP+L VL+LSG   L   P GIS+L+SLQ+L+LS+TGI  LPK 
Sbjct: 545 QS-THLEKISSEFFNSMPKLAVLDLSGNYYLSELPNGISELVSLQYLNLSSTGIRHLPKG 603

Query: 144 LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGE-FEQL-- 200
           L  L  L  L LE T +L  +    IS   +L VL++ GS Y++    +   E  E L  
Sbjct: 604 LQELKKLIHLYLERTSQLGSMVG--ISCLHNLKVLKLSGSSYAWDLDTVKELEALEHLEV 661

Query: 201 -------CGFRRSKSLDVSAL-------------------------ADLKRLNRLKIAEC 228
                  C     + L    L                           + RL    I  C
Sbjct: 662 LTTTIDDCTLGTDQFLSSHRLMSCIRFLKISNNSNRNRNSSRISLPVTMDRLQEFTIEHC 721

Query: 229 YGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYAL 288
           +  +E+KM         G+   F SL +  +S C+ L++LTFL+FAPNLK + V S   L
Sbjct: 722 HT-SEIKM---------GRICSFSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQL 771

Query: 289 EEIVSD--VPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKK 346
           E+I++     +     + PF + + L    L  LK+IY  PLPFP L+++ V+ C  LKK
Sbjct: 772 EDIINKEKAHDGEKSGIVPFPKLNELHLYNLRELKNIYWSPLPFPCLEKINVMGCPNLKK 831

Query: 347 LPLDSNRAKE--RKIVIRGSRERW-EQLQWENQATKNAFIP 384
           LPLDS   K     ++I      W  +++WE++ATK  F+ 
Sbjct: 832 LPLDSKSGKHGGNGLIITHREMEWITRVEWEDEATKTRFLA 872

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score =  178 bits (451), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 138/396 (34%), Positives = 204/396 (51%), Gaps = 40/396 (10%)

Query: 24  MSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFL 83
           ++S++  +KE  +V AG G+ E P ++ W   VRR+SLMEN+I +L     C  L TL L
Sbjct: 486 IASELGIQKEAFIVRAGVGVREIPKIKNW-NVVRRMSLMENKIHHLVGSYECMELTTLLL 544

Query: 84  NNN------APLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGI 137
                    + L+ I S FF  MP+L VL+LS    L+  P  IS L+SL++L+L  T I
Sbjct: 545 GKREYGSIRSQLKTISSEFFNCMPKLAVLDLSHNKSLFELPEEISNLVSLKYLNLLYTEI 604

Query: 138 AELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEF 197
           + LPK +  L  +  LNLE T +L  I    ISS  +L VL++F S   +    +   E 
Sbjct: 605 SHLPKGIQELKKIIHLNLEYTRKLESITG--ISSLHNLKVLKLFRSRLPWDLNTV--KEL 660

Query: 198 EQLCGFR-RSKSLDVSA---LADLKRLNRLKIAECYG-------------------LAEL 234
           E L      + ++D  A   L+  + L+  ++ E YG                   L E 
Sbjct: 661 ETLEHLEILTTTIDPRAKQFLSSHRLLSHSRLLEIYGSSVSSLNRHLESLSVSTDKLREF 720

Query: 235 KMDYKSVVQ-NTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVS 293
           ++   S+ +   G    F SL    I  C+ L++LTFLIFAP ++S+ V     LE+I++
Sbjct: 721 QIKSCSISEIKMGGICNFLSLVDVNIFNCEGLRELTFLIFAPKIRSLSVWHAKDLEDIIN 780

Query: 294 D--VPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDS 351
           +    E     + PF + +FL    LP LK IY +PLPF  L+E+ +  C  L+KLPLDS
Sbjct: 781 EEKACEGEESGILPFPELNFLTLHDLPKLKKIYWRPLPFLCLEEINIRECPNLRKLPLDS 840

Query: 352 NRAK--ERKIVIRGSRERW-EQLQWENQATKNAFIP 384
              K  E   +IR    RW E ++W ++ATK  F+P
Sbjct: 841 TSGKQGENGCIIRNKDSRWFEGVKWADEATKKRFLP 876

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score =  174 bits (442), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 137/410 (33%), Positives = 203/410 (49%), Gaps = 66/410 (16%)

Query: 24  MSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFL 83
           ++S++  +KE  +V AG G+ E P V+ W   VRR+SLM N+I +L     C  L TL L
Sbjct: 486 IASELGIQKEAFIVRAGVGVREIPKVKNWNV-VRRMSLMGNKIHHLVGSYECMELTTLLL 544

Query: 84  NNN--------APLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNT 135
                      + ++ I S FF  MP+L VL+LS    L+  P  IS L+SL++L+LS+T
Sbjct: 545 GEGEYGSIWRWSEIKTISSEFFNCMPKLAVLDLSHNQSLFELPEEISNLVSLKYLNLSHT 604

Query: 136 GIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY-------- 187
           GI  L K +  L  +  LNLE T +L  I    ISS  +L VL+++GS   +        
Sbjct: 605 GIRHLSKGIQELKKIIHLNLEHTSKLESIDG--ISSLHNLKVLKLYGSRLPWDLNTVKEL 662

Query: 188 ----------------------SDGMIGNGEFEQLCGF------RRSKSLDVSALADLKR 219
                                 S  ++      Q+ G       R+ +SL VS      +
Sbjct: 663 ETLEHLEILTTTIDPRAKQFLSSHRLMSRSRLLQIFGSNIFSPDRQLESLSVST----DK 718

Query: 220 LNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKS 279
           L   +I  C  ++E+KM         G    F SL    I  C+ L++LTFLIFAP L+S
Sbjct: 719 LREFEIM-CCSISEIKM---------GGICNFLSLVDVTIYNCEGLRELTFLIFAPKLRS 768

Query: 280 IEVDSCYALEEIVSD--VPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMK 337
           + V     LE+I+++    E     + PF +  +L    LP LK+IYR+PLPF  L+++ 
Sbjct: 769 LSVVDAKDLEDIINEEKACEGEDSGIVPFPELKYLNLDDLPKLKNIYRRPLPFLCLEKIT 828

Query: 338 VIHCLKLKKLPLDSNRAK--ERKIVIRGSRERW-EQLQWENQATKNAFIP 384
           +  C  L+KLPLDS   K  E   +I     RW + ++W ++ATK  F+P
Sbjct: 829 IGECPNLRKLPLDSRSGKQGENGCIIHYKDSRWLKGVKWADEATKKRFLP 878

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  172 bits (437), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 139/400 (34%), Positives = 200/400 (50%), Gaps = 46/400 (11%)

Query: 24  MSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFL 83
           +SSD+ ++KE+ +V AG GL E P V+ W   VR++SLM N+IE + +   C  L TLFL
Sbjct: 488 ISSDLGKQKEKCIVRAGVGLREVPKVKDW-NTVRKISLMNNEIEEIFDSHECAALTTLFL 546

Query: 84  NNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE 143
             N  ++ I + FF+ MP L VL+LS    L   P  IS+L SL++ +LS T I +LP  
Sbjct: 547 QKNDVVK-ISAEFFRCMPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTCIHQLPVG 605

Query: 144 LNALVNLTCLNLEET------------WRLTVIPRR---------LISSFSSLHVLRIFG 182
           L  L  L  LNLE              W L  +  R         L+     L  L +  
Sbjct: 606 LWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSRLLLDMSLVKELQLLEHLEVIT 665

Query: 183 SGYSYS------------DGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYG 230
              S S               I   +F+ L    + +S+ V  L  +  L +L I  C G
Sbjct: 666 LDISSSLVAEPLLCSQRLVECIKEVDFKYL----KEESVRVLTLPTMGNLRKLGIKRC-G 720

Query: 231 LAELKMDYKSVVQNTGQSFV---FHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYA 287
           + E+K++  +   +  +S     F +L +  I+ C  LKDLT+L+FAPNL  +EV     
Sbjct: 721 MREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKE 780

Query: 288 LEEIVSD-VPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKK 346
           +E+I+S+   E     + PF +   L    L  LK IY K L FP LK + V  C KL+K
Sbjct: 781 VEDIISEEKAEEHSATIVPFRKLETLHLFELRGLKRIYAKALHFPCLKVIHVEKCEKLRK 840

Query: 347 LPLDSNR--AKERKIVIRGSRERWEQLQWENQATKNAFIP 384
           LPLDS    A E  ++  G RE  E+++WE+QAT+  F+P
Sbjct: 841 LPLDSKSGIAGEELVIYYGEREWIERVEWEDQATQLRFLP 880

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score =  172 bits (437), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 139/416 (33%), Positives = 214/416 (51%), Gaps = 41/416 (9%)

Query: 6   ILSPVETWKCTKEAMLPRMS----SDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSL 61
           +L+ V T+ C    ++  M+    SD  ++KE  +V AG GL E P V+ W   VR++SL
Sbjct: 460 LLTKVGTYYCVMHDVVREMALWIASDFGKQKENFVVQAGVGLHEIPKVKDW-GAVRKMSL 518

Query: 62  MENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGI 121
           M+N IE ++    C  L TLFL +N  L+ +   F + M +L VL+LS        P  I
Sbjct: 519 MDNDIEEITCESKCSELTTLFLQSNK-LKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQI 577

Query: 122 SKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIP--------RRLISSFS 173
           S L+SLQ LDLSNT I  +P  L  L  LT L+L  T RL  I         R L    S
Sbjct: 578 SGLVSLQFLDLSNTSIEHMPIGLKELKKLTFLDLTYTDRLCSISGISRLLSLRLLRLLGS 637

Query: 174 SLH----VLR-------IFGSGYSYSDGMIGNGE-----FEQLC--GFRRSKSLDVSALA 215
            +H    VL+       +     + S  +I   +        LC  GF + K  D+S LA
Sbjct: 638 KVHGDASVLKELQQLQNLQELAITVSAELISLDQRLAKLISNLCIEGFLQ-KPFDLSFLA 696

Query: 216 DLKRLNRLKIAECYGLAELKM----DYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFL 271
            ++ L+ L++   Y  +E+K        S ++   +   F +L + +I  C  +KDLT++
Sbjct: 697 SMENLSSLRVENSY-FSEIKCRESETESSYLRINPKIPCFTNLSRLEIMKCHSMKDLTWI 755

Query: 272 IFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFP 331
           +FAPNL  + ++    + EI++      + ++ PF +  +L    LP L+SIY  PLPFP
Sbjct: 756 LFAPNLVVLLIEDSREVGEIINKEKATNLTSITPFLKLEWLILYNLPKLESIYWSPLPFP 815

Query: 332 HLKEMKVIHCLKLKKLPLDS---NRAKERKIVIRGSRERWEQLQWENQATKNAFIP 384
            L  M V +C KL+KLPL++   ++ +E +I +    E+  +L+WE+  TKN F+P
Sbjct: 816 VLLTMDVSNCPKLRKLPLNATSVSKVEEFEIHMYPPPEQENELEWEDDDTKNRFLP 871

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  171 bits (433), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 138/400 (34%), Positives = 196/400 (49%), Gaps = 44/400 (11%)

Query: 26  SDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNN 85
           SD+ + KE  +V AG+GL + P V  W   VRRLSLM N IE +S  P CP L TLFL  
Sbjct: 487 SDLGKNKERCIVQAGSGLRKVPKVEDW-GAVRRLSLMNNGIEEISGSPECPELTTLFLQE 545

Query: 86  NAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELN 145
           N  L  I   FF+ M +L VL+LS   +L   P  IS+L++L++LDLS+T I  LP  L 
Sbjct: 546 NKSLVHISGEFFRHMRKLVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEGLPACLQ 605

Query: 146 ALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGY-----------------SYS 188
            L  L  LNLE   RL  I    IS  SSL  L +  S                     +
Sbjct: 606 DLKTLIHLNLECMRRLGSIAG--ISKLSSLRTLGLRNSNIMLDVMSVKELHLLEHLEILT 663

Query: 189 DGMIGNGEFEQL--CGFRRSKSLDVSA---LADLKRLNRLKIAECYGLAELKM------- 236
             ++     EQ+   G   +   +VS    + D ++  +L++     L  L M       
Sbjct: 664 IDIVSTMVLEQMIDAGTLMNCMQEVSIRCLIYDQEQDTKLRLPTMDSLRSLTMWNCEISE 723

Query: 237 -DYKSVVQNTG-QSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSD 294
            + + +  NT   S  F +L +  I  C  LKDLT+L+FAPN+  + ++    L+E++S 
Sbjct: 724 IEIERLTWNTNPTSPCFFNLSQVIIHVCSSLKDLTWLLFAPNITYLMIEQLEQLQELISH 783

Query: 295 VP--------EVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKK 346
                     +  +  + PF +   L  S LP LKSIY   L FP L  + V  C KL+K
Sbjct: 784 AKATGVTEEEQQQLHKIIPFQKLQILHLSSLPELKSIYWISLSFPCLSGIYVERCPKLRK 843

Query: 347 LPLDSNRAK-ERKIVIRGSRERW-EQLQWENQATKNAFIP 384
           LPLDS      +K V++     W E ++W+++ATK  F+P
Sbjct: 844 LPLDSKTGTVGKKFVLQYKETEWIESVEWKDEATKLHFLP 883

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/396 (34%), Positives = 204/396 (51%), Gaps = 44/396 (11%)

Query: 24  MSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFL 83
           ++SD+ + K+  +V AG  L+E P V+ W K V R+SL+ N+I+ +   P CP L TLFL
Sbjct: 489 IASDLRKHKDNCIVRAGFRLNEIPKVKDW-KVVSRMSLVNNRIKEIHGSPECPKLTTLFL 547

Query: 84  NNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE 143
            +N  L  I   FF+SMPRL VL+LS  + L   P  IS+L+SL++LDLS + I  LP  
Sbjct: 548 QDNRHLVNISGEFFRSMPRLVVLDLSWNVNLSGLPDQISELVSLRYLDLSYSSIGRLPVG 607

Query: 144 LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFG-----------------SGYS 186
           L  L  L  LNLE    L  +    I   S+L  +R+                   +   
Sbjct: 608 LLKLKKLMHLNLESMLCLESVSG--IDHLSNLKTVRLLNLRMWLTISLLEELERLENLEV 665

Query: 187 YSDGMIGNGEFEQ-LCGFR-------------RSKSLDVSALADLKRLNRLKIAECYGLA 232
            +  +I +   EQ LC  R               +S+ +  L  +  L  + I  C G+ 
Sbjct: 666 LTIEIISSSALEQLLCSHRLVRCLQKVSVKYLDEESVRILTLPSIGDLREVFIGGC-GMR 724

Query: 233 ELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIV 292
           ++ ++  + +     S  F +L K  I+ C  LKDLT+L+FAPNL  + V +   +EEI+
Sbjct: 725 DIIIERNTSL----TSPCFPNLSKVLITGCNGLKDLTWLLFAPNLTHLNVWNSRQIEEII 780

Query: 293 SDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIH-CLKLKKLPLDS 351
           S   +    ++ PF +  +L    LP LKSIY  PLPFP L ++ V + C KL KLPLDS
Sbjct: 781 SQ-EKASTADIVPFRKLEYLHLWDLPELKSIYWNPLPFPCLNQINVQNKCRKLTKLPLDS 839

Query: 352 NR---AKERKIVIRGSRERWEQLQWENQATKNAFIP 384
                A E  ++  G  E  E+++WE++AT+  F+P
Sbjct: 840 QSCIVAGEELVIQYGDEEWKERVEWEDKATRLRFLP 875

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  166 bits (419), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 135/396 (34%), Positives = 196/396 (49%), Gaps = 42/396 (10%)

Query: 24  MSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFL 83
           ++SD  ++KE  +V AG      P++ KW K  RR+SLM N IE++ + P  P L TL L
Sbjct: 482 IASDFGKQKENFIVQAGLQSRNIPEIEKW-KVARRVSLMFNNIESIRDAPESPQLITLLL 540

Query: 84  NNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE 143
             N  L  I S FF+ MP L VL+LS    L   P  IS+ +SLQ+L LS T I   P  
Sbjct: 541 RKNF-LGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAG 599

Query: 144 LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGY------------------ 185
           L  L  L  LNLE T  +  I    IS  +SL VLR+F SG+                  
Sbjct: 600 LVELRKLLYLNLEYTRMVESICG--ISGLTSLKVLRLFVSGFPEDPCVLNELQLLENLQT 657

Query: 186 --------SYSDGMIGNGEFEQLCGFRRSKSLD-----VSALADLKRLNRLKIAECYGLA 232
                   S  +  + N          R ++L+     +S +A +  L  L  A+   + 
Sbjct: 658 LTITLGLASILEQFLSNQRLASCTRALRIENLNPQSSVISFVATMDSLQELHFADS-DIW 716

Query: 233 ELKMDYKSVVQN----TGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYAL 288
           E+K+     V      T  +F F +L +  + +C  L+DLT+LIFAPNL  + V S   L
Sbjct: 717 EIKVKRNETVLPLHIPTTTTF-FPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDL 775

Query: 289 EEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLP 348
           +E+++   +    NL PF +   L    +  LK I+R PLPFP L+++ V  C +L+KLP
Sbjct: 776 KEVINK-EKAEQQNLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKILVNGCSELRKLP 834

Query: 349 LDSNRAKERKIVIRGSRERWEQLQWENQATKNAFIP 384
           L+        +VI   ++  E L+WE++ATK  F+P
Sbjct: 835 LNFTSVPRGDLVIEAHKKWIEILEWEDEATKARFLP 870

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	386
24461861	890	NBS-LRR type disease resistance protein	0.922	0.4	0.546	1e-107
24461866	890	NBS-LRR type disease resistance protein	0.919	0.398	0.552	1e-106
24461864	899	NBS-LRR type disease resistance protein	0.911	0.391	0.538	1e-102
24461865	892	NBS-LRR type disease resistance protein	0.919	0.397	0.539	2e-97
24461863	889	NBS-LRR type disease resistance protein	0.919	0.399	0.483	1e-88
225443158	903	PREDICTED: probable disease resistance p	0.911	0.389	0.417	5e-65
224122896	820	cc-nbs-lrr resistance protein [Populus t	0.909	0.428	0.390	1e-64
225442867	893	PREDICTED: probable disease resistance p	0.930	0.402	0.387	2e-61
147852651	882	hypothetical protein VITISV_017542 [Viti	0.930	0.407	0.402	2e-60
298204683	613	unnamed protein product [Vitis vinifera]	0.873	0.549	0.441	4e-60

>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/408 (54%), Positives = 271/408 (66%), Gaps = 52/408 (12%)

Query: 24  MSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFL 83
           ++ D E+EKE +LVYAGAGL E PDV +WEK +RRLSLMENQIENLSEVPTCP+L TLFL
Sbjct: 486 LACDAEKEKENYLVYAGAGLREAPDVIEWEK-LRRLSLMENQIENLSEVPTCPHLLTLFL 544

Query: 84  NNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE 143
           N++  L RI+S F QSM RL VLNLS  + L   PLGISKL+SL++LDLS + I+E+P+E
Sbjct: 545 NSDDILWRINSDFLQSMLRLKVLNLSRYMGLLVLPLGISKLVSLEYLDLSTSLISEIPEE 604

Query: 144 LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGY-SYSDGMIGNGEFEQ--- 199
           L ALVNL CLNLE T RL  IP +LIS+FS LHVLR+FG+ Y SY +  I +  F     
Sbjct: 605 LKALVNLKCLNLEYTGRLLKIPLQLISNFSRLHVLRMFGNAYFSYGNYPIESVLFGGGEL 664

Query: 200 -----------------------------------------LCGFRRSKSLDVSALADLK 218
                                                    L  F+ S S+DVS LADLK
Sbjct: 665 LVEELLGLKHLEVLSLTLGSSRALQSFLTSHMLRSCTRAMLLQDFQGSTSVDVSGLADLK 724

Query: 219 RLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLK 278
           RL RL+I++CY L ELK+DY   VQ  G    FHSL+ F+++YC +LKDLT L+  PNLK
Sbjct: 725 RLKRLRISDCYELVELKIDYAGEVQRYG----FHSLQSFEVNYCSKLKDLTLLVLIPNLK 780

Query: 279 SIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKV 338
           SIEV  C A+EEI+S V E   GN N FA+  +L    LPNLKSIY KPLPFP L+E+ V
Sbjct: 781 SIEVTDCEAMEEIIS-VGE-FAGNPNAFAKLQYLGIGNLPNLKSIYWKPLPFPCLEELTV 838

Query: 339 IHCLKLKKLPLDSNRAKERKIVIRGSRERWEQLQWENQATKNAFIPCF 386
             C +LKKLPLDSN AKE KIVIRG+   W  LQWE++AT+NAF+ CF
Sbjct: 839 SDCYELKKLPLDSNSAKEHKIVIRGAANWWRNLQWEDEATQNAFLSCF 886

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/413 (55%), Positives = 267/413 (64%), Gaps = 58/413 (14%)

Query: 24  MSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFL 83
           ++  IE+EK+  LVYAG GL E PDV  WEK  RRLSLM NQI NLSEV TCP+L TLFL
Sbjct: 484 IACAIEKEKDNFLVYAGVGLIEAPDVSGWEK-ARRLSLMHNQITNLSEVATCPHLLTLFL 542

Query: 84  NNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE 143
           N N  L+ I + FF+ MP L VLNL+ +  L + P GISKL+SLQHLDLS + I ELP E
Sbjct: 543 NENE-LQMIHNDFFRFMPSLKVLNLADS-SLTNLPEGISKLVSLQHLDLSKSSIEELPLE 600

Query: 144 LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDG------MIGNGEF 197
           L ALVNL CLNLE TW LT IPR+LIS+ S LHVLR+F + +S  D       + G GE 
Sbjct: 601 LKALVNLKCLNLEYTWSLTTIPRQLISNLSRLHVLRMFAASHSAFDRASEDSILFGGGEL 660

Query: 198 --EQLCG-------------------------------------FRRSKSLDVSALADLK 218
             E+L G                                     F  S SL+VSALADLK
Sbjct: 661 IVEELLGLKYLEVISFTLRSSHGLQSFLSSHKLRSCTRALLLQCFNDSTSLEVSALADLK 720

Query: 219 RLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLK 278
           +LNRL I EC  L ELKMDY   VQ     FVFHSLKK +I  C +LKDLTFL+FAPNL+
Sbjct: 721 QLNRLWITECKKLEELKMDYTREVQQ----FVFHSLKKVEILACSKLKDLTFLVFAPNLE 776

Query: 279 SIEVDSCYALEEIVS-----DVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHL 333
           SIE+  C A+EE+VS     +VPEV + NLNPFA+   L      NLKSIY KPLPFPHL
Sbjct: 777 SIELMGCPAMEEMVSMGKFAEVPEV-VANLNPFAKLQNLKLFGATNLKSIYWKPLPFPHL 835

Query: 334 KEMKVIHCLKLKKLPLDSNRAKERKIVIRGSRERWEQLQWENQATKNAFIPCF 386
           K M   HC KLKKLPLDSN A+ER IVI G+R  WEQL+W ++AT+NAF+PCF
Sbjct: 836 KSMSFSHCYKLKKLPLDSNSARERNIVISGTRRWWEQLEWVDEATRNAFLPCF 888

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/412 (53%), Positives = 265/412 (64%), Gaps = 60/412 (14%)

Query: 25  SSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLN 84
           + D E++KE +LVY GAGL+E P+VR+WE N +RLSLME QI NLSEVPTC +L TLFL 
Sbjct: 494 TEDTEKKKENYLVYEGAGLTEAPNVREWE-NAKRLSLMETQIRNLSEVPTCLHLLTLFLV 552

Query: 85  NNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKEL 144
            N  L  I   FF+SMP L VLNLSGA R+ SFPLG+S L+SLQHLDLS T I ELPKEL
Sbjct: 553 FNEELEMITGDFFKSMPCLKVLNLSGARRMSSFPLGVSVLVSLQHLDLSGTAIQELPKEL 612

Query: 145 NALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSG-------------YSYSDGM 191
           NAL NL  LNL++T  L  IPR+LIS FS L VLR+FG G             +S  D +
Sbjct: 613 NALENLKSLNLDQTHYLITIPRQLISRFSCLVVLRMFGVGDWSPNGKRNDSDLFSGGDLL 672

Query: 192 IG-------------------------NGEFEQLC-------GFRRSKSLDVSALADLKR 219
           +                          N E  + C        F+RS+ LDVSALA L+ 
Sbjct: 673 VEALRGLKHLEVLSLTLNNSQDLQCVLNSEKLRSCTQALYLHSFKRSEPLDVSALAGLEH 732

Query: 220 LNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKS 279
           LNRL I EC  L ELKM          Q FVF SL+K QI  C  LK+LTFL+FAPNLKS
Sbjct: 733 LNRLWIHECEELEELKM--------ARQPFVFQSLEKIQIYGCHRLKNLTFLLFAPNLKS 784

Query: 280 IEVDSCYALEEIVSDV-----PEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLK 334
           IEV SC+A+EEI+S+V     PEV M  + PFAQ + L    L  LKSIY++PLPFP L+
Sbjct: 785 IEVSSCFAMEEIISEVKFADFPEV-MPIIKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLR 843

Query: 335 EMKVIHCLKLKKLPLDSNRAKERKIVIRGSRERWEQLQWENQATKNAFIPCF 386
           ++ V  C +L+KLPLDSN AKERKIVIRG  + WEQLQWE+Q T+NAF PCF
Sbjct: 844 DLTVNSCDELRKLPLDSNSAKERKIVIRGYTKWWEQLQWEDQDTQNAFRPCF 895

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 223/413 (53%), Positives = 261/413 (63%), Gaps = 58/413 (14%)

Query: 24  MSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFL 83
           ++ DIE EKE   VYAG GL E PDVR WEK  RRLSLM+NQI NLSE+PTCP+L TL L
Sbjct: 485 IACDIEREKENFFVYAGVGLVEAPDVRGWEK-ARRLSLMQNQIRNLSEIPTCPHLLTLLL 543

Query: 84  NNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE 143
           N N  LR+I + FFQ MP L VLNLS    L   P+GIS+L+SLQHLDLS + I E P E
Sbjct: 544 NENN-LRKIQNYFFQFMPSLKVLNLSHC-ELTKLPVGISELVSLQHLDLSESDIEEFPGE 601

Query: 144 LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDG------MIGNGEF 197
           L ALVNL CL+LE T  L  IPR+LIS+ S L VLR+FG+ ++  D       + G GE 
Sbjct: 602 LKALVNLKCLDLEYTRNLITIPRQLISNLSRLRVLRMFGASHNAFDEASENSILFGGGEL 661

Query: 198 --EQLCG-------------------------------------FRRSKSLDVSALADLK 218
             E+L G                                     F+ S SL+VSALADLK
Sbjct: 662 IVEELLGLKHLEVITLTLRSSYGLQSFLNSHKLRSCTQALLLQHFKDSTSLEVSALADLK 721

Query: 219 RLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLK 278
           +LNRL+IA    L ELKMDY   VQ     F F SL   +I  C +LKDLTFL+FAPNLK
Sbjct: 722 QLNRLQIANSVILEELKMDYAEEVQQ----FAFRSLNMVEICNCIQLKDLTFLVFAPNLK 777

Query: 279 SIEVDSCYALEEIVS-----DVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHL 333
           SI+V  C+A+EEI S     +VPEV M NLNPF +   L  +   NLKSIY K LPFPHL
Sbjct: 778 SIKVGICHAMEEIASEGKFAEVPEV-MANLNPFEKLQNLEVAGARNLKSIYWKSLPFPHL 836

Query: 334 KEMKVIHCLKLKKLPLDSNRAKERKIVIRGSRERWEQLQWENQATKNAFIPCF 386
           K M  +HC KLKKLPLDSN AKERKIVI G R   EQLQWE++AT+NAF+ CF
Sbjct: 837 KAMSFLHCKKLKKLPLDSNSAKERKIVISGERNWREQLQWEDEATRNAFLRCF 889

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 199/412 (48%), Positives = 254/412 (61%), Gaps = 57/412 (13%)

Query: 27  DIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNN 86
           +IEEEK   LV AGAGL + P V++WE NVRRLSLM+N I+ LSEVPTCP L TLFL +N
Sbjct: 479 EIEEEKRNFLVRAGAGLEQAPAVKEWE-NVRRLSLMQNDIKILSEVPTCPDLHTLFLASN 537

Query: 87  APLRRIDSGFFQSMPRLNVLNLS--GAIRLYSFPLGISKLISLQHLDLSNTGIAELPKEL 144
             L+RI  GFF+ MP L VL +S  G +++   PLG+S L SL+ LD+S T I ELP+EL
Sbjct: 538 NNLQRITDGFFKFMPSLKVLKMSHCGDLKVLKLPLGMSMLGSLELLDISQTSIGELPEEL 597

Query: 145 NALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDG-----MIGNGE--F 197
             LVNL CLNL     L+ IPR+LIS+ S LHVLR+F +G S+S+      + G GE   
Sbjct: 598 KLLVNLKCLNLRWATWLSKIPRQLISNSSRLHVLRMFATGCSHSEASEDSVLFGGGEVLI 657

Query: 198 EQLCGF-------------------------------------RRSKS-LDVSALADLKR 219
           ++L G                                      R +KS +D +A ADL  
Sbjct: 658 QELLGLKYLEVLELTLRSSHALQLFFSSNKLKSCIRSLLLDEVRGTKSIIDATAFADLNH 717

Query: 220 LNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKS 279
           LN L+I     + ELK+DY  +V+   + FVF SL +  +  C +LKDLTFL+FAPNLKS
Sbjct: 718 LNELRIDSVAEVEELKIDYTEIVRKRREPFVFGSLHRVTLGQCLKLKDLTFLVFAPNLKS 777

Query: 280 IEVDSCYALEEIVS-----DVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLK 334
           +++ +C A+EEI+S     +VPEV MG+++PF     L    LP LKSIY KPLPF HLK
Sbjct: 778 LQLLNCRAMEEIISVGKFAEVPEV-MGHISPFENLQRLHLFDLPRLKSIYWKPLPFTHLK 836

Query: 335 EMKVIHCLKLKKLPLDSNRAKERKIVIRGSRERWEQLQWENQATKNAFIPCF 386
           EM+V  C +LKKLPLDSN A   K VIRG  E W +LQWE+ AT+ AF  CF
Sbjct: 837 EMRVHGCNQLKKLPLDSNSA---KFVIRGEAEGWNRLQWEDDATQIAFRSCF 885

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443158|ref|XP_002263674.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  254 bits (649), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 172/412 (41%), Positives = 236/412 (57%), Gaps = 60/412 (14%)

Query: 32  KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRR 91
           K++ LV AGAGL+E P++ KW K V R+SLM N IE L++VPTCP L TLFLNNN+ L  
Sbjct: 492 KDKFLVQAGAGLTELPEIGKW-KGVERMSLMSNHIEKLTQVPTCPNLLTLFLNNNS-LEV 549

Query: 92  IDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLT 151
           I  GFFQ MPRL VLNLS + R+   P  I +L+SL++LDLS T I+ LP E   LVNL 
Sbjct: 550 ITDGFFQLMPRLQVLNLSWS-RVSELPTEIFRLVSLRYLDLSWTCISHLPNEFKNLVNLK 608

Query: 152 CLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGY--SYSDGMIGNGE---------FEQL 200
            LNL+ T +L +IPR ++SS S L VL++F  G+     D ++ +G             L
Sbjct: 609 YLNLDYTQQLGIIPRHVVSSMSRLQVLKMFHCGFYGVGEDNVLSDGNEALVNELECLNNL 668

Query: 201 CG-------------------------------FRRSKSLDVSALADLKRLNRLKIAECY 229
           C                                F    SLD+S L ++KRL+ L I++C 
Sbjct: 669 CDLNITIRSASALQRCLCSEKIEGCTQDLFLQFFNGLNSLDISFLENMKRLDTLHISDCA 728

Query: 230 GLAELKMDYKSVVQN--TGQSFV----------FHSLKKFQISYCKELKDLTFLIFAPNL 277
            LA+L ++     Q   T  +++          FHSL+  +I  C  LKDLT+L+FAPNL
Sbjct: 729 TLADLNINGTDEGQEILTSDNYLDNSKITSLKNFHSLRSVRIERCLMLKDLTWLVFAPNL 788

Query: 278 KSIEVDSCYALEEIVSD---VPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLK 334
            ++ +  C  +E+++     V      N++PFA+   L    LP LKSIYR  L FP LK
Sbjct: 789 VNLWIVFCRNIEQVIDSGKWVEAAEGRNMSPFAKLEDLILIDLPKLKSIYRNTLAFPCLK 848

Query: 335 EMKVIHCLKLKKLPLDSNRAKERKIVIRGSRERWEQLQWENQATKNAFIPCF 386
           E++V  C KLKKLPL+SN AK R +VI G ++   +L+WE++A  NAF+PCF
Sbjct: 849 EVRVHCCPKLKKLPLNSNSAKGRGMVIYGEKDWRNELEWEDEAAHNAFLPCF 900

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122896|ref|XP_002318943.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857319|gb|EEE94866.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 158/405 (39%), Positives = 223/405 (55%), Gaps = 54/405 (13%)

Query: 27  DIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNN 86
           D  +E   +LV AG  L++ P+V KWE  VRR+SLM N I+NLS+ P C  L TLFL  N
Sbjct: 420 DSRKENPVYLVEAGTQLADAPEVGKWEV-VRRVSLMANNIQNLSKAPRCNDLVTLFLKKN 478

Query: 87  APLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNA 146
             L+ I   FFQ M  L VL+LS    +  FP GI KL+SLQ+L+LS TGI +LP +L  
Sbjct: 479 N-LKMISDTFFQFMLSLKVLDLSENREITEFPSGILKLVSLQYLNLSRTGIRQLPVQLKN 537

Query: 147 LVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNG----------- 195
           LV L CLNLE T+ L  IP ++IS+FSSL VLR+F    + SD ++G+G           
Sbjct: 538 LVKLKCLNLEHTYELRTIPMQVISNFSSLTVLRMFHC--ASSDSVVGDGVQTGGPGSLAR 595

Query: 196 ----------------------------------EFEQLCGFRRSKSLDVSALADLKRLN 221
                                             +   L  F  ++SLD+S L  +  L+
Sbjct: 596 DLQCLEHLNLLTITIRSQYSLQTFASFNKFLTATQALSLQKFHHARSLDISLLEGMNSLD 655

Query: 222 RLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIE 281
            L++ +C  L +L ++  S+ + T     F+SL++  I  C +L+DL +L  APN+K + 
Sbjct: 656 DLELIDCSNLKDLSINNSSITRETS----FNSLRRVSIVNCTKLEDLAWLTLAPNIKFLT 711

Query: 282 VDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHC 341
           +  C  +EEI+    +    NL  F +  FL    LP LK IY   LPFP LKE+ V  C
Sbjct: 712 ISRCSKMEEIIRQ-EKSGQRNLKVFEELEFLRLVSLPKLKVIYPDALPFPSLKEIFVDDC 770

Query: 342 LKLKKLPLDSNRAKERKIVIRGSRERWEQLQWENQATKNAFIPCF 386
             L+KLPL+SN AKE +IVI+G  + W +L+WE++A ++ F+  F
Sbjct: 771 PNLRKLPLNSNSAKEHRIVIQGWEDWWRRLEWEDEAAQHTFLHSF 815

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442867|ref|XP_002281592.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 159/410 (38%), Positives = 223/410 (54%), Gaps = 51/410 (12%)

Query: 24  MSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFL 83
           ++ +  +E+++ LV A +GL+E P+V +W    +R+SL+ NQIE L+  P CP L TLFL
Sbjct: 483 IACETGKEQDKFLVQASSGLTEAPEVARW-MGPKRISLIGNQIEKLTGSPNCPNLSTLFL 541

Query: 84  NNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE 143
            +N+ L+ I   FFQ MP L VL+LS    +   P GIS L+SLQ+L+LS T I ELP E
Sbjct: 542 QDNS-LKMITDSFFQFMPNLRVLDLSRNA-MTELPQGISNLVSLQYLNLSQTNIKELPIE 599

Query: 144 LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSD-------------- 189
           L  L  L  L L    RL+ IP +LISS S L V+ +F  G    D              
Sbjct: 600 LKNLGKLKFLLLHRM-RLSSIPEQLISSLSMLQVIDMFNCGICDGDEALVEELESLKYLH 658

Query: 190 ----GMIGNGEFEQLCG---------------FRRSKSLDVSALADLKRLNRLKIAECYG 230
                +     F++L                 F  S SL++++L ++KRL  L I+ C  
Sbjct: 659 DLGVTITSASAFKRLLSSDKLKSCISGVCLENFNGSSSLNLTSLCNVKRLRNLFISNCGS 718

Query: 231 LAELKMDYKSVVQNTGQS----------FVFHSLKKFQISYCKELKDLTFLIFAPNLKSI 280
             +L++D+    + T +S            FH+L   ++  C  LKDLT+L+FAPNLK +
Sbjct: 719 SEDLEIDWAWEGKETTESNYLNSKVSSHSSFHNLSWLRVKRCSRLKDLTWLVFAPNLKVL 778

Query: 281 EVDSCYALEEIVSDVP---EVMMG-NLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEM 336
            + SC  ++EI+           G NL+PF +   L    LP LKSI+ K LPF +L  +
Sbjct: 779 LITSCDQMQEIIGTGKCGESTENGENLSPFVKLQVLTLEDLPQLKSIFWKALPFIYLNTI 838

Query: 337 KVIHCLKLKKLPLDSNRAKERKIVIRGSRERWEQLQWENQATKNAFIPCF 386
            V  C  LKKLPLD+N AKE +IVI G  E + +L WEN+AT NAF+PCF
Sbjct: 839 YVDSCPLLKKLPLDANSAKEHRIVISGQTEWFNELDWENEATHNAFLPCF 888

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852651|emb|CAN80649.1| hypothetical protein VITISV_017542 [Vitis vinifera]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 157/390 (40%), Positives = 217/390 (55%), Gaps = 31/390 (7%)

Query: 24  MSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFL 83
           ++ +  +E+++ LV AG+ L+E P+V +W    +R+SLM NQIE L+  P CP L TLFL
Sbjct: 483 IARETGKEQDKFLVKAGSTLTEAPEVAEW-MGPKRISLMNNQIEKLTGSPICPNLSTLFL 541

Query: 84  NNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE 143
             N+ L+ I   FFQ MP L VL+LS    +   P  IS L+SL++LDLS T I ELP E
Sbjct: 542 RENS-LKMITDSFFQFMPNLRVLDLSDN-SITELPREISNLVSLRYLDLSFTEIKELPIE 599

Query: 144 LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQL--- 200
           L  L NL CL L    +L+ +P +LISS   L V+ +F  G    D  +   E E L   
Sbjct: 600 LKNLGNLKCLLLSFMPQLSSVPEQLISSLLMLQVIDMFDCGICDGDEALVE-ELESLKYL 658

Query: 201 ----------CGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDY-----KSVVQNT 245
                       F+R  S D       +RL  L I+ C  L +L++D+     K+V  N 
Sbjct: 659 HDLSVTITSTSAFKRLLSSDKLRSCISRRLRNLFISNCGSLEDLEIDWVGEGKKTVESNY 718

Query: 246 GQSFV-----FHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIV----SDVP 296
             S V     FHSL+   +  C  LKDLT++ FAPNLK + +  C  ++E++    SD  
Sbjct: 719 LNSKVSSHNSFHSLEALTVVSCSRLKDLTWVAFAPNLKVLTIIDCDQMQEVIGTRKSDES 778

Query: 297 EVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAKE 356
                NL PFA+   L    LP LKSI+ K LP  +L  + V +C  LKKLPL++N AK 
Sbjct: 779 AENGENLGPFAKLQVLHLVGLPQLKSIFWKALPLIYLNRIHVRNCPLLKKLPLNANSAKG 838

Query: 357 RKIVIRGSRERWEQLQWENQATKNAFIPCF 386
            +IVI G  E W +++WE++AT NAF+PCF
Sbjct: 839 HRIVISGQTEWWNEVEWEDEATHNAFLPCF 868

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204683|emb|CBI25181.3| unnamed protein product [Vitis vinifera]

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 159/360 (44%), Positives = 215/360 (59%), Gaps = 23/360 (6%)

Query: 32  KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRR 91
           K++ LV AGAGL+E P++ KW K V R+SLM N IE L++VPTCP L TL   NN  L  
Sbjct: 269 KDKFLVQAGAGLTELPEIGKW-KGVERMSLMSNHIEKLTQVPTCPNLLTL-FLNNNSLEV 326

Query: 92  IDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLT 151
           I  GFFQ MPRL VLNLS + R+   P  I +L+SL++LDLS T I+ LP E   LVNL 
Sbjct: 327 ITDGFFQLMPRLQVLNLSWS-RVSELPTEIFRLVSLRYLDLSWTCISHLPNEFKNLVNLK 385

Query: 152 CLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDV 211
            LNL+ T +L +IPR ++SS S L VL++F  G+       G GE   LC       L  
Sbjct: 386 YLNLDYTQQLGIIPRHVVSSMSRLQVLKMFHCGF------YGVGEDNVLC-------LCS 432

Query: 212 SALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFV--FHSLKKFQISYCKELKDLT 269
             +    +   L+     G   L  D  + + N+  + +  FHSL+  +I  C  LKDLT
Sbjct: 433 EKIEGCTQDLFLQFFNDEGQEILTSD--NYLDNSKITSLKNFHSLRSVRIERCLMLKDLT 490

Query: 270 FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMG---NLNPFAQFHFLCFSYLPNLKSIYRK 326
           +L+FAPNL ++ +  C  +E+++     V      N++PFA+   L    LP LKSIYR 
Sbjct: 491 WLVFAPNLVNLWIVFCRNIEQVIDSGKWVEAAEGRNMSPFAKLEDLILIDLPKLKSIYRN 550

Query: 327 PLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIRGSRERWEQLQWENQATKNAFIPCF 386
            L FP LKE++V  C KLKKLPL+SN AK R +VI G ++   +L+WE++A  NAF+PCF
Sbjct: 551 TLAFPCLKEVRVHCCPKLKKLPLNSNSAKGRGMVIYGEKDWRNELEWEDEAAHNAFLPCF 610

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	386
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.782	0.337	0.323	9.1e-32
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.831	0.361	0.307	3.1e-26
TAIR|locus:2031356	884	AT1G63360 [Arabidopsis thalian	0.886	0.386	0.293	8.2e-26
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.829	0.355	0.285	2.7e-24
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.808	0.352	0.321	2.6e-24
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.795	0.341	0.320	2.7e-24
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.816	0.355	0.316	5.4e-24
TAIR|locus:2203881	893	AT1G62630 [Arabidopsis thalian	0.790	0.341	0.303	5.5e-24
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.670	0.339	0.333	5.3e-22
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.813	0.345	0.294	4.1e-21

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 9.1e-32, Sum P(2) = 9.1e-32
 Identities = 106/328 (32%), Positives = 172/328 (52%)

Query:    76 PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDL--- 132
             P L  L L+ N+ LR++ +     +  L  L+LS    +   P+G+ +L  L++L L   
Sbjct:   563 PMLVVLDLSGNSSLRKLPNQI-SKLVSLRYLDLSWTY-IKRLPVGLQELKKLRYLRLDYM 620

Query:   133 ----SNTGIAELP--KELNALVNLTCLNL---EETWRLTVIPRRLISSFSSLHVLRIFGS 183
                 S +GI+ +   ++L  L +   L++   EE   L  +    IS  SSL V ++  +
Sbjct:   621 KRLKSISGISNISSLRKLQLLQSKMSLDMSLVEELQLLEHLEVLNISIKSSLVVEKLLNA 680

Query:   184 GYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYK--SV 241
                    ++   +   L G +   S  V  L D+  LN++ I +C G+ E+K++ K  S+
Sbjct:   681 -----PRLVKCLQILVLRGVQEESS-GVLTLPDMDNLNKVIIRKC-GMCEIKIERKTLSL 733

Query:   242 VQNTGQSFVF-HSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMM 300
               N      F H+L    IS C  LKDLT+L+FAPNL S+EV     +E I++    + M
Sbjct:   734 SSNRSPKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVLDSELVEGIINQEKAMTM 793

Query:   301 GNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRA-KERKI 359
               + PF +   L    L  L+SIY +PL FP LK + +  C +L+KLPLDS  A ++ ++
Sbjct:   794 SGIIPFQKLESLRLHNLAMLRSIYWQPLSFPCLKTIHITKCPELRKLPLDSEIAIRDEEL 853

Query:   360 VIRGSRERW-EQLQWENQATKNAFIPCF 386
             VI+   E W E+++W+N+AT+  F+P F
Sbjct:   854 VIKYQEEEWLERVEWDNEATRLRFLPFF 881

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 3.1e-26, P = 3.1e-26
 Identities = 105/342 (30%), Positives = 167/342 (48%)

Query:    59 LSLMENQIENLS-EVPTC-PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYS 116
             L L +N +  +S E   C P+L  L L+ N  L  +     + +  L   NLS    ++ 
Sbjct:   544 LFLQKNDVVKISAEFFRCMPHLVVLDLSENQSLNELPEEISE-LASLRYFNLSYTC-IHQ 601

Query:   117 FPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLH 176
              P+G+  L  L HL+L +         ++ L NL  L L ++ RL ++   L+     L 
Sbjct:   602 LPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDS-RL-LLDMSLVKELQLLE 659

Query:   177 VLRIFGSGYSYS---DGMIGNGEFEQLC---GFR--RSKSLDVSALADLKRLNRLKIAEC 228
              L +     S S   + ++ +    +      F+  + +S+ V  L  +  L +L I  C
Sbjct:   660 HLEVITLDISSSLVAEPLLCSQRLVECIKEVDFKYLKEESVRVLTLPTMGNLRKLGIKRC 719

Query:   229 YGLAELKMDYKSVVQNTGQSFV---FHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSC 285
              G+ E+K++  +   +  +S     F +L +  I+ C  LKDLT+L+FAPNL  +EV   
Sbjct:   720 -GMREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLTFLEVGFS 778

Query:   286 YALEEIVSDVP-EVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKL 344
               +E+I+S+   E     + PF +   L    L  LK IY K L FP LK + V  C KL
Sbjct:   779 KEVEDIISEEKAEEHSATIVPFRKLETLHLFELRGLKRIYAKALHFPCLKVIHVEKCEKL 838

Query:   345 KKLPLDSNR--AKERKIVIRGSRERWEQLQWENQATKNAFIP 384
             +KLPLDS    A E  ++  G RE  E+++WE+QAT+  F+P
Sbjct:   839 RKLPLDSKSGIAGEELVIYYGEREWIERVEWEDQATQLRFLP 880

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2031356 AT1G63360 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 8.2e-26, P = 8.2e-26
 Identities = 111/378 (29%), Positives = 175/378 (46%)

Query:    23 RMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLS-EVPTC-PYLRT 80
             RMS  + E K  HLV    G  E  ++       R    + +Q++ +S E   C P L  
Sbjct:   519 RMS--LMENKIHHLV----GSYECMELTTLLLGKREYGSIRSQLKTISSEFFNCMPKLAV 572

Query:    81 LFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAEL 140
             L L++N  L  +      ++  L  LNL     +   P GI +L  + HL+L  T   E 
Sbjct:   573 LDLSHNKSLFELPEEI-SNLVSLKYLNLLYT-EISHLPKGIQELKKIIHLNLEYTRKLES 630

Query:   141 PKELNALVNLTCLNLEET---WRLTVIPRRLISSFSSLHVLRIF----GSGYSYSDGMIG 193
                +++L NL  L L  +   W L  +    + +   L +L          +  S  ++ 
Sbjct:   631 ITGISSLHNLKVLKLFRSRLPWDLNTVKE--LETLEHLEILTTTIDPRAKQFLSSHRLLS 688

Query:   194 NGEFEQLCGFRRSK-SLDVSALA-DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVF 251
             +    ++ G   S  +  + +L+    +L   +I  C  ++E+KM         G    F
Sbjct:   689 HSRLLEIYGSSVSSLNRHLESLSVSTDKLREFQIKSC-SISEIKM---------GGICNF 738

Query:   252 HSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVP--EVMMGNLNPFAQF 309
              SL    I  C+ L++LTFLIFAP ++S+ V     LE+I+++    E     + PF + 
Sbjct:   739 LSLVDVNIFNCEGLRELTFLIFAPKIRSLSVWHAKDLEDIINEEKACEGEESGILPFPEL 798

Query:   310 HFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAK--ERKIVIRGSRER 367
             +FL    LP LK IY +PLPF  L+E+ +  C  L+KLPLDS   K  E   +IR    R
Sbjct:   799 NFLTLHDLPKLKKIYWRPLPFLCLEEINIRECPNLRKLPLDSTSGKQGENGCIIRNKDSR 858

Query:   368 W-EQLQWENQATKNAFIP 384
             W E ++W ++ATK  F+P
Sbjct:   859 WFEGVKWADEATKKRFLP 876

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 2.7e-24, P = 2.7e-24
 Identities = 97/340 (28%), Positives = 166/340 (48%)

Query:    59 LSLMENQIENL--SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYS 116
             L L  N+++NL  + +     L  L L+ N    ++       +  L  L+LS    +  
Sbjct:   538 LFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQI-SGLVSLQFLDLSNT-SIEH 595

Query:   117 FPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNL--EETWRLTVIPRRLISSFSS 174
              P+G+ +L  L  LDL+ T        ++ L++L  L L   +      + + L     +
Sbjct:   596 MPIGLKELKKLTFLDLTYTDRLCSISGISRLLSLRLLRLLGSKVHGDASVLKEL-QQLQN 654

Query:   175 LHVLRIFGSGYSYS-DGMIGNGEFEQLC--GFRRSKSLDVSALADLKRLNRLKIAECYGL 231
             L  L I  S    S D  +       LC  GF + K  D+S LA ++ L+ L++   Y  
Sbjct:   655 LQELAITVSAELISLDQRLAK-LISNLCIEGFLQ-KPFDLSFLASMENLSSLRVENSY-F 711

Query:   232 AELKM----DYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYA 287
             +E+K        S ++   +   F +L + +I  C  +KDLT+++FAPNL  + ++    
Sbjct:   712 SEIKCRESETESSYLRINPKIPCFTNLSRLEIMKCHSMKDLTWILFAPNLVVLLIEDSRE 771

Query:   288 LEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKL 347
             + EI++      + ++ PF +  +L    LP L+SIY  PLPFP L  M V +C KL+KL
Sbjct:   772 VGEIINKEKATNLTSITPFLKLEWLILYNLPKLESIYWSPLPFPVLLTMDVSNCPKLRKL 831

Query:   348 PLDS---NRAKERKIVIRGSRERWEQLQWENQATKNAFIP 384
             PL++   ++ +E +I +    E+  +L+WE+  TKN F+P
Sbjct:   832 PLNATSVSKVEEFEIHMYPPPEQENELEWEDDDTKNRFLP 871

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 111/345 (32%), Positives = 170/345 (49%)

Query:    59 LSLMENQ-IENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLY 115
             L L +N+ + N+S     + P L  L L+ N  L  +     + +  L  L+LS +  + 
Sbjct:   545 LFLQDNRHLVNISGEFFRSMPRLVVLDLSWNVNLSGLPDQISE-LVSLRYLDLSYS-SIG 602

Query:   116 SFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTC---LNLEETWRLTVIPRRLISSF 172
               P+G+ KL  L HL+L +    E    ++ L NL     LNL   W LT+     +   
Sbjct:   603 RLPVGLLKLKKLMHLNLESMLCLESVSGIDHLSNLKTVRLLNLR-MW-LTISLLEELERL 660

Query:   173 SSLHVLRIFGSGYSYSDGMIGNGEFEQL-CGFRRSKSLD-VSA-LADLKRLNRLKIAECY 229
              +L VL I          +I +   EQL C  R  + L  VS    D + +  L +    
Sbjct:   661 ENLEVLTI---------EIISSSALEQLLCSHRLVRCLQKVSVKYLDEESVRILTLPSIG 711

Query:   230 GLAELKMD---YKSVV--QNTG-QSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVD 283
              L E+ +     + ++  +NT   S  F +L K  I+ C  LKDLT+L+FAPNL  + V 
Sbjct:   712 DLREVFIGGCGMRDIIIERNTSLTSPCFPNLSKVLITGCNGLKDLTWLLFAPNLTHLNVW 771

Query:   284 SCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIH-CL 342
             +   +EEI+S   +    ++ PF +  +L    LP LKSIY  PLPFP L ++ V + C 
Sbjct:   772 NSRQIEEIISQ-EKASTADIVPFRKLEYLHLWDLPELKSIYWNPLPFPCLNQINVQNKCR 830

Query:   343 KLKKLPLDSNRA--KERKIVIRGSRERW-EQLQWENQATKNAFIP 384
             KL KLPLDS        ++VI+   E W E+++WE++AT+  F+P
Sbjct:   831 KLTKLPLDSQSCIVAGEELVIQYGDEEWKERVEWEDKATRLRFLP 875

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 2.7e-24, P = 2.7e-24
 Identities = 109/340 (32%), Positives = 168/340 (49%)

Query:    24 MSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFL 83
             ++SD+ ++ E  +V A  GL E   V  W   VRR+SLM+N I +L     C  L TL L
Sbjct:   486 IASDLGKQNEAFIVRASVGLREILKVENWNV-VRRMSLMKNNIAHLDGRLDCMELTTLLL 544

Query:    84 NNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE 143
              +   L +I S FF SMP+L VL+LSG   L   P GIS+L+SLQ+L+LS+TGI  LPK 
Sbjct:   545 QSTH-LEKISSEFFNSMPKLAVLDLSGNYYLSELPNGISELVSLQYLNLSSTGIRHLPKG 603

Query:   144 LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGF 203
             L  L  L  L LE T +L  +    IS   +L VL++ GS Y++    +   E E L   
Sbjct:   604 LQELKKLIHLYLERTSQLGSMVG--ISCLHNLKVLKLSGSSYAWDLDTVK--ELEALEHL 659

Query:   204 R-RSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFV-----FHSLKKF 257
                + ++D   L   + L+  ++  C  +  LK+   S  +N   S +        L++F
Sbjct:   660 EVLTTTIDDCTLGTDQFLSSHRLMSC--IRFLKISNNSN-RNRNSSRISLPVTMDRLQEF 716

Query:   258 QISYC--KELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMG-NLNPFAQFHFLCF 314
              I +C   E+K      F+ +L  + + +C  L E+      +M   NL    + H +  
Sbjct:   717 TIEHCHTSEIKMGRICSFS-SLIEVNLSNCRRLRELTF----LMFAPNLK---RLHVVSS 768

Query:   315 SYLP---NLKSIY--RKP--LPFPHLKEMKVIHCLKLKKL 347
             + L    N +  +   K   +PFP L E+ + +  +LK +
Sbjct:   769 NQLEDIINKEKAHDGEKSGIVPFPKLNELHLYNLRELKNI 808

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 5.4e-24, P = 5.4e-24
 Identities = 106/335 (31%), Positives = 157/335 (46%)

Query:    26 SDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNN 85
             SD+ + KE  +V AG GL E P+V  W + V+R+SLM N  E +   P C  L TLFL N
Sbjct:   489 SDLGKHKERCIVQAGIGLDELPEVENW-RAVKRMSLMNNNFEKILGSPECVELITLFLQN 547

Query:    86 NAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELN 145
             N  L  I   FF+ MP L VL+LS    L   P  IS+L+SLQ+LDLS T I  LP  L+
Sbjct:   548 NYKLVDISMEFFRCMPSLAVLDLSENHSLSELPEEISELVSLQYLDLSGTYIERLPHGLH 607

Query:   146 ALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRR 205
              L  L  L LE T RL  I    IS  SSL  LR+  S  +   G++   E  QL     
Sbjct:   608 ELRKLVHLKLERTRRLESISG--ISYLSSLRTLRLRDSKTTLDTGLMK--EL-QLLEHLE 662

Query:   206 SKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFV--FHSLKKFQISYCK 263
               + D+S+    +     ++  C     ++  ++   ++ G   +   H+L    I  C 
Sbjct:   663 LITTDISSGLVGELFCYPRVGRCIQHIYIRDHWERPEESVGVLVLPAIHNLCYISIWNCW 722

Query:   264 --EL--------KDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLC 313
               E+        K+LT   F+ NL ++ ++ C  L+++   +    + NL  +   H   
Sbjct:   723 MWEIMIEKTPWKKNLTNPNFS-NLSNVRIEGCDGLKDLTWLLFAPNLINLRVWGCKHLED 781

Query:   314 FSYLPNLKSIYRKP-LPFPHLKEMKVIHCLKLKKL 347
                     S+  K  LPF  L+ + +    +LK +
Sbjct:   782 IISKEKAASVLEKEILPFQKLECLNLYQLSELKSI 816

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2203881 AT1G62630 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 5.5e-24, P = 5.5e-24
 Identities = 103/339 (30%), Positives = 161/339 (47%)

Query:    64 NQIENLS-EVPTC-PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA-IRLYSFPLG 120
             ++I+ +S E   C P L  L L++N  L  +      ++  L  LNLS   IR  S   G
Sbjct:   556 SEIKTISSEFFNCMPKLAVLDLSHNQSLFELPEEI-SNLVSLKYLNLSHTGIRHLS--KG 612

Query:   121 ISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEET---WRLTVIPRRLISSFSSLHV 177
             I +L  + HL+L +T   E    +++L NL  L L  +   W L  +    + +   L +
Sbjct:   613 IQELKKIIHLNLEHTSKLESIDGISSLHNLKVLKLYGSRLPWDLNTVKE--LETLEHLEI 670

Query:   178 LRIF----GSGYSYSDGMIGNGEFEQLCG---FRRSKSLDVSALADLKRLNRLKIAECYG 230
             L          +  S  ++      Q+ G   F   + L+ S      +L   +I  C  
Sbjct:   671 LTTTIDPRAKQFLSSHRLMSRSRLLQIFGSNIFSPDRQLE-SLSVSTDKLREFEIM-CCS 728

Query:   231 LAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEE 290
             ++E+KM         G    F SL    I  C+ L++LTFLIFAP L+S+ V     LE+
Sbjct:   729 ISEIKM---------GGICNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLED 779

Query:   291 IVSDVP--EVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLP 348
             I+++    E     + PF +  +L    LP LK+IYR+PLPF  L+++ +  C  L+KLP
Sbjct:   780 IINEEKACEGEDSGIVPFPELKYLNLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLP 839

Query:   349 LDSNRAK--ERKIVIRGSRERW-EQLQWENQATKNAFIP 384
             LDS   K  E   +I     RW + ++W ++ATK  F+P
Sbjct:   840 LDSRSGKQGENGCIIHYKDSRWLKGVKWADEATKKRFLP 878

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 5.3e-22, P = 5.3e-22
 Identities = 93/279 (33%), Positives = 143/279 (51%)

Query:    24 MSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFL 83
             ++SD  ++KE  +V A  GL E P+ + W   VRR+SLM+N IE ++    C  L TLFL
Sbjct:   371 IASDFGKQKENFVVRARVGLHERPEAKDWGA-VRRMSLMDNHIEEITCESKCSELTTLFL 429

Query:    84 NNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE 143
              +N  L+ +   F + M +L VL+LS        P  IS L+SLQ LDLSNT I +LP  
Sbjct:   430 QSNQ-LKNLSGEFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIKQLPVG 488

Query:   144 LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGF 203
             L  L  LT LNL  T RL  I    IS   SL +LR+ GS   + D  +   E ++L   
Sbjct:   489 LKKLKKLTFLNLAYTVRLCSISG--ISRLLSLRLLRLLGSKV-HGDASVLK-ELQKLQNL 544

Query:   204 RRSKSLDVSALADL-KRL-NRLKIAECYGLAELKMD--YKSVVQNTGQSFVFHSLKKFQI 259
             +   ++ +SA   L +RL N + I    G  +   D  + + ++N    +V +S   F  
Sbjct:   545 QHL-AITLSAELSLNQRLANLISILGIEGFLQKPFDLSFLASMENLSSLWVKNSY--FSE 601

Query:   260 SYCKELKDLT-FLIFAP------NLKSIEVDSCYALEEI 291
               C+E +  + +L   P      NL  + +  C++++++
Sbjct:   602 IKCRESETASSYLRINPKIPCFTNLSRLGLSKCHSIKDL 640

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 4.1e-21, P = 4.1e-21
 Identities = 100/340 (29%), Positives = 161/340 (47%)

Query:    24 MSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFL 83
             M+S+    KE  LV    G +E P    W + +  +SL++N+I+ L E   CP L TL L
Sbjct:   482 MASEQGTYKELILVEPSMGHTEAPKAENWRQALV-ISLLDNRIQTLPEKLICPKLTTLML 540

Query:    84 NNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE 143
               N+ L++I +GFF  MP L VL+LS    +   PL I  L+ L HL +S T I+ LP+E
Sbjct:   541 QQNSSLKKIPTGFFMHMPVLRVLDLSFT-SITEIPLSIKYLVELYHLSMSGTKISVLPQE 599

Query:   144 LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGF 203
             L  L  L  L+L+ T  L  IPR  I   S L VL ++ S   +     G  E E+L GF
Sbjct:   600 LGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNLYYSYAGWELQSFGEDEAEEL-GF 658

Query:   204 RRSKSLD-VSALA-DLKRLNRLKIAECYGLAELKMDYKSVVQNTG------QSFVFH--S 253
                + L+ ++ L   +  L  LK    +G     + +  V +          S   H  +
Sbjct:   659 ADLEYLENLTTLGITVLSLETLKTLFEFGALHKHIQHLHVEECNELLYFNLPSLTNHGRN 718

Query:   254 LKKFQISYCKELKDLTFLIFAPN--LKSIEVDSCYALEEIV----SDVPEVMMGNLNPFA 307
             L++  I  C +L+ L       N  L S+EV + ++L  +     + V +  + N+    
Sbjct:   719 LRRLSIKSCHDLEYLVTPADFENDWLPSLEVLTLHSLHNLTRVWGNSVSQDCLRNIRCIN 778

Query:   308 QFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKL 347
               H  C + L N+  + +     P L+ +++  C ++++L
Sbjct:   779 ISH--C-NKLKNVSWVQK----LPKLEVIELFDCREIEEL 811

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XIII000034 cc-nbs-lrr resistance protein (820 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	386
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.001

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 78  LRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG-AIRLYSFPLGISKLISLQHLDLSNTG 136
           L++L L+NN  L  I  G F+ +P L VL+LSG  +   S P   S L SL+ LDLS   
Sbjct: 2   LKSLDLSNNR-LTVIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDLSGNN 59

Query: 137 I 137
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 57/194 (29%), Positives = 78/194 (40%), Gaps = 43/194 (22%)

Query: 103 LNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNL-----EE 157
           L  LNLSG  RL SFP  IS  IS   LDL  T I E P  L  L NL  L L     E+
Sbjct: 706 LYRLNLSGCSRLKSFP-DISTNIS--WLDLDETAIEEFPSNLR-LENLDELILCEMKSEK 761

Query: 158 TWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADL 217
            W   V P   + +  S  + R+F S               +L           S++ +L
Sbjct: 762 LWE-RVQPLTPLMTMLSPSLTRLFLS---------DIPSLVEL----------PSSIQNL 801

Query: 218 KRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNL 277
            +L  L+I  C  L  L          TG +    SL+   +S C  L+  TF   + N+
Sbjct: 802 HKLEHLEIENCINLETLP---------TGIN--LESLESLDLSGCSRLR--TFPDISTNI 848

Query: 278 KSIEVDSCYALEEI 291
             + +     +EE+
Sbjct: 849 SDLNLSRT-GIEEV 861

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	386
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.9
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.86
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.83
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.77
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.76
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.69
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.68
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.63
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.57
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.52
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.48
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.48
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.41
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.29
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.25
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.25
KOG4341	483	consensus F-box protein containing LRR [General fu	99.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.08
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.08
KOG4341	483	consensus F-box protein containing LRR [General fu	99.01
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.93
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.9
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.86
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.81
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.79
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.75
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.75
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.56
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.55
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.41
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.38
PLN03150	623	hypothetical protein; Provisional	98.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.33
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.28
PLN03150	623	hypothetical protein; Provisional	98.26
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.24
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.07
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.02
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.97
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.97
PRK15386	426	type III secretion protein GogB; Provisional	97.96
PRK15386	426	type III secretion protein GogB; Provisional	97.94
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.92
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.89
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.81
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.73
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.49
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.47
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.0
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.98
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.98
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.96
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.89
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.74
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.69
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.66
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.26
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.69
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.64
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.74
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.92
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.54
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.55
smart00370	26	LRR Leucine-rich repeats, outliers.	87.55

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.90  E-value=3.4e-23  Score=216.63  Aligned_cols=306  Identities=19%  Similarity=0.215  Sum_probs=181.9

Q ss_pred             ccCCCeeechhHHHhhhcccc-ccccEEEEcCCCCCCC--CcccccccCccEEEecCCcccc-cCCC--CCCCCCcEEec
Q 040192           10 VETWKCTKEAMLPRMSSDIEE-EKEEHLVYAGAGLSET--PDVRKWEKNVRRLSLMENQIEN-LSEV--PTCPYLRTLFL   83 (386)
Q Consensus        10 ~~~~~~~~~d~~~~~~~~~~~-~~~~~l~~~~~~l~~~--p~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~L~~L~l   83 (386)
                      +..|.- -.|.+.|.++.|.. .+...+++.+..+.+.  +.+..++ +|+.|++++|.+.+ +|..  ..+++|++|++
T Consensus        48 ~~~w~~-~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~-~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~L  125 (968)
T PLN00113         48 LSNWNS-SADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLP-YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL  125 (968)
T ss_pred             CCCCCC-CCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCC-CCCEEECCCCccCCcCChHHhccCCCCCEEEC
Confidence            345753 25678888888863 2455667777766544  3477788 89999999998875 6654  47888888888


Q ss_pred             ccCcCCCcCChhhhcCCCcCceecccCCcccc-ccchhhcCCCccCEEEcCCCCCC-cccHhhhccCCCCEEEccCCccc
Q 040192           84 NNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLY-SFPLGISKLISLQHLDLSNTGIA-ELPKELNALVNLTCLNLEETWRL  161 (386)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~  161 (386)
                      ++|...+.+|.   +.+++|++|++++| .+. .+|..++++++|++|++++|.+. .+|..++.+++|++|++++|...
T Consensus       126 s~n~l~~~~p~---~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  201 (968)
T PLN00113        126 SNNNFTGSIPR---GSIPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV  201 (968)
T ss_pred             cCCccccccCc---cccCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc
Confidence            88733334442   45677777777777 444 55666777777777777777765 56666777777777777777555


Q ss_pred             cccchhhhcCCCCCcEEEEeccCCccc--cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhccc
Q 040192          162 TVIPRRLISSFSSLHVLRIFGSGYSYS--DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDY  238 (386)
Q Consensus       162 ~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  238 (386)
                      ..+|.. ++.+.+|+.|++++|.+.+.  ..+..+++|+.|. ..+...+..+..+..+++|+.|++++|+.....+ ..
T Consensus       202 ~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~  279 (968)
T PLN00113        202 GQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-PS  279 (968)
T ss_pred             CcCChH-HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-hh
Confidence            556654 67777777777777766543  2344555555555 3333344445556666666666666665433221 22


Q ss_pred             ccccccCccccccCcccEEEecCCCCCCccc-cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccc
Q 040192          239 KSVVQNTGQSFVFHSLKKFQISYCKELKDLT-FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYL  317 (386)
Q Consensus       239 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  317 (386)
                      +.         .+++|+.|++++|.....++ .+..+++|+.|++.+|. +.....       ..+..+++|++|++++|
T Consensus       280 l~---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~-------~~~~~l~~L~~L~L~~n  342 (968)
T PLN00113        280 IF---------SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN-FTGKIP-------VALTSLPRLQVLQLWSN  342 (968)
T ss_pred             Hh---------hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc-cCCcCC-------hhHhcCCCCCEEECcCC
Confidence            22         45566666666653222222 24455566666665543 222111       13444555555555555


Q ss_pred             cccccccCCCcCCCCccEEeecC
Q 040192          318 PNLKSIYRKPLPFPHLKEMKVIH  340 (386)
Q Consensus       318 ~~l~~~~~~~~~~~~L~~L~i~~  340 (386)
                      .....++...+.+++|+.|++++
T Consensus       343 ~l~~~~p~~l~~~~~L~~L~Ls~  365 (968)
T PLN00113        343 KFSGEIPKNLGKHNNLTVLDLST  365 (968)
T ss_pred             CCcCcCChHHhCCCCCcEEECCC
Confidence            32223333334445555555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.90  E-value=1.4e-23  Score=210.48  Aligned_cols=363  Identities=36%  Similarity=0.543  Sum_probs=270.0

Q ss_pred             CCeeechhHH----HhhhccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcC
Q 040192           13 WKCTKEAMLP----RMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAP   88 (386)
Q Consensus        13 ~~~~~~d~~~----~~~~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~   88 (386)
                      ..|+|||+..    |.+.....+++..+.-.+.++.++|....+. .+|++++.++.+..++....++.|++|.+.++..
T Consensus       479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~-~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~  557 (889)
T KOG4658|consen  479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWN-SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD  557 (889)
T ss_pred             eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchh-heeEEEEeccchhhccCCCCCCccceEEEeecch
Confidence            6799998855    4555444445556666667888888888887 8999999999999888888888999999999842


Q ss_pred             -CCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchh
Q 040192           89 -LRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRR  167 (386)
Q Consensus        89 -~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~  167 (386)
                       +..++..+|..++.|++||+++|.....+|..++.+-+||+|+++++.+..+|..++++.+|.+|++..+.....++. 
T Consensus       558 ~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-  636 (889)
T KOG4658|consen  558 WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-  636 (889)
T ss_pred             hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-
Confidence             677888889999999999999998888999999999999999999999999999999999999999998866556644 


Q ss_pred             hhcCCCCCcEEEEeccCCccc-cCCCcCccccccc------c-------------------eee----cCCccccccccc
Q 040192          168 LISSFSSLHVLRIFGSGYSYS-DGMIGNGEFEQLC------G-------------------FRR----SKSLDVSALADL  217 (386)
Q Consensus       168 ~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~------~-------------------~~~----~~~~~~~~l~~~  217 (386)
                      +...+.+|++|.+........ .....+.+|+.|.      .                   ...    ........+..+
T Consensus       637 i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l  716 (889)
T KOG4658|consen  637 ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSL  716 (889)
T ss_pred             hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccc
Confidence            467799999999988763222 1122222333332      0                   001    011225566778


Q ss_pred             cCCcEEEeeccCCccchhcccccccccCccccc-cCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhccCc
Q 040192          218 KRLNRLKIAECYGLAELKMDYKSVVQNTGQSFV-FHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVP  296 (386)
Q Consensus       218 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~  296 (386)
                      .+|+.|.+.+|...+. ...+.......    . ++++.++.+.+|....++.+....|+|++|.+..|..+++++....
T Consensus       717 ~~L~~L~i~~~~~~e~-~~~~~~~~~~~----~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k  791 (889)
T KOG4658|consen  717 GNLEELSILDCGISEI-VIEWEESLIVL----LCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLK  791 (889)
T ss_pred             cCcceEEEEcCCCchh-hcccccccchh----hhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHH
Confidence            8999999999987652 22332211111    3 6788889999998899999888899999999999999998876322


Q ss_pred             ccc--cCCCCccccccee-eeccccccccccCCCcCCCCccEEeecCcccCcCCCCCccccc-C--cceEEEchHHHHhh
Q 040192          297 EVM--MGNLNPFAQFHFL-CFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAK-E--RKIVIRGSRERWEQ  370 (386)
Q Consensus       297 ~~~--~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~-~--~l~i~~~~~~~~~~  370 (386)
                      ...  ......|++++.+ -+.+.+.+..+......++.|+.+.+..||++.++|....... .  ...+...+.+|.+.
T Consensus       792 ~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~  871 (889)
T KOG4658|consen  792 ALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEG  871 (889)
T ss_pred             HhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceee
Confidence            221  1123455666666 4666666666666666788899999999999999999865554 2  33444444578899


Q ss_pred             hhcccccccccc
Q 040192          371 LQWENQATKNAF  382 (386)
Q Consensus       371 ~~~~~~~~~~~~  382 (386)
                      ++|++.+.+..|
T Consensus       872 v~~~~~~~~~~~  883 (889)
T KOG4658|consen  872 VYWEDELTKLRF  883 (889)
T ss_pred             EEehhhhhhhhc
Confidence            999999887765

>PLN03210 Resistant to P

Probab=99.89  E-value=6.4e-22  Score=208.06  Aligned_cols=297  Identities=22%  Similarity=0.266  Sum_probs=152.8

Q ss_pred             EEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcc
Q 040192           35 HLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR  113 (386)
Q Consensus        35 ~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  113 (386)
                      .+.+.+..+..+|...... +|+.|++.++.+..++.. ..+++|+.|+++++..+..+|.  ++.+++|++|++.+|..
T Consensus       593 ~L~~~~~~l~~lP~~f~~~-~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~  669 (1153)
T PLN03210        593 LLRWDKYPLRCMPSNFRPE-NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSS  669 (1153)
T ss_pred             EEEecCCCCCCCCCcCCcc-CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCC
Confidence            3334444444444433334 555555555555554333 4555566666655544444443  44555666666655544


Q ss_pred             ccccchhhcCCCccCEEEcCCC-CCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCC
Q 040192          114 LYSFPLGISKLISLQHLDLSNT-GIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMI  192 (386)
Q Consensus       114 ~~~~~~~~~~l~~L~~L~l~~~-~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  192 (386)
                      +..+|..++++++|+.|++++| .+..+|..+ .+++|+.|++++|..+..+|..    ..+|+.|+++++.+.......
T Consensus       670 L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP~~~  744 (1153)
T PLN03210        670 LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEFPSNL  744 (1153)
T ss_pred             ccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccccccccc
Confidence            5555555555666666666554 334555433 4555666666655444444431    235556666655544432222


Q ss_pred             cCccccccccee-ec-------CCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCC
Q 040192          193 GNGEFEQLCGFR-RS-------KSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKE  264 (386)
Q Consensus       193 ~l~~L~~L~~~~-~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  264 (386)
                      .+++|..|..+. ..       ..........+++|+.|++++|.....++.. +.         .+++|+.|++++|..
T Consensus       745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~---------~L~~L~~L~Ls~C~~  814 (1153)
T PLN03210        745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQ---------NLHKLEHLEIENCIN  814 (1153)
T ss_pred             cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh-hh---------CCCCCCEEECCCCCC
Confidence            334444333110 00       0000011112346666666666554433222 22         566777777777666


Q ss_pred             CCccccccCCCCCcEEeecCCCccchhhccCc----------ccc--cCCCCcccccceeeeccccccccccCCCcCCCC
Q 040192          265 LKDLTFLIFAPNLKSIEVDSCYALEEIVSDVP----------EVM--MGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPH  332 (386)
Q Consensus       265 l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~----------~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  332 (386)
                      ++.+|....+++|+.|++++|..+..++....          ...  ...+..+++|++|++++|..+..++.....+++
T Consensus       815 L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~  894 (1153)
T PLN03210        815 LETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH  894 (1153)
T ss_pred             cCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence            66655444566666666666665544322000          000  013455667777777777777776666666777


Q ss_pred             ccEEeecCcccCcCCCC
Q 040192          333 LKEMKVIHCLKLKKLPL  349 (386)
Q Consensus       333 L~~L~i~~c~~L~~l~~  349 (386)
                      |+.+++++|++|+.++.
T Consensus       895 L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        895 LETVDFSDCGALTEASW  911 (1153)
T ss_pred             CCeeecCCCcccccccC
Confidence            77777777777776554

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=5.4e-22  Score=207.65  Aligned_cols=240  Identities=21%  Similarity=0.242  Sum_probs=150.4

Q ss_pred             cccEEEEcCCCCC-CCCc--ccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecc
Q 040192           32 KEEHLVYAGAGLS-ETPD--VRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNL  108 (386)
Q Consensus        32 ~~~~l~~~~~~l~-~~p~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  108 (386)
                      ..+.+.+.++.+. .+|.  +..+. +|++|++++|.+.+..+...+++|++|++++|...+.+|.. ++.+++|++|++
T Consensus        94 ~L~~L~Ls~n~~~~~ip~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L  171 (968)
T PLN00113         94 YIQTINLSNNQLSGPIPDDIFTTSS-SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDL  171 (968)
T ss_pred             CCCEEECCCCccCCcCChHHhccCC-CCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEEC
Confidence            3667778777765 4554  23666 88888888888876333466788888888888333345554 678888888888


Q ss_pred             cCCccc-cccchhhcCCCccCEEEcCCCCCC-cccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCc
Q 040192          109 SGAIRL-YSFPLGISKLISLQHLDLSNTGIA-ELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYS  186 (386)
Q Consensus       109 ~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  186 (386)
                      ++| .+ ..+|..++++++|++|++++|.+. .+|..++.+++|+.|++++|.....+|.. ++.+++|++|++++|.+.
T Consensus       172 ~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~  249 (968)
T PLN00113        172 GGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLT  249 (968)
T ss_pred             ccC-cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceec
Confidence            887 44 356777788888888888888776 56777778888888888887665566665 777888888888877765


Q ss_pred             cc--cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCC
Q 040192          187 YS--DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCK  263 (386)
Q Consensus       187 ~~--~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  263 (386)
                      +.  ..+..+++|+.|. ..+...+..+..+..+++|++|++++|...... +.++.         .+++|+.|++++|.
T Consensus       250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~---------~l~~L~~L~l~~n~  319 (968)
T PLN00113        250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI-PELVI---------QLQNLEILHLFSNN  319 (968)
T ss_pred             cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC-ChhHc---------CCCCCcEEECCCCc
Confidence            43  2344555555555 223333444555556666666666666443322 22222         34555555555543


Q ss_pred             CCCcc-ccccCCCCCcEEeecCC
Q 040192          264 ELKDL-TFLIFAPNLKSIEVDSC  285 (386)
Q Consensus       264 ~l~~~-~~l~~l~~L~~L~l~~c  285 (386)
                      ....+ ..+..+++|+.|++++|
T Consensus       320 ~~~~~~~~~~~l~~L~~L~L~~n  342 (968)
T PLN00113        320 FTGKIPVALTSLPRLQVLQLWSN  342 (968)
T ss_pred             cCCcCChhHhcCCCCCEEECcCC
Confidence            22222 22344444444444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=7.9e-24  Score=193.91  Aligned_cols=296  Identities=18%  Similarity=0.219  Sum_probs=179.6

Q ss_pred             ccEEEEcCCCCCCCC--cccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192           33 EEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS  109 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  109 (386)
                      ...++++++.+.++.  .+..++ +|+.+++..|.++.+|.. .-..+|+.|++.+| .+..+..+.++.++.|+.||++
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~-nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLP-NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCC-cceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence            345777777777663  357777 888888888888888888 44556888888888 7777776667788888888888


Q ss_pred             CCccccccc-hhhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192          110 GAIRLYSFP-LGISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       110 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      .| .+..++ ..|-.-.++++|++++|.|+.+. ..+..+.+|..|.|+.| .++.+|..+|++++.|+.|++..|.+..
T Consensus       158 rN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  158 RN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceee
Confidence            88 777765 24444467888888888887654 34566778888888888 6677777777888888888888877665


Q ss_pred             c--cCCCcCccccccc-ceeecCC------------------------ccccccccccCCcEEEeeccCCccchhccccc
Q 040192          188 S--DGMIGNGEFEQLC-GFRRSKS------------------------LDVSALADLKRLNRLKIAECYGLAELKMDYKS  240 (386)
Q Consensus       188 ~--~~~~~l~~L~~L~-~~~~~~~------------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  240 (386)
                      .  ..+.+++.|+.++ ..+.+..                        .....+..++.|+.|++++|.+.+-....|- 
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-  314 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-  314 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh-
Confidence            5  2344555555555 1111111                        1122233344444444444433322122221 


Q ss_pred             ccccCccccccCcccEEEecCCCCCCccc--------------------------cccCCCCCcEEeecCCCccchhhcc
Q 040192          241 VVQNTGQSFVFHSLKKFQISYCKELKDLT--------------------------FLIFAPNLKSIEVDSCYALEEIVSD  294 (386)
Q Consensus       241 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--------------------------~l~~l~~L~~L~l~~c~~~~~~~~~  294 (386)
                               .+++|+.|+|+.| .++.++                          .+..+++|++|+|+++. +.-.+++
T Consensus       315 ---------ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IED  383 (873)
T KOG4194|consen  315 ---------FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIED  383 (873)
T ss_pred             ---------hcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEec
Confidence                     3445555555554 233322                          12234555555555522 3222222


Q ss_pred             CcccccCCCCcccccceeeeccccccccccC-CCcCCCCccEEeecCcccCcCCCCC
Q 040192          295 VPEVMMGNLNPFAQFHFLCFSYLPNLKSIYR-KPLPFPHLKEMKVIHCLKLKKLPLD  350 (386)
Q Consensus       295 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~~  350 (386)
                      . .   ..+.++++|+.|++.|+ .+++++. +...+++|+.|++.+ +-+.++...
T Consensus       384 a-a---~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~n  434 (873)
T KOG4194|consen  384 A-A---VAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGD-NAIASIQPN  434 (873)
T ss_pred             c-h---hhhccchhhhheeecCc-eeeecchhhhccCcccceecCCC-Ccceeeccc
Confidence            1 1   24555677777777666 6666664 345577777777766 455555433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.86  E-value=8e-23  Score=187.37  Aligned_cols=293  Identities=19%  Similarity=0.263  Sum_probs=171.5

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      .+-+.+..+.+..+|.+.....+++.|++.+|.|+.+...  ..++.|++|+++.| .+..++...|..-.++++|++++
T Consensus       104 Lq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~  182 (873)
T KOG4194|consen  104 LQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLAS  182 (873)
T ss_pred             ceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecc
Confidence            4455666667777777666664577777777777765444  66777777777776 66666654455566677777776


Q ss_pred             Ccccccc-chhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCcccccc------------------------
Q 040192          111 AIRLYSF-PLGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVI------------------------  164 (386)
Q Consensus       111 ~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~------------------------  164 (386)
                      | .++.+ ...|..+.+|..|.+++|+++.+|. .+.++++|+.|+|..| .++.+                        
T Consensus       183 N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL  260 (873)
T KOG4194|consen  183 N-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKL  260 (873)
T ss_pred             c-cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence            6 66655 3345556666666666666666664 3334666666666555 22222                        


Q ss_pred             chhhhcCCCCCcEEEEeccCCccc--cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccc
Q 040192          165 PRRLISSFSSLHVLRIFGSGYSYS--DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSV  241 (386)
Q Consensus       165 ~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  241 (386)
                      ..++|-.|.++++|++..|.+...  +..-++..|+.|. +.+.+....+..+..+++|+.|++++|+..+ ++...+..
T Consensus       261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~-l~~~sf~~  339 (873)
T KOG4194|consen  261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR-LDEGSFRV  339 (873)
T ss_pred             cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc-CChhHHHH
Confidence            222334444445555555444433  2233444444444 2233333345555556666666666665432 22222210


Q ss_pred             ---cccC------------ccccccCcccEEEecCCCC---CCcc-ccccCCCCCcEEeecCCCccchhhccCcccccCC
Q 040192          242 ---VQNT------------GQSFVFHSLKKFQISYCKE---LKDL-TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGN  302 (386)
Q Consensus       242 ---~~~~------------~~~~~~~~L~~L~l~~~~~---l~~~-~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~  302 (386)
                         ++..            |.+..+++|+.|+|.+|..   +++- ....+++.|+.|++.+ ++++++...       .
T Consensus       340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~kr-------A  411 (873)
T KOG4194|consen  340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKR-------A  411 (873)
T ss_pred             HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchh-------h
Confidence               0000            0011567888888887732   2222 1245699999999999 669999884       8


Q ss_pred             CCcccccceeeeccccccccccC-CCcCCCCccEEeec
Q 040192          303 LNPFAQFHFLCFSYLPNLKSIYR-KPLPFPHLKEMKVI  339 (386)
Q Consensus       303 ~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~  339 (386)
                      +.++++||.|+|.++ -+.++-. +...+ .|++|.+.
T Consensus       412 fsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  412 FSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             hccCcccceecCCCC-cceeecccccccc-hhhhhhhc
Confidence            999999999999998 4555532 33444 66666553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.83  E-value=1.9e-22  Score=186.46  Aligned_cols=193  Identities=22%  Similarity=0.338  Sum_probs=138.4

Q ss_pred             cccEEEEcCCCCCCCCc-ccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCC--cCChhhhcCCCcCceec
Q 040192           32 KEEHLVYAGAGLSETPD-VRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLR--RIDSGFFQSMPRLNVLN  107 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~  107 (386)
                      +..++.+.+.++..+|. ++.+. +|++|++..|++..+-.. ..++.||.+.+..| .++  .+|+.+ -++..|.+|+
T Consensus        33 ~~~WLkLnrt~L~~vPeEL~~lq-kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~di-F~l~dLt~lD  109 (1255)
T KOG0444|consen   33 QMTWLKLNRTKLEQVPEELSRLQ-KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN-NLKNSGIPTDI-FRLKDLTILD  109 (1255)
T ss_pred             heeEEEechhhhhhChHHHHHHh-hhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc-ccccCCCCchh-cccccceeee
Confidence            36788899999999986 77777 999999999988875544 88888888888887 554  567774 4788888999


Q ss_pred             ccCCccccccchhhcCCCccCEEEcCCCCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCc
Q 040192          108 LSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYS  186 (386)
Q Consensus       108 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  186 (386)
                      +++| .+.++|..+...+++-+|++++|.|..+|.. +.++..|-.|+++.| .+..+|+. +.++..|+.|.+++|++.
T Consensus       110 LShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  110 LSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             cchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhh
Confidence            9888 8888888888888888888888888888844 457788888888888 67788876 788888888888888766


Q ss_pred             cc--cCCCcCccccccc--ceeecCCccccccccccCCcEEEeeccCC
Q 040192          187 YS--DGMIGNGEFEQLC--GFRRSKSLDVSALADLKRLNRLKIAECYG  230 (386)
Q Consensus       187 ~~--~~~~~l~~L~~L~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  230 (386)
                      -.  .....|..|+.|.  +..+-....+.++..+.+|+.++++.|..
T Consensus       187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L  234 (1255)
T KOG0444|consen  187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL  234 (1255)
T ss_pred             HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence            54  1222333333333  11111223345555555566666555533

>PLN03210 Resistant to P

Probab=99.83  E-value=1.9e-19  Score=189.53  Aligned_cols=293  Identities=20%  Similarity=0.300  Sum_probs=188.7

Q ss_pred             cccEEEEcCCCCCCCCc-ccccccCccEEEecCC-cccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192           32 KEEHLVYAGAGLSETPD-VRKWEKNVRRLSLMEN-QIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS  109 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~-~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  109 (386)
                      ....+.+.+..+..++. +..++ +|+.|+++++ .+..+|....+++|++|++.+|..+..+|.. ++.+++|+.|+++
T Consensus       612 ~L~~L~L~~s~l~~L~~~~~~l~-~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLEKLWDGVHSLT-GLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCccccccccccccCC-CCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCC
Confidence            45667777777777654 55677 9999999987 4666887788999999999998777788877 7899999999999


Q ss_pred             CCccccccchhhcCCCccCEEEcCCCCC-CcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192          110 GAIRLYSFPLGISKLISLQHLDLSNTGI-AELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      +|..+..+|..+ ++++|+.|++++|.. ..+|..   ..+|+.|+++++ .+..+|..  ..+++|+.|++..+.....
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n-~i~~lP~~--~~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDET-AIEEFPSN--LRLENLDELILCEMKSEKL  762 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCC-cccccccc--ccccccccccccccchhhc
Confidence            987788888655 788999999998853 355532   467888888888 45667653  2456666665554221110


Q ss_pred             ---------cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccc--------------ccc
Q 040192          189 ---------DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSV--------------VQN  244 (386)
Q Consensus       189 ---------~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--------------~~~  244 (386)
                               ......+.|+.|. ..+...+..+..+..+++|+.|++++|..+..++... .-              ...
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~  841 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF  841 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence                     0001122333333 1111112234445556666666666655444332211 00              000


Q ss_pred             CccccccCcccEEEecCCCCCCccc-cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccc
Q 040192          245 TGQSFVFHSLKKFQISYCKELKDLT-FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSI  323 (386)
Q Consensus       245 ~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  323 (386)
                      ++   ...+|+.|++++| .++.+| ++..+++|+.|+|.+|+.++.++.        ....+++|+.+++++|.++.++
T Consensus       842 p~---~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--------~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        842 PD---ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--------NISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             cc---cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCc--------ccccccCCCeeecCCCcccccc
Confidence            00   2234555555554 344443 356789999999999999998765        5677899999999999988865


Q ss_pred             cCCC-------------cCCCCccEEeecCcccCcC
Q 040192          324 YRKP-------------LPFPHLKEMKVIHCLKLKK  346 (386)
Q Consensus       324 ~~~~-------------~~~~~L~~L~i~~c~~L~~  346 (386)
                      +...             ..+|....+.+.+|.+|..
T Consensus       910 ~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~  945 (1153)
T PLN03210        910 SWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ  945 (1153)
T ss_pred             cCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence            4321             1245556667788887765

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.77  E-value=2.4e-20  Score=172.73  Aligned_cols=300  Identities=20%  Similarity=0.188  Sum_probs=201.5

Q ss_pred             ccEEEEcCCCCCCC-CcccccccCccEEEecCCcccc--cCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecc
Q 040192           33 EEHLVYAGAGLSET-PDVRKWEKNVRRLSLMENQIEN--LSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNL  108 (386)
Q Consensus        33 ~~~l~~~~~~l~~~-p~~~~~~~~L~~L~l~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  108 (386)
                      ..++....+++..+ ..++.++ .||.+.+..|++..  +|.. .++..|+.|++++| .+...|.. +.+.+++-+|++
T Consensus        57 LEHLs~~HN~L~~vhGELs~Lp-~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~-LE~AKn~iVLNL  133 (1255)
T KOG0444|consen   57 LEHLSMAHNQLISVHGELSDLP-RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTN-LEYAKNSIVLNL  133 (1255)
T ss_pred             hhhhhhhhhhhHhhhhhhccch-hhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchh-hhhhcCcEEEEc
Confidence            56677776677655 4577788 89999998887765  7766 88999999999998 88888887 678899999999


Q ss_pred             cCCccccccch-hhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192          109 SGAIRLYSFPL-GISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       109 ~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      ++| .+..+|. .+.+++.|-+||+++|++..+|+.+..+..|++|.+++|+.. .+...-+..+.+|..|++++++-+-
T Consensus       134 S~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl  211 (1255)
T KOG0444|consen  134 SYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTL  211 (1255)
T ss_pred             ccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchh
Confidence            998 8888874 457889999999999999999999999999999999998542 2221125567788888888876554


Q ss_pred             c---cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCC
Q 040192          188 S---DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCK  263 (386)
Q Consensus       188 ~---~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  263 (386)
                      .   ..+..+.+|..+. +++.+. ..++-+-.+++|+.|++++|+..+-.....           .-.+|+.|+++.| 
T Consensus       212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~-----------~W~~lEtLNlSrN-  278 (1255)
T KOG0444|consen  212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEG-----------EWENLETLNLSRN-  278 (1255)
T ss_pred             hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHH-----------HHhhhhhhccccc-
Confidence            4   2233444444443 222221 235556677889999999987655211111           3357788888887 


Q ss_pred             CCCccc-cccCCCCCcEEeecCCCccc-hhhccC-----------------cccccCCCCcccccceeeecccccccccc
Q 040192          264 ELKDLT-FLIFAPNLKSIEVDSCYALE-EIVSDV-----------------PEVMMGNLNPFAQFHFLCFSYLPNLKSIY  324 (386)
Q Consensus       264 ~l~~~~-~l~~l~~L~~L~l~~c~~~~-~~~~~~-----------------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  324 (386)
                      .++.+| .++.++.|+.|++.++. ++ +-++.+                 ..+ ...+..|++|+.|.|..+ .+-.+|
T Consensus       279 QLt~LP~avcKL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~aanN~LElV-PEglcRC~kL~kL~L~~N-rLiTLP  355 (1255)
T KOG0444|consen  279 QLTVLPDAVCKLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFHAANNKLELV-PEGLCRCVKLQKLKLDHN-RLITLP  355 (1255)
T ss_pred             hhccchHHHhhhHHHHHHHhccCc-ccccCCccchhhhhhhHHHHhhccccccC-chhhhhhHHHHHhccccc-ceeech
Confidence            455554 35666777766666533 22 111100                 000 124555667777777666 555666


Q ss_pred             CCCcCCCCccEEeecCcccCcCCCCCccc
Q 040192          325 RKPLPFPHLKEMKVIHCLKLKKLPLDSNR  353 (386)
Q Consensus       325 ~~~~~~~~L~~L~i~~c~~L~~l~~~~~~  353 (386)
                      .++--++.|+.|++...|+|..=|.....
T Consensus       356 eaIHlL~~l~vLDlreNpnLVMPPKP~da  384 (1255)
T KOG0444|consen  356 EAIHLLPDLKVLDLRENPNLVMPPKPNDA  384 (1255)
T ss_pred             hhhhhcCCcceeeccCCcCccCCCCcchh
Confidence            66666777777777777777665554433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.76  E-value=1.2e-20  Score=166.08  Aligned_cols=285  Identities=22%  Similarity=0.267  Sum_probs=190.2

Q ss_pred             ccEEEEcCCCCCCCC-cccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192           33 EEHLVYAGAGLSETP-DVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA  111 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  111 (386)
                      ..++++..+.+..+| .++.+. ++..|+++.|++..+|++.+|..|..|++..| .++-+|.+..++++++.+||+..|
T Consensus       185 L~~ld~~~N~L~tlP~~lg~l~-~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN  262 (565)
T KOG0472|consen  185 LKHLDCNSNLLETLPPELGGLE-SLELLYLRRNKIRFLPEFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN  262 (565)
T ss_pred             HHhcccchhhhhcCChhhcchh-hhHHHHhhhcccccCCCCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc
Confidence            556777777777775 477777 88888888888888888888888888888888 788888887778888888888888


Q ss_pred             ccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhh-----------------------
Q 040192          112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRL-----------------------  168 (386)
Q Consensus       112 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----------------------  168 (386)
                       +++.+|..++.+.+|.+||+++|.++++|..++++ .|+.|.+.+|+. +.+..++                       
T Consensus       263 -klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLrs~~~~dglS~  339 (565)
T KOG0472|consen  263 -KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL-RTIRREIISKGTQEVLKYLRSKIKDDGLSQ  339 (565)
T ss_pred             -ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch-HHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence             88888888888888888999888888888888888 788888877743 2221110                       


Q ss_pred             ------------------hcCCCCCcEEEEeccCCcccc------------------------CCCcCccccccc----c
Q 040192          169 ------------------ISSFSSLHVLRIFGSGYSYSD------------------------GMIGNGEFEQLC----G  202 (386)
Q Consensus       169 ------------------l~~l~~L~~L~l~~~~~~~~~------------------------~~~~l~~L~~L~----~  202 (386)
                                        ...+.+.+.|++++-+++...                        -...+..+..+.    .
T Consensus       340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~l  419 (565)
T KOG0472|consen  340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVL  419 (565)
T ss_pred             CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHh
Confidence                              111223344444433222220                        011111111111    2


Q ss_pred             eeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEee
Q 040192          203 FRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEV  282 (386)
Q Consensus       203 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l  282 (386)
                      ..+..++.+..+..+++|..|++++| .+.+++.+.+          .+..|+.|+++.| ....+|.....+...+..+
T Consensus       420 snn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~----------~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtll  487 (565)
T KOG0472|consen  420 SNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMG----------SLVRLQTLNLSFN-RFRMLPECLYELQTLETLL  487 (565)
T ss_pred             hcCccccchHHHHhhhcceeeecccc-hhhhcchhhh----------hhhhhheeccccc-ccccchHHHhhHHHHHHHH
Confidence            33334555666667777777777766 4445655554          4556777777777 3444443322222222333


Q ss_pred             cCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcc
Q 040192          283 DSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCL  342 (386)
Q Consensus       283 ~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~  342 (386)
                      ....++..+++       ..+..+.+|.+|++.++ .+..+|...+++.+|+.|++++.|
T Consensus       488 as~nqi~~vd~-------~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  488 ASNNQIGSVDP-------SGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             hccccccccCh-------HHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence            33355666655       24778899999999888 888999999999999999998843

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.69  E-value=8.2e-20  Score=160.88  Aligned_cols=261  Identities=21%  Similarity=0.292  Sum_probs=189.8

Q ss_pred             CccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcC
Q 040192           55 NVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLS  133 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  133 (386)
                      .++.+.++.|++..+... ..+..|.+|.++.| .....|++ ++.+..+..++.+++ ++..+|+.++.+.+++.++++
T Consensus        46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n-~l~~lp~a-ig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDN-KLSQLPAA-IGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             chhhhhhccCchhhccHhhhcccceeEEEeccc-hhhhCCHH-HHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcc
Confidence            577888888888875544 88888899998888 77788877 678888888888888 888888888888899999999


Q ss_pred             CCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccc
Q 040192          134 NTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSA  213 (386)
Q Consensus       134 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~  213 (386)
                      +|.+.++|+.++.+..++.++...| .+..+|.. +..+.+|..+++.+|.+...                      +..
T Consensus       123 ~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~-~~~~~~l~~l~~~~n~l~~l----------------------~~~  178 (565)
T KOG0472|consen  123 SNELKELPDSIGRLLDLEDLDATNN-QISSLPED-MVNLSKLSKLDLEGNKLKAL----------------------PEN  178 (565)
T ss_pred             ccceeecCchHHHHhhhhhhhcccc-ccccCchH-HHHHHHHHHhhccccchhhC----------------------CHH
Confidence            9988888888888888988888888 66777776 78888888888888877665                      122


Q ss_pred             cccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhc
Q 040192          214 LADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVS  293 (386)
Q Consensus       214 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~  293 (386)
                      .-.++.|++|+...|- ++.++.+..          .+.+|+.|++..| .+..+|.+.++..|++|++.. +.++.++.
T Consensus       179 ~i~m~~L~~ld~~~N~-L~tlP~~lg----------~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~-N~i~~lpa  245 (565)
T KOG0472|consen  179 HIAMKRLKHLDCNSNL-LETLPPELG----------GLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGE-NQIEMLPA  245 (565)
T ss_pred             HHHHHHHHhcccchhh-hhcCChhhc----------chhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcc-cHHHhhHH
Confidence            2235666666655542 222333332          5667777777777 466666777777777777776 44666666


Q ss_pred             cCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCCccccc-CcceEEEch
Q 040192          294 DVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAK-ERKIVIRGS  364 (386)
Q Consensus       294 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~-~~l~i~~~~  364 (386)
                      +       ....+++|.+||++++ ++++.|.+...+.+|+.|++++ +.+..+|.....++ +.+.+...|
T Consensus       246 e-------~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnlhL~~L~leGNP  308 (565)
T KOG0472|consen  246 E-------HLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNLHLKFLALEGNP  308 (565)
T ss_pred             H-------Hhcccccceeeecccc-ccccCchHHHHhhhhhhhcccC-CccccCCcccccceeeehhhcCCc
Confidence            3       5556777777777777 6777777777777777777777 57777777666664 444444444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.68  E-value=8.8e-18  Score=147.86  Aligned_cols=275  Identities=17%  Similarity=0.212  Sum_probs=206.3

Q ss_pred             HHHhhhccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhc
Q 040192           21 LPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQ   98 (386)
Q Consensus        21 ~~~~~~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~   98 (386)
                      +-..+|.|+..+...++|.+.++.++|.  .+|+..+.+.+..|+|+.+|+.  ..+++||.|++++| .++.+.+.+|.
T Consensus        36 ~CP~pC~Cs~~~g~~VdCr~~GL~eVP~--~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~  112 (498)
T KOG4237|consen   36 ACPAPCTCSDVEGGIVDCRGKGLTEVPA--NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFK  112 (498)
T ss_pred             cCCCCcccCCCCCceEEccCCCcccCcc--cCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhh
Confidence            3356777776667889999999999986  6676889999999999999887  89999999999999 99999988899


Q ss_pred             CCCcCceecccCCccccccch-hhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCc
Q 040192           99 SMPRLNVLNLSGAIRLYSFPL-GISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLH  176 (386)
Q Consensus        99 ~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  176 (386)
                      +++.+..|-+.++.+++.+|. .|+++..++.|.+.-|.+..++ ..+..++++..|.+.+| .+..++...+..+.+++
T Consensus       113 GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~  191 (498)
T KOG4237|consen  113 GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIK  191 (498)
T ss_pred             hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccc
Confidence            999999998888449999974 6799999999999999888655 57789999999999999 77888876688889999


Q ss_pred             EEEEeccCCccccC--------------CCcCccccccc----------------------ceeecCC-----ccccccc
Q 040192          177 VLRIFGSGYSYSDG--------------MIGNGEFEQLC----------------------GFRRSKS-----LDVSALA  215 (386)
Q Consensus       177 ~L~l~~~~~~~~~~--------------~~~l~~L~~L~----------------------~~~~~~~-----~~~~~l~  215 (386)
                      .+++..+.+.....              .+...-.....                      .....++     ....-+.
T Consensus       192 tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~  271 (498)
T KOG4237|consen  192 TLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFK  271 (498)
T ss_pred             hHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHh
Confidence            98887766332200              00000000000                      0011111     1123356


Q ss_pred             cccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc--cccCCCCCcEEeecCCCccchhhc
Q 040192          216 DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT--FLIFAPNLKSIEVDSCYALEEIVS  293 (386)
Q Consensus       216 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~c~~~~~~~~  293 (386)
                      .+++|+.|++++|+... +...+|.         ....++.|.+..| .+..+.  .+.++..|+.|+|.+ ++|+.+.+
T Consensus       272 ~L~~L~~lnlsnN~i~~-i~~~aFe---------~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~  339 (498)
T KOG4237|consen  272 KLPNLRKLNLSNNKITR-IEDGAFE---------GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVAP  339 (498)
T ss_pred             hcccceEeccCCCccch-hhhhhhc---------chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEec
Confidence            78889999999887655 5556665         6788888888888 566653  356788888899988 55777766


Q ss_pred             cCcccccCCCCcccccceeeecccc
Q 040192          294 DVPEVMMGNLNPFAQFHFLCFSYLP  318 (386)
Q Consensus       294 ~~~~~~~~~~~~~~~L~~L~l~~~~  318 (386)
                             ..+....+|.+|++-.+|
T Consensus       340 -------~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  340 -------GAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             -------ccccccceeeeeehccCc
Confidence                   377777888888877543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.65  E-value=3e-15  Score=148.00  Aligned_cols=267  Identities=19%  Similarity=0.161  Sum_probs=180.1

Q ss_pred             chhHHHhhhccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhh
Q 040192           18 EAMLPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFF   97 (386)
Q Consensus        18 ~d~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~   97 (386)
                      +..+....+.|.......+++.+.++..+|..  ++.+++.|.+.+|.++.+|..  .++|++|++++| .+..+|..  
T Consensus       188 r~~a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~--l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~l--  260 (788)
T PRK15387        188 RAAVVQKMRACLNNGNAVLNVGESGLTTLPDC--LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGN-QLTSLPVL--  260 (788)
T ss_pred             HHHHHHHHHHHhcCCCcEEEcCCCCCCcCCcc--hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCC-ccCcccCc--
Confidence            34556666677776788999999999999872  223899999999999988764  689999999999 78777642  


Q ss_pred             cCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcE
Q 040192           98 QSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHV  177 (386)
Q Consensus        98 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  177 (386)
                        .++|+.|++.+| .+..+|..   ..+|+.|++++|.++.+|..   .++|+.|++++| .+..+|..    ..+|+.
T Consensus       261 --p~sL~~L~Ls~N-~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~  326 (788)
T PRK15387        261 --PPGLLELSIFSN-PLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCK  326 (788)
T ss_pred             --ccccceeeccCC-chhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccc
Confidence              467889999888 77777653   25678888999988888753   467899999888 45556541    235667


Q ss_pred             EEEeccCCccccCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccE
Q 040192          178 LRIFGSGYSYSDGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKK  256 (386)
Q Consensus       178 L~l~~~~~~~~~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  256 (386)
                      |++++|.+....  .....|+.|. +.+.+.+. +.   ..++|+.|++++|+... ++  .           ...+|+.
T Consensus       327 L~Ls~N~L~~LP--~lp~~Lq~LdLS~N~Ls~L-P~---lp~~L~~L~Ls~N~L~~-LP--~-----------l~~~L~~  386 (788)
T PRK15387        327 LWAYNNQLTSLP--TLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LP--A-----------LPSGLKE  386 (788)
T ss_pred             cccccCcccccc--ccccccceEecCCCccCCC-CC---CCcccceehhhcccccc-Cc--c-----------cccccce
Confidence            777777766542  1223455444 22222211 11   13466777777664332 21  1           3357888


Q ss_pred             EEecCCCCCCccccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEE
Q 040192          257 FQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEM  336 (386)
Q Consensus       257 L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  336 (386)
                      |++++| .++.++..  .++|+.|+++++. +..++.           .+.+|+.|+++++ .+..+|.....+++|+.|
T Consensus       387 LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~-----------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~L  450 (788)
T PRK15387        387 LIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM-----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTV  450 (788)
T ss_pred             EEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc-----------chhhhhhhhhccC-cccccChHHhhccCCCeE
Confidence            888887 45655532  3678888888854 655432           1346778888887 677777767778888888


Q ss_pred             eecCc
Q 040192          337 KVIHC  341 (386)
Q Consensus       337 ~i~~c  341 (386)
                      +++++
T Consensus       451 dLs~N  455 (788)
T PRK15387        451 NLEGN  455 (788)
T ss_pred             ECCCC
Confidence            88774

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.63  E-value=2.5e-15  Score=149.31  Aligned_cols=257  Identities=20%  Similarity=0.238  Sum_probs=169.7

Q ss_pred             chhHHHhhhccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhh
Q 040192           18 EAMLPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFF   97 (386)
Q Consensus        18 ~d~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~   97 (386)
                      ++.+.+....|.......+.+.+.++..+|..  ++.+++.|++++|.++.+|... +++|+.|++++| .+..+|..+ 
T Consensus       165 r~~a~~r~~~Cl~~~~~~L~L~~~~LtsLP~~--Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N-~LtsLP~~l-  239 (754)
T PRK15370        165 REEAVQRMRDCLKNNKTELRLKILGLTTIPAC--IPEQITTLILDNNELKSLPENL-QGNIKTLYANSN-QLTSIPATL-  239 (754)
T ss_pred             HHHHHHHHHhhcccCceEEEeCCCCcCcCCcc--cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCC-ccccCChhh-
Confidence            55666666667766677788888888888752  2337899999999988877642 358999999988 777777653 


Q ss_pred             cCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcE
Q 040192           98 QSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHV  177 (386)
Q Consensus        98 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  177 (386)
                        ...|+.|++++| .+..+|..+.  .+|+.|++++|.++.+|..+.  .+|+.|++++| .+..+|.. +.  ++|+.
T Consensus       240 --~~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~  308 (754)
T PRK15370        240 --PDTIQEMELSIN-RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITH  308 (754)
T ss_pred             --hccccEEECcCC-ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHH
Confidence              246889999988 7888776553  478999999998888876553  58999999988 55666653 22  46888


Q ss_pred             EEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEE
Q 040192          178 LRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKF  257 (386)
Q Consensus       178 L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  257 (386)
                      |++++|.+....                      ..+  .++|+.|++++|.... ++ ..           .+++|+.|
T Consensus       309 L~Ls~N~Lt~LP----------------------~~l--~~sL~~L~Ls~N~Lt~-LP-~~-----------l~~sL~~L  351 (754)
T PRK15370        309 LNVQSNSLTALP----------------------ETL--PPGLKTLEAGENALTS-LP-AS-----------LPPELQVL  351 (754)
T ss_pred             HHhcCCccccCC----------------------ccc--cccceeccccCCcccc-CC-hh-----------hcCcccEE
Confidence            888887766541                      111  2467777777764332 21 11           34677777


Q ss_pred             EecCCCCCCccccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCC----CcCCCCc
Q 040192          258 QISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRK----PLPFPHL  333 (386)
Q Consensus       258 ~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~~L  333 (386)
                      ++++| .++.++.. ..++|+.|+|++|. +..++..          ..++|+.|+++++ .+..+|..    ...++.+
T Consensus       352 ~Ls~N-~L~~LP~~-lp~~L~~LdLs~N~-Lt~LP~~----------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l  417 (754)
T PRK15370        352 DVSKN-QITVLPET-LPPTITTLDVSRNA-LTNLPEN----------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQP  417 (754)
T ss_pred             ECCCC-CCCcCChh-hcCCcCEEECCCCc-CCCCCHh----------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCc
Confidence            77777 35544421 13577777777754 5555431          1235777777776 55555432    2234666


Q ss_pred             cEEeecCc
Q 040192          334 KEMKVIHC  341 (386)
Q Consensus       334 ~~L~i~~c  341 (386)
                      ..+++.+.
T Consensus       418 ~~L~L~~N  425 (754)
T PRK15370        418 TRIIVEYN  425 (754)
T ss_pred             cEEEeeCC
Confidence            77777653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.57  E-value=2e-16  Score=152.93  Aligned_cols=242  Identities=20%  Similarity=0.267  Sum_probs=160.2

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN  134 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  134 (386)
                      +++.|..+.|.+........-.+|++++++.+ .+..+| +.++.+.+|+.++..+| .+..+|..+...++|+.|++..
T Consensus       220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~  296 (1081)
T KOG0618|consen  220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAY  296 (1081)
T ss_pred             chheeeeccCcceeeccccccccceeeecchh-hhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhh
Confidence            67777777777765444456668888888888 777777 44778888888888888 7777787777888888888888


Q ss_pred             CCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCC-CcEEEEeccCCccc--cCCCcCccccccc-ceeecCCcc
Q 040192          135 TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSS-LHVLRIFGSGYSYS--DGMIGNGEFEQLC-GFRRSKSLD  210 (386)
Q Consensus       135 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~--~~~~~l~~L~~L~-~~~~~~~~~  210 (386)
                      |.+..+|+.....+.|++|++..| .+..+|...+..... |+.|+.+.+.+...  .+...+.-|+.|. ..++..+..
T Consensus       297 nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c  375 (1081)
T KOG0618|consen  297 NELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC  375 (1081)
T ss_pred             hhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence            888888877777888888888888 667777654554443 66666666655544  2333445555555 344455555


Q ss_pred             ccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc---------------------
Q 040192          211 VSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT---------------------  269 (386)
Q Consensus       211 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---------------------  269 (386)
                      ...+..+.+|+.|++++|+... ++...+.         .++.|+.|+++|| +++.++                     
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~-fpas~~~---------kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~  444 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNS-FPASKLR---------KLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLS  444 (1081)
T ss_pred             hhhhccccceeeeeeccccccc-CCHHHHh---------chHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceee
Confidence            6777778888888888885443 3333333         5677777777776 344433                     


Q ss_pred             --cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccc
Q 040192          270 --FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPN  319 (386)
Q Consensus       270 --~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  319 (386)
                        .+..++.|+.+|++. ++++.....+      . ..-|+|++||++|++.
T Consensus       445 fPe~~~l~qL~~lDlS~-N~L~~~~l~~------~-~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  445 FPELAQLPQLKVLDLSC-NNLSEVTLPE------A-LPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             chhhhhcCcceEEeccc-chhhhhhhhh------h-CCCcccceeeccCCcc
Confidence              344566677777764 4455554421      1 1116777777777754

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=1.1e-16  Score=125.63  Aligned_cols=161  Identities=24%  Similarity=0.417  Sum_probs=139.9

Q ss_pred             CCCCCcccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhh
Q 040192           43 LSETPDVRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGI  121 (386)
Q Consensus        43 l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  121 (386)
                      ..++|.+..+. +++.|.++.|+++.+|+. ..+.+|+.|.+++| .+.++|.+ ++.++.|+.|++.-+ ++..+|.+|
T Consensus        23 f~~~~gLf~~s-~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~-issl~klr~lnvgmn-rl~~lprgf   98 (264)
T KOG0617|consen   23 FEELPGLFNMS-NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTS-ISSLPKLRILNVGMN-RLNILPRGF   98 (264)
T ss_pred             Hhhcccccchh-hhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChh-hhhchhhhheecchh-hhhcCcccc
Confidence            34567777888 999999999999997766 89999999999999 88999988 789999999999988 888899999


Q ss_pred             cCCCccCEEEcCCCCCC--cccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCccccc
Q 040192          122 SKLISLQHLDLSNTGIA--ELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQ  199 (386)
Q Consensus       122 ~~l~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~  199 (386)
                      +.++.|.+||+.+|.+.  .+|..+..+..|+.|++++| ...-+|.. ++.+++|+.|.+++|.+...           
T Consensus        99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~l-----------  165 (264)
T KOG0617|consen   99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLSL-----------  165 (264)
T ss_pred             CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhhC-----------
Confidence            99999999999999886  78888888999999999999 77888887 99999999999999876665           


Q ss_pred             ccceeecCCccccccccccCCcEEEeeccCCc
Q 040192          200 LCGFRRSKSLDVSALADLKRLNRLKIAECYGL  231 (386)
Q Consensus       200 L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  231 (386)
                                 +..++.+..|++|.|++|+..
T Consensus       166 -----------pkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  166 -----------PKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             -----------cHHHHHHHHHHHHhcccceee
Confidence                       445666778888888887543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.52  E-value=2.1e-15  Score=145.89  Aligned_cols=270  Identities=20%  Similarity=0.182  Sum_probs=189.8

Q ss_pred             CccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcC
Q 040192           55 NVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLS  133 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  133 (386)
                      +|..|++++|.+..+|.- ..+++|+.|.++.| .+...|.+ ...+.+|+++++..+ ....+|..+..+.+|++|+++
T Consensus        46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccc
Confidence            688899999998888766 78889999999988 88888866 688999999999888 888889888899999999999


Q ss_pred             CCCCCcccHhhhccCCCCEEEccCCccccccchh---------------hhcCCCCCcE-EEEeccCCccccCCCcCccc
Q 040192          134 NTGIAELPKELNALVNLTCLNLEETWRLTVIPRR---------------LISSFSSLHV-LRIFGSGYSYSDGMIGNGEF  197 (386)
Q Consensus       134 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~---------------~l~~l~~L~~-L~l~~~~~~~~~~~~~l~~L  197 (386)
                      +|.+...|..+..+..++.+..++|..+..++..               +......+++ |++++|.+. ......+.+|
T Consensus       123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~~dls~~~~l  201 (1081)
T KOG0618|consen  123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-VLDLSNLANL  201 (1081)
T ss_pred             hhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh-hhhhhhccch
Confidence            9988888877777777777777766333322221               1122233444 666666665 2233444444


Q ss_pred             cccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCC
Q 040192          198 EQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPN  276 (386)
Q Consensus       198 ~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~  276 (386)
                      +.+. .++.+..    ..-.-++|+.|+...|.... .....           ...+|+.++++.+....-..|++.+++
T Consensus       202 ~~l~c~rn~ls~----l~~~g~~l~~L~a~~n~l~~-~~~~p-----------~p~nl~~~dis~n~l~~lp~wi~~~~n  265 (1081)
T KOG0618|consen  202 EVLHCERNQLSE----LEISGPSLTALYADHNPLTT-LDVHP-----------VPLNLQYLDISHNNLSNLPEWIGACAN  265 (1081)
T ss_pred             hhhhhhhcccce----EEecCcchheeeeccCccee-ecccc-----------ccccceeeecchhhhhcchHHHHhccc
Confidence            4443 1111110    01112577777777776552 22222           678999999999853333467889999


Q ss_pred             CcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCCccccc
Q 040192          277 LKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAK  355 (386)
Q Consensus       277 L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~  355 (386)
                      |+.+...+ +.+..++.        .+...++|+.|.+..| .++-++.....+.+|+.|++.. ++|..+|.....+.
T Consensus       266 le~l~~n~-N~l~~lp~--------ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~  333 (1081)
T KOG0618|consen  266 LEALNANH-NRLVALPL--------RISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVL  333 (1081)
T ss_pred             ceEecccc-hhHHhhHH--------HHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehh-ccccccchHHHhhh
Confidence            99999998 44666665        4456688999999888 7888887777789999999977 68888887655443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.48  E-value=1.7e-13  Score=136.27  Aligned_cols=230  Identities=20%  Similarity=0.266  Sum_probs=168.2

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN  134 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  134 (386)
                      +.+.|.+++++++.+|.. -.++|+.|++++| .+..+|...+   .+|++|++++| .+..+|..+.  .+|+.|++++
T Consensus       179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N-~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        179 NKTELRLKILGLTTIPAC-IPEQITTLILDNN-ELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI  250 (754)
T ss_pred             CceEEEeCCCCcCcCCcc-cccCCcEEEecCC-CCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence            567888888888887764 1357899999998 7888887633   58999999988 7888876543  4789999999


Q ss_pred             CCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccccc
Q 040192          135 TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSAL  214 (386)
Q Consensus       135 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l  214 (386)
                      |.+..+|..+.  .+|+.|++++| .+..+|.. +.  .+|+.|++++|.+....                      ..+
T Consensus       251 N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~LP----------------------~~l  302 (754)
T PRK15370        251 NRITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRTLP----------------------AHL  302 (754)
T ss_pred             CccCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCccccCc----------------------ccc
Confidence            99998887654  58999999988 55677764 32  58999999988766541                      111


Q ss_pred             ccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhcc
Q 040192          215 ADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSD  294 (386)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~  294 (386)
                        .++|+.|++++|+... ++ ..           .+++|+.|++++| .++.++.. -+++|+.|++++|. ++.++. 
T Consensus       303 --p~sL~~L~Ls~N~Lt~-LP-~~-----------l~~sL~~L~Ls~N-~Lt~LP~~-l~~sL~~L~Ls~N~-L~~LP~-  363 (754)
T PRK15370        303 --PSGITHLNVQSNSLTA-LP-ET-----------LPPGLKTLEAGEN-ALTSLPAS-LPPELQVLDVSKNQ-ITVLPE-  363 (754)
T ss_pred             --hhhHHHHHhcCCcccc-CC-cc-----------ccccceeccccCC-ccccCChh-hcCcccEEECCCCC-CCcCCh-
Confidence              2468888888875542 22 11           4578999999999 56666531 23799999999965 665543 


Q ss_pred             CcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCCcc
Q 040192          295 VPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSN  352 (386)
Q Consensus       295 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~  352 (386)
                               ...++|++|+|++| .+..+|...  .++|+.|++++ ++|+.+|....
T Consensus       364 ---------~lp~~L~~LdLs~N-~Lt~LP~~l--~~sL~~LdLs~-N~L~~LP~sl~  408 (754)
T PRK15370        364 ---------TLPPTITTLDVSRN-ALTNLPENL--PAALQIMQASR-NNLVRLPESLP  408 (754)
T ss_pred             ---------hhcCCcCEEECCCC-cCCCCCHhH--HHHHHHHhhcc-CCcccCchhHH
Confidence                     12378999999999 677776543  24799999998 57888887543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.48  E-value=3.9e-13  Score=133.17  Aligned_cols=233  Identities=24%  Similarity=0.211  Sum_probs=170.3

Q ss_pred             cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192           32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA  111 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  111 (386)
                      ....+.+.++.+..+|..  .+ +|++|++++|.++.+|..  .++|+.|++++| .+..++..    ...|+.|++.+|
T Consensus       223 ~L~~L~L~~N~Lt~LP~l--p~-~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N-~L~~Lp~l----p~~L~~L~Ls~N  292 (788)
T PRK15387        223 HITTLVIPDNNLTSLPAL--PP-ELRTLEVSGNQLTSLPVL--PPGLLELSIFSN-PLTHLPAL----PSGLCKLWIFGN  292 (788)
T ss_pred             CCCEEEccCCcCCCCCCC--CC-CCcEEEecCCccCcccCc--ccccceeeccCC-chhhhhhc----hhhcCEEECcCC
Confidence            356788888889888863  34 999999999999988754  468999999998 67766642    356888999999


Q ss_pred             ccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCC
Q 040192          112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGM  191 (386)
Q Consensus       112 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  191 (386)
                       .+..+|..   .++|+.|++++|.++.+|..   ..+|+.|++++| .+..+|.  +  ..+|+.|++++|.+..... 
T Consensus       293 -~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~--l--p~~Lq~LdLS~N~Ls~LP~-  359 (788)
T PRK15387        293 -QLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN-QLTSLPT--L--PSGLQELSVSDNQLASLPT-  359 (788)
T ss_pred             -cccccccc---ccccceeECCCCccccCCCC---cccccccccccC-ccccccc--c--ccccceEecCCCccCCCCC-
Confidence             88888753   47899999999999988753   346888889888 5566664  1  2579999999998887522 


Q ss_pred             CcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc
Q 040192          192 IGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF  270 (386)
Q Consensus       192 ~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  270 (386)
                       ...+|..|. ..+.+.+ .+.   .+.+|+.|++++|+... ++  .           ..++|+.|++++| .++.++.
T Consensus       360 -lp~~L~~L~Ls~N~L~~-LP~---l~~~L~~LdLs~N~Lt~-LP--~-----------l~s~L~~LdLS~N-~LssIP~  419 (788)
T PRK15387        360 -LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP--V-----------LPSELKELMVSGN-RLTSLPM  419 (788)
T ss_pred             -CCcccceehhhcccccc-Ccc---cccccceEEecCCcccC-CC--C-----------cccCCCEEEccCC-cCCCCCc
Confidence             234555554 2222222 111   13579999999986542 21  1           3468999999999 5776664


Q ss_pred             ccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccc
Q 040192          271 LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLP  318 (386)
Q Consensus       271 l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  318 (386)
                      .  +.+|+.|++++ +.++.++.        .+..+++|+.|+|++++
T Consensus       420 l--~~~L~~L~Ls~-NqLt~LP~--------sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        420 L--PSGLLSLSVYR-NQLTRLPE--------SLIHLSSETTVNLEGNP  456 (788)
T ss_pred             c--hhhhhhhhhcc-CcccccCh--------HHhhccCCCeEECCCCC
Confidence            3  45789999998 44787754        56778999999999984

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.41  E-value=5.5e-15  Score=116.17  Aligned_cols=150  Identities=30%  Similarity=0.459  Sum_probs=134.6

Q ss_pred             ccEEEEcCCCCCCC-CcccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSET-PDVRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~-p~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...++++.+.+..+ |.++.+. +++.|++.+|+++++|.. +.+++|+.|.+.-| .+...|.+ |+.++.|++|++..
T Consensus        35 ITrLtLSHNKl~~vppnia~l~-nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprg-fgs~p~levldlty  111 (264)
T KOG0617|consen   35 ITRLTLSHNKLTVVPPNIAELK-NLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRG-FGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhcccCceeecCCcHHHhh-hhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccc-cCCCchhhhhhccc
Confidence            45677777788777 5689999 999999999999999887 99999999999988 88888988 89999999999998


Q ss_pred             Ccccc--ccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192          111 AIRLY--SFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       111 ~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      + ++.  .+|..|..++.|+-|.++.|.+.-+|..++.+++|+.|.+.+| .+-.+|.+ ++.+..|++|++.+|.++..
T Consensus       112 n-nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~vl  188 (264)
T KOG0617|consen  112 N-NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLTVL  188 (264)
T ss_pred             c-ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceeeec
Confidence            8 665  4688888899999999999999999999999999999999999 66788887 99999999999999988775

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.38  E-value=9.1e-15  Score=129.09  Aligned_cols=122  Identities=25%  Similarity=0.358  Sum_probs=100.3

Q ss_pred             CCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcCC-CCCCcccH-hhhccCCCCEE
Q 040192           77 YLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLSN-TGIAELPK-ELNALVNLTCL  153 (386)
Q Consensus        77 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~-~~i~~l~~-~~~~l~~L~~L  153 (386)
                      .-..+++..| .++.+|+++|+.+++|+.|++++| .++.+ |.+|..+.++..|-+.+ |+|+++|. .++.+..|+.|
T Consensus        68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccC-CcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            5667889999 999999999999999999999999 99988 88999998877776666 89999984 67889999999


Q ss_pred             EccCCccccccchhhhcCCCCCcEEEEeccCCccc--cCCCcCccccccc
Q 040192          154 NLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS--DGMIGNGEFEQLC  201 (386)
Q Consensus       154 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~  201 (386)
                      .+..| .+.-++..++..+++|..|.+.+|.+...  .....+..++.+.
T Consensus       146 llNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh  194 (498)
T KOG4237|consen  146 LLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH  194 (498)
T ss_pred             hcChh-hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence            99888 55667777799999999999999877665  2344444454443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.29  E-value=1.2e-12  Score=120.00  Aligned_cols=256  Identities=20%  Similarity=0.122  Sum_probs=146.9

Q ss_pred             ccccccCccEEEecCCcccc-----cCCC-CCCCCCcEEecccCcCCCcCC------hhhhcCCCcCceecccCCcccc-
Q 040192           49 VRKWEKNVRRLSLMENQIEN-----LSEV-PTCPYLRTLFLNNNAPLRRID------SGFFQSMPRLNVLNLSGAIRLY-  115 (386)
Q Consensus        49 ~~~~~~~L~~L~l~~~~~~~-----~~~~-~~~~~L~~L~l~~~~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~-  115 (386)
                      +..+. +++.+.+.++.++.     ++.. ...++++.++++++ .++..+      ...+..+++|+.|+++++ .+. 
T Consensus        19 ~~~l~-~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~   95 (319)
T cd00116          19 LPKLL-CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGP   95 (319)
T ss_pred             HHHHh-hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCC-CCCh
Confidence            44555 68888888888744     2222 56677888888877 443211      123556778888888887 554 


Q ss_pred             ccchhhcCCC---ccCEEEcCCCCCCc-----ccHhhhcc-CCCCEEEccCCcccc----ccchhhhcCCCCCcEEEEec
Q 040192          116 SFPLGISKLI---SLQHLDLSNTGIAE-----LPKELNAL-VNLTCLNLEETWRLT----VIPRRLISSFSSLHVLRIFG  182 (386)
Q Consensus       116 ~~~~~~~~l~---~L~~L~l~~~~i~~-----l~~~~~~l-~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~~L~l~~  182 (386)
                      ..+..+..+.   +|+.|++++|.++.     +...+..+ ++|+.|++++|....    .+.. .+..+++|++|++++
T Consensus        96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~  174 (319)
T cd00116          96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLAN  174 (319)
T ss_pred             hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcC
Confidence            3344444444   38888888887762     22344555 788888888885432    1222 256667788888888


Q ss_pred             cCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchh---cccccccccCccccccCcccEEEe
Q 040192          183 SGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELK---MDYKSVVQNTGQSFVFHSLKKFQI  259 (386)
Q Consensus       183 ~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~L~l  259 (386)
                      |.+.+.. ..   .             ....+..+++|++|++++|.......   ...+.         .+++|++|++
T Consensus       175 n~l~~~~-~~---~-------------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~---------~~~~L~~L~l  228 (319)
T cd00116         175 NGIGDAG-IR---A-------------LAEGLKANCNLEVLDLNNNGLTDEGASALAETLA---------SLKSLEVLNL  228 (319)
T ss_pred             CCCchHH-HH---H-------------HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc---------ccCCCCEEec
Confidence            7666430 00   0             01223345688888888875532111   11111         5678888888


Q ss_pred             cCCCCCCcc--ccc-c----CCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccccccccc-----CCC
Q 040192          260 SYCKELKDL--TFL-I----FAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIY-----RKP  327 (386)
Q Consensus       260 ~~~~~l~~~--~~l-~----~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-----~~~  327 (386)
                      ++| .+++.  ..+ .    ..+.|++|++.+|. +++......   ...+..+++|+.++++++ .+.+..     ...
T Consensus       229 s~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l---~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~  302 (319)
T cd00116         229 GDN-NLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDL---AEVLAEKESLLELDLRGN-KFGEEGAQLLAESL  302 (319)
T ss_pred             CCC-cCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHH---HHHHhcCCCccEEECCCC-CCcHHHHHHHHHHH
Confidence            888 45542  111 1    23688888888865 432111000   013344578888888887 343221     112


Q ss_pred             cCC-CCccEEeecC
Q 040192          328 LPF-PHLKEMKVIH  340 (386)
Q Consensus       328 ~~~-~~L~~L~i~~  340 (386)
                      ..+ +.|++++|.+
T Consensus       303 ~~~~~~~~~~~~~~  316 (319)
T cd00116         303 LEPGNELESLWVKD  316 (319)
T ss_pred             hhcCCchhhcccCC
Confidence            223 6777777755

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.25  E-value=5.8e-12  Score=115.39  Aligned_cols=255  Identities=20%  Similarity=0.182  Sum_probs=163.2

Q ss_pred             ccEEEEcCCCCCC-----CCc-ccccccCccEEEecCCcccc-------cC-CCCCCCCCcEEecccCcCCCcCChhhhc
Q 040192           33 EEHLVYAGAGLSE-----TPD-VRKWEKNVRRLSLMENQIEN-------LS-EVPTCPYLRTLFLNNNAPLRRIDSGFFQ   98 (386)
Q Consensus        33 ~~~l~~~~~~l~~-----~p~-~~~~~~~L~~L~l~~~~~~~-------~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~   98 (386)
                      ...+.+.+..+..     ++. +...+ +++++.++++.+..       ++ ....+++|+.|++++| .+.......+.
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~  102 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDGCGVLE  102 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhHHHHHH
Confidence            5566666666532     222 34445 79999999887762       11 1256889999999998 55433333244


Q ss_pred             CCC---cCceecccCCccccc-----cchhhcCC-CccCEEEcCCCCCC-----cccHhhhccCCCCEEEccCCccccc-
Q 040192           99 SMP---RLNVLNLSGAIRLYS-----FPLGISKL-ISLQHLDLSNTGIA-----ELPKELNALVNLTCLNLEETWRLTV-  163 (386)
Q Consensus        99 ~l~---~L~~L~l~~~~~~~~-----~~~~~~~l-~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~l~~~~~~~~-  163 (386)
                      .+.   +|++|++++| .+..     +...+..+ ++|+.|++++|.++     .++..+..+.+|+.|++++|..... 
T Consensus       103 ~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         103 SLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            444   4999999998 6652     23345566 89999999999887     3344566778999999999954322 


Q ss_pred             ---cchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhccccc
Q 040192          164 ---IPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKS  240 (386)
Q Consensus       164 ---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  240 (386)
                         ++.. +..+++|++|++++|.+.+.. ...                ....+..+++|++|++++|.... .....+.
T Consensus       182 ~~~l~~~-l~~~~~L~~L~L~~n~i~~~~-~~~----------------l~~~~~~~~~L~~L~ls~n~l~~-~~~~~l~  242 (319)
T cd00116         182 IRALAEG-LKANCNLEVLDLNNNGLTDEG-ASA----------------LAETLASLKSLEVLNLGDNNLTD-AGAAALA  242 (319)
T ss_pred             HHHHHHH-HHhCCCCCEEeccCCccChHH-HHH----------------HHHHhcccCCCCEEecCCCcCch-HHHHHHH
Confidence               2222 556689999999999876541 000                12335567899999999986543 2222221


Q ss_pred             ccccCccccccCcccEEEecCCCCCCcc------ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcc-cccceee
Q 040192          241 VVQNTGQSFVFHSLKKFQISYCKELKDL------TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPF-AQFHFLC  313 (386)
Q Consensus       241 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~------~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~-~~L~~L~  313 (386)
                      .....    ..+.|++|++++| .+++.      ..+..+++|+.++++++. +.+......+   .....+ +.|++|+
T Consensus       243 ~~~~~----~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~---~~~~~~~~~~~~~~  313 (319)
T cd00116         243 SALLS----PNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLA---ESLLEPGNELESLW  313 (319)
T ss_pred             HHHhc----cCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHH---HHHhhcCCchhhcc
Confidence            10000    2479999999999 45531      234556899999999965 5544221110   133444 6888888


Q ss_pred             ecccc
Q 040192          314 FSYLP  318 (386)
Q Consensus       314 l~~~~  318 (386)
                      +.+.+
T Consensus       314 ~~~~~  318 (319)
T cd00116         314 VKDDS  318 (319)
T ss_pred             cCCCC
Confidence            87653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.25  E-value=1.9e-11  Score=123.82  Aligned_cols=296  Identities=22%  Similarity=0.289  Sum_probs=185.9

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCc--ccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecc
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQ--IENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNL  108 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~--~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  108 (386)
                      ..++.+.+.....++.-...+ ++++|-+..+.  +..++.  +..++.|+.|++++|..+..+|.. ++.+.+||+|++
T Consensus       525 ~rr~s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L  602 (889)
T KOG4658|consen  525 VRRMSLMNNKIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDL  602 (889)
T ss_pred             eeEEEEeccchhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-Hhhhhhhhcccc
Confidence            566777777777776666666 89999999986  555555  388999999999999778889988 799999999999


Q ss_pred             cCCccccccchhhcCCCccCEEEcCCCCCC-cccHhhhccCCCCEEEccCCc-cccccchhhhcCCCCCcEEEEeccCC-
Q 040192          109 SGAIRLYSFPLGISKLISLQHLDLSNTGIA-ELPKELNALVNLTCLNLEETW-RLTVIPRRLISSFSSLHVLRIFGSGY-  185 (386)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~-  185 (386)
                      +++ .+..+|..++++..|.+|++..+... .+|.....+.+|++|.+.... ..+.....-+..+.+|+.+....... 
T Consensus       603 ~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~  681 (889)
T KOG4658|consen  603 SDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL  681 (889)
T ss_pred             cCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH
Confidence            999 99999999999999999999987644 445556669999999886653 11111111133444444444332211 


Q ss_pred             --------------------------ccccCCCcCccccccc-ceeecC-----Cccccccc-cccCCcEEEeeccCCcc
Q 040192          186 --------------------------SYSDGMIGNGEFEQLC-GFRRSK-----SLDVSALA-DLKRLNRLKIAECYGLA  232 (386)
Q Consensus       186 --------------------------~~~~~~~~l~~L~~L~-~~~~~~-----~~~~~~l~-~~~~L~~L~l~~~~~~~  232 (386)
                                                +.......+++|+.|. ......     ........ .++++..+.+.+|....
T Consensus       682 ~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r  761 (889)
T KOG4658|consen  682 LLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR  761 (889)
T ss_pred             hHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc
Confidence                                      0012233444444444 111110     00001111 14456666666666555


Q ss_pred             chhcccccccccCccccccCcccEEEecCCCCCCcc-ccccCCCCCcEEeecCCCccchhh-ccCcccccCCCCcccccc
Q 040192          233 ELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL-TFLIFAPNLKSIEVDSCYALEEIV-SDVPEVMMGNLNPFAQFH  310 (386)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~c~~~~~~~-~~~~~~~~~~~~~~~~L~  310 (386)
                      +.  .|..         ..++|+.|.+..|..++++ +....+..++.+.+.. ....... .       ...+.|+++.
T Consensus       762 ~l--~~~~---------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f-~~~~~l~~~-------~~l~~l~~i~  822 (889)
T KOG4658|consen  762 DL--TWLL---------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPF-NKLEGLRML-------CSLGGLPQLY  822 (889)
T ss_pred             cc--chhh---------ccCcccEEEEecccccccCCCHHHHhhhcccEEecc-cccccceee-------ecCCCCceeE
Confidence            33  3322         6899999999999888875 4455555555544433 2233331 2       2445555555


Q ss_pred             eeeeccccccccccCCC----cCCCCccEEeecCc-ccCcCCCCCc
Q 040192          311 FLCFSYLPNLKSIYRKP----LPFPHLKEMKVIHC-LKLKKLPLDS  351 (386)
Q Consensus       311 ~L~l~~~~~l~~~~~~~----~~~~~L~~L~i~~c-~~L~~l~~~~  351 (386)
                      .+.+..- .+.++....    ..+|.+..+.+.+| +.+..+|...
T Consensus       823 ~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~  867 (889)
T KOG4658|consen  823 WLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGE  867 (889)
T ss_pred             ecccCcc-chhheehhcCcccccCccccccceeccccceeecCCcc
Confidence            5555544 244443332    45788888889887 8888888763

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.22  E-value=6.7e-13  Score=118.29  Aligned_cols=278  Identities=15%  Similarity=0.166  Sum_probs=161.8

Q ss_pred             CccEEEecCCcccccCCC----CCCCCCcEEecccCcCCCcCC-hhhhcCCCcCceecccCCcccccc-ch-hhcCCCcc
Q 040192           55 NVRRLSLMENQIENLSEV----PTCPYLRTLFLNNNAPLRRID-SGFFQSMPRLNVLNLSGAIRLYSF-PL-GISKLISL  127 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~-~~~~l~~L  127 (386)
                      .++.|++.|+.-....+.    ..|++++.|.+.+|..+.+.. .++...|+.|+++++..|..++.. .. ....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            578899988854443333    789999999999986555433 234567899999999987666643 22 33568889


Q ss_pred             CEEEcCCCC-CC--cccHhhhccCCCCEEEccCCccccccchhhh----cCCCCCcEEEEeccCCcccc----CCCcCcc
Q 040192          128 QHLDLSNTG-IA--ELPKELNALVNLTCLNLEETWRLTVIPRRLI----SSFSSLHVLRIFGSGYSYSD----GMIGNGE  196 (386)
Q Consensus       128 ~~L~l~~~~-i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~~----~~~~l~~  196 (386)
                      .+++++.+. ++  .+......+++++.+.+.+|   ...+.+++    ..+..+.++++..|......    .......
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC---~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC---LELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhccc---ccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            999998874 33  34444566777888877787   33333323    45556777776666443331    1123344


Q ss_pred             ccccc--ceeecCCccccccc-cccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc--c-
Q 040192          197 FEQLC--GFRRSKSLDVSALA-DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT--F-  270 (386)
Q Consensus       197 L~~L~--~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~-  270 (386)
                      |+.+.  ++....+.....+. +..+|+.+.+.+|+...+......+.        +++.|+.+++..|..+.+-.  . 
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r--------n~~~Le~l~~e~~~~~~d~tL~sl  367 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR--------NCPHLERLDLEECGLITDGTLASL  367 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc--------CChhhhhhcccccceehhhhHhhh
Confidence            44444  22222222222222 35666667776666666555555554        56666666666665444431  1 


Q ss_pred             ccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCC-CcCCCCccEEeecCcccCcC
Q 040192          271 LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRK-PLPFPHLKEMKVIHCLKLKK  346 (386)
Q Consensus       271 l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~  346 (386)
                      ...++.|+++.++.|..+++.......   ....+...|+.+.+.+||.+.+-... ...+++|+.+++.+|..+.+
T Consensus       368 s~~C~~lr~lslshce~itD~gi~~l~---~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  368 SRNCPRLRVLSLSHCELITDEGIRHLS---SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK  441 (483)
T ss_pred             ccCCchhccCChhhhhhhhhhhhhhhh---hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence            234566777777666666655221111   12234556666666666665543222 33466666666666655554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.20  E-value=1.8e-11  Score=100.01  Aligned_cols=138  Identities=30%  Similarity=0.370  Sum_probs=54.1

Q ss_pred             CCCCCCCcccccccCccEEEecCCcccccCCCC-CCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccch
Q 040192           41 AGLSETPDVRKWEKNVRRLSLMENQIENLSEVP-TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPL  119 (386)
Q Consensus        41 ~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  119 (386)
                      ..++.+|.+.... ++++|++++|.++.+...+ .+.+|+.|++++| .+..+..  +..++.|++|++++| .++.+..
T Consensus         7 ~~i~~~~~~~n~~-~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~   81 (175)
T PF14580_consen    7 NMIEQIAQYNNPV-KLRELNLRGNQISTIENLGATLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNN-RISSISE   81 (175)
T ss_dssp             ------------------------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS----S-CH
T ss_pred             ccccccccccccc-ccccccccccccccccchhhhhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCC-CCCcccc
Confidence            3445555555556 7899999999999987774 6899999999999 8887765  778999999999999 8888765


Q ss_pred             hh-cCCCccCEEEcCCCCCCccc--HhhhccCCCCEEEccCCccccc--cchhhhcCCCCCcEEEEecc
Q 040192          120 GI-SKLISLQHLDLSNTGIAELP--KELNALVNLTCLNLEETWRLTV--IPRRLISSFSSLHVLRIFGS  183 (386)
Q Consensus       120 ~~-~~l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~  183 (386)
                      .+ ..+++|+.|++++|.+..+.  ..+..+++|+.|++.+|+....  ....++..+|+|+.||-...
T Consensus        82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            55 46899999999999887543  4567889999999999865433  22345678899998886553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=7.9e-12  Score=112.13  Aligned_cols=205  Identities=22%  Similarity=0.250  Sum_probs=108.1

Q ss_pred             ccccCccEEEecCCcccccCC--C-CCCCCCcEEecccCcCCCcCC--hhhhcCCCcCceecccCCccccccch--hhcC
Q 040192           51 KWEKNVRRLSLMENQIENLSE--V-PTCPYLRTLFLNNNAPLRRID--SGFFQSMPRLNVLNLSGAIRLYSFPL--GISK  123 (386)
Q Consensus        51 ~~~~~L~~L~l~~~~~~~~~~--~-~~~~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~  123 (386)
                      ++. +|+.+++.++.+...+.  . ..|++++.|+++.| .+..+.  ..+...+|+|+.|+++.| ++.....  .-..
T Consensus       119 n~k-kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~  195 (505)
T KOG3207|consen  119 NLK-KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLL  195 (505)
T ss_pred             hHH-hhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhh
Confidence            344 67777777776665442  2 66777777777776 443321  234556777777777766 5443211  1134


Q ss_pred             CCccCEEEcCCCCCC--cccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCccccccc
Q 040192          124 LISLQHLDLSNTGIA--ELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLC  201 (386)
Q Consensus       124 l~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  201 (386)
                      +++|+.|.++.|+++  .+......+++|+.|++.+|..+...... ..-+..|+.|++++|++.....           
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~-----------  263 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQ-----------  263 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccccc-----------
Confidence            566777777777665  33334455677777777766321111111 3445567777777776665411           


Q ss_pred             ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc---cccCCCCCc
Q 040192          202 GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT---FLIFAPNLK  278 (386)
Q Consensus       202 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~l~~l~~L~  278 (386)
                               ......++.|+.|+++.+...+-..+..-.    .+-.+.+++|+.|++..|+ +.+++   .+..+++|+
T Consensus       264 ---------~~~~~~l~~L~~Lnls~tgi~si~~~d~~s----~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk  329 (505)
T KOG3207|consen  264 ---------GYKVGTLPGLNQLNLSSTGIASIAEPDVES----LDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLK  329 (505)
T ss_pred             ---------ccccccccchhhhhccccCcchhcCCCccc----hhhhcccccceeeecccCc-cccccccchhhccchhh
Confidence                     112233455666666655433311111100    0001156777777777773 43333   334456666


Q ss_pred             EEeecC
Q 040192          279 SIEVDS  284 (386)
Q Consensus       279 ~L~l~~  284 (386)
                      .|.+..
T Consensus       330 ~l~~~~  335 (505)
T KOG3207|consen  330 HLRITL  335 (505)
T ss_pred             hhhccc
Confidence            666544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=1.1e-10  Score=95.51  Aligned_cols=123  Identities=28%  Similarity=0.381  Sum_probs=57.8

Q ss_pred             cccEEEEcCCCCCCCCccc-ccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           32 KEEHLVYAGAGLSETPDVR-KWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      +...+.+.|..+..+..+. .+. +++.|++++|.+..++....+++|++|++++| .+..++..+...+++|++|++++
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~~~l~-~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLGATLD-KLEVLDLSNNQITKLEGLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             ----------------S--TT-T-T--EEE-TTS--S--TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TT
T ss_pred             ccccccccccccccccchhhhhc-CCCEEECCCCCCccccCccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcC
Confidence            4677888999998887776 466 89999999999999998899999999999999 88888766445799999999999


Q ss_pred             Ccccccc--chhhcCCCccCEEEcCCCCCCccc----HhhhccCCCCEEEccC
Q 040192          111 AIRLYSF--PLGISKLISLQHLDLSNTGIAELP----KELNALVNLTCLNLEE  157 (386)
Q Consensus       111 ~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~l~----~~~~~l~~L~~L~l~~  157 (386)
                      | .+..+  -..+..+++|+.|++.+|+++..+    ..+..+++|+.||-..
T Consensus        98 N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   98 N-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             S----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             C-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            9 88765  245678999999999999998555    3577899999998543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=2.1e-11  Score=109.44  Aligned_cols=205  Identities=16%  Similarity=0.157  Sum_probs=102.9

Q ss_pred             CCCCCCcEEecccCcCCCcCCh-hhhcCCCcCceecccCCcccccc---chhhcCCCccCEEEcCCCCCCcccH--hhhc
Q 040192           73 PTCPYLRTLFLNNNAPLRRIDS-GFFQSMPRLNVLNLSGAIRLYSF---PLGISKLISLQHLDLSNTGIAELPK--ELNA  146 (386)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~l~~--~~~~  146 (386)
                      .++.+|+.+.+.++ ..+..+. +....|++++.|++++| -+..+   ......+++|+.|+++.|.+.....  .-..
T Consensus       118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            55666666666665 4444432 33556777777777666 44432   2334556667777776665542211  1124


Q ss_pred             cCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEee
Q 040192          147 LVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIA  226 (386)
Q Consensus       147 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~  226 (386)
                      ++.|+.|.++.|.....--..++..+|+|+.|++.+|.....                     ......-+..|+.|+++
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~---------------------~~~~~~i~~~L~~LdLs  254 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI---------------------KATSTKILQTLQELDLS  254 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce---------------------ecchhhhhhHHhhcccc
Confidence            455666666666332221122345566666666666531111                     01112223456666666


Q ss_pred             ccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc--------ccCCCCCcEEeecCCCccchhhccCccc
Q 040192          227 ECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF--------LIFAPNLKSIEVDSCYALEEIVSDVPEV  298 (386)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--------l~~l~~L~~L~l~~c~~~~~~~~~~~~~  298 (386)
                      +|+.+..-.....+         .++.|+.|+++.| +++++..        ...+++|+.|++..++ +.++..-    
T Consensus       255 ~N~li~~~~~~~~~---------~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl----  319 (505)
T KOG3207|consen  255 NNNLIDFDQGYKVG---------TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSL----  319 (505)
T ss_pred             CCcccccccccccc---------cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc-ccccccc----
Confidence            66555422112222         5666676766666 4544321        2345666666666633 5444332    


Q ss_pred             ccCCCCcccccceeeeccc
Q 040192          299 MMGNLNPFAQFHFLCFSYL  317 (386)
Q Consensus       299 ~~~~~~~~~~L~~L~l~~~  317 (386)
                        ..+..+++|+.|.+-..
T Consensus       320 --~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  320 --NHLRTLENLKHLRITLN  336 (505)
T ss_pred             --chhhccchhhhhhcccc
Confidence              23444555555554433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=3.3e-12  Score=109.23  Aligned_cols=182  Identities=23%  Similarity=0.226  Sum_probs=132.0

Q ss_pred             CccCEEEcCCCCCC--cccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCC-ccccCCCcCccccccc
Q 040192          125 ISLQHLDLSNTGIA--ELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGY-SYSDGMIGNGEFEQLC  201 (386)
Q Consensus       125 ~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~  201 (386)
                      ..|+++|+++..++  .+-..+..|.+|+.|.+.+.+.-+.+... +..-.+|+.|+++++.- ++.             
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n-------------  250 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTEN-------------  250 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccchh-------------
Confidence            35888999888776  44456678888999999888665666655 77888899999988632 222             


Q ss_pred             ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCC---CCccccc-cCCCCC
Q 040192          202 GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKE---LKDLTFL-IFAPNL  277 (386)
Q Consensus       202 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---l~~~~~l-~~l~~L  277 (386)
                             ....-+.++..|.+|++++|....+.....+.        |--++|.+|+|+||..   ..++..+ ..+|+|
T Consensus       251 -------~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~--------hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l  315 (419)
T KOG2120|consen  251 -------ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA--------HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNL  315 (419)
T ss_pred             -------HHHHHHHhhhhHhhcCchHhhccchhhhHHHh--------hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCce
Confidence                   01233567889999999999776654222222        1468999999999863   2234443 679999


Q ss_pred             cEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccc-cccCCCcCCCCccEEeecCcc
Q 040192          278 KSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLK-SIYRKPLPFPHLKEMKVIHCL  342 (386)
Q Consensus       278 ~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~i~~c~  342 (386)
                      .+|+|++|..++.-..       ..+-.|+.|++|.+++|..+. +-.......|+|.+|++.+|-
T Consensus       316 ~~LDLSD~v~l~~~~~-------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  316 VHLDLSDSVMLKNDCF-------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeeccccccccCchHH-------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            9999999988887444       366778999999999998765 222356678999999998763

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.01  E-value=3.5e-11  Score=107.51  Aligned_cols=282  Identities=17%  Similarity=0.167  Sum_probs=180.0

Q ss_pred             CCCcEEecccCcCCCcCC-hhhhcCCCcCceecccCCcccccc--chhhcCCCccCEEEcCCC-CCCc--ccHhhhccCC
Q 040192           76 PYLRTLFLNNNAPLRRID-SGFFQSMPRLNVLNLSGAIRLYSF--PLGISKLISLQHLDLSNT-GIAE--LPKELNALVN  149 (386)
Q Consensus        76 ~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~-~i~~--l~~~~~~l~~  149 (386)
                      .-|+.|.+.++....+-+ ..+...+++++.|++.+|.++++-  -..-..+..|+++++..| .++.  +......|++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            467777777775444333 233457888888888887555532  222346777888888775 3342  2223346778


Q ss_pred             CCEEEccCCccccccc-hhhhcCCCCCcEEEEeccCCccc----cCCCcCccccccc--ceeecCCccccccc-cccCCc
Q 040192          150 LTCLNLEETWRLTVIP-RRLISSFSSLHVLRIFGSGYSYS----DGMIGNGEFEQLC--GFRRSKSLDVSALA-DLKRLN  221 (386)
Q Consensus       150 L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~--~~~~~~~~~~~~l~-~~~~L~  221 (386)
                      |.+++++-|..+..-. .....++..++.+...||.-.+.    ...+...++-.+.  .+..+.+.....+. .+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            8888887775544311 11245566666666665533322    1112222222222  33333333322222 367889


Q ss_pred             EEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc--cc-cCCCCCcEEeecCCCccchhhccCccc
Q 040192          222 RLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT--FL-IFAPNLKSIEVDSCYALEEIVSDVPEV  298 (386)
Q Consensus       222 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l-~~l~~L~~L~l~~c~~~~~~~~~~~~~  298 (386)
                      .+..++|....+.....++.        .+++|+.|.+++|...++..  .+ ..++.|+.+++..|..+.+....    
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~--------~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~----  365 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQ--------HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA----  365 (483)
T ss_pred             hhcccCCCCCchHHHHHHhc--------CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh----
Confidence            99999998887766666655        78999999999998887753  33 45789999999999888776332    


Q ss_pred             ccCCCCcccccceeeeccccccccc-----cCCCcCCCCccEEeecCcccCcCCCCCccc---ccCcceEEEchHHHHhh
Q 040192          299 MMGNLNPFAQFHFLCFSYLPNLKSI-----YRKPLPFPHLKEMKVIHCLKLKKLPLDSNR---AKERKIVIRGSRERWEQ  370 (386)
Q Consensus       299 ~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~---~~~~l~i~~~~~~~~~~  370 (386)
                        ....++|.|++|.+++|..+.+.     .....+...|+.+.+++||.+++--.....   ..++++.++|..-..+.
T Consensus       366 --sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~  443 (483)
T KOG4341|consen  366 --SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA  443 (483)
T ss_pred             --hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence              35567999999999999776654     334566899999999999988874332221   22778888888655555


Q ss_pred             h
Q 040192          371 L  371 (386)
Q Consensus       371 ~  371 (386)
                      +
T Consensus       444 i  444 (483)
T KOG4341|consen  444 I  444 (483)
T ss_pred             h
Confidence            4

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.93  E-value=4.7e-11  Score=110.57  Aligned_cols=194  Identities=24%  Similarity=0.332  Sum_probs=143.0

Q ss_pred             ccEEEEcCCCCCCCCcc---cccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecc
Q 040192           33 EEHLVYAGAGLSETPDV---RKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNL  108 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~---~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  108 (386)
                      ...+.+.+..+.+.|.-   ..+. .....+++-|.+..+|.. ..|..|..+.++.| .+..++.. +..+..|.++++
T Consensus        52 sg~l~Ls~rrlk~fpr~a~~~~lt-dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~-i~~L~~lt~l~l  128 (722)
T KOG0532|consen   52 SGRLLLSGRRLKEFPRGAASYDLT-DTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEA-ICNLEALTFLDL  128 (722)
T ss_pred             hcccccccchhhcCCCcccccccc-chhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchh-hhhhhHHHHhhh
Confidence            44566677777666531   2233 455678888888888877 77888888888888 88888877 678999999999


Q ss_pred             cCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192          109 SGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      +.| .+..+|..++.|+ |+.|-+++|+++.+|..++....|..|+.+.| .+..+|.. ++.+.+|+.|.++.|.+...
T Consensus       129 s~N-qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~~l  204 (722)
T KOG0532|consen  129 SSN-QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLEDL  204 (722)
T ss_pred             ccc-hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhhhC
Confidence            998 8888888888887 89999999999999988888888999999998 66777776 88999999999988877665


Q ss_pred             cCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc
Q 040192          189 DGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL  268 (386)
Q Consensus       189 ~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  268 (386)
                                            +..+..+ .|..|++++|+... ++..+.          .+..|+.|-|.+|+ +..+
T Consensus       205 ----------------------p~El~~L-pLi~lDfScNkis~-iPv~fr----------~m~~Lq~l~LenNP-LqSP  249 (722)
T KOG0532|consen  205 ----------------------PEELCSL-PLIRLDFSCNKISY-LPVDFR----------KMRHLQVLQLENNP-LQSP  249 (722)
T ss_pred             ----------------------CHHHhCC-ceeeeecccCceee-cchhhh----------hhhhheeeeeccCC-CCCC
Confidence                                  1222222 36666666665543 444443          56666666666664 4443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.90  E-value=2.1e-09  Score=101.56  Aligned_cols=189  Identities=26%  Similarity=0.355  Sum_probs=103.3

Q ss_pred             EEecCCcc-cccCCCCCCCCCcEEecccCcCCCcCChhhhcCCC-cCceecccCCccccccchhhcCCCccCEEEcCCCC
Q 040192           59 LSLMENQI-ENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMP-RLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTG  136 (386)
Q Consensus        59 L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  136 (386)
                      +....+.+ .........+.++.|++.++ .+.++++. ..... +|+.|+++++ .+..+|..++.+++|+.|++++|.
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCc-ccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence            44444444 22223344456666666666 55555554 33342 6666666666 666655555666666666666666


Q ss_pred             CCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccccccc
Q 040192          137 IAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALAD  216 (386)
Q Consensus       137 i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~  216 (386)
                      ++.+|...+..++|+.|+++++ .+..+|.. +.....|+.|.+..|.....                      +..+..
T Consensus       175 l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~~~~~----------------------~~~~~~  230 (394)
T COG4886         175 LSDLPKLLSNLSNLNNLDLSGN-KISDLPPE-IELLSALEELDLSNNSIIEL----------------------LSSLSN  230 (394)
T ss_pred             hhhhhhhhhhhhhhhheeccCC-ccccCchh-hhhhhhhhhhhhcCCcceec----------------------chhhhh
Confidence            6666655545666666666666 55566653 34444566666666532221                      222333


Q ss_pred             ccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCC
Q 040192          217 LKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCY  286 (386)
Q Consensus       217 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~  286 (386)
                      +.++..+.+.+++....  .....         .+++++.|++++| .+++++.++.+.+|+.|++++..
T Consensus       231 ~~~l~~l~l~~n~~~~~--~~~~~---------~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~  288 (394)
T COG4886         231 LKNLSGLELSNNKLEDL--PESIG---------NLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNS  288 (394)
T ss_pred             cccccccccCCceeeec--cchhc---------cccccceeccccc-cccccccccccCccCEEeccCcc
Confidence            44555555444443321  22222         4566777777776 46666556666777777776643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1.1e-10  Score=100.06  Aligned_cols=199  Identities=19%  Similarity=0.134  Sum_probs=137.3

Q ss_pred             CcCceecccCCccccc--cchhhcCCCccCEEEcCCCCCC-cccHhhhccCCCCEEEccCCccccccch-hhhcCCCCCc
Q 040192          101 PRLNVLNLSGAIRLYS--FPLGISKLISLQHLDLSNTGIA-ELPKELNALVNLTCLNLEETWRLTVIPR-RLISSFSSLH  176 (386)
Q Consensus       101 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~  176 (386)
                      ..|++||++.. .++.  +...+..|..|+.|++.++.+. .+-..++.-.+|+.++++.|..++.... -++.+|+.|.
T Consensus       185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            35888999877 6653  3345578889999999998877 4445677788999999999966655443 2467899999


Q ss_pred             EEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCc-cchhcccccccccCccccccCccc
Q 040192          177 VLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGL-AELKMDYKSVVQNTGQSFVFHSLK  255 (386)
Q Consensus       177 ~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~  255 (386)
                      .|+++.|.......-                 .....+  -++|..|+++++... .........+        .+|+|.
T Consensus       264 ~LNlsWc~l~~~~Vt-----------------v~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~--------rcp~l~  316 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVT-----------------VAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVR--------RCPNLV  316 (419)
T ss_pred             hcCchHhhccchhhh-----------------HHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHH--------hCCcee
Confidence            999999977665100                 001222  258899999887432 1112233322        799999


Q ss_pred             EEEecCCCCCCc--cccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCc
Q 040192          256 KFQISYCKELKD--LTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHL  333 (386)
Q Consensus       256 ~L~l~~~~~l~~--~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L  333 (386)
                      +|+++.|..+++  +..+-.++.|++|.++.|..+.--..       .-+...|+|.+|++.+|-.-+........+|+|
T Consensus       317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~-------~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~l  389 (419)
T KOG2120|consen  317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL-------LELNSKPSLVYLDVFGCVSDTTMELLKEMLSHL  389 (419)
T ss_pred             eeccccccccCchHHHHHHhcchheeeehhhhcCCChHHe-------eeeccCcceEEEEeccccCchHHHHHHHhCccc
Confidence            999999988876  23466789999999999987765443       356788999999999985433332223334444


Q ss_pred             c
Q 040192          334 K  334 (386)
Q Consensus       334 ~  334 (386)
                      +
T Consensus       390 k  390 (419)
T KOG2120|consen  390 K  390 (419)
T ss_pred             c
Confidence            3

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.81  E-value=7.4e-09  Score=97.78  Aligned_cols=192  Identities=22%  Similarity=0.313  Sum_probs=145.6

Q ss_pred             EEEcCCCC-CCCCcccccccCccEEEecCCcccccCCC-CCCC-CCcEEecccCcCCCcCChhhhcCCCcCceecccCCc
Q 040192           36 LVYAGAGL-SETPDVRKWEKNVRRLSLMENQIENLSEV-PTCP-YLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI  112 (386)
Q Consensus        36 l~~~~~~l-~~~p~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  112 (386)
                      +...+... .....+..+. .++.+.+.++.+..++.. .... +|+.|+++.| .+..++.. ++.++.|+.|++..| 
T Consensus        98 l~~~~~~~~~~~~~~~~~~-~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N-  173 (394)
T COG4886          98 LDLNLNRLRSNISELLELT-NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFN-  173 (394)
T ss_pred             eeccccccccCchhhhccc-ceeEEecCCcccccCccccccchhhccccccccc-chhhhhhh-hhccccccccccCCc-
Confidence            34444444 3334455556 799999999999999888 4553 9999999999 88887644 789999999999999 


Q ss_pred             cccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCC
Q 040192          113 RLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMI  192 (386)
Q Consensus       113 ~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  192 (386)
                      .+..+|...+..+.|+.|++++|.++.+|..+.....|+++.+++|+.+.....  +..+.++..+.+..+.+...    
T Consensus       174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~--~~~~~~l~~l~l~~n~~~~~----  247 (394)
T COG4886         174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS--LSNLKNLSGLELSNNKLEDL----  247 (394)
T ss_pred             hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchh--hhhcccccccccCCceeeec----
Confidence            999998877789999999999999999998877778899999999954444333  78888888888777766552    


Q ss_pred             cCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCc
Q 040192          193 GNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKD  267 (386)
Q Consensus       193 ~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  267 (386)
                                        +..+..+++++.|++++|.... +..  ++         ...+++.|+++++.....
T Consensus       248 ------------------~~~~~~l~~l~~L~~s~n~i~~-i~~--~~---------~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         248 ------------------PESIGNLSNLETLDLSNNQISS-ISS--LG---------SLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ------------------cchhccccccceeccccccccc-ccc--cc---------ccCccCEEeccCcccccc
Confidence                              2334556778888888886654 222  32         678888888888754433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.81  E-value=1.2e-09  Score=93.98  Aligned_cols=127  Identities=17%  Similarity=0.195  Sum_probs=97.8

Q ss_pred             CCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeec
Q 040192          148 VNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAE  227 (386)
Q Consensus       148 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~  227 (386)
                      ..|++++++.| .+..+..+ ..-++.++.|+++.|.+...                       ..++.+++|..|++++
T Consensus       284 q~LtelDLS~N-~I~~iDES-vKL~Pkir~L~lS~N~i~~v-----------------------~nLa~L~~L~~LDLS~  338 (490)
T KOG1259|consen  284 QELTELDLSGN-LITQIDES-VKLAPKLRRLILSQNRIRTV-----------------------QNLAELPQLQLLDLSG  338 (490)
T ss_pred             hhhhhcccccc-chhhhhhh-hhhccceeEEeccccceeee-----------------------hhhhhcccceEeeccc
Confidence            45777888887 56666654 67778888888888877665                       3466678999999999


Q ss_pred             cCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhccCcccccCCCCccc
Q 040192          228 CYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFA  307 (386)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~  307 (386)
                      |...+.  ..|-.         .+.+++.|++++| .+++++.++.+-+|..|++++ ++|+.+..-      ..++.+|
T Consensus       339 N~Ls~~--~Gwh~---------KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV------~~IG~LP  399 (490)
T KOG1259|consen  339 NLLAEC--VGWHL---------KLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSS-NQIEELDEV------NHIGNLP  399 (490)
T ss_pred             chhHhh--hhhHh---------hhcCEeeeehhhh-hHhhhhhhHhhhhheeccccc-cchhhHHHh------ccccccc
Confidence            865542  23322         6889999999999 688888888889999999998 558777553      5788899


Q ss_pred             ccceeeecccc
Q 040192          308 QFHFLCFSYLP  318 (386)
Q Consensus       308 ~L~~L~l~~~~  318 (386)
                      -|+.+.+.++|
T Consensus       400 CLE~l~L~~NP  410 (490)
T KOG1259|consen  400 CLETLRLTGNP  410 (490)
T ss_pred             HHHHHhhcCCC
Confidence            99999999886

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.79  E-value=2.9e-10  Score=105.47  Aligned_cols=212  Identities=19%  Similarity=0.196  Sum_probs=161.3

Q ss_pred             EEecCCcccccCCC---CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCC
Q 040192           59 LSLMENQIENLSEV---PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNT  135 (386)
Q Consensus        59 L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  135 (386)
                      |.+++-.+..+|-.   ..+..-...+++.| .+..+|.. +..+..|+.+.+..| .+..+|..++++..|.+++++.|
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N  131 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRN-RFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN  131 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhcccc-ccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc
Confidence            55666666665544   44555566888888 88888877 678889999999998 89999999999999999999999


Q ss_pred             CCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccc
Q 040192          136 GIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALA  215 (386)
Q Consensus       136 ~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~  215 (386)
                      +++.+|..+..++ |+.|-+++| .++.+|.. ++....|..|+.+.|.+...                      +..+.
T Consensus       132 qlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~nei~sl----------------------psql~  186 (722)
T KOG0532|consen  132 QLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKNEIQSL----------------------PSQLG  186 (722)
T ss_pred             hhhcCChhhhcCc-ceeEEEecC-ccccCCcc-cccchhHHHhhhhhhhhhhc----------------------hHHhh
Confidence            9999998888776 889999988 77889987 88889999999999877665                      34456


Q ss_pred             cccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc-cccCCCCCcEEeecCCCccchhhcc
Q 040192          216 DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT-FLIFAPNLKSIEVDSCYALEEIVSD  294 (386)
Q Consensus       216 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~c~~~~~~~~~  294 (386)
                      .+.+|+.|.+..|.... ++.+.           ..=.|.+|+++.| ++..+| .+..++.|++|.|.+++ +++-+.+
T Consensus       187 ~l~slr~l~vrRn~l~~-lp~El-----------~~LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNP-LqSPPAq  252 (722)
T KOG0532|consen  187 YLTSLRDLNVRRNHLED-LPEEL-----------CSLPLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNP-LQSPPAQ  252 (722)
T ss_pred             hHHHHHHHHHhhhhhhh-CCHHH-----------hCCceeeeecccC-ceeecchhhhhhhhheeeeeccCC-CCCChHH
Confidence            67788888888875543 54444           3457889999988 566655 47889999999999866 7665543


Q ss_pred             CcccccCCCCcccccceeeeccc
Q 040192          295 VPEVMMGNLNPFAQFHFLCFSYL  317 (386)
Q Consensus       295 ~~~~~~~~~~~~~~L~~L~l~~~  317 (386)
                      .     +.-+...-.|+|++..|
T Consensus       253 I-----C~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  253 I-----CEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             H-----Hhccceeeeeeecchhc
Confidence            1     12223344667777666

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.75  E-value=3.7e-09  Score=90.95  Aligned_cols=131  Identities=19%  Similarity=0.299  Sum_probs=74.3

Q ss_pred             ccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCc-ccc--ccchhhcCC
Q 040192           49 VRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI-RLY--SFPLGISKL  124 (386)
Q Consensus        49 ~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--~~~~~~~~l  124 (386)
                      +..+. ++..+.++.++-..+-.. ..-|.|+++.+... .+...+.  +-.+..  .-+..+.. ...  .....+-..
T Consensus       210 l~~f~-~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s-~~~~~~~--l~pe~~--~~D~~~~E~~t~~G~~~~~~dTW  283 (490)
T KOG1259|consen  210 LNAFR-NLKTLKFSALSTENIVDIELLKPTLQTICVHNT-TIQDVPS--LLPETI--LADPSGSEPSTSNGSALVSADTW  283 (490)
T ss_pred             hHHhh-hhheeeeeccchhheeceeecCchhheeeeecc-ccccccc--ccchhh--hcCccCCCCCccCCceEEecchH
Confidence            55566 888888888866655444 55667888877664 3332221  111111  11111110 000  111112233


Q ss_pred             CccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192          125 ISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       125 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      ..|..+|+++|.|+.+.+.+.-.+.++.|+++.| .+..+..  +..+++|.+|++++|.++..
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~Ls~~  344 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNLLAEC  344 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh--hhhcccceEeecccchhHhh
Confidence            5567777777777777666666777777777777 4444544  67777777777777766554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.75  E-value=2e-09  Score=94.29  Aligned_cols=237  Identities=16%  Similarity=0.147  Sum_probs=124.4

Q ss_pred             ccccccCccEEEecCCcccc-----cCC-CCCCCCCcEEecccCcCCC----cCCh------hhhcCCCcCceecccCCc
Q 040192           49 VRKWEKNVRRLSLMENQIEN-----LSE-VPTCPYLRTLFLNNNAPLR----RIDS------GFFQSMPRLNVLNLSGAI  112 (386)
Q Consensus        49 ~~~~~~~L~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~~~~----~~~~------~~~~~l~~L~~L~l~~~~  112 (386)
                      ..... .++.+++++|.+..     +.. ...-+.|+..+++.. ..+    .+|.      ..+..+++|++++|+.| 
T Consensus        26 ~~~~~-s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-  102 (382)
T KOG1909|consen   26 LEPMD-SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-  102 (382)
T ss_pred             hcccC-ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-
Confidence            34445 67778888877664     111 145557777776654 222    1221      11344566666666666 


Q ss_pred             ccc-ccc----hhhcCCCccCEEEcCCCCCCcc--------------cHhhhccCCCCEEEccCCccccccch----hhh
Q 040192          113 RLY-SFP----LGISKLISLQHLDLSNTGIAEL--------------PKELNALVNLTCLNLEETWRLTVIPR----RLI  169 (386)
Q Consensus       113 ~~~-~~~----~~~~~l~~L~~L~l~~~~i~~l--------------~~~~~~l~~L~~L~l~~~~~~~~~~~----~~l  169 (386)
                      -++ ..+    .-+..+..|++|.+.+|.+...              ...++.-++|+.+....| .+.+.+.    .++
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~  181 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAF  181 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHH
Confidence            444 112    2234456666666666655311              112234455666666555 3333221    124


Q ss_pred             cCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCcccc
Q 040192          170 SSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSF  249 (386)
Q Consensus       170 ~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  249 (386)
                      ...+.|+.++++.|.+...+..                 .....+..+++|+.|++.+|.....-......  .-+    
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~-----------------al~eal~~~~~LevLdl~DNtft~egs~~Lak--aL~----  238 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVT-----------------ALAEALEHCPHLEVLDLRDNTFTLEGSVALAK--ALS----  238 (382)
T ss_pred             HhccccceEEEecccccCchhH-----------------HHHHHHHhCCcceeeecccchhhhHHHHHHHH--Hhc----
Confidence            4556666666666555443110                 01345667788888888887655432111110  111    


Q ss_pred             ccCcccEEEecCCCCCCccc-------cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccc
Q 040192          250 VFHSLKKFQISYCKELKDLT-------FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYL  317 (386)
Q Consensus       250 ~~~~L~~L~l~~~~~l~~~~-------~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  317 (386)
                      ..++|+.|+++.| .+++-.       .....|.|++|.+.+|. ++.-......   ......|.|+.|+|++|
T Consensus       239 s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la---~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  239 SWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALA---ACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             ccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHH---HHHhcchhhHHhcCCcc
Confidence            5677888888888 455421       12347888888888855 4432221100   13334678888888887

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=2.9e-08  Score=85.45  Aligned_cols=212  Identities=19%  Similarity=0.154  Sum_probs=125.9

Q ss_pred             CcEEecccCcCCCcCCh--hhhcCCCcCceecccCCcccccc---chhhcCCCccCEEEcCCCCCCcccHhh-hccCCCC
Q 040192           78 LRTLFLNNNAPLRRIDS--GFFQSMPRLNVLNLSGAIRLYSF---PLGISKLISLQHLDLSNTGIAELPKEL-NALVNLT  151 (386)
Q Consensus        78 L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~l~~~~-~~l~~L~  151 (386)
                      +..+-+.++ .+.....  .+...+..++.+++.+| .++..   ...+.++|+|++|+++.|.+....... ....+|+
T Consensus        47 ~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   47 LELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             hhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            334455555 5544432  22346788889999888 77754   334578899999999998776433222 3567888


Q ss_pred             EEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCc
Q 040192          152 CLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGL  231 (386)
Q Consensus       152 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  231 (386)
                      .|-+.+...-..-..+.+..++.+++|+++.|.....-                +++...+.+  -+-++++....|...
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n----------------~Dd~c~e~~--s~~v~tlh~~~c~~~  186 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLN----------------LDDNCIEDW--STEVLTLHQLPCLEQ  186 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhc----------------ccccccccc--chhhhhhhcCCcHHH
Confidence            88888875433322334677888888888887443320                000000111  123455555555333


Q ss_pred             cchhcccccccccCccccccCcccEEEecCCCCCCccc---cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccc
Q 040192          232 AELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT---FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQ  308 (386)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~  308 (386)
                      .........+        .+|++..+-+..|+ +++..   ....+|.+-.|.|.. +++.++..-      ..+.+||.
T Consensus       187 ~w~~~~~l~r--------~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasv------D~Ln~f~~  250 (418)
T KOG2982|consen  187 LWLNKNKLSR--------IFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASV------DALNGFPQ  250 (418)
T ss_pred             HHHHHHhHHh--------hcccchheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHH------HHHcCCch
Confidence            2222222222        57888888888885 44433   234567777777776 457766543      36777888


Q ss_pred             cceeeeccccccccccC
Q 040192          309 FHFLCFSYLPNLKSIYR  325 (386)
Q Consensus       309 L~~L~l~~~~~l~~~~~  325 (386)
                      |..|.+++.|-++.+..
T Consensus       251 l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  251 LVDLRVSENPLSDPLRG  267 (418)
T ss_pred             hheeeccCCcccccccC
Confidence            88888888876665543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.55  E-value=7.2e-08  Score=64.73  Aligned_cols=58  Identities=41%  Similarity=0.553  Sum_probs=32.7

Q ss_pred             CCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc-hhhcCCCccCEEEcCCCC
Q 040192           77 YLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLSNTG  136 (386)
Q Consensus        77 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~  136 (386)
                      +|++|++++| .+..++...|.++++|++|++++| .+..++ ..|..+++|++|++++|.
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4555555555 555555555556666666666655 555543 345555666666655554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.41  E-value=3.2e-07  Score=61.56  Aligned_cols=58  Identities=34%  Similarity=0.556  Sum_probs=30.1

Q ss_pred             ccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccC
Q 040192          126 SLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSG  184 (386)
Q Consensus       126 ~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  184 (386)
                      +|+.|++++|.++.+|. .+..+++|+.|++++| .+..++..++..+++|+.|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555555542 3445555555555555 3344444445555555555555553

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.38  E-value=4.5e-08  Score=86.03  Aligned_cols=227  Identities=15%  Similarity=0.148  Sum_probs=150.3

Q ss_pred             ccEEEEcCCCCCCC------CcccccccCccEEEecCCccc----ccCC--------CCCCCCCcEEecccCcCCCcCC-
Q 040192           33 EEHLVYAGAGLSET------PDVRKWEKNVRRLSLMENQIE----NLSE--------VPTCPYLRTLFLNNNAPLRRID-   93 (386)
Q Consensus        33 ~~~l~~~~~~l~~~------p~~~~~~~~L~~L~l~~~~~~----~~~~--------~~~~~~L~~L~l~~~~~~~~~~-   93 (386)
                      ..-+.++|+.+..=      +.+++.+ +|+..+++...-.    .+|.        ...+++|++|+++.|......+ 
T Consensus        32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~-~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~  110 (382)
T KOG1909|consen   32 LTKLDLSGNTFGTEAARAIAKVLASKK-ELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR  110 (382)
T ss_pred             eEEEeccCCchhHHHHHHHHHHHhhcc-cceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence            45566777766421      3466666 7888888754211    1222        2678899999999994333333 


Q ss_pred             --hhhhcCCCcCceecccCCccccccc--------------hhhcCCCccCEEEcCCCCCCccc-----HhhhccCCCCE
Q 040192           94 --SGFFQSMPRLNVLNLSGAIRLYSFP--------------LGISKLISLQHLDLSNTGIAELP-----KELNALVNLTC  152 (386)
Q Consensus        94 --~~~~~~l~~L~~L~l~~~~~~~~~~--------------~~~~~l~~L~~L~l~~~~i~~l~-----~~~~~l~~L~~  152 (386)
                        ..++..+..|+.|.+.+| .++...              .....-+.|+++..++|++..-+     ..+...+.|+.
T Consensus       111 ~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee  189 (382)
T KOG1909|consen  111 GLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE  189 (382)
T ss_pred             HHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence              234677999999999988 766321              11234478999999999886443     45667789999


Q ss_pred             EEccCCccccc---cchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccC
Q 040192          153 LNLEETWRLTV---IPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECY  229 (386)
Q Consensus       153 L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  229 (386)
                      +.++.|.+-..   +-...+.++++|++|++++|.++..++...                 ...+..+++|+.|++++|.
T Consensus       190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L-----------------akaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL-----------------AKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH-----------------HHHhcccchheeecccccc
Confidence            99998843211   112237899999999999998887632221                 2345567889999999985


Q ss_pred             Cccch---hcccccccccCccccccCcccEEEecCCCCCCc-c-----ccccCCCCCcEEeecCCCc
Q 040192          230 GLAEL---KMDYKSVVQNTGQSFVFHSLKKFQISYCKELKD-L-----TFLIFAPNLKSIEVDSCYA  287 (386)
Q Consensus       230 ~~~~~---~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~-----~~l~~l~~L~~L~l~~c~~  287 (386)
                      .-+.-   ....+..        ..|+|+.|.+.+|. ++. -     ..+...|.|+.|+|.+|..
T Consensus       253 l~~~Ga~a~~~al~~--------~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  253 LENEGAIAFVDALKE--------SAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccHHHHHHHHhc--------cCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            54321   1122222        67899999999994 443 1     2244578999999999663

>PLN03150 hypothetical protein; Provisional

Probab=98.35  E-value=1.9e-06  Score=85.79  Aligned_cols=103  Identities=23%  Similarity=0.341  Sum_probs=54.8

Q ss_pred             CcEEecccCcCCCcCChhhhcCCCcCceecccCCcccc-ccchhhcCCCccCEEEcCCCCCC-cccHhhhccCCCCEEEc
Q 040192           78 LRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLY-SFPLGISKLISLQHLDLSNTGIA-ELPKELNALVNLTCLNL  155 (386)
Q Consensus        78 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l  155 (386)
                      ++.|++++|...+.+|.. +..+++|+.|++++| .+. .+|..++.+++|+.|++++|.++ .+|..++.+++|+.|++
T Consensus       420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            445555555222334443 455666666666665 443 44555556666666666666555 45555556666666666


Q ss_pred             cCCccccccchhhhcC-CCCCcEEEEecc
Q 040192          156 EETWRLTVIPRRLISS-FSSLHVLRIFGS  183 (386)
Q Consensus       156 ~~~~~~~~~~~~~l~~-l~~L~~L~l~~~  183 (386)
                      ++|.....+|.. ++. ..++..+++.+|
T Consensus       498 s~N~l~g~iP~~-l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        498 NGNSLSGRVPAA-LGGRLLHRASFNFTDN  525 (623)
T ss_pred             cCCcccccCChH-HhhccccCceEEecCC
Confidence            666554555554 322 234445555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=3.1e-07  Score=79.23  Aligned_cols=206  Identities=23%  Similarity=0.230  Sum_probs=136.2

Q ss_pred             cCCCccCEEEcCCCCCC---cccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccc
Q 040192          122 SKLISLQHLDLSNTGIA---ELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFE  198 (386)
Q Consensus       122 ~~l~~L~~L~l~~~~i~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~  198 (386)
                      ..+++++.+|+..|.++   ++-..+.+++.|++|+++.|.....+... -....+|+.|-+.++.+.....-.      
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~nl~~lVLNgT~L~w~~~~s------  140 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLKNLRVLVLNGTGLSWTQSTS------  140 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-cccccceEEEEEcCCCCChhhhhh------
Confidence            46789999999999887   45566778999999999999654444431 134568999999998777662222      


Q ss_pred             cccceeecCCccccccccccCCcEEEeeccCCccc-hhcccccccccCccccccCcccEEEecCCCCCCccc---cccCC
Q 040192          199 QLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAE-LKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT---FLIFA  274 (386)
Q Consensus       199 ~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~l~~l  274 (386)
                                    .+..+|+++.|.++.|....- ........        .-+.+.+|+...|.-.....   ....|
T Consensus       141 --------------~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~--------~s~~v~tlh~~~c~~~~w~~~~~l~r~F  198 (418)
T KOG2982|consen  141 --------------SLDDLPKVTELHMSDNSLRQLNLDDNCIED--------WSTEVLTLHQLPCLEQLWLNKNKLSRIF  198 (418)
T ss_pred             --------------hhhcchhhhhhhhccchhhhhccccccccc--------cchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence                          233456666666665521100 00111110        34678888888885322211   12458


Q ss_pred             CCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccC--CCcCCCCccEEeecCcccCcCCCCCcc
Q 040192          275 PNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYR--KPLPFPHLKEMKVIHCLKLKKLPLDSN  352 (386)
Q Consensus       275 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~i~~c~~L~~l~~~~~  352 (386)
                      |++..+.+..|+ +++...+      .....+|.+--|+++.. ++.+|..  +...|+.|.-|.+.+.|-+..+.-+..
T Consensus       199 pnv~sv~v~e~P-lK~~s~e------k~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~er  270 (418)
T KOG2982|consen  199 PNVNSVFVCEGP-LKTESSE------KGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGER  270 (418)
T ss_pred             ccchheeeecCc-ccchhhc------ccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcc
Confidence            999999999988 6665554      36677888889999887 6666543  567799999999999888877765543


Q ss_pred             ccc-----CcceEEEch
Q 040192          353 RAK-----ERKIVIRGS  364 (386)
Q Consensus       353 ~~~-----~~l~i~~~~  364 (386)
                      ...     .++++....
T Consensus       271 r~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  271 RFLLIARLTKVQVLNGS  287 (418)
T ss_pred             eEEEEeeccceEEecCc
Confidence            322     555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.28  E-value=1.5e-07  Score=89.27  Aligned_cols=130  Identities=28%  Similarity=0.423  Sum_probs=86.4

Q ss_pred             CccEEEecCCccccc-CCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcC
Q 040192           55 NVRRLSLMENQIENL-SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLS  133 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  133 (386)
                      .+..+.+..|.+..+ .....+.+|+.|++..| .+..+... +..+++|++|++++| .++.+. .+..++.|+.|+++
T Consensus        73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhheec
Confidence            566666777766663 33477777888888777 66655543 456778888888877 777653 35566668888888


Q ss_pred             CCCCCcccHhhhccCCCCEEEccCCccccccch-hhhcCCCCCcEEEEeccCCccccCC
Q 040192          134 NTGIAELPKELNALVNLTCLNLEETWRLTVIPR-RLISSFSSLHVLRIFGSGYSYSDGM  191 (386)
Q Consensus       134 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~  191 (386)
                      +|.++.+. .+..+++|+.+++++| .+..+.. . ...+.+++.+++.++.+......
T Consensus       149 ~N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~  204 (414)
T KOG0531|consen  149 GNLISDIS-GLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIREIEGL  204 (414)
T ss_pred             cCcchhcc-CCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhcccch
Confidence            88777664 3445777788888877 4444444 2 36677777778877776665333

>PLN03150 hypothetical protein; Provisional

Probab=98.26  E-value=3.6e-06  Score=83.79  Aligned_cols=109  Identities=23%  Similarity=0.348  Sum_probs=88.6

Q ss_pred             CccEEEecCCcccc-cCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccc-ccchhhcCCCccCEEE
Q 040192           55 NVRRLSLMENQIEN-LSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLY-SFPLGISKLISLQHLD  131 (386)
Q Consensus        55 ~L~~L~l~~~~~~~-~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~  131 (386)
                      .++.|+++++.+.+ +|.. ..+++|+.|++++|...+.+|.. ++.+++|+.|++++| .+. .+|..++++++|+.|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEE
Confidence            37889999999987 5555 88999999999999433467766 799999999999999 665 6788999999999999


Q ss_pred             cCCCCCC-cccHhhhcc-CCCCEEEccCCccccccc
Q 040192          132 LSNTGIA-ELPKELNAL-VNLTCLNLEETWRLTVIP  165 (386)
Q Consensus       132 l~~~~i~-~l~~~~~~l-~~L~~L~l~~~~~~~~~~  165 (386)
                      +++|.++ .+|..++.. .++..+++.+|..+...|
T Consensus       497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            9999987 788777653 467788888885544433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.24  E-value=1.7e-07  Score=88.94  Aligned_cols=193  Identities=21%  Similarity=0.210  Sum_probs=98.4

Q ss_pred             CCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEE
Q 040192           75 CPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLN  154 (386)
Q Consensus        75 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~  154 (386)
                      +..+..+.+..+ .+..+... ...+..|+.+++.++ .+..+...+..+++|++|++++|.|+.+. .+..++.|+.|+
T Consensus        71 l~~l~~l~l~~n-~i~~~~~~-l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQN-LIAKILNH-LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchh-hhhhhhcc-cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhhe
Confidence            344444444444 33331111 345555555555555 55544333445555555555555555442 234444455555


Q ss_pred             ccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccch
Q 040192          155 LEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAEL  234 (386)
Q Consensus       155 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  234 (386)
                      +.+| .+..+..  +..+.+|+.+++.+|.+......                    . +..+.+++.+.+.++....  
T Consensus       147 l~~N-~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~--------------------~-~~~~~~l~~l~l~~n~i~~--  200 (414)
T KOG0531|consen  147 LSGN-LISDISG--LESLKSLKLLDLSYNRIVDIEND--------------------E-LSELISLEELDLGGNSIRE--  200 (414)
T ss_pred             eccC-cchhccC--CccchhhhcccCCcchhhhhhhh--------------------h-hhhccchHHHhccCCchhc--
Confidence            5555 3444443  44455555555555544443100                    1 3445677777777775543  


Q ss_pred             hcccccccccCccccccCcccEEEecCCCCCCccccccCCCC--CcEEeecCCCccchhhccCcccccCCCCccccccee
Q 040192          235 KMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPN--LKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFL  312 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~--L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L  312 (386)
                       ..+..         ....+..+++..+ .++.+..+..++.  |+.+++.+.. +.....        .+..+..++.|
T Consensus       201 -i~~~~---------~~~~l~~~~l~~n-~i~~~~~l~~~~~~~L~~l~l~~n~-i~~~~~--------~~~~~~~l~~l  260 (414)
T KOG0531|consen  201 -IEGLD---------LLKKLVLLSLLDN-KISKLEGLNELVMLHLRELYLSGNR-ISRSPE--------GLENLKNLPVL  260 (414)
T ss_pred             -ccchH---------HHHHHHHhhcccc-cceeccCcccchhHHHHHHhcccCc-cccccc--------ccccccccccc
Confidence             22222         3444545556655 3444444444444  7788888744 554421        44566777777


Q ss_pred             eeccc
Q 040192          313 CFSYL  317 (386)
Q Consensus       313 ~l~~~  317 (386)
                      ++.+.
T Consensus       261 ~~~~n  265 (414)
T KOG0531|consen  261 DLSSN  265 (414)
T ss_pred             chhhc
Confidence            77765

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.07  E-value=6.7e-07  Score=68.38  Aligned_cols=109  Identities=19%  Similarity=0.307  Sum_probs=86.6

Q ss_pred             CccEEEecCCcccccCCC----CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEE
Q 040192           55 NVRRLSLMENQIENLSEV----PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHL  130 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  130 (386)
                      .+..+++++|++..++..    .+..+|+..++++| .++++|+.+-..++-++.+++++| .+.++|..+..++.|+.|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence            456677777776654333    67778888889988 888888886667788899999988 888998888899999999


Q ss_pred             EcCCCCCCcccHhhhccCCCCEEEccCCccccccch
Q 040192          131 DLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPR  166 (386)
Q Consensus       131 ~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~  166 (386)
                      ++++|.+...|..+..+.++..|+..++ -...++.
T Consensus       106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~  140 (177)
T KOG4579|consen  106 NLRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDV  140 (177)
T ss_pred             ccccCccccchHHHHHHHhHHHhcCCCC-ccccCcH
Confidence            9999999988888888888888888877 3445554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.02  E-value=1.2e-07  Score=90.96  Aligned_cols=89  Identities=21%  Similarity=0.293  Sum_probs=57.9

Q ss_pred             cCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEe
Q 040192          102 RLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIF  181 (386)
Q Consensus       102 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  181 (386)
                      .|.+.+.+.| .+..+-..+.-++.++.|++++|+++.+. .+..|+.|++|++++| .++.+|.-.... +.|..|.++
T Consensus       165 ~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~g-c~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVG-CKLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhh-hhheeeeec
Confidence            4455555555 55544445566678888888888887664 6777888888888888 556666521223 348888888


Q ss_pred             ccCCccccCCCcC
Q 040192          182 GSGYSYSDGMIGN  194 (386)
Q Consensus       182 ~~~~~~~~~~~~l  194 (386)
                      +|.++...++..+
T Consensus       241 nN~l~tL~gie~L  253 (1096)
T KOG1859|consen  241 NNALTTLRGIENL  253 (1096)
T ss_pred             ccHHHhhhhHHhh
Confidence            8877665333333

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.97  E-value=1.5e-06  Score=84.31  Aligned_cols=115  Identities=26%  Similarity=0.297  Sum_probs=74.8

Q ss_pred             CCCCCCcEEecccCcCCCcCC-hhhhcCCCcCceecccCC-cccccc----chhhcCCCccCEEEcCCCC-CCc--ccHh
Q 040192           73 PTCPYLRTLFLNNNAPLRRID-SGFFQSMPRLNVLNLSGA-IRLYSF----PLGISKLISLQHLDLSNTG-IAE--LPKE  143 (386)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~-i~~--l~~~  143 (386)
                      ..+++|+.+.+.++..+.+.. ..+...+++|+.|++.++ ......    ......+.+|+.|+++.+. ++.  +...
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            457888888888876555533 233668899999998762 122211    1223456888899998887 552  2222


Q ss_pred             hhccCCCCEEEccCCccccccc-hhhhcCCCCCcEEEEeccCCcc
Q 040192          144 LNALVNLTCLNLEETWRLTVIP-RRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       144 ~~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      ...|++|+.|.+..|..+++.. ..+...+++|++|+++++....
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~  309 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT  309 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence            2348899999988885443322 2335678889999999876653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.97  E-value=1.2e-06  Score=84.99  Aligned_cols=137  Identities=23%  Similarity=0.225  Sum_probs=73.2

Q ss_pred             cCCCcCceecccCCccccc--cchhhcCCCccCEEEcCCC--CCCcc----cHhhhccCCCCEEEccCCccccccchhhh
Q 040192           98 QSMPRLNVLNLSGAIRLYS--FPLGISKLISLQHLDLSNT--GIAEL----PKELNALVNLTCLNLEETWRLTVIPRRLI  169 (386)
Q Consensus        98 ~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~--~i~~l----~~~~~~l~~L~~L~l~~~~~~~~~~~~~l  169 (386)
                      ..++.|+.+.+.++..+..  +-.....+++|+.|+++++  .+...    ......+.+|+.++++.+..+.+..-..+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            3467777777766644443  2234456677777777652  11111    12334556777777777654444332223


Q ss_pred             c-CCCCCcEEEEeccC-CccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCcc
Q 040192          170 S-SFSSLHVLRIFGSG-YSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQ  247 (386)
Q Consensus       170 ~-~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  247 (386)
                      . .+++|+.|.+..+. +++. +                   .......+++|++|++++|..+.+........      
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~-g-------------------l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~------  318 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDE-G-------------------LVSIAERCPSLRELDLSGCHGLTDSGLEALLK------  318 (482)
T ss_pred             HhhCCCcceEccCCCCccchh-H-------------------HHHHHHhcCcccEEeeecCccchHHHHHHHHH------
Confidence            2 36677777766554 2322 0                   11223346778888888887765433333222      


Q ss_pred             ccccCcccEEEecCC
Q 040192          248 SFVFHSLKKFQISYC  262 (386)
Q Consensus       248 ~~~~~~L~~L~l~~~  262 (386)
                        .+++|+.|.+..+
T Consensus       319 --~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  319 --NCPNLRELKLLSL  331 (482)
T ss_pred             --hCcchhhhhhhhc
Confidence              5666666554443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.96  E-value=7.2e-05  Score=69.11  Aligned_cols=32  Identities=22%  Similarity=0.275  Sum_probs=17.0

Q ss_pred             cCcccEEEecCCCCCCccccccCCCCCcEEeecC
Q 040192          251 FHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDS  284 (386)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~  284 (386)
                      +++|+.|.+++|..+..++.  -..+|+.|+++.
T Consensus       155 PsSLk~L~Is~c~~i~LP~~--LP~SLk~L~ls~  186 (426)
T PRK15386        155 SPSLKTLSLTGCSNIILPEK--LPESLQSITLHI  186 (426)
T ss_pred             CCcccEEEecCCCcccCccc--ccccCcEEEecc
Confidence            45677777776653321111  124666666655

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.94  E-value=6.8e-05  Score=69.27  Aligned_cols=13  Identities=23%  Similarity=0.526  Sum_probs=7.3

Q ss_pred             cCCcEEEeeccCC
Q 040192          218 KRLNRLKIAECYG  230 (386)
Q Consensus       218 ~~L~~L~l~~~~~  230 (386)
                      ++|+.|.+++|..
T Consensus       156 sSLk~L~Is~c~~  168 (426)
T PRK15386        156 PSLKTLSLTGCSN  168 (426)
T ss_pred             CcccEEEecCCCc
Confidence            4566666665543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.92  E-value=1.9e-05  Score=64.64  Aligned_cols=101  Identities=26%  Similarity=0.403  Sum_probs=61.4

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc--hhhcCCCccCEEEc
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP--LGISKLISLQHLDL  132 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l  132 (386)
                      +...+++++|++..++.+..++.|.+|.+.+| .+..+.+.+...+++|..|.+.+| .+.++.  ..+..|+.|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCC-cceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeee
Confidence            45566777777776666677777777777777 666666665555666777777766 555441  23455666666666


Q ss_pred             CCCCCCcccH----hhhccCCCCEEEccC
Q 040192          133 SNTGIAELPK----ELNALVNLTCLNLEE  157 (386)
Q Consensus       133 ~~~~i~~l~~----~~~~l~~L~~L~l~~  157 (386)
                      -+|.++.-..    .+..+++|+.|++..
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            6666553321    234455555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.90  E-value=2.1e-07  Score=89.28  Aligned_cols=125  Identities=27%  Similarity=0.308  Sum_probs=77.2

Q ss_pred             CccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcC
Q 040192           55 NVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLS  133 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  133 (386)
                      .|...++++|.+..++.. .-++.|+.|++++| .+.+..  .+..|++|++||++.| .+..+|..--.-.+|+.|.++
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH--HHHhcccccccccccc-hhccccccchhhhhheeeeec
Confidence            455556666666655544 66777777777777 444443  2667777777777777 666665322111237777777


Q ss_pred             CCCCCcccHhhhccCCCCEEEccCCcccccc-chhhhcCCCCCcEEEEeccCC
Q 040192          134 NTGIAELPKELNALVNLTCLNLEETWRLTVI-PRRLISSFSSLHVLRIFGSGY  185 (386)
Q Consensus       134 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~  185 (386)
                      +|.++.+ ..+.++.+|+.|++++| .+... .-..++.+..|+.|++.||++
T Consensus       241 nN~l~tL-~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALTTL-RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHHHhh-hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            7777666 35667777777777777 33222 122256667777777777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.89  E-value=2.4e-05  Score=48.18  Aligned_cols=33  Identities=52%  Similarity=0.752  Sum_probs=17.4

Q ss_pred             ccCEEEcCCCCCCcccHhhhccCCCCEEEccCC
Q 040192          126 SLQHLDLSNTGIAELPKELNALVNLTCLNLEET  158 (386)
Q Consensus       126 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~  158 (386)
                      +|++|++++|.++.+|..++.+++|+.|++++|
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence            455555555555555554555555555555555

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=1.6e-05  Score=49.02  Aligned_cols=40  Identities=33%  Similarity=0.536  Sum_probs=26.9

Q ss_pred             CcCceecccCCccccccchhhcCCCccCEEEcCCCCCCccc
Q 040192          101 PRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELP  141 (386)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~  141 (386)
                      ++|++|++++| .+..+|+.++++++|++|++++|.++.++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            35677777777 77777666777777777777777776654

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.81  E-value=1.1e-05  Score=80.36  Aligned_cols=131  Identities=22%  Similarity=0.267  Sum_probs=60.8

Q ss_pred             CccEEEecCCccc-c-cCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEE
Q 040192           55 NVRRLSLMENQIE-N-LSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHL  130 (386)
Q Consensus        55 ~L~~L~l~~~~~~-~-~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  130 (386)
                      +|++|+++|...- . ++..  ..+|.|++|.+.+-....+--......+++|..||++++ .++.+ .+++.+++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHH
Confidence            4555555554211 1 2222  445666666655542111111122445566666666665 55554 455556666666


Q ss_pred             EcCCCCCCccc--HhhhccCCCCEEEccCCcccccc--ch---hhhcCCCCCcEEEEeccCCcc
Q 040192          131 DLSNTGIAELP--KELNALVNLTCLNLEETWRLTVI--PR---RLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       131 ~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~--~~---~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      .+.+-.+..-.  ..+..+++|+.||+|..+....-  ..   +.-..+|+|+.|+.+++.+..
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            55554443221  23445666666666554322111  00   011335566666666554443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.73  E-value=1.9e-05  Score=78.81  Aligned_cols=106  Identities=27%  Similarity=0.303  Sum_probs=64.0

Q ss_pred             CccCEEEcCCCCCC--cccHhhh-ccCCCCEEEccCCccc-cccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccc
Q 040192          125 ISLQHLDLSNTGIA--ELPKELN-ALVNLTCLNLEETWRL-TVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQL  200 (386)
Q Consensus       125 ~~L~~L~l~~~~i~--~l~~~~~-~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L  200 (386)
                      .+|++|++++...-  .=|..++ .+|+|+.|.+++-... +++.. ...++++|..||+++++++...+++.+++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGTNISNLSGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH-HhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence            56777777664321  1122333 4677787777764332 22333 356778888888888877777777777777777


Q ss_pred             c-ceeecCC-ccccccccccCCcEEEeeccCCc
Q 040192          201 C-GFRRSKS-LDVSALADLKRLNRLKIAECYGL  231 (386)
Q Consensus       201 ~-~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~  231 (386)
                      . ..+.... .....+..+++|+.|+++..+..
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence            6 3333322 33455666777888888765443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.49  E-value=0.00018  Score=59.08  Aligned_cols=129  Identities=24%  Similarity=0.271  Sum_probs=90.3

Q ss_pred             CccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhh-cCCCccCEEEc
Q 040192           55 NVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGI-SKLISLQHLDL  132 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l  132 (386)
                      +=+++++.+.++..+... .-......++++.| .+..++.  +.+++.|.+|.+..| ++..+.+.+ ..+++|+.|.+
T Consensus        20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdN-dl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~L   95 (233)
T KOG1644|consen   20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDN-DLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLIL   95 (233)
T ss_pred             cccccccccccccchhhccccccccceeccccc-chhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEe
Confidence            345666777766665444 44557777888888 6666655  778999999999888 888875445 45678999999


Q ss_pred             CCCCCCccc--HhhhccCCCCEEEccCCccccc--cchhhhcCCCCCcEEEEeccCCcc
Q 040192          133 SNTGIAELP--KELNALVNLTCLNLEETWRLTV--IPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       133 ~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      .+|.+.++-  ..+..|++|+.|.+-+|+....  .-..++..+++|+.|++.+-...+
T Consensus        96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~E  154 (233)
T KOG1644|consen   96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKE  154 (233)
T ss_pred             cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHH
Confidence            999887553  3466788999998877743221  122346788899999988754333

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.47  E-value=1.2e-05  Score=61.74  Aligned_cols=108  Identities=27%  Similarity=0.317  Sum_probs=88.5

Q ss_pred             cccEEEEcCCCCCCCCc----ccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCce
Q 040192           32 KEEHLVYAGAGLSETPD----VRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNV  105 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~----~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  105 (386)
                      +..+++++...+..+++    +.+.. .++..++++|.+.++|..  .+++-+++|.+.+| .++++|.+ +..++.|+.
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~-el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGY-ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRS  104 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCc-eEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhh
Confidence            44556666666655543    33334 677789999999998877  78889999999999 99999999 789999999


Q ss_pred             ecccCCccccccchhhcCCCccCEEEcCCCCCCcccHh
Q 040192          106 LNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE  143 (386)
Q Consensus       106 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~  143 (386)
                      |+++.| .+...|..+..+.++-+|+..++....+|..
T Consensus       105 lNl~~N-~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  105 LNLRFN-PLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cccccC-ccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            999999 8888888888899999999999988888755

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.00  E-value=0.00049  Score=59.18  Aligned_cols=82  Identities=23%  Similarity=0.283  Sum_probs=40.6

Q ss_pred             CCCCcEEecccCcCCCc-CC---hhhhcCCCcCceecccCCccccc-----------cchhhcCCCccCEEEcCCCCCC-
Q 040192           75 CPYLRTLFLNNNAPLRR-ID---SGFFQSMPRLNVLNLSGAIRLYS-----------FPLGISKLISLQHLDLSNTGIA-  138 (386)
Q Consensus        75 ~~~L~~L~l~~~~~~~~-~~---~~~~~~l~~L~~L~l~~~~~~~~-----------~~~~~~~l~~L~~L~l~~~~i~-  138 (386)
                      ...+..+++++| .++. ..   ...+..-.+|++.+++.- ..+.           +.+++-+|++|+..++|.|.+. 
T Consensus        29 ~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          29 MDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            556667777777 4442 11   122344556666665543 2221           1223445566666666666554 


Q ss_pred             cccH----hhhccCCCCEEEccCC
Q 040192          139 ELPK----ELNALVNLTCLNLEET  158 (386)
Q Consensus       139 ~l~~----~~~~l~~L~~L~l~~~  158 (386)
                      ..|+    .+.+-+.|.+|.+++|
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~Nn  130 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNN  130 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecC
Confidence            3332    2344455555555555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.98  E-value=0.00012  Score=62.42  Aligned_cols=90  Identities=19%  Similarity=0.220  Sum_probs=47.8

Q ss_pred             cccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc---ccccCCCCCcEEeecCCCccch
Q 040192          214 LADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL---TFLIFAPNLKSIEVDSCYALEE  290 (386)
Q Consensus       214 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~l~~l~~L~~L~l~~c~~~~~  290 (386)
                      +..+++|+.|.++.|.......+.....        .+|+|++|++++| +++++   ..+..+++|..|++.+|.... 
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e--------~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~~~~-  130 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAE--------KAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCSVTN-  130 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhh--------hCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCCccc-
Confidence            3445667777777662222122222221        4577777777777 34443   334556677777777766333 


Q ss_pred             hhccCcccccCCCCcccccceeeeccc
Q 040192          291 IVSDVPEVMMGNLNPFAQFHFLCFSYL  317 (386)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~L~~L~l~~~  317 (386)
                      ...  +..  ..+.-+|+|++|+-.+.
T Consensus       131 l~d--yre--~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  131 LDD--YRE--KVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             ccc--HHH--HHHHHhhhhcccccccc
Confidence            111  000  24455667777665554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.98  E-value=0.00023  Score=61.18  Aligned_cols=114  Identities=18%  Similarity=0.141  Sum_probs=64.7

Q ss_pred             CCCCCCcEEecccCcCCCcCCh---hhhcCCCcCceecccCCccccccch-----h---------hcCCCccCEEEcCCC
Q 040192           73 PTCPYLRTLFLNNNAPLRRIDS---GFFQSMPRLNVLNLSGAIRLYSFPL-----G---------ISKLISLQHLDLSNT  135 (386)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~-----~---------~~~l~~L~~L~l~~~  135 (386)
                      .+||+|+..+++.|......++   .+++.-..|..|.+++| .++.+..     +         ..+-|.|+......|
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            6777777777777743334443   23556677777777777 5553311     1         123366777777777


Q ss_pred             CCCcccH-----hhhccCCCCEEEccCCcccccc-----chhhhcCCCCCcEEEEeccCCccc
Q 040192          136 GIAELPK-----ELNALVNLTCLNLEETWRLTVI-----PRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       136 ~i~~l~~-----~~~~l~~L~~L~l~~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      ++...+.     .+..-.+|..+.+..|. ++.-     ...-+..+.+|+.|++++|.++-.
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~  229 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE  229 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence            7654442     12223467777776662 2211     111134567777777777766544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=7.9e-05  Score=64.09  Aligned_cols=96  Identities=28%  Similarity=0.315  Sum_probs=51.3

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc--hhhcCCCccCEEEc
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP--LGISKLISLQHLDL  132 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l  132 (386)
                      +++.|+.-||.+.++.-..+++.|+.|.++-| .++.+.+  +.+|++|++|+|..| .+..+-  .-+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvN-kIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVN-KISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHHHHHhcccceeEEeecc-ccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence            45555555665555544455666666666665 5554444  456666666666655 555442  23355666666666


Q ss_pred             CCCCCC-ccc-----HhhhccCCCCEEE
Q 040192          133 SNTGIA-ELP-----KELNALVNLTCLN  154 (386)
Q Consensus       133 ~~~~i~-~l~-----~~~~~l~~L~~L~  154 (386)
                      ..|.-. .-+     ..+.-+++|+.|+
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            555432 111     2344555565554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.89  E-value=0.00066  Score=58.09  Aligned_cols=82  Identities=28%  Similarity=0.425  Sum_probs=39.4

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCc--CCCcCChhhhcCCCcCceecccCCcccccc--chhhcCCCccCEE
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNA--PLRRIDSGFFQSMPRLNVLNLSGAIRLYSF--PLGISKLISLQHL  130 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L  130 (386)
                      .++.+++.+..++.+.....+++|+.|.++.|+  ....+..- ...+++|+++++++| ++..+  ......+.+|..|
T Consensus        44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-ccccccccchhhhhcchhhh
Confidence            555666666666555555556666666666552  11122222 233455555555555 44432  1123344444455


Q ss_pred             EcCCCCCC
Q 040192          131 DLSNTGIA  138 (386)
Q Consensus       131 ~l~~~~i~  138 (386)
                      ++.+|..+
T Consensus       122 dl~n~~~~  129 (260)
T KOG2739|consen  122 DLFNCSVT  129 (260)
T ss_pred             hcccCCcc
Confidence            55444433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=9.5e-05  Score=63.62  Aligned_cols=100  Identities=24%  Similarity=0.262  Sum_probs=56.6

Q ss_pred             CCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCccc--HhhhccCCCCE
Q 040192           75 CPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELP--KELNALVNLTC  152 (386)
Q Consensus        75 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~  152 (386)
                      +.+.+.|++.+| .+.++.-  ..+|+.|++|.|+-| .++.+. .+..|++|+.|.+..|.|.++.  ..+.++++|+.
T Consensus        18 l~~vkKLNcwg~-~L~DIsi--c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDISI--CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCC-CccHHHH--HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            445556666666 5555533  556777777777666 565542 2456666666666666666543  23456666666


Q ss_pred             EEccCCccccccch----hhhcCCCCCcEEE
Q 040192          153 LNLEETWRLTVIPR----RLISSFSSLHVLR  179 (386)
Q Consensus       153 L~l~~~~~~~~~~~----~~l~~l~~L~~L~  179 (386)
                      |.|..|+-....+.    .++..+++|++|+
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            66655544333322    2345556666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.69  E-value=0.00022  Score=58.59  Aligned_cols=65  Identities=22%  Similarity=0.361  Sum_probs=34.7

Q ss_pred             ccCcccEEEecCCCCCCcc--cccc-CCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccc
Q 040192          250 VFHSLKKFQISYCKELKDL--TFLI-FAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLK  321 (386)
Q Consensus       250 ~~~~L~~L~l~~~~~l~~~--~~l~-~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  321 (386)
                      .++.++.|.+.+|....+.  ..++ ..++|+.|+|++|+.|++-..       ..+..+++|+.|.|.+.+.+.
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-------~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-------ACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-------HHHHHhhhhHHHHhcCchhhh
Confidence            4555555666666555442  2222 235666666666666665544       255555666666665554443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.00027  Score=58.02  Aligned_cols=72  Identities=21%  Similarity=0.363  Sum_probs=60.2

Q ss_pred             ccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCc--cccccCCCCCcEEeecCCCcc
Q 040192          211 VSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKD--LTFLIFAPNLKSIEVDSCYAL  288 (386)
Q Consensus       211 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~l~~l~~L~~L~l~~c~~~  288 (386)
                      ...+..++.++.|.+.+|+...+.....++.        ..++|+.|+|++|+.+++  +.++..+++|+.|.|.+.+.+
T Consensus       118 le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~--------~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  118 LEHLRDLRSIKSLSLANCKYFDDWCLERLGG--------LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             HHHHhccchhhhheeccccchhhHHHHHhcc--------cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence            3455667889999999999999888888775        689999999999999998  567889999999999986654


Q ss_pred             ch
Q 040192          289 EE  290 (386)
Q Consensus       289 ~~  290 (386)
                      ..
T Consensus       190 ~~  191 (221)
T KOG3864|consen  190 AN  191 (221)
T ss_pred             hc
Confidence            43

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.26  E-value=0.016  Score=44.93  Aligned_cols=112  Identities=21%  Similarity=0.397  Sum_probs=39.8

Q ss_pred             CccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEE
Q 040192           55 NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLD  131 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~  131 (386)
                      +++.+.+.. .+..+...  ..+++|+.+.+..+  +..++...|..++.++.+.+..+  +..+ ...+..+++|+.+.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEE
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccccc--ccccccccccccccccccc
Confidence            455555553 33333333  45556666665542  44455555556655666665432  2222 23444555666666


Q ss_pred             cCCCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCC
Q 040192          132 LSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSL  175 (386)
Q Consensus       132 l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  175 (386)
                      +..+ +..++. .+..+ +|+.+.+..+  +..++..++.++++|
T Consensus        88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   88 IPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL  128 (129)
T ss_dssp             ETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred             cCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence            5443 333322 23333 5555555432  334444445555444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.69  E-value=0.03  Score=43.43  Aligned_cols=13  Identities=15%  Similarity=0.401  Sum_probs=4.6

Q ss_pred             hcCCCcCceeccc
Q 040192           97 FQSMPRLNVLNLS  109 (386)
Q Consensus        97 ~~~l~~L~~L~l~  109 (386)
                      |.++.+|+.+.+.
T Consensus         8 F~~~~~l~~i~~~   20 (129)
T PF13306_consen    8 FYNCSNLESITFP   20 (129)
T ss_dssp             TTT-TT--EEEET
T ss_pred             HhCCCCCCEEEEC
Confidence            4444444444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.64  E-value=0.014  Score=29.78  Aligned_cols=15  Identities=40%  Similarity=0.749  Sum_probs=6.2

Q ss_pred             cCEEEcCCCCCCccc
Q 040192          127 LQHLDLSNTGIAELP  141 (386)
Q Consensus       127 L~~L~l~~~~i~~l~  141 (386)
                      |++|++++|.++.+|
T Consensus         2 L~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIP   16 (22)
T ss_dssp             ESEEEETSSEESEEG
T ss_pred             ccEEECCCCcCEeCC
Confidence            344444444444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.74  E-value=0.045  Score=25.87  Aligned_cols=15  Identities=47%  Similarity=0.709  Sum_probs=6.1

Q ss_pred             ccCEEEcCCCCCCcc
Q 040192          126 SLQHLDLSNTGIAEL  140 (386)
Q Consensus       126 ~L~~L~l~~~~i~~l  140 (386)
                      +|+.|++++|.++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555554444

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.92  E-value=0.049  Score=27.72  Aligned_cols=19  Identities=47%  Similarity=0.653  Sum_probs=10.3

Q ss_pred             CceecccCCccccccchhhc
Q 040192          103 LNVLNLSGAIRLYSFPLGIS  122 (386)
Q Consensus       103 L~~L~l~~~~~~~~~~~~~~  122 (386)
                      |++|++++| .++.+|+.|+
T Consensus         2 L~~Ldls~n-~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGN-NLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSS-EESEEGTTTT
T ss_pred             ccEEECCCC-cCEeCChhhc
Confidence            555666665 5555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.54  E-value=0.21  Score=26.48  Aligned_cols=17  Identities=24%  Similarity=0.679  Sum_probs=12.5

Q ss_pred             CCCccEEeecCcccCcC
Q 040192          330 FPHLKEMKVIHCLKLKK  346 (386)
Q Consensus       330 ~~~L~~L~i~~c~~L~~  346 (386)
                      +++|+.|+|++|++++.
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            46777888888877665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.55  E-value=0.65  Score=24.48  Aligned_cols=19  Identities=42%  Similarity=0.644  Sum_probs=11.6

Q ss_pred             CccCEEEcCCCCCCcccHh
Q 040192          125 ISLQHLDLSNTGIAELPKE  143 (386)
Q Consensus       125 ~~L~~L~l~~~~i~~l~~~  143 (386)
                      ++|+.|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.55  E-value=0.65  Score=24.48  Aligned_cols=19  Identities=42%  Similarity=0.644  Sum_probs=11.6

Q ss_pred             CccCEEEcCCCCCCcccHh
Q 040192          125 ISLQHLDLSNTGIAELPKE  143 (386)
Q Consensus       125 ~~L~~L~l~~~~i~~l~~~  143 (386)
                      ++|+.|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	386
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.1 bits (198), Expect = 9e-17
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             +  L L  N + + + +   P L  + L+ N  L +I    F  M RL  L +S   R
Sbjct: 226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-R 283

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           L +  L    + +L+ LDLS+  +  + +       L  L L+    +  +    +S+  
Sbjct: 284 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK---LSTHH 339

Query: 174 SLHVLRIFG 182
           +L  L +  
Sbjct: 340 TLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 10/131 (7%)

Query: 54  KNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
           + V  L+L + QIE +          ++ L++  NA +R +    FQ++P L VL L   
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN 127

Query: 112 IRLYSFPLGI-SKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLI 169
             L S P GI      L  L +SN  +  +  +   A  +L  L L    RLT +    +
Sbjct: 128 -DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---L 182

Query: 170 SSFSSLHVLRI 180
           S   SL    +
Sbjct: 183 SLIPSLFHANV 193

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 35/145 (24%), Positives = 51/145 (35%), Gaps = 29/145 (20%)

Query: 54  KNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
             +  L L  N + +L        P L TL ++NN  L RI+   FQ+   L  L LS  
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN 175

Query: 112 IRLYSFPLG-----------------ISKLISLQHLDLSNTGIAELPKELNALVNLTCLN 154
            RL    L                  ++  I+++ LD S+  I  +       V LT L 
Sbjct: 176 -RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILK 232

Query: 155 LEETWRLTVIPRRLISSFSSLHVLR 179
           L+    LT           +   L 
Sbjct: 233 LQHN-NLTDTA-----WLLNYPGLV 251

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.0 bits (151), Expect = 9e-11
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 59  LSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP 118
           + +    +    E  T    + +   N+  +R++ +    S  ++ +LNL+   ++    
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEID 85

Query: 119 LGI-SKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLH 176
               +   ++Q L +    I  LP      +  LT L LE    L+ +PR +  +   L 
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLT 144

Query: 177 VLR 179
            L 
Sbjct: 145 TLS 147

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 76.4 bits (188), Expect = 1e-15
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 7/129 (5%)

Query: 54  KNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
           +N   L  +  ++  + +        L  + ++ N  L  I++  F ++P+L+ + +  A
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 112 IRLYSFPLGI-SKLISLQHLDLSNTGIAELPKELNA-LVNLTCLNLEETWRLTVIPRRLI 169
             L          L +LQ+L +SNTGI  LP       +    L++++   +  I R   
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-- 147

Query: 170 SSFSSLHVL 178
            SF  L   
Sbjct: 148 -SFVGLSFE 155

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 6e-08
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 6/134 (4%)

Query: 54  KNVRRLSLME-NQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
             +  + + + N +  ++       P L+ L ++N   ++ +         +  +L++  
Sbjct: 79  PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQD 137

Query: 111 AIRLYSFPLG-ISKL-ISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRL 168
            I +++        L      L L+  GI E+         L  LNL +   L  +P  +
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 169 ISSFSSLHVLRIFG 182
               S   +L I  
Sbjct: 198 FHGASGPVILDISR 211

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 25/119 (21%)

Query: 68  NLSEVPTC--PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLI 125
            ++E+P+        L       LR I  G F     L  + +S    L      +    
Sbjct: 20  KVTEIPSDLPRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV---- 74

Query: 126 SLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSG 184
                              + L  L  + +E+   L  I      +  +L  L I  +G
Sbjct: 75  ------------------FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 77.3 bits (190), Expect = 2e-15
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             +  L L  N + + + +   P L  + L+ N  L +I    F  M RL  L +S   R
Sbjct: 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-R 289

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           L +  L    + +L+ LDLS+  +  + +       L  L L+    +  +    +S+  
Sbjct: 290 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK---LSTHH 345

Query: 174 SLHVLRIFG 182
           +L  L +  
Sbjct: 346 TLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 13/148 (8%)

Query: 43  LSETPDVRKWEKNVRR-LSLMENQIENLS-------EVPTCPYLRTLFLNNNAPLRRIDS 94
               P+ +  + N++      +  I+  +       E  T    + +   N+  +R++ +
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPA 68

Query: 95  GFFQSMPRLNVLNLSGAIRLYSFPLGI-SKLISLQHLDLSNTGIAELPKE-LNALVNLTC 152
               S  ++ +LNL+   ++        +   ++Q L +    I  LP      +  LT 
Sbjct: 69  ALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 153 LNLEETWRLTVIPRRLISSFSSLHVLRI 180
           L LE    L+ +PR +  +   L  L +
Sbjct: 128 LVLERN-DLSSLPRGIFHNTPKLTTLSM 154

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 35/145 (24%), Positives = 51/145 (35%), Gaps = 29/145 (20%)

Query: 54  KNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
             +  L L  N + +L        P L TL ++NN  L RI+   FQ+   L  L LS  
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN 181

Query: 112 IRLYSFPLG-----------------ISKLISLQHLDLSNTGIAELPKELNALVNLTCLN 154
            RL    L                  ++  I+++ LD S+  I  +       V LT L 
Sbjct: 182 -RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILK 238

Query: 155 LEETWRLTVIPRRLISSFSSLHVLR 179
           L+    LT           +   L 
Sbjct: 239 LQHN-NLTDTA-----WLLNYPGLV 257

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 9e-10
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 8/115 (6%)

Query: 54  KNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
             +++L +  N I  L        P L  L L  N  L  +  G F + P+L  L++S  
Sbjct: 99  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN 157

Query: 112 IRLYSFPLGI-SKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIP 165
             L            SLQ+L LS+  +  +   L+ + +L   N+     L+ + 
Sbjct: 158 -NLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN-LLSTLA 208

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.3 bits (183), Expect = 3e-15
 Identities = 46/180 (25%), Positives = 67/180 (37%), Gaps = 17/180 (9%)

Query: 55  NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
             +R+ L  N+I ++       C  L  L+L++N  L RID+  F  +  L  L+LS   
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA 91

Query: 113 RLYSFPLGI-SKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLIS 170
           +L S        L  L  L L   G+ EL       L  L  L L++   L  +P     
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFR 150

Query: 171 SFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFR-------RSKSLDVSALADLKRLNRL 223
              +L  L + G+  S     +    F  L           R   +   A  DL RL  L
Sbjct: 151 DLGNLTHLFLHGNRISS----VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 13/135 (9%)

Query: 55  NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG-- 110
            +  L L    ++ L          L+ L+L +NA L+ +    F+ +  L  L L G  
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNR 164

Query: 111 --AIRLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRR 167
             ++   +F      L SL  L L    +A +       L  L  L L     L+ +P  
Sbjct: 165 ISSVPERAF----RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTE 219

Query: 168 LISSFSSLHVLRIFG 182
            ++   +L  LR+  
Sbjct: 220 ALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 14/120 (11%)

Query: 68  NLSEVPTC--PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG----AIRLYSFPLGI 121
            L  VP       + +FL+ N  +  + +  F++   L +L L       I   +F    
Sbjct: 22  GLQAVPVGIPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAF---- 76

Query: 122 SKLISLQHLDLS-NTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLR 179
           + L  L+ LDLS N  +  +     + L  L  L+L+    L  +   L    ++L  L 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLY 135

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 19/126 (15%), Positives = 50/126 (39%), Gaps = 5/126 (3%)

Query: 55  NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
           + + L L+E  +  +        P +  ++++ +  L++++S  F ++ ++  + +    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 113 RLYSFPLGI-SKLISLQHLDLSNTGIAELPKE--LNALVNLTCLNLEETWRLTVIPRRLI 169
            L         +L  L+ L + NTG+   P    + +      L + +   +T IP    
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 170 SSFSSL 175
               + 
Sbjct: 152 QGLCNE 157

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 12/137 (8%)

Query: 55  NVRRLSLMENQIENLSEVPT-----CPYLRTLFLNNNAPLRRI-DSGFFQSMPRLNVLNL 108
            V  + +   +  NL+ +        P L+ L + N   L+   D     S     +L +
Sbjct: 81  KVTHIEIRNTR--NLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEI 137

Query: 109 SGAIRLYSFPLGI-SKLIS-LQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPR 166
           +    + S P+     L +    L L N G   +         L  + L +   LTVI +
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 167 RLISS-FSSLHVLRIFG 182
                 +S   +L +  
Sbjct: 198 DAFGGVYSGPSLLDVSQ 214

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 12/128 (9%)

Query: 42  GLSETPDVRKWE--KNVRRLSLMEN-QIENLSE---VPTCPYLRTLFLNNNAPLRRIDSG 95
           GL   PD+ K         L + +N  + ++        C    TL L NN     +   
Sbjct: 116 GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGY 174

Query: 96  FFQSMPRLNVLNLSGAIRLYSFPLGI-SKLIS-LQHLDLSNTGIAELPKELNALVNLTCL 153
            F    +L+ + L+    L          + S    LD+S T +  LP     L +L  L
Sbjct: 175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS--KGLEHLKEL 231

Query: 154 NLEETWRL 161
               TW L
Sbjct: 232 IARNTWTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 26/117 (22%)

Query: 68  NLSEVPTCPY-LRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLIS 126
           ++  +P+ P   +TL L     LR I S  F ++P ++ + +S                 
Sbjct: 22  DIQRIPSLPPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVS----------------- 63

Query: 127 LQHLDLSNTGIAELPKEL-NALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFG 182
                  +  + +L       L  +T + +  T  LT I    +     L  L IF 
Sbjct: 64  ------IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 75.5 bits (186), Expect = 4e-15
 Identities = 54/319 (16%), Positives = 94/319 (29%), Gaps = 50/319 (15%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             +  L    + I +++ +     L  L   +N  +  +D         L  L      +
Sbjct: 42  ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLACDS-NK 96

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           L +    ++ L  L +L+     + +L   ++    LT LN      LT I    +S  +
Sbjct: 97  LTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNT 148

Query: 174 SLHVLRIFGSGYSYSDGMIGNGEFEQL-CGFRRSKSLDVSALADLKRLN-------RLKI 225
            L  L    +       +    +   L C F +   LDVS    L RLN       +L +
Sbjct: 149 QLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDL 208

Query: 226 AECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYC----------KELKDLTFLIFAP 275
            +   L  L         N         L +     C            L  LT L    
Sbjct: 209 NQNIQLTFLDCSS-----NKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ 263

Query: 276 N-LKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLK 334
             L  I++     L                   +   L  ++   L  +         + 
Sbjct: 264 TDLLEIDLTHNTQLIYF----------QAEGCRKIKELDVTHNTQLYLLD---CQAAGIT 310

Query: 335 EMKVIHCLKLKKLPLDSNR 353
           E+ +    KL  L L++  
Sbjct: 311 ELDLSQNPKLVYLYLNNTE 329

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 54/300 (18%), Positives = 91/300 (30%), Gaps = 76/300 (25%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             +  L+   N +  + +V     L  L  + N   ++I         +L  L+ S   +
Sbjct: 127 PLLTYLNCARNTLTEI-DVSHNTQLTELDCHLN---KKITKLDVTPQTQLTTLDCSFN-K 181

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           +      +S+   L  L+     I +L   LN  + LT L+     +LT I    ++  +
Sbjct: 182 ITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSN-KLTEID---VTPLT 233

Query: 174 SLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAE 233
            L                  N     L        LDVS L+ L  L+      C     
Sbjct: 234 QLTYFDCSV-----------N----PL------TELDVSTLSKLTTLH------CIQT-- 264

Query: 234 LKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVS 293
                               L +  +++  +L           +K ++V     L  +  
Sbjct: 265 -------------------DLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLL-- 302

Query: 294 DVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNR 353
                   +    A    L  S  P L  +Y   L    L E+ V H  KLK L   +  
Sbjct: 303 --------DCQ-AAGITELDLSQNPKLVYLY---LNNTELTELDVSHNTKLKSLSCVNAH 350

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 17/125 (13%), Positives = 42/125 (33%), Gaps = 12/125 (9%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             +  L  ++  +  +  +     L          ++ +D        +L +L+   A  
Sbjct: 254 SKLTTLHCIQTDLLEID-LTHNTQLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAA-G 308

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           +      +S+   L +L L+NT + EL   ++    L  L+      +       +    
Sbjct: 309 ITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNA-HIQDFS--SVGKIP 361

Query: 174 SLHVL 178
           +L+  
Sbjct: 362 ALNNN 366

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             +  L      I  L ++   P L  L+LNN   L  +D        +L  L+   A  
Sbjct: 297 TQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNT-ELTELD---VSHNTKLKSLSCVNA-H 350

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLT 151
           +  F   + K+ +L +   +      +PKE     +LT
Sbjct: 351 IQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLT 387

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 44/257 (17%), Positives = 85/257 (33%), Gaps = 39/257 (15%)

Query: 118 PLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHV 177
            +   +L +L  LD  N+ I ++   +  L  LT L       +T +    +S  ++L  
Sbjct: 35  TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD---LSQNTNLTY 89

Query: 178 LRIFGSGYSYSDGMIGNGEFEQL-CGFRRSKSLDVSALADLKRL----NRLKIAECYGLA 232
           L    +  +  D +    +   L C   +   LDVS    L  L    N L   +     
Sbjct: 90  LACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNT 148

Query: 233 ELKMDYKSVVQNTGQSFVFH--SLKKFQISYCK-------ELKDLTFLIFAPN-LKSIEV 282
           +L      + +   +  V     L     S+ K       + K L  L    N +  +++
Sbjct: 149 QLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDL 208

Query: 283 DSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYR-----KPLPFPHLKEMK 337
           +    L  +          + +   +   +  + L  L            L    L ++ 
Sbjct: 209 NQNIQLTFL----------DCS-SNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLT 257

Query: 338 VIHCL--KLKKLPLDSN 352
            +HC+   L ++ L  N
Sbjct: 258 TLHCIQTDLLEIDLTHN 274

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.5 bits (186), Expect = 4e-15
 Identities = 61/283 (21%), Positives = 99/283 (34%), Gaps = 50/283 (17%)

Query: 55  NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
             R L L +N+I+ L++    + P+L  L LN N  +  ++ G F ++  L  L L    
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRS-N 90

Query: 113 RLYSFPLGI-SKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETWRLTVIPRRLIS 170
           RL   PLG+ + L +L  LD+S   I  L   +   L NL  L + +   L  I  R  S
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFS 149

Query: 171 SFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFR-------RSKSLDVSALADLKRLNRL 223
             +SL  L +     +     I       L G            ++   +   L RL  L
Sbjct: 150 GLNSLEQLTLEKCNLT----SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205

Query: 224 KIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFA--PNLKSIE 281
           +I+    L  +          T       +L    I++C  L  + +L       L+ + 
Sbjct: 206 EISHWPYLDTM----------TPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLN 254

Query: 282 VDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIY 324
           +                     NP +         L  L+ I 
Sbjct: 255 LSY-------------------NPISTIEGSMLHELLRLQEIQ 278

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.4 bits (183), Expect = 1e-14
 Identities = 32/182 (17%), Positives = 68/182 (37%), Gaps = 16/182 (8%)

Query: 55  NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
           ++ +L+L +  + ++          L  L L +   +  I    F+ + RL VL +S   
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWP 211

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISS 171
            L +        ++L  L +++  +  +P   +  LV L  LNL     ++ I   ++  
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHE 270

Query: 172 FSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFR-------RSKSLDVSALADLKRLNRLK 224
              L  +++ G   +     +    F  L   R       +  +L+ S    +  L  L 
Sbjct: 271 LLRLQEIQLVGGQLAV----VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326

Query: 225 IA 226
           + 
Sbjct: 327 LD 328

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 17/138 (12%)

Query: 54  KNVRRLSLMENQIENLSEVP----TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS 109
             ++ L +       L  +         L +L + +   L  +     + +  L  LNLS
Sbjct: 200 YRLKVLEISHWPY--LDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLS 256

Query: 110 G----AIRLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVI 164
                 I          +L+ LQ + L    +A +       L  L  LN+    +LT +
Sbjct: 257 YNPISTIEGSML----HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTL 311

Query: 165 PRRLISSFSSLHVLRIFG 182
              +  S  +L  L +  
Sbjct: 312 EESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.3 bits (162), Expect = 4e-12
 Identities = 31/131 (23%), Positives = 47/131 (35%), Gaps = 7/131 (5%)

Query: 54  KNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
            N+R L L  N+++ +          L  L ++ N  +  +    FQ +  L  L +   
Sbjct: 80  FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGD- 137

Query: 112 IRLYSFPLGI-SKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLI 169
             L        S L SL+ L L    +  +P E L+ L  L  L L     +  I     
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSF 196

Query: 170 SSFSSLHVLRI 180
                L VL I
Sbjct: 197 KRLYRLKVLEI 207

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 29/136 (21%), Positives = 46/136 (33%), Gaps = 17/136 (12%)

Query: 54  KNVRRLSLMENQIENLSEVPTC----PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS 109
            N+ +L + EN+I  L            L++L + +N  L  I    F  +  L  L L 
Sbjct: 104 SNLTKLDISENKIVILL--DYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLE 160

Query: 110 G----AIRLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVI 164
                +I   +     S L  L  L L +  I  +       L  L  L +     L  +
Sbjct: 161 KCNLTSIPTEAL----SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 165 PRRLISSFSSLHVLRI 180
               +    +L  L I
Sbjct: 217 TPNCLYGL-NLTSLSI 231

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 41/267 (15%), Positives = 84/267 (31%), Gaps = 56/267 (20%)

Query: 101 PRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETW 159
            +   +      R  + P GI      + LDL    I  L ++   +  +L  L L E  
Sbjct: 11  AQDRAVLCHRK-RFVAVPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN- 66

Query: 160 RLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKR 219
            ++ +     ++  +L  L +             N    +L      K + +     L  
Sbjct: 67  IVSAVEPGAFNNLFNLRTLGLR-----------SN----RL------KLIPLGVFTGLSN 105

Query: 220 LNRLKIAECYGLAELKMDYKSVVQNTGQSFV-FHSLKKFQISYCKELKDLTFLIFA--PN 276
           L +L I+E   +  L              F   ++LK  ++     L  ++   F+   +
Sbjct: 106 LTKLDISENK-IVILL----------DYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNS 153

Query: 277 LKSIEVDSCYALEEIVSDVPEVMMGNL----------NPFAQFHFLCFSYLPNLKSIYRK 326
           L+ + ++ C      ++ +P   + +L                    F  L  LK +   
Sbjct: 154 LEQLTLEKCN-----LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

Query: 327 PLPFPHLKEMKVIHCLKLKKLPLDSNR 353
             P+        ++ L L  L +    
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCN 235

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.1 bits (187), Expect = 5e-15
 Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 11/135 (8%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             +  L  + N++ +L    T   L  L L+ N  +  I   F     ++  L  S   +
Sbjct: 573 VKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSH-NK 630

Query: 114 LYSFP--LGISKLISLQHLDLSNTGIAELPKELNA------LVNLTCLNLEETWRLTVIP 165
           L   P       +  +  +D S   I    + ++        +N + + L     +   P
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFP 689

Query: 166 RRLISSFSSLHVLRI 180
             L ++ S +  + +
Sbjct: 690 TELFATGSPISTIIL 704

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 5e-11
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 54  KNVRRLSLMENQIENL--SEVPTCPYLRTLFLNNN------APLRRIDSGFFQSMPRLNV 105
            N   ++L  N+I+        T   + T+ L+NN          +   G +++   L  
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

Query: 106 LNLSGAIRLYSFP--LGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRL-- 161
           ++L    +L S       + L  L ++D+S    +  P +      L    +        
Sbjct: 733 IDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEG 791

Query: 162 ----TVIPRRLISSFSSLHVLRI 180
                  P   I++  SL  L+I
Sbjct: 792 NRILRQWP-TGITTCPSLIQLQI 813

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 54  KNVRRLSLMENQIENLSE---VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
             +  + L  N++ +LS+     T PYL  + ++ N       +       +L    +  
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLN-SSQLKAFGIRH 785

Query: 111 AIRLYS------FPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNL 155
                       +P GI+   SL  L + +  I ++ ++L     L  L++
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDI 834

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 12/136 (8%), Positives = 33/136 (24%), Gaps = 16/136 (11%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             ++ +    +     +             +        +  +   +  L  + L     
Sbjct: 448 TKLQIIYFANSP---FTYDNIAVDWEDANSDYAKQYENEELSWSN-LKDLTDVELYNCPN 503

Query: 114 LYSFPLGISKLISLQHLDLSN----------TGIAELPKELNALVNLTCLNLEETWRLTV 163
           +   P  +  L  LQ L+++                L  + +    +    +     L  
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEE 562

Query: 164 IP-RRLISSFSSLHVL 178
            P    +     L +L
Sbjct: 563 FPASASLQKMVKLGLL 578

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 19/139 (13%)

Query: 54  KNVRRLSLMENQIENLSEVPT----CPYLRTLFLNNN---------APLRRIDSGFFQSM 100
           K++  + L      N++++P      P L++L +  N         A   R+ +    + 
Sbjct: 491 KDLTDVELYNCP--NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL-ADDEDTG 547

Query: 101 PRLNVLNLSG-AIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETW 159
           P++ +  +    +  +     + K++ L  LD  +  +  L       V LT L L+   
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN- 605

Query: 160 RLTVIPRRLISSFSSLHVL 178
           ++  IP    +    +  L
Sbjct: 606 QIEEIPEDFCAFTDQVEGL 624

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 30/188 (15%), Positives = 71/188 (37%), Gaps = 12/188 (6%)

Query: 55  NVRRLSLMENQIENL--SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
            V  LSL     +      +     L+ L    ++          + +           I
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETW------RLTVIPR 166
           R++   + +     L   DL    I   P E+  +   + ++L++T       R+T I +
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 167 RLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIA 226
             I   + L ++    S ++Y +  + + E       ++ ++ ++S  ++LK L  +++ 
Sbjct: 443 A-IQRLTKLQIIYFANSPFTYDNIAV-DWEDANSDYAKQYENEELS-WSNLKDLTDVELY 499

Query: 227 ECYGLAEL 234
            C  + +L
Sbjct: 500 NCPNMTQL 507

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 19/137 (13%), Positives = 39/137 (28%), Gaps = 8/137 (5%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRID--SGFFQSMPRLNVLNLSGA 111
             ++ LS   +       +     L            R+     F     RLN+ +L   
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406

Query: 112 IRLY---SFPLGISKLISLQHLDLSNT--GIAELPKELNALVNLTCLNLEETWRLTVIPR 166
                    P+     ISL+   + N    I  + K +  L  L  +    +   T    
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS-PFTYDNI 465

Query: 167 RLISSFSSLHVLRIFGS 183
            +    ++    + + +
Sbjct: 466 AVDWEDANSDYAKQYEN 482

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.8 bits (184), Expect = 8e-15
 Identities = 46/305 (15%), Positives = 97/305 (31%), Gaps = 40/305 (13%)

Query: 55  NVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
            ++ L L  N+I  +    +  C  L+ L L ++  +  I+   F S+  L  L+LS   
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSD-N 84

Query: 113 RLYSFPLG-ISKLISLQHLDLSNTGIAELPK--ELNALVNLTCLNLEETWRLTVIPRRLI 169
            L S        L SL++L+L       L        L NL  L +      + I R   
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 170 SSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECY 229
           +  +SL+ L I                   L      ++    +L  ++ ++ L +    
Sbjct: 145 AGLTSLNELEIKAL---------------SL------RNYQSQSLKSIRDIHHLTLHLSE 183

Query: 230 GLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALE 289
                      +++         S++  ++     L    F     +  S  +       
Sbjct: 184 --------SAFLLEIFADI--LSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRG 232

Query: 290 EIVSDVPEVMMGNL-NPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLP 348
            +++D     +  L     +   + F            P     + E+  +  + +++L 
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 349 LDSNR 353
           +    
Sbjct: 293 IPQFY 297

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 39/283 (13%), Positives = 87/283 (30%), Gaps = 28/283 (9%)

Query: 54  KNVRRLSLMENQIENLSEVP--TCPYLRTLFLNNNAPLRRI-DSGFFQSMPRLNVLNLSG 110
            ++  L L +N + +LS         L+ L L  N P + +  +  F ++  L  L +  
Sbjct: 74  GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGN 132

Query: 111 AIRLYSFPLG-ISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRL 168
                       + L SL  L++    +     + L ++ ++  L L  +     +    
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIF 191

Query: 169 ISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAEC 228
               SS+  L +  +  +                    K L         R + L     
Sbjct: 192 ADILSSVRYLELRDTNLA----RFQFSPLPVDEVSSPMKKLAF-------RGSVLTDESF 240

Query: 229 YGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYAL 288
             L +L      + +        + L  F  S    + +L  +     ++ + +   Y L
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET-VTIRRLHIPQFY-L 298

Query: 289 EEIVSDVPEVMMGNL-------NPFAQFHFLCFSYLPNLKSIY 324
              +S V  ++   +       +           +L +L+ + 
Sbjct: 299 FYDLSTVYSLLE-KVKRITVENSKVFLVPCSFSQHLKSLEFLD 340

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 10/140 (7%)

Query: 47  PDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNA--PLRRIDSGFFQSMPR 102
             V    + V+R+++  +++  +          L  L L+ N        +S    + P 
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 103 LNVLNLSGA--IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWR 160
           L  L LS      +      +  L +L  LD+S      +P        +  LNL  T  
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-G 421

Query: 161 LTVIPRRLISSFSSLHVLRI 180
           + V+   +     +L VL +
Sbjct: 422 IRVVKTCI---PQTLEVLDV 438

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 29/151 (19%)

Query: 55  NVRRLSLMENQIENLSEVP----TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
           +++ L L +N + ++ +      T   L +L ++ N     +     Q   ++  LNLS 
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSC-QWPEKMRFLNLSS 419

Query: 111 AIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALV-------------------NLT 151
              +      I    +L+ LD+SN  +      L  L                     L 
Sbjct: 420 T-GIRVVKTCI--PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLL 476

Query: 152 CLNLEETWRLTVIPRRLISSFSSLHVLRIFG 182
            + +    +L  +P  +    +SL  + +  
Sbjct: 477 VMKISRN-QLKSVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 13/116 (11%)

Query: 43  LSETPDVRKWEKNVRRLSLMENQIENLSEVPTC--PYLRTLFLNNNAPLRRIDSGFFQSM 100
               PD  +W + +R L+L       +  V TC    L  L ++NN     +DS F   +
Sbjct: 399 FHPMPDSCQWPEKMRFLNLSSTG---IRVVKTCIPQTLEVLDVSNN----NLDS-FSLFL 450

Query: 101 PRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNL 155
           PRL  L +S   +L + P   S    L  + +S   +  +P    + L +L  + L
Sbjct: 451 PRLQELYISR-NKLKTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 7/142 (4%)

Query: 42  GLSETPDVRKWEKNVRRLSLMENQIENLSEVPT---CPYLRTLFLNNNAPLRRIDSGFFQ 98
           G           + ++ L    + ++ ++E         L  L ++     +    G F 
Sbjct: 387 GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFL 445

Query: 99  SMPRLNVLNLSG-AIRLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLE 156
            +  LN L ++G + +  +     +   +L  LDLS   + ++     + L  L  LN+ 
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 157 ETWRLTVIPRRLISSFSSLHVL 178
               L  +     +   SL  L
Sbjct: 506 HN-NLLFLDSSHYNQLYSLSTL 526

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 34/239 (14%), Positives = 78/239 (32%), Gaps = 32/239 (13%)

Query: 54  KNVRRLSLMENQIENLSEVP--TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG- 110
            ++  L  +E ++ +L   P      L+ L + +N         +F ++  L  ++LS  
Sbjct: 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

Query: 111 ---AIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRR 167
               I +               LD+S   I  +  +    + L  L L   +  + I + 
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKT 223

Query: 168 LISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAE 227
            + + + LHV R+                  +    R  +  + S +  L  +       
Sbjct: 224 CLQNLAGLHVHRL---------------ILGEFKDERNLEIFEPSIMEGLCDVTID---- 264

Query: 228 CYGLAELKMDYKSVVQNTGQSFV-FHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSC 285
                E ++ Y +   +    F    ++    ++    +K L  +      +S+ +  C
Sbjct: 265 -----EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRC 317

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 6/131 (4%)

Query: 54  KNVRRLSLMENQIENL--SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
           + +  L +     +            L TL +  N+      S  F +   L  L+LS  
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK- 482

Query: 112 IRLYSFPLGI-SKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLI 169
            +L     G+   L  LQ L++S+  +  L     N L +L+ L+     R+      L 
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQ 541

Query: 170 SSFSSLHVLRI 180
               SL    +
Sbjct: 542 HFPKSLAFFNL 552

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 53/305 (17%), Positives = 111/305 (36%), Gaps = 25/305 (8%)

Query: 55  NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
           + + + L  N ++ L          L+ L L+    +  I+   +  +  L+ L L+G  
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTG-N 90

Query: 113 RLYSFPLG-ISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLIS 170
            + SF  G  S L SL++L    T +A L    +  L+ L  LN+   +  +       S
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 171 SFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRS-KSLDVSALADLKRLNRLKIAECY 229
           + ++L  + +  S        I   + + L    +   SLD+S       LN +   +  
Sbjct: 151 NLTNLVHVDL--SYNYIQT--ITVNDLQFLRENPQVNLSLDMS-------LNPIDFIQDQ 199

Query: 230 GLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALE 289
               +K+   ++  N   S +  +    Q      +  L    F  + +++E+     +E
Sbjct: 200 AFQGIKLHELTLRGNFNSSNIMKTC--LQNLAGLHVHRLILGEF-KDERNLEIFEPSIME 256

Query: 290 EIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMK-VIHCLKLKKLP 348
            +     +              + F  L N+ ++    L    +K ++ V    K + L 
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS---LAGVSIKYLEDVPKHFKWQSLS 313

Query: 349 LDSNR 353
           +   +
Sbjct: 314 IIRCQ 318

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 11/129 (8%)

Query: 55  NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGF-FQSMPRLNVLNLSG-AI 112
             + LS++  Q++    +   P+L++L L  N    +    F   ++P L+ L+LS  A+
Sbjct: 308 KWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMN----KGSISFKKVALPSLSYLDLSRNAL 362

Query: 113 R-LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISS 171
                         SL+HLDLS  G   +      L  L  L+ + +  L  +     S+
Sbjct: 363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEF--SA 419

Query: 172 FSSLHVLRI 180
           F SL  L  
Sbjct: 420 FLSLEKLLY 428

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 54  KNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
            N+  L L + Q+E +S     T   L+ L +++N  L  +DS  +  +  L+ L+ S  
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFN 531

Query: 112 IRLYSFPLGI-SKLISLQHLDLSN 134
            R+ +    +     SL   +L+N
Sbjct: 532 -RIETSKGILQHFPKSLAFFNLTN 554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 7/133 (5%)

Query: 55  NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
            V+ L L  N+I  +S      C  L+ L L +N  +  I+   F S+  L  L+LS   
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSY-N 110

Query: 113 RLYSFPLGI-SKLISLQHLDLSNTGIAELPKE--LNALVNLTCLNLEETWRLTVIPRRLI 169
            L +        L SL  L+L       L +    + L  L  L +      T I R+  
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 170 SSFSSLHVLRIFG 182
           +  + L  L I  
Sbjct: 171 AGLTFLEELEIDA 183

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.8 bits (158), Expect = 8e-12
 Identities = 17/138 (12%), Positives = 47/138 (34%), Gaps = 12/138 (8%)

Query: 55  NVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG-- 110
            +  L +  + +++     + +   +  L L+       +   F      +  L L    
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTD 233

Query: 111 --AIRLYSFPLGIS----KLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVI 164
                      G +    K  + +++ +++  + ++ K LN +  L  L      +L  +
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSV 292

Query: 165 PRRLISSFSSLHVLRIFG 182
           P  +    +SL  + +  
Sbjct: 293 PDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 10/135 (7%)

Query: 54  KNVRRLSLMENQIENLSEVPT---CPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
            ++  L+L+ N  + L E         L+ L + N     +I    F  +  L  L +  
Sbjct: 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183

Query: 111 AIRLYSFPLGI-SKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETW----RLTVI 164
           +  L S+       + ++ HL L       L +   +   ++ CL L +T       + +
Sbjct: 184 S-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242

Query: 165 PRRLISSFSSLHVLR 179
                +S       R
Sbjct: 243 STGETNSLIKKFTFR 257

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 54  KNVRRLSLMENQIENLSEVPT---CPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
           + +  L    + ++ +SE         L  L +++    R   +G F  +  L VL ++G
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAG 454

Query: 111 -AIRLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRL 168
            + +    P   ++L +L  LDLS   + +L     N+L +L  LN+    +L  +P  +
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGI 513

Query: 169 ISSFSSLHVLRI 180
               +SL  + +
Sbjct: 514 FDRLTSLQKIWL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 59/308 (19%), Positives = 110/308 (35%), Gaps = 32/308 (10%)

Query: 55  NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
           + + L L  N + +L      + P L+ L L+    ++ I+ G +QS+  L+ L L+G  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG-N 86

Query: 113 RLYSFPLGI-SKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPR-RLI 169
            + S  LG  S L SLQ L    T +A L    +  L  L  LN+     +         
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYF 145

Query: 170 SSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSK-SLDVSALADLKRLNRLKIAEC 228
           S+ ++L  L +  +        I   +   L        SLD+S       LN +   + 
Sbjct: 146 SNLTNLEHLDLSSNKIQS----IYCTDLRVLHQMPLLNLSLDLS-------LNPMNFIQP 194

Query: 229 YGLAELKMDYKSVVQN----TGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDS 284
               E+++   ++  N             L   ++        L       NL+  +  +
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL----VLGEFRNEGNLEKFDKSA 250

Query: 285 CYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKL 344
              L  +   + E  +  L+ +       F+ L N+ S     +    +K+    +    
Sbjct: 251 LEGLCNL--TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGW 306

Query: 345 KKLPLDSN 352
           + L L + 
Sbjct: 307 QHLELVNC 314

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.9 bits (161), Expect = 6e-12
 Identities = 48/316 (15%), Positives = 97/316 (30%), Gaps = 47/316 (14%)

Query: 54  KNVRRLSLMENQIENLSEVP--TCPYLRTLFLNNNAPLRRIDSG-FFQSMPRLNVLNLSG 110
            ++++L  +E  + +L   P      L+ L + +N  ++      +F ++  L  L+LS 
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSS 158

Query: 111 ----AIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPR 166
               +I      +     +    LDLS   +  +       + L  L L   +    + +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 167 RLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIA 226
             I   + L V R+                  +       +  D SAL  L  L   +  
Sbjct: 219 TCIQGLAGLEVHRL---------------VLGEFRNEGNLEKFDKSALEGLCNLTIEEF- 262

Query: 227 ECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCY 286
                  L      +           ++  F +     ++ +    +    + +E+ +C 
Sbjct: 263 ------RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCK 315

Query: 287 ALEEIVSDVPEVMMGNL-------NPFAQFHFLCFSYLPNLKSIY--RKPLPFPHLKEMK 337
                    P + + +L       N     +      LP+L+ +   R  L F       
Sbjct: 316 -----FGQFPTLKLKSLKRLTFTSNKGG--NAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 338 VIHCLKLKKLPLDSNR 353
                 LK L L  N 
Sbjct: 369 DFGTTSLKYLDLSFNG 384

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 23/158 (14%)

Query: 43  LSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAP----------LRRI 92
           L +  D+     NV   SL+   IE + +       + L L N             L+R+
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330

Query: 93  D--------SGFFQSMPRLNVLNLSG-AIRLYSFPLG-ISKLISLQHLDLSNTGIAELPK 142
                    +     +P L  L+LS   +              SL++LDLS  G+  +  
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390

Query: 143 ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRI 180
               L  L  L+ + +  L  +     S F SL  L  
Sbjct: 391 NFLGLEQLEHLDFQHS-NLKQMSEF--SVFLSLRNLIY 425

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 54  KNVRRLSLMENQIEN--LSEVPTC-PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
            ++  L +  N  +   L ++ T    L  L L+    L ++    F S+  L VLN++ 
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMAS 503

Query: 111 AIRLYSFPLGI-SKLISLQHLDLSN 134
             +L S P GI  +L SLQ + L  
Sbjct: 504 -NQLKSVPDGIFDRLTSLQKIWLHT 527

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.9 bits (179), Expect = 3e-14
 Identities = 39/132 (29%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 55  NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
           N R L+LMEN I+ +         +L  L L  N  +R+I+ G F  +  LN L L    
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN- 133

Query: 113 RLYSFPLGI-SKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLIS 170
            L   P G    L  L+ L L N  I  +P    N + +L  L+L E  +L  I      
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 171 SFSSLHVLRIFG 182
              +L  L +  
Sbjct: 194 GLFNLKYLNLGM 205

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.6 bits (168), Expect = 7e-13
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 55  NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
            +R L L  N IE++        P L  L L     L  I  G F+ +  L  LNL    
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC- 206

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISS 171
            +   P  ++ L+ L+ L++S     E+     + L +L  L +  + ++++I R     
Sbjct: 207 NIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDG 264

Query: 172 FSSLHVLRIFG 182
            +SL  L +  
Sbjct: 265 LASLVELNLAH 275

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 27/129 (20%)

Query: 55  NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRL 114
           N++ L+L    I+++  +     L  L ++ N     I  G F  +  L  L +  + ++
Sbjct: 197 NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNS-QV 254

Query: 115 YSFPLG-ISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
                     L SL  L+L++                   N      L+ +P  L +   
Sbjct: 255 SLIERNAFDGLASLVELNLAH-------------------N-----NLSSLPHDLFTPLR 290

Query: 174 SLHVLRIFG 182
            L  L +  
Sbjct: 291 YLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 19/134 (14%)

Query: 54  KNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG- 110
            ++  L L  N I  +          L TL L +N  L  I SG F+ + +L  L L   
Sbjct: 99  HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN 157

Query: 111 ---AIRLYSFPLGISKLISLQHLDLSNTG-IAELPKE-LNALVNLTCLNLEETWRLTVIP 165
              +I  Y+F    +++ SL  LDL     +  + +     L NL  LNL     +  +P
Sbjct: 158 PIESIPSYAF----NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP 212

Query: 166 RRLISSFSSLHVLR 179
                + + L  L 
Sbjct: 213 -----NLTPLVGLE 221

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 54  KNVRRLSLMENQIENLSEVP--TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
             +  L +  N    +          L+ L++ N+  +  I+   F  +  L  LNL+  
Sbjct: 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN 276

Query: 112 IRLYSFPLGI-SKLISLQHLDLSN 134
             L S P  + + L  L  L L +
Sbjct: 277 -NLSSLPHDLFTPLRYLVELHLHH 299

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.8 bits (176), Expect = 5e-14
 Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 55  NVRRLSLMENQIENLSEVPTC---PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
               L L  N +  L    T      L +L L++N  L  I S  F  +P L  L+LS  
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN 98

Query: 112 IRLYSFPLGI-SKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLI 169
             L++    + S L +L+ L L N  I  + +     +  L  L L +  +++  P  LI
Sbjct: 99  -HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELI 156

Query: 170 SSFSSLHVLR 179
              + L  L 
Sbjct: 157 KDGNKLPKLM 166

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 16/137 (11%)

Query: 54  KNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG- 110
            N+  L L  N +  +S       P LR L L++N  L  +D   F  +  L VL L   
Sbjct: 64  TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNN 122

Query: 111 ---AIRLYSFPLGISKLISLQHLDLSNTGIAELPKE----LNALVNLTCLNLEETWRLTV 163
               +   +F      +  LQ L LS   I+  P E     N L  L  L+L    +L  
Sbjct: 123 HIVVVDRNAF----EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKK 177

Query: 164 IPRRLISSFSSLHVLRI 180
           +P   +    +     +
Sbjct: 178 LPLTDLQKLPAWVKNGL 194

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.2 bits (175), Expect = 6e-14
 Identities = 25/130 (19%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 54  KNVRRLSLMENQIENL-SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG-A 111
             + RL L +NQ++ L  ++P    L+ L ++ N  + ++    F  + ++ V+ L    
Sbjct: 100 VKLERLYLSKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNP 156

Query: 112 IRLYSFPLGI-SKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLIS 170
           ++      G    +  L ++ +++T I  +P+      +LT L+L+   ++T +    + 
Sbjct: 157 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGN-KITKVDAASLK 213

Query: 171 SFSSLHVLRI 180
             ++L  L +
Sbjct: 214 GLNNLAKLGL 223

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 23/136 (16%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
           K +  + + +  I  + +    P L  L L+ N  + ++D+   + +  L  L LS    
Sbjct: 171 KKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-S 227

Query: 114 LYSFPLGI-SKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRR----- 167
           + +   G  +    L+ L L+N  + ++P  L     +  + L     ++ I        
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPP 286

Query: 168 -LISSFSSLHVLRIFG 182
              +  +S   + +F 
Sbjct: 287 GYNTKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 10/132 (7%)

Query: 54  KNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
            +   L L  N+I  + +        L TL L NN  + +I  G F  + +L  L LS  
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSK- 109

Query: 112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLT--VIPRRL 168
            +L   P  +    +LQ L +    I ++ K   N L  +  + L     L    I    
Sbjct: 110 NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGA 166

Query: 169 ISSFSSLHVLRI 180
                 L  +RI
Sbjct: 167 FQGMKKLSYIRI 178

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 16/139 (11%)

Query: 68  NLSEVPTC--PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG----AIRLYSFPLGI 121
            L +VP    P    L L NN  +  I  G F+++  L+ L L       I   +F    
Sbjct: 42  GLEKVPKDLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAF---- 96

Query: 122 SKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIF 181
           + L+ L+ L LS   + ELP+++     L  L + E   +T + + + +  + + V+ + 
Sbjct: 97  APLVKLERLYLSKNQLKELPEKM--PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVEL- 152

Query: 182 GSGYSYSDGMIGNGEFEQL 200
                     I NG F+ +
Sbjct: 153 -GTNPLKSSGIENGAFQGM 170

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 13/113 (11%)

Query: 54  KNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG- 110
            N+ +L L  N I  +        P+LR L LNNN  L ++  G       + V+ L   
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLA-DHKYIQVVYLHNN 273

Query: 111 ---AIRLYSF--PLGISKLISLQHLDLSNTGI--AELPKEL-NALVNLTCLNL 155
              AI    F  P   +K  S   + L +  +   E+       +     + L
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 326

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 55  NVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDS------GFFQSMPRLNVLN 107
           ++R L L  N++  +        Y++ ++L+NN  +  I S      G+       + ++
Sbjct: 241 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVS 299

Query: 108 LSG-AIRLYSFPLGI-SKLISLQHLDLSN 134
           L    ++ +         +     + L N
Sbjct: 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 55  NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
           N R L+L ENQI+ +         +L  L L+ N  +R I+ G F  +  LN L L    
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN- 122

Query: 113 RLYSFPLGI-SKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETWRLTVIPRRLIS 170
           RL + P G    L  L+ L L N  I  +P    N + +L  L+L E  RL+ I      
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 171 SFSSLHVLRI 180
             S+L  L +
Sbjct: 183 GLSNLRYLNL 192

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.6 bits (168), Expect = 7e-13
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 4/103 (3%)

Query: 55  NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRL 114
           N+R L+L    +  +  +     L  L L+ N  L  I  G FQ +  L  L +  + ++
Sbjct: 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QI 243

Query: 115 YSFPLG-ISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNL 155
                     L SL  ++L++  +  LP +    L +L  ++L
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 6/131 (4%)

Query: 55  NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
            ++ L L  N IE++        P LR L L     L  I  G F+ +  L  LNL+   
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC- 195

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISS 171
            L   P  ++ LI L  LDLS   ++ +       L++L  L + ++ ++ VI R    +
Sbjct: 196 NLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDN 253

Query: 172 FSSLHVLRIFG 182
             SL  + +  
Sbjct: 254 LQSLVEINLAH 264

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 43/206 (20%), Positives = 67/206 (32%), Gaps = 41/206 (19%)

Query: 54  KNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG- 110
           +++  L L  N I  +          L TL L +N  L  I +G F  + +L  L L   
Sbjct: 88  RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNN 146

Query: 111 ---AIRLYSF--------------------PLGI-SKLISLQHLDLSNTGIAELPKELNA 146
              +I  Y+F                      G    L +L++L+L+   + E+P  L  
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTP 205

Query: 147 LVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFR-- 204
           L+ L  L+L     L+ I          L  L +  S        I    F+ L      
Sbjct: 206 LIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQV----IERNAFDNLQSLVEI 260

Query: 205 -----RSKSLDVSALADLKRLNRLKI 225
                    L       L  L R+ +
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 39/168 (23%), Positives = 58/168 (34%), Gaps = 33/168 (19%)

Query: 68  NLSEVPTC--PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG----AIRLYSFPLGI 121
           NL EVP       R L L+ N  ++ I    F+ +  L +L LS      I + +F    
Sbjct: 54  NLREVPDGISTNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF---- 108

Query: 122 SKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRI 180
           + L +L  L+L +  +  +P      L  L  L L     +  IP    +   SL  L  
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLD- 166

Query: 181 FGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAEC 228
                              L   +R   +   A   L  L  L +A C
Sbjct: 167 -------------------LGELKRLSYISEGAFEGLSNLRYLNLAMC 195

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 54  KNVRRLSLMENQIENLSEVP--TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
            ++++L ++++QI+ +          L  + L +N  L  +    F  +  L  ++L  
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHH 288

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 29/130 (22%), Positives = 43/130 (33%), Gaps = 7/130 (5%)

Query: 55  NVRRLSLMENQIENL--SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
           +   L    N +  +  +       L  L L     +  I    FQS  RL+ L L+   
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTA-N 91

Query: 113 RLYSFPLGI-SKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLIS 170
            L        S   +L+HL    TGI+ +    L+    L  L L     ++ I      
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGF 150

Query: 171 SFSSLHVLRI 180
               L VL  
Sbjct: 151 PTEKLKVLDF 160

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 11/133 (8%)

Query: 54  KNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDS-GFFQSMPRLNVLNLSG 110
            +++ L+L  N+  +L       CP L  L L     L+  D+   FQ++  L VLNLS 
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 111 AIRLYSFPLGI-SKLISLQHLDLSNTGIAELPKE----LNALVNLTCLNLEETWRLTVIP 165
              L      +   L +LQHL+L      +   +    L  L  L  L L     L+ I 
Sbjct: 435 -SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSID 492

Query: 166 RRLISSFSSLHVL 178
           +   +S   ++ +
Sbjct: 493 QHAFTSLKMMNHV 505

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 8/128 (6%)

Query: 58  RLSLMENQIENLSEVP--TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNV--LNLSGAIR 113
                +N +     +   T   L      +      I    F+ +  ++V  +NL     
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM-DDEDISPAVFEGLCEMSVESINLQK-HY 265

Query: 114 LYSFPLGI-SKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSF 172
            ++           LQ LDL+ T ++ELP  L  L  L  L L    +   + +   S+F
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNF 324

Query: 173 SSLHVLRI 180
            SL  L I
Sbjct: 325 PSLTHLSI 332

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 54  KNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNN--APLRRIDSGFFQSMPRLNVLNLS 109
             ++ L+L  + ++  SE      P L+ L L  N         +   Q++ RL +L LS
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 110 GAIRLYSFPLGI-SKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRL 168
               L S      + L  + H+DLS+  +     E  + +    LNL     +++I   L
Sbjct: 485 F-CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASN-HISIILPSL 542

Query: 169 ISSFSSLHVLRI 180
           +   S    + +
Sbjct: 543 LPILSQQRTINL 554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 54  KNVRRLSLMENQIENLSEVP--TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
           K ++ L  ++  I ++  +P      L +L+L +N  +  I         +L VL+    
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQN- 162

Query: 112 IRLYSFPLG-ISKLISLQH--LDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRL 168
             ++      +S L    +  L+L+   IA +            LN   T  L VI + L
Sbjct: 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

Query: 169 I-SSFSSLHVLRI 180
             S+  SL +   
Sbjct: 223 KNSTIQSLWLGTF 235

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 10/93 (10%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 45  ETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPR 102
           +  +  +    +  L L    + ++ +    +   +  + L++N  L          +  
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKG 525

Query: 103 LNVLNLSGAIRLYSFPLGI-SKLISLQHLDLSN 134
           +  LNL+    +      +   L   + ++L  
Sbjct: 526 I-YLNLAS-NHISIILPSLLPILSQQRTINLRQ 556

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 7/133 (5%)

Query: 55  NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNA-PLRRIDSGFFQSMPRLNVLNLSGA 111
           +  RL L  N++++L          L  L L++N    +   S        L  L+LS  
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF- 87

Query: 112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKE--LNALVNLTCLNLEETWRLTVIPRRLI 169
             + +       L  L+HLD  ++ + ++ +     +L NL  L++  T    V    + 
Sbjct: 88  NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIF 146

Query: 170 SSFSSLHVLRIFG 182
           +  SSL VL++ G
Sbjct: 147 NGLSSLEVLKMAG 159

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 7/134 (5%)

Query: 54  KNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
           +N+  L +                  L  L +  N+         F  +  L  L+LS  
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 112 IRLYSFPLGI-SKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLI 169
            +L        + L SLQ L++S+     L       L +L  L+      +    ++ +
Sbjct: 186 -QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQEL 243

Query: 170 SSF-SSLHVLRIFG 182
             F SSL  L +  
Sbjct: 244 QHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 68  NLSEVPTC--PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG-AIRLYSFPLGI-SK 123
            L+ VPT        L L +N  L+ +  G F  + +L  L+LS   +            
Sbjct: 18  GLTSVPTGIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76

Query: 124 LISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRI 180
             SL++LDLS  G+  +      L  L  L+ + +  L  +     S F SL  L  
Sbjct: 77  TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEF--SVFLSLRNLIY 130

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 29/175 (16%)

Query: 54  KNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRI-DSGFFQSMPRLNVLNLSGA 111
            +++ L L  N +  +S        L  L   ++  L+++ +   F S+  L  L++S  
Sbjct: 78  TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISH- 135

Query: 112 IRLYSFPLGI-SKLISLQHLDLS-NTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRL 168
                   GI + L SL+ L ++ N+       +    L NLT L+L +  +L  +    
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA 194

Query: 169 ISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRL 223
            +S SSL VL +  +                        SLD      L  L  L
Sbjct: 195 FNSLSSLQVLNMSHN---------------NF------FSLDTFPYKCLNSLQVL 228

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 5/141 (3%)

Query: 42  GLSETPDVRKWEKNVRRLSLMENQIENL-SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSM 100
             ++     +   N++ L L    I +L + +     L++L + N+ PL  +       +
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHH-L 228

Query: 101 PRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN-TGIAELPKELNALVNLTCLNLEETW 159
           P+L  L+L G   L ++P        L+ L L + + +  LP +++ L  L  L+L    
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

Query: 160 RLTVIPRRLISSFSSLHVLRI 180
            L+ +P  LI+   +  ++ +
Sbjct: 289 NLSRLP-SLIAQLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.0 bits (167), Expect = 5e-13
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 54  KNVRRLSLMENQIENL-SEVPTCPYLRTLFLNNNAPLRRI--------DSGFFQSMPRLN 104
             +  L+L  N +  L + + +   LR L +     L  +         SG  Q +  L 
Sbjct: 127 AGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 105 VLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVI 164
            L L     + S P  I+ L +L+ L + N+ ++ L   ++ L  L  L+L     L   
Sbjct: 187 SLRLEW-TGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245

Query: 165 PRRLISSFSSLHVLRIFG 182
           P       + L  L +  
Sbjct: 246 PPI-FGGRAPLKRLILKD 262

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 3/119 (2%)

Query: 54  KNVRRLSLMENQIENL-SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
           +N++ L +  + +  L   +   P L  L L     LR     F      L  L L    
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCS 264

Query: 113 RLYSFPLGISKLISLQHLDLS-NTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLIS 170
            L + PL I +L  L+ LDL     ++ LP  +  L     + +    +  +   R ++
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.1 bits (162), Expect = 3e-12
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 9/118 (7%)

Query: 54  KNVRRLSLMENQIENLSEVP------TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN 107
            N     +       L          T P    L L +  PL +     F+ +  L  + 
Sbjct: 53  ANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFR-LSHLQHMT 110

Query: 108 LSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIP 165
           +  A  L   P  + +   L+ L L+   +  LP  + +L  L  L++     LT +P
Sbjct: 111 IDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP 167

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 51/311 (16%), Positives = 91/311 (29%), Gaps = 65/311 (20%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQ-SMPRLNVLNLSGAI 112
              +R    +    + +          +       L+         + P    L L    
Sbjct: 33  SQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV- 91

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSF 172
            L  FP    +L  LQH+ +   G+ ELP  +     L  L L     L  +P   I+S 
Sbjct: 92  PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASL 149

Query: 173 SSLHVLRIFGSGYSYSDGMIGNGEFEQLCGF--RRSKSLDVSALADLKRL----NRLK-- 224
           + L  L I               E  +L         S +   L +L+ L      ++  
Sbjct: 150 NRLRELSIRA-----------CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198

Query: 225 ---IAECYGLAELKMDY---KSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLI-FAPNL 277
              IA    L  LK+      ++            L++  +  C  L++   +      L
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGPAIHH---LPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 278 KSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMK 337
           K + +  C  L  +    P  +   L                             L+++ 
Sbjct: 256 KRLILKDCSNLLTL----PLDI-HRL---------------------------TQLEKLD 283

Query: 338 VIHCLKLKKLP 348
           +  C+ L +LP
Sbjct: 284 LRGCVNLSRLP 294

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 54  KNVRRLSLMENQIENL--SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
            N+  L+L  NQ+  L  +       L +L +  N  + +++    Q +P L VLNL   
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQH- 82

Query: 112 IRLYSFPLG-ISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLI 169
             L        +   +L  L L +  I ++         NL  L+L     L+       
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQ 141

Query: 170 SSFSSLHVL 178
               +L  L
Sbjct: 142 VQLENLQEL 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 33/183 (18%), Positives = 59/183 (32%), Gaps = 17/183 (9%)

Query: 57  RRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRL 114
             L+L +N+I  +         +L  L L  N   + +    ++ +  +  + LS    L
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 115 YSFPLGISKLISLQHLDLSN---TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISS 171
                  + + SLQ L L       +   P     L NLT L+L     +  I   ++  
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEG 502

Query: 172 FSSLHVLRIFGSGYSY-SDGMIGNGEFEQLCGFRRSKSLDVS----------ALADLKRL 220
              L +L +  +  +         G    L G      L++              DL  L
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562

Query: 221 NRL 223
             +
Sbjct: 563 KII 565

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 54  KNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
             ++ L+L  N++  LS+     C  L  L L +N  +++I +  F     L  L+LS  
Sbjct: 73  PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSH- 130

Query: 112 IRLYSFPLG-ISKLISLQHLDLSNTGIAELPKELNA---LVNLTCLNLEETWRLTVIPRR 167
             L S  LG   +L +LQ L LSN  I  L  E        +L  L L    ++      
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPG 189

Query: 168 LISSFSSLHVLRI 180
              +   L  L +
Sbjct: 190 CFHAIGRLFGLFL 202

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 14/141 (9%)

Query: 54  KNVRRLSLMENQIENLSEVP--TCPYLRTLFLNNN--------APLRRIDSGFFQSMPRL 103
             +    L  N I++L          +R L L  +        A L +ID   FQ +  L
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 104 NVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETW---- 159
             LN+             + LI+L++L LSN+  +         V+L    L        
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 160 RLTVIPRRLISSFSSLHVLRI 180
           +++ I     S    L VL +
Sbjct: 392 KISKIESDAFSWLGHLEVLDL 412

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 15/115 (13%)

Query: 54  KNVRRLSLMENQIENLSEVPT----------CPYLRTLFLNNNAPLRRIDSGFFQSMPRL 103
           + +  L L  N +  L +               +L  L L +N     I    F+ +  L
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFEL 562

Query: 104 NVLNLSGAIRLYSFPLGI-SKLISLQHLDLSNTGIAELPKEL--NALVNLTCLNL 155
            +++L     L + P  + +  +SL+ L+L    I  + K++   A  NLT L++
Sbjct: 563 KIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 55  NVRRLSLMENQIENLSEVPT----CPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
            +  + L +N I+ +   P        LR + L+NN  +  +    FQ +  LN L L G
Sbjct: 33  TITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYG 89

Query: 111 AIRLYSFPLGI-SKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETWRLTVIPRRL 168
             ++   P  +   L SLQ L L+   I  L  +    L NL  L+L +  +L  I +  
Sbjct: 90  N-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGT 147

Query: 169 ISSFSSLHVLRIFG 182
            S   ++  + +  
Sbjct: 148 FSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 54  KNVRRLSLMENQIENLSEVPT-----CPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNL 108
           +++  L L  N+I  L   P         L+ L LN N  +  +    FQ +  LN+L+L
Sbjct: 80  RSLNSLVLYGNKITEL---PKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSL 135

Query: 109 SGAIRLYSFPLGI-SKLISLQHLDLSN 134
               +L +   G  S L ++Q + L+ 
Sbjct: 136 YDN-KLQTIAKGTFSPLRAIQTMHLAQ 161

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 12/137 (8%)

Query: 54  KNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
           + +  L L  N+I+ +          L  L L +N  +R I++G    +P L  L+L   
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN 251

Query: 112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKE-------LNALVNLTCLNLEE-TWRLTV 163
            +L   P G+  L  LQ + L    I ++                   ++L         
Sbjct: 252 -KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310

Query: 164 IPRRLISSFSSLHVLRI 180
           +        +    ++ 
Sbjct: 311 VQPATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 13/154 (8%)

Query: 55  NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRL 114
            +  L + E ++  + +      L  L L++N  ++ I+        +L  L L    ++
Sbjct: 173 KLNYLRISEAKLTGIPK-DLPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHN-QI 229

Query: 115 YSFPLGI-SKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPR------R 167
                G  S L +L+ L L N  ++ +P  L  L  L  + L     +T +         
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVG 288

Query: 168 LISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLC 201
                +  + + +F +   Y +  +    F  + 
Sbjct: 289 FGVKRAYYNGISLFNNPVPYWE--VQPATFRCVT 320

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.0 bits (151), Expect = 7e-11
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 54  KNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
            +   L L  N I  L +       +L  L L NN  + +I    F  + +L  L +S  
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN 112

Query: 112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNL 155
             L   P  +    SL  L + +  I ++PK   + L N+ C+ +
Sbjct: 113 -HLVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 16/139 (11%)

Query: 68  NLSEVPTC--PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG----AIRLYSFPLGI 121
            L  VP    P    L L NN  +  +    F+ +  L  L L       I   +F    
Sbjct: 44  GLKAVPKEISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAF---- 98

Query: 122 SKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIF 181
           S L  LQ L +S   + E+P  L    +L  L + +  R+  +P+ + S   +++ + + 
Sbjct: 99  SPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEM- 154

Query: 182 GSGYSYSDGMIGNGEFEQL 200
             G    +     G F+ L
Sbjct: 155 -GGNPLENSGFEPGAFDGL 172

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 10/90 (11%)

Query: 54  KNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSM------PRLNVL 106
             +R L L  N++  +    P    L+ ++L+ N  + ++    F  +         N +
Sbjct: 241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGI 299

Query: 107 NLSG-AIRLYSFPLGI-SKLISLQHLDLSN 134
           +L    +  +         +     +   N
Sbjct: 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.1 bits (163), Expect = 3e-12
 Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 11/128 (8%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG-AI 112
            NV +L L  N++ ++  +     L  LFL+ N  ++ + S   + + +L  L+L    I
Sbjct: 65  PNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN-KIKDLSS--LKDLKKLKSLSLEHNGI 121

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSF 172
              +   G+  L  L+ L L N  I ++   L+ L  L  L+LE+  +++ I    ++  
Sbjct: 122 SDIN---GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDN-QISDIV--PLAGL 174

Query: 173 SSLHVLRI 180
           + L  L +
Sbjct: 175 TKLQNLYL 182

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.1 bits (163), Expect = 3e-12
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 6/104 (5%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
           K ++ LSL  N I +++ +   P L +L+L NN  +  I       + +L+ L+L    +
Sbjct: 109 KKLKSLSLEHNGISDINGLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDN-Q 164

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEE 157
           +      ++ L  LQ+L LS   I++L + L  L NL  L L  
Sbjct: 165 ISDIV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFS 206

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.2 bits (153), Expect = 4e-11
 Identities = 47/283 (16%), Positives = 95/283 (33%), Gaps = 40/283 (14%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG-AI 112
               + +L +  + +         +  +  NN+  ++ +     Q +P +  L L+G  +
Sbjct: 21  AETIKDNLKKKSVTDAVTQNELNSIDQIIANNS-DIKSVQ--GIQYLPNVTKLFLNGNKL 77

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSF 172
                   ++ L +L  L L    I +L   L  L  L  L+LE    ++ I    +   
Sbjct: 78  TDIK---PLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHN-GISDING--LVHL 130

Query: 173 SSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRL-----KIAE 227
             L  L +  +  +    +    + + L     ++  D+  LA L +L  L      I++
Sbjct: 131 PQLESLYLGNNKITDITVLSRLTKLDTLS-LEDNQISDIVPLAGLTKLQNLYLSKNHISD 189

Query: 228 CYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYC----KELKDLTFLIFAPNLKSIEVD 283
              LA LK                 +L   ++       K +   + L+    +K+   D
Sbjct: 190 LRALAGLK-----------------NLDVLELFSQECLNKPINHQSNLVVPNTVKNT--D 230

Query: 284 SCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRK 326
                 EI+SD  +    N+           S++        K
Sbjct: 231 GSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGK 273

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.5 bits (133), Expect = 2e-08
 Identities = 43/232 (18%), Positives = 85/232 (36%), Gaps = 33/232 (14%)

Query: 59  LSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP 118
              +   I+ +             L         D+     +  ++ +  + +  + S  
Sbjct: 4   TITVSTPIKQIFPDDAFAETIKDNLKKK---SVTDAVTQNELNSIDQIIANNS-DIKSVQ 59

Query: 119 LGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVL 178
            GI  L ++  L L+   + ++ K L  L NL  L L+E  ++  +    +     L  L
Sbjct: 60  -GIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDEN-KIKDLSS--LKDLKKLKSL 114

Query: 179 RIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRL-----KIAECYGLAE 233
            +  +G S  +G++   + E L     +K  D++ L+ L +L+ L     +I++   LA 
Sbjct: 115 SLEHNGISDINGLVHLPQLESLY-LGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG 173

Query: 234 LKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSC 285
           L                   L+   +S    + DL  L    NL  +E+ S 
Sbjct: 174 LT-----------------KLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQ 207

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.3 bits (161), Expect = 5e-12
 Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 10/141 (7%)

Query: 43  LSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPR 102
           L E   ++    +VR L L    +  L  +     +  L L++N  LR +      ++  
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-LRALPPA-LAALRC 487

Query: 103 LNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELP--KELNALVNLTCLNLEETWR 160
           L VL  S    L +   G++ L  LQ L L N  + +    + L +   L  LNL+    
Sbjct: 488 LEVLQASDN-ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-S 544

Query: 161 LTVIP---RRLISSFSSLHVL 178
           L        RL     S+  +
Sbjct: 545 LCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNN-APLRRIDSGFFQSMPRLNVLNLSGAI 112
           + +  L   +  ++  S +     +R  +L++  +     +S        + VL+L+   
Sbjct: 393 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH-K 451

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSF 172
            L      + +L+ + HLDLS+  +  LP  L AL  L  L   +   L  +    +++ 
Sbjct: 452 DLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG--VANL 507

Query: 173 SSLHVL 178
             L  L
Sbjct: 508 PRLQEL 513

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 13/131 (9%)

Query: 55  NVRRLSLMENQIENLSEVPT----CPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
           + + L L  N + +L          P L+ L L+    ++ I+ G +QS+  L+ L L+G
Sbjct: 29  STKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG 85

Query: 111 AIRLYSFPLGI-SKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETWRLTVIPRRL 168
              + S  LG  S L SLQ L    T +A L       L  L  LN+     +       
Sbjct: 86  N-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLP- 142

Query: 169 ISSFSSLHVLR 179
              FS+L  L 
Sbjct: 143 -EYFSNLTNLE 152

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 54  KNVRRLSLMENQIENLSEVPTC---PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
           K ++ L++  N I++            L  L L++N  ++ I     + + ++ +LNLS 
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL 182

Query: 111 AI---RLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNL 155
            +    +     G  K I L+ L L    +  +P    + L +L  + L
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 11/128 (8%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG-AI 112
            NV +L L  N++ ++  +     L  LFL+ N  ++ + S   + + +L  L+L    I
Sbjct: 68  PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKSLSLEHNGI 124

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSF 172
              +   G+  L  L+ L L N  I ++   L+ L  L  L+LE+  +++ I    ++  
Sbjct: 125 SDIN---GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIV--PLAGL 177

Query: 173 SSLHVLRI 180
           + L  L +
Sbjct: 178 TKLQNLYL 185

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
           K ++ LSL  N I +++ +   P L +L+L NN  +  I       + +L+ L+L    +
Sbjct: 112 KKLKSLSLEHNGISDINGLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDN-Q 167

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLE 156
           +      ++ L  LQ+L LS   I++L + L  L NL  L L 
Sbjct: 168 ISDIV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELF 208

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 11/128 (8%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG-AI 112
            ++ ++    + I+++  +   P +  LFLN N  L  I      ++  L  L L    +
Sbjct: 46  NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKV 102

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSF 172
           +  S    +  L  L+ L L + GI+++   L  L  L  L L    ++T I    +S  
Sbjct: 103 KDLS---SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRL 155

Query: 173 SSLHVLRI 180
           + L  L +
Sbjct: 156 TKLDTLSL 163

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 9/113 (7%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG-AI 112
               + +L +  + +         +  +  NN+  ++ +     Q +P +  L L+G  +
Sbjct: 24  AETIKDNLKKKSVTDAVTQNELNSIDQIIANNS-DIKSVQ--GIQYLPNVTKLFLNGNKL 80

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIP 165
                   ++ L +L  L L    + +L   L  L  L  L+LE    ++ I 
Sbjct: 81  TDIK---PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHN-GISDIN 128

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 43/232 (18%), Positives = 85/232 (36%), Gaps = 33/232 (14%)

Query: 59  LSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP 118
              +   I+ +             L         D+     +  ++ +  + +  + S  
Sbjct: 7   TITVPTPIKQIFSDDAFAETIKDNLKKK---SVTDAVTQNELNSIDQIIANNS-DIKSVQ 62

Query: 119 LGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVL 178
            GI  L ++  L L+   + ++ K L  L NL  L L+E  ++  +    +     L  L
Sbjct: 63  -GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKSL 117

Query: 179 RIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRL-----KIAECYGLAE 233
            +  +G S  +G++   + E L     +K  D++ L+ L +L+ L     +I++   LA 
Sbjct: 118 SLEHNGISDINGLVHLPQLESLY-LGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG 176

Query: 234 LKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSC 285
           L                   L+   +S    + DL  L    NL  +E+ S 
Sbjct: 177 LT-----------------KLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQ 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             +  LSL +NQI ++  +     L+ L+L+ N  +  + +     +  L+VL L     
Sbjct: 156 TKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFSQEC 212

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           L       S L+    +  ++  +   P+ ++   +    N+   W L      +   F 
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSLVT-PEIISDDGDYEKPNV--KWHLPEFTNEVSFIFY 269

Query: 174 S 174
            
Sbjct: 270 Q 270

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 7/132 (5%)

Query: 55  NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
              RL L  N I  ++    P    L+ L L +      ID   F+++P L +L+L  + 
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS- 83

Query: 113 RLYSFPLGI-SKLISLQHLDLSNTGIAEL---PKELNALVNLTCLNLEETWRLTVIPRRL 168
           ++Y         L  L  L L   G+++          L  LT L+L +    ++     
Sbjct: 84  KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 169 ISSFSSLHVLRI 180
               +SL  +  
Sbjct: 144 FGKLNSLKSIDF 155

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 46/293 (15%), Positives = 94/293 (32%), Gaps = 43/293 (14%)

Query: 54  KNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNA-PLRRIDSGFFQSMPRLNVLNLSG 110
            N+R L L  ++I  L         +L  L L         +  G+F+++  L  L+LS 
Sbjct: 73  PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 111 -AIRLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNAL--VNLTCLNLEETWRLTVIPR 166
             IR         KL SL+ +D S+  I  + +  L  L    L+  +L      + +  
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192

Query: 167 RLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIA 226
                 +    + +               E   + G   +  +  +    + +     + 
Sbjct: 193 DWGKCMNPFRNMVL---------------EILDVSGNGWTVDITGNFSNAISKSQAFSLI 237

Query: 227 ECYGLAELKMDY---KSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFA--PNLKSIE 281
             + +      +   K   QNT       S++   +S+   +  L   +F    +LK + 
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLN 296

Query: 282 VDSCYALEEIVSDVPEVMMGNL----------NPFAQFHFLCFSYLPNLKSIY 324
           +         ++ + +     L          N   + +   F  LP +  I 
Sbjct: 297 LAYNK-----INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 39/254 (15%), Positives = 91/254 (35%), Gaps = 31/254 (12%)

Query: 54  KNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
           K+++ L+L  N+I  +++        L+ L L+ N  L  + S  F  +P++  ++L   
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN 348

Query: 112 IRLYSFPLGI-SKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLIS 170
             +          L  LQ LDL +  +      ++ + ++  + L    +L  +P+  ++
Sbjct: 349 -HIAIIQDQTFKFLEKLQTLDLRDNAL----TTIHFIPSIPDIFLSG-NKLVTLPKINLT 402

Query: 171 S---------FSSLHVLRIFGSGYS-----YSDGMIGNGEFEQLCGFRRS-KSLDVS--- 212
           +           +L +L              +     +   +Q      S + L +    
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 213 -ALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFV-FHSLKKFQISYCKELKDLTF 270
             LA    L          L  L +++  +       F    +L+   ++  + L  L+ 
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVLSH 521

Query: 271 LIFAPNLKSIEVDS 284
                NL+ +++  
Sbjct: 522 NDLPANLEILDISR 535

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 54  KNVRRLSLMENQIENLSE---VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
             V+ L L  N+I+ ++      +   L  L L  N  +  +         +L  L+LS 
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVV--FAKLKTLDLSS 200

Query: 111 AIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLE 156
             +L            +  + L N  +  + K L    NL   +L 
Sbjct: 201 N-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 15/130 (11%)

Query: 54  KNVRRLSLMENQIENL--SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG- 110
            NV+ L L  N +  +  +++     L  L L++N  L        +S+  L  L+L+  
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNN 90

Query: 111 AIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLIS 170
            ++       +    S++ L  +N  I+ +    +       + L    ++T++      
Sbjct: 91  YVQE------LLVGPSIETLHAANNNISRVS--CSRGQGKKNIYLANN-KITMLRDLDEG 141

Query: 171 SFSSLHVLRI 180
             S +  L +
Sbjct: 142 CRSRVQYLDL 151

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 12/127 (9%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             +  L+L  N +    ++ +   LRTL LNNN  ++ +  G     P +  L+ +    
Sbjct: 58  TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-VQELLVG-----PSIETLHAAN-NN 110

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRR-LISS 171
           +             +++ L+N  I  L   +      +  L+L+    +  +    L +S
Sbjct: 111 ISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAAS 167

Query: 172 FSSLHVL 178
             +L  L
Sbjct: 168 SDTLEHL 174

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 78  LRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLG-ISKLISLQHLDLSNTG 136
            +   + +++ L++  +   QS   +  L+LSG   L       ++    L+ L+LS+  
Sbjct: 12  YKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNV 69

Query: 137 IAELPKELNALVNLTCLNL 155
           + E   +L +L  L  L+L
Sbjct: 70  LYETL-DLESLSTLRTLDL 87

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 96  FFQSMPRLNVLNLSGAIRLYSFPLGI-SKLISLQHLDLSNTGIAELP-KELNALVNLTCL 153
             Q+  R  +  ++ +  L      +     +++ LDLS   ++++   +L     L  L
Sbjct: 5   IKQNGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 154 NLEETWRLTVIPRRLISSFSSLHVLRI 180
           NL     L       + S S+L  L +
Sbjct: 64  NLSSN-VLYETLD--LESLSTLRTLDL 87

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 35/172 (20%), Positives = 75/172 (43%), Gaps = 10/172 (5%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
            N+  L L +NQI +L+ +     +  L L+ N PL+ + +     +  +  L+L+   +
Sbjct: 63  NNLIGLELKDNQITDLAPLKNLTKITELELSGN-PLKNVSA--IAGLQSIKTLDLTS-TQ 118

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           +      ++ L +LQ L L    I  +   L  L NL  L++    +++ +    +++ S
Sbjct: 119 ITDVT-PLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNA-QVSDLT--PLANLS 173

Query: 174 SLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKI 225
            L  L+   +  S    +       ++   + ++  DVS LA+   L  + +
Sbjct: 174 KLTTLKADDNKISDISPLASLPNLIEV-HLKNNQISDVSPLANTSNLFIVTL 224

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 9/127 (7%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             +  LS     +  +  V     L  L L +N  +  +     +++ ++  L LSG   
Sbjct: 41  DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGN-P 96

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           L +    I+ L S++ LDL++T I ++   L  L NL  L L+   ++T I    ++  +
Sbjct: 97  LKNVS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLN-QITNIS--PLAGLT 151

Query: 174 SLHVLRI 180
           +L  L I
Sbjct: 152 NLQYLSI 158

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
            N++ L L  NQI N+S +     L+ L + N   +  +      ++ +L  L      +
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDN-K 184

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLE 156
           +      ++ L +L  + L N  I+++   L    NL  + L 
Sbjct: 185 ISDIS-PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLT 225

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
            N++ LS+   Q+ +L+ +     L TL  ++N  +  I      S+P L  ++L    +
Sbjct: 151 TNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK-ISDISP--LASLPNLIEVHLKNN-Q 206

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNL 155
           +      ++   +L  + L+N  I   P   N   NL   N+
Sbjct: 207 ISDVS-PLANTSNLFIVTLTNQTITNQPVFYNN--NLVVPNV 245

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 9/125 (7%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
            N  +++  ++ + +         + TL       +  I+    Q +  L  L L    +
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGT-GVTTIE--GVQYLNNLIGLELKD-NQ 74

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           +      +  L  +  L+LS   +  +   +  L ++  L+L  T ++T +    ++  S
Sbjct: 75  ITDLA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTST-QITDVTP--LAGLS 129

Query: 174 SLHVL 178
           +L VL
Sbjct: 130 NLQVL 134

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 49/234 (20%)

Query: 64  NQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISK 123
             I  +   P       +    +      D+     +  +  L+  G   + +   G+  
Sbjct: 7   TAINVIFPDPALANAIKIAAGKS---NVTDTVTQADLDGITTLSAFGT-GVTTIE-GVQY 61

Query: 124 LISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGS 183
           L +L  L+L +  I +L   L  L  +T L L     L  +    I+   S+  L +  +
Sbjct: 62  LNNLIGLELKDNQITDLA-PLKNLTKITELELSGN-PLKNVSA--IAGLQSIKTLDLTST 117

Query: 184 GYSYSDGMIGNGEFEQLCGFRRSKSL--------DVSALADLKRLNRL-----KIAECYG 230
             +         +   L G    + L        ++S LA L  L  L     ++++   
Sbjct: 118 QIT---------DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP 168

Query: 231 LAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDS 284
           LA L                   L   +    K + D++ L   PNL  + + +
Sbjct: 169 LANLS-----------------KLTTLKADDNK-ISDISPLASLPNLIEVHLKN 204

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.0 bits (153), Expect = 5e-11
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 12/124 (9%)

Query: 55  NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRL 114
            + +L    N++ +L  +P+   L+ L ++ N  L  +          L  L +SG  RL
Sbjct: 202 ELYKLWAYNNRLTSLPALPSG--LKELIVSGN-RLTSLPV----LPSELKELMVSGN-RL 253

Query: 115 YSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSS 174
            S P+  S    L  L +    +  LP+ L  L + T +NLE    L+    + +   +S
Sbjct: 254 TSLPMLPS---GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN-PLSERTLQALREITS 309

Query: 175 LHVL 178
               
Sbjct: 310 APGY 313

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 16/125 (12%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             + +L +  NQ+ +L  +P  P L+ L +++N  L  + +   +    L  L      +
Sbjct: 121 SGLCKLWIFGNQLTSLPVLP--PGLQELSVSDN-QLASLPALPSE----LCKLWAYN-NQ 172

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           L S P+  S    LQ L +S+  +A LP   + L  L   N     RLT +P  L S   
Sbjct: 173 LTSLPMLPS---GLQELSVSDNQLASLPTLPSELYKLWAYNN----RLTSLP-ALPSGLK 224

Query: 174 SLHVL 178
            L V 
Sbjct: 225 ELIVS 229

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 7e-09
 Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 25/142 (17%)

Query: 52  WEKNVRRLSLMENQIENL-SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
                  L++ E+ +  L   +P    + TL + +N  L  + +      P L  L +SG
Sbjct: 38  LNNGNAVLNVGESGLTTLPDCLPAH--ITTLVIPDNN-LTSLPALP----PELRTLEVSG 90

Query: 111 AIRLYSFPLGISKLISLQHLDLSNTGIAELPKEL--------------NALVNLTCLNLE 156
             +L S P+    L+ L       T +  LP  L                   L  L++ 
Sbjct: 91  N-QLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVS 149

Query: 157 ETWRLTVIPRRLISSFSSLHVL 178
           +  +L  +P  L S    L   
Sbjct: 150 DN-QLASLP-ALPSELCKLWAY 169

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 12/123 (9%)

Query: 50  RKWEKNVRRLSLMENQIENLSEVPTC--PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN 107
             W +          +   + ++  C       L +  +  L  +          +  L 
Sbjct: 13  SAWRRAAP-AEESRGRAAVVQKMRACLNNGNAVLNVGES-GLTTLPDCLPAH---ITTLV 67

Query: 108 LSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRR 167
           +     L S P    +L   + L++S   +  LP     L+ L+  +   T  L  +P  
Sbjct: 68  IPD-NNLTSLPALPPEL---RTLEVSGNQLTSLPVLPPGLLELSIFSNPLT-HLPALPSG 122

Query: 168 LIS 170
           L  
Sbjct: 123 LCK 125

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 6e-11
 Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 8/129 (6%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRI-DSGFFQSMPRLNVLNLSGAI 112
            ++  ++L    + +L+ +     ++ L +NN        +      +  L  L + G  
Sbjct: 44  NSLTYITLANINVTDLTGIEYAHNIKDLTINNI----HATNYNPISGLSNLERLRIMGKD 99

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAEL-PKELNALVNLTCLNLEETWRLTVIPRRLISS 171
                   +S L SL  LD+S++   +    ++N L  +  ++L     +T I    + +
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKT 157

Query: 172 FSSLHVLRI 180
              L  L I
Sbjct: 158 LPELKSLNI 166

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 9e-11
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
            N++ L++      N + +     L  L +     +          +  L +L++S +  
Sbjct: 66  HNIKDLTINNIHATNYNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 114 LYSFPLGISKLISLQHLDLS-NTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSF 172
             S    I+ L  +  +DLS N  I ++   L  L  L  LN++    +     R I  F
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFD-GVHDY--RGIEDF 180

Query: 173 SSLHVLRIFG 182
             L+ L  F 
Sbjct: 181 PKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 54  KNVRRLSLMENQIEN--LSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG- 110
            ++  L +  +  ++  L+++ T P + ++ L+ N  +  I     +++P L  LN+   
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFD 169

Query: 111 AIRLYSFPLGISKLISLQHLDLSNTGIAEL 140
            +  Y    GI     L  L   +  I   
Sbjct: 170 GVHDYR---GIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 35/168 (20%)

Query: 118 PLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHV 177
            +  +++ SL ++ L+N  + +L   +    N+  L +      T      IS  S+L  
Sbjct: 37  NITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNI-HATNYN--PISGLSNLER 92

Query: 178 LRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMD 237
           LRI G         + + +   L G      LD+S        +    +    +  L   
Sbjct: 93  LRIMGKD-------VTSDKIPNLSGLTSLTLLDISH-------SAHDDSILTKINTLP-- 136

Query: 238 YKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSC 285
                           +    +SY   + D+  L   P LKS+ +   
Sbjct: 137 ---------------KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.6 bits (152), Expect = 6e-11
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 54  KNVRRLSLMENQIENLSE---VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
             V+ L L  N+I+ ++      +   L  L L  N  +  +         +L  L+LS 
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVV--FAKLKTLDLSS 200

Query: 111 AIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLE 156
             +L            +  + L N  +  + K L    NL   +L 
Sbjct: 201 N-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 15/128 (11%)

Query: 54  KNVRRLSLMENQIENL--SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG- 110
            NV+ L L  N +  +  +++     L  L L++N  L        +S+  L  L+L+  
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNN 90

Query: 111 AIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLIS 170
            ++       +    S++ L  +N  I+ +    +       + L    ++T++      
Sbjct: 91  YVQ------ELLVGPSIETLHAANNNISRVS--CSRGQGKKNIYLANN-KITMLRDLDEG 141

Query: 171 SFSSLHVL 178
             S +  L
Sbjct: 142 CRSRVQYL 149

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 12/127 (9%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             +  L+L  N +    ++ +   LRTL LNNN  ++ +  G     P +  L+ +    
Sbjct: 58  TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-VQELLVG-----PSIETLHAAN-NN 110

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRR-LISS 171
           +             +++ L+N  I  L   +      +  L+L+    +  +    L +S
Sbjct: 111 ISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAAS 167

Query: 172 FSSLHVL 178
             +L  L
Sbjct: 168 SDTLEHL 174

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 25/122 (20%)

Query: 78  LRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLG-ISKLISLQHLDLSNTG 136
            +   + +++ L++  +   QS   +  L+LSG   L       ++    L+ L+LS+  
Sbjct: 12  YKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNV 69

Query: 137 IAELP------------------KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVL 178
           + E                    +EL    ++  L+      ++ +     S       +
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN-NISRVS---CSRGQGKKNI 125

Query: 179 RI 180
            +
Sbjct: 126 YL 127

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.1 bits (149), Expect = 8e-11
 Identities = 34/128 (26%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 55  NVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
           + ++L L  N++ +L          LR L+LN+N  L+ + +G F+ +  L  L ++   
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTD-N 95

Query: 113 RLYSFPLGI-SKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETWRLTVIPRRLIS 170
           +L + P+G+  +L++L  L L    +  LP  + ++L  LT L+L     L  +P+ +  
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFD 154

Query: 171 SFSSLHVL 178
             +SL  L
Sbjct: 155 KLTSLKEL 162

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 7/131 (5%)

Query: 55  NVRRLSLMENQIENLSE-VPTC-PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
            +R L L +N+++ L   +      L TL++ +N  L+ +  G F  +  L  L L    
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRN- 119

Query: 113 RLYSFPLGI-SKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETWRLTVIPRRLIS 170
           +L S P  +   L  L +L L    +  LPK + + L +L  L L    +L  +P     
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFD 178

Query: 171 SFSSLHVLRIF 181
             + L  L++ 
Sbjct: 179 KLTELKTLKLD 189

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 7/116 (6%)

Query: 68  NLSEVPTC--PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGI-SKL 124
            L+ +P+      + L L +N  L  + S  F  + +L +L L+   +L + P GI  +L
Sbjct: 27  KLTAIPSNIPADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKEL 84

Query: 125 ISLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLR 179
            +L+ L +++  +  LP  + + LVNL  L L+   +L  +P R+  S + L  L 
Sbjct: 85  KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLS 139

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 6/105 (5%)

Query: 55  NVRRLSLMENQIENLSE-VPTC-PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
           N+  L L  NQ+++L   V      L  L L  N  L+ +  G F  +  L  L L    
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN- 167

Query: 113 RLYSFPLGI-SKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNL 155
           +L   P G   KL  L+ L L N  +  +P+   ++L  L  L L
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 9e-11
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 8/127 (6%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
            N+  L+L  NQI ++S +     L  L++  N  +  I +   Q++  L  L L+    
Sbjct: 66  TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNED-N 121

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           +      ++ L  +  L+L           L+ +  L  L + E+ ++  +    I++ +
Sbjct: 122 ISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLT 177

Query: 174 SLHVLRI 180
            L+ L +
Sbjct: 178 DLYSLSL 184

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 23/127 (18%), Positives = 55/127 (43%), Gaps = 8/127 (6%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
           +++ +L +   ++ ++  +     L  L LN N  +  I      ++ +L  L +    +
Sbjct: 44  ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGT-NK 99

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           +      +  L +L+ L L+   I+++   L  L  +  LNL     L+ +    +S+ +
Sbjct: 100 ITDIS-ALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSP--LSNMT 155

Query: 174 SLHVLRI 180
            L+ L +
Sbjct: 156 GLNYLTV 162

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 9/127 (7%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
               R  L +  + ++        +  L +     +  I     + +  L  LNL+G  +
Sbjct: 22  AEGIRAVLQKASVTDVVTQEELESITKLVVAGE-KVASIQG--IEYLTNLEYLNLNGN-Q 77

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           +      +S L+ L +L +    I ++   L  L NL  L L E   ++ I    +++ +
Sbjct: 78  ITDIS-PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDISP--LANLT 132

Query: 174 SLHVLRI 180
            ++ L +
Sbjct: 133 KMYSLNL 139

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             ++ L++  NQI ++S +     L +LFLNNN  L   D      +  L  L LS    
Sbjct: 265 TKLKMLNVGSNQISDISVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQ-NH 322

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAE 139
           +      ++ L  +   D +N  I +
Sbjct: 323 ITDIR-PLASLSKMDSADFANQVIKK 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 12/131 (9%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
            ++  ++   NQ+E L E+   P+L  ++ +NN     +          L  +       
Sbjct: 173 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNN----SLKK-LPDLPLSLESIVAGNN-I 226

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           L   P  +  L  L  +   N  +  LP    +L  L   +      LT +P  L  S +
Sbjct: 227 LEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN----YLTDLP-ELPQSLT 280

Query: 174 SLHVLRIFGSG 184
            L V     SG
Sbjct: 281 FLDVSENIFSG 291

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 13/127 (10%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             +  L +  NQ+E L E+    +L+ + ++NN  L+++        P L  +      +
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLKKLPD----LPPSLEFIAAGN-NQ 184

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           L   P  +  L  L  +   N  + +LP    +L ++   N      L  +P   + +  
Sbjct: 185 LEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN----ILEELPE--LQNLP 237

Query: 174 SLHVLRI 180
            L  +  
Sbjct: 238 FLTTIYA 244

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 27/144 (18%)

Query: 53  EKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQ-------------- 98
           ++    L L    + +L E    P+L +L  + N+ L  +                    
Sbjct: 70  DRQAHELELNNLGLSSLPE--LPPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKAL 126

Query: 99  --SMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLE 156
               P L  L +S   +L   P  +     L+ +D+ N  + +LP    +L  +   N  
Sbjct: 127 SDLPPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN- 183

Query: 157 ETWRLTVIPRRLISSFSSLHVLRI 180
              +L  +P   + +   L  +  
Sbjct: 184 ---QLEELPE--LQNLPFLTAIYA 202

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 18/130 (13%)

Query: 54  KNVRRLSLMENQIENL-SEVPTCPYLRTLFLNNNAPLRRIDSGFFQ------------SM 100
             ++      + +  +  E          +   +   R    G  +              
Sbjct: 11  TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 101 PRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWR 160
            + + L L+  + L S P        L+ L  S   + ELP+   +L +L   N      
Sbjct: 71  RQAHELELNN-LGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLK-A 125

Query: 161 LTVIPRRLIS 170
           L+ +P  L  
Sbjct: 126 LSDLPPLLEY 135

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 12/100 (12%)

Query: 55  NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRL 114
            + RL    N +  + E+P    L+ L +  N PLR         +  L + +      L
Sbjct: 338 RLERLIASFNHLAEVPELPQN--LKQLHVEYN-PLREFPDIPES-VEDLRMNS-----HL 388

Query: 115 YSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLN 154
              P       +L+ L +    + E P    ++ +L   +
Sbjct: 389 AEVPELPQ---NLKQLHVETNPLREFPDIPESVEDLRMNS 425

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 16/122 (13%)

Query: 59  LSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP 118
               E  +  L +         L LNN   L  +        P L  L  S    L   P
Sbjct: 55  GEQREMAVSRLRDCL-DRQAHELELNNL-GLSSLPE----LPPHLESLVASC-NSLTELP 107

Query: 119 LGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVL 178
                L SL   + +   +++LP        L  L +    +L  +P   + + S L ++
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPP------LLEYLGVSNN-QLEKLPE--LQNSSFLKII 158

Query: 179 RI 180
            +
Sbjct: 159 DV 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 11/128 (8%)

Query: 55  NVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
           +   L L EN +   S   +     L  L L+    L ++      ++P L  L+LS   
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHN- 87

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETWRLTVIPRRLISS 171
           +L S PL    L +L  LD+S   +  LP      L  L  L L+    L  +P  L   
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGL--- 143

Query: 172 FSSLHVLR 179
            +    L 
Sbjct: 144 LTPTPKLE 151

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 55  NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRL 114
            + +L+L   ++  L    T P L TL L++N  L+ +     Q++P L VL++S   RL
Sbjct: 56  RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ-LQSLPLL-GQTLPALTVLDVSFN-RL 112

Query: 115 YSFPLGI-SKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETWRLTVIPRRLISSF 172
            S PLG    L  LQ L L    +  LP  L      L  L+L     LT +P  L++  
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGL 171

Query: 173 SSLHVLR 179
            +L  L 
Sbjct: 172 ENLDTLL 178

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 6/114 (5%)

Query: 68  NLSEVPTC--PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLI 125
           NL+ +P         L L+ N  L            RL  LNL  A  L    +    L 
Sbjct: 21  NLTALPPDLPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLP 77

Query: 126 SLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLR 179
            L  LDLS+  +  LP     L  LT L++    RLT +P   +     L  L 
Sbjct: 78  VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELY 130

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 55  NVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
            +  L +  N++ +L    +     L+ L+L  N  L+ +  G     P+L  L+L+   
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN- 158

Query: 113 RLYSFPLGI-SKLISLQHLDLSNTGIAELPKELNALVNLTCLNL 155
            L   P G+ + L +L  L L    +  +PK       L    L
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 55  NVRRLSLMENQIENLSE---VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
            ++ L L  N+++ L      PT P L  L L NN  L  + +G    +  L+ L L   
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPT-PKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN 182

Query: 112 IRLYSFPLGISKLISLQHLDLSN 134
             LY+ P G      L    L  
Sbjct: 183 -SLYTIPKGFFGSHLLPFAFLHG 204

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.3 bits (148), Expect = 1e-10
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 64  NQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGI-S 122
             +++L  +P    L  L++ N   L+ ++    + +  L  L +  +  L         
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFH 77

Query: 123 KLISLQHLDLSNTGIAELPKELNALVNLTCLNLEE 157
               L  L+LS   +  L  +    ++L  L L  
Sbjct: 78  FTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 9/127 (7%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
            N+  L    NQI +++ +     L  L LN N  L+ I +    S+  L  L+L+   +
Sbjct: 199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQ-LKDIGT--LASLTNLTDLDLANN-Q 254

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           + +    +S L  L  L L    I+ +   L  L  LT L L E  +L  I    IS+  
Sbjct: 255 ISNLA-PLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNEN-QLEDIS--PISNLK 309

Query: 174 SLHVLRI 180
           +L  L +
Sbjct: 310 NLTYLTL 316

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 57/306 (18%), Positives = 106/306 (34%), Gaps = 81/306 (26%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             V  L      I+++  V     L  +  +NN  L  I     +++ +L  + ++   +
Sbjct: 46  DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNN-Q 101

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           +      ++ L +L  L L N  I ++   L  L NL  L L     ++ I    +S  +
Sbjct: 102 IADIT-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSN-TISDISA--LSGLT 156

Query: 174 SLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRL-----KIAEC 228
           SL  L              GN            +  D+  LA+L  L RL     K+++ 
Sbjct: 157 SLQQLS------------FGN------------QVTDLKPLANLTTLERLDISSNKVSDI 192

Query: 229 YGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYAL 288
             LA+L                  +L+    +  + + D+T L    NL  + ++     
Sbjct: 193 SVLAKLT-----------------NLESLIATNNQ-ISDITPLGILTNLDELSLNGNQ-- 232

Query: 289 EEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCL-KLKKL 347
              + D+                   + L NL  +    L    +  +  +  L KL +L
Sbjct: 233 ---LKDIGT----------------LASLTNLTDLD---LANNQISNLAPLSGLTKLTEL 270

Query: 348 PLDSNR 353
            L +N+
Sbjct: 271 KLGANQ 276

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 7e-09
 Identities = 51/314 (16%), Positives = 108/314 (34%), Gaps = 75/314 (23%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
            N+ +++   NQ+ +++ +     L  + +NNN  +  I      ++  L  L L    +
Sbjct: 68  NNLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNN-Q 123

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
           +      +  L +L  L+LS+  I+++   L+ L +L  L+        + P   +++ +
Sbjct: 124 ITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSF-GNQVTDLKP---LANLT 177

Query: 174 SLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS--------ALADLKRLNRLKI 225
           +L  L I  +  S         +   L      +SL  +         L  L  L+ L +
Sbjct: 178 TLERLDISSNKVS---------DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 228

Query: 226 AECY-----GLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSI 280
                     LA L                  +L    ++  + + +L  L     L  +
Sbjct: 229 NGNQLKDIGTLASLT-----------------NLTDLDLANNQ-ISNLAPLSGLTKLTEL 270

Query: 281 EVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIH 340
           ++ +       +S++                   + L  L ++    L    L+++  I 
Sbjct: 271 KLGANQ-----ISNISP----------------LAGLTALTNLE---LNENQLEDISPIS 306

Query: 341 CL-KLKKLPLDSNR 353
            L  L  L L  N 
Sbjct: 307 NLKNLTYLTLYFNN 320

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             ++RL    N++ ++S +     +  L   +N  +  +      ++ R+  L L+    
Sbjct: 331 TKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLND-QA 386

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
             + P+     +S+ +   + TG    P  ++   + T  ++  TW L      +  +FS
Sbjct: 387 WTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDI--TWNLPSYTNEVSYTFS 444

Query: 174 SL 175
             
Sbjct: 445 QP 446

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 22/159 (13%)

Query: 43  LSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPR 102
           L +  D+     NV   SL+   IE + +       + L L N     +  +   +S+ R
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC-KFGQFPTLKLKSLKR 329

Query: 103 LNVLNLSGAI---------------------RLYSFPLGISKLISLQHLDLSNTGIAELP 141
           L   +  G                                    SL++LDLS  G+  + 
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389

Query: 142 KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRI 180
                L  L  L+ + +    +    +  S  +L  L I
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 8/131 (6%)

Query: 55  NVRRLSLMENQIENL--SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
           + + L L  N + +L      + P L+ L L+    ++ I+ G +QS+  L+ L L+G  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG-N 86

Query: 113 RLYSFPLG-ISKLISLQHLDLSNTGIAEL-PKELNALVNLTCLNLEETWRLTVIPR-RLI 169
            + S  LG  S L SLQ L    T +A L    +  L  L  LN+     +         
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYF 145

Query: 170 SSFSSLHVLRI 180
           S+ ++L  L +
Sbjct: 146 SNLTNLEHLDL 156

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 5/131 (3%)

Query: 54  KNVRRLSLMENQIENL--SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG- 110
           +N+  L +                  L  L +  N+         F  +  L  L+LS  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 111 AIRLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLI 169
            +     P   + L SLQ L++S+     L       L +L  L+      +T   + L 
Sbjct: 481 QLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 170 SSFSSLHVLRI 180
              SSL  L +
Sbjct: 540 HFPSSLAFLNL 550

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 8e-10
 Identities = 38/279 (13%), Positives = 87/279 (31%), Gaps = 33/279 (11%)

Query: 54  KNVRRLSLMENQIENLSEVP--TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG- 110
            ++++L  +E  + +L   P      L+ L + +N         +F ++  L  L+LS  
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 111 AIRLYSFPLGISKLISLQ----HLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPR 166
            I+   +   +  L  +      LDLS   +  +       + L  L L   +    + +
Sbjct: 160 KIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 167 RLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIA 226
             I   + L V R+                  +       +  D SAL  L  L   +  
Sbjct: 219 TCIQGLAGLEVHRLVLG---------------EFRNEGNLEKFDKSALEGLCNLTIEEF- 262

Query: 227 ECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCY 286
                  L      +           ++  F +     ++ +    +    + +E+ +C 
Sbjct: 263 ------RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCK 315

Query: 287 ALEEIVSDVPEVMMG-NLNPFAQFHFLCFSYLPNLKSIY 324
              +  +   + +           +      LP+L+ + 
Sbjct: 316 -FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 47  PDVRKWEKNVRRLSLMENQIENL--SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLN 104
           PD+    +N+  L L + Q+E L  +   +   L+ L +++N     +D+  ++ +  L 
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQ 521

Query: 105 VLNLSGAIRLYSFPLGI--SKLISLQHLDLSN 134
           VL+ S    + +           SL  L+L+ 
Sbjct: 522 VLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 552

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG-AI 112
           K  + L+L  N IE +S +     LR L L  N  +++I          L  L +S   I
Sbjct: 48  KACKHLALSTNNIEKISSLSGMENLRILSLGRNL-IKKI-ENLDAVADTLEELWISYNQI 105

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELP--KELNALVNLTCLNLEE 157
              S   GI KL++L+ L +SN  I       +L AL  L  L L  
Sbjct: 106 ASLS---GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 7/132 (5%)

Query: 55  NVRRLSLMENQIENLSEVPTC----PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
            +  L L  NQ++ LS++         L+ L ++ N+       G       L  LN+S 
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 111 AIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLIS 170
              L            ++ LDL +  I  +PK++  L  L  LN+    +L  +P  +  
Sbjct: 409 N-ILTDTIFR-CLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFD 465

Query: 171 SFSSLHVLRIFG 182
             +SL  + +  
Sbjct: 466 RLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 56/315 (17%), Positives = 104/315 (33%), Gaps = 49/315 (15%)

Query: 54  KNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
           +    L++ +N I  L    + +   LR L +++N  ++ +D   F+    L  L+LS  
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSH- 78

Query: 112 IRLYSFPLGISKLISLQHLDLSNTGIAELP--KELNALVNLTCLNLEETWRLTVIPRRLI 169
            +L          ++L+HLDLS      LP  KE   +  L  L L  T  L       I
Sbjct: 79  NKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSSVLPI 135

Query: 170 SSFSSLHVLRIFGSGYSYSDG---------------MIGNGEFEQLCGFRRSKSLDVSAL 214
           +  +   VL + G  Y   +                   N EF  +         ++   
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 215 -------ADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFV-------FHSLKKFQIS 260
                   +        +A+     +L     + ++ T  SF+         ++  F IS
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

Query: 261 YCKELKDLTFLIF--------APNLKSIEVDSCYALEEIVSDV---PEVMMGNLNPFAQF 309
             K    L F  F        A ++  +  D     +  + ++     +    ++     
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 310 HFLCFSYLPNLKSIY 324
           H LC S +     + 
Sbjct: 316 HMLCPSKISPFLHLD 330

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 24/178 (13%), Positives = 50/178 (28%), Gaps = 13/178 (7%)

Query: 12  TWKCTKEAMLPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE 71
           TW      +     + +      ++   G       D      +++ LS+ +   +    
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG--TSLKALSIHQVVSDVFGF 290

Query: 72  VPTCPY-----LRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGI-SKLI 125
             +  Y     +       +   R +       +     L+ S    L          L 
Sbjct: 291 PQSYIYEIFSNMNIKNFTVSG-TRMVHMLCPSKISPFLHLDFSNN-LLTDTVFENCGHLT 348

Query: 126 SLQHLDLSNTGIAELPKELNA---LVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRI 180
            L+ L L    + EL K       + +L  L++ +        +   S   SL  L +
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 9/132 (6%)

Query: 55  NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
           +V  + L  N I  L+E        L+ L +    P   I +  F+ +  L +L L    
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN- 89

Query: 113 RLYSFPLGI-SKLISLQHLDLSNTGIAELPKELNA---LVNLTCLNLEETWRLTVI-PRR 167
           +      G  + L +L+ L L+   +       N    L +L  L L +   +  I P  
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPAS 148

Query: 168 LISSFSSLHVLR 179
              +    HVL 
Sbjct: 149 FFLNMRRFHVLD 160

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 18/143 (12%), Positives = 40/143 (27%), Gaps = 9/143 (6%)

Query: 42  GLSETPDVRKWEKNVRRLSLMENQIENLSEVP----TCPYLRTLFLNNNAPLRRIDSGFF 97
             ++   +          S      ++             ++T  L+ +  +  +    F
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVF 295

Query: 98  QSMPRLNVLNLSGAIRLYSFPLGI-SKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNL 155
                L  L L+    +          L  L  L+LS   +  +   +   L  L  L+L
Sbjct: 296 SHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354

Query: 156 EETWRLTVIPRRLISSFSSLHVL 178
                +  +  +      +L  L
Sbjct: 355 SYN-HIRALGDQSFLGLPNLKEL 376

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 54  KNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
            ++ +L+L +N+I  + +       +L  L L+ N  L  IDS  F+++ +L VL+LS  
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYN 357

Query: 112 IRLYSFPLGI-SKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLE 156
             + +        L +L+ L L    +  +P    + L +L  + L 
Sbjct: 358 -HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 54  KNVRRLSLMENQIENLSEVP--TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
            ++ +L+L +N + ++          L  L L+ N  +R +    F  +P L  L L   
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN 381

Query: 112 IRLYSFPLGI-SKLISLQHLDLSN 134
            +L S P GI  +L SLQ + L  
Sbjct: 382 -QLKSVPDGIFDRLTSLQKIWLHT 404

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 53/307 (17%), Positives = 103/307 (33%), Gaps = 27/307 (8%)

Query: 55  NVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
             + LSL +N I  L    +     LR L L++N  +R +D   F     L  L++S   
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSH-N 110

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELP--KELNALVNLTCLNLEETWRLTVIPRRLIS 170
           RL +       + SL+HLDLS      LP  KE   L  LT L L    +   +    + 
Sbjct: 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LL 164

Query: 171 SFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYG 230
             + LH+  I     SY          +             ++L  ++    +       
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 231 LAELKMDYKSVVQNTGQSFVFH---SLKKFQISYCKELKDLTFLIFA----PNLKSIEVD 283
           L+ +K++ ++  +            +L    + + +     +  +F       ++ + + 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 284 SCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKV--IHC 341
           +    E I  +        L        L   ++ N   ++ K   +    EM +  +  
Sbjct: 285 NLTITERIDREEFTYSETALK------SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338

Query: 342 LKLKKLP 348
                + 
Sbjct: 339 SDTPFIH 345

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 55  NVRRLSLMENQIENLSEVPTCP----YLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
            ++ L L  N ++N  +V         L TL ++ N+               + VLNLS 
Sbjct: 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437

Query: 111 AIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLIS 170
            +   S    +     ++ LDL N  I  +PK++  L  L  LN+    +L  +P  +  
Sbjct: 438 NMLTGSVFRCLPP--KVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFD 494

Query: 171 SFSSLHVLRIFG 182
             +SL  + +  
Sbjct: 495 RLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 12/216 (5%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRI-DSGFFQSMPRLNVLNLSGAI 112
           +++  L +  N+++N+S  P    LR L L+ N     +     F ++ +L  L LS A 
Sbjct: 100 QDLEYLDVSHNRLQNISCCPM-ASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAA- 156

Query: 113 RLYSFPLGISKLISLQ--HLDLSNTGIAELPKELNALVNLTCLNLEE-TWRLTVIPRRL- 168
           +     L     + L    LDL +  I     E   + N T L+L      L  +   + 
Sbjct: 157 KFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216

Query: 169 ISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAEC 228
           +++   L +  I  +  +    M    E  +        +L          +   +    
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV-TLQHIETTWKCSVKLFQFFWP 275

Query: 229 YGLAELKMD---YKSVVQNTGQSFVFHSLKKFQISY 261
             +  L +        +     ++   +LK   I +
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 52  WEKNVRRLSLMENQIENLSEVPTC--PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS 109
           W +++  L+L  N +     V  C  P ++ L L+NN  +  I       +  L  LN++
Sbjct: 426 WAESILVLNLSSNMLTGS--VFRCLPPKVKVLDLHNN-RIMSIPKDVT-HLQALQELNVA 481

Query: 110 GAIRLYSFPLGI-SKLISLQHLDLSN 134
              +L S P G+  +L SLQ++ L +
Sbjct: 482 S-NQLKSVPDGVFDRLTSLQYIWLHD 506

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG-AI 112
           + +  LS +   + +++ +P    L+ L L++N  +        +  P L  LNLSG  I
Sbjct: 42  EELEFLSTINVGLTSIANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELP 141
           +  S    + KL +L+ LDL N  +  L 
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 2/116 (1%)

Query: 27  DIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNN 86
                +E  L    +   +   +     N+  LSL+   + ++S +P  P L+ L L+ N
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSEN 81

Query: 87  APLRRIDSGFFQSMPRLNVLNLSG-AIRLYSFPLGISKLISLQHLDLSNTGIAELP 141
             +        + +P L  LNLSG  ++  S    + KL  L+ LDL N  +  L 
Sbjct: 82  R-IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 17/142 (11%)

Query: 54  KNVRRLSLMENQIENL--SEVPTCPYLRTLFLNNNAPLRRI-DSGFFQSMPRLNVLNLSG 110
             +  L+L  NQI  +  +       +  L   +N  L+ I +    +S+  ++ ++ S 
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSY 411

Query: 111 -------AIRLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLT 162
                              K I++  ++LSN  I++ PKE  +    L+ +NL     LT
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLT 470

Query: 163 VIPR----RLISSFSSLHVLRI 180
            IP+        +F + ++L  
Sbjct: 471 EIPKNSLKDENENFKNTYLLTS 492

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 14/134 (10%)

Query: 54  KNVRRLSLMENQIENLSE---VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
             +  + L  N++  LS+     T PYL  + L+ N+   +  +        L    +  
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLN-SSTLKGFGIRN 545

Query: 111 AIRLY------SFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVI 164
                       +P GI+   SL  L + +  I ++ +++    N++ L++++      I
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDN-PNISI 602

Query: 165 PRRLISSFSSLHVL 178
               +  +    + 
Sbjct: 603 DLSYVCPYIEAGMY 616

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 18/143 (12%)

Query: 54  KNVRRLSLMENQIENL--SEVPTCPYLRTLFLNNN------APLRRIDSGFFQSMPRLNV 105
            NV  ++L  NQI         T   L ++ L  N          + ++  F++   L  
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 106 LNLSGAIRLYSFP--LGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRL-- 161
           ++L    +L         + L  L  +DLS    ++ P +      L    +        
Sbjct: 493 IDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQG 551

Query: 162 ----TVIPRRLISSFSSLHVLRI 180
                  P   I+   SL  L+I
Sbjct: 552 NRTLREWP-EGITLCPSLTQLQI 573

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 9/137 (6%), Positives = 31/137 (22%), Gaps = 8/137 (5%)

Query: 54  KNVRRLSLMENQIE------NLSEVPTCPYLRTLFL-NNNAPLRRIDSGFFQSMPRLNVL 106
             +  L+L  +  +          +              +     +D    +    L   
Sbjct: 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164

Query: 107 NLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPR 166
            ++   +  S        +    +   +  I  + K +  L  L    +  +        
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS-PFVAENI 223

Query: 167 RLISSFSSLHVLRIFGS 183
                  +    + + +
Sbjct: 224 CEAWENENSEYAQQYKT 240

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 26/188 (13%), Positives = 58/188 (30%), Gaps = 12/188 (6%)

Query: 55  NVRRLSLMENQIENL--SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
            V  LSL            +     L  L L ++           + +           +
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 113 RLYSFPLGISKLISLQHLDL------SNTGIAELPKELNALVNLTCLNLEETWRLTVIPR 166
           R++     +         DL      S+     + K     +  T +       +T +  
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN-NITFVS- 199

Query: 167 RLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIA 226
           + +   + L    +  S +  ++ +    E E     ++ K+ D+    +LK L  +++ 
Sbjct: 200 KAVMRLTKLRQFYMGNSPFV-AENICEAWENENSEYAQQYKTEDLK-WDNLKDLTDVEVY 257

Query: 227 ECYGLAEL 234
            C  L +L
Sbjct: 258 NCPNLTKL 265

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 2/112 (1%)

Query: 31  EKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLR 90
            ++  L   G  +    ++         +   +N+I  L   P    L+TL +NNN  + 
Sbjct: 19  VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNR-IC 77

Query: 91  RIDSGFFQSMPRLNVLNLSG-AIRLYSFPLGISKLISLQHLDLSNTGIAELP 141
           RI  G  Q++P L  L L+  ++        ++ L SL +L +    +    
Sbjct: 78  RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 16/123 (13%)

Query: 59  LSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG-AIRLYSF 117
           + L    IE  ++       R L L     +  I+     ++ + + ++ S   IR    
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYK-IPVIE-NLGATLDQFDAIDFSDNEIRKLD- 58

Query: 118 PLGISKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETWRLTVIPRRLISSFSSLH 176
             G   L  L+ L ++N  I  + + L  AL +LT L L             +     L 
Sbjct: 59  --GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT---------NNSLVELGDLD 107

Query: 177 VLR 179
            L 
Sbjct: 108 PLA 110

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 12/128 (9%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG-AI 112
             V+  +   + I++L+ +     L+ L L++N  +  +     + + +L  L+++   +
Sbjct: 41  SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNRL 97

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSF 172
           +  +   GI     L  L L N  + +    L  L NL  L++    +L  I    +   
Sbjct: 98  KNLN---GIPSA-CLSRLFLDNNELRDT-DSLIHLKNLEILSIRNN-KLKSIVM--LGFL 149

Query: 173 SSLHVLRI 180
           S L VL +
Sbjct: 150 SKLEVLDL 157

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 8e-08
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 12/128 (9%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG-AI 112
            N  + +L +  + +L        ++    +N+  ++ +     Q    L  L+LS   I
Sbjct: 19  ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNS-NIQSLAG--MQFFTNLKELHLSHNQI 75

Query: 113 RLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSF 172
              S    +  L  L+ L ++   +  L         L+ L L+    L       +   
Sbjct: 76  SDLS---PLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNN-ELRDTD--SLIHL 127

Query: 173 SSLHVLRI 180
            +L +L I
Sbjct: 128 KNLEILSI 135

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 61  LMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLG 120
                I  +   P         L     +  + S   + +  +   N   +  + S   G
Sbjct: 4   QRPTPINQVFPDPGLANAVKQNLGKQ-SVTDLVS--QKELSGVQNFNGDNS-NIQSLA-G 58

Query: 121 ISKLISLQHLDLSNTGIAELPKELNALVNLTCLNL 155
           +    +L+ L LS+  I++L   L  L  L  L++
Sbjct: 59  MQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSV 92

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
           KN+  LS+  N+++++  +     L  L L+ N  +          + ++N ++L+G  +
Sbjct: 128 KNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN-EITNTGG--LTRLKKVNWIDLTG-QK 183

Query: 114 LYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS 173
             + P+     + + +      G    P  ++   +     +   W L V    +   FS
Sbjct: 184 CVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCV--LWELPVYTDEVSYKFS 241

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 17/132 (12%)

Query: 55  NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRL 114
           +++ L +  NQ+  L E+P    L  +  +NN  L  +          L VL++    +L
Sbjct: 121 SLKHLDVDNNQLTMLPELPA--LLEYINADNNQ-LTMLPE----LPTSLEVLSVRNN-QL 172

Query: 115 YSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLT----CLNLEETWRLTVIPRRLIS 170
              P       SL+ LD+S   +  LP       +           E  R+T IP   I 
Sbjct: 173 TFLPELPE---SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN-RITHIPEN-IL 227

Query: 171 SFSSLHVLRIFG 182
           S      + +  
Sbjct: 228 SLDPTCTIILED 239

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 9e-07
 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 18/129 (13%)

Query: 52  WEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
                  L L    + +L +    P +  L +  NA L  +          L  L+    
Sbjct: 57  LINQFSELQLNRLNLSSLPDN-LPPQITVLEITQNA-LISLPELPAS----LEYLDACD- 109

Query: 112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISS 171
            RL + P       SL+HLD+ N  +  LP+       L  +N +   +LT++P      
Sbjct: 110 NRLSTLP---ELPASLKHLDVDNNQLTMLPELPA---LLEYINADNN-QLTMLP----EL 158

Query: 172 FSSLHVLRI 180
            +SL VL +
Sbjct: 159 PTSLEVLSV 167

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 14/105 (13%)

Query: 78  LRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGI 137
                 N N  +  +           + L L+  + L S P  +     +  L+++   +
Sbjct: 39  QALPGENRNEAVSLLKECLINQ---FSELQLNR-LNLSSLPDNLPP--QITVLEITQNAL 92

Query: 138 AELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFG 182
             LP+   +L  L   +     RL+ +P       +SL  L +  
Sbjct: 93  ISLPELPASLEYLDACDN----RLSTLP----ELPASLKHLDVDN 129

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 7/125 (5%)

Query: 55  NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQ---SMPRLNVLNLSGA 111
           ++  LS+  NQ+  L E+P    L  L ++ N  L  + +   +   S            
Sbjct: 161 SLEVLSVRNNQLTFLPELPES--LEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCREN 217

Query: 112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISS 171
            R+   P  I  L     + L +  ++   +E  +               ++   +  + 
Sbjct: 218 -RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

Query: 172 FSSLH 176
              L 
Sbjct: 277 HRPLA 281

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 7/143 (4%)

Query: 44  SETPDVRKWEKNVRRLSLMENQIENLSE-VPTCP-YLRTLFLNNNAPLRRIDSGFFQSMP 101
           + +    +    +  L+L  NQ++ LS  V      L TL L NN  L  +  G F  + 
Sbjct: 49  TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLT 107

Query: 102 RLNVLNLSGAIRLYSFPLGI-SKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETW 159
           +L+ L L G  +L S P G+  +L  L+ L L+   +  +P    + L NL  L+L  T 
Sbjct: 108 QLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL-STN 165

Query: 160 RLTVIPRRLISSFSSLHVLRIFG 182
           +L  +P         L  + +FG
Sbjct: 166 QLQSVPHGAFDRLGKLQTITLFG 188

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 27/131 (20%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
             +R+++   N+I ++ E                       G F+    +N + L+   R
Sbjct: 57  PQLRKINFSNNKITDIEE-----------------------GAFEGASGVNEILLTSN-R 92

Query: 114 LYSFPLGI-SKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETWRLTVIPRRLISS 171
           L +    +   L SL+ L L +  I  +  +    L ++  L+L +  ++T +      +
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDT 151

Query: 172 FSSLHVLRIFG 182
             SL  L +  
Sbjct: 152 LHSLSTLNLLA 162

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.9 bits (119), Expect = 5e-07
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 54  KNVRRLSLMENQIENLSEVP-----TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNL 108
             ++ L+L    +E  S V          L+ L L++N+      +       +LN LNL
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

Query: 109 SGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLE 156
           S    L   P G+     L  LDLS   +   P     L  +  L+L+
Sbjct: 261 SFT-GLKQVPKGLPA--KLSVLDLSYNRLDRNPSPDE-LPQVGNLSLK 304

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 16/136 (11%)

Query: 54  KNVRRLSLMENQIENLS--EVPTCPYLRTLFLNNN---APLRRIDSGFFQSMPRLNVLNL 108
             ++ LS+ +    N S  +V   P L TL L++N        I +      P L VL L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 109 SGAIRLYSFPLGISKLI----SLQHLDLSNTGIAELPKELNA--LVNLTCLNLEETWRLT 162
             A  + +     S L      LQ LDLS+  + +     +      L  LNL  T  L 
Sbjct: 209 RNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLK 266

Query: 163 VIPRRLISSFSSLHVL 178
            +P+ L    + L VL
Sbjct: 267 QVPKGL---PAKLSVL 279

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 27/126 (21%)

Query: 46  TPDVRKWEKNVRRLSLMENQIENLSEVPT----CPYLRTLFLNNNAPLRRIDSGFFQS-- 99
             D       V  L L    +     +P+     PYL  L++     L     G      
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL----VGPIPPAI 97

Query: 100 --MPRLNVL-----NLSGAIRLYSFPLGISKLISLQHLDLSN---TGIAELPKELNALVN 149
             + +L+ L     N+SGAI     P  +S++ +L  LD S    +G   LP  +++L N
Sbjct: 98  AKLTQLHYLYITHTNVSGAI-----PDFLSQIKTLVTLDFSYNALSG--TLPPSISSLPN 150

Query: 150 LTCLNL 155
           L  +  
Sbjct: 151 LVGITF 156

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 58/409 (14%), Positives = 112/409 (27%), Gaps = 92/409 (22%)

Query: 3   VKMILSPVETW---KCTKEAMLPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEK-NVRR 58
           V+ +L     +       E   P M + +  E+ + L           D + + K NV R
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL---------YNDNQVFAKYNVSR 133

Query: 59  LSLMENQIENLSEVPTCPYLRTLF---------LNNNAPLRRIDSGFFQSMPRLNV--LN 107
           L       + L E+     +  +          +  +             M    +  LN
Sbjct: 134 LQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDV-CL--SYKVQCKMDF-KIFWLN 188

Query: 108 LSGAIRLYSFPLGISKLISLQH-LDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPR 166
           L       S    +  L  L + +D + T  ++    +   ++     L    +      
Sbjct: 189 LK---NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 167 RLI--SSFSSLHVLRIFGSG---------YSYSDGMIGNGEF-----EQLCGFRRSKSLD 210
            L+   +  +      F               +D +                    +   
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 211 VSALA------DLKR----LNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQIS 260
           +          DL R     N  +++    +AE   D  +   N             + S
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 261 Y----CKELKDL--TFLIFAPNLK-SIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLC 313
                  E + +     +F P+      + S    + I SDV  V+        + H   
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV-------NKLH--- 412

Query: 314 FSYLPNLKSIYRKPLPFPHLKEMKV-IHCLKLK-KLPLDSNRAKERKIV 360
                      +  L     KE  + I  + L+ K+ L++  A  R IV
Sbjct: 413 -----------KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 15/133 (11%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSG---FFQSMPRLNVLNLSG 110
             ++ L++  N+I    +V  C  L  L +++N       S    F      L  L++SG
Sbjct: 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN-F----STGIPFLGDCSALQHLDISG 232

Query: 111 AIRLY-SFPLGISKLISLQHLDLSNTGIA-ELPKELNALVNLTCLNLEETWRLT-VIPRR 167
             +L   F   IS    L+ L++S+      +P     L +L  L+L E  + T  IP  
Sbjct: 233 N-KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAEN-KFTGEIPDF 288

Query: 168 LISSFSSLHVLRI 180
           L  +  +L  L +
Sbjct: 289 LSGACDTLTGLDL 301

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 10/135 (7%)

Query: 54  KNVRRLSLMENQIENLSEVPT--CPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111
             ++ L++  NQ      +P      L+ L L  N     I      +   L  L+LSG 
Sbjct: 247 TELKLLNISSNQFV--GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 112 IRLY-SFPLGISKLISLQHLDLSNTGIA-ELPKE-LNALVNLTCLNLEETWRLT-VIPRR 167
              Y + P        L+ L LS+   + ELP + L  +  L  L+L      +  +P  
Sbjct: 305 -HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPES 362

Query: 168 LISSFSSLHVLRIFG 182
           L +  +SL  L +  
Sbjct: 363 LTNLSASLLTLDLSS 377

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 42/188 (22%), Positives = 62/188 (32%), Gaps = 28/188 (14%)

Query: 54  KNVRRLSLMENQIE-NL-SEVPTCPYLRTLFLNNNAPLRRIDSG----FFQSMPRLNVL- 106
             +R L L  N +E  +  E+     L TL L+ N     + +G       +   LN + 
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN----DL-TGEIPSGLSNCTNLNWIS 496

Query: 107 ----NLSGAIRLYSFPLGISKLISLQHLDLSN---TGIAELPKELNALVNLTCLNLEETW 159
                L+G       P  I +L +L  L LSN   +G   +P EL    +L  L+L    
Sbjct: 497 LSNNRLTG-----EIPKWIGRLENLAILKLSNNSFSG--NIPAELGDCRSLIWLDLNTN- 548

Query: 160 RLT-VIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLK 218
                IP  +      +    I G  Y Y        E          + +    L  L 
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608

Query: 219 RLNRLKIA 226
             N   I 
Sbjct: 609 TRNPCNIT 616

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 54  KNVRRLSLMENQ----IENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVL--- 106
            ++  L L  N     +  L+ + +C  L+ L +++N             +  L VL   
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159

Query: 107 --NLSGAIRLYSFPLGISKLISLQHLDLSNTGIA-ELPKELNALVNLTCLNLEETWRLT- 162
             ++SGA       +       L+HL +S   I+ ++   ++  VNL  L++      + 
Sbjct: 160 ANSISGAN--VVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN-NFST 214

Query: 163 VIPRRLISSFSSLHVLRIFG 182
            IP   +   S+L  L I G
Sbjct: 215 GIP--FLGDCSALQHLDISG 232

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 35/169 (20%), Positives = 57/169 (33%), Gaps = 36/169 (21%)

Query: 75  CPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS-----GAIRLYSFPLGISKLISLQH 129
              L +LFL+N+     +    F+    L  L+LS     G +   +    +     L+ 
Sbjct: 76  LTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPV---TTLTSLGSCSGLKF 130

Query: 130 LDLSN---TGIAELPKELNALVNLTCLNLEETWRLT-VIPR--RLISSFSSLHVLRIFGS 183
           L++S+       ++   L  L +L  L+L     ++        L      L  L I G+
Sbjct: 131 LNVSSNTLDFPGKVSGGLK-LNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGN 188

Query: 184 GYSYSDGMIGNGEFEQLCGFRRSKSLDVS---------ALADLKRLNRL 223
             S   G +       L      + LDVS          L D   L  L
Sbjct: 189 KIS---GDVDVSRCVNL------EFLDVSSNNFSTGIPFLGDCSALQHL 228

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 10/115 (8%)

Query: 102 RLNVLNLSGA---IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEET 158
           ++  ++LS     +   +    +  L  L+ L LSN+ I           +LT L+L   
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

Query: 159 WRLTVIPRRL-ISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS 212
                +     + S S L  L +  +           G+          + LD+S
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLD------FPGKVSGGLKLNSLEVLDLS 159

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 33/143 (23%), Positives = 47/143 (32%), Gaps = 29/143 (20%)

Query: 54  KNVRRLSLMENQIENLSEVPT-----CPYLRTLFLNNNAPLRRIDSGFFQS-MPRLNVL- 106
           + ++ L L  N+     E+P         L TL L++N     I     Q+    L  L 
Sbjct: 343 RGLKVLDLSFNEFS--GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 107 ----NLSGAIRLYSFPLGISKLISLQHLDLSN---TGIAELPKELNALVNLTCLNLEETW 159
                 +G I     P  +S    L  L LS    +G   +P  L +L  L  L L    
Sbjct: 401 LQNNGFTGKI-----PPTLSNCSELVSLHLSFNYLSG--TIPSSLGSLSKLRDLKLWLN- 452

Query: 160 RLT-VIPRRLISSFSSLHVLRIF 181
            L   IP         +  L   
Sbjct: 453 MLEGEIP----QELMYVKTLETL 471

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 15/65 (23%)

Query: 99  SMPRLNVLNLS-----GAIRLYSFPLGISKLISLQHLDLSN---TGIAELPKELNALVNL 150
           SMP L +LNL      G+I     P  +  L  L  LDLS+    G   +P+ ++AL  L
Sbjct: 654 SMPYLFILNLGHNDISGSI-----PDEVGDLRGLNILDLSSNKLDG--RIPQAMSALTML 706

Query: 151 TCLNL 155
           T ++L
Sbjct: 707 TEIDL 711

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 39/229 (17%), Positives = 64/229 (27%), Gaps = 34/229 (14%)

Query: 72  VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLI---SLQ 128
              C  L ++ + +   L     GFF++   L              P     L+    L 
Sbjct: 216 ARNCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273

Query: 129 HLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS 188
            L LS  G  E+P        +  L+L      T     LI    +L VL          
Sbjct: 274 RLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE--------- 324

Query: 189 DGMIGNGEFEQLCGFRRSKSLDVSALADL-KRLNRLKIAECYGLAELKMDYKSVVQNTGQ 247
                             + L    LA   K+L RL+I        ++ +   V Q    
Sbjct: 325 -----------TRNVIGDRGL--EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371

Query: 248 SFV--FHSLKKFQISYCKELKDLTFLIFA---PNLKSIEVDSCYALEEI 291
           +       L+   +    ++ + +         NL    +      E I
Sbjct: 372 ALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERI 419

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 33/260 (12%), Positives = 73/260 (28%), Gaps = 47/260 (18%)

Query: 54  KNVRRLSLMENQIENLSE------VPTCPYLRTLFLNNNAPLRRIDSG---FFQSMPRLN 104
            ++  L L  ++    +       V  C  ++TL +  ++   +         Q    L 
Sbjct: 138 DDLETLKL--DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195

Query: 105 VLNLS----GAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWR 160
           VLN        I             SL  + + +  I EL     A  NL          
Sbjct: 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNE 255

Query: 161 LTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADL-KR 219
              +P + ++      +                        G       ++  L     +
Sbjct: 256 DIGMPEKYMNLVFPRKLC---------------------RLGLSYMGPNEMPILFPFAAQ 294

Query: 220 LNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLI-FAPNLK 278
           + +L +       E   D+ +++Q         +L+  +       + L  L  +   LK
Sbjct: 295 IRKLDLLYALLETE---DHCTLIQK------CPNLEVLETRNVIGDRGLEVLAQYCKQLK 345

Query: 279 SIEVDSCYALEEIVSDVPEV 298
            + ++     + +  +   V
Sbjct: 346 RLRIERGADEQGMEDEEGLV 365

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 55  NVRRLSLMENQIENLSEVP--TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112
           N + L L +NQI  L      +   L+ L+L +N  L  +  G F S+ +L VL+L    
Sbjct: 41  NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN- 98

Query: 113 RLYSFPLGI-SKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISS 171
           +L   P  +  +L+ L+ L +    + ELP+ +  L +LT L L +  +L  IP      
Sbjct: 99  QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL-DQNQLKSIPHGAFDR 157

Query: 172 FSSLHVLRIFG 182
            SSL    +FG
Sbjct: 158 LSSLTHAYLFG 168

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 7/126 (5%)

Query: 55  NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRL 114
           ++ ++    + I+++  +   P +R L L  N  L  I     + +  L  L L+G  +L
Sbjct: 42  SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK-LHDI--SALKELTNLTYLILTGN-QL 97

Query: 115 YSFPLGI-SKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETWRLTVIPRRLISSF 172
            S P G+  KL +L+ L L    +  LP  + + L NLT LNL    +L  +P+ +    
Sbjct: 98  QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKL 156

Query: 173 SSLHVL 178
           ++L  L
Sbjct: 157 TNLTEL 162

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 11/134 (8%)

Query: 55  NVRRLSLMENQIENLS----EVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
           N+  L L  NQ+++L     +  T   L+ L L  N  L+ +  G F  +  L  LNL+ 
Sbjct: 86  NLTYLILTGNQLQSLPNGVFDKLT--NLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAH 142

Query: 111 AIRLYSFPLGI-SKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETWRLTVIPRRL 168
             +L S P G+  KL +L  LDLS   +  LP+ + + L  L  L L +  +L  +P  +
Sbjct: 143 N-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGV 200

Query: 169 ISSFSSLHVLRIFG 182
               +SL  + +  
Sbjct: 201 FDRLTSLQYIWLHD 214

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 55  NVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113
           +V  L L  NQ   + +      +L  + L+NN  +  + +  F +M +L  L LS   R
Sbjct: 32  DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN-R 89

Query: 114 LYSFPLGI-SKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNL 155
           L   P      L SL+ L L    I+ +P+   N L  L+ L +
Sbjct: 90  LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 17/101 (16%)

Query: 43  LSETPDVRKWEKNVRRLSLMENQIE--------NLSEVPTCPYLRTLFLNNNAPLRRIDS 94
            +  P      K++  + L  N+I         N+++      L TL L+ N  LR I  
Sbjct: 43  FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ------LLTLILSYNR-LRCIPP 95

Query: 95  GFFQSMPRLNVLNLSGAIRLYSFPLGI-SKLISLQHLDLSN 134
             F  +  L +L+L G   +   P G  + L +L HL +  
Sbjct: 96  RTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGA 135

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 69  LSEVPTC--PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGI-SKLI 125
           L E+P     +   L LN+N   R    G F  +P L  L L    +L            
Sbjct: 20  LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGAS 78

Query: 126 SLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFG 182
            +Q L L    I E+  ++   L  L  LNL +  +++ +        +SL  L +  
Sbjct: 79  HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLAS 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 79  RTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGI-SKLISLQHLDLSNTGI 137
             L L +N  L+ +  G F  + +L  L+LS   ++ S P G+  KL  L  L L    +
Sbjct: 31  TRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKL 88

Query: 138 AELPKEL-NALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFG 182
             LP  + + L  L  L L +T +L  +P  +    +SL  + +  
Sbjct: 89  QSLPNGVFDKLTQLKELAL-DTNQLKSVPDGIFDRLTSLQKIWLHT 133

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 7/130 (5%)

Query: 57  RRLSLMENQIENLSEVP--TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRL 114
             L L  N +++L          L  L+L  N  L+ + +G F  +  L  LNLS   +L
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN-QL 88

Query: 115 YSFPLGI-SKLISLQHLDLSNTGIAELPKEL-NALVNLTCLNLEETWRLTVIPRRLISSF 172
            S P G+  KL  L+ L L+   +  LP  + + L  L  L L    +L  +P  +    
Sbjct: 89  QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL-YQNQLKSVPDGVFDRL 147

Query: 173 SSLHVLRIFG 182
           +SL  + +  
Sbjct: 148 TSLQYIWLHD 157

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 39/234 (16%), Positives = 75/234 (32%), Gaps = 50/234 (21%)

Query: 67  ENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLIS 126
           + L+E  +   ++ + L+N+        G      +L  L+L G          ++K  +
Sbjct: 84  QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143

Query: 127 LQHLDLS------NTGIAELPKELNALVNLTCLNLEETWRLT--VIPRRLISSFSSLHVL 178
           L  L+LS         +  L   L++   L  LNL   +  T   +   +     ++  L
Sbjct: 144 LVRLNLSGCSGFSEFALQTL---LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200

Query: 179 RIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALAD-LKRLNRLKIAECYGLAELKMD 237
            + G   +                       D+S L      L  L +++   L      
Sbjct: 201 NLSGYRKNLQKS-------------------DLSTLVRRCPNLVHLDLSDSVML------ 235

Query: 238 YKSVVQNTGQSFV----FHSLKKFQISYCKELKDLTFLIFA--PNLKSIEVDSC 285
                      F      + L+   +S C ++   T L     P LK+++V   
Sbjct: 236 -------KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.1 bits (95), Expect = 4e-04
 Identities = 16/112 (14%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 65  QIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQS--MPRLNVLNLS----GAIRLYSFP 118
               L      P L+ L + +      +   F +S  +P+L  +++S             
Sbjct: 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300

Query: 119 LGISKLISLQHLDLSNT-----GIAELPKELNALVNLTCLNL-EETWRLTVI 164
             + K+  L+ +++           EL K L   ++++     ++ +   +I
Sbjct: 301 DHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDYSYPMI 352

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	386
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.86
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.84
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.83
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.79
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.79
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.76
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.73
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.72
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.69
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.69
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.68
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.68
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.66
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.66
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.61
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.59
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.58
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.57
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.57
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.55
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.54
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.53
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.4
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.38
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.37
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.37
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.34
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.34
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.32
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.31
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.3
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.29
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.27
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.21
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.14
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.14
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.1
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.76
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.75
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.74
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.73
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.69
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.66
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.6
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.48
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.39
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.94
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.94
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.75
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.71
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.7
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.4
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.25
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.07
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.26

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=3.5e-26  Score=219.87  Aligned_cols=299  Identities=20%  Similarity=0.232  Sum_probs=235.8

Q ss_pred             hccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcC
Q 040192           26 SDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRL  103 (386)
Q Consensus        26 ~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L  103 (386)
                      |.|.. ....+.+.+.++..+|.  .++++++.|++++|.+..++.  ...+++|++|++++| .+..+.+..+.++++|
T Consensus         7 C~C~~-~~~~v~c~~~~l~~ip~--~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L   82 (477)
T 2id5_A            7 CECSA-QDRAVLCHRKRFVAVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNL   82 (477)
T ss_dssp             CEEET-TTTEEECCSCCCSSCCS--CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred             CeECC-CCCEEEeCCCCcCcCCC--CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccC
Confidence            44443 34678899999999886  233489999999999999654  388999999999999 7777766668999999


Q ss_pred             ceecccCCccccccch-hhcCCCccCEEEcCCCCCCcc-cHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEe
Q 040192          104 NVLNLSGAIRLYSFPL-GISKLISLQHLDLSNTGIAEL-PKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIF  181 (386)
Q Consensus       104 ~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  181 (386)
                      ++|++++| .+..+|. .+..+++|++|++++|.+..+ +..+..+++|+.|++++| .+..++...+..+++|++|+++
T Consensus        83 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~  160 (477)
T 2id5_A           83 RTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLE  160 (477)
T ss_dssp             CEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEE
T ss_pred             CEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECC
Confidence            99999999 8888865 578999999999999999865 457889999999999999 4555555458999999999999


Q ss_pred             ccCCcccc--CCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEE
Q 040192          182 GSGYSYSD--GMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQ  258 (386)
Q Consensus       182 ~~~~~~~~--~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  258 (386)
                      +|.+....  .+..+++|+.|. ..+.+.+.....+..+++|+.|++++|......+...+          ...+|+.|+
T Consensus       161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----------~~~~L~~L~  230 (477)
T 2id5_A          161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL----------YGLNLTSLS  230 (477)
T ss_dssp             SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT----------TTCCCSEEE
T ss_pred             CCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc----------cCccccEEE
Confidence            99887762  245667777776 33344444455678889999999999887765544443          456999999


Q ss_pred             ecCCCCCCccc--cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccc-cCCCcCCCCccE
Q 040192          259 ISYCKELKDLT--FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSI-YRKPLPFPHLKE  335 (386)
Q Consensus       259 l~~~~~l~~~~--~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~  335 (386)
                      +++| .++.++  .+..+++|+.|+|++|. ++.+..       ..+..+++|++|+++++ .+..+ +.....+++|+.
T Consensus       231 l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  300 (477)
T 2id5_A          231 ITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG-------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRV  300 (477)
T ss_dssp             EESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT-------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCE
T ss_pred             CcCC-cccccCHHHhcCccccCeeECCCCc-CCccCh-------hhccccccCCEEECCCC-ccceECHHHhcCcccCCE
Confidence            9999 577765  46889999999999965 776655       36788999999999999 56555 445677899999


Q ss_pred             EeecCcccCcCCCCCc
Q 040192          336 MKVIHCLKLKKLPLDS  351 (386)
Q Consensus       336 L~i~~c~~L~~l~~~~  351 (386)
                      |+++++ +++.++...
T Consensus       301 L~L~~N-~l~~~~~~~  315 (477)
T 2id5_A          301 LNVSGN-QLTTLEESV  315 (477)
T ss_dssp             EECCSS-CCSCCCGGG
T ss_pred             EECCCC-cCceeCHhH
Confidence            999985 788877654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=3.9e-26  Score=210.42  Aligned_cols=283  Identities=18%  Similarity=0.216  Sum_probs=212.2

Q ss_pred             cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192           32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA  111 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  111 (386)
                      ....+.+.+..+..+|.+..++ +|++|++++|.+.+++....+++|++|++++| .+..++.  +..+++|++|++++|
T Consensus        45 ~L~~L~l~~~~i~~~~~~~~~~-~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~l~~n  120 (347)
T 4fmz_A           45 SITKLVVAGEKVASIQGIEYLT-NLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNED  120 (347)
T ss_dssp             TCSEEECCSSCCCCCTTGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECTTS
T ss_pred             cccEEEEeCCccccchhhhhcC-CccEEEccCCccccchhhhcCCcCCEEEccCC-cccCchH--HcCCCcCCEEECcCC
Confidence            3567888888888888888888 89999999998888777788889999999988 6776653  788899999999888


Q ss_pred             ccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCC
Q 040192          112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGM  191 (386)
Q Consensus       112 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  191 (386)
                       .+..++. +..+++|+.|++++|.....+..+..+++|+.|++++| .+..++.  +..+++|+.|++++|.+......
T Consensus       121 -~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~  195 (347)
T 4fmz_A          121 -NISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIEDISPL  195 (347)
T ss_dssp             -CCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCCCGGG
T ss_pred             -cccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccccccc
Confidence             7777765 77888999999988855544455788889999999888 4555555  78888999999998888776555


Q ss_pred             CcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc
Q 040192          192 IGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF  270 (386)
Q Consensus       192 ~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  270 (386)
                      ..++.|+.+. ..+...+.  ..+..+++|++|++++|+... .+.  +.         .+++|+.|++++| .++.++.
T Consensus       196 ~~l~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~-~~~--~~---------~l~~L~~L~l~~n-~l~~~~~  260 (347)
T 4fmz_A          196 ASLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITD-LSP--LA---------NLSQLTWLEIGTN-QISDINA  260 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC-CGG--GT---------TCTTCCEEECCSS-CCCCCGG
T ss_pred             cCCCccceeecccCCCCCC--chhhcCCcCCEEEccCCccCC-Ccc--hh---------cCCCCCEEECCCC-ccCCChh
Confidence            5566666655 22222222  226778899999999886654 222  32         7889999999998 5777777


Q ss_pred             ccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCC
Q 040192          271 LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPL  349 (386)
Q Consensus       271 l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~  349 (386)
                      +..+++|+.|++++|. ++++.         .+..+++|++|++++|......+.....+++|+.|++++|+ ++.++.
T Consensus       261 ~~~l~~L~~L~l~~n~-l~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~  328 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSNQ-ISDIS---------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP  328 (347)
T ss_dssp             GTTCTTCCEEECCSSC-CCCCG---------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred             HhcCCCcCEEEccCCc-cCCCh---------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC
Confidence            8888999999999864 66551         45678899999999984332333345668999999999874 666543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=2.9e-25  Score=204.55  Aligned_cols=277  Identities=17%  Similarity=0.271  Sum_probs=229.0

Q ss_pred             cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192           32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA  111 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  111 (386)
                      ....+.+.+..+.+++.+..++ +|++|++++|.+..++....+++|++|++++| .+..++.  +..+++|++|++++|
T Consensus        67 ~L~~L~l~~n~i~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~l~~n  142 (347)
T 4fmz_A           67 NLEYLNLNGNQITDISPLSNLV-KLTNLYIGTNKITDISALQNLTNLRELYLNED-NISDISP--LANLTKMYSLNLGAN  142 (347)
T ss_dssp             TCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCCGGGTTCTTCSEEECTTS-CCCCCGG--GTTCTTCCEEECTTC
T ss_pred             CccEEEccCCccccchhhhcCC-cCCEEEccCCcccCchHHcCCCcCCEEECcCC-cccCchh--hccCCceeEEECCCC
Confidence            4788999999999998888888 99999999999999887899999999999999 7777766  789999999999999


Q ss_pred             ccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCC
Q 040192          112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGM  191 (386)
Q Consensus       112 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  191 (386)
                      .....+ ..+..+++|++|++++|.+..++. +..+++|+.|++++| .+..++.  +..+++|+.|++++|.+......
T Consensus       143 ~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~  217 (347)
T 4fmz_A          143 HNLSDL-SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFTAYVNQITDITPV  217 (347)
T ss_dssp             TTCCCC-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGGG
T ss_pred             CCcccc-cchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc--ccCCCccceeecccCCCCCCchh
Confidence            444444 458899999999999999988765 789999999999999 5666766  88999999999999998887556


Q ss_pred             CcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc
Q 040192          192 IGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF  270 (386)
Q Consensus       192 ~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  270 (386)
                      ..++.|+.|. ..+...+..  .+..+++|++|++++|.... .  ..+.         .+++|+.|++++| .++.++.
T Consensus       218 ~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~-~--~~~~---------~l~~L~~L~l~~n-~l~~~~~  282 (347)
T 4fmz_A          218 ANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISD-I--NAVK---------DLTKLKMLNVGSN-QISDISV  282 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-C--GGGT---------TCTTCCEEECCSS-CCCCCGG
T ss_pred             hcCCcCCEEEccCCccCCCc--chhcCCCCCEEECCCCccCC-C--hhHh---------cCCCcCEEEccCC-ccCCChh
Confidence            6777777776 333333322  27789999999999996654 2  3333         7899999999999 6888888


Q ss_pred             ccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcc
Q 040192          271 LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCL  342 (386)
Q Consensus       271 l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~  342 (386)
                      +..+++|+.|++++|. ++.....       .+..+++|++|++++| .+..++. ...+++|+.|++++|+
T Consensus       283 ~~~l~~L~~L~L~~n~-l~~~~~~-------~l~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          283 LNNLSQLNSLFLNNNQ-LGNEDME-------VIGGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             GGGCTTCSEEECCSSC-CCGGGHH-------HHHTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSCC-
T ss_pred             hcCCCCCCEEECcCCc-CCCcChh-------HhhccccCCEEEccCC-ccccccC-hhhhhccceeehhhhc
Confidence            8999999999999976 6555442       5678899999999999 4666654 6779999999999864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=1.5e-25  Score=209.94  Aligned_cols=294  Identities=20%  Similarity=0.247  Sum_probs=158.1

Q ss_pred             cEEEEcCCCCCCCCc--ccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192           34 EHLVYAGAGLSETPD--VRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS  109 (386)
Q Consensus        34 ~~l~~~~~~l~~~p~--~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  109 (386)
                      +.+.+.+..+..+|.  +..++ +|++|++++|.+..++..  ..+++|++|++++| .+..+++..++.+++|++|+++
T Consensus        48 ~~l~l~~~~l~~l~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           48 KIVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             SEEEEESCEESEECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             eEEEecCCchhhCChhHhcccc-cCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECC
Confidence            344444444444443  33444 455555555544443321  44455555555544 3444443334445555555555


Q ss_pred             CCccccccchh-hcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192          110 GAIRLYSFPLG-ISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       110 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      +| .+..+|.. +..+++|++|++++|.++.++ ..+..+++|+.|++++| .+..++   +..+++|+.|++++|.+..
T Consensus       126 ~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          126 RN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             SS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred             CC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeecccccccc
Confidence            44 44444332 244455555555555444332 22444445555555544 222222   3344445555554444433


Q ss_pred             ccCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCC
Q 040192          188 SDGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELK  266 (386)
Q Consensus       188 ~~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  266 (386)
                      ...   ...|+.+. ..+.+..   .....+++|+.|++++|.... .  .++.         .+++|+.|++++| .++
T Consensus       201 ~~~---~~~L~~L~l~~n~l~~---~~~~~~~~L~~L~l~~n~l~~-~--~~l~---------~l~~L~~L~Ls~n-~l~  261 (390)
T 3o6n_A          201 LAI---PIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLTD-T--AWLL---------NYPGLVEVDLSYN-ELE  261 (390)
T ss_dssp             EEC---CSSCSEEECCSSCCCE---EECCCCSSCCEEECCSSCCCC-C--GGGG---------GCTTCSEEECCSS-CCC
T ss_pred             cCC---CCcceEEECCCCeeee---ccccccccccEEECCCCCCcc-c--HHHc---------CCCCccEEECCCC-cCC
Confidence            211   11222222 1111111   011224678888888876554 2  3333         6889999999988 455


Q ss_pred             cc--ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccC
Q 040192          267 DL--TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKL  344 (386)
Q Consensus       267 ~~--~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L  344 (386)
                      ..  ..+..+++|+.|++++|. ++.++.        ....+++|++|++++| .+..++.....+++|+.|+++++ .+
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i  330 (390)
T 3o6n_A          262 KIMYHPFVKMQRLERLYISNNR-LVALNL--------YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SI  330 (390)
T ss_dssp             EEESGGGTTCSSCCEEECCSSC-CCEEEC--------SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CC
T ss_pred             CcChhHccccccCCEEECCCCc-CcccCc--------ccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-cc
Confidence            43  346788899999999854 666543        4467889999999999 67777766677899999999985 57


Q ss_pred             cCCCCCcccccCcceEEEch
Q 040192          345 KKLPLDSNRAKERKIVIRGS  364 (386)
Q Consensus       345 ~~l~~~~~~~~~~l~i~~~~  364 (386)
                      +.++.......+.+.+.+.+
T Consensus       331 ~~~~~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          331 VTLKLSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CCCCCCTTCCCSEEECCSSC
T ss_pred             ceeCchhhccCCEEEcCCCC
Confidence            88775443333555554444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=3e-25  Score=212.03  Aligned_cols=305  Identities=17%  Similarity=0.209  Sum_probs=211.7

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCccccc-CCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENL-SEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+.+.+.++..+|.   +++++++|++++|.+.++ +.. ..+++|++|++++|.....+++..+..+++|++|++++
T Consensus        12 ~~~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           12 GYNAICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TTEEECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            5568888889998887   333899999999999885 333 88999999999998443467666688999999999999


Q ss_pred             Ccccccc-chhhcCCCccCEEEcCCCCCCc-ccHh--hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCc
Q 040192          111 AIRLYSF-PLGISKLISLQHLDLSNTGIAE-LPKE--LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYS  186 (386)
Q Consensus       111 ~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  186 (386)
                      | .+..+ |..++.+++|++|++++|.++. .+..  +..+++|++|++++|......|...+..+++|++|++++|.+.
T Consensus        89 n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           89 N-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             C-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             C-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            9 77755 7788999999999999999874 3443  7889999999999995544446555789999999999998877


Q ss_pred             ccc--CCCcC----------------------------------ccccccc-ceeecCCcccc-----------------
Q 040192          187 YSD--GMIGN----------------------------------GEFEQLC-GFRRSKSLDVS-----------------  212 (386)
Q Consensus       187 ~~~--~~~~l----------------------------------~~L~~L~-~~~~~~~~~~~-----------------  212 (386)
                      ...  .+..+                                  +.|+.|. ..+...+..+.                 
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            651  11111                                  2222222 11110000000                 


Q ss_pred             --------------------ccc--cccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc-
Q 040192          213 --------------------ALA--DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT-  269 (386)
Q Consensus       213 --------------------~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-  269 (386)
                                          .+.  ..++|+.|++++|+... .....+.         .+++|+.|++++| .++..+ 
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~---------~l~~L~~L~Ls~n-~l~~~~~  316 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFS---------HFTDLEQLTLAQN-EINKIDD  316 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-ECTTTTT---------TCTTCCEEECTTS-CCCEECT
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCccccc-cchhhcc---------cCCCCCEEECCCC-cccccCh
Confidence                                000  11356666666654443 2223333         6788999999888 455542 


Q ss_pred             -cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccc-cCCCcCCCCccEEeecCcccCcCC
Q 040192          270 -FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSI-YRKPLPFPHLKEMKVIHCLKLKKL  347 (386)
Q Consensus       270 -~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~c~~L~~l  347 (386)
                       .+..+++|++|++++|. ++.+..       ..+..+++|++|+++++ .+..+ +.....+++|+.|++++ .+++.+
T Consensus       317 ~~~~~l~~L~~L~Ls~N~-l~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~  386 (455)
T 3v47_A          317 NAFWGLTHLLKLNLSQNF-LGSIDS-------RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDT-NQLKSV  386 (455)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCEECG-------GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCSCC
T ss_pred             hHhcCcccCCEEECCCCc-cCCcCh-------hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCC-CccccC
Confidence             46788899999999865 666544       26678899999999999 56655 55677799999999998 478888


Q ss_pred             CCCcccccCcceEEE
Q 040192          348 PLDSNRAKERKIVIR  362 (386)
Q Consensus       348 ~~~~~~~~~~l~i~~  362 (386)
                      |.........++.++
T Consensus       387 ~~~~~~~l~~L~~L~  401 (455)
T 3v47_A          387 PDGIFDRLTSLQKIW  401 (455)
T ss_dssp             CTTTTTTCTTCCEEE
T ss_pred             CHhHhccCCcccEEE
Confidence            876533333444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=1.9e-24  Score=202.41  Aligned_cols=279  Identities=17%  Similarity=0.167  Sum_probs=224.1

Q ss_pred             ccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCcc
Q 040192           51 KWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISL  127 (386)
Q Consensus        51 ~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L  127 (386)
                      .+. +++.++++++.+..+|..  ..+++|++|++++| .+..+++..+..+++|++|++++| .+..+ |..++.+++|
T Consensus        43 ~l~-~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           43 TLN-NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGC-CCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             ccC-CceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCC
Confidence            456 899999999999998875  78999999999999 788887766899999999999999 78877 4568999999


Q ss_pred             CEEEcCCCCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeec
Q 040192          128 QHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRS  206 (386)
Q Consensus       128 ~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~  206 (386)
                      ++|++++|.++.+|.. +..+++|++|++++| .+..++...+..+++|+.|++++|.+... ....++.|+.+.    .
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~----l  193 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHAN----V  193 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEE----C
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccceee----c
Confidence            9999999999999876 488999999999999 45566655589999999999999998876 345556666554    1


Q ss_pred             CCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCC
Q 040192          207 KSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCY  286 (386)
Q Consensus       207 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~  286 (386)
                      .+.....+...++|+.|++++|.... . ...           .+++|+.|++++| .++..+++..+++|+.|++++|.
T Consensus       194 ~~n~l~~~~~~~~L~~L~l~~n~l~~-~-~~~-----------~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~  259 (390)
T 3o6n_A          194 SYNLLSTLAIPIAVEELDASHNSINV-V-RGP-----------VNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE  259 (390)
T ss_dssp             CSSCCSEEECCSSCSEEECCSSCCCE-E-ECC-----------CCSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred             ccccccccCCCCcceEEECCCCeeee-c-ccc-----------ccccccEEECCCC-CCcccHHHcCCCCccEEECCCCc
Confidence            22223445556789999999987654 2 111           5689999999999 67888889999999999999965


Q ss_pred             ccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCCcccccCcceEEEc
Q 040192          287 ALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIRG  363 (386)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~i~~~  363 (386)
                       ++....       ..+..+++|++|+++++ .+..++.....+++|+.|++++| +++.+|...... ..++.++.
T Consensus       260 -l~~~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l-~~L~~L~L  325 (390)
T 3o6n_A          260 -LEKIMY-------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQF-DRLENLYL  325 (390)
T ss_dssp             -CCEEES-------GGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHH-TTCSEEEC
T ss_pred             -CCCcCh-------hHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCcccccc-CcCCEEEC
Confidence             666544       26778999999999999 78888877778999999999996 788877654433 33444433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=2.2e-24  Score=207.30  Aligned_cols=287  Identities=18%  Similarity=0.185  Sum_probs=227.2

Q ss_pred             cccEEEEcCCCCCCCC--cccccccCccEEEecCCcccccCC-C-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192           32 KEEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIENLSE-V-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN  107 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  107 (386)
                      ....+++.+..+.+++  .+..++ +|++|++++|.+..+.. . ..+++|++|++++| .+..++...+..+++|++|+
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred             CCcEEECCCCccceECHhHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence            4678999999998874  478888 99999999999998633 3 89999999999999 88888887789999999999


Q ss_pred             ccCCcccccc-chhhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCC
Q 040192          108 LSGAIRLYSF-PLGISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGY  185 (386)
Q Consensus       108 l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  185 (386)
                      +++| .+..+ +..+..+++|+.|++++|.+..++ ..+..+++|+.|++++| .+..++...+..+++|+.|++++|.+
T Consensus       111 Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          111 ISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             CTTS-CCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             CCCC-ccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcC
Confidence            9999 77755 667899999999999999998664 57889999999999999 66777776689999999999999988


Q ss_pred             ccc--cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCC
Q 040192          186 SYS--DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYC  262 (386)
Q Consensus       186 ~~~--~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  262 (386)
                      ...  ..+..++.|+.|. ..+...+..+.......+|+.|++++|+... ++...+.         .+++|+.|++++|
T Consensus       189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~---------~l~~L~~L~Ls~n  258 (477)
T 2id5_A          189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVR---------HLVYLRFLNLSYN  258 (477)
T ss_dssp             CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHHHT---------TCTTCCEEECCSS
T ss_pred             cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-cCHHHhc---------CccccCeeECCCC
Confidence            775  2355666676665 2222222223333344589999999996653 4444444         7899999999999


Q ss_pred             CCCCccc--cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCC-CcCCCCccEEeec
Q 040192          263 KELKDLT--FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRK-PLPFPHLKEMKVI  339 (386)
Q Consensus       263 ~~l~~~~--~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~  339 (386)
                      . ++.++  .+..+++|+.|+|++|. +..+..       ..+..+++|++|+|+++ .+..++.. ...+++|+.|+++
T Consensus       259 ~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          259 P-ISTIEGSMLHELLRLQEIQLVGGQ-LAVVEP-------YAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILD  328 (477)
T ss_dssp             C-CCEECTTSCTTCTTCCEEECCSSC-CSEECT-------TTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECC
T ss_pred             c-CCccChhhccccccCCEEECCCCc-cceECH-------HHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEcc
Confidence            4 66553  36788999999999955 766655       37788999999999999 67776643 4568999999998


Q ss_pred             Ccc
Q 040192          340 HCL  342 (386)
Q Consensus       340 ~c~  342 (386)
                      +++
T Consensus       329 ~N~  331 (477)
T 2id5_A          329 SNP  331 (477)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2e-24  Score=213.08  Aligned_cols=294  Identities=20%  Similarity=0.251  Sum_probs=172.3

Q ss_pred             cEEEEcCCCCCCCCc--ccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192           34 EHLVYAGAGLSETPD--VRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS  109 (386)
Q Consensus        34 ~~l~~~~~~l~~~p~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  109 (386)
                      ..+.+.+..+..+|.  +..++ +|+.|++++|.+.+++.  ...+++|++|++++| .+..+++..++.+++|++|+++
T Consensus        54 ~~l~l~~~~l~~lp~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           54 KIVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             SEEEESSCEESEECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             eEEEeeCCCCCCcCHHHHccCC-CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEee
Confidence            444455555555543  34445 55666666655555432  255556666666555 4555554445555666666665


Q ss_pred             CCccccccchh-hcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192          110 GAIRLYSFPLG-ISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       110 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      +| .+..+|.. ++.+++|++|++++|.++.++. .++.+++|+.|++++| .+..++   ++.+++|+.|++++|.+..
T Consensus       132 ~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          132 RN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             SS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred             CC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccCcccc
Confidence            55 55555433 3555566666666655554432 3555555666666555 233332   3445555555555554444


Q ss_pred             ccCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCC
Q 040192          188 SDGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELK  266 (386)
Q Consensus       188 ~~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  266 (386)
                      ..   ....|+.|. ..+.+... +  ....++|+.|++++|....   ..++.         .+++|+.|++++| .++
T Consensus       207 l~---~~~~L~~L~ls~n~l~~~-~--~~~~~~L~~L~L~~n~l~~---~~~l~---------~l~~L~~L~Ls~N-~l~  267 (597)
T 3oja_B          207 LA---IPIAVEELDASHNSINVV-R--GPVNVELTILKLQHNNLTD---TAWLL---------NYPGLVEVDLSYN-ELE  267 (597)
T ss_dssp             EE---CCTTCSEEECCSSCCCEE-E--CSCCSCCCEEECCSSCCCC---CGGGG---------GCTTCSEEECCSS-CCC
T ss_pred             cc---CCchhheeeccCCccccc-c--cccCCCCCEEECCCCCCCC---Chhhc---------cCCCCCEEECCCC-ccC
Confidence            31   122233332 11111110 0  1113578888888886554   23333         7899999999998 455


Q ss_pred             cc--ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccC
Q 040192          267 DL--TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKL  344 (386)
Q Consensus       267 ~~--~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L  344 (386)
                      ..  ..++.+++|+.|+|++|. +..++.        ....+|+|++|+|++| .+..++.....+++|+.|++++| .+
T Consensus       268 ~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~--------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l  336 (597)
T 3oja_B          268 KIMYHPFVKMQRLERLYISNNR-LVALNL--------YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SI  336 (597)
T ss_dssp             EEESGGGTTCSSCCEEECTTSC-CCEEEC--------SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CC
T ss_pred             CCCHHHhcCccCCCEEECCCCC-CCCCCc--------ccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CC
Confidence            53  357888999999999854 666543        5567899999999999 67777777777999999999995 57


Q ss_pred             cCCCCCcccccCcceEEEch
Q 040192          345 KKLPLDSNRAKERKIVIRGS  364 (386)
Q Consensus       345 ~~l~~~~~~~~~~l~i~~~~  364 (386)
                      ..++.......+.+.+.+.|
T Consensus       337 ~~~~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          337 VTLKLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CCCCCCTTCCCSEEECCSSC
T ss_pred             CCcChhhcCCCCEEEeeCCC
Confidence            77775544333555554444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=8.1e-24  Score=202.72  Aligned_cols=280  Identities=16%  Similarity=0.230  Sum_probs=154.2

Q ss_pred             cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192           32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA  111 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  111 (386)
                      +...+.+.+.++..+|.+..++ +|++|++++|.+.+++....+++|++|++++| .+..+++  ++.+++|++|++++|
T Consensus        47 ~l~~L~l~~~~i~~l~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n  122 (466)
T 1o6v_A           47 QVTTLQADRLGIKSIDGVEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNN  122 (466)
T ss_dssp             TCCEEECCSSCCCCCTTGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS
T ss_pred             cccEEecCCCCCccCcchhhhc-CCCEEECCCCccCCchhhhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCC
Confidence            3566777777787888777777 88888888888888766777888888888887 6666655  677888888888877


Q ss_pred             ccccccchhhcCCCccCEEEcCCCCCCcccH--------------------hhhccCCCCEEEccCCccccccchhhhcC
Q 040192          112 IRLYSFPLGISKLISLQHLDLSNTGIAELPK--------------------ELNALVNLTCLNLEETWRLTVIPRRLISS  171 (386)
Q Consensus       112 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--------------------~~~~l~~L~~L~l~~~~~~~~~~~~~l~~  171 (386)
                       .+..++. +..+++|++|++++|.+..++.                    .+..+++|+.|++++| .+..++.  +..
T Consensus       123 -~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--l~~  197 (466)
T 1o6v_A          123 -QITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISV--LAK  197 (466)
T ss_dssp             -CCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGG
T ss_pred             -CCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChh--hcc
Confidence             6666654 6677777777777776665432                    1333444555555554 2333332  444


Q ss_pred             CCCCcEEEEeccCCccccCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccc---------
Q 040192          172 FSSLHVLRIFGSGYSYSDGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSV---------  241 (386)
Q Consensus       172 l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---------  241 (386)
                      +++|+.|++++|.+.+......+++|+.|. ..+...+  ...+..+++|+.|++++|..... ..  +..         
T Consensus       198 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l  272 (466)
T 1o6v_A          198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL-AP--LSGLTKLTELKL  272 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-GG--GTTCTTCSEEEC
T ss_pred             CCCCCEEEecCCcccccccccccCCCCEEECCCCCccc--chhhhcCCCCCEEECCCCccccc-hh--hhcCCCCCEEEC
Confidence            555555555555444432233333333333 1111111  12333444555555554433221 11  110         


Q ss_pred             -------cccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeee
Q 040192          242 -------VQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCF  314 (386)
Q Consensus       242 -------~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  314 (386)
                             ...   ...+++|+.|++++| .++.++.++.+++|+.|++++|. +.+..         .+..+++|++|++
T Consensus       273 ~~n~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~l  338 (466)
T 1o6v_A          273 GANQISNISP---LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDIS---------PVSSLTKLQRLFF  338 (466)
T ss_dssp             CSSCCCCCGG---GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCCG---------GGGGCTTCCEEEC
T ss_pred             CCCccCcccc---ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc-CCCch---------hhccCccCCEeEC
Confidence                   000   003444555555544 33444334445555555555543 33221         2345566666666


Q ss_pred             ccccccccccCCCcCCCCccEEeecCc
Q 040192          315 SYLPNLKSIYRKPLPFPHLKEMKVIHC  341 (386)
Q Consensus       315 ~~~~~l~~~~~~~~~~~~L~~L~i~~c  341 (386)
                      ++| .+..++ ....+++|+.|++++|
T Consensus       339 ~~n-~l~~~~-~l~~l~~L~~L~l~~n  363 (466)
T 1o6v_A          339 YNN-KVSDVS-SLANLTNINWLSAGHN  363 (466)
T ss_dssp             CSS-CCCCCG-GGTTCTTCCEEECCSS
T ss_pred             CCC-ccCCch-hhccCCCCCEEeCCCC
Confidence            666 444443 3455677777777765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=8.7e-25  Score=217.07  Aligned_cols=339  Identities=12%  Similarity=0.128  Sum_probs=233.1

Q ss_pred             cCCCeeechhHHH---hhhccccc-cccEEEEcCCCCCC-C-CcccccccCccEEEecCCcc------------------
Q 040192           11 ETWKCTKEAMLPR---MSSDIEEE-KEEHLVYAGAGLSE-T-PDVRKWEKNVRRLSLMENQI------------------   66 (386)
Q Consensus        11 ~~~~~~~~d~~~~---~~~~~~~~-~~~~l~~~~~~l~~-~-p~~~~~~~~L~~L~l~~~~~------------------   66 (386)
                      ..|... .|++.|   .++.|... ....+.+.+.++.+ + +++..++ +|++|++++|.+                  
T Consensus        58 ~~W~~~-~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~-~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~  135 (636)
T 4eco_A           58 ANWNFN-KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLT-ELEVLALGSHGEKVNERLFGPKGISANMSD  135 (636)
T ss_dssp             CCCCCS-SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCT-TCCEEESCCGGGGGTCCSBSTTSBCTTCCH
T ss_pred             CCCCCC-CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCc-cceEEECcCCccccCCccccccccccCchH
Confidence            357654 788999   99999653 45567778888764 3 4588899 999999998843                  


Q ss_pred             ------------------------------------------------------------cccCCC-CCCCCCcEEeccc
Q 040192           67 ------------------------------------------------------------ENLSEV-PTCPYLRTLFLNN   85 (386)
Q Consensus        67 ------------------------------------------------------------~~~~~~-~~~~~L~~L~l~~   85 (386)
                                                                                  +++|.. ..+++|++|++++
T Consensus       136 ~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~  215 (636)
T 4eco_A          136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGN  215 (636)
T ss_dssp             HHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEES
T ss_pred             HHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcC
Confidence                                                                        235544 7899999999999


Q ss_pred             CcCCCc------------------CChhhhc--CCCcCceecccCCccccccchhhcCCCccCEEEcCCCC-CCc--ccH
Q 040192           86 NAPLRR------------------IDSGFFQ--SMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTG-IAE--LPK  142 (386)
Q Consensus        86 ~~~~~~------------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~--l~~  142 (386)
                      | .+..                  +|.. ++  ++++|++|++++|...+.+|..++++++|++|++++|. ++.  +|.
T Consensus       216 n-~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~  293 (636)
T 4eco_A          216 S-PFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD  293 (636)
T ss_dssp             C-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred             C-ccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH
Confidence            9 5666                  7776 67  89999999999994455779899999999999999998 884  888


Q ss_pred             hhhcc------CCCCEEEccCCccccccch--hhhcCCCCCcEEEEeccCCc-cccCCCcCccccccc-ceeecCCcccc
Q 040192          143 ELNAL------VNLTCLNLEETWRLTVIPR--RLISSFSSLHVLRIFGSGYS-YSDGMIGNGEFEQLC-GFRRSKSLDVS  212 (386)
Q Consensus       143 ~~~~l------~~L~~L~l~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~-~~~~~~~~~~~  212 (386)
                      .++.+      ++|+.|++++|. +..+|.  . ++.+++|+.|++++|.+. ....+..+++|+.|. ..+.+. ..+.
T Consensus       294 ~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~  370 (636)
T 4eco_A          294 DWQALADAPVGEKIQIIYIGYNN-LKTFPVETS-LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPA  370 (636)
T ss_dssp             HHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHH-HTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCT
T ss_pred             HHHhhhccccCCCCCEEECCCCc-CCccCchhh-hccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccH
Confidence            88776      999999999994 458887  5 899999999999999888 334444555666665 222222 3345


Q ss_pred             ccccccC-CcEEEeeccCCccchhcccccccc-----------------cCcccc-------ccCcccEEEecCCCCCCc
Q 040192          213 ALADLKR-LNRLKIAECYGLAELKMDYKSVVQ-----------------NTGQSF-------VFHSLKKFQISYCKELKD  267 (386)
Q Consensus       213 ~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~-------~~~~L~~L~l~~~~~l~~  267 (386)
                      .+..+++ |+.|++++|+.. .++. .+....                 .+..+.       .+++|+.|++++| .++.
T Consensus       371 ~l~~l~~~L~~L~Ls~N~l~-~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~  447 (636)
T 4eco_A          371 NFCGFTEQVENLSFAHNKLK-YIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISK  447 (636)
T ss_dssp             TSEEECTTCCEEECCSSCCS-SCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCS
T ss_pred             hhhhhcccCcEEEccCCcCc-ccch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCc
Confidence            5667777 888888877654 2322 211000                 000000       2346666666666 3444


Q ss_pred             ccc--ccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCc--CCCCccEEeecCccc
Q 040192          268 LTF--LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPL--PFPHLKEMKVIHCLK  343 (386)
Q Consensus       268 ~~~--l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~~L~~L~i~~c~~  343 (386)
                      ++.  ...+++|+.|++++|. ++.++.............+++|++|+++++ .+..++....  .+++|+.|+++++ +
T Consensus       448 lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~  524 (636)
T 4eco_A          448 FPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-S  524 (636)
T ss_dssp             CCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-C
T ss_pred             CCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCC-C
Confidence            432  3457778888888754 555544210000000122348999999998 6777876665  7899999999985 7


Q ss_pred             CcCCCCCcccccCcceEEEc
Q 040192          344 LKKLPLDSNRAKERKIVIRG  363 (386)
Q Consensus       344 L~~l~~~~~~~~~~l~i~~~  363 (386)
                      ++.+|...... ..++.++.
T Consensus       525 l~~ip~~~~~l-~~L~~L~L  543 (636)
T 4eco_A          525 FSKFPTQPLNS-STLKGFGI  543 (636)
T ss_dssp             CSSCCCGGGGC-SSCCEEEC
T ss_pred             CCCcChhhhcC-CCCCEEEC
Confidence            77788776655 56666655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=3.1e-23  Score=203.40  Aligned_cols=143  Identities=29%  Similarity=0.351  Sum_probs=119.1

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+++.+.++.++|... .+ ++++|++++|.+..++.  ...+++|++|++++| .+..+++..+..+++|++|++++
T Consensus        33 ~~~l~ls~~~L~~ip~~~-~~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           33 ESMVDYSNRNLTHVPKDL-PP-RTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CCEEECTTSCCCSCCTTS-CT-TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEcCCCCCccCCCCC-CC-CcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCC
Confidence            588999999999998622 14 89999999999999764  389999999999999 88888766689999999999999


Q ss_pred             CccccccchhhcCCCccCEEEcCCCCCCccc--HhhhccCCCCEEEccCCccccccchhhhcCCCCC--cEEEEeccCC
Q 040192          111 AIRLYSFPLGISKLISLQHLDLSNTGIAELP--KELNALVNLTCLNLEETWRLTVIPRRLISSFSSL--HVLRIFGSGY  185 (386)
Q Consensus       111 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~  185 (386)
                      | .+..+|..  .+++|++|++++|.++.++  ..++.+++|++|++++|.. ....   +..+++|  +.|++++|.+
T Consensus       110 N-~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~~~---~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          110 N-RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQLD---LLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             S-CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CTTT---TGGGTTSCEEEEEEEESSC
T ss_pred             C-cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc-ccCc---hhhhhhceeeEEEeecccc
Confidence            9 88888866  8999999999999998754  7899999999999999844 3321   4444555  8888888766

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=1.6e-23  Score=200.66  Aligned_cols=282  Identities=17%  Similarity=0.280  Sum_probs=181.6

Q ss_pred             cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192           32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA  111 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  111 (386)
                      ..+.+.+.+..+.++|.+..++ +|++|++++|.+..++....+++|++|++++| .+..+++  +..+++|++|++++|
T Consensus        69 ~L~~L~Ls~n~l~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n  144 (466)
T 1o6v_A           69 NLTQINFSNNQLTDITPLKNLT-KLVDILMNNNQIADITPLANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSN  144 (466)
T ss_dssp             TCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEEEEEE
T ss_pred             CCCEEECCCCccCCchhhhccc-cCCEEECCCCccccChhhcCCCCCCEEECCCC-CCCCChH--HcCCCCCCEEECCCC
Confidence            3667777777777776677777 77777777777777665677777777777777 5555544  566666666666665


Q ss_pred             ccccccch--------------------hhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcC
Q 040192          112 IRLYSFPL--------------------GISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISS  171 (386)
Q Consensus       112 ~~~~~~~~--------------------~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~  171 (386)
                       .+..++.                    .+..+++|+.|++++|.++.++ .+..+++|+.|++++|. +..++.  ++.
T Consensus       145 -~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--~~~  219 (466)
T 1o6v_A          145 -TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQ-ISDITP--LGI  219 (466)
T ss_dssp             -EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGG
T ss_pred             -ccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCc-cccccc--ccc
Confidence             4433221                    2445566666777766666553 35556666666666663 233332  444


Q ss_pred             CCCCcEEEEeccCCccccCC----------------------CcCccccccc-ceeecCCccccccccccCCcEEEeecc
Q 040192          172 FSSLHVLRIFGSGYSYSDGM----------------------IGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAEC  228 (386)
Q Consensus       172 l~~L~~L~l~~~~~~~~~~~----------------------~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~  228 (386)
                      +++|+.|++++|.+......                      ..++.|+.|. ..+...+.  ..+..+++|+.|++++|
T Consensus       220 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n  297 (466)
T 1o6v_A          220 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNEN  297 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSS
T ss_pred             cCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcc--ccccCCCccCeEEcCCC
Confidence            55555555555544443333                      3333333333 12222221  12556677777777777


Q ss_pred             CCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccc
Q 040192          229 YGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQ  308 (386)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~  308 (386)
                      +... ...  +.         .+++|+.|++++| .++..+.+..+++|+.|++++|. +++..         .+..+++
T Consensus       298 ~l~~-~~~--~~---------~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~---------~l~~l~~  354 (466)
T 1o6v_A          298 QLED-ISP--IS---------NLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNK-VSDVS---------SLANLTN  354 (466)
T ss_dssp             CCSC-CGG--GG---------GCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSC-CCCCG---------GGTTCTT
T ss_pred             cccC-chh--hc---------CCCCCCEEECcCC-cCCCchhhccCccCCEeECCCCc-cCCch---------hhccCCC
Confidence            5543 222  22         7899999999999 57777668899999999999975 66652         5578899


Q ss_pred             cceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCC
Q 040192          309 FHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLD  350 (386)
Q Consensus       309 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~  350 (386)
                      |+.|++++| .+..+.. ...+++|+.|++++| .++.+|..
T Consensus       355 L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~~~~~p~~  393 (466)
T 1o6v_A          355 INWLSAGHN-QISDLTP-LANLTRITQLGLNDQ-AWTNAPVN  393 (466)
T ss_dssp             CCEEECCSS-CCCBCGG-GTTCTTCCEEECCCE-EEECCCBC
T ss_pred             CCEEeCCCC-ccCccch-hhcCCCCCEEeccCC-cccCCchh
Confidence            999999999 5555543 677999999999996 56666544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=1.3e-23  Score=207.83  Aligned_cols=152  Identities=22%  Similarity=0.256  Sum_probs=117.6

Q ss_pred             cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192           32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS  109 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  109 (386)
                      ....+.+.+.++..+|.-  +++++++|++++|.+.+++..  ..+++|++|++++| .+..+++..++++++|++|+++
T Consensus        12 ~~~~~~c~~~~l~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           12 PNITYQCMDQKLSKVPDD--IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TTTEEECTTSCCSSCCTT--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECT
T ss_pred             CCCceEccCCCcccCCCC--CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECC
Confidence            355788888888888762  223788888888888886553  78888888888888 7777766667888888888888


Q ss_pred             CCcccccc-chhhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCcccc-ccchhhhcCCCCCcEEEEeccCCc
Q 040192          110 GAIRLYSF-PLGISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLT-VIPRRLISSFSSLHVLRIFGSGYS  186 (386)
Q Consensus       110 ~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~  186 (386)
                      +| .+..+ |..++++++|++|++++|.+..++ ..++.+++|++|++++|.... .+|.. ++++++|++|++++|.+.
T Consensus        89 ~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A           89 GN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             TC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred             CC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcce
Confidence            88 67766 677888888888888888887666 567888888888888885433 45664 888888888888888776


Q ss_pred             cc
Q 040192          187 YS  188 (386)
Q Consensus       187 ~~  188 (386)
                      ..
T Consensus       167 ~~  168 (606)
T 3vq2_A          167 TI  168 (606)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1e-23  Score=208.02  Aligned_cols=279  Identities=17%  Similarity=0.173  Sum_probs=222.2

Q ss_pred             ccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc-hhhcCCCcc
Q 040192           51 KWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP-LGISKLISL  127 (386)
Q Consensus        51 ~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L  127 (386)
                      .+. +++.++++++.+..+|..  ..+++|++|++++| .+..+++..++.+++|++|++++| .+..++ ..++.+++|
T Consensus        49 ~l~-~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           49 TLN-NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             GGC-CCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             cCC-CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCC
Confidence            456 899999999999998875  78999999999999 788777766899999999999999 788774 567899999


Q ss_pred             CEEEcCCCCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeec
Q 040192          128 QHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRS  206 (386)
Q Consensus       128 ~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~  206 (386)
                      ++|++++|.++.+|.. ++.+++|+.|++++| .+..+++..++.+++|+.|++++|.+... ....++.|+.+.    .
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~----l  199 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHAN----V  199 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEE----C
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc-Chhhhhhhhhhh----c
Confidence            9999999999998866 589999999999999 45555554589999999999999988876 355566666554    2


Q ss_pred             CCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCC
Q 040192          207 KSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCY  286 (386)
Q Consensus       207 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~  286 (386)
                      .+.....+..+++|+.|++++|.... .+ ..           .+++|+.|++++| .++.+++++.+++|+.|+|++|.
T Consensus       200 ~~n~l~~l~~~~~L~~L~ls~n~l~~-~~-~~-----------~~~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~Ls~N~  265 (597)
T 3oja_B          200 SYNLLSTLAIPIAVEELDASHNSINV-VR-GP-----------VNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE  265 (597)
T ss_dssp             CSSCCSEEECCTTCSEEECCSSCCCE-EE-CS-----------CCSCCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred             ccCccccccCCchhheeeccCCcccc-cc-cc-----------cCCCCCEEECCCC-CCCCChhhccCCCCCEEECCCCc
Confidence            22233445667789999999986543 21 11           4579999999999 67888889999999999999965


Q ss_pred             ccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCCcccccCcceEEEc
Q 040192          287 ALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIRG  363 (386)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~i~~~  363 (386)
                       +.....       ..+..+++|++|+|+++ .+..++.....+++|+.|++++| .++.+|...... ..++.++.
T Consensus       266 -l~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l-~~L~~L~L  331 (597)
T 3oja_B          266 -LEKIMY-------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQF-DRLENLYL  331 (597)
T ss_dssp             -CCEEES-------GGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHH-TTCSEEEC
T ss_pred             -cCCCCH-------HHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCcccccC-CCCCEEEC
Confidence             666544       26788999999999999 78888877778999999999996 677777655433 34444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=1.1e-23  Score=213.49  Aligned_cols=328  Identities=13%  Similarity=0.162  Sum_probs=214.0

Q ss_pred             hhhcccc-ccccEEEEcCCCCCC-C-CcccccccCccEEEe-cCCcc---------------------------------
Q 040192           24 MSSDIEE-EKEEHLVYAGAGLSE-T-PDVRKWEKNVRRLSL-MENQI---------------------------------   66 (386)
Q Consensus        24 ~~~~~~~-~~~~~l~~~~~~l~~-~-p~~~~~~~~L~~L~l-~~~~~---------------------------------   66 (386)
                      .++.|.. .....+.+.+.++.+ + |.+..++ +|+.|++ ++|.+                                 
T Consensus       315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~-~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~  393 (876)
T 4ecn_A          315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLT-ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD  393 (876)
T ss_dssp             TTEEECTTSCEEEEECTTTCCEEEECGGGGGCT-TCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTC
T ss_pred             CceEecCCCCEEEEECccCCCCCcCchHHhccc-cceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhc
Confidence            7888864 245567778888764 3 3588888 9999999 55532                                 


Q ss_pred             --------------------------------------------cccCCC-CCCCCCcEEecccCcCCCc----------
Q 040192           67 --------------------------------------------ENLSEV-PTCPYLRTLFLNNNAPLRR----------   91 (386)
Q Consensus        67 --------------------------------------------~~~~~~-~~~~~L~~L~l~~~~~~~~----------   91 (386)
                                                                  .++|.. ..+++|+.|++++| .+..          
T Consensus       394 ~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~  472 (876)
T 4ecn_A          394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDA  472 (876)
T ss_dssp             CCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCT
T ss_pred             cCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCC-cCCCCccccccccc
Confidence                                                        124443 77889999999998 5655          


Q ss_pred             --------CChhhhc--CCCcCceecccCCccccccchhhcCCCccCEEEcCCCC-CCc--ccHhhhccC-------CCC
Q 040192           92 --------IDSGFFQ--SMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTG-IAE--LPKELNALV-------NLT  151 (386)
Q Consensus        92 --------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~--l~~~~~~l~-------~L~  151 (386)
                              +|.. ++  .+++|++|++++|...+.+|..++++++|+.|++++|. ++.  +|..++.++       +|+
T Consensus       473 s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~  551 (876)
T 4ecn_A          473 NSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ  551 (876)
T ss_dssp             TSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC
T ss_pred             ccccccccCChh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc
Confidence                    7776 45  89999999999884455778888999999999999997 774  787776665       899


Q ss_pred             EEEccCCccccccch-hhhcCCCCCcEEEEeccCCccccCCCcCccccccc-ceeecCCccccccccccC-CcEEEeecc
Q 040192          152 CLNLEETWRLTVIPR-RLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLC-GFRRSKSLDVSALADLKR-LNRLKIAEC  228 (386)
Q Consensus       152 ~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~-L~~L~l~~~  228 (386)
                      .|++++|. +..+|. ..++.+++|+.|++++|.+.....+..+++|+.|. ..+.+. ..+..+..+++ |+.|++++|
T Consensus       552 ~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          552 IFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             EEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred             EEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence            99999994 448887 23888999999999998887555556666676666 333333 34556777777 888888887


Q ss_pred             CCccchhccccccccc-----------------Ccc-----ccccCcccEEEecCCCCCCcccc--ccCCCCCcEEeecC
Q 040192          229 YGLAELKMDYKSVVQN-----------------TGQ-----SFVFHSLKKFQISYCKELKDLTF--LIFAPNLKSIEVDS  284 (386)
Q Consensus       229 ~~~~~~~~~~~~~~~~-----------------~~~-----~~~~~~L~~L~l~~~~~l~~~~~--l~~l~~L~~L~l~~  284 (386)
                      +.. .++ ..+.....                 +.+     ...+++|+.|++++| .++.++.  ...+++|+.|+|++
T Consensus       630 ~L~-~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~  706 (876)
T 4ecn_A          630 KLK-YIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSN  706 (876)
T ss_dssp             CCC-SCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCS
T ss_pred             CCC-cCc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCC
Confidence            654 232 22110000                 000     001236666666666 3444432  23577888888887


Q ss_pred             CCccchhhccCcccccCCCCcccccceeeeccccccccccCCCc--CCCCccEEeecCcccCcCCCCCcccccCcceEEE
Q 040192          285 CYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPL--PFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIR  362 (386)
Q Consensus       285 c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~i~~  362 (386)
                      |. +..++.............+++|++|+|++| .+..++....  .+++|+.|+++++ +++.+|...... ..++.++
T Consensus       707 N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L-~~L~~L~  782 (876)
T 4ecn_A          707 NL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNS-SQLKAFG  782 (876)
T ss_dssp             CC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGC-TTCCEEE
T ss_pred             Cc-CCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcC-CCCCEEE
Confidence            54 555544211000001223447888888887 6667766554  6788888888774 666676655544 4444443


Q ss_pred             c
Q 040192          363 G  363 (386)
Q Consensus       363 ~  363 (386)
                      .
T Consensus       783 L  783 (876)
T 4ecn_A          783 I  783 (876)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=2.8e-23  Score=197.92  Aligned_cols=259  Identities=17%  Similarity=0.153  Sum_probs=183.3

Q ss_pred             cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192           32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA  111 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  111 (386)
                      ....+.+.+..+.++|.+..++ +|++|++++|.+.+++ ...+++|++|++++| .+..++   ++.+++|++|++++|
T Consensus        43 ~L~~L~Ls~n~l~~~~~l~~l~-~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           43 TLTSLDCHNSSITDMTGIEKLT-GLTKLICTSNNITTLD-LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTN  116 (457)
T ss_dssp             TCCEEECCSSCCCCCTTGGGCT-TCSEEECCSSCCSCCC-CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECCSS
T ss_pred             CCCEEEccCCCcccChhhcccC-CCCEEEccCCcCCeEc-cccCCCCCEEECcCC-CCceee---cCCCCcCCEEECCCC
Confidence            3678888998999888888888 9999999999998875 688999999999999 677664   678999999999999


Q ss_pred             ccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCC
Q 040192          112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGM  191 (386)
Q Consensus       112 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  191 (386)
                       .+..++  ++.+++|++|++++|.++.++  ++.+++|+.|++++|..++.++   +..+++|+.|++++|.+.+.. +
T Consensus       117 -~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~-l  187 (457)
T 3bz5_A          117 -KLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD-V  187 (457)
T ss_dssp             -CCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC-C
T ss_pred             -cCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec-c
Confidence             787775  788999999999999998875  7788999999999997666663   778899999999999888763 5


Q ss_pred             CcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc
Q 040192          192 IGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF  270 (386)
Q Consensus       192 ~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  270 (386)
                      ..++.|+.+. ..+.+.+.   .+..+++|+.|++++|+... ++   +.         .+++|+.|++++| .++.++ 
T Consensus       188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~---------~l~~L~~L~l~~N-~l~~~~-  249 (457)
T 3bz5_A          188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VT---------PLTQLTYFDCSVN-PLTELD-  249 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CT---------TCTTCSEEECCSS-CCSCCC-
T ss_pred             ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---cc---------ccCCCCEEEeeCC-cCCCcC-
Confidence            5666666665 33333332   36677888888888886554 32   22         6778888888877 455443 


Q ss_pred             ccCCCCCcEEeecCCCccchhhccCcccc-cCCCCcccccceeeecccccccccc
Q 040192          271 LIFAPNLKSIEVDSCYALEEIVSDVPEVM-MGNLNPFAQFHFLCFSYLPNLKSIY  324 (386)
Q Consensus       271 l~~l~~L~~L~l~~c~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~  324 (386)
                      .+.+++|+.|+++++ .++.+........ ......+++|+.|++++|..+..++
T Consensus       250 ~~~l~~L~~L~l~~n-~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          250 VSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             CTTCTTCCEEECTTC-CCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEE
T ss_pred             HHHCCCCCEEeccCC-CCCEEECCCCccCCcccccccccCCEEECCCCcccceec
Confidence            344555555544432 2333221100000 0112345666666666665544444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.92  E-value=7.6e-24  Score=207.14  Aligned_cols=161  Identities=21%  Similarity=0.260  Sum_probs=119.9

Q ss_pred             EEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcc
Q 040192           36 LVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR  113 (386)
Q Consensus        36 l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  113 (386)
                      .++.+.++..+|... .+ ++++|++++|.+.+++.  ...+++|++|++++| .+..+++..++.+++|++|++++| .
T Consensus        10 c~~~~~~l~~ip~~~-~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~   85 (549)
T 2z81_A           10 CDGRSRSFTSIPSGL-TA-AMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN-H   85 (549)
T ss_dssp             EECTTSCCSSCCSCC-CT-TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-C
T ss_pred             EECCCCccccccccC-CC-CccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCC-c
Confidence            455666777777622 24 78899999888887543  378888999999888 777776666788888999999888 7


Q ss_pred             ccccch-hhcCCCccCEEEcCCCCCCc--ccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc--
Q 040192          114 LYSFPL-GISKLISLQHLDLSNTGIAE--LPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS--  188 (386)
Q Consensus       114 ~~~~~~-~~~~l~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--  188 (386)
                      +..+++ .++.+++|++|++++|.++.  .|..++.+++|++|++++|..++.++...+..+++|++|++++|.+.+.  
T Consensus        86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A           86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence            776654 48888889999998888874  4567788888999998888667777755588888888888888887653  


Q ss_pred             cCCCcCcccccc
Q 040192          189 DGMIGNGEFEQL  200 (386)
Q Consensus       189 ~~~~~l~~L~~L  200 (386)
                      ..+..+++|+.+
T Consensus       166 ~~l~~l~~L~~L  177 (549)
T 2z81_A          166 QSLKSIRDIHHL  177 (549)
T ss_dssp             TTTTTCSEEEEE
T ss_pred             hhhhccccCceE
Confidence            233444444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=4.9e-23  Score=211.06  Aligned_cols=193  Identities=19%  Similarity=0.217  Sum_probs=145.6

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC-C-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE-V-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+++.+.++..+|.   +++++++|++++|.+..+.. . ..+++|++|++++|.....+++..++++++|++|++++
T Consensus         6 ~~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            6 GRIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             TEEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             ceEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            5678899999999997   44499999999999998543 3 89999999999999666777666689999999999999


Q ss_pred             Ccccccc-chhhcCCCccCEEEcCCCCCCc-ccHh--hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCc
Q 040192          111 AIRLYSF-PLGISKLISLQHLDLSNTGIAE-LPKE--LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYS  186 (386)
Q Consensus       111 ~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  186 (386)
                      | .+..+ |..++++++|++|++++|.++. +|..  ++.+++|++|++++|......+...++++++|++|++++|.+.
T Consensus        83 N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           83 S-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             C-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             C-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            9 77765 7889999999999999999984 5544  8899999999999995544444334899999999999999887


Q ss_pred             cc--cCCCcC--ccccccc-ceeecCCccccccccccC------CcEEEeeccC
Q 040192          187 YS--DGMIGN--GEFEQLC-GFRRSKSLDVSALADLKR------LNRLKIAECY  229 (386)
Q Consensus       187 ~~--~~~~~l--~~L~~L~-~~~~~~~~~~~~l~~~~~------L~~L~l~~~~  229 (386)
                      ..  ..+..+  ++|+.+. ..+...+..+..+..+++      |+.|++++|.
T Consensus       162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  215 (844)
T 3j0a_A          162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG  215 (844)
T ss_dssp             CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred             eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence            65  122222  4455444 222333333333333333      7777777664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=2.9e-24  Score=194.97  Aligned_cols=250  Identities=17%  Similarity=0.208  Sum_probs=157.1

Q ss_pred             CccEEEecCCcccc---cCCC-CCCCCCcEEeccc-CcCCCcCChhhhcCCCcCceecccCCcccc-ccchhhcCCCccC
Q 040192           55 NVRRLSLMENQIEN---LSEV-PTCPYLRTLFLNN-NAPLRRIDSGFFQSMPRLNVLNLSGAIRLY-SFPLGISKLISLQ  128 (386)
Q Consensus        55 ~L~~L~l~~~~~~~---~~~~-~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~  128 (386)
                      ++++|+++++.+.+   +|.. ..+++|++|++++ |...+.+|.. ++.+++|++|++++| .+. .+|..+..+++|+
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCC
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCC
Confidence            57777777777764   4443 6777777777774 5233345544 677777777777777 555 5677777777777


Q ss_pred             EEEcCCCCCC-cccHhhhccCCCCEEEccCCccccccchhhhcCCC-CCcEEEEeccCCccccCCCcCcccccccceeec
Q 040192          129 HLDLSNTGIA-ELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS-SLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRS  206 (386)
Q Consensus       129 ~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~  206 (386)
                      +|++++|.++ .+|..+..+++|++|++++|.....+|.. +..++ +|+.|++++|.+.+.                  
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~------------------  189 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGK------------------  189 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEE------------------
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeecc------------------
Confidence            7777777776 66677777777777777777554466665 66666 777777777766533                  


Q ss_pred             CCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCC
Q 040192          207 KSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCY  286 (386)
Q Consensus       207 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~  286 (386)
                         .+..+..++ |+.|++++|+.... ....+.         .+++|+.|++++|.....++.+..+++|++|++++|.
T Consensus       190 ---~~~~~~~l~-L~~L~Ls~N~l~~~-~~~~~~---------~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~  255 (313)
T 1ogq_A          190 ---IPPTFANLN-LAFVDLSRNMLEGD-ASVLFG---------SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             ---CCGGGGGCC-CSEEECCSSEEEEC-CGGGCC---------TTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred             ---CChHHhCCc-ccEEECcCCcccCc-CCHHHh---------cCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence               122334444 77777777654432 223333         5677777777777433344555666777777777754


Q ss_pred             ccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCC
Q 040192          287 ALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLP  348 (386)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~  348 (386)
                       ++....       ..+..+++|++|+++++.--..+|.. ..+++|+.+++.+++.+...|
T Consensus       256 -l~~~~p-------~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          256 -IYGTLP-------QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             -CEECCC-------GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             -ccCcCC-------hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence             442222       14566677777777777333345543 556777777777666555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=8e-24  Score=210.15  Aligned_cols=299  Identities=12%  Similarity=0.195  Sum_probs=196.3

Q ss_pred             cccEEEEcCCCCCC------------------CCc-cc--ccccCccEEEecCCcccc-cCCC-CCCCCCcEEecccCcC
Q 040192           32 KEEHLVYAGAGLSE------------------TPD-VR--KWEKNVRRLSLMENQIEN-LSEV-PTCPYLRTLFLNNNAP   88 (386)
Q Consensus        32 ~~~~l~~~~~~l~~------------------~p~-~~--~~~~~L~~L~l~~~~~~~-~~~~-~~~~~L~~L~l~~~~~   88 (386)
                      ....+.+.+..+.+                  +|. +.  .++ +|++|++++|.+.+ +|.. ..+++|++|++++|..
T Consensus       207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  285 (636)
T 4eco_A          207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK-DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG  285 (636)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred             CCCEEECcCCccccccccccccccccchhcccCchhhhhcccC-CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence            47788888888888                  775 55  678 89999999998776 6655 7888999999998842


Q ss_pred             CC--cCChhhhcCC------CcCceecccCCccccccch--hhcCCCccCEEEcCCCCCC-cccHhhhccCCCCEEEccC
Q 040192           89 LR--RIDSGFFQSM------PRLNVLNLSGAIRLYSFPL--GISKLISLQHLDLSNTGIA-ELPKELNALVNLTCLNLEE  157 (386)
Q Consensus        89 ~~--~~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~  157 (386)
                      +.  .+|.. ++.+      ++|++|++++| .+..+|.  .++.+++|++|++++|.++ .+| .++.+++|+.|++++
T Consensus       286 l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~  362 (636)
T 4eco_A          286 ISGEQLKDD-WQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY  362 (636)
T ss_dssp             SCHHHHHHH-HHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred             CccccchHH-HHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence            54  35555 4444      78888888888 7777777  7788888888888888877 777 667777777777777


Q ss_pred             CccccccchhhhcCCCC-CcEEEEeccCCccccC-CCc--Cccccccc-ceeecCCccc---------------------
Q 040192          158 TWRLTVIPRRLISSFSS-LHVLRIFGSGYSYSDG-MIG--NGEFEQLC-GFRRSKSLDV---------------------  211 (386)
Q Consensus       158 ~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~-~~~--l~~L~~L~-~~~~~~~~~~---------------------  211 (386)
                      | .+..+|.. +..+++ |++|++++|.+..... +..  +++|+.+. ..+.+.+..+                     
T Consensus       363 N-~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L  440 (636)
T 4eco_A          363 N-QITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL  440 (636)
T ss_dssp             S-EEEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred             C-ccccccHh-hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence            7 34466665 666776 7777777776664321 111  12344443 1122222111                     


Q ss_pred             ----------cccccccCCcEEEeeccCCccchhcccccccc--cCccccccCcccEEEecCCCCCCcccc-cc--CCCC
Q 040192          212 ----------SALADLKRLNRLKIAECYGLAELKMDYKSVVQ--NTGQSFVFHSLKKFQISYCKELKDLTF-LI--FAPN  276 (386)
Q Consensus       212 ----------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~-l~--~l~~  276 (386)
                                ..+..+++|+.|++++|+.. .++...+....  ..    .+++|+.|++++| .++.++. +.  .+++
T Consensus       441 s~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~----~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~  514 (636)
T 4eco_A          441 SNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFK----NTYLLTSIDLRFN-KLTKLSDDFRATTLPY  514 (636)
T ss_dssp             CSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECT----TGGGCCEEECCSS-CCCBCCGGGSTTTCTT
T ss_pred             cCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccccc----ccCCccEEECcCC-cCCccChhhhhccCCC
Confidence                      22233566666666666544 23333322000  00    1238888888888 4555543 44  7888


Q ss_pred             CcEEeecCCCccchhhccCcccccCCCCcccccceeeecc------ccccccccCCCcCCCCccEEeecCcccCcCCCCC
Q 040192          277 LKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSY------LPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLD  350 (386)
Q Consensus       277 L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~  350 (386)
                      |+.|+|++|. ++.++.        .+..+++|++|++++      +.....++.....+++|+.|++++| +++.+|..
T Consensus       515 L~~L~Ls~N~-l~~ip~--------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~  584 (636)
T 4eco_A          515 LVGIDLSYNS-FSKFPT--------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK  584 (636)
T ss_dssp             CCEEECCSSC-CSSCCC--------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC
T ss_pred             cCEEECCCCC-CCCcCh--------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh
Confidence            8888888855 555433        556788999999854      4335566667778899999999885 56888877


Q ss_pred             cc
Q 040192          351 SN  352 (386)
Q Consensus       351 ~~  352 (386)
                      ..
T Consensus       585 ~~  586 (636)
T 4eco_A          585 IT  586 (636)
T ss_dssp             CC
T ss_pred             Hh
Confidence            54

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=3.8e-23  Score=204.59  Aligned_cols=178  Identities=19%  Similarity=0.209  Sum_probs=73.1

Q ss_pred             cCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcc-cHhhhccCCCCEEEccCCccccccchhhhcCCCCCc
Q 040192           98 QSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAEL-PKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLH  176 (386)
Q Consensus        98 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  176 (386)
                      +.+++|++|++++| .+..+|..+..+++|++|++++|.+..+ |..+..+++|+.|++++|.....++...+..+++|+
T Consensus       275 ~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  353 (606)
T 3t6q_A          275 HCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR  353 (606)
T ss_dssp             TTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred             ccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence            33444444444444 3444444444444444444444444433 223344444444444444333333333344444455


Q ss_pred             EEEEeccCCcccc----CCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCcccccc
Q 040192          177 VLRIFGSGYSYSD----GMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVF  251 (386)
Q Consensus       177 ~L~l~~~~~~~~~----~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (386)
                      +|++++|.+....    .+..++.|+.+. ..+...+..+..+..+++|+.|++++|+.....+...+.         .+
T Consensus       354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------~l  424 (606)
T 3t6q_A          354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ---------NL  424 (606)
T ss_dssp             EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT---------TC
T ss_pred             EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh---------Cc
Confidence            5554444443321    223333333333 111112222333444455555555554433211112122         44


Q ss_pred             CcccEEEecCCCCCCcc--ccccCCCCCcEEeecCCC
Q 040192          252 HSLKKFQISYCKELKDL--TFLIFAPNLKSIEVDSCY  286 (386)
Q Consensus       252 ~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~c~  286 (386)
                      ++|+.|++++|. ++..  ..++.+++|++|++++|.
T Consensus       425 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~  460 (606)
T 3t6q_A          425 HLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNH  460 (606)
T ss_dssp             TTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCB
T ss_pred             ccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCC
Confidence            555555555553 2221  224445555555555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=1e-23  Score=201.35  Aligned_cols=287  Identities=15%  Similarity=0.159  Sum_probs=216.0

Q ss_pred             cccEEEEcCCCCCCC-C-cccccccCccEEEecCCcccc-cCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCcee
Q 040192           32 KEEHLVYAGAGLSET-P-DVRKWEKNVRRLSLMENQIEN-LSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVL  106 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~-p-~~~~~~~~L~~L~l~~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  106 (386)
                      ....+++.+..+.++ | .+..++ +|++|++++|.+.. ++.  ...+++|++|++++| .+..+.+..++++++|++|
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCT-TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEE
T ss_pred             ccCEEEecCCccCcCChhHhccCc-cccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEE
Confidence            478899999988876 3 378888 99999999998874 543  388999999999999 6776655558999999999


Q ss_pred             cccCCccccc-cchh--hcCCCccCEEEcCCCCCCcc-cHh-hhccCCCCEEEccCCccccccchhhhc-----------
Q 040192          107 NLSGAIRLYS-FPLG--ISKLISLQHLDLSNTGIAEL-PKE-LNALVNLTCLNLEETWRLTVIPRRLIS-----------  170 (386)
Q Consensus       107 ~l~~~~~~~~-~~~~--~~~l~~L~~L~l~~~~i~~l-~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~-----------  170 (386)
                      ++++| .+.. .+..  +..+++|++|++++|.++.+ |.. +..+++|+.|++++|......+.. +.           
T Consensus       109 ~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~  186 (455)
T 3v47_A          109 TLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLR  186 (455)
T ss_dssp             ECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEE
T ss_pred             eCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccc
Confidence            99999 7764 3443  88899999999999999876 443 789999999999999544333322 32           


Q ss_pred             -----------------------CCCCCcEEEEeccCCcccc--CC------C---------------------------
Q 040192          171 -----------------------SFSSLHVLRIFGSGYSYSD--GM------I---------------------------  192 (386)
Q Consensus       171 -----------------------~l~~L~~L~l~~~~~~~~~--~~------~---------------------------  192 (386)
                                             .+++|+.|++++|.+.+..  .+      .                           
T Consensus       187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  266 (455)
T 3v47_A          187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN  266 (455)
T ss_dssp             CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred             cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence                                   3367888888888765420  00      0                           


Q ss_pred             ------cCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCC
Q 040192          193 ------GNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKEL  265 (386)
Q Consensus       193 ------~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  265 (386)
                            ....|+.+. ..+.+.+..+..+..+++|++|++++|+... .....+.         .+++|+.|++++| .+
T Consensus       267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~---------~l~~L~~L~Ls~N-~l  335 (455)
T 3v47_A          267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK-IDDNAFW---------GLTHLLKLNLSQN-FL  335 (455)
T ss_dssp             TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTT---------TCTTCCEEECCSS-CC
T ss_pred             cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc-cChhHhc---------CcccCCEEECCCC-cc
Confidence                  012333333 2233334446678889999999999997664 4344444         7899999999999 56


Q ss_pred             Ccc--ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCC-CcCCCCccEEeecCcc
Q 040192          266 KDL--TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRK-PLPFPHLKEMKVIHCL  342 (386)
Q Consensus       266 ~~~--~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~  342 (386)
                      +.+  ..+..+++|++|++++|. ++.+..       ..+..+++|++|+++++ .+.+++.. ...+++|+.|++++++
T Consensus       336 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          336 GSIDSRMFENLDKLEVLDLSYNH-IRALGD-------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CEECGGGGTTCTTCCEEECCSSC-CCEECT-------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcChhHhcCcccCCEEECCCCc-ccccCh-------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence            654  346889999999999965 666655       37788999999999999 77777654 4679999999999864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=1.4e-22  Score=196.91  Aligned_cols=143  Identities=22%  Similarity=0.276  Sum_probs=105.5

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      .+.+++++.++.++|.-.. + ++++|++++|.+.+++.  ...+++|++|++++| .+..+++..++.+++|++|++++
T Consensus         2 ~~~l~ls~n~l~~ip~~~~-~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            2 EFLVDRSKNGLIHVPKDLS-Q-KTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CCEEECTTSCCSSCCCSCC-T-TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCS
T ss_pred             cceEecCCCCccccccccc-c-cccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCC
Confidence            4567788888888875222 4 88888888888887653  278888888888888 67766555578888888888888


Q ss_pred             CccccccchhhcCCCccCEEEcCCCCCCc--ccHhhhccCCCCEEEccCCccccccchhhhcCCCCC--cEEEEeccCC
Q 040192          111 AIRLYSFPLGISKLISLQHLDLSNTGIAE--LPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSL--HVLRIFGSGY  185 (386)
Q Consensus       111 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~  185 (386)
                      | .+..+|..  .+++|++|++++|.++.  +|..++.+++|++|++++|... .   ..+..+++|  +.|++++|.+
T Consensus        79 N-~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~-~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           79 N-KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-K---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             S-CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC-G---GGGGGGTTSCEEEEEEEECTT
T ss_pred             C-ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc-h---hhccccccceeeEEEeecccc
Confidence            8 77777765  78888888888888875  5677888888888888887432 2   124555555  7777766655

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=1.8e-23  Score=190.83  Aligned_cols=88  Identities=23%  Similarity=0.348  Sum_probs=49.6

Q ss_pred             CCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEc
Q 040192           76 PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNL  155 (386)
Q Consensus        76 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l  155 (386)
                      ++++.|++++| .+..+|.. +..+++|++|++++| .+..+|..++.+++|++|++++|.++.+|..++.+++|+.|++
T Consensus        81 ~~l~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSV-PLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESS-CCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCC-CchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            45555555555 44455544 344555666666555 5555555555566666666666655555555556666666666


Q ss_pred             cCCccccccch
Q 040192          156 EETWRLTVIPR  166 (386)
Q Consensus       156 ~~~~~~~~~~~  166 (386)
                      ++|..++.+|.
T Consensus       158 ~~n~~~~~~p~  168 (328)
T 4fcg_A          158 RACPELTELPE  168 (328)
T ss_dssp             EEETTCCCCCS
T ss_pred             CCCCCccccCh
Confidence            65545555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.91  E-value=2.8e-23  Score=191.75  Aligned_cols=269  Identities=20%  Similarity=0.200  Sum_probs=206.8

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+++.+.++..+|.-  +.+++++|++++|.+..++.  ...+++|++|++++| .+..+++..++.+++|++|++++
T Consensus        33 ~~~c~~~~~~l~~iP~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           33 NGICKGSSGSLNSIPSG--LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             TSEEECCSTTCSSCCTT--CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEeeCCCCCccccccc--ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCC
Confidence            44577888899999862  22389999999999999766  389999999999999 77777766689999999999999


Q ss_pred             Cccccccchh-hcCCCccCEEEcCCCCCCcccH--hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192          111 AIRLYSFPLG-ISKLISLQHLDLSNTGIAELPK--ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       111 ~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      | .+..++.. ++.+++|++|++++|.++.+|.  .+..+++|+.|++++|..+..++...+..+++|++|++++|.+..
T Consensus       110 n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          110 N-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             S-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             C-cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            9 88888654 8899999999999999998886  678899999999999966777766568999999999999997766


Q ss_pred             ccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCc
Q 040192          188 SDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKD  267 (386)
Q Consensus       188 ~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  267 (386)
                      .                     .+..+..+++|++|++++|.... .+...+.         .+++|+.|++++|. ++.
T Consensus       189 ~---------------------~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~---------~~~~L~~L~L~~n~-l~~  236 (353)
T 2z80_A          189 Y---------------------EPKSLKSIQNVSHLILHMKQHIL-LLEIFVD---------VTSSVECLELRDTD-LDT  236 (353)
T ss_dssp             E---------------------CTTTTTTCSEEEEEEEECSCSTT-HHHHHHH---------HTTTEEEEEEESCB-CTT
T ss_pred             c---------------------CHHHHhccccCCeecCCCCcccc-chhhhhh---------hcccccEEECCCCc-ccc
Confidence            4                     13445667889999999887533 4433333         57899999999984 554


Q ss_pred             cc-----cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCC-cCCCCccEEeecCc
Q 040192          268 LT-----FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKP-LPFPHLKEMKVIHC  341 (386)
Q Consensus       268 ~~-----~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~i~~c  341 (386)
                      .+     .....+.++.+++.++. +.+.....  . ...+..+++|++|+++++ .+..++... ..+++|+.|+++++
T Consensus       237 ~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~--l-~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          237 FHFSELSTGETNSLIKKFTFRNVK-ITDESLFQ--V-MKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             CCCC------CCCCCCEEEEESCB-CCHHHHHH--H-HHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccccccccccccchhhcccccccc-ccCcchhh--h-HHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCC
Confidence            32     23346778888888854 43321100  0 014567889999999999 777887664 67899999999886


Q ss_pred             c
Q 040192          342 L  342 (386)
Q Consensus       342 ~  342 (386)
                      +
T Consensus       312 ~  312 (353)
T 2z80_A          312 P  312 (353)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=2e-23  Score=211.86  Aligned_cols=298  Identities=19%  Similarity=0.173  Sum_probs=157.8

Q ss_pred             ccEEEEcCCCCCCC-C-cccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSET-P-DVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~-p-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      .+.+.+.+..+.+. | .+..++ +|++|++++|.+.+..+...+++|++|++++|...+.+|..+...+++|++|++++
T Consensus       225 L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~  303 (768)
T 3rgz_A          225 LQHLDISGNKLSGDFSRAISTCT-ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG  303 (768)
T ss_dssp             CCEEECCSSCCCSCHHHHTTTCS-SCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS
T ss_pred             CCEEECcCCcCCCcccHHHhcCC-CCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC
Confidence            55566666555532 2 245555 66666666666554222225555555555555222244444223335555555555


Q ss_pred             Ccccc-ccchhhcCCCccCEEEcCCCCCC-cccHh-hhccCCCCEEEccCCccccccchhhhcC----------------
Q 040192          111 AIRLY-SFPLGISKLISLQHLDLSNTGIA-ELPKE-LNALVNLTCLNLEETWRLTVIPRRLISS----------------  171 (386)
Q Consensus       111 ~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~----------------  171 (386)
                      | .+. .+|..++.+++|++|++++|.+. .+|.. ++.+++|+.|++++|...+.+|.. +..                
T Consensus       304 n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~  381 (768)
T 3rgz_A          304 N-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFS  381 (768)
T ss_dssp             S-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEE
T ss_pred             C-cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcC
Confidence            5 333 33455555555555555555554 44433 455555555555555333344443 333                


Q ss_pred             -----------CCCCcEEEEeccCCccc--cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcc
Q 040192          172 -----------FSSLHVLRIFGSGYSYS--DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMD  237 (386)
Q Consensus       172 -----------l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  237 (386)
                                 +++|++|++++|.+.+.  ..+..+++|+.|. ..+...+..+..+..+++|+.|++++|......+ .
T Consensus       382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~  460 (768)
T 3rgz_A          382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-Q  460 (768)
T ss_dssp             EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC-G
T ss_pred             CCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC-H
Confidence                       34455555544444322  1233344444444 3333344445556666666666666665443222 2


Q ss_pred             cccccccCccccccCcccEEEecCCCCCCcc-ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecc
Q 040192          238 YKSVVQNTGQSFVFHSLKKFQISYCKELKDL-TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSY  316 (386)
Q Consensus       238 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  316 (386)
                      .+.         .+++|+.|++++|.....+ ..++.+++|+.|++++|. +.....       ..+..+++|++|++++
T Consensus       461 ~~~---------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p-------~~~~~l~~L~~L~L~~  523 (768)
T 3rgz_A          461 ELM---------YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-LTGEIP-------KWIGRLENLAILKLSN  523 (768)
T ss_dssp             GGG---------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCC-------GGGGGCTTCCEEECCS
T ss_pred             HHc---------CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc-cCCcCC-------hHHhcCCCCCEEECCC
Confidence            222         5677777777777433233 346667777777777755 433222       1556677777777777


Q ss_pred             ccccccccCCCcCCCCccEEeecCcccCcCCCCCc
Q 040192          317 LPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDS  351 (386)
Q Consensus       317 ~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~  351 (386)
                      |.....++.....+++|+.|++++|+--..+|...
T Consensus       524 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~  558 (768)
T 3rgz_A          524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM  558 (768)
T ss_dssp             SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred             CcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence            74444666666677777777777765444566543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=1.1e-22  Score=186.26  Aligned_cols=289  Identities=16%  Similarity=0.155  Sum_probs=181.9

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+.+.+.++..+|... .+ +++.|++++|.+..++.  ...+++|++|++++| .+..+++..++.+++|++|++++
T Consensus        35 l~~l~~~~~~l~~ip~~~-~~-~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           35 LRVVQCSDLGLKAVPKEI-SP-DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             TTEEECCSSCCSSCCSCC-CT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCS
T ss_pred             CCEEECCCCCccccCCCC-CC-CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCC
Confidence            566777877887777522 23 78888888888887644  378888888888888 67766555578888888888888


Q ss_pred             CccccccchhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCcccc-ccchhhhcCCCCCcEEEEeccCCccc
Q 040192          111 AIRLYSFPLGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLT-VIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       111 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      | .+..+|..+.  ++|++|++++|.++.++. .+..+++|+.|++++|.... ......+..+ +|+.|++++|.+...
T Consensus       112 n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l  187 (332)
T 2ft3_A          112 N-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI  187 (332)
T ss_dssp             S-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred             C-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence            8 7777766544  788888888888887764 46778888888888884421 1223335666 888888888877765


Q ss_pred             cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCc
Q 040192          189 DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKD  267 (386)
Q Consensus       189 ~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  267 (386)
                      .. ...+.|+.|. ..+.+.+..+..+..+++|+.|++++|+... .....+.         .+++|+.|++++| .++.
T Consensus       188 ~~-~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~---------~l~~L~~L~L~~N-~l~~  255 (332)
T 2ft3_A          188 PK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLS---------FLPTLRELHLDNN-KLSR  255 (332)
T ss_dssp             CS-SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGG---------GCTTCCEEECCSS-CCCB
T ss_pred             Cc-cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhh---------CCCCCCEEECCCC-cCee
Confidence            22 1224555555 3333444444566667777777777775543 3333333         5677777777777 4555


Q ss_pred             cc-cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccccc--ccccCCCcCCCCccEEeecCcc
Q 040192          268 LT-FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNL--KSIYRKPLPFPHLKEMKVIHCL  342 (386)
Q Consensus       268 ~~-~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~i~~c~  342 (386)
                      ++ .+..+++|+.|+++++. ++.++....... .....+++|+.|++++++..  ...+.....+++|+.++++++.
T Consensus       256 lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~-~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          256 VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPV-GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCS-SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cChhhhcCccCCEEECCCCC-CCccChhHcccc-ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            43 36667777777777743 665544311110 01112466777777777532  1122234446677777776653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=5.3e-22  Score=181.46  Aligned_cols=241  Identities=19%  Similarity=0.219  Sum_probs=161.4

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+.+.+.++..+|..  ++++++.|++++|.+.+++.  ...+++|++|++++| .+..+.+..++.+++|++|++++
T Consensus        33 l~~l~~~~~~l~~lp~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           33 LRVVQCSDLGLEKVPKD--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             TTEEECTTSCCCSCCCS--CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CeEEEecCCCccccCcc--CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCC
Confidence            56788888888888752  22389999999999999765  388999999999999 77777555588999999999999


Q ss_pred             CccccccchhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCcccc-ccchhhhcCCCCCcEEEEeccCCccc
Q 040192          111 AIRLYSFPLGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLT-VIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       111 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      | .+..+|..+.  ++|++|++++|.++.++. .+..+++|+.|++++|.... ......+..+++|+.|++++|.+...
T Consensus       110 n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          110 N-QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             S-CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             C-cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence            9 8888876554  789999999999997764 57889999999999995432 13333488999999999999988765


Q ss_pred             cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCc
Q 040192          189 DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKD  267 (386)
Q Consensus       189 ~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  267 (386)
                      .. ...+.|+.|. ..+.+.+..+..+..+++|+.|++++|.... .....+.         .+++|+.|++++| .++.
T Consensus       187 ~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~---------~l~~L~~L~L~~N-~l~~  254 (330)
T 1xku_A          187 PQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLA---------NTPHLRELHLNNN-KLVK  254 (330)
T ss_dssp             CS-SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGG---------GSTTCCEEECCSS-CCSS
T ss_pred             Cc-cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhhcc---------CCCCCCEEECCCC-cCcc
Confidence            21 1113444443 2222222333445555555555555554332 2222222         4555555555555 3333


Q ss_pred             cc-cccCCCCCcEEeecCCCccchhh
Q 040192          268 LT-FLIFAPNLKSIEVDSCYALEEIV  292 (386)
Q Consensus       268 ~~-~l~~l~~L~~L~l~~c~~~~~~~  292 (386)
                      ++ .+..+++|+.|++++|. ++.++
T Consensus       255 lp~~l~~l~~L~~L~l~~N~-i~~~~  279 (330)
T 1xku_A          255 VPGGLADHKYIQVVYLHNNN-ISAIG  279 (330)
T ss_dssp             CCTTTTTCSSCCEEECCSSC-CCCCC
T ss_pred             CChhhccCCCcCEEECCCCc-CCccC
Confidence            32 34455555555555533 44443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=4.1e-23  Score=209.55  Aligned_cols=264  Identities=16%  Similarity=0.096  Sum_probs=162.5

Q ss_pred             CCCCcEEecccCcCCC-cCChhhhcCCCcCceecccCCcccc-ccchhhcCCCccCEEEcCCCCCC-cccHhhhccCCCC
Q 040192           75 CPYLRTLFLNNNAPLR-RIDSGFFQSMPRLNVLNLSGAIRLY-SFPLGISKLISLQHLDLSNTGIA-ELPKELNALVNLT  151 (386)
Q Consensus        75 ~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~  151 (386)
                      +++|+.|++++| .+. .+|.. +..+++|++|++++| .+. .+|..++.+++|+.|++++|.+. .+|..++.+++|+
T Consensus       393 ~~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  469 (768)
T 3rgz_A          393 KNTLQELYLQNN-GFTGKIPPT-LSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE  469 (768)
T ss_dssp             TCCCCEEECCSS-EEEEECCGG-GGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             cCCccEEECCCC-ccccccCHH-HhcCCCCCEEECcCC-cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence            445555555555 333 33333 566677777777776 554 44666667777777777777766 5666677777777


Q ss_pred             EEEccCCccccccchhhhcCCCCCcEEEEeccCCccc--cCCCcCccccccc-ceeecCCccccccccccCCcEEEeecc
Q 040192          152 CLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS--DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAEC  228 (386)
Q Consensus       152 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~  228 (386)
                      .|++++|...+.+|.. +..+++|+.|++++|.+.+.  ..+..++.|+.|. ..+...+..+..+..+++|+.|++++|
T Consensus       470 ~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          470 TLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             EEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             EEEecCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            7777777555556654 67777777777777776643  2344555555555 344445555667777778888888777


Q ss_pred             CCccchhccccccc------------------------------------------------------------ccCccc
Q 040192          229 YGLAELKMDYKSVV------------------------------------------------------------QNTGQS  248 (386)
Q Consensus       229 ~~~~~~~~~~~~~~------------------------------------------------------------~~~~~~  248 (386)
                      +....++..++...                                                            ..+...
T Consensus       549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~  628 (768)
T 3rgz_A          549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF  628 (768)
T ss_dssp             EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred             ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence            65433322211100                                                            000001


Q ss_pred             cccCcccEEEecCCCCCCcc-ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCC
Q 040192          249 FVFHSLKKFQISYCKELKDL-TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKP  327 (386)
Q Consensus       249 ~~~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  327 (386)
                      ..+++|+.|++++|.....+ ..++.+++|+.|+|++|. ++..++       ..++.+++|++|+|+++.--..+|...
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip-------~~l~~L~~L~~LdLs~N~l~g~ip~~l  700 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND-ISGSIP-------DEVGDLRGLNILDLSSNKLDGRIPQAM  700 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC-CCSCCC-------GGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc-cCCCCC-------hHHhCCCCCCEEECCCCcccCcCChHH
Confidence            13567788888887433333 346778888888888855 443333       266777888888888884444677777


Q ss_pred             cCCCCccEEeecCcccCcCCCCC
Q 040192          328 LPFPHLKEMKVIHCLKLKKLPLD  350 (386)
Q Consensus       328 ~~~~~L~~L~i~~c~~L~~l~~~  350 (386)
                      ..+++|+.|++++++--..+|..
T Consensus       701 ~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          701 SALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             GGCCCCSEEECCSSEEEEECCSS
T ss_pred             hCCCCCCEEECcCCcccccCCCc
Confidence            77888888888886443446654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=1.1e-22  Score=193.95  Aligned_cols=261  Identities=18%  Similarity=0.167  Sum_probs=204.7

Q ss_pred             CcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCc
Q 040192           47 PDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLIS  126 (386)
Q Consensus        47 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  126 (386)
                      +.+..++ ++++|++++|.+.++|....+++|++|++++| .+..++   ++.+++|++|++++| .+..++  ++.+++
T Consensus        36 ~~~~~l~-~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~  107 (457)
T 3bz5_A           36 ISEEQLA-TLTSLDCHNSSITDMTGIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTK  107 (457)
T ss_dssp             EEHHHHT-TCCEEECCSSCCCCCTTGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTT
T ss_pred             cChhHcC-CCCEEEccCCCcccChhhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCc
Confidence            4577788 99999999999999987799999999999999 777775   689999999999999 888775  789999


Q ss_pred             cCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCccccccc-ceee
Q 040192          127 LQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLC-GFRR  205 (386)
Q Consensus       127 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~-~~~~  205 (386)
                      |++|++++|.++.++  ++.+++|+.|++++| .+..++   ++.+++|+.|++++|...+.-.+..++.|+.|. ..+.
T Consensus       108 L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          108 LTYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             CCEEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc
Confidence            999999999999886  889999999999999 455553   789999999999999554443566677777776 3344


Q ss_pred             cCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCC
Q 040192          206 SKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSC  285 (386)
Q Consensus       206 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c  285 (386)
                      +.+.   .+..+++|+.|++++|+... .   .+.         .+++|+.|++++| .++.++ ++.+++|+.|+++++
T Consensus       182 l~~l---~l~~l~~L~~L~l~~N~l~~-~---~l~---------~l~~L~~L~Ls~N-~l~~ip-~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          182 ITEL---DVSQNKLLNRLNCDTNNITK-L---DLN---------QNIQLTFLDCSSN-KLTEID-VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             CCCC---CCTTCTTCCEEECCSSCCSC-C---CCT---------TCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSS
T ss_pred             ccee---ccccCCCCCEEECcCCcCCe-e---ccc---------cCCCCCEEECcCC-cccccC-ccccCCCCEEEeeCC
Confidence            4442   27788999999999997654 2   233         7899999999999 577776 888999999999996


Q ss_pred             CccchhhccCcccccCCCCccc-------ccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCC
Q 040192          286 YALEEIVSDVPEVMMGNLNPFA-------QFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPL  349 (386)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~-------~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~  349 (386)
                      . ++.++.       ..+..+.       +|+.|++++|..+..++  ...+++|+.|++++|+.++.+|.
T Consensus       244 ~-l~~~~~-------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          244 P-LTELDV-------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC  304 (457)
T ss_dssp             C-CSCCCC-------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred             c-CCCcCH-------HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence            5 666533       1222222       55666777776566665  34578888888888876555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.90  E-value=1.3e-22  Score=192.86  Aligned_cols=240  Identities=24%  Similarity=0.285  Sum_probs=192.6

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+.+.+.++..+|..  ++++++.|++++|.+..++..  ..+++|++|++++| .+..+++..+.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~~iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDG--ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSCCSC--CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCCC--CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCC
Confidence            45788999999999862  233899999999999986543  89999999999999 88888877799999999999999


Q ss_pred             Cccccccch-hhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192          111 AIRLYSFPL-GISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       111 ~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      | .+..++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|..+..++...+..+++|+.|++++|.+...
T Consensus       122 n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  200 (440)
T 3zyj_A          122 N-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI  200 (440)
T ss_dssp             S-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred             C-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence            9 8888864 68899999999999999998775 6788999999999998788888887799999999999999988765


Q ss_pred             cCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc
Q 040192          189 DGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL  268 (386)
Q Consensus       189 ~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  268 (386)
                      .                       .+..+++|+.|++++|+... .....+.         .+++|+.|++++| .++.+
T Consensus       201 ~-----------------------~~~~l~~L~~L~Ls~N~l~~-~~~~~~~---------~l~~L~~L~L~~n-~l~~~  246 (440)
T 3zyj_A          201 P-----------------------NLTPLIKLDELDLSGNHLSA-IRPGSFQ---------GLMHLQKLWMIQS-QIQVI  246 (440)
T ss_dssp             C-----------------------CCTTCSSCCEEECTTSCCCE-ECTTTTT---------TCTTCCEEECTTC-CCCEE
T ss_pred             c-----------------------ccCCCcccCEEECCCCccCc-cChhhhc---------cCccCCEEECCCC-ceeEE
Confidence            2                       24456778888888885544 3334444         6788888888888 45554


Q ss_pred             c--cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccc
Q 040192          269 T--FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLP  318 (386)
Q Consensus       269 ~--~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  318 (386)
                      +  .+..+++|+.|+|++| .++.++.       ..+..+++|+.|+|++++
T Consensus       247 ~~~~~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          247 ERNAFDNLQSLVEINLAHN-NLTLLPH-------DLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CTTSSTTCTTCCEEECTTS-CCCCCCT-------TTTSSCTTCCEEECCSSC
T ss_pred             ChhhhcCCCCCCEEECCCC-CCCccCh-------hHhccccCCCEEEcCCCC
Confidence            2  3567788888888885 4666655       366777888888888754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=1.4e-22  Score=198.91  Aligned_cols=123  Identities=24%  Similarity=0.340  Sum_probs=81.9

Q ss_pred             ccEEEEcCCCCCCCC--cccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecc
Q 040192           33 EEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNL  108 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  108 (386)
                      ...+++.+..+.+++  ++..++ +|++|++++|.+.+++..  ..+++|++|++++| .+..+++..++++++|++|++
T Consensus        30 l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           30 TKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCS-SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEEC
T ss_pred             ccEEEccCCccCccChhHhhCCC-CceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccc
Confidence            556666666666554  356666 777777777777765432  66777777777777 566665555667777777777


Q ss_pred             cCCccccccch-hhcCCCccCEEEcCCCCCCc--ccHhhhccCCCCEEEccCC
Q 040192          109 SGAIRLYSFPL-GISKLISLQHLDLSNTGIAE--LPKELNALVNLTCLNLEET  158 (386)
Q Consensus       109 ~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~~  158 (386)
                      ++| .+..++. .++++++|++|++++|.+..  +|..++.+++|++|++++|
T Consensus       108 ~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A          108 VET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             TTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred             ccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence            776 6665543 46677777777777776663  5666677777777777666

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=1.3e-22  Score=193.50  Aligned_cols=240  Identities=24%  Similarity=0.268  Sum_probs=189.4

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+.+.+.++..+|.  .++++++.|++++|.+..++..  ..+++|+.|++++| .+..+++..+.++++|++|++++
T Consensus        56 ~~~v~c~~~~l~~iP~--~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSSCCS--CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCccCC--CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCC
Confidence            4578899999999985  2334899999999999986443  89999999999999 88888777689999999999999


Q ss_pred             Cccccccch-hhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192          111 AIRLYSFPL-GISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       111 ~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      | .+..++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|..+..++...+..+++|+.|++++|.+...
T Consensus       133 n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          133 N-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             S-CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             C-cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            9 8887754 57889999999999999998875 6788999999999998788888887789999999999999988765


Q ss_pred             cCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc
Q 040192          189 DGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL  268 (386)
Q Consensus       189 ~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  268 (386)
                      .                       .+..+++|+.|++++|.... .....+.         .+++|+.|++++| .++.+
T Consensus       212 ~-----------------------~~~~l~~L~~L~Ls~N~l~~-~~~~~~~---------~l~~L~~L~L~~n-~l~~~  257 (452)
T 3zyi_A          212 P-----------------------NLTPLVGLEELEMSGNHFPE-IRPGSFH---------GLSSLKKLWVMNS-QVSLI  257 (452)
T ss_dssp             C-----------------------CCTTCTTCCEEECTTSCCSE-ECGGGGT---------TCTTCCEEECTTS-CCCEE
T ss_pred             c-----------------------cccccccccEEECcCCcCcc-cCccccc---------CccCCCEEEeCCC-cCceE
Confidence            2                       23456778888888776554 3334443         6778888888877 45543


Q ss_pred             --ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccc
Q 040192          269 --TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLP  318 (386)
Q Consensus       269 --~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  318 (386)
                        ..+..+++|+.|+|++| .++.++.       ..+..+++|++|+|++++
T Consensus       258 ~~~~~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          258 ERNAFDGLASLVELNLAHN-NLSSLPH-------DLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CTTTTTTCTTCCEEECCSS-CCSCCCT-------TSSTTCTTCCEEECCSSC
T ss_pred             CHHHhcCCCCCCEEECCCC-cCCccCh-------HHhccccCCCEEEccCCC
Confidence              23566788888888875 4666555       256677788888887754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=3.1e-22  Score=198.02  Aligned_cols=124  Identities=20%  Similarity=0.187  Sum_probs=83.4

Q ss_pred             cccEEEEcCCCCCCC-C-cccccccCccEEEecCCcccccCC-C-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192           32 KEEHLVYAGAGLSET-P-DVRKWEKNVRRLSLMENQIENLSE-V-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN  107 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~-p-~~~~~~~~L~~L~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  107 (386)
                      ..+.+.+.+..+.++ | .+..++ +|++|++++|.+..+++ . ..+++|++|++++| .+..+++..++.+++|++|+
T Consensus        58 ~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~  135 (606)
T 3t6q_A           58 NLTFLDLTRCQIYWIHEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLY  135 (606)
T ss_dssp             TCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEE
T ss_pred             cceEEECCCCccceeChhhccCcc-ccCeeeCCCCcccccChhhhcccccccEeecccc-CcccCCcchhccCCcccEEE
Confidence            367777777777665 3 266777 88888888887777433 2 77788888888887 66665444467777888888


Q ss_pred             ccCCcccccc-chhhcCCCccCEEEcCCCCCCccc-HhhhccCCCC--EEEccCC
Q 040192          108 LSGAIRLYSF-PLGISKLISLQHLDLSNTGIAELP-KELNALVNLT--CLNLEET  158 (386)
Q Consensus       108 l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~--~L~l~~~  158 (386)
                      +++| .+..+ .+.+..+++|++|++++|.++.++ ..++.+++|+  .|++++|
T Consensus       136 L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          136 LGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             CCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred             CCCC-cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence            8777 66654 233444777777777777777553 4456666666  5566555

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=8.7e-23  Score=186.35  Aligned_cols=240  Identities=21%  Similarity=0.246  Sum_probs=194.3

Q ss_pred             CCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEE
Q 040192           99 SMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVL  178 (386)
Q Consensus        99 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  178 (386)
                      ....+++|+++++ .+..+|..+..+++|++|++++|.++.+|..++.+++|++|++++| .+..+|.. ++.+++|++|
T Consensus        79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEE
T ss_pred             cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEE
Confidence            4588999999999 8899998899999999999999999999998999999999999999 45588876 9999999999


Q ss_pred             EEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEE
Q 040192          179 RIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQ  258 (386)
Q Consensus       179 ~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  258 (386)
                      ++++|...+.. ...+...           .....+..+++|++|++++|+.. .++ ..+.         .+++|+.|+
T Consensus       156 ~L~~n~~~~~~-p~~~~~~-----------~~~~~~~~l~~L~~L~L~~n~l~-~lp-~~l~---------~l~~L~~L~  212 (328)
T 4fcg_A          156 SIRACPELTEL-PEPLAST-----------DASGEHQGLVNLQSLRLEWTGIR-SLP-ASIA---------NLQNLKSLK  212 (328)
T ss_dssp             EEEEETTCCCC-CSCSEEE-----------C-CCCEEESTTCCEEEEEEECCC-CCC-GGGG---------GCTTCCEEE
T ss_pred             ECCCCCCcccc-ChhHhhc-----------cchhhhccCCCCCEEECcCCCcC-cch-Hhhc---------CCCCCCEEE
Confidence            99998766541 1111110           01233566899999999999765 343 3343         789999999


Q ss_pred             ecCCCCCCcc-ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEe
Q 040192          259 ISYCKELKDL-TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMK  337 (386)
Q Consensus       259 l~~~~~l~~~-~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  337 (386)
                      +++|. ++.+ +.++.+++|+.|++++|.....++.        .+..+++|++|++++|..+..++.....+++|+.|+
T Consensus       213 L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~--------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  283 (328)
T 4fcg_A          213 IRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPP--------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD  283 (328)
T ss_dssp             EESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCC--------CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred             ccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHH--------HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence            99995 5554 4578899999999999886665543        678899999999999988888988888999999999


Q ss_pred             ecCcccCcCCCCCcccccCcceEEEchHHHHhhhhcc
Q 040192          338 VIHCLKLKKLPLDSNRAKERKIVIRGSRERWEQLQWE  374 (386)
Q Consensus       338 i~~c~~L~~l~~~~~~~~~~l~i~~~~~~~~~~~~~~  374 (386)
                      +++|+.+..+|.....+ ..+.++..+......+.+.
T Consensus       284 L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~~~l~~~  319 (328)
T 4fcg_A          284 LRGCVNLSRLPSLIAQL-PANCIILVPPHLQAQLDQH  319 (328)
T ss_dssp             CTTCTTCCCCCGGGGGS-CTTCEEECCGGGSCC----
T ss_pred             CCCCCchhhccHHHhhc-cCceEEeCCHHHHHHHhhh
Confidence            99999999999887777 7789999997777666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=8.8e-23  Score=206.99  Aligned_cols=300  Identities=13%  Similarity=0.166  Sum_probs=218.2

Q ss_pred             cccEEEEcCCCCC-CCCc-ccccccCccEEEecCCc-ccc--cCCC--------CCCCCCcEEecccCcCCCcCCh-hhh
Q 040192           32 KEEHLVYAGAGLS-ETPD-VRKWEKNVRRLSLMENQ-IEN--LSEV--------PTCPYLRTLFLNNNAPLRRIDS-GFF   97 (386)
Q Consensus        32 ~~~~l~~~~~~l~-~~p~-~~~~~~~L~~L~l~~~~-~~~--~~~~--------~~~~~L~~L~l~~~~~~~~~~~-~~~   97 (386)
                      ....+.+.+..+. .+|. +..++ +|+.|++++|. +++  +|..        ..+++|+.|++++| .+..+|. ..+
T Consensus       492 ~L~~L~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l  569 (876)
T 4ecn_A          492 DLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASL  569 (876)
T ss_dssp             TCCEEEEESCTTCCSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHH
T ss_pred             CCCEEECcCCCCCccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhh
Confidence            4778888877643 4564 77888 99999999997 765  5542        34569999999998 6778887 237


Q ss_pred             cCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCC-CCEEEccCCccccccchhhhcCCC--C
Q 040192           98 QSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVN-LTCLNLEETWRLTVIPRRLISSFS--S  174 (386)
Q Consensus        98 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~--~  174 (386)
                      +.+++|++|++++| .+..+| .++.+++|+.|++++|.++.+|..+..+++ |+.|++++|. +..+|.. +..+.  +
T Consensus       570 ~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~-~~~~~~~~  645 (876)
T 4ecn_A          570 QKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNI-FNAKSVYV  645 (876)
T ss_dssp             TTCTTCCEEECTTS-CCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSC-CCTTCSSC
T ss_pred             hcCCCCCEEECCCC-Ccccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchh-hhccccCC
Confidence            89999999999998 777778 788899999999999999888888888888 9999999994 5577764 55554  4


Q ss_pred             CcEEEEeccCCccc-cCC----C--cCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccc-cC
Q 040192          175 LHVLRIFGSGYSYS-DGM----I--GNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQ-NT  245 (386)
Q Consensus       175 L~~L~l~~~~~~~~-~~~----~--~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~  245 (386)
                      |+.|++++|.+.+. ..+    .  .+.+|+.|. ..+.+.......+..+++|+.|++++|+.. .++...+.... ..
T Consensus       646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l  724 (876)
T 4ecn_A          646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNY  724 (876)
T ss_dssp             EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCC
T ss_pred             CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccc
Confidence            99999999988664 111    1  223566665 333333322333446889999999998665 34444332100 00


Q ss_pred             ccccccCcccEEEecCCCCCCcccc-cc--CCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecc------
Q 040192          246 GQSFVFHSLKKFQISYCKELKDLTF-LI--FAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSY------  316 (386)
Q Consensus       246 ~~~~~~~~L~~L~l~~~~~l~~~~~-l~--~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------  316 (386)
                      +   .+++|+.|+|++| .++.++. +.  .+++|+.|+|++|. ++.++.        .+..+++|+.|+|++      
T Consensus       725 ~---nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~--------~l~~L~~L~~L~Ls~N~~ls~  791 (876)
T 4ecn_A          725 K---NTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPT--------QPLNSSQLKAFGIRHQRDAEG  791 (876)
T ss_dssp             T---TGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCC--------GGGGCTTCCEEECCCCBCTTC
T ss_pred             c---ccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCC-CCccch--------hhhcCCCCCEEECCCCCCccc
Confidence            0   2449999999999 5666654 44  79999999999965 666533        567889999999987      


Q ss_pred             ccccccccCCCcCCCCccEEeecCcccCcCCCCCcc
Q 040192          317 LPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSN  352 (386)
Q Consensus       317 ~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~  352 (386)
                      +.....++.....+++|+.|++++| ++..+|....
T Consensus       792 N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l~  826 (876)
T 4ecn_A          792 NRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLT  826 (876)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC
T ss_pred             ccccccChHHHhcCCCCCEEECCCC-CCCccCHhhc
Confidence            4334566767778999999999996 5688988754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.90  E-value=7.1e-23  Score=202.64  Aligned_cols=269  Identities=19%  Similarity=0.156  Sum_probs=170.7

Q ss_pred             CCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCC
Q 040192           46 TPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLI  125 (386)
Q Consensus        46 ~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  125 (386)
                      +|.+..++ +++.|+++++.+..++....+++|+.|++++| .++.+|.  + .+++|++|++++|......  .+..++
T Consensus       278 ~~~~~~l~-~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n-~l~~lp~--~-~l~~L~~L~l~~n~~~~~~--~~~~l~  350 (606)
T 3vq2_A          278 IVKFHCLA-NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC-QLKQFPT--L-DLPFLKSLTLTMNKGSISF--KKVALP  350 (606)
T ss_dssp             GGSCGGGT-TCSEEEEESCCCCCCCCCCTTCCCSEEEEESC-CCSSCCC--C-CCSSCCEEEEESCSSCEEC--CCCCCT
T ss_pred             ccccccCC-CCCEEEecCccchhhhhccccccCCEEEcccc-cCccccc--C-CCCccceeeccCCcCccch--hhccCC
Confidence            34566666 78888888888777776677788888888887 5566663  4 7788888888777333333  455777


Q ss_pred             ccCEEEcCCCCCCcc---cHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcccc---CCCcCccccc
Q 040192          126 SLQHLDLSNTGIAEL---PKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSD---GMIGNGEFEQ  199 (386)
Q Consensus       126 ~L~~L~l~~~~i~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~  199 (386)
                      +|++|++++|.++..   +..+..+++|+.|++++| .+..++.. +..+++|+.|++++|.+....   .+..++.|+.
T Consensus       351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  428 (606)
T 3vq2_A          351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY  428 (606)
T ss_dssp             TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCC-CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred             CCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccchhh-ccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence            888888888877644   667777788888888877 34556643 777788888888877766541   2333344444


Q ss_pred             cc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc--ccccCCCC
Q 040192          200 LC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL--TFLIFAPN  276 (386)
Q Consensus       200 L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~  276 (386)
                      |. ..+...+..+..+..+++|++|++++|+......+..+.         .+++|+.|++++| .++..  ..+..+++
T Consensus       429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~  498 (606)
T 3vq2_A          429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA---------NTTNLTFLDLSKC-QLEQISWGVFDTLHR  498 (606)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT---------TCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred             EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc---------cCCCCCEEECCCC-cCCccChhhhccccc
Confidence            43 222222233445566677777777776554322233333         5677777777777 34433  23566777


Q ss_pred             CcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCC-CccEEeecCcc
Q 040192          277 LKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFP-HLKEMKVIHCL  342 (386)
Q Consensus       277 L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~i~~c~  342 (386)
                      |++|++++|. ++....       ..+..+++|++|++++| .+..++.....++ +|+.|++++++
T Consensus       499 L~~L~Ls~N~-l~~~~~-------~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          499 LQLLNMSHNN-LLFLDS-------SHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             CCEEECCSSC-CSCEEG-------GGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred             CCEEECCCCc-CCCcCH-------HHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence            7777777754 554433       25566677777777777 4666666555665 47777776643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=1.9e-22  Score=195.96  Aligned_cols=121  Identities=23%  Similarity=0.187  Sum_probs=87.1

Q ss_pred             cccEEEEcCCCCCCCC--cccccccCccEEEecCCccccc-CCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192           32 KEEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIENL-SEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN  107 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  107 (386)
                      ....+++.+..+.+++  .+..++ +|++|++++|.+.++ |.. ..+++|++|++++| .+..+|..   .+++|++|+
T Consensus        22 ~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~~L~~L~   96 (520)
T 2z7x_B           22 KTTILNISQNYISELWTSDILSLS-KLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH---PTVNLKHLD   96 (520)
T ss_dssp             TCSEEECCSSCCCCCCHHHHTTCT-TCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC---CCCCCSEEE
T ss_pred             cccEEECCCCcccccChhhccccc-cccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc---ccCCccEEe
Confidence            4677888888887775  367777 888888888888875 333 77888888888888 66666654   688888888


Q ss_pred             ccCCccccc--cchhhcCCCccCEEEcCCCCCCcccHhhhccCCC--CEEEccCCcc
Q 040192          108 LSGAIRLYS--FPLGISKLISLQHLDLSNTGIAELPKELNALVNL--TCLNLEETWR  160 (386)
Q Consensus       108 l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L--~~L~l~~~~~  160 (386)
                      +++| .+..  +|..++++++|++|++++|.++.  ..+..+++|  +.|++++|..
T Consensus        97 L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           97 LSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred             ccCC-ccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence            8888 6664  46777888888888888887764  234555555  6666666533

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=1.8e-22  Score=197.33  Aligned_cols=153  Identities=20%  Similarity=0.258  Sum_probs=118.0

Q ss_pred             cccEEEEcCCCCCCCC--cccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192           32 KEEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN  107 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  107 (386)
                      ....+.+.+..+.+++  .+..++ +|++|++++|.+.+++.  ...+++|++|++++| .+..+++..++.+++|++|+
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred             CccEEECcCCccCccChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence            5778888888888763  477888 99999999999998654  388999999999999 78888877788999999999


Q ss_pred             ccCCccccc--cchhhcCCCccCEEEcCCCC-CCccc-HhhhccCCCCEEEccCCccccccchh----------------
Q 040192          108 LSGAIRLYS--FPLGISKLISLQHLDLSNTG-IAELP-KELNALVNLTCLNLEETWRLTVIPRR----------------  167 (386)
Q Consensus       108 l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~-i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~----------------  167 (386)
                      +++| .+..  .|..++++++|++|++++|. +..+| ..+..+++|++|++++|......|..                
T Consensus       105 Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          105 LMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             CTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             CCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            9999 7764  35678889999999999887 56665 46778888888888887544333332                


Q ss_pred             -------hhcCCCCCcEEEEeccCCcc
Q 040192          168 -------LISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       168 -------~l~~l~~L~~L~l~~~~~~~  187 (386)
                             .+..+++|+.|++++|.+.+
T Consensus       184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          184 SAFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             STTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             ccccchhhHhhcccccEEEccCCcccc
Confidence                   12345677777777776655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=5.5e-22  Score=181.35  Aligned_cols=248  Identities=17%  Similarity=0.245  Sum_probs=187.0

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLS  133 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~  133 (386)
                      +++.++++++.+..+|.. -.++++.|++++| .+..++...++.+++|++|++++| .+..+ |..++.+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKD-LPPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCSCCCS-CCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccccCcc-CCCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECC
Confidence            789999999999887764 2479999999999 788888766899999999999999 78776 7789999999999999


Q ss_pred             CCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccc
Q 040192          134 NTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSA  213 (386)
Q Consensus       134 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~  213 (386)
                      +|.++.+|..+.  ++|+.|++++| .+..++...+..+++|+.|++++|.+....                   .....
T Consensus       109 ~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------~~~~~  166 (330)
T 1xku_A          109 KNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSG-------------------IENGA  166 (330)
T ss_dssp             SSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGG-------------------BCTTG
T ss_pred             CCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccC-------------------cChhh
Confidence            999998886654  79999999999 566777666899999999999999876431                   11234


Q ss_pred             cccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc--ccccCCCCCcEEeecCCCccchh
Q 040192          214 LADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL--TFLIFAPNLKSIEVDSCYALEEI  291 (386)
Q Consensus       214 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~c~~~~~~  291 (386)
                      +..+++|+.|++++|.... ++ ..           .+++|+.|++++| .++.+  ..+..+++|+.|++++|. ++.+
T Consensus       167 ~~~l~~L~~L~l~~n~l~~-l~-~~-----------~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~  231 (330)
T 1xku_A          167 FQGMKKLSYIRIADTNITT-IP-QG-----------LPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNS-ISAV  231 (330)
T ss_dssp             GGGCTTCCEEECCSSCCCS-CC-SS-----------CCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSC-CCEE
T ss_pred             ccCCCCcCEEECCCCcccc-CC-cc-----------ccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCc-Ccee
Confidence            5566777778777775442 21 11           3467778888777 35543  346677778888887754 5555


Q ss_pred             hccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCCc
Q 040192          292 VSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDS  351 (386)
Q Consensus       292 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~  351 (386)
                      ..       ..+..+++|++|+++++ .+..++.....+++|+.|+++++ .++.++...
T Consensus       232 ~~-------~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~  282 (330)
T 1xku_A          232 DN-------GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSND  282 (330)
T ss_dssp             CT-------TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTS
T ss_pred             Ch-------hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhh
Confidence            43       25666777888888777 56677666667777888888774 577766543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=3.4e-22  Score=196.24  Aligned_cols=151  Identities=24%  Similarity=0.305  Sum_probs=128.4

Q ss_pred             cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192           32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS  109 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  109 (386)
                      ....+.|.+.++..+|.  .+++++++|++++|.+..++..  ..+++|++|++++| .+..+++..++++++|++|+++
T Consensus         8 ~~~~~~c~~~~l~~ip~--~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~   84 (570)
T 2z63_A            8 PNITYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILT   84 (570)
T ss_dssp             TTTEEECCSSCCSSCCS--SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECT
T ss_pred             CCcEEEeCCCCccccCC--CccccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCc
Confidence            35678899999999986  3344899999999999986543  89999999999999 7888877778999999999999


Q ss_pred             CCccccccc-hhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCcccc-ccchhhhcCCCCCcEEEEeccCCc
Q 040192          110 GAIRLYSFP-LGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLT-VIPRRLISSFSSLHVLRIFGSGYS  186 (386)
Q Consensus       110 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~  186 (386)
                      +| .+..++ ..++.+++|++|++++|.++.++. .++.+++|++|++++|.... .+|.. ++++++|++|++++|.+.
T Consensus        85 ~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A           85 GN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             TC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred             CC-cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccc
Confidence            99 787764 688999999999999999998875 58899999999999995443 35665 899999999999988765


Q ss_pred             c
Q 040192          187 Y  187 (386)
Q Consensus       187 ~  187 (386)
                      .
T Consensus       163 ~  163 (570)
T 2z63_A          163 S  163 (570)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=6.2e-22  Score=194.10  Aligned_cols=121  Identities=25%  Similarity=0.287  Sum_probs=101.2

Q ss_pred             cccEEEEcCCCCCCCC--cccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192           32 KEEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN  107 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  107 (386)
                      ....+.+.+..+.+++  .+..++ +|++|++++|.+.+++.  ...+++|++|++++| .+..+|..   .+++|++|+
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~~L~~L~  127 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC---PMASLRHLD  127 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC---CCTTCSEEE
T ss_pred             CcCEEECCCCCccccChhhhccCC-CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc---ccccCCEEE
Confidence            5778999999999886  488888 99999999999999643  388999999999999 78888875   899999999


Q ss_pred             ccCCcccccc--chhhcCCCccCEEEcCCCCCCcccHhhhccCCC--CEEEccCCcc
Q 040192          108 LSGAIRLYSF--PLGISKLISLQHLDLSNTGIAELPKELNALVNL--TCLNLEETWR  160 (386)
Q Consensus       108 l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L--~~L~l~~~~~  160 (386)
                      +++| .+..+  |..++++++|++|++++|.++..  .+..+++|  +.|++++|..
T Consensus       128 Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          128 LSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred             CCCC-CccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence            9999 78765  47899999999999999988753  34455555  8888887744

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=1.1e-21  Score=196.68  Aligned_cols=150  Identities=21%  Similarity=0.232  Sum_probs=95.6

Q ss_pred             cEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192           34 EHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA  111 (386)
Q Consensus        34 ~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  111 (386)
                      ..+++.+.++..+|..  +++++++|++++|.+..++..  ..+++|++|++++| .+..+++..++++++|++|++++|
T Consensus         7 ~~~~cs~~~L~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             SEEECCSSCCSSCCSC--SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSS
T ss_pred             CeeECCCCCccccccc--cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCC
Confidence            4566666667666642  223677777777777765542  66777777777776 555555555667777777777777


Q ss_pred             ccccccch-hhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192          112 IRLYSFPL-GISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       112 ~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                       .+..+|. .++++++|++|++++|.++.++ ..++.+++|++|++++|... ..+...+..+++|++|++++|.+...
T Consensus        84 -~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A           84 -ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             -CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-CCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             -ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc-ccCchhhcccccCCEEEccCCccccc
Confidence             6666654 4667777777777777776655 35666777777777777433 33322366677777777777665544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=3.4e-22  Score=180.80  Aligned_cols=241  Identities=20%  Similarity=0.260  Sum_probs=181.3

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcC---ChhhhcCCCcCceec
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRI---DSGFFQSMPRLNVLN  107 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~  107 (386)
                      ...+.+.+.++..+|.  .+++++++|++++|.+..++..  ..+++|+.|++++| .+...   +.. +..+++|++|+
T Consensus         9 ~~~l~c~~~~l~~ip~--~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~   84 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLD   84 (306)
T ss_dssp             TTEEECCSSCCSSCCS--CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEE
T ss_pred             CCEEEcCCCCcccCCC--CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccc-cccccccCEEE
Confidence            3467888888988886  2223899999999999987764  78999999999998 66544   334 56799999999


Q ss_pred             ccCCccccccchhhcCCCccCEEEcCCCCCCcccH--hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCC
Q 040192          108 LSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPK--ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGY  185 (386)
Q Consensus       108 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  185 (386)
                      +++| .+..+|..+..+++|++|++++|.++.++.  .+..+++|+.|++++|.. ...+...+..+++|++|++++|.+
T Consensus        85 Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A           85 LSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             CCSC-SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECTTCEE
T ss_pred             CCCC-ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECCCCcc
Confidence            9999 888888788899999999999998887763  678889999999999944 444444488889999999998877


Q ss_pred             ccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCC
Q 040192          186 SYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKEL  265 (386)
Q Consensus       186 ~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  265 (386)
                      .+.                    ..+..+..+++|+.|++++|+... .....+.         .+++|+.|++++| .+
T Consensus       163 ~~~--------------------~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~---------~l~~L~~L~L~~N-~l  211 (306)
T 2z66_A          163 QEN--------------------FLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFN---------SLSSLQVLNMSHN-NF  211 (306)
T ss_dssp             GGG--------------------EECSCCTTCTTCCEEECTTSCCCE-ECTTTTT---------TCTTCCEEECTTS-CC
T ss_pred             ccc--------------------cchhHHhhCcCCCEEECCCCCcCC-cCHHHhc---------CCCCCCEEECCCC-cc
Confidence            652                    012345667888999998886554 3334443         6788999999888 45


Q ss_pred             Cccc--cccCCCCCcEEeecCCCccchhhccCcccccCCCCccc-ccceeeecccc
Q 040192          266 KDLT--FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFA-QFHFLCFSYLP  318 (386)
Q Consensus       266 ~~~~--~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~  318 (386)
                      +.++  .+..+++|+.|++++|. +.....       ..+..++ +|++|++++++
T Consensus       212 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-------~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          212 FSLDTFPYKCLNSLQVLDYSLNH-IMTSKK-------QELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             SBCCSGGGTTCTTCCEEECTTSC-CCBCSS-------SSCCCCCTTCCEEECTTCC
T ss_pred             CccChhhccCcccCCEeECCCCC-CcccCH-------HHHHhhhccCCEEEccCCC
Confidence            5543  36678888888888865 555444       2555664 88888888874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=2.7e-22  Score=181.39  Aligned_cols=244  Identities=18%  Similarity=0.187  Sum_probs=193.2

Q ss_pred             ccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc---chhhcCCCccCEEEc
Q 040192           56 VRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF---PLGISKLISLQHLDL  132 (386)
Q Consensus        56 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l  132 (386)
                      -+.++.+++.+..+|.. -.++|+.|++++| .+..++..+++.+++|++|++++| .+...   +..+..+++|++|++
T Consensus         9 ~~~l~c~~~~l~~ip~~-~~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPTG-IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TTEEECCSSCCSSCCSC-CCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CCEEEcCCCCcccCCCC-CCCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEEC
Confidence            35788888888887763 3479999999999 788888887899999999999999 77644   567778999999999


Q ss_pred             CCCCCCcccHhhhccCCCCEEEccCCccccccch-hhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccc
Q 040192          133 SNTGIAELPKELNALVNLTCLNLEETWRLTVIPR-RLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDV  211 (386)
Q Consensus       133 ~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~  211 (386)
                      ++|.+..+|..+..+++|+.|++++| .+..++. ..+..+++|+.|++++|.+...                     .+
T Consensus        86 s~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~  143 (306)
T 2z66_A           86 SFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVA---------------------FN  143 (306)
T ss_dssp             CSCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEEC---------------------ST
T ss_pred             CCCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCcc---------------------ch
Confidence            99999999888889999999999999 4455543 4488999999999999877654                     12


Q ss_pred             cccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc--ccccCCCCCcEEeecCCCccc
Q 040192          212 SALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL--TFLIFAPNLKSIEVDSCYALE  289 (386)
Q Consensus       212 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~c~~~~  289 (386)
                      ..+..+++|++|++++|.......+..+.         .+++|+.|++++| .++.+  ..+..+++|+.|++++|. ++
T Consensus       144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~  212 (306)
T 2z66_A          144 GIFNGLSSLEVLKMAGNSFQENFLPDIFT---------ELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FF  212 (306)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECSCCT---------TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CS
T ss_pred             hhcccCcCCCEEECCCCccccccchhHHh---------hCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cC
Confidence            34566789999999998765423334444         7899999999999 56654  357889999999999965 66


Q ss_pred             hhhccCcccccCCCCcccccceeeeccccccccccCCCcCCC-CccEEeecCcc
Q 040192          290 EIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFP-HLKEMKVIHCL  342 (386)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~i~~c~  342 (386)
                      .+..       ..+..+++|++|+++++.-....+.....++ +|+.|++++++
T Consensus       213 ~~~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          213 SLDT-------FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             BCCS-------GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ccCh-------hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            6544       2567889999999999943333444566674 99999998853

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=1.4e-21  Score=178.76  Aligned_cols=257  Identities=16%  Similarity=0.252  Sum_probs=185.9

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLS  133 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~  133 (386)
                      +++.++++++.+..+|... .++|+.|++++| .+..+++..+..+++|++|++++| .+..+ |..++.+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence            6899999999998887653 479999999999 788877666899999999999999 78766 7789999999999999


Q ss_pred             CCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc----cCCCcCccccccc-ceeecCC
Q 040192          134 NTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS----DGMIGNGEFEQLC-GFRRSKS  208 (386)
Q Consensus       134 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~-~~~~~~~  208 (386)
                      +|.++.+|..+.  ++|++|++++| .+..++...+..+++|+.|++++|.+...    .....+ .|+.+. ..+.+.+
T Consensus       111 ~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            999999887654  89999999999 56677776689999999999999988642    222233 455444 2222222


Q ss_pred             ccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc--cccCCCCCcEEeecCCC
Q 040192          209 LDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT--FLIFAPNLKSIEVDSCY  286 (386)
Q Consensus       209 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~c~  286 (386)
                       .+..+  .++|++|++++|.... .....+.         .+++|+.|++++| .++.++  .+..+++|+.|++++|.
T Consensus       187 -l~~~~--~~~L~~L~l~~n~i~~-~~~~~l~---------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          187 -IPKDL--PETLNELHLDHNKIQA-IELEDLL---------RYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNK  252 (332)
T ss_dssp             -CCSSS--CSSCSCCBCCSSCCCC-CCTTSST---------TCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             -cCccc--cCCCCEEECCCCcCCc-cCHHHhc---------CCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCc
Confidence             11122  2578888888775543 3333333         6778888888887 455543  46777888888888754


Q ss_pred             ccchhhccCcccccCCCCcccccceeeeccccccccccCC-C------cCCCCccEEeecCcc
Q 040192          287 ALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRK-P------LPFPHLKEMKVIHCL  342 (386)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~------~~~~~L~~L~i~~c~  342 (386)
                       ++.++.        .+..+++|++|+++++ .+..++.. .      ..++.|+.|++.+++
T Consensus       253 -l~~lp~--------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          253 -LSRVPA--------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             -CCBCCT--------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             -CeecCh--------hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence             555433        4567788888888877 55555432 1      115677788887765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=4.6e-22  Score=178.06  Aligned_cols=226  Identities=23%  Similarity=0.289  Sum_probs=181.5

Q ss_pred             hccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcC
Q 040192           26 SDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRL  103 (386)
Q Consensus        26 ~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L  103 (386)
                      |.|.......+.+.+.++..+|.  .+++++++|++++|.+..++..  ..+++|++|++++| .+..+.+..+..+++|
T Consensus         6 C~C~~~~~~~~~c~~~~l~~ip~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L   82 (285)
T 1ozn_A            6 CVCYNEPKVTTSCPQQGLQAVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALL   82 (285)
T ss_dssp             CEEECSSSCEEECCSSCCSSCCT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred             ceECCCCCeEEEcCcCCcccCCc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCC
Confidence            44554345788999999999985  2233899999999999997643  88999999999999 7777766568999999


Q ss_pred             ceecccCCcccccc-chhhcCCCccCEEEcCCCCCCcc-cHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEe
Q 040192          104 NVLNLSGAIRLYSF-PLGISKLISLQHLDLSNTGIAEL-PKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIF  181 (386)
Q Consensus       104 ~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  181 (386)
                      ++|++++|..+..+ +..+..+++|++|++++|.++.+ +..+..+++|+.|++++| .+..++...+..+++|++|+++
T Consensus        83 ~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~  161 (285)
T 1ozn_A           83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLH  161 (285)
T ss_dssp             CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECC
Confidence            99999999337776 67789999999999999999877 456788999999999999 5567776668899999999999


Q ss_pred             ccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecC
Q 040192          182 GSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISY  261 (386)
Q Consensus       182 ~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  261 (386)
                      +|.+....                     ...+..+++|+.|++++|.... ..+..+.         .+++|+.|++++
T Consensus       162 ~n~l~~~~---------------------~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~---------~l~~L~~L~l~~  210 (285)
T 1ozn_A          162 GNRISSVP---------------------ERAFRGLHSLDRLLLHQNRVAH-VHPHAFR---------DLGRLMTLYLFA  210 (285)
T ss_dssp             SSCCCEEC---------------------TTTTTTCTTCCEEECCSSCCCE-ECTTTTT---------TCTTCCEEECCS
T ss_pred             CCcccccC---------------------HHHhcCccccCEEECCCCcccc-cCHhHcc---------CcccccEeeCCC
Confidence            99777541                     2235667899999999997654 3344444         789999999999


Q ss_pred             CCCCCccc--cccCCCCCcEEeecCCCc
Q 040192          262 CKELKDLT--FLIFAPNLKSIEVDSCYA  287 (386)
Q Consensus       262 ~~~l~~~~--~l~~l~~L~~L~l~~c~~  287 (386)
                      | .++.++  .+..+++|+.|++++++.
T Consensus       211 n-~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          211 N-NLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             S-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             C-cCCcCCHHHcccCcccCEEeccCCCc
Confidence            9 566654  378899999999999763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=4e-21  Score=192.67  Aligned_cols=294  Identities=18%  Similarity=0.172  Sum_probs=191.0

Q ss_pred             cccEEEEcCCCCCCCCc--ccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192           32 KEEHLVYAGAGLSETPD--VRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN  107 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~--~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  107 (386)
                      ....+.+.+..+.++|.  +..++ +|++|++++|.+.+++..  ..+++|++|++++| .+..+++..++.+++|++|+
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYS-QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGT-TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCC-cCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence            57889999999988864  78888 999999999999886544  78999999999999 78888887689999999999


Q ss_pred             ccCCccccccc-hhhcCCCccCEEEcCCCCCCcc-cHhhhccCCCCEEEccCCccccccchhhhc--CCCCCcEEEEecc
Q 040192          108 LSGAIRLYSFP-LGISKLISLQHLDLSNTGIAEL-PKELNALVNLTCLNLEETWRLTVIPRRLIS--SFSSLHVLRIFGS  183 (386)
Q Consensus       108 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~~  183 (386)
                      +++| .+..++ ..++++++|++|++++|.++.. |..++.+++|++|++++|. +..++...+.  .+++|++|++++|
T Consensus       104 L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          104 LMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             CCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCC
Confidence            9999 777775 6788999999999999988855 4567789999999999994 4555543343  5689999999998


Q ss_pred             CCcccc--CCCcCccccccc----------------------------ceeecCCcccccccccc--CCcEEEeeccCCc
Q 040192          184 GYSYSD--GMIGNGEFEQLC----------------------------GFRRSKSLDVSALADLK--RLNRLKIAECYGL  231 (386)
Q Consensus       184 ~~~~~~--~~~~l~~L~~L~----------------------------~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~  231 (386)
                      .+.+..  .+..+..|+.+.                            ..+...+..+..+..++  +|+.|++++|+..
T Consensus       182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~  261 (680)
T 1ziw_A          182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN  261 (680)
T ss_dssp             CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred             cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence            877651  223333333321                            11111222233444443  3777777777544


Q ss_pred             cchhcccccccccCccccccCcccEEEecCCCCCCcc--ccccCCCCCcEEeecCCCccchhhcc-CcccccCCCCcccc
Q 040192          232 AELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL--TFLIFAPNLKSIEVDSCYALEEIVSD-VPEVMMGNLNPFAQ  308 (386)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~c~~~~~~~~~-~~~~~~~~~~~~~~  308 (386)
                      . .....+.         .+++|+.|++++|. ++..  ..+..+++|+.|++.++.....+... ........+..+++
T Consensus       262 ~-~~~~~~~---------~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~  330 (680)
T 1ziw_A          262 V-VGNDSFA---------WLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC  330 (680)
T ss_dssp             E-ECTTTTT---------TCTTCCEEECCSCC-BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred             c-cCccccc---------CcccccEeeCCCCc-cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence            3 3333333         56777777777773 4432  23556666777766653211110000 00000024455666


Q ss_pred             cceeeecccccccccc-CCCcCCCCccEEeecCc
Q 040192          309 FHFLCFSYLPNLKSIY-RKPLPFPHLKEMKVIHC  341 (386)
Q Consensus       309 L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~i~~c  341 (386)
                      |++|+++++ .+..++ .....+++|++|++++|
T Consensus       331 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          331 LEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNS  363 (680)
T ss_dssp             CCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTC
T ss_pred             CCEEECCCC-ccCCCChhHhccccCCcEEECCCC
Confidence            666666666 333332 22444566666666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.88  E-value=3.1e-21  Score=191.55  Aligned_cols=150  Identities=24%  Similarity=0.313  Sum_probs=123.6

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+.|.+.++..+|.  .+|+++++|++++|.++.+++.  ..+++|++|++++| .+..+++.+|+++++|++|++++
T Consensus        33 ~~~~~c~~~~l~~vP~--~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~  109 (635)
T 4g8a_A           33 NITYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG  109 (635)
T ss_dssp             TTEEECTTSCCSSCCS--SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCEEECCCCCcCccCC--CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccC
Confidence            5577889999999985  4555899999999999997654  88999999999999 88888887789999999999999


Q ss_pred             Cccccccc-hhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCcccc-ccchhhhcCCCCCcEEEEeccCCcc
Q 040192          111 AIRLYSFP-LGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLT-VIPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       111 ~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      | .+..+| ..|.++++|++|++++|.++.++. .++.+++|++|++++|.... ..|. .++.+++|++|++++|.+..
T Consensus       110 N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          110 N-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             C-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCE
T ss_pred             C-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcccCccccc
Confidence            9 888775 467899999999999999988875 47889999999999984433 2344 37888999999998877654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=9.6e-22  Score=178.30  Aligned_cols=267  Identities=14%  Similarity=0.177  Sum_probs=213.9

Q ss_pred             cccCCCeeechhHH--Hhhhcccc----ccccEEEEcCCCCCC---CC-cccccccCccEEEecC-Ccccc-cCCC-CCC
Q 040192            9 PVETWKCTKEAMLP--RMSSDIEE----EKEEHLVYAGAGLSE---TP-DVRKWEKNVRRLSLME-NQIEN-LSEV-PTC   75 (386)
Q Consensus         9 ~~~~~~~~~~d~~~--~~~~~~~~----~~~~~l~~~~~~l~~---~p-~~~~~~~~L~~L~l~~-~~~~~-~~~~-~~~   75 (386)
                      .+..|... .|.|.  |.++.|..    .....+.+.+..+.+   +| .+..++ +|++|++++ |.+.+ +|.. ..+
T Consensus        23 ~l~~W~~~-~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l  100 (313)
T 1ogq_A           23 TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKL  100 (313)
T ss_dssp             GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGC
T ss_pred             cccCCCCC-CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcC
Confidence            35678653 56777  99988875    356778889988875   55 488888 999999995 88886 6654 899


Q ss_pred             CCCcEEecccCcCCC-cCChhhhcCCCcCceecccCCcccc-ccchhhcCCCccCEEEcCCCCCC-cccHhhhccC-CCC
Q 040192           76 PYLRTLFLNNNAPLR-RIDSGFFQSMPRLNVLNLSGAIRLY-SFPLGISKLISLQHLDLSNTGIA-ELPKELNALV-NLT  151 (386)
Q Consensus        76 ~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~-~L~  151 (386)
                      ++|++|++++| .+. .+|.. +..+++|++|++++| .+. .+|..+..+++|++|++++|.++ .+|..++.++ +|+
T Consensus       101 ~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~  177 (313)
T 1ogq_A          101 TQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT  177 (313)
T ss_dssp             TTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred             CCCCEEECcCC-eeCCcCCHH-HhCCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence            99999999999 665 56655 889999999999999 777 67889999999999999999998 8888999998 999


Q ss_pred             EEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCc
Q 040192          152 CLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGL  231 (386)
Q Consensus       152 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  231 (386)
                      .|++++|.....+|.. +..+. |+.|++++|.+.+.                     .+..+..+++|+.|++++|+..
T Consensus       178 ~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N~l~~~---------------------~~~~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          178 SMTISRNRLTGKIPPT-FANLN-LAFVDLSRNMLEGD---------------------ASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             EEECCSSEEEEECCGG-GGGCC-CSEEECCSSEEEEC---------------------CGGGCCTTSCCSEEECCSSEEC
T ss_pred             EEECcCCeeeccCChH-HhCCc-ccEEECcCCcccCc---------------------CCHHHhcCCCCCEEECCCCcee
Confidence            9999999666577765 77777 99999999977654                     2345667899999999999765


Q ss_pred             cchhcccccccccCccccccCcccEEEecCCCCCC-cc-ccccCCCCCcEEeecCCCccchhhccCcccccCCCCccccc
Q 040192          232 AELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELK-DL-TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQF  309 (386)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~-~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L  309 (386)
                      ...+.  +.         .+++|+.|++++|. ++ .+ ..+..+++|+.|++++|. ++...+        ....+++|
T Consensus       235 ~~~~~--~~---------~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip--------~~~~l~~L  293 (313)
T 1ogq_A          235 FDLGK--VG---------LSKNLNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNN-LCGEIP--------QGGNLQRF  293 (313)
T ss_dssp             CBGGG--CC---------CCTTCCEEECCSSC-CEECCCGGGGGCTTCCEEECCSSE-EEEECC--------CSTTGGGS
T ss_pred             eecCc--cc---------ccCCCCEEECcCCc-ccCcCChHHhcCcCCCEEECcCCc-ccccCC--------CCcccccc
Confidence            43322  32         78999999999995 54 44 457889999999999966 554333        33789999


Q ss_pred             ceeeecccccccccc
Q 040192          310 HFLCFSYLPNLKSIY  324 (386)
Q Consensus       310 ~~L~l~~~~~l~~~~  324 (386)
                      +.|++++++.+...|
T Consensus       294 ~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          294 DVSAYANNKCLCGSP  308 (313)
T ss_dssp             CGGGTCSSSEEESTT
T ss_pred             ChHHhcCCCCccCCC
Confidence            999999998776543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.87  E-value=1.6e-20  Score=192.37  Aligned_cols=152  Identities=18%  Similarity=0.205  Sum_probs=117.3

Q ss_pred             cccEEEEcCCCCCCCC--cccccccCccEEEecCCccc-ccCC-C-CCCCCCcEEecccCcCCCcCChhhhcCCCcCcee
Q 040192           32 KEEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIE-NLSE-V-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVL  106 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~-~~~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  106 (386)
                      ....++++++.+.+++  ++..++ +|+.|++++|... .++. . ..+++|++|++++| .+..+.+..++++++|++|
T Consensus        25 ~l~~LdLs~N~i~~i~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           25 TTERLLLSFNYIRTVTASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             TCCEEEEESCCCCEECSSSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCE
T ss_pred             CcCEEECCCCcCCccChhHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEe
Confidence            5778999998888763  478888 9999999999544 4533 3 88999999999999 7777766558999999999


Q ss_pred             cccCCccccc-cchh--hcCCCccCEEEcCCCCCCccc--HhhhccCCCCEEEccCCccccccchhhhcCC--CCCcEEE
Q 040192          107 NLSGAIRLYS-FPLG--ISKLISLQHLDLSNTGIAELP--KELNALVNLTCLNLEETWRLTVIPRRLISSF--SSLHVLR  179 (386)
Q Consensus       107 ~l~~~~~~~~-~~~~--~~~l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L~  179 (386)
                      ++++| .+.. ++..  ++++++|++|++++|.++.++  ..++.+++|++|++++|......+.. +..+  ++|+.|+
T Consensus       103 ~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~  180 (844)
T 3j0a_A          103 RLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFS  180 (844)
T ss_dssp             ECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCE
T ss_pred             eCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEE
Confidence            99999 7764 4544  889999999999999998653  57889999999999998544433333 5444  5666666


Q ss_pred             EeccCCcc
Q 040192          180 IFGSGYSY  187 (386)
Q Consensus       180 l~~~~~~~  187 (386)
                      ++.|.+..
T Consensus       181 L~~n~l~~  188 (844)
T 3j0a_A          181 LAANSLYS  188 (844)
T ss_dssp             ECCSBSCC
T ss_pred             CCCCcccc
Confidence            66665544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.86  E-value=1.4e-20  Score=178.80  Aligned_cols=242  Identities=17%  Similarity=0.219  Sum_probs=194.6

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLS  133 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~  133 (386)
                      ..+.++..+..+..+|.. -.++++.|++++| .+..++...+..+++|++|++++| .+..+ +..+..+++|++|+++
T Consensus        44 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDG-ISTNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCSSCCSC-CCTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcCcCCCC-CCCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECC
Confidence            456788888888887764 3378999999999 788877666899999999999999 78876 4678999999999999


Q ss_pred             CCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192          134 NTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS  212 (386)
Q Consensus       134 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~  212 (386)
                      +|.++.++. .+..+++|+.|++++| .+..++...+..+++|++|+++++.....                    ....
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~--------------------i~~~  179 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSY--------------------ISEG  179 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE--------------------ECTT
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcce--------------------eCcc
Confidence            999998875 5788999999999999 56777776689999999999998543332                    0123


Q ss_pred             ccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc--ccccCCCCCcEEeecCCCccch
Q 040192          213 ALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL--TFLIFAPNLKSIEVDSCYALEE  290 (386)
Q Consensus       213 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~c~~~~~  290 (386)
                      .+..+++|+.|++++|+... ++  .+.         .+++|+.|++++| .++.+  ..+..+++|+.|+++++. ++.
T Consensus       180 ~~~~l~~L~~L~L~~n~l~~-~~--~~~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~  245 (440)
T 3zyj_A          180 AFEGLSNLRYLNLAMCNLRE-IP--NLT---------PLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQ-IQV  245 (440)
T ss_dssp             TTTTCSSCCEEECTTSCCSS-CC--CCT---------TCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCE
T ss_pred             hhhcccccCeecCCCCcCcc-cc--ccC---------CCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCc-eeE
Confidence            46678899999999996653 32  232         7899999999999 56654  347889999999999954 777


Q ss_pred             hhccCcccccCCCCcccccceeeeccccccccccCC-CcCCCCccEEeecCcc
Q 040192          291 IVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRK-PLPFPHLKEMKVIHCL  342 (386)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~  342 (386)
                      +..       ..+..+++|++|+|+++ .+..++.. ...+++|+.|+++++|
T Consensus       246 ~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          246 IER-------NAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             ECT-------TSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             ECh-------hhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence            765       37888999999999999 77777654 4668999999998643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.86  E-value=1.9e-21  Score=176.77  Aligned_cols=239  Identities=17%  Similarity=0.126  Sum_probs=149.2

Q ss_pred             CccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEc
Q 040192           55 NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDL  132 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  132 (386)
                      ++++|++++|.+..++..  ..+++|++|++++| .+...++  +..+++|++|++++| .+..++    ..++|++|++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L~l  106 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNN-YVQELL----VGPSIETLHA  106 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE--ETTCTTCCEEECCSS-EEEEEE----ECTTCCEEEC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh--hhhcCCCCEEECcCC-cccccc----CCCCcCEEEC
Confidence            667777777766665432  66667777777766 4444433  566677777777666 555544    2366677777


Q ss_pred             CCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192          133 SNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS  212 (386)
Q Consensus       133 ~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~  212 (386)
                      ++|.++.++..  .+++|+.|++++| .+..++...+..+++|+.|++++|.+...                     .+.
T Consensus       107 ~~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------------~~~  162 (317)
T 3o53_A          107 ANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTV---------------------NFA  162 (317)
T ss_dssp             CSSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEE---------------------EGG
T ss_pred             CCCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcc---------------------cHH
Confidence            77766655432  3566777777766 33444433356666777777766655543                     112


Q ss_pred             cc-ccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc-ccccCCCCCcEEeecCCCccch
Q 040192          213 AL-ADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL-TFLIFAPNLKSIEVDSCYALEE  290 (386)
Q Consensus       213 ~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~c~~~~~  290 (386)
                      .+ ..+++|++|++++|.... .+  ...         .+++|+.|++++| .++.+ +.+..+++|+.|++++|. ++.
T Consensus       163 ~~~~~l~~L~~L~L~~N~l~~-~~--~~~---------~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~  228 (317)
T 3o53_A          163 ELAASSDTLEHLNLQYNFIYD-VK--GQV---------VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVL  228 (317)
T ss_dssp             GGGGGTTTCCEEECTTSCCCE-EE--CCC---------CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCE
T ss_pred             HHhhccCcCCEEECCCCcCcc-cc--ccc---------ccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc-ccc
Confidence            22 346778888888876543 21  111         5778888888888 45554 346677888888888854 665


Q ss_pred             hhccCcccccCCCCcccccceeeecccccc-ccccCCCcCCCCccEEeecCcccCcCC
Q 040192          291 IVSDVPEVMMGNLNPFAQFHFLCFSYLPNL-KSIYRKPLPFPHLKEMKVIHCLKLKKL  347 (386)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~i~~c~~L~~l  347 (386)
                      ++.        .+..+++|+.|++++++-. ..++.....+++|+.+++.+++.++..
T Consensus       229 l~~--------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          229 IEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             ECT--------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             hhh--------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence            543        5567788888888887443 234444556778888888777766664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=1.8e-20  Score=178.79  Aligned_cols=242  Identities=19%  Similarity=0.195  Sum_probs=193.1

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLS  133 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~  133 (386)
                      ..+.++..+..+..+|.. -.++++.|++++| .+..+++..+..+++|++|++++| .+..+ +..+..+++|++|+++
T Consensus        55 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQG-IPSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSSCCSC-CCTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCccCCC-CCCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECC
Confidence            356788888888887753 3379999999999 788777666899999999999999 88766 4678899999999999


Q ss_pred             CCCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192          134 NTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS  212 (386)
Q Consensus       134 ~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~  212 (386)
                      +|.++.+|.. +..+++|++|++++| .+..++...+..+++|+.|+++++.....                    ....
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~--------------------i~~~  190 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEY--------------------ISEG  190 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE--------------------ECTT
T ss_pred             CCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccc--------------------cChh
Confidence            9999988754 778999999999999 56778776689999999999998543332                    0123


Q ss_pred             ccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc--ccccCCCCCcEEeecCCCccch
Q 040192          213 ALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL--TFLIFAPNLKSIEVDSCYALEE  290 (386)
Q Consensus       213 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~c~~~~~  290 (386)
                      .+..+++|+.|++++|+... ++  .+.         .+++|+.|++++| .++.+  ..+..+++|+.|++++|. ++.
T Consensus       191 ~~~~l~~L~~L~L~~n~l~~-~~--~~~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~  256 (452)
T 3zyi_A          191 AFEGLFNLKYLNLGMCNIKD-MP--NLT---------PLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQ-VSL  256 (452)
T ss_dssp             TTTTCTTCCEEECTTSCCSS-CC--CCT---------TCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSC-CCE
T ss_pred             hccCCCCCCEEECCCCcccc-cc--ccc---------ccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCc-Cce
Confidence            46678899999999997654 32  232         7899999999999 46654  347889999999999955 776


Q ss_pred             hhccCcccccCCCCcccccceeeeccccccccccCC-CcCCCCccEEeecCcc
Q 040192          291 IVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRK-PLPFPHLKEMKVIHCL  342 (386)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~  342 (386)
                      +..       ..+..+++|++|+|+++ .+..++.. ...+++|+.|+++++|
T Consensus       257 ~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          257 IER-------NAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             ECT-------TTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             ECH-------HHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence            655       37888999999999999 77777654 4668999999998753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.86  E-value=3.9e-20  Score=181.67  Aligned_cols=264  Identities=18%  Similarity=0.159  Sum_probs=204.3

Q ss_pred             HHhhhccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCC
Q 040192           22 PRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMP  101 (386)
Q Consensus        22 ~~~~~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~  101 (386)
                      ....+.|.......+.+.+.++..+|.... + +++.|++++|.+..+|.  .+++|++|++++| .+..+|.    .++
T Consensus        31 ~~~~~~c~~~~l~~L~ls~n~L~~lp~~l~-~-~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~----~l~  101 (622)
T 3g06_A           31 VQKMRACLNNGNAVLNVGESGLTTLPDCLP-A-HITTLVIPDNNLTSLPA--LPPELRTLEVSGN-QLTSLPV----LPP  101 (622)
T ss_dssp             HHHHHHHHHHCCCEEECCSSCCSCCCSCCC-T-TCSEEEECSCCCSCCCC--CCTTCCEEEECSC-CCSCCCC----CCT
T ss_pred             CcccccccCCCCcEEEecCCCcCccChhhC-C-CCcEEEecCCCCCCCCC--cCCCCCEEEcCCC-cCCcCCC----CCC
Confidence            344556666567899999999999986332 5 89999999999998877  7899999999999 7887775    689


Q ss_pred             cCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEe
Q 040192          102 RLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIF  181 (386)
Q Consensus       102 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  181 (386)
                      +|++|++++| .+..+|.   .+++|+.|++++|.++.+|..   +++|++|++++| .+..+|.    .+.+|+.|+++
T Consensus       102 ~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~  169 (622)
T 3g06_A          102 GLLELSIFSN-PLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAY  169 (622)
T ss_dssp             TCCEEEECSC-CCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECC
T ss_pred             CCCEEECcCC-cCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECC
Confidence            9999999999 8888876   678899999999999998864   589999999999 5556654    35789999999


Q ss_pred             ccCCccccCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEec
Q 040192          182 GSGYSYSDGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQIS  260 (386)
Q Consensus       182 ~~~~~~~~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  260 (386)
                      +|.+....  ..+++|+.|. ..+.+.+. +   ..+++|+.|++++|.... ++  .           .+++|+.|+++
T Consensus       170 ~N~l~~l~--~~~~~L~~L~Ls~N~l~~l-~---~~~~~L~~L~L~~N~l~~-l~--~-----------~~~~L~~L~Ls  229 (622)
T 3g06_A          170 NNQLTSLP--MLPSGLQELSVSDNQLASL-P---TLPSELYKLWAYNNRLTS-LP--A-----------LPSGLKELIVS  229 (622)
T ss_dssp             SSCCSCCC--CCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSS-CC--C-----------CCTTCCEEECC
T ss_pred             CCCCCCCc--ccCCCCcEEECCCCCCCCC-C---CccchhhEEECcCCcccc-cC--C-----------CCCCCCEEEcc
Confidence            99888763  4556666665 22232221 1   124789999998886542 21  1           46889999999


Q ss_pred             CCCCCCccccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecC
Q 040192          261 YCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIH  340 (386)
Q Consensus       261 ~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~  340 (386)
                      +| .++.++  ..+++|+.|++++|. ++.++         .  .+++|++|++++| .+..++.....+++|+.|++++
T Consensus       230 ~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp---------~--~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          230 GN-RLTSLP--VLPSELKELMVSGNR-LTSLP---------M--LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             SS-CCSCCC--CCCTTCCEEECCSSC-CSCCC---------C--CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCS
T ss_pred             CC-ccCcCC--CCCCcCcEEECCCCC-CCcCC---------c--ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecC
Confidence            98 577766  567899999999864 66542         2  5688999999998 7778887778899999999988


Q ss_pred             cc
Q 040192          341 CL  342 (386)
Q Consensus       341 c~  342 (386)
                      ++
T Consensus       294 N~  295 (622)
T 3g06_A          294 NP  295 (622)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=2.1e-20  Score=185.62  Aligned_cols=307  Identities=17%  Similarity=0.169  Sum_probs=215.9

Q ss_pred             cccEEEEcCCCCCCCCc--ccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192           32 KEEHLVYAGAGLSETPD--VRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN  107 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~--~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  107 (386)
                      ..+.++++++.+.++|.  +..++ +|++|++++|.++.+++.  ..+++|++|++++| .+..+++..|.++++|++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCC-CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence            46789999999999863  88899 999999999999997654  78999999999999 88999988899999999999


Q ss_pred             ccCCccccccch-hhcCCCccCEEEcCCCCCCc--ccHhhhccCCCCEEEccCCccccccchhhhc--------------
Q 040192          108 LSGAIRLYSFPL-GISKLISLQHLDLSNTGIAE--LPKELNALVNLTCLNLEETWRLTVIPRRLIS--------------  170 (386)
Q Consensus       108 l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--------------  170 (386)
                      +++| .+..++. .++++++|++|++++|.++.  .|..++.+++|++|++++|.. ..++...+.              
T Consensus       131 Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~L~~l~~~~~~~~l  208 (635)
T 4g8a_A          131 AVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDL  208 (635)
T ss_dssp             CTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC-CEECGGGGHHHHTCTTCCCEEEC
T ss_pred             CCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc-cccccccccchhhhhhhhhhhhc
Confidence            9999 8888764 58999999999999999874  567888999999999988843 222110010              


Q ss_pred             --------------------------------------------------------------------------------
Q 040192          171 --------------------------------------------------------------------------------  170 (386)
Q Consensus       171 --------------------------------------------------------------------------------  170 (386)
                                                                                                      
T Consensus       209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~  288 (635)
T 4g8a_A          209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  288 (635)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred             ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence                                                                                            


Q ss_pred             -------------------------------------CCCCCcEEEEeccCCccc---------------------cCCC
Q 040192          171 -------------------------------------SFSSLHVLRIFGSGYSYS---------------------DGMI  192 (386)
Q Consensus       171 -------------------------------------~l~~L~~L~l~~~~~~~~---------------------~~~~  192 (386)
                                                           ....|+.|++.++.+...                     ....
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~  368 (635)
T 4g8a_A          289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV  368 (635)
T ss_dssp             ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred             hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence                                                 011122222222211110                     0000


Q ss_pred             cCccccccc--------------------------------------------------ceeec-CCccccccccccCCc
Q 040192          193 GNGEFEQLC--------------------------------------------------GFRRS-KSLDVSALADLKRLN  221 (386)
Q Consensus       193 ~l~~L~~L~--------------------------------------------------~~~~~-~~~~~~~l~~~~~L~  221 (386)
                      .++.|+.+.                                                  ..... .......+..+++++
T Consensus       369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~  448 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  448 (635)
T ss_dssp             BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred             cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence            112222221                                                  00000 111234566788999


Q ss_pred             EEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc--ccccCCCCCcEEeecCCCccchhhccCcccc
Q 040192          222 RLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL--TFLIFAPNLKSIEVDSCYALEEIVSDVPEVM  299 (386)
Q Consensus       222 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~  299 (386)
                      .++++.|.... .....+.         .++.++.|++++|.....+  ..+..+++|+.|+|++|. ++.++.      
T Consensus       449 ~l~ls~n~l~~-~~~~~~~---------~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~------  511 (635)
T 4g8a_A          449 YLDISHTHTRV-AFNGIFN---------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP------  511 (635)
T ss_dssp             EEECTTSCCEE-CCTTTTT---------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT------
T ss_pred             ccccccccccc-ccccccc---------cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcCh------
Confidence            99999886654 2233333         6899999999999655543  346788999999999964 777766      


Q ss_pred             cCCCCcccccceeeeccccccccccC-CCcCCCCccEEeecCcccCcCCCCCc-ccccCcceEEE
Q 040192          300 MGNLNPFAQFHFLCFSYLPNLKSIYR-KPLPFPHLKEMKVIHCLKLKKLPLDS-NRAKERKIVIR  362 (386)
Q Consensus       300 ~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~~~-~~~~~~l~i~~  362 (386)
                       ..+..+++|++|+|+++ .+..++. ....+++|+.|++++ ++++.++... ......++.++
T Consensus       512 -~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~  573 (635)
T 4g8a_A          512 -TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLN  573 (635)
T ss_dssp             -TTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEE
T ss_pred             -HHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEE
Confidence             37889999999999999 6777654 356789999999998 4788876543 33324444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=3.5e-20  Score=170.98  Aligned_cols=267  Identities=17%  Similarity=0.154  Sum_probs=199.1

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLS  133 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~  133 (386)
                      .....+.+++.++.+|.. -.++|++|++++| .+..++...+..+++|++|++++| .+..+ +..+..+++|++|+++
T Consensus        32 ~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           32 RNGICKGSSGSLNSIPSG-LTEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             TTSEEECCSTTCSSCCTT-CCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             CCeEeeCCCCCccccccc-ccccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECC
Confidence            344578888888888764 3369999999999 788888766899999999999999 88876 5678999999999999


Q ss_pred             CCCCCcccHh-hhccCCCCEEEccCCccccccch-hhhcCCCCCcEEEEeccC-CccccCCCcCcccccccceeecCCcc
Q 040192          134 NTGIAELPKE-LNALVNLTCLNLEETWRLTVIPR-RLISSFSSLHVLRIFGSG-YSYSDGMIGNGEFEQLCGFRRSKSLD  210 (386)
Q Consensus       134 ~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~~~~~~~~~~  210 (386)
                      +|.++.++.. ++.+++|++|++++| .+..++. ..+..+++|++|++++|. +...                     .
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~---------------------~  166 (353)
T 2z80_A          109 YNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKI---------------------Q  166 (353)
T ss_dssp             SSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEE---------------------C
T ss_pred             CCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccccc---------------------C
Confidence            9999998865 789999999999999 5567776 458899999999999984 3332                     1


Q ss_pred             ccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc--ccCCCCCcEEeecCCCcc
Q 040192          211 VSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF--LIFAPNLKSIEVDSCYAL  288 (386)
Q Consensus       211 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--l~~l~~L~~L~l~~c~~~  288 (386)
                      +..+..+++|++|++++|+... .....+.         .+++|++|++++|. ++.++.  ...+++|+.|++++|. +
T Consensus       167 ~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~---------~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l  234 (353)
T 2z80_A          167 RKDFAGLTFLEELEIDASDLQS-YEPKSLK---------SIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-L  234 (353)
T ss_dssp             TTTTTTCCEEEEEEEEETTCCE-ECTTTTT---------TCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-C
T ss_pred             HHHccCCCCCCEEECCCCCcCc-cCHHHHh---------ccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc-c
Confidence            2346678899999999997654 3344444         78999999999994 666543  4568999999999965 6


Q ss_pred             chhhccCcccccCCCCcccccceeeecccc----ccccccCCCcCCCCccEEeecCcccCcCCCCCcccccCcceEEEc
Q 040192          289 EEIVSDVPEVMMGNLNPFAQFHFLCFSYLP----NLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIRG  363 (386)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~i~~~  363 (386)
                      +.......    ......+.++.++++++.    .+..++.....+++|+.|+++++ +++.+|.........++.++.
T Consensus       235 ~~~~~~~l----~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L  308 (353)
T 2z80_A          235 DTFHFSEL----STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWL  308 (353)
T ss_dssp             TTCCCC----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             cccccccc----ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEe
Confidence            65433210    122345667777777662    22234545667999999999995 899998875322244444433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=3.4e-20  Score=161.49  Aligned_cols=214  Identities=14%  Similarity=0.275  Sum_probs=150.1

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+.+.+  +.++|.   ++.++++|++++|.+..++..  ..+++|++|++++|..+..+++..+..+++|++|++++
T Consensus        15 ~~~v~c~~--l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~   89 (239)
T 2xwt_C           15 DFRVTCKD--IQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN   89 (239)
T ss_dssp             TTEEEECS--CSSCCC---CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred             cceeEccC--ccccCC---CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence            44555655  777887   343899999999999987663  78999999999998337788776688899999999988


Q ss_pred             -Cccccccc-hhhcCCCccCEEEcCCCCCCcccHhhhccCCCC---EEEccCCccccccchhhhcCCCCCc-EEEEeccC
Q 040192          111 -AIRLYSFP-LGISKLISLQHLDLSNTGIAELPKELNALVNLT---CLNLEETWRLTVIPRRLISSFSSLH-VLRIFGSG  184 (386)
Q Consensus       111 -~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~  184 (386)
                       + .+..++ ..+..+++|++|++++|.++.+|. +..+++|+   .|++++|..+..++...+..+++|+ .|++++|.
T Consensus        90 ~n-~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C           90 TR-NLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             ET-TCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred             CC-CeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence             6 777765 467888899999999988888876 77777777   8888888556666665577788888 88888776


Q ss_pred             CccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCcccccc-CcccEEEecCCC
Q 040192          185 YSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVF-HSLKKFQISYCK  263 (386)
Q Consensus       185 ~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~  263 (386)
                      +....                     ...+.. ++|+.|++++|+.+..++...+.         .+ ++|+.|++++| 
T Consensus       168 l~~i~---------------------~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~---------~l~~~L~~L~l~~N-  215 (239)
T 2xwt_C          168 FTSVQ---------------------GYAFNG-TKLDAVYLNKNKYLTVIDKDAFG---------GVYSGPSLLDVSQT-  215 (239)
T ss_dssp             CCEEC---------------------TTTTTT-CEEEEEECTTCTTCCEECTTTTT---------TCSBCCSEEECTTC-
T ss_pred             CcccC---------------------HhhcCC-CCCCEEEcCCCCCcccCCHHHhh---------ccccCCcEEECCCC-
Confidence            65431                     011222 46777777777433334444443         45 67777777776 


Q ss_pred             CCCccccccCCCCCcEEeecCCC
Q 040192          264 ELKDLTFLIFAPNLKSIEVDSCY  286 (386)
Q Consensus       264 ~l~~~~~l~~l~~L~~L~l~~c~  286 (386)
                      .++.++.. .+++|+.|++.++.
T Consensus       216 ~l~~l~~~-~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          216 SVTALPSK-GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCCCCCT-TCTTCSEEECTTC-
T ss_pred             ccccCChh-HhccCceeeccCcc
Confidence            35554433 56666666666643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.84  E-value=6.9e-20  Score=163.86  Aligned_cols=218  Identities=17%  Similarity=0.233  Sum_probs=162.6

Q ss_pred             cEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcCCC
Q 040192           57 RRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLSNT  135 (386)
Q Consensus        57 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~  135 (386)
                      ++++.+++.+..+|. ...++|+.|++++| .+..++...+..+++|++|++++| .+..+ +..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCT-TCCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCc-CCCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC
Confidence            577788888887765 34578999999998 777777666888999999999988 77766 667888999999999998


Q ss_pred             C-CCcc-cHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccc
Q 040192          136 G-IAEL-PKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSA  213 (386)
Q Consensus       136 ~-i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~  213 (386)
                      . +..+ +..+..+++|+.|++++| .+..++...+..+++|++|++++|.+...                     ....
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~~  148 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQAL---------------------PDDT  148 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------------CTTT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCccccc---------------------CHhH
Confidence            6 7766 567788899999999998 44555444578889999999988877654                     1223


Q ss_pred             cccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc--ccccCCCCCcEEeecCCCccchh
Q 040192          214 LADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL--TFLIFAPNLKSIEVDSCYALEEI  291 (386)
Q Consensus       214 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~c~~~~~~  291 (386)
                      +..+++|++|++++|+... .+...+.         .+++|+.|++++|. ++.+  ..+..+++|+.|++++|. ++.+
T Consensus       149 ~~~l~~L~~L~l~~n~l~~-~~~~~~~---------~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~  216 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGNRISS-VPERAFR---------GLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN-LSAL  216 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCE-ECTTTTT---------TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCC
T ss_pred             hccCCCccEEECCCCcccc-cCHHHhc---------CccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCc-CCcC
Confidence            5567888888888886543 4433343         67888888888884 5543  346778888888888854 6655


Q ss_pred             hccCcccccCCCCcccccceeeecccc
Q 040192          292 VSDVPEVMMGNLNPFAQFHFLCFSYLP  318 (386)
Q Consensus       292 ~~~~~~~~~~~~~~~~~L~~L~l~~~~  318 (386)
                      +..       .+..+++|++|++++++
T Consensus       217 ~~~-------~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          217 PTE-------ALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CHH-------HHTTCTTCCEEECCSSC
T ss_pred             CHH-------HcccCcccCEEeccCCC
Confidence            442       45677888888888874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=3.7e-20  Score=177.85  Aligned_cols=231  Identities=17%  Similarity=0.119  Sum_probs=168.9

Q ss_pred             CccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEc
Q 040192           55 NVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDL  132 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  132 (386)
                      +|++|++++|.+.++++  ...+++|++|++++| .+...++  +..+++|++|++++| .+..++.    .++|++|++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEEC
Confidence            78889999888888653  378888999999888 6655544  678888999998888 7776653    378888999


Q ss_pred             CCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192          133 SNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS  212 (386)
Q Consensus       133 ~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~  212 (386)
                      ++|.++.++.  ..+++|+.|++++|.. ..+++..++.+++|+.|++++|.+.+.                     .+.
T Consensus       107 ~~N~l~~~~~--~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------------~~~  162 (487)
T 3oja_A          107 ANNNISRVSC--SRGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTV---------------------NFA  162 (487)
T ss_dssp             CSSCCCCEEE--CCCSSCEEEECCSSCC-CSGGGBCGGGGSSEEEEECTTSCCCEE---------------------EGG
T ss_pred             cCCcCCCCCc--cccCCCCEEECCCCCC-CCCCchhhcCCCCCCEEECCCCCCCCc---------------------ChH
Confidence            8888887664  2467888889888844 444333378888888888888877764                     122


Q ss_pred             ccc-cccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc-ccccCCCCCcEEeecCCCccch
Q 040192          213 ALA-DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL-TFLIFAPNLKSIEVDSCYALEE  290 (386)
Q Consensus       213 ~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~c~~~~~  290 (386)
                      .+. .+++|+.|++++|.... .+  ...         .+++|+.|++++| .++.+ +.+..+++|+.|++++|. +..
T Consensus       163 ~l~~~l~~L~~L~Ls~N~l~~-~~--~~~---------~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~-l~~  228 (487)
T 3oja_A          163 ELAASSDTLEHLNLQYNFIYD-VK--GQV---------VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVL  228 (487)
T ss_dssp             GGGGGTTTCCEEECTTSCCCE-EE--CCC---------CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCE
T ss_pred             HHhhhCCcccEEecCCCcccc-cc--ccc---------cCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCc-Ccc
Confidence            333 57889999999987654 21  111         6789999999998 46654 457788999999999855 666


Q ss_pred             hhccCcccccCCCCcccccceeeecccccc-ccccCCCcCCCCccEEeec
Q 040192          291 IVSDVPEVMMGNLNPFAQFHFLCFSYLPNL-KSIYRKPLPFPHLKEMKVI  339 (386)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~i~  339 (386)
                      ++.        .+..+++|+.|++++++.. ..++.....++.|+.+.+.
T Consensus       229 lp~--------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          229 IEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             ECT--------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             cch--------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            543        5677889999999998544 2344445567778777775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.83  E-value=1.5e-18  Score=165.13  Aligned_cols=177  Identities=19%  Similarity=0.248  Sum_probs=118.7

Q ss_pred             cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192           32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA  111 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  111 (386)
                      ....+.+.+.++.++|.+  .+ ++++|++++|.+.++|..  .++|+.|++++| .+..++..    .++|++|++++|
T Consensus        72 ~l~~L~l~~~~l~~lp~~--~~-~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n-~l~~l~~~----~~~L~~L~L~~n  141 (454)
T 1jl5_A           72 QAHELELNNLGLSSLPEL--PP-HLESLVASCNSLTELPEL--PQSLKSLLVDNN-NLKALSDL----PPLLEYLGVSNN  141 (454)
T ss_dssp             TCSEEECTTSCCSCCCSC--CT-TCSEEECCSSCCSSCCCC--CTTCCEEECCSS-CCSCCCSC----CTTCCEEECCSS
T ss_pred             CCCEEEecCCccccCCCC--cC-CCCEEEccCCcCCccccc--cCCCcEEECCCC-ccCcccCC----CCCCCEEECcCC
Confidence            457888888888888764  23 888999998888887643  477888888887 55555431    267888888887


Q ss_pred             ccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCC
Q 040192          112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGM  191 (386)
Q Consensus       112 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  191 (386)
                       .+..+| .++.+++|++|++++|.++.+|..   ..+|++|++++| .+..+|.  ++.+++|++|++++|.+.+..  
T Consensus       142 -~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l~--  211 (454)
T 1jl5_A          142 -QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLP--  211 (454)
T ss_dssp             -CCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCC--
T ss_pred             -CCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcCC--
Confidence             777776 577788888888888877777643   247888888887 4455663  777788888888877776542  


Q ss_pred             CcCccccccc-ceeecCCccccccccccCCcEEEeeccCC
Q 040192          192 IGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYG  230 (386)
Q Consensus       192 ~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  230 (386)
                      .....|+.+. ..+.... .+ .+..+++|+.|++++|+.
T Consensus       212 ~~~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          212 DLPLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             CCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC
T ss_pred             CCcCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcC
Confidence            2223555554 2222221 11 355666777777766644

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=2.3e-19  Score=162.20  Aligned_cols=204  Identities=22%  Similarity=0.303  Sum_probs=153.9

Q ss_pred             CCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhh
Q 040192           42 GLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGI  121 (386)
Q Consensus        42 ~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  121 (386)
                      .+.++.....++ ++++|+++++.+..++....+++|+.|++++| .+..+++  +..+++|++|++++| .+..++ .+
T Consensus        30 ~~~~~~~~~~l~-~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~  103 (308)
T 1h6u_A           30 NVTDTVTQADLD-GITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGN-PLKNVS-AI  103 (308)
T ss_dssp             STTSEECHHHHH-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GG
T ss_pred             CcCceecHHHcC-CcCEEEeeCCCccCchhhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCC-cCCCch-hh
Confidence            344444566777 89999999998888877788889999999888 7777766  778888999999888 777765 57


Q ss_pred             cCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCccccccc
Q 040192          122 SKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLC  201 (386)
Q Consensus       122 ~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  201 (386)
                      ..+++|++|++++|.++.++. +..+++|+.|++++| .+..++.  +..+++|+.|++++|.+...             
T Consensus       104 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~-------------  166 (308)
T 1h6u_A          104 AGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSDL-------------  166 (308)
T ss_dssp             TTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCC-------------
T ss_pred             cCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCCC-------------
Confidence            788888888888888887764 778888888888888 5556665  77888888888888876654             


Q ss_pred             ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEe
Q 040192          202 GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIE  281 (386)
Q Consensus       202 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~  281 (386)
                                ..+..+++|+.|++++|+... ...  +.         .+++|+.|++++| .++.++.+..+++|+.|+
T Consensus       167 ----------~~l~~l~~L~~L~l~~n~l~~-~~~--l~---------~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~  223 (308)
T 1h6u_A          167 ----------TPLANLSKLTTLKADDNKISD-ISP--LA---------SLPNLIEVHLKNN-QISDVSPLANTSNLFIVT  223 (308)
T ss_dssp             ----------GGGTTCTTCCEEECCSSCCCC-CGG--GG---------GCTTCCEEECTTS-CCCBCGGGTTCTTCCEEE
T ss_pred             ----------hhhcCCCCCCEEECCCCccCc-Chh--hc---------CCCCCCEEEccCC-ccCccccccCCCCCCEEE
Confidence                      114556788888888876543 222  22         6788888888888 566666677788888888


Q ss_pred             ecCCCccchhh
Q 040192          282 VDSCYALEEIV  292 (386)
Q Consensus       282 l~~c~~~~~~~  292 (386)
                      +++++ ++..+
T Consensus       224 l~~N~-i~~~~  233 (308)
T 1h6u_A          224 LTNQT-ITNQP  233 (308)
T ss_dssp             EEEEE-EECCC
T ss_pred             ccCCe-eecCC
Confidence            88754 55443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.83  E-value=1.9e-20  Score=170.18  Aligned_cols=263  Identities=16%  Similarity=0.133  Sum_probs=201.6

Q ss_pred             cccEEEEcCCCCCCCC--cccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192           32 KEEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS  109 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  109 (386)
                      ....+.+.+..+.+++  .+..++ +|++|++++|.+.+.++...+++|++|++++| .+..++     ..++|++|+++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n-~l~~l~-----~~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNN-YVQELL-----VGPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEEETTCTTCCEEECCSS-EEEEEE-----ECTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchhhhhcCCCCEEECcCC-cccccc-----CCCCcCEEECC
Confidence            4788999999999886  478888 99999999999998766889999999999999 666544     45899999999


Q ss_pred             CCccccccchhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192          110 GAIRLYSFPLGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      +| .+..++..  .+++|+.|++++|.++.++. .++.+++|+.|++++|......+..+...+++|++|++++|.+...
T Consensus       108 ~n-~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  184 (317)
T 3o53_A          108 NN-NISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (317)
T ss_dssp             SS-CCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CC-ccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence            99 88876532  47889999999999997754 6778999999999999544434444345899999999999987765


Q ss_pred             cCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc
Q 040192          189 DGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL  268 (386)
Q Consensus       189 ~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  268 (386)
                      .                       ....+++|+.|++++|+... ++.. +.         .+++|+.|++++| .++.+
T Consensus       185 ~-----------------------~~~~l~~L~~L~Ls~N~l~~-l~~~-~~---------~l~~L~~L~L~~N-~l~~l  229 (317)
T 3o53_A          185 K-----------------------GQVVFAKLKTLDLSSNKLAF-MGPE-FQ---------SAAGVTWISLRNN-KLVLI  229 (317)
T ss_dssp             E-----------------------CCCCCTTCCEEECCSSCCCE-ECGG-GG---------GGTTCSEEECTTS-CCCEE
T ss_pred             c-----------------------cccccccCCEEECCCCcCCc-chhh-hc---------ccCcccEEECcCC-cccch
Confidence            1                       12236899999999997654 4333 33         7899999999999 56665


Q ss_pred             c-cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcC
Q 040192          269 T-FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKK  346 (386)
Q Consensus       269 ~-~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~  346 (386)
                      + .+..+++|+.|++++++.......       ..+..+++|+.|++.++..++.........+.+....-..|..+..
T Consensus       230 ~~~~~~l~~L~~L~l~~N~~~~~~~~-------~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~  301 (317)
T 3o53_A          230 EKALRFSQNLEHFDLRGNGFHCGTLR-------DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA  301 (317)
T ss_dssp             CTTCCCCTTCCEEECTTCCCBHHHHH-------HHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTT
T ss_pred             hhHhhcCCCCCEEEccCCCccCcCHH-------HHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCCh
Confidence            4 467889999999999774424333       2667889999999998877776544443344444444445665543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.83  E-value=7.1e-19  Score=167.37  Aligned_cols=121  Identities=19%  Similarity=0.314  Sum_probs=57.8

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN  134 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  134 (386)
                      ++++|++++|.+.++|....+++|++|++++| .+..+|..    ..+|++|++++| .+..+| .++.+++|++|++++
T Consensus       132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N-~l~~lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLKKLPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADN  204 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred             CCCEEECcCCCCCCCcccCCCCCCCEEECCCC-cCcccCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEECCC
Confidence            44444444444444443344444444444444 33333321    124444444444 444443 344555555555555


Q ss_pred             CCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192          135 TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       135 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      |.++.+|..   .++|+.|++++| .+..+|.  ++.+++|+.|++++|.+...
T Consensus       205 N~l~~l~~~---~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l  252 (454)
T 1jl5_A          205 NSLKKLPDL---PLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTL  252 (454)
T ss_dssp             SCCSSCCCC---CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSC
T ss_pred             CcCCcCCCC---cCcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCcc
Confidence            555544432   135555555555 3334553  55666666666666655543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=5.8e-19  Score=156.52  Aligned_cols=208  Identities=21%  Similarity=0.348  Sum_probs=145.7

Q ss_pred             hHHHhhhccccc-cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhh
Q 040192           20 MLPRMSSDIEEE-KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGF   96 (386)
Q Consensus        20 ~~~~~~~~~~~~-~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~   96 (386)
                      .+.|.+..|.-. ....+.+.+.++..+|..  +++++++|++++|.+..++.  ...+++|++|++++| .+..++..+
T Consensus         4 ~C~~~~~~C~c~~~~~~l~~~~~~l~~ip~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~   80 (270)
T 2o6q_A            4 LCKKDGGVCSCNNNKNSVDCSSKKLTAIPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGI   80 (270)
T ss_dssp             CBGGGTCSBEEETTTTEEECTTSCCSSCCSC--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTT
T ss_pred             cCCCCCCCCEeCCCCCEEEccCCCCCccCCC--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhh
Confidence            444655555432 356788888888888752  22378889998888888665  378888888888888 777777776


Q ss_pred             hcCCCcCceecccCCccccccc-hhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCC
Q 040192           97 FQSMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSS  174 (386)
Q Consensus        97 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  174 (386)
                      +..+++|++|++++| .+..++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++| .+..++...+..+++
T Consensus        81 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~  158 (270)
T 2o6q_A           81 FKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTS  158 (270)
T ss_dssp             TSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             hcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcc
Confidence            788888888888888 777665 355778888888888888876654 4577888888888888 556666655777888


Q ss_pred             CcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcc
Q 040192          175 LHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSL  254 (386)
Q Consensus       175 L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  254 (386)
                      |++|++++|.+....                     ...+..+++|+.|++++|+... ++...+.         .+++|
T Consensus       159 L~~L~L~~n~l~~~~---------------------~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~---------~l~~L  207 (270)
T 2o6q_A          159 LKELRLYNNQLKRVP---------------------EGAFDKLTELKTLKLDNNQLKR-VPEGAFD---------SLEKL  207 (270)
T ss_dssp             CCEEECCSSCCSCCC---------------------TTTTTTCTTCCEEECCSSCCSC-CCTTTTT---------TCTTC
T ss_pred             cceeEecCCcCcEeC---------------------hhHhccCCCcCEEECCCCcCCc-CCHHHhc---------cccCC
Confidence            888888877665541                     1224456677777777775432 3333333         56677


Q ss_pred             cEEEecCCC
Q 040192          255 KKFQISYCK  263 (386)
Q Consensus       255 ~~L~l~~~~  263 (386)
                      +.|++++|+
T Consensus       208 ~~L~l~~N~  216 (270)
T 2o6q_A          208 KMLQLQENP  216 (270)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEecCCC
Confidence            777777664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=1.9e-18  Score=169.66  Aligned_cols=251  Identities=20%  Similarity=0.167  Sum_probs=196.0

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN  134 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  134 (386)
                      +++.|+++++.+..+|.... ++|+.|++++| .+..+|.    .+++|++|++++| .+..+|.   .+++|++|++++
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~  110 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS  110 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC-TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred             CCcEEEecCCCcCccChhhC-CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence            68999999999998887533 89999999999 7888776    5799999999999 8888876   779999999999


Q ss_pred             CCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCccccccc-ceeecCCccccc
Q 040192          135 TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLC-GFRRSKSLDVSA  213 (386)
Q Consensus       135 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~-~~~~~~~~~~~~  213 (386)
                      |.++.+|.   .+++|+.|++++| .+..+|..    +++|++|++++|.+....  ..+.+|+.|. ..+.+.+. +  
T Consensus       111 N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l~--~~~~~L~~L~L~~N~l~~l-~--  177 (622)
T 3g06_A          111 NPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLP--ALPSELCKLWAYNNQLTSL-P--  177 (622)
T ss_dssp             CCCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCC-C--
T ss_pred             CcCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCcC--CccCCCCEEECCCCCCCCC-c--
Confidence            99999886   5789999999999 56677763    489999999999888752  3445666665 22222221 1  


Q ss_pred             cccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhc
Q 040192          214 LADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVS  293 (386)
Q Consensus       214 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~  293 (386)
                       ..+++|+.|++++|+... +  ..           .+++|+.|++++| .++.++.  .+++|+.|++++|. ++.++ 
T Consensus       178 -~~~~~L~~L~Ls~N~l~~-l--~~-----------~~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N~-L~~lp-  237 (622)
T 3g06_A          178 -MLPSGLQELSVSDNQLAS-L--PT-----------LPSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNR-LTSLP-  237 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSC-C--CC-----------CCTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCC-
T ss_pred             -ccCCCCcEEECCCCCCCC-C--CC-----------ccchhhEEECcCC-cccccCC--CCCCCCEEEccCCc-cCcCC-
Confidence             346899999999986543 1  11           4689999999999 5776653  35899999999964 66652 


Q ss_pred             cCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCCcccccCcceEEEch
Q 040192          294 DVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIRGS  364 (386)
Q Consensus       294 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~i~~~~  364 (386)
                                ..+++|++|+++++ .+..++.   .+++|+.|++++| +++.+|...... ..++.++..
T Consensus       238 ----------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l-~~L~~L~L~  292 (622)
T 3g06_A          238 ----------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHL-SSETTVNLE  292 (622)
T ss_dssp             ----------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGS-CTTCEEECC
T ss_pred             ----------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhc-cccCEEEec
Confidence                      35689999999999 7887775   6899999999996 888998765544 455555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.81  E-value=8.4e-19  Score=156.01  Aligned_cols=216  Identities=21%  Similarity=0.218  Sum_probs=162.5

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+.+.+..+..+|.  .+++++++|++++|.+..++.  ...+++|++|++++| .+..+++..+..+++|++|++++
T Consensus         9 ~~~~~c~~~~l~~ip~--~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A            9 NITYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             TTEEECTTSCCSSCCS--SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred             CceEEecCCCccccCC--CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCC
Confidence            4567788888888876  233379999999999998764  388999999999999 77777776688999999999999


Q ss_pred             Cccccccc-hhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCcccc-ccchhhhcCCCCCcEEEEeccCCcc
Q 040192          111 AIRLYSFP-LGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLT-VIPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       111 ~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      | .+..++ ..+..+++|++|++++|.+..++. .++.+++|++|++++|.... .+|.. +..+++|++|++++|.+..
T Consensus        86 n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A           86 N-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             C-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred             C-ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCc
Confidence            9 777664 678899999999999999887765 57889999999999994433 24554 8889999999999987776


Q ss_pred             ccCCCcCcccccccceeecCCccccccccccCCc----EEEeeccCCccchhcccccccccCccccccCcccEEEecCCC
Q 040192          188 SDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLN----RLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCK  263 (386)
Q Consensus       188 ~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  263 (386)
                      ..                     ...+..+++|+    .|++++|.... .+...+          ...+|+.|++++| 
T Consensus       164 ~~---------------------~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~----------~~~~L~~L~L~~n-  210 (276)
T 2z62_A          164 IY---------------------CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAF----------KEIRLKELALDTN-  210 (276)
T ss_dssp             EC---------------------GGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSS----------CSCCEEEEECCSS-
T ss_pred             CC---------------------HHHhhhhhhccccceeeecCCCcccc-cCcccc----------CCCcccEEECCCC-
Confidence            41                     12233334444    78888876543 333333          3457888888888 


Q ss_pred             CCCcccc--ccCCCCCcEEeecCCC
Q 040192          264 ELKDLTF--LIFAPNLKSIEVDSCY  286 (386)
Q Consensus       264 ~l~~~~~--l~~l~~L~~L~l~~c~  286 (386)
                      .++.++.  +..+++|+.|++++++
T Consensus       211 ~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          211 QLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             ceeecCHhHhcccccccEEEccCCc
Confidence            4665543  4678888888888754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=6.2e-19  Score=159.38  Aligned_cols=211  Identities=17%  Similarity=0.240  Sum_probs=169.9

Q ss_pred             EEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCC
Q 040192           58 RLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGI  137 (386)
Q Consensus        58 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i  137 (386)
                      .+.+..+.+.+......+++|+.|++++| .+..++.  +..+++|++|++++| .+..++. +..+++|++|++++|.+
T Consensus        23 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l   97 (308)
T 1h6u_A           23 KIAAGKSNVTDTVTQADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPL   97 (308)
T ss_dssp             HHHTTCSSTTSEECHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred             HHHhCCCCcCceecHHHcCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcC
Confidence            33444555555444467899999999999 7777764  789999999999999 8888876 88999999999999999


Q ss_pred             CcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccc
Q 040192          138 AELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADL  217 (386)
Q Consensus       138 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~  217 (386)
                      +.++ .+..+++|+.|++++| .+..++.  +..+++|++|++++|.+...                       ..+..+
T Consensus        98 ~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~-----------------------~~l~~l  150 (308)
T 1h6u_A           98 KNVS-AIAGLQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQITNI-----------------------SPLAGL  150 (308)
T ss_dssp             SCCG-GGTTCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------------GGGGGC
T ss_pred             CCch-hhcCCCCCCEEECCCC-CCCCchh--hcCCCCCCEEECCCCccCcC-----------------------ccccCC
Confidence            9876 6888999999999999 5666765  89999999999999987765                       125667


Q ss_pred             cCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhccCcc
Q 040192          218 KRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPE  297 (386)
Q Consensus       218 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~  297 (386)
                      ++|+.|++++|+... ...  +.         .+++|+.|++++| .++.++.+..+++|++|++++|. ++++.     
T Consensus       151 ~~L~~L~l~~n~l~~-~~~--l~---------~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~-l~~~~-----  211 (308)
T 1h6u_A          151 TNLQYLSIGNAQVSD-LTP--LA---------NLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ-ISDVS-----  211 (308)
T ss_dssp             TTCCEEECCSSCCCC-CGG--GT---------TCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC-CCBCG-----
T ss_pred             CCccEEEccCCcCCC-Chh--hc---------CCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCCc-cCccc-----
Confidence            899999999996654 332  33         7899999999999 67888778899999999999965 66553     


Q ss_pred             cccCCCCcccccceeeecccccccccc
Q 040192          298 VMMGNLNPFAQFHFLCFSYLPNLKSIY  324 (386)
Q Consensus       298 ~~~~~~~~~~~L~~L~l~~~~~l~~~~  324 (386)
                          .+..+++|+.|+++++ .+...+
T Consensus       212 ----~l~~l~~L~~L~l~~N-~i~~~~  233 (308)
T 1h6u_A          212 ----PLANTSNLFIVTLTNQ-TITNQP  233 (308)
T ss_dssp             ----GGTTCTTCCEEEEEEE-EEECCC
T ss_pred             ----cccCCCCCCEEEccCC-eeecCC
Confidence                3467899999999998 455443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=4e-20  Score=177.64  Aligned_cols=233  Identities=16%  Similarity=0.117  Sum_probs=143.1

Q ss_pred             ccEEEEcCCCCCCCC--cccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+.+.+..+..++  .+..++ +|++|++++|.+.+.++...+++|++|++++| .+..++.     .++|++|++++
T Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~l~~-----~~~L~~L~L~~  108 (487)
T 3oja_A           36 VKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNN-YVQELLV-----GPSIETLHAAN  108 (487)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEECTTCTTCCEEECCSS-EEEEEEE-----CTTCCEEECCS
T ss_pred             ccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcccccCCCCCEEEecCC-cCCCCCC-----CCCcCEEECcC
Confidence            566777777776664  366666 77777777777776555667777777777777 5554432     36777777777


Q ss_pred             CccccccchhhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcccc
Q 040192          111 AIRLYSFPLGISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSD  189 (386)
Q Consensus       111 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  189 (386)
                      | .+..++.  ..+++|+.|++++|.++.++ ..++.+++|+.|++++|......|..+...+++|+.|++++|.+.+. 
T Consensus       109 N-~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-  184 (487)
T 3oja_A          109 N-NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-  184 (487)
T ss_dssp             S-CCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred             C-cCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence            7 6665543  24567777777777777553 35666777777777777444434444223677777777777766554 


Q ss_pred             CCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc
Q 040192          190 GMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT  269 (386)
Q Consensus       190 ~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  269 (386)
                                            .....+++|+.|++++|.... ++.. +.         .+++|+.|++++| .++.++
T Consensus       185 ----------------------~~~~~l~~L~~L~Ls~N~l~~-~~~~-~~---------~l~~L~~L~Ls~N-~l~~lp  230 (487)
T 3oja_A          185 ----------------------KGQVVFAKLKTLDLSSNKLAF-MGPE-FQ---------SAAGVTWISLRNN-KLVLIE  230 (487)
T ss_dssp             ----------------------ECCCCCTTCCEEECCSSCCCE-ECGG-GG---------GGTTCSEEECTTS-CCCEEC
T ss_pred             ----------------------cccccCCCCCEEECCCCCCCC-CCHh-Hc---------CCCCccEEEecCC-cCcccc
Confidence                                  112235677777777775543 3222 22         5677777777777 345443


Q ss_pred             -cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccc
Q 040192          270 -FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYL  317 (386)
Q Consensus       270 -~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  317 (386)
                       .+..+++|+.|++++|+.......       ..+..+++|+.+++..+
T Consensus       231 ~~l~~l~~L~~L~l~~N~l~c~~~~-------~~~~~l~~L~~l~~~~~  272 (487)
T 3oja_A          231 KALRFSQNLEHFDLRGNGFHCGTLR-------DFFSKNQRVQTVAKQTV  272 (487)
T ss_dssp             TTCCCCTTCCEEECTTCCBCHHHHH-------HHHTTCHHHHHHHHHHH
T ss_pred             hhhccCCCCCEEEcCCCCCcCcchH-------HHHHhCCCCcEEecccc
Confidence             355667777777777553322222       14455666777666543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=8e-19  Score=161.62  Aligned_cols=239  Identities=20%  Similarity=0.275  Sum_probs=165.8

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceec-cc
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN-LS  109 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~-l~  109 (386)
                      ...+.|.+.+++++|.  .+++++++|++++|.++.++..  ..+++|++|++++|...+.++..+|.++++++.+. +.
T Consensus        11 ~~~v~C~~~~Lt~iP~--~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           11 NRVFLCQESKVTEIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TTEEEEESTTCCSCCT--TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CCEEEecCCCCCccCc--CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            3568899999999986  2344899999999999998864  88999999999999445677877788999887654 44


Q ss_pred             CCcccccc-chhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCC-CCcEEEEeccCCc
Q 040192          110 GAIRLYSF-PLGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFS-SLHVLRIFGSGYS  186 (386)
Q Consensus       110 ~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~  186 (386)
                      .+ .+..+ |..+..+++|++|++++|.+..+|. .+....++..+++.++..+..++...+..+. .++.|++++|.+.
T Consensus        89 ~N-~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 AN-NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ET-TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CC-cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            55 78877 5678999999999999999987764 3345667888888877677888876566664 6889999999887


Q ss_pred             cccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCC
Q 040192          187 YSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELK  266 (386)
Q Consensus       187 ~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  266 (386)
                      .....                      .....+|+.+.+.+++.+..++...+.         .+++|+.|++++| .++
T Consensus       168 ~i~~~----------------------~f~~~~L~~l~l~~~n~l~~i~~~~f~---------~l~~L~~LdLs~N-~l~  215 (350)
T 4ay9_X          168 EIHNS----------------------AFNGTQLDELNLSDNNNLEELPNDVFH---------GASGPVILDISRT-RIH  215 (350)
T ss_dssp             EECTT----------------------SSTTEEEEEEECTTCTTCCCCCTTTTT---------TEECCSEEECTTS-CCC
T ss_pred             CCChh----------------------hccccchhHHhhccCCcccCCCHHHhc---------cCcccchhhcCCC-CcC
Confidence            65211                      112235566666554444444444443         4566666666666 455


Q ss_pred             ccccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecc
Q 040192          267 DLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSY  316 (386)
Q Consensus       267 ~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  316 (386)
                      .++. ..+.+|++|.+.++..++.+         ..+..+++|+.+++.+
T Consensus       216 ~lp~-~~~~~L~~L~~l~~~~l~~l---------P~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          216 SLPS-YGLENLKKLRARSTYNLKKL---------PTLEKLVALMEASLTY  255 (350)
T ss_dssp             CCCS-SSCTTCCEEECTTCTTCCCC---------CCTTTCCSCCEEECSC
T ss_pred             ccCh-hhhccchHhhhccCCCcCcC---------CCchhCcChhhCcCCC
Confidence            5443 23555666666655555554         2344556666666543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.80  E-value=3.2e-20  Score=168.20  Aligned_cols=238  Identities=18%  Similarity=0.171  Sum_probs=163.7

Q ss_pred             CccEEEecCCcccccCCC-CCCCCCcEEecccCcCCC--cCChhhhc-------CCCcCceecccCCcccc-ccchhh--
Q 040192           55 NVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLR--RIDSGFFQ-------SMPRLNVLNLSGAIRLY-SFPLGI--  121 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~-------~l~~L~~L~l~~~~~~~-~~~~~~--  121 (386)
                      +++.+++++|.+ .+|.. ...  |+.|++++| .+.  .++.. +.       .+++|++|++++| .+. .+|..+  
T Consensus        44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n-~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~  117 (312)
T 1wwl_A           44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRL-TVRAARIPSR-ILFGALRVLGISGLQELTLENL-EVTGTAPPPLLE  117 (312)
T ss_dssp             ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEE-EEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSS
T ss_pred             CceeEeeccccc-ccHHHHHHH--Hhhcccccc-cccCCCcCHH-HHHHHHHhcCcCCccEEEccCC-cccchhHHHHHH
Confidence            677788888877 55543 222  777888877 443  34433 22       6888888888888 666 456655  


Q ss_pred             cCCCccCEEEcCCCCCCcccHhhhcc-----CCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcc
Q 040192          122 SKLISLQHLDLSNTGIAELPKELNAL-----VNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGE  196 (386)
Q Consensus       122 ~~l~~L~~L~l~~~~i~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~  196 (386)
                      +.+++|++|++++|.++.+|..++.+     ++|++|++++| .+..++...++.+++|++|++++|.+.+...      
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------  190 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERG------  190 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHH------
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchH------
Confidence            78888888888888888777666666     88888888888 4455554448888888888888887554200      


Q ss_pred             cccccceeecCCccccc--cccccCCcEEEeeccCCcc--chhcccccccccCccccccCcccEEEecCCCCCCcc---c
Q 040192          197 FEQLCGFRRSKSLDVSA--LADLKRLNRLKIAECYGLA--ELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL---T  269 (386)
Q Consensus       197 L~~L~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~  269 (386)
                                   .+..  +..+++|++|++++|+...  ......+.         .+++|+.|++++|. ++..   +
T Consensus       191 -------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~---------~l~~L~~L~Ls~N~-l~~~~~~~  247 (312)
T 1wwl_A          191 -------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAA---------ARVQLQGLDLSHNS-LRDAAGAP  247 (312)
T ss_dssp             -------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH---------TTCCCSEEECTTSC-CCSSCCCS
T ss_pred             -------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh---------cCCCCCEEECCCCc-CCcccchh
Confidence                         0111  2557888888888886552  12222222         56889999999884 5542   3


Q ss_pred             cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCc
Q 040192          270 FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHC  341 (386)
Q Consensus       270 ~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c  341 (386)
                      ....+++|+.|++++|. ++.++.        .+.  ++|++|+++++ .+..++. ...+++|+.|++++.
T Consensus       248 ~~~~l~~L~~L~Ls~N~-l~~ip~--------~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          248 SCDWPSQLNSLNLSFTG-LKQVPK--------GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             CCCCCTTCCEEECTTSC-CSSCCS--------SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred             hhhhcCCCCEEECCCCc-cChhhh--------hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence            34557889999998855 665543        222  78999999988 6777765 667888888888874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.79  E-value=4.3e-19  Score=157.53  Aligned_cols=140  Identities=24%  Similarity=0.394  Sum_probs=82.5

Q ss_pred             CCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccch-h
Q 040192           42 GLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPL-G  120 (386)
Q Consensus        42 ~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~  120 (386)
                      .+.+......++ +++.|.+.++.+..++....+++|+.|++++| .+..++  .+..+++|++|++++| .+..++. .
T Consensus        30 ~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~  104 (272)
T 3rfs_A           30 SVTDAVTQNELN-SIDQIIANNSDIKSVQGIQYLPNVRYLALGGN-KLHDIS--ALKELTNLTYLILTGN-QLQSLPNGV  104 (272)
T ss_dssp             CTTSEECHHHHT-TCCEEECTTSCCCCCTTGGGCTTCCEEECTTS-CCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred             cccccccccccc-ceeeeeeCCCCcccccccccCCCCcEEECCCC-CCCCch--hhcCCCCCCEEECCCC-ccCccChhH
Confidence            344444455556 67777777776666665566666777777666 454443  2556666666666666 5555432 3


Q ss_pred             hcCCCccCEEEcCCCCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192          121 ISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       121 ~~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      +..+++|++|++++|.++.++.. ++.+++|+.|++++| .+..++...+..+++|+.|++++|.+..
T Consensus       105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~  171 (272)
T 3rfs_A          105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS  171 (272)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCc
Confidence            45666666666666666655433 455666666666666 3444444445566666666666655443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.79  E-value=1.1e-18  Score=154.95  Aligned_cols=223  Identities=16%  Similarity=0.201  Sum_probs=167.7

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN  134 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  134 (386)
                      ++..+.+..+.+.+......+++|+.|++.++ .+..++.  +..+++|++|++++| .+..++ .+..+++|++|++++
T Consensus        20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~   94 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNS-DIKSVQG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTG   94 (272)
T ss_dssp             HHHHHHHTCSCTTSEECHHHHTTCCEEECTTS-CCCCCTT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTT
T ss_pred             HHHHHHhcCcccccccccccccceeeeeeCCC-Ccccccc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCC
Confidence            45556666776666555578899999999998 6776654  778999999999998 777764 678899999999999


Q ss_pred             CCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccc
Q 040192          135 TGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSA  213 (386)
Q Consensus       135 ~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~  213 (386)
                      |.++.++.. +..+++|++|++++| .+..++...+..+++|+.|++++|.+...                     ....
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------------~~~~  152 (272)
T 3rfs_A           95 NQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSL---------------------PKGV  152 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------------CTTT
T ss_pred             CccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCcc---------------------CHHH
Confidence            999877654 678899999999999 55666666578899999999999877654                     1223


Q ss_pred             cccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc--ccCCCCCcEEeecCCCccchh
Q 040192          214 LADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF--LIFAPNLKSIEVDSCYALEEI  291 (386)
Q Consensus       214 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--l~~l~~L~~L~l~~c~~~~~~  291 (386)
                      +..+++|+.|++++|+... .+...+.         .+++|+.|++++| .++.++.  +..+++|+.|++++|+     
T Consensus       153 ~~~l~~L~~L~l~~n~l~~-~~~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-----  216 (272)
T 3rfs_A          153 FDKLTNLTELDLSYNQLQS-LPEGVFD---------KLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP-----  216 (272)
T ss_dssp             TTTCTTCCEEECCSSCCCC-CCTTTTT---------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-----
T ss_pred             hccCccCCEEECCCCCcCc-cCHHHhc---------CCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC-----
Confidence            4567889999999986553 4444443         6889999999998 4665543  6788999999999864     


Q ss_pred             hccCcccccCCCCcccccceeeeccccccccccCCCcCC
Q 040192          292 VSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPF  330 (386)
Q Consensus       292 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  330 (386)
                                ..+.+|+|+.|++..+..-..++...+.+
T Consensus       217 ----------~~~~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          217 ----------WDCTCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             ----------BCCCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             ----------ccccCcHHHHHHHHHHhCCCcccCccccc
Confidence                      22346788888888775445566554443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=3.4e-18  Score=153.06  Aligned_cols=198  Identities=20%  Similarity=0.174  Sum_probs=114.0

Q ss_pred             ccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEE
Q 040192           51 KWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHL  130 (386)
Q Consensus        51 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  130 (386)
                      .++ ++++++++++.+..+|... .++++.|++++| .+..+++..+..+++|++|++++| .+..++.. +.+++|++|
T Consensus         8 ~l~-~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G            8 KVA-SHLEVNCDKRNLTALPPDL-PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL   82 (290)
T ss_dssp             CST-TCCEEECTTSCCSSCCSCC-CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred             ccC-CccEEECCCCCCCcCCCCC-CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence            344 5666666666666655431 256666666666 555554444666666666666666 55555432 556666666


Q ss_pred             EcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcc
Q 040192          131 DLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLD  210 (386)
Q Consensus       131 ~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~  210 (386)
                      ++++|.++.+|..+..+++|+.|++++| .+..++...+..+++|+.|++++|.+...                     .
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~---------------------~  140 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTL---------------------P  140 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCC---------------------C
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCcc---------------------C
Confidence            6666666666666666666666666666 44455544466666666666666655543                     1


Q ss_pred             ccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc-cccCCCCCcEEeecCCC
Q 040192          211 VSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT-FLIFAPNLKSIEVDSCY  286 (386)
Q Consensus       211 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~c~  286 (386)
                      ...+..+++|+.|++++|+... ++...+.         .+++|+.|++++| .++.++ .+..+++|+.++|.+++
T Consensus       141 ~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~---------~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          141 PGLLTPTPKLEKLSLANNNLTE-LPAGLLN---------GLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSC-CCTTTTT---------TCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             hhhcccccCCCEEECCCCcCCc-cCHHHhc---------CcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence            1223445666666666664432 3333332         4666666666666 344443 24445566666666544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=7.2e-18  Score=149.47  Aligned_cols=196  Identities=19%  Similarity=0.257  Sum_probs=140.3

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccch-hhcCCCccCEEEcC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPL-GISKLISLQHLDLS  133 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~  133 (386)
                      +.++++++++.+..+|... .++++.|++++| .+..++...+..+++|++|++++| .+..++. .+..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCccCCCC-CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC
Confidence            5678888888888876542 267888888888 777777666788888888888888 7777754 45778888888888


Q ss_pred             CCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192          134 NTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS  212 (386)
Q Consensus       134 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~  212 (386)
                      +|.++.++. .+..+++|+.|++++| .+..++...+..+++|+.|++++|.+....                     ..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------------------~~  151 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLP---------------------KG  151 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------------TT
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccC---------------------Hh
Confidence            888887764 4567888888888888 455666555778888888888888666541                     12


Q ss_pred             ccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc--ccCCCCCcEEeecCCC
Q 040192          213 ALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF--LIFAPNLKSIEVDSCY  286 (386)
Q Consensus       213 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--l~~l~~L~~L~l~~c~  286 (386)
                      .+..+++|+.|++++|+... ++...+.         .+++|+.|++++| .++.++.  +..+++|+.|++++++
T Consensus       152 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          152 VFDKLTSLKELRLYNNQLKR-VPEGAFD---------KLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSC-CCTTTTT---------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             HccCCcccceeEecCCcCcE-eChhHhc---------cCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence            24556778888888775543 3333333         5677888888877 4555432  5667777778777754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.79  E-value=4.1e-18  Score=151.56  Aligned_cols=218  Identities=20%  Similarity=0.220  Sum_probs=155.0

Q ss_pred             EEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc-hhhcCCCccCEEEcCCCC
Q 040192           58 RLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLSNTG  136 (386)
Q Consensus        58 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~  136 (386)
                      .+...+..+..+|.. -.++|+.|++++| .+..++...+..+++|++|++++| .+..++ ..+..+++|++|++++|.
T Consensus        11 ~~~c~~~~l~~ip~~-l~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFYKIPDN-LPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCSSCCSS-SCTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCccccCCC-CCCCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc
Confidence            445555566666553 2357999999998 777777655888999999999998 777664 467889999999999999


Q ss_pred             CCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccc
Q 040192          137 IAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALA  215 (386)
Q Consensus       137 i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~  215 (386)
                      ++.++ ..+..+++|+.|++++| .+..++...+..+++|++|++++|.+....                    .+..+.
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------l~~~~~  146 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFK--------------------LPEYFS  146 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCC--------------------CCGGGG
T ss_pred             cCccChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceec--------------------Cchhhc
Confidence            88766 56788899999999988 445555534788899999999988776531                    134566


Q ss_pred             cccCCcEEEeeccCCccchhcccccccccCccccccCccc----EEEecCCCCCCccc-cccCCCCCcEEeecCCCccch
Q 040192          216 DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLK----KFQISYCKELKDLT-FLIFAPNLKSIEVDSCYALEE  290 (386)
Q Consensus       216 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~c~~~~~  290 (386)
                      .+++|++|++++|+... .....+.         .+++|+    .|++++| .++.++ ......+|+.|++++|. ++.
T Consensus       147 ~l~~L~~L~Ls~N~l~~-~~~~~~~---------~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l~~  214 (276)
T 2z62_A          147 NLTNLEHLDLSSNKIQS-IYCTDLR---------VLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKS  214 (276)
T ss_dssp             GCTTCCEEECCSSCCCE-ECGGGGH---------HHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC-CSC
T ss_pred             cCCCCCEEECCCCCCCc-CCHHHhh---------hhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCc-eee
Confidence            77888999998886554 3333332         445555    7888887 455443 23334578888888754 666


Q ss_pred             hhccCcccccCCCCcccccceeeecccc
Q 040192          291 IVSDVPEVMMGNLNPFAQFHFLCFSYLP  318 (386)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~  318 (386)
                      ++.       ..+..+++|++|++++++
T Consensus       215 ~~~-------~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          215 VPD-------GIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CCT-------TTTTTCCSCCEEECCSSC
T ss_pred             cCH-------hHhcccccccEEEccCCc
Confidence            554       255677888888888763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=1.6e-18  Score=150.82  Aligned_cols=198  Identities=16%  Similarity=0.200  Sum_probs=118.4

Q ss_pred             cCceecccCCccccccch-hhcCCCccCEEEcCCCC-CCcccH-hhhccCCCCEEEccC-CccccccchhhhcCCCCCcE
Q 040192          102 RLNVLNLSGAIRLYSFPL-GISKLISLQHLDLSNTG-IAELPK-ELNALVNLTCLNLEE-TWRLTVIPRRLISSFSSLHV  177 (386)
Q Consensus       102 ~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~-i~~l~~-~~~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~  177 (386)
                      .+++|+++++ .+..++. .+..+++|++|++++|. ++.++. .+..+++|+.|++++ | .+..++...+..+++|+.
T Consensus        32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCE
T ss_pred             cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCE
Confidence            5566666666 5555533 45566666666666664 555553 455666666666666 4 445555444666777777


Q ss_pred             EEEeccCCccccCCCcCcccccccceeecCCccccccccccCCc---EEEeeccCCccchhcccccccccCccccccCcc
Q 040192          178 LRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLN---RLKIAECYGLAELKMDYKSVVQNTGQSFVFHSL  254 (386)
Q Consensus       178 L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  254 (386)
                      |++++|.+.....                       +..+++|+   .|++++|..+..++...+.         .+++|
T Consensus       110 L~l~~n~l~~lp~-----------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~---------~l~~L  157 (239)
T 2xwt_C          110 LGIFNTGLKMFPD-----------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQ---------GLCNE  157 (239)
T ss_dssp             EEEEEECCCSCCC-----------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTT---------TTBSS
T ss_pred             EeCCCCCCccccc-----------------------cccccccccccEEECCCCcchhhcCccccc---------chhcc
Confidence            7777766555311                       22233343   7777776333334444443         56777


Q ss_pred             c-EEEecCCCCCCcccc-ccCCCCCcEEeecCCCccchhhccCcccccCCCCcc-cccceeeeccccccccccCCCcCCC
Q 040192          255 K-KFQISYCKELKDLTF-LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPF-AQFHFLCFSYLPNLKSIYRKPLPFP  331 (386)
Q Consensus       255 ~-~L~l~~~~~l~~~~~-l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~  331 (386)
                      + .|++++| .++.++. ....++|+.|++++|..++.++.       ..+..+ ++|++|+++++ .+..++..  .|+
T Consensus       158 ~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-------~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~  226 (239)
T 2xwt_C          158 TLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-------DAFGGVYSGPSLLDVSQT-SVTALPSK--GLE  226 (239)
T ss_dssp             EEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECT-------TTTTTCSBCCSEEECTTC-CCCCCCCT--TCT
T ss_pred             eeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCH-------HHhhccccCCcEEECCCC-ccccCChh--Hhc
Confidence            7 7777777 4555432 22226788888887644666654       256667 78888888887 56666543  578


Q ss_pred             CccEEeecCcccC
Q 040192          332 HLKEMKVIHCLKL  344 (386)
Q Consensus       332 ~L~~L~i~~c~~L  344 (386)
                      +|+.|.+.++.+|
T Consensus       227 ~L~~L~l~~~~~l  239 (239)
T 2xwt_C          227 HLKELIARNTWTL  239 (239)
T ss_dssp             TCSEEECTTC---
T ss_pred             cCceeeccCccCC
Confidence            8888888777643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.77  E-value=1.9e-19  Score=163.19  Aligned_cols=223  Identities=17%  Similarity=0.188  Sum_probs=170.3

Q ss_pred             CccEEEecCCcccc--cCCC-C-------CCCCCcEEecccCcCCC-cCChhhh-cCCCcCceecccCCccccccchhhc
Q 040192           55 NVRRLSLMENQIEN--LSEV-P-------TCPYLRTLFLNNNAPLR-RIDSGFF-QSMPRLNVLNLSGAIRLYSFPLGIS  122 (386)
Q Consensus        55 ~L~~L~l~~~~~~~--~~~~-~-------~~~~L~~L~l~~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~  122 (386)
                      .++.|++++|.+..  ++.. .       .+++|++|++++| .+. .+|..++ ..+++|++|++++| .+...|..++
T Consensus        64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~  141 (312)
T 1wwl_A           64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLA  141 (312)
T ss_dssp             HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHH
T ss_pred             HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHH
Confidence            48889999998865  4443 2       6999999999999 555 5666533 89999999999999 8887777777


Q ss_pred             CC-----CccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccc--cchh-hhcCCCCCcEEEEeccCCccccCCCc
Q 040192          123 KL-----ISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTV--IPRR-LISSFSSLHVLRIFGSGYSYSDGMIG  193 (386)
Q Consensus       123 ~l-----~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~--~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~  193 (386)
                      .+     ++|++|++++|.++.++ ..++.+++|++|++++|+..+.  ++.. .+..+++|++|++++|.+......  
T Consensus       142 ~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--  219 (312)
T 1wwl_A          142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV--  219 (312)
T ss_dssp             HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHH--
T ss_pred             HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHH--
Confidence            76     99999999999999777 6788999999999999965544  2333 138899999999999987743100  


Q ss_pred             CcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccC
Q 040192          194 NGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIF  273 (386)
Q Consensus       194 l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~  273 (386)
                                      ....+..+++|+.|++++|+.....+...+.         .+++|+.|++++| .++.++..-.
T Consensus       220 ----------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------~l~~L~~L~Ls~N-~l~~ip~~~~  273 (312)
T 1wwl_A          220 ----------------CSALAAARVQLQGLDLSHNSLRDAAGAPSCD---------WPSQLNSLNLSFT-GLKQVPKGLP  273 (312)
T ss_dssp             ----------------HHHHHHTTCCCSEEECTTSCCCSSCCCSCCC---------CCTTCCEEECTTS-CCSSCCSSCC
T ss_pred             ----------------HHHHHhcCCCCCEEECCCCcCCcccchhhhh---------hcCCCCEEECCCC-ccChhhhhcc
Confidence                            0122345689999999999766533223332         5799999999999 5666654222


Q ss_pred             CCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccc
Q 040192          274 APNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLP  318 (386)
Q Consensus       274 l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  318 (386)
                       ++|+.|+++++. ++.+ .        .+..+++|++|++++++
T Consensus       274 -~~L~~L~Ls~N~-l~~~-p--------~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          274 -AKLSVLDLSYNR-LDRN-P--------SPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             -SEEEEEECCSSC-CCSC-C--------CTTTSCEEEEEECTTCT
T ss_pred             -CCceEEECCCCC-CCCC-h--------hHhhCCCCCEEeccCCC
Confidence             899999999954 7766 2        46788999999999983

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=5.6e-19  Score=161.67  Aligned_cols=221  Identities=16%  Similarity=0.137  Sum_probs=119.2

Q ss_pred             ccEEEecCCcccccCCCCCC--CCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccc--cchhhcCCCccCEEE
Q 040192           56 VRRLSLMENQIENLSEVPTC--PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYS--FPLGISKLISLQHLD  131 (386)
Q Consensus        56 L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~  131 (386)
                      +++++++++.+.. .....+  ++++.|+++++ .+...++. +..+++|++|++++| .+..  ++..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCCH-HHHHHHHHTTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCCH-HHHHhhhhccceEEEcCCc-cccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEe
Confidence            5566666655442 001233  56666666666 44443333 345666666666666 4442  455556666666666


Q ss_pred             cCCCCCC-cccHhhhccCCCCEEEccCCccccc--cchhhhcCCCCCcEEEEecc-CCccccCCCcCcccccccceeecC
Q 040192          132 LSNTGIA-ELPKELNALVNLTCLNLEETWRLTV--IPRRLISSFSSLHVLRIFGS-GYSYSDGMIGNGEFEQLCGFRRSK  207 (386)
Q Consensus       132 l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~l~~L~~L~~~~~~~  207 (386)
                      +++|.++ ..+..++.+++|++|++++|..++.  ++. .+..+++|++|++++| .+.+..                  
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~------------------  185 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKH------------------  185 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHH------------------
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHH------------------
Confidence            6666665 4445556666666666666633332  333 2566666666666666 444320                  


Q ss_pred             Ccccccccccc-CCcEEEeeccC-Ccc-chhcccccccccCccccccCcccEEEecCCCCCCc--cccccCCCCCcEEee
Q 040192          208 SLDVSALADLK-RLNRLKIAECY-GLA-ELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKD--LTFLIFAPNLKSIEV  282 (386)
Q Consensus       208 ~~~~~~l~~~~-~L~~L~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~l~~l~~L~~L~l  282 (386)
                        ....+..++ +|++|++++|. ... ......+.         .+++|+.|++++|..+++  +..+..+++|++|++
T Consensus       186 --~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~---------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l  254 (336)
T 2ast_B          186 --VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR---------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL  254 (336)
T ss_dssp             --HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH---------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             --HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh---------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence              012234455 66666666663 121 11112222         566777777776653443  344566677777777


Q ss_pred             cCCCccchhhccCcccccCCCCcccccceeeeccc
Q 040192          283 DSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYL  317 (386)
Q Consensus       283 ~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  317 (386)
                      ++|..+.....       ..+..+++|++|++++|
T Consensus       255 ~~~~~~~~~~~-------~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          255 SRCYDIIPETL-------LELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCTTCCGGGG-------GGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCHHHH-------HHHhcCCCCCEEeccCc
Confidence            76653333222       13455667777777766

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=1.2e-18  Score=159.42  Aligned_cols=244  Identities=18%  Similarity=0.186  Sum_probs=179.2

Q ss_pred             ccEEEEcCCCCCCCCccccc--ccCccEEEecCCccccc-CCCCCCCCCcEEecccCcCCCcC-ChhhhcCCCcCceecc
Q 040192           33 EEHLVYAGAGLSETPDVRKW--EKNVRRLSLMENQIENL-SEVPTCPYLRTLFLNNNAPLRRI-DSGFFQSMPRLNVLNL  108 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~--~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l  108 (386)
                      -..+++.+..+.. ..+..+  + +++.++++++.+.+. +....+++|+.|++++| .+... .+..+..+++|++|++
T Consensus        49 ~~~l~l~~~~~~~-~~~~~~~~~-~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           49 WQTLDLTGKNLHP-DVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             SSEEECTTCBCCH-HHHHHHHHT-TCSEEECTTCEECSCCCSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEEC
T ss_pred             heeeccccccCCH-HHHHhhhhc-cceEEEcCCccccccchhhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeC
Confidence            4566666655541 123444  5 899999999999884 44478999999999999 55532 3344789999999999


Q ss_pred             cCCcccc-ccchhhcCCCccCEEEcCCC-CCC--cccHhhhccCCCCEEEccCCccccc--cchhhhcCCC-CCcEEEEe
Q 040192          109 SGAIRLY-SFPLGISKLISLQHLDLSNT-GIA--ELPKELNALVNLTCLNLEETWRLTV--IPRRLISSFS-SLHVLRIF  181 (386)
Q Consensus       109 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~-~i~--~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~-~L~~L~l~  181 (386)
                      ++| .+. ..+..++.+++|++|++++| .++  .++..+..+++|++|++++|..+..  ++. .+..++ +|++|+++
T Consensus       126 ~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          126 EGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLS  203 (336)
T ss_dssp             TTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECC
T ss_pred             cCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeC
Confidence            999 666 45778889999999999999 677  4777788999999999999944443  444 378899 99999999


Q ss_pred             ccC--CccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEe
Q 040192          182 GSG--YSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQI  259 (386)
Q Consensus       182 ~~~--~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  259 (386)
                      +|.  ++..                    ..+..+..+++|++|++++|....+..+..+.         .+++|++|++
T Consensus       204 ~~~~~~~~~--------------------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---------~l~~L~~L~l  254 (336)
T 2ast_B          204 GYRKNLQKS--------------------DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---------QLNYLQHLSL  254 (336)
T ss_dssp             SCGGGSCHH--------------------HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG---------GCTTCCEEEC
T ss_pred             CCcccCCHH--------------------HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh---------CCCCCCEeeC
Confidence            984  3322                    11234566899999999999854433444444         7899999999


Q ss_pred             cCCCCCCcc--ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcc-cccceeeeccccccccc
Q 040192          260 SYCKELKDL--TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPF-AQFHFLCFSYLPNLKSI  323 (386)
Q Consensus       260 ~~~~~l~~~--~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~  323 (386)
                      ++|..+.+.  ..++.+++|+.|++++|  +++.          .+..+ .+|+.|+++++ .+...
T Consensus       255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~----------~~~~l~~~l~~L~l~~n-~l~~~  308 (336)
T 2ast_B          255 SRCYDIIPETLLELGEIPTLKTLQVFGI--VPDG----------TLQLLKEALPHLQINCS-HFTTI  308 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTT----------CHHHHHHHSTTSEESCC-CSCCT
T ss_pred             CCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHH----------HHHHHHhhCcceEEecc-cCccc
Confidence            999755543  35778999999999998  3322          22333 34777778766 55543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.76  E-value=2.9e-17  Score=143.90  Aligned_cols=187  Identities=21%  Similarity=0.297  Sum_probs=153.1

Q ss_pred             hhHHHhhhccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhh
Q 040192           19 AMLPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGF   96 (386)
Q Consensus        19 d~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~   96 (386)
                      +...|.++.|.. ....+++.+.++..+|..  ++++++.|++++|.+..++..  ..+++|++|++++| .+..+++..
T Consensus         3 ~Cp~~~gC~C~~-~~~~l~~~~~~l~~~p~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~   78 (251)
T 3m19_A            3 TCETVTGCTCNE-GKKEVDCQGKSLDSVPSG--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGV   78 (251)
T ss_dssp             -CHHHHSSEEEG-GGTEEECTTCCCSSCCSC--CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred             cCCCCCceEcCC-CCeEEecCCCCccccCCC--CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhH
Confidence            344566677753 466899999999999863  223899999999999996653  88999999999999 788887777


Q ss_pred             hcCCCcCceecccCCccccccc-hhhcCCCccCEEEcCCCCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCC
Q 040192           97 FQSMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSS  174 (386)
Q Consensus        97 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  174 (386)
                      +..+++|++|++++| .+..++ ..+..+++|++|++++|.++.++.. +..+++|+.|++++| .+..++...+..+++
T Consensus        79 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           79 FDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             hccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcC
Confidence            899999999999999 888775 5678999999999999999988764 578999999999999 667777766899999


Q ss_pred             CcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCcc
Q 040192          175 LHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLA  232 (386)
Q Consensus       175 L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  232 (386)
                      |++|++++|.+...                     ....+..+++|+.|++++|....
T Consensus       157 L~~L~L~~N~l~~~---------------------~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          157 LQTLSLSTNQLQSV---------------------PHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCEEECCSSCCSCC---------------------CTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CCEEECCCCcCCcc---------------------CHHHHhCCCCCCEEEeeCCceeC
Confidence            99999999988765                     12345567889999999886543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.75  E-value=3e-17  Score=146.92  Aligned_cols=194  Identities=23%  Similarity=0.235  Sum_probs=160.8

Q ss_pred             cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192           32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS  109 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  109 (386)
                      ....+.+.+.++..+|...  +++++.|++++|.+..++.  ...+++|+.|++++| .+..++.  .+.+++|++|+++
T Consensus        11 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls   85 (290)
T 1p9a_G           11 SHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLS   85 (290)
T ss_dssp             TCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--CSCCTTCCEEECC
T ss_pred             CccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC--CCCCCcCCEEECC
Confidence            3677889999999987522  2389999999999998643  388999999999999 7777765  3789999999999


Q ss_pred             CCccccccchhhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192          110 GAIRLYSFPLGISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      +| .+..+|..+..+++|++|++++|.++.+| ..+..+++|+.|++++| .+..++..++..+++|+.|++++|.+...
T Consensus        86 ~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           86 HN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             SS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCcc
Confidence            99 89999988899999999999999999887 56889999999999999 56777877789999999999999988765


Q ss_pred             cCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCC
Q 040192          189 DGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKE  264 (386)
Q Consensus       189 ~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  264 (386)
                      .                     ...+..+++|+.|++++|+... ++...+          ..++|+.|.+++|+-
T Consensus       164 ~---------------------~~~~~~l~~L~~L~L~~N~l~~-ip~~~~----------~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          164 P---------------------AGLLNGLENLDTLLLQENSLYT-IPKGFF----------GSHLLPFAFLHGNPW  207 (290)
T ss_dssp             C---------------------TTTTTTCTTCCEEECCSSCCCC-CCTTTT----------TTCCCSEEECCSCCB
T ss_pred             C---------------------HHHhcCcCCCCEEECCCCcCCc-cChhhc----------ccccCCeEEeCCCCc
Confidence            1                     2234567899999999997653 443333          567999999999863

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=6.2e-17  Score=144.98  Aligned_cols=169  Identities=21%  Similarity=0.273  Sum_probs=83.0

Q ss_pred             CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCE
Q 040192           73 PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTC  152 (386)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~  152 (386)
                      ..+++|+.|++++| .+..++.  +..+++|++|++++| .+..++. +..+++|++|++++|.++.++. +..+++|+.
T Consensus        43 ~~l~~L~~L~l~~~-~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred             hhcCcccEEEccCC-CcccChh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence            33444444444444 3333332  344445555555444 4444433 4445555555555555544432 444555555


Q ss_pred             EEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCcc
Q 040192          153 LNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLA  232 (386)
Q Consensus       153 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  232 (386)
                      |++++| .+..++.  +..+++|+.|++++|.+...                       ..+..+++|+.|++++|+...
T Consensus       117 L~L~~n-~i~~~~~--l~~l~~L~~L~l~~n~l~~~-----------------------~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          117 LSLEHN-GISDING--LVHLPQLESLYLGNNKITDI-----------------------TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             EECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCC-----------------------GGGGGCTTCSEEECCSSCCCC
T ss_pred             EECCCC-cCCCChh--hcCCCCCCEEEccCCcCCcc-----------------------hhhccCCCCCEEEccCCcccc
Confidence            555555 2333332  45555555555555544332                       123344555555555554332


Q ss_pred             chhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCC
Q 040192          233 ELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCY  286 (386)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~  286 (386)
                       ...  +.         .+++|+.|++++| .+++++.+..+++|+.|++++++
T Consensus       171 -~~~--l~---------~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          171 -IVP--LA---------GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             -CGG--GT---------TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred             -chh--hc---------CCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence             211  22         5566666666666 45555556666666666666643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.73  E-value=9.4e-17  Score=147.76  Aligned_cols=236  Identities=15%  Similarity=0.072  Sum_probs=134.7

Q ss_pred             cEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccc-cccc-hhhcCCCccCE-EEcC
Q 040192           57 RRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRL-YSFP-LGISKLISLQH-LDLS  133 (386)
Q Consensus        57 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~-~~~~~l~~L~~-L~l~  133 (386)
                      ++++.++++++.+|... .++++.|++++| .++.++...|.++++|++|++++| .+ +.++ ..|.++++++. +.+.
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCc-CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhccc
Confidence            34555666666655431 346667777766 666666655666777777777666 43 3343 34556665554 3444


Q ss_pred             CCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEecc-CCccccCCCcCcccccccceeecCCccc
Q 040192          134 NTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGS-GYSYSDGMIGNGEFEQLCGFRRSKSLDV  211 (386)
Q Consensus       134 ~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~l~~L~~L~~~~~~~~~~~  211 (386)
                      .|.++.++ ..+..+++|+.|++++| .+..++...+....++..|++.++ .+...                     ..
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l---------------------~~  146 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTI---------------------ER  146 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEE---------------------CT
T ss_pred             CCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccc---------------------cc
Confidence            45666553 34556666666666666 334444432344445555555442 22211                     01


Q ss_pred             cccccc-cCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc--ccCCCCCcEEeecCCCcc
Q 040192          212 SALADL-KRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF--LIFAPNLKSIEVDSCYAL  288 (386)
Q Consensus       212 ~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--l~~l~~L~~L~l~~c~~~  288 (386)
                      ..+..+ ..++.|++++|+... ++...+          ...+|++|.+.++..++.++.  +..+++|+.|+++++ .+
T Consensus       147 ~~f~~~~~~l~~L~L~~N~i~~-i~~~~f----------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l  214 (350)
T 4ay9_X          147 NSFVGLSFESVILWLNKNGIQE-IHNSAF----------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RI  214 (350)
T ss_dssp             TSSTTSBSSCEEEECCSSCCCE-ECTTSS----------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CC
T ss_pred             cchhhcchhhhhhccccccccC-CChhhc----------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-Cc
Confidence            112222 357777777775543 333333          446777777776656776653  466777888888774 46


Q ss_pred             chhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecC
Q 040192          289 EEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIH  340 (386)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~  340 (386)
                      +.++.          ..+.+|+.|.+.++..++++|. ...+++|+.+++.+
T Consensus       215 ~~lp~----------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          215 HSLPS----------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             CCCCS----------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             CccCh----------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence            66643          3456666666666666777763 55677777777753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.72  E-value=7.7e-19  Score=167.82  Aligned_cols=294  Identities=20%  Similarity=0.192  Sum_probs=164.6

Q ss_pred             cccEEEEcCCCCCCC-----Cc-ccccccCccEEEecCCcccc--cCCC-CCCC----CCcEEecccCcCCCcCC----h
Q 040192           32 KEEHLVYAGAGLSET-----PD-VRKWEKNVRRLSLMENQIEN--LSEV-PTCP----YLRTLFLNNNAPLRRID----S   94 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~-----p~-~~~~~~~L~~L~l~~~~~~~--~~~~-~~~~----~L~~L~l~~~~~~~~~~----~   94 (386)
                      ....+.+.+..+.+.     +. +..++ +|++|++++|.+.+  +... ..++    +|++|++++| .+....    +
T Consensus        29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~  106 (461)
T 1z7x_W           29 QCQVVRLDDCGLTEARCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLS  106 (461)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHH
T ss_pred             CccEEEccCCCCCHHHHHHHHHHHHhCC-CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHHHH
Confidence            366777777776532     22 44456 78888888887765  2122 2333    6888888887 555321    3


Q ss_pred             hhhcCCCcCceecccCCcccccc-chhh-----cCCCccCEEEcCCCCCCc-----ccHhhhccCCCCEEEccCCccccc
Q 040192           95 GFFQSMPRLNVLNLSGAIRLYSF-PLGI-----SKLISLQHLDLSNTGIAE-----LPKELNALVNLTCLNLEETWRLTV  163 (386)
Q Consensus        95 ~~~~~l~~L~~L~l~~~~~~~~~-~~~~-----~~l~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~  163 (386)
                      ..+..+++|++|++++| .+... +..+     ...++|++|++++|.++.     ++..+..+++|++|++++|. +..
T Consensus       107 ~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~  184 (461)
T 1z7x_W          107 STLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INE  184 (461)
T ss_dssp             HHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHH
T ss_pred             HHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cch
Confidence            33677888888888877 55532 2222     224568888888887763     34556667888888888874 333


Q ss_pred             cchhhhc-----CCCCCcEEEEeccCCccc------cCCCcCccccccc-ceeecCCccc----c-ccccccCCcEEEee
Q 040192          164 IPRRLIS-----SFSSLHVLRIFGSGYSYS------DGMIGNGEFEQLC-GFRRSKSLDV----S-ALADLKRLNRLKIA  226 (386)
Q Consensus       164 ~~~~~l~-----~l~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~-~~~~~~~~~~----~-~l~~~~~L~~L~l~  226 (386)
                      .....+.     ..++|++|++++|.+...      ..+..++.|+.|. ..+.+.+...    . ....+++|++|+++
T Consensus       185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~  264 (461)
T 1z7x_W          185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW  264 (461)
T ss_dssp             HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence            2211121     356888888888877653      1122344455444 1222211111    1 11135677777777


Q ss_pred             ccCCccch---hcccccccccCccccccCcccEEEecCCCCCCccc--cc-----cCCCCCcEEeecCCCccchhhccCc
Q 040192          227 ECYGLAEL---KMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT--FL-----IFAPNLKSIEVDSCYALEEIVSDVP  296 (386)
Q Consensus       227 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l-----~~l~~L~~L~l~~c~~~~~~~~~~~  296 (386)
                      +|.....-   ....+.         .+++|++|++++| .+++..  .+     ...++|++|++++|. ++.......
T Consensus       265 ~n~l~~~~~~~l~~~l~---------~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l  333 (461)
T 1z7x_W          265 ECGITAKGCGDLCRVLR---------AKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHF  333 (461)
T ss_dssp             TSCCCHHHHHHHHHHHH---------HCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHH
T ss_pred             CCCCCHHHHHHHHHHHh---------hCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHH
Confidence            77544321   011121         4677888888777 344321  11     123578888888765 443211000


Q ss_pred             ccccCCCCcccccceeeeccccccccccC-CC-----cCCCCccEEeecCcccCc
Q 040192          297 EVMMGNLNPFAQFHFLCFSYLPNLKSIYR-KP-----LPFPHLKEMKVIHCLKLK  345 (386)
Q Consensus       297 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~-----~~~~~L~~L~i~~c~~L~  345 (386)
                         ...+..+++|++|+++++ .+.+... ..     ...++|+.|++++| .++
T Consensus       334 ---~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~  383 (461)
T 1z7x_W          334 ---SSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVS  383 (461)
T ss_dssp             ---HHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCC
T ss_pred             ---HHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCC
Confidence               013445688888888888 4543221 11     12678999999887 455

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.72  E-value=1.5e-17  Score=163.90  Aligned_cols=294  Identities=14%  Similarity=0.119  Sum_probs=161.9

Q ss_pred             cccEEEEcCCCCCCCC-----c-ccccccCccEEEecCCcccc-----cCCC-CCCCCCcEEecccCcCCCcCChhhhcC
Q 040192           32 KEEHLVYAGAGLSETP-----D-VRKWEKNVRRLSLMENQIEN-----LSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQS   99 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p-----~-~~~~~~~L~~L~l~~~~~~~-----~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~   99 (386)
                      ....+.+.+..+.+..     . ...++ +|++|++++|.+..     ++.. ..+++|++|++++| .+..++.. +..
T Consensus       165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~-~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~-~~~  241 (592)
T 3ogk_B          165 KIKTLLMEESSFSEKDGKWLHELAQHNT-SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGF-FKA  241 (592)
T ss_dssp             TCSEEECTTCEEECCCSHHHHHHHHHCC-CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHH-HHH
T ss_pred             CCCEEECccccccCcchhHHHHHHhcCC-CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHH-Hhh
Confidence            3667777666543321     1 23455 88888888887763     3323 57788888888887 55555433 566


Q ss_pred             CCcCceecccCCc--------------------------cccccchhhcCCCccCEEEcCCCCCC--cccHhhhccCCCC
Q 040192          100 MPRLNVLNLSGAI--------------------------RLYSFPLGISKLISLQHLDLSNTGIA--ELPKELNALVNLT  151 (386)
Q Consensus       100 l~~L~~L~l~~~~--------------------------~~~~~~~~~~~l~~L~~L~l~~~~i~--~l~~~~~~l~~L~  151 (386)
                      +++|+.|++....                          ....+|..+..+++|++|++++|.++  .++..+..+++|+
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence            7777777665321                          12223444445556666666665544  2223345566666


Q ss_pred             EEEccCCccccccchhhhcCCCCCcEEEEec-----------cCCcccc---CCCcCccccccc-ceeecCCcccccccc
Q 040192          152 CLNLEETWRLTVIPRRLISSFSSLHVLRIFG-----------SGYSYSD---GMIGNGEFEQLC-GFRRSKSLDVSALAD  216 (386)
Q Consensus       152 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~~---~~~~l~~L~~L~-~~~~~~~~~~~~l~~  216 (386)
                      .|+++.+ ........+...+++|++|+++.           +.++...   ....+++|+.|. .+..+.+.....+..
T Consensus       322 ~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          322 VLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT  400 (592)
T ss_dssp             EEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred             EEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence            6666533 22221122235566666666662           2222220   012244555554 233333333444443


Q ss_pred             -ccCCcEEEeec---cCCccchh----c-ccccccccCccccccCcccEEEecCCCC-CCc--cccc-cCCCCCcEEeec
Q 040192          217 -LKRLNRLKIAE---CYGLAELK----M-DYKSVVQNTGQSFVFHSLKKFQISYCKE-LKD--LTFL-IFAPNLKSIEVD  283 (386)
Q Consensus       217 -~~~L~~L~l~~---~~~~~~~~----~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~--~~~l-~~l~~L~~L~l~  283 (386)
                       +++|++|++++   ++.+...+    . ..+.         .+++|++|+++.|.+ +++  +..+ ..+++|+.|+|+
T Consensus       401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~---------~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~  471 (592)
T 3ogk_B          401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLI---------GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG  471 (592)
T ss_dssp             HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH---------HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred             hCCCCcEEEEeecCCCccccCchHHHHHHHHHH---------hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeecc
Confidence             66777777763   22332211    0 0111         577888888876643 333  2223 347888888888


Q ss_pred             CCCccchhhccCcccccCCCCcccccceeeecccccccc--ccCCCcCCCCccEEeecCcccCcCC
Q 040192          284 SCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKS--IYRKPLPFPHLKEMKVIHCLKLKKL  347 (386)
Q Consensus       284 ~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~i~~c~~L~~l  347 (386)
                      +|. +++....      ..+..+++|++|+|++|+ +..  ++.....+++|++|++++|+ ++.-
T Consensus       472 ~n~-l~~~~~~------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~  528 (592)
T 3ogk_B          472 YVG-ESDEGLM------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT  528 (592)
T ss_dssp             SCC-SSHHHHH------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred             CCC-CCHHHHH------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence            865 5442221      134567899999999996 443  23233468999999999986 6653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.72  E-value=5.4e-18  Score=161.96  Aligned_cols=300  Identities=18%  Similarity=0.124  Sum_probs=194.3

Q ss_pred             cccEEEEcCCCCCCC--Ccccc-cc---cCccEEEecCCcccc-----cCCC-CCCCCCcEEecccCcCCCcCCh-----
Q 040192           32 KEEHLVYAGAGLSET--PDVRK-WE---KNVRRLSLMENQIEN-----LSEV-PTCPYLRTLFLNNNAPLRRIDS-----   94 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~--p~~~~-~~---~~L~~L~l~~~~~~~-----~~~~-~~~~~L~~L~l~~~~~~~~~~~-----   94 (386)
                      ....+.+.+..+.+.  ..+.. ++   .++++|++++|.+..     ++.. ..+++|++|++++| .+.+...     
T Consensus        57 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~  135 (461)
T 1z7x_W           57 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCE  135 (461)
T ss_dssp             TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHH
T ss_pred             CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHH
Confidence            477888888776542  22222 21   159999999998884     2332 78899999999998 5553322     


Q ss_pred             hhhcCCCcCceecccCCccccc-----cchhhcCCCccCEEEcCCCCCCccc-Hhhh-----ccCCCCEEEccCCccccc
Q 040192           95 GFFQSMPRLNVLNLSGAIRLYS-----FPLGISKLISLQHLDLSNTGIAELP-KELN-----ALVNLTCLNLEETWRLTV  163 (386)
Q Consensus        95 ~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~i~~l~-~~~~-----~l~~L~~L~l~~~~~~~~  163 (386)
                      ......++|++|++++| .+..     ++..+..+++|+.|++++|.++... ..+.     ..++|+.|++++|.....
T Consensus       136 ~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  214 (461)
T 1z7x_W          136 GLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD  214 (461)
T ss_dssp             HHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred             HHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence            22233567999999998 6663     3556677899999999999876321 2222     356899999999944332


Q ss_pred             ----cchhhhcCCCCCcEEEEeccCCcccc-------CCCcCccccccc-ceeecCCc----cccccccccCCcEEEeec
Q 040192          164 ----IPRRLISSFSSLHVLRIFGSGYSYSD-------GMIGNGEFEQLC-GFRRSKSL----DVSALADLKRLNRLKIAE  227 (386)
Q Consensus       164 ----~~~~~l~~l~~L~~L~l~~~~~~~~~-------~~~~l~~L~~L~-~~~~~~~~----~~~~l~~~~~L~~L~l~~  227 (386)
                          ++.. +..+++|++|++++|.+....       ....++.|+.|. ..+.+.+.    .+..+..+++|++|++++
T Consensus       215 ~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  293 (461)
T 1z7x_W          215 NCRDLCGI-VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG  293 (461)
T ss_dssp             HHHHHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             HHHHHHHH-HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence                3443 678899999999998776541       112356666665 22233221    244566689999999999


Q ss_pred             cCCccchhcccccccccCccccccCcccEEEecCCCCCCcc------ccccCCCCCcEEeecCCCccchhhccCcccccC
Q 040192          228 CYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL------TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMG  301 (386)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~------~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~  301 (386)
                      |.... .....+...-..    ..++|+.|++++|. ++..      ..+..+++|++|++++|. +++.....-..  .
T Consensus       294 n~i~~-~~~~~l~~~l~~----~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~--~  364 (461)
T 1z7x_W          294 NELGD-EGARLLCETLLE----PGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQ--G  364 (461)
T ss_dssp             CCCHH-HHHHHHHHHHTS----TTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHH--H
T ss_pred             CCCch-HHHHHHHHHhcc----CCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHH--H
Confidence            96543 222222110000    34799999999995 5543      235678999999999974 66553320000  0


Q ss_pred             CCCcccccceeeeccccccc-----cccCCCcCCCCccEEeecCcccCc
Q 040192          302 NLNPFAQFHFLCFSYLPNLK-----SIYRKPLPFPHLKEMKVIHCLKLK  345 (386)
Q Consensus       302 ~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~L~~L~i~~c~~L~  345 (386)
                      .....++|++|++++| .+.     .++.....+++|++|++++| .+.
T Consensus       365 l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~  411 (461)
T 1z7x_W          365 LGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLG  411 (461)
T ss_dssp             HTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCC
T ss_pred             HcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCC
Confidence            1112679999999999 555     45555566899999999986 344

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=3.2e-17  Score=160.73  Aligned_cols=136  Identities=21%  Similarity=0.363  Sum_probs=76.9

Q ss_pred             CCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhh
Q 040192           42 GLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGI  121 (386)
Q Consensus        42 ~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  121 (386)
                      .+.++.....++ +|+.|++++|.+..++....+++|+.|++++| .+..+++  +..+++|+.|++++| .+..++ .+
T Consensus        32 ~i~~~~~~~~L~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l  105 (605)
T 1m9s_A           32 SVTDAVTQNELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SL  105 (605)
T ss_dssp             CTTSEECHHHHT-TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TS
T ss_pred             CcccccchhcCC-CCCEEECcCCCCCCChHHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCC-CCCCCh-hh
Confidence            344444455555 66666666666666655566666666666666 4555444  456666666666666 555543 45


Q ss_pred             cCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192          122 SKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       122 ~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      ..+++|+.|++++|.+..++ .+..+++|+.|++++| .+..++.  +..+++|+.|++++|.+..
T Consensus       106 ~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A          106 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             TTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCCC
T ss_pred             ccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCCC
Confidence            55666666666666665543 3555566666666665 3333322  5555566666665554444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.70  E-value=4.8e-18  Score=158.60  Aligned_cols=38  Identities=24%  Similarity=0.183  Sum_probs=22.9

Q ss_pred             cCCCccCEEEcCCCCCCc-----ccHhhhccCCCCEEEccCCc
Q 040192          122 SKLISLQHLDLSNTGIAE-----LPKELNALVNLTCLNLEETW  159 (386)
Q Consensus       122 ~~l~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~  159 (386)
                      ..+++|++|++++|.++.     ++..+..+++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            455666666666666553     44555566666666666663

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=2.4e-16  Score=141.17  Aligned_cols=181  Identities=20%  Similarity=0.303  Sum_probs=149.8

Q ss_pred             EcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc
Q 040192           38 YAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF  117 (386)
Q Consensus        38 ~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  117 (386)
                      +.+..+.++.....++ +++.|++++|.+..++....+++|+.|++++| .+..+++  +..+++|++|++++| .+..+
T Consensus        31 l~~~~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n-~l~~~  105 (291)
T 1h6t_A           31 LKKKSVTDAVTQNELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDEN-KVKDL  105 (291)
T ss_dssp             TTCSCTTSEECHHHHH-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCCG
T ss_pred             hcCCCcccccchhhcC-cccEEEccCCCcccChhHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCC-cCCCC
Confidence            3444555566677888 99999999999999888889999999999999 7777776  789999999999999 88876


Q ss_pred             chhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCccc
Q 040192          118 PLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEF  197 (386)
Q Consensus       118 ~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L  197 (386)
                      + .+..+++|++|++++|.++.++ .+..+++|+.|++++| .+..++.  +..+++|+.|++++|.+...         
T Consensus       106 ~-~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~~---------  171 (291)
T 1h6t_A          106 S-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI---------  171 (291)
T ss_dssp             G-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC---------
T ss_pred             h-hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccccc---------
Confidence            5 4889999999999999999874 6788999999999999 5566643  89999999999999987765         


Q ss_pred             ccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCC
Q 040192          198 EQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCK  263 (386)
Q Consensus       198 ~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  263 (386)
                                    ..+..+++|+.|++++|.... ++  .+.         .+++|+.|++++|+
T Consensus       172 --------------~~l~~l~~L~~L~L~~N~i~~-l~--~l~---------~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          172 --------------VPLAGLTKLQNLYLSKNHISD-LR--ALA---------GLKNLDVLELFSQE  211 (291)
T ss_dssp             --------------GGGTTCTTCCEEECCSSCCCB-CG--GGT---------TCTTCSEEEEEEEE
T ss_pred             --------------hhhcCCCccCEEECCCCcCCC-Ch--hhc---------cCCCCCEEECcCCc
Confidence                          115567899999999986654 32  233         78999999999984

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.69  E-value=5.9e-16  Score=135.57  Aligned_cols=174  Identities=18%  Similarity=0.224  Sum_probs=127.3

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLS  133 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~  133 (386)
                      +.++++++++.+..+|... .++++.|++++| .+..+++..+..+++|++|++++| .+..+ +..+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCC-CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccCCCC-CCCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence            5678888888888877642 268888999888 677776666788888999999888 77766 4457888888888888


Q ss_pred             CCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192          134 NTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS  212 (386)
Q Consensus       134 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~  212 (386)
                      +|.++.++. .+..+++|+.|++++| .+..++...+..+++|++|++++|.+...                     ...
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------------~~~  149 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSI---------------------PAG  149 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------------CTT
T ss_pred             CCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCcc---------------------CHH
Confidence            888887763 4577888888888888 55667766577888888888888876654                     112


Q ss_pred             ccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCC
Q 040192          213 ALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCK  263 (386)
Q Consensus       213 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  263 (386)
                      .+..+++|+.|++++|+... .+...+.         .+++|+.|++++|+
T Consensus       150 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~---------~l~~L~~L~l~~N~  190 (251)
T 3m19_A          150 AFDKLTNLQTLSLSTNQLQS-VPHGAFD---------RLGKLQTITLFGNQ  190 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCSC-CCTTTTT---------TCTTCCEEECCSCC
T ss_pred             HcCcCcCCCEEECCCCcCCc-cCHHHHh---------CCCCCCEEEeeCCc
Confidence            34556778888887775543 3333333         56777777777774

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.69  E-value=2.6e-17  Score=152.17  Aligned_cols=252  Identities=14%  Similarity=0.111  Sum_probs=156.1

Q ss_pred             EEcCCCCCC-CCcccccccCccEEEecCCcccccCC------CCCCC-CCcEEecccCcCCCcCChhhhcCC-----CcC
Q 040192           37 VYAGAGLSE-TPDVRKWEKNVRRLSLMENQIENLSE------VPTCP-YLRTLFLNNNAPLRRIDSGFFQSM-----PRL  103 (386)
Q Consensus        37 ~~~~~~l~~-~p~~~~~~~~L~~L~l~~~~~~~~~~------~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L  103 (386)
                      .++..++.+ +|.+...+.++++|++++|.+.+.+.      ...++ +|++|++++| .++......+..+     ++|
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCc
Confidence            344445553 35555556358999999988887543      15666 8999999988 6766654444443     889


Q ss_pred             ceecccCCcccccc-chh----hcCC-CccCEEEcCCCCCCcccH-h----hhc-cCCCCEEEccCCcccc----ccchh
Q 040192          104 NVLNLSGAIRLYSF-PLG----ISKL-ISLQHLDLSNTGIAELPK-E----LNA-LVNLTCLNLEETWRLT----VIPRR  167 (386)
Q Consensus       104 ~~L~l~~~~~~~~~-~~~----~~~l-~~L~~L~l~~~~i~~l~~-~----~~~-l~~L~~L~l~~~~~~~----~~~~~  167 (386)
                      ++|++++| .++.. +..    +..+ ++|+.|++++|.++..+. .    +.. .++|++|++++|....    .++..
T Consensus        83 ~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           83 TSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             cEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            99999888 67644 332    3444 788999999888875542 2    223 3688999998884432    22232


Q ss_pred             hhcCCC-CCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccc-cCCcEEEeeccCCccchh---ccccccc
Q 040192          168 LISSFS-SLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADL-KRLNRLKIAECYGLAELK---MDYKSVV  242 (386)
Q Consensus       168 ~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~---~~~~~~~  242 (386)
                       +..++ +|++|++++|.+.......                 ....+..+ ++|++|++++|.......   ...+.. 
T Consensus       162 -l~~~~~~L~~L~Ls~n~l~~~~~~~-----------------l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~-  222 (362)
T 3goz_A          162 -LAAIPANVNSLNLRGNNLASKNCAE-----------------LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS-  222 (362)
T ss_dssp             -HHTSCTTCCEEECTTSCGGGSCHHH-----------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH-
T ss_pred             -HhcCCccccEeeecCCCCchhhHHH-----------------HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc-
Confidence             45554 8889998888776651100                 01223344 489999999886543110   111110 


Q ss_pred             ccCccccccCcccEEEecCCCCCCccc------cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecc
Q 040192          243 QNTGQSFVFHSLKKFQISYCKELKDLT------FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSY  316 (386)
Q Consensus       243 ~~~~~~~~~~~L~~L~l~~~~~l~~~~------~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  316 (386)
                             ..++|+.|++++| .+++.+      ....+++|+.|++++|. +..+..+....-...+..+++|+.|++++
T Consensus       223 -------~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~  293 (362)
T 3goz_A          223 -------IPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNG  293 (362)
T ss_dssp             -------SCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred             -------CCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCC
Confidence                   2468999999998 466542      23667889999998865 22221100000012566778888899988


Q ss_pred             cc
Q 040192          317 LP  318 (386)
Q Consensus       317 ~~  318 (386)
                      +.
T Consensus       294 N~  295 (362)
T 3goz_A          294 KE  295 (362)
T ss_dssp             CB
T ss_pred             Cc
Confidence            84

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.68  E-value=5e-17  Score=151.65  Aligned_cols=232  Identities=17%  Similarity=0.166  Sum_probs=167.3

Q ss_pred             ccccccCccEEEecCCccccc-----CC-CCCCCCCcEEecccCcCCC----cCChhh------hcCCCcCceecccCCc
Q 040192           49 VRKWEKNVRRLSLMENQIENL-----SE-VPTCPYLRTLFLNNNAPLR----RIDSGF------FQSMPRLNVLNLSGAI  112 (386)
Q Consensus        49 ~~~~~~~L~~L~l~~~~~~~~-----~~-~~~~~~L~~L~l~~~~~~~----~~~~~~------~~~l~~L~~L~l~~~~  112 (386)
                      +...+ ++++|++++|.+...     .. ...+++|++|++++| .+.    .+|..+      +..+++|++|++++| 
T Consensus        28 l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-  104 (386)
T 2ca6_A           28 LLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-  104 (386)
T ss_dssp             HHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-
T ss_pred             HhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCC-
Confidence            55667 899999999988862     11 368999999999997 444    233332      378999999999999 


Q ss_pred             cccc-----cchhhcCCCccCEEEcCCCCCCc-----ccHhhhcc---------CCCCEEEccCCccc-cccch--hhhc
Q 040192          113 RLYS-----FPLGISKLISLQHLDLSNTGIAE-----LPKELNAL---------VNLTCLNLEETWRL-TVIPR--RLIS  170 (386)
Q Consensus       113 ~~~~-----~~~~~~~l~~L~~L~l~~~~i~~-----l~~~~~~l---------~~L~~L~l~~~~~~-~~~~~--~~l~  170 (386)
                      .++.     ++..+..+++|++|++++|.++.     ++..+..+         ++|++|++++|... ..++.  ..+.
T Consensus       105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence            7765     57788899999999999999862     23334444         89999999999543 23442  2367


Q ss_pred             CCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCc----cchhcccccccccCc
Q 040192          171 SFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGL----AELKMDYKSVVQNTG  246 (386)
Q Consensus       171 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~~~  246 (386)
                      .+++|+.|++++|.+...+....                .+..+..+++|+.|++++|...    ..+ +..+.      
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l----------------~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l-~~~l~------  241 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHL----------------LLEGLAYCQELKVLDLQDNTFTHLGSSAL-AIALK------  241 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHH----------------HHTTGGGCTTCCEEECCSSCCHHHHHHHH-HHHGG------
T ss_pred             hCCCcCEEECcCCCCCHhHHHHH----------------HHHHhhcCCCccEEECcCCCCCcHHHHHH-HHHHc------
Confidence            89999999999998774310000                0124667889999999999764    222 22333      


Q ss_pred             cccccCcccEEEecCCCCCCcc------ccc--cCCCCCcEEeecCCCccch-----hhccCcccccCCCCcccccceee
Q 040192          247 QSFVFHSLKKFQISYCKELKDL------TFL--IFAPNLKSIEVDSCYALEE-----IVSDVPEVMMGNLNPFAQFHFLC  313 (386)
Q Consensus       247 ~~~~~~~L~~L~l~~~~~l~~~------~~l--~~l~~L~~L~l~~c~~~~~-----~~~~~~~~~~~~~~~~~~L~~L~  313 (386)
                         .+++|++|++++|. ++..      ..+  +.+++|++|+|++|. ++.     ++.       .....+++|++|+
T Consensus       242 ---~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~-------~l~~~l~~L~~L~  309 (386)
T 2ca6_A          242 ---SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKT-------VIDEKMPDLLFLE  309 (386)
T ss_dssp             ---GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHH-------HHHHHCTTCCEEE
T ss_pred             ---cCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHH-------HHHhcCCCceEEE
Confidence               68999999999994 6653      233  348999999999976 555     433       1224579999999


Q ss_pred             ecccc
Q 040192          314 FSYLP  318 (386)
Q Consensus       314 l~~~~  318 (386)
                      +++|+
T Consensus       310 l~~N~  314 (386)
T 2ca6_A          310 LNGNR  314 (386)
T ss_dssp             CTTSB
T ss_pred             ccCCc
Confidence            99984

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.68  E-value=1.3e-16  Score=144.28  Aligned_cols=77  Identities=17%  Similarity=0.151  Sum_probs=36.8

Q ss_pred             ccCcccEEEecCCCCCCcc--ccccCC---CCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccccccccc
Q 040192          250 VFHSLKKFQISYCKELKDL--TFLIFA---PNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIY  324 (386)
Q Consensus       250 ~~~~L~~L~l~~~~~l~~~--~~l~~l---~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  324 (386)
                      .+++|++|++++|. ++..  +.+..+   ++|++|++++|. ++.++.        .+  +++|++|+++++ .+..++
T Consensus       222 ~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~--------~~--~~~L~~L~Ls~N-~l~~~~  288 (310)
T 4glp_A          222 AGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPK--------GL--PAKLRVLDLSSN-RLNRAP  288 (310)
T ss_dssp             HTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCS--------CC--CSCCSCEECCSC-CCCSCC
T ss_pred             cCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCC-CCchhh--------hh--cCCCCEEECCCC-cCCCCc
Confidence            34555555555552 3332  122222   456666665533 444322        11  255666666665 444443


Q ss_pred             CCCcCCCCccEEeecC
Q 040192          325 RKPLPFPHLKEMKVIH  340 (386)
Q Consensus       325 ~~~~~~~~L~~L~i~~  340 (386)
                      . ...+++|+.|++++
T Consensus       289 ~-~~~l~~L~~L~L~~  303 (310)
T 4glp_A          289 Q-PDELPEVDNLTLDG  303 (310)
T ss_dssp             C-TTSCCCCSCEECSS
T ss_pred             h-hhhCCCccEEECcC
Confidence            3 34456666666655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.67  E-value=2e-16  Score=146.32  Aligned_cols=252  Identities=16%  Similarity=0.105  Sum_probs=171.2

Q ss_pred             EEecCCcccc-cCCC-CCCCCCcEEecccCcCCCcCCh----hhhcCCC-cCceecccCCcccccc-chhhcCC-----C
Q 040192           59 LSLMENQIEN-LSEV-PTCPYLRTLFLNNNAPLRRIDS----GFFQSMP-RLNVLNLSGAIRLYSF-PLGISKL-----I  125 (386)
Q Consensus        59 L~l~~~~~~~-~~~~-~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~-~~~~~~l-----~  125 (386)
                      +.++.+.+++ +|.. ...++|+.|++++| .++..+.    ..+..++ +|++|++++| .++.. +..+..+     +
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCC
Confidence            5677788876 4555 55666999999999 7887775    5578888 8999999999 77754 5555554     8


Q ss_pred             ccCEEEcCCCCCCccc-Hh----hhcc-CCCCEEEccCCccccccchhhh----cC-CCCCcEEEEeccCCccccCCCcC
Q 040192          126 SLQHLDLSNTGIAELP-KE----LNAL-VNLTCLNLEETWRLTVIPRRLI----SS-FSSLHVLRIFGSGYSYSDGMIGN  194 (386)
Q Consensus       126 ~L~~L~l~~~~i~~l~-~~----~~~l-~~L~~L~l~~~~~~~~~~~~~l----~~-l~~L~~L~l~~~~~~~~~~~~~l  194 (386)
                      +|++|++++|.++..+ ..    +..+ ++|+.|++++|. ++..+...+    .. .++|++|++++|.+.+.....  
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~--  157 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE--  157 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH--
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH--
Confidence            9999999999988544 22    4445 899999999995 455443223    33 369999999999887651100  


Q ss_pred             cccccccceeecCCcccccccccc-CCcEEEeeccCCccchhcccccccccCcccccc-CcccEEEecCCCCCCc-----
Q 040192          195 GEFEQLCGFRRSKSLDVSALADLK-RLNRLKIAECYGLAELKMDYKSVVQNTGQSFVF-HSLKKFQISYCKELKD-----  267 (386)
Q Consensus       195 ~~L~~L~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~-----  267 (386)
                                     ....+..++ +|++|++++|+.... ....+... ..    .+ ++|+.|++++| .+++     
T Consensus       158 ---------------l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~-l~----~~~~~L~~L~Ls~N-~i~~~~~~~  215 (362)
T 3goz_A          158 ---------------LIQILAAIPANVNSLNLRGNNLASK-NCAELAKF-LA----SIPASVTSLDLSAN-LLGLKSYAE  215 (362)
T ss_dssp             ---------------HHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHH-HH----TSCTTCCEEECTTS-CGGGSCHHH
T ss_pred             ---------------HHHHHhcCCccccEeeecCCCCchh-hHHHHHHH-HH----hCCCCCCEEECCCC-CCChhHHHH
Confidence                           012233444 899999999976542 22221100 00    34 59999999999 4665     


Q ss_pred             cc-cccC-CCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccc-------ccccccCCCcCCCCccEEee
Q 040192          268 LT-FLIF-APNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLP-------NLKSIYRKPLPFPHLKEMKV  338 (386)
Q Consensus       268 ~~-~l~~-l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~~~~~~~~~~~L~~L~i  338 (386)
                      ++ .+.. .++|++|+|++|. +++.....-.   ..+..+++|++|++++|.       .+..+......+++|+.|++
T Consensus       216 l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~---~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL  291 (362)
T 3goz_A          216 LAYIFSSIPNHVVSLNLCLNC-LHGPSLENLK---LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK  291 (362)
T ss_dssp             HHHHHHHSCTTCCEEECCSSC-CCCCCHHHHH---HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred             HHHHHhcCCCCceEEECcCCC-CCcHHHHHHH---HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence            22 2333 4699999999965 5554321000   245778899999999984       13334445567888999999


Q ss_pred             cCc
Q 040192          339 IHC  341 (386)
Q Consensus       339 ~~c  341 (386)
                      +++
T Consensus       292 ~~N  294 (362)
T 3goz_A          292 NGK  294 (362)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=6.2e-16  Score=130.22  Aligned_cols=152  Identities=19%  Similarity=0.255  Sum_probs=128.6

Q ss_pred             ccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccc-cchhhcCCCcc
Q 040192           49 VRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYS-FPLGISKLISL  127 (386)
Q Consensus        49 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L  127 (386)
                      ...++ ++++|++++|.+..++....+++|++|++++| .+..++.  +..+++|++|++++| .+.. .+..++.+++|
T Consensus        40 ~~~l~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           40 EAQMN-SLTYITLANINVTDLTGIEYAHNIKDLTINNI-HATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHHH-TCCEEEEESSCCSCCTTGGGCTTCSEEEEESC-CCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTTC
T ss_pred             hhhcC-CccEEeccCCCccChHHHhcCCCCCEEEccCC-CCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCCCC
Confidence            46677 99999999999999887789999999999999 6666653  789999999999999 7774 57788899999


Q ss_pred             CEEEcCCCCCCc-ccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeec
Q 040192          128 QHLDLSNTGIAE-LPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRS  206 (386)
Q Consensus       128 ~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~  206 (386)
                      ++|++++|.++. .+..++.+++|+.|++++|..++.++.  +..+++|+.|++++|.+...                  
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~------------------  174 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY------------------  174 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC------------------
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh------------------
Confidence            999999999984 667889999999999999965788874  89999999999999987765                  


Q ss_pred             CCccccccccccCCcEEEeeccCC
Q 040192          207 KSLDVSALADLKRLNRLKIAECYG  230 (386)
Q Consensus       207 ~~~~~~~l~~~~~L~~L~l~~~~~  230 (386)
                           ..+..+++|+.|++++|+.
T Consensus       175 -----~~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          175 -----RGIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             -----TTGGGCSSCCEEEECBC--
T ss_pred             -----HHhccCCCCCEEEeeCccc
Confidence                 1356678899999998864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.66  E-value=4.3e-17  Score=160.66  Aligned_cols=291  Identities=13%  Similarity=0.088  Sum_probs=173.3

Q ss_pred             cccEEEEcCCC-CC--CCCc-ccccccCccEEEecCCcccccC-----CC-CCCCCCcEEecccCcCCCcCC----hhhh
Q 040192           32 KEEHLVYAGAG-LS--ETPD-VRKWEKNVRRLSLMENQIENLS-----EV-PTCPYLRTLFLNNNAPLRRID----SGFF   97 (386)
Q Consensus        32 ~~~~l~~~~~~-l~--~~p~-~~~~~~~L~~L~l~~~~~~~~~-----~~-~~~~~L~~L~l~~~~~~~~~~----~~~~   97 (386)
                      ..+.+.+.+.. +.  .++. ...++ +|++|++++|.+.+..     .. ..+++|++|++++| .+..+.    ...+
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~  216 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVTHCR-KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIA  216 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHHHCT-TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHH
T ss_pred             cCcEEECcCCCCcCHHHHHHHHhhCC-CCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHH
Confidence            36677776543 11  1222 23566 9999999999876532     22 67899999999998 554222    2335


Q ss_pred             cCCCcCceecccCCccccccchhhcCCCccCEEEcCCC---------------------------CCCcccHhhhccCCC
Q 040192           98 QSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNT---------------------------GIAELPKELNALVNL  150 (386)
Q Consensus        98 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~---------------------------~i~~l~~~~~~l~~L  150 (386)
                      ..+++|++|++.+| .+..++..+..+++|+.|+++..                           ....+|..+..+++|
T Consensus       217 ~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L  295 (592)
T 3ogk_B          217 RNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI  295 (592)
T ss_dssp             HHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred             hhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence            68999999999998 77777777777888888887632                           122344445566677


Q ss_pred             CEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc---cCCCcCcccccccc------------eeecCCccccc-c
Q 040192          151 TCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS---DGMIGNGEFEQLCG------------FRRSKSLDVSA-L  214 (386)
Q Consensus       151 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~~------------~~~~~~~~~~~-l  214 (386)
                      +.|++++|.........++..+++|++|+++. .+...   .....+++|+.|.-            +....+..... .
T Consensus       296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~  374 (592)
T 3ogk_B          296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA  374 (592)
T ss_dssp             CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred             cEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence            77777776422222222356677777777762 22222   01123444555541            12222211112 2


Q ss_pred             ccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecC---CCCCCccc-------cccCCCCCcEEeecC
Q 040192          215 ADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISY---CKELKDLT-------FLIFAPNLKSIEVDS  284 (386)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~l~~~~-------~l~~l~~L~~L~l~~  284 (386)
                      ..+++|++|+++++.... .....+..        .+++|++|++++   |..+++.+       .+..+++|+.|++++
T Consensus       375 ~~~~~L~~L~l~~~~l~~-~~~~~l~~--------~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~  445 (592)
T 3ogk_B          375 QGCQELEYMAVYVSDITN-ESLESIGT--------YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL  445 (592)
T ss_dssp             HHCTTCSEEEEEESCCCH-HHHHHHHH--------HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred             hhCccCeEEEeecCCccH-HHHHHHHh--------hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence            346778888875554433 33333321        478888888873   44565531       134578888888877


Q ss_pred             CCc-cchhhccCcccccCCCCcccccceeeecccccccc--ccCCCcCCCCccEEeecCcc
Q 040192          285 CYA-LEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKS--IYRKPLPFPHLKEMKVIHCL  342 (386)
Q Consensus       285 c~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~i~~c~  342 (386)
                      |.. +.+....      .....+++|++|++++| .+.+  ++.....+++|++|+|++|+
T Consensus       446 ~~~~l~~~~~~------~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          446 RQGGLTDLGLS------YIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             CGGGCCHHHHH------HHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             CCCCccHHHHH------HHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC
Confidence            653 3332221      12234788999999988 4543  22234568999999999986

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.66  E-value=3e-16  Score=141.87  Aligned_cols=225  Identities=16%  Similarity=0.169  Sum_probs=161.4

Q ss_pred             CccEEEecCCcccc--cC---CCCCCCCCcEEecccCcCCC-cCChhhh-cCCCcCceecccCCcccccc-c----hhhc
Q 040192           55 NVRRLSLMENQIEN--LS---EVPTCPYLRTLFLNNNAPLR-RIDSGFF-QSMPRLNVLNLSGAIRLYSF-P----LGIS  122 (386)
Q Consensus        55 ~L~~L~l~~~~~~~--~~---~~~~~~~L~~L~l~~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~~~~~~-~----~~~~  122 (386)
                      .++.+.+.++.+..  +.   ....+++|+.|++++| .+. ..+..++ ..+++|++|++++| .+... +    ..+.
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTT
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhh
Confidence            57889998887764  22   2245677999999999 555 4454422 88999999999999 66642 2    3345


Q ss_pred             CCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccc--cch-hhhcCCCCCcEEEEeccCCccccCCCcCcccc
Q 040192          123 KLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTV--IPR-RLISSFSSLHVLRIFGSGYSYSDGMIGNGEFE  198 (386)
Q Consensus       123 ~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~  198 (386)
                      .+++|++|++++|.+..++ ..++.+++|++|++++|+..+.  ++. ..++.+++|++|++++|.++.....       
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-------  215 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV-------  215 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-------
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-------
Confidence            7899999999999998766 5678999999999999965432  322 2247889999999999987653100       


Q ss_pred             cccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCc
Q 040192          199 QLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLK  278 (386)
Q Consensus       199 ~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~  278 (386)
                                 ....+..+++|++|++++|+.....+.....   ..    .+++|++|++++| .++.++... +++|+
T Consensus       216 -----------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~---~~----~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~  275 (310)
T 4glp_A          216 -----------CAALAAAGVQPHSLDLSHNSLRATVNPSAPR---CM----WSSALNSLNLSFA-GLEQVPKGL-PAKLR  275 (310)
T ss_dssp             -----------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSS---CC----CCTTCCCEECCSS-CCCSCCSCC-CSCCS
T ss_pred             -----------HHHHHhcCCCCCEEECCCCCCCccchhhHHh---cc----CcCcCCEEECCCC-CCCchhhhh-cCCCC
Confidence                       0012356789999999999766532222211   00    2479999999999 566665422 38999


Q ss_pred             EEeecCCCccchhhccCcccccCCCCcccccceeeecccc
Q 040192          279 SIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLP  318 (386)
Q Consensus       279 ~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  318 (386)
                      .|++++|. ++.++         ....+++|++|++++++
T Consensus       276 ~L~Ls~N~-l~~~~---------~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          276 VLDLSSNR-LNRAP---------QPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CEECCSCC-CCSCC---------CTTSCCCCSCEECSSTT
T ss_pred             EEECCCCc-CCCCc---------hhhhCCCccEEECcCCC
Confidence            99999955 77652         45678999999999984

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.66  E-value=3e-17  Score=161.81  Aligned_cols=62  Identities=10%  Similarity=0.050  Sum_probs=35.0

Q ss_pred             CCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccccccccc--CCCcCCCCccEEeecCccc
Q 040192          274 APNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIY--RKPLPFPHLKEMKVIHCLK  343 (386)
Q Consensus       274 l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L~i~~c~~  343 (386)
                      +++|+.|+|++|. +++....      .....+++|++|+|++|+. .+..  .....+++|+.|++++|+.
T Consensus       455 ~~~L~~L~L~~~~-i~~~~~~------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAG-DSDLGMH------HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCC-SSHHHHH------HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCC-CcHHHHH------HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            5666666666654 3332221      1124567788888877754 3211  1233467888888887754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.65  E-value=2.9e-15  Score=127.23  Aligned_cols=151  Identities=24%  Similarity=0.383  Sum_probs=127.8

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+.+.+.++..+|.. -.+ ++++|++++|.+..++..  ..+++|++|++++| .+..++...+..+++|++|++++
T Consensus         9 ~~~v~c~~~~l~~~p~~-~~~-~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTG-IPA-QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TTEEECCSSCCSSCCSC-CCT-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCccCCCCC-CCC-CCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC
Confidence            45677888888888742 223 899999999999987664  78999999999999 88888887788999999999999


Q ss_pred             Cccccccch-hhcCCCccCEEEcCCCCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192          111 AIRLYSFPL-GISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       111 ~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      | .+..++. .+..+++|++|++++|.++.++.. +..+++|+.|++++| .+..++...+..+++|+.|++++|.+...
T Consensus        86 n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  163 (208)
T 2o6s_A           86 N-QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCT  163 (208)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             C-cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeecC
Confidence            9 8887754 468999999999999999988754 688999999999999 55677776689999999999999976554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.64  E-value=1.4e-15  Score=149.17  Aligned_cols=191  Identities=19%  Similarity=0.242  Sum_probs=146.9

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN  134 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  134 (386)
                      ++..+.+..+.+.++.....+++|+.|++++| .+..++.  +..+++|+.|++++| .+..+++ +..+++|+.|++++
T Consensus        22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTC-CCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCS
T ss_pred             HHHHHhccCCCcccccchhcCCCCCEEECcCC-CCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcC
Confidence            44555666666666555577888999999888 6777764  788999999999988 7777765 78889999999999


Q ss_pred             CCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccccc
Q 040192          135 TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSAL  214 (386)
Q Consensus       135 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l  214 (386)
                      |.+..++ .+..+++|+.|++++| .+..++.  +..+++|+.|++++|.+...                       ..+
T Consensus        97 N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~l-----------------------~~l  149 (605)
T 1m9s_A           97 NKIKDLS-SLKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKITDI-----------------------TVL  149 (605)
T ss_dssp             SCCCCCT-TSTTCTTCCEEECTTS-CCCCCGG--GGGCTTCSEEECCSSCCCCC-----------------------GGG
T ss_pred             CCCCCCh-hhccCCCCCEEEecCC-CCCCCcc--ccCCCccCEEECCCCccCCc-----------------------hhh
Confidence            9888876 5788899999999998 4556654  88889999999988876654                       235


Q ss_pred             ccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchh
Q 040192          215 ADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEI  291 (386)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~  291 (386)
                      ..+++|+.|++++|.... ...  +.         .+++|+.|+|++| .+++++.+..+++|+.|+|++|+ +...
T Consensus       150 ~~l~~L~~L~Ls~N~l~~-~~~--l~---------~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~-l~~~  212 (605)
T 1m9s_A          150 SRLTKLDTLSLEDNQISD-IVP--LA---------GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE-CLNK  212 (605)
T ss_dssp             GSCTTCSEEECCSSCCCC-CGG--GT---------TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEE-EECC
T ss_pred             cccCCCCEEECcCCcCCC-chh--hc---------cCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCc-CcCC
Confidence            567888888888886554 222  33         6888999999888 57777778888899999998865 4443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.64  E-value=3.4e-15  Score=128.78  Aligned_cols=151  Identities=27%  Similarity=0.425  Sum_probs=131.4

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+.+.+.++..+|..  .++++++|++++|.+..++..  ..+++|+.|++++| .+..++...+..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAG--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCC--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence            34588888889888862  223899999999999996443  78999999999999 78888888789999999999999


Q ss_pred             Cccccccch-hhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192          111 AIRLYSFPL-GISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       111 ~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      | .+..++. .+..+++|++|++++|.++.+|..+..+++|+.|++++| .+..++...+..+++|+.|++.+|.+...
T Consensus        98 N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           98 N-QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             C-cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            9 8888754 568999999999999999999999999999999999999 66777766689999999999999987654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=3.6e-15  Score=125.52  Aligned_cols=148  Identities=18%  Similarity=0.246  Sum_probs=126.7

Q ss_pred             cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCc-CChhhhcCCCcCceecccC
Q 040192           32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRR-IDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~  110 (386)
                      ....+.+.+..+..+|.+..++ +|++|++++|.+..++....+++|++|++++| .+.. .+.. ++.+++|++|++++
T Consensus        45 ~L~~L~l~~n~i~~l~~l~~l~-~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~-l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           45 SLTYITLANINVTDLTGIEYAH-NIKDLTINNIHATNYNPISGLSNLERLRIMGK-DVTSDKIPN-LSGLTSLTLLDISH  121 (197)
T ss_dssp             TCCEEEEESSCCSCCTTGGGCT-TCSEEEEESCCCSCCGGGTTCTTCCEEEEECT-TCBGGGSCC-CTTCTTCCEEECCS
T ss_pred             CccEEeccCCCccChHHHhcCC-CCCEEEccCCCCCcchhhhcCCCCCEEEeECC-ccCcccChh-hcCCCCCCEEEecC
Confidence            4678999999999999899999 99999999998888887789999999999999 6664 3433 78999999999999


Q ss_pred             Cccccc-cchhhcCCCccCEEEcCCCC-CCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192          111 AIRLYS-FPLGISKLISLQHLDLSNTG-IAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       111 ~~~~~~-~~~~~~~l~~L~~L~l~~~~-i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      | .+.. .+..++.+++|++|++++|. ++.++ .+..+++|+.|++++| .+..++.  +..+++|++|++++|.+..
T Consensus       122 n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          122 S-AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             S-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC----
T ss_pred             C-ccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCcccCC
Confidence            9 7774 57788999999999999998 88887 6889999999999999 5666763  8999999999999998754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=2.7e-15  Score=132.23  Aligned_cols=163  Identities=20%  Similarity=0.295  Sum_probs=134.3

Q ss_pred             EEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccc
Q 040192           36 LVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLY  115 (386)
Q Consensus        36 l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  115 (386)
                      +.+.+..+.+++.+..++ ++++|++++|.+..++....+++|+.|++++| .+..+++  +..+++|++|++++| .+.
T Consensus        24 l~l~~~~i~~~~~~~~l~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N-~l~   98 (263)
T 1xeu_A           24 QNLGKQSVTDLVSQKELS-GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRN-RLK   98 (263)
T ss_dssp             HHHTCSCTTSEECHHHHT-TCSEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSS-CCS
T ss_pred             HHhcCCCcccccchhhcC-cCcEEECcCCCcccchHHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCC-ccC
Confidence            335566777777788888 99999999999999887788999999999999 7887776  789999999999999 888


Q ss_pred             ccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCc
Q 040192          116 SFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNG  195 (386)
Q Consensus       116 ~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~  195 (386)
                      .++....  ++|+.|++++|.++.++ .+..+++|+.|++++| .+..++.  +..+++|+.|++++|.+.+.       
T Consensus        99 ~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~~-------  165 (263)
T 1xeu_A           99 NLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITNT-------  165 (263)
T ss_dssp             CCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCBC-------
T ss_pred             CcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcch-------
Confidence            7765333  89999999999999875 5888999999999999 5666764  88999999999999987765       


Q ss_pred             ccccccceeecCCccccccccccCCcEEEeeccCCcc
Q 040192          196 EFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLA  232 (386)
Q Consensus       196 ~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  232 (386)
                                      ..+..+++|+.|++++|+...
T Consensus       166 ----------------~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          166 ----------------GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             ----------------TTSTTCCCCCEEEEEEEEEEC
T ss_pred             ----------------HHhccCCCCCEEeCCCCcccC
Confidence                            224557788999998886543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.61  E-value=8.7e-17  Score=158.47  Aligned_cols=306  Identities=14%  Similarity=0.138  Sum_probs=181.1

Q ss_pred             CCeeechhHHHhhh-ccccccccEEEEcCC-CCCC--CCccc-ccccCccEEEecCCcccc-----cCCC-CCCCCCcEE
Q 040192           13 WKCTKEAMLPRMSS-DIEEEKEEHLVYAGA-GLSE--TPDVR-KWEKNVRRLSLMENQIEN-----LSEV-PTCPYLRTL   81 (386)
Q Consensus        13 ~~~~~~d~~~~~~~-~~~~~~~~~l~~~~~-~l~~--~p~~~-~~~~~L~~L~l~~~~~~~-----~~~~-~~~~~L~~L   81 (386)
                      ..|.+.|....... .+.  ....+.+.+. .+..  ++.+. .++ +|++|++++|.+.+     ++.. ..+++|++|
T Consensus       113 ~~~~~~~~~~~~l~~~~~--~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L  189 (594)
T 2p1m_B          113 KRMVVTDDCLELIAKSFK--NFKVLVLSSCEGFSTDGLAAIAATCR-NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL  189 (594)
T ss_dssp             ESCBCCHHHHHHHHHHCT--TCCEEEEESCEEEEHHHHHHHHHHCT-TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEE
T ss_pred             eCcEEcHHHHHHHHHhCC--CCcEEeCCCcCCCCHHHHHHHHHhCC-CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEE
Confidence            44556665544322 333  4677777654 3322  33433 566 99999999998765     2333 578899999


Q ss_pred             ecccCcCCCcCC----hhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCC---------------------
Q 040192           82 FLNNNAPLRRID----SGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTG---------------------  136 (386)
Q Consensus        82 ~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---------------------  136 (386)
                      ++++|.  ..+.    ..+...+++|++|++.+|..+..++..+..+++|+.|+++.+.                     
T Consensus       190 ~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L  267 (594)
T 2p1m_B          190 NISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL  267 (594)
T ss_dssp             ECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTC
T ss_pred             EecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCc
Confidence            999883  2232    2224567999999998875555566666677777777654331                     


Q ss_pred             ----------CCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc--c-CCCcCcccccccc-
Q 040192          137 ----------IAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS--D-GMIGNGEFEQLCG-  202 (386)
Q Consensus       137 ----------i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~-~~~~l~~L~~L~~-  202 (386)
                                ...++..+..+++|+.|++++|.........++..+++|++|++.+| +...  . ....+++|+.|.- 
T Consensus       268 ~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             CEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred             ccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence                      11344444578899999999885222222333568889999999887 3322  1 1113455655531 


Q ss_pred             ---------eeecCCccccccc-cccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEec-----CCCCCCc
Q 040192          203 ---------FRRSKSLDVSALA-DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQIS-----YCKELKD  267 (386)
Q Consensus       203 ---------~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~l~~  267 (386)
                               +....+.....+. .+++|++|.+.++.... .....+..        .+++|+.|+++     +|..+++
T Consensus       347 ~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~-~~~~~l~~--------~~~~L~~L~L~~~~~~~~~~l~~  417 (594)
T 2p1m_B          347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN-AALITIAR--------NRPNMTRFRLCIIEPKAPDYLTL  417 (594)
T ss_dssp             CSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH-HHHHHHHH--------HCTTCCEEEEEESSTTCCCTTTC
T ss_pred             cCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH-HHHHHHHh--------hCCCcceeEeecccCCCcccccC
Confidence                     1112221222232 37788888665554433 33333321        47888888888     4556664


Q ss_pred             cc-------cccCCCCCcEEeecCCCccchhhccCcccccCCCC-cccccceeeecccccccccc-CC-CcCCCCccEEe
Q 040192          268 LT-------FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLN-PFAQFHFLCFSYLPNLKSIY-RK-PLPFPHLKEMK  337 (386)
Q Consensus       268 ~~-------~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~-~~-~~~~~~L~~L~  337 (386)
                      .+       .+..+++|+.|++++  .+++....       .+. .+++|++|++++|. +.+.. .. ...+++|+.|+
T Consensus       418 ~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~-------~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~  487 (594)
T 2p1m_B          418 EPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFE-------YIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLE  487 (594)
T ss_dssp             CCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHH-------HHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEE
T ss_pred             CchhhHHHHHHhhCCCccEEeecC--cccHHHHH-------HHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEE
Confidence            32       145678888888866  34443331       222 36788888888884 43211 11 13478888888


Q ss_pred             ecCccc
Q 040192          338 VIHCLK  343 (386)
Q Consensus       338 i~~c~~  343 (386)
                      +++|+-
T Consensus       488 L~~n~~  493 (594)
T 2p1m_B          488 IRDCPF  493 (594)
T ss_dssp             EESCSC
T ss_pred             CcCCCC
Confidence            888763

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.60  E-value=9.1e-15  Score=125.26  Aligned_cols=151  Identities=25%  Similarity=0.365  Sum_probs=128.9

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+.+.+.++..+|..  +++++++|++++|.+..++..  ..+++|+.|++++| .+..+.+..+..+++|++|++++
T Consensus        13 ~~~v~c~~~~l~~iP~~--l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTN--LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TTEEECTTSCCSSCCSS--CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCS
T ss_pred             CCEEEcCCCCcCcCCCc--cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCC
Confidence            45788999999999862  223899999999999997753  88999999999999 78877666689999999999999


Q ss_pred             Cccccccch-hhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192          111 AIRLYSFPL-GISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       111 ~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      | .+..+|. .+..+++|++|++++|.++.++ ..+..+++|+.|++++| .+..++...+..+++|+.|++++|.+.-.
T Consensus        90 N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           90 N-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             C-cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            9 8888865 4688999999999999999774 57889999999999999 56677766689999999999999977654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=1.6e-15  Score=133.71  Aligned_cols=123  Identities=16%  Similarity=0.229  Sum_probs=75.9

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN  134 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  134 (386)
                      +++.+.+.++.+.+++....+++|+.|++++| .+..++.  +..+++|++|++++| .+..++. +..+++|++|++++
T Consensus        20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNS-NIQSLAG--MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHTCSCTTSEECHHHHTTCSEEECTTS-CCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCS
T ss_pred             HHHHHHhcCCCcccccchhhcCcCcEEECcCC-CcccchH--HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCC
Confidence            45566666666666655566777777777776 5665552  566677777777766 6666554 66666777777777


Q ss_pred             CCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192          135 TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       135 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      |.++.+|....  ++|+.|++++| .+..++.  +..+++|+.|++++|.+.+
T Consensus        95 N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A           95 NRLKNLNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             SCCSCCTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCCB
T ss_pred             CccCCcCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCCC
Confidence            66666553222  66666666666 3444443  5566666666666655444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.60  E-value=8.9e-15  Score=124.18  Aligned_cols=165  Identities=21%  Similarity=0.284  Sum_probs=114.8

Q ss_pred             cEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccch-hhcCCCccCEEEcCCC
Q 040192           57 RRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPL-GISKLISLQHLDLSNT  135 (386)
Q Consensus        57 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~  135 (386)
                      +.++.+++.+..+|.. ..++|+.|++++| .+..++...++.+++|++|++++| .+..++. .+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTG-IPAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCCCC-CCCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence            4666777777766543 3458888888888 677777766778888888888888 7776654 4577888888888888


Q ss_pred             CCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccccc
Q 040192          136 GIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSAL  214 (386)
Q Consensus       136 ~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l  214 (386)
                      .++.++.. +..+++|+.|++++| .+..++...+..+++|++|++++|.+....                     ...+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~---------------------~~~~  144 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVP---------------------DGVF  144 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC---------------------TTTT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeC---------------------HHHh
Confidence            88877643 567888888888888 455666555677888888888887666541                     1224


Q ss_pred             ccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCC
Q 040192          215 ADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCK  263 (386)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  263 (386)
                      ..+++|+.|++++|....                 .+++|+.|.++.|.
T Consensus       145 ~~l~~L~~L~l~~N~~~~-----------------~~~~l~~L~~~~n~  176 (208)
T 2o6s_A          145 DRLTSLQYIWLHDNPWDC-----------------TCPGIRYLSEWINK  176 (208)
T ss_dssp             TTCTTCCEEECCSCCBCC-----------------CTTTTHHHHHHHHH
T ss_pred             ccCCCccEEEecCCCeec-----------------CCCCHHHHHHHHHh
Confidence            456677777777763221                 45666666666664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.59  E-value=1.8e-14  Score=123.45  Aligned_cols=151  Identities=21%  Similarity=0.319  Sum_probs=127.9

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC---CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE---VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS  109 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  109 (386)
                      ...+.+.+..+.++|.  .++..+++|++++|.+..++.   ...+++|+.|++++| .+..+++..+..+++|++|+++
T Consensus        13 ~~~l~~s~n~l~~iP~--~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPE--HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCSSCCS--CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCcccCcc--CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC
Confidence            3478899999999986  223378999999999999743   378999999999999 7888887668999999999999


Q ss_pred             CCccccccc-hhhcCCCccCEEEcCCCCCCcc-cHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192          110 GAIRLYSFP-LGISKLISLQHLDLSNTGIAEL-PKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       110 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      +| .+..++ ..+..+++|++|++++|.++.+ |..+..+++|+.|++++| .+..++...+..+++|+.|++++|.+..
T Consensus        90 ~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           90 SN-RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SS-CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CC-ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            99 888774 5688999999999999999977 567889999999999999 5556644458999999999999998775


Q ss_pred             c
Q 040192          188 S  188 (386)
Q Consensus       188 ~  188 (386)
                      .
T Consensus       168 ~  168 (220)
T 2v70_A          168 N  168 (220)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.58  E-value=1.1e-14  Score=134.53  Aligned_cols=151  Identities=25%  Similarity=0.338  Sum_probs=128.7

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--C-CCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--P-TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS  109 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  109 (386)
                      ...+.+.+.++..+|.  .++..++.|++++|.+..++..  . .+++|+.|++++| .+..+++..+..+++|++|+++
T Consensus        20 ~~~l~c~~~~l~~iP~--~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQ--SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCSSCCS--SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccCc--cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence            3578999999999986  2333799999999999997665  4 8999999999999 8888887778999999999999


Q ss_pred             CCccccccc-hhhcCCCccCEEEcCCCCCCcc-cHhhhccCCCCEEEccCCccccccchhhh---cCCCCCcEEEEeccC
Q 040192          110 GAIRLYSFP-LGISKLISLQHLDLSNTGIAEL-PKELNALVNLTCLNLEETWRLTVIPRRLI---SSFSSLHVLRIFGSG  184 (386)
Q Consensus       110 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~  184 (386)
                      +| .+..++ ..+..+++|++|++++|.++.+ +..+..+++|+.|++++| .+..+|..++   ..+++|+.|++++|.
T Consensus        97 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           97 SN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             SS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CC-cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            99 888775 4688999999999999999977 467889999999999999 6677887655   679999999999998


Q ss_pred             Cccc
Q 040192          185 YSYS  188 (386)
Q Consensus       185 ~~~~  188 (386)
                      +...
T Consensus       175 l~~l  178 (361)
T 2xot_A          175 LKKL  178 (361)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            8765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.57  E-value=2.4e-14  Score=122.65  Aligned_cols=154  Identities=18%  Similarity=0.297  Sum_probs=119.8

Q ss_pred             ccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcCC
Q 040192           56 VRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLSN  134 (386)
Q Consensus        56 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~  134 (386)
                      -+.++.+++.+..+|... .++|+.|++++| .+..+++..+..+++|++|++++| .+..+ |..+..+++|++|++++
T Consensus        13 ~~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNL-PETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TTEEECTTSCCSSCCSSC-CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCS
T ss_pred             CCEEEcCCCCcCcCCCcc-CcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCC
Confidence            356788888888877642 278999999998 788777766888999999999998 77766 67888899999999999


Q ss_pred             CCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccc
Q 040192          135 TGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSA  213 (386)
Q Consensus       135 ~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~  213 (386)
                      |.++.+|.. +..+++|+.|++++| .+..++...+..+++|+.|++++|.+....                     ...
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------~~~  147 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIA---------------------KGT  147 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC---------------------TTT
T ss_pred             CcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEEC---------------------HHH
Confidence            999888754 577899999999999 555665545888899999999988777651                     223


Q ss_pred             cccccCCcEEEeeccCCccch
Q 040192          214 LADLKRLNRLKIAECYGLAEL  234 (386)
Q Consensus       214 l~~~~~L~~L~l~~~~~~~~~  234 (386)
                      +..+++|+.|++++|...-+.
T Consensus       148 ~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B          148 FSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             TTTCTTCCEEECCSSCEECSG
T ss_pred             HhCCCCCCEEEeCCCCcCCCC
Confidence            555678888888887654433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.57  E-value=6e-14  Score=136.20  Aligned_cols=181  Identities=20%  Similarity=0.261  Sum_probs=102.6

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN  134 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  134 (386)
                      +++.|++++|.+.++|... +++|+.|++++| .+..+|    ..+++|++|++++| .+..+|. +..  +|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQN-ALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC-CTTCSEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhH-cCCCCEEECcCC-CCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence            4666666666666655432 356666776666 555555    23566666776666 6665655 433  666777777


Q ss_pred             CCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccccc
Q 040192          135 TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSAL  214 (386)
Q Consensus       135 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l  214 (386)
                      |.++.+|.   .+++|+.|++++| .+..+|.    .+++|+.|++++|.+...                      +. +
T Consensus       130 N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~~l----------------------p~-l  178 (571)
T 3cvr_A          130 NQLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLTFL----------------------PE-L  178 (571)
T ss_dssp             SCCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC----------------------CC-C
T ss_pred             CcCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCCCc----------------------ch-h
Confidence            66666665   4566777777666 3344543    356666777666655543                      11 2


Q ss_pred             ccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc-ccCCCCCcEEeecCCC
Q 040192          215 ADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF-LIFAPNLKSIEVDSCY  286 (386)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-l~~l~~L~~L~l~~c~  286 (386)
                      .  ++|+.|++++|+.. .++.  +..    .+.+..+.|+.|++++| .++.++. +..+++|+.|+|++|+
T Consensus       179 ~--~~L~~L~Ls~N~L~-~lp~--~~~----~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          179 P--ESLEALDVSTNLLE-SLPA--VPV----RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             C--TTCCEEECCSSCCS-SCCC--CC------------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             h--CCCCEEECcCCCCC-chhh--HHH----hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence            2  56667777666443 2322  210    00001222377777777 4555543 5557777777777755

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.55  E-value=4.2e-14  Score=121.07  Aligned_cols=155  Identities=17%  Similarity=0.280  Sum_probs=113.4

Q ss_pred             ccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcC-ChhhhcCCCcCceecccCCccccccc-hhhcCCCccCEEEcC
Q 040192           56 VRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRI-DSGFFQSMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLS  133 (386)
Q Consensus        56 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~  133 (386)
                      -++++++++.+..+|.. -.+.++.|++++| .+..+ +...+..+++|++|++++| .+..++ ..+..+++|++|+++
T Consensus        13 ~~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEH-IPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCSSCCSC-CCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCcccCccC-CCCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC
Confidence            45788888888887653 2446788888888 66665 3455778888899988888 777664 467888888888888


Q ss_pred             CCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192          134 NTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS  212 (386)
Q Consensus       134 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~  212 (386)
                      +|.++.++. .+..+++|+.|++++| .+..++...+..+++|+.|++++|.+...                     .+.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------------~~~  147 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTV---------------------APG  147 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCB---------------------CTT
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEE---------------------CHH
Confidence            888887764 4778888888888888 44555444478888888888888877664                     123


Q ss_pred             ccccccCCcEEEeeccCCccchh
Q 040192          213 ALADLKRLNRLKIAECYGLAELK  235 (386)
Q Consensus       213 ~l~~~~~L~~L~l~~~~~~~~~~  235 (386)
                      .+..+++|+.|++++|...-+..
T Consensus       148 ~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          148 AFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTTTCTTCCEEECCSCCEECSGG
T ss_pred             HhcCCCCCCEEEecCcCCcCCCc
Confidence            45566778888888776554333

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.54  E-value=1.4e-13  Score=133.69  Aligned_cols=188  Identities=16%  Similarity=0.126  Sum_probs=146.0

Q ss_pred             cccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192           28 IEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN  107 (386)
Q Consensus        28 ~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  107 (386)
                      |.......+.+.+..+.++|.-. .+ +|+.|++++|.+..+|  ..+++|+.|++++| .+..+|.  +..  +|++|+
T Consensus        56 C~~~~L~~L~Ls~n~L~~lp~~l-~~-~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N-~l~~ip~--l~~--~L~~L~  126 (571)
T 3cvr_A           56 CLINQFSELQLNRLNLSSLPDNL-PP-QITVLEITQNALISLP--ELPASLEYLDACDN-RLSTLPE--LPA--SLKHLD  126 (571)
T ss_dssp             HHHTTCSEEECCSSCCSCCCSCC-CT-TCSEEECCSSCCSCCC--CCCTTCCEEECCSS-CCSCCCC--CCT--TCCEEE
T ss_pred             cccCCccEEEeCCCCCCccCHhH-cC-CCCEEECcCCCCcccc--cccCCCCEEEccCC-CCCCcch--hhc--CCCEEE
Confidence            44335788999999999988622 35 8999999999999988  67899999999999 7777877  444  999999


Q ss_pred             ccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192          108 LSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       108 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      +++| .++.+|.   .+++|++|++++|.++.+|.   .+++|+.|++++| .+..+|.  +.  ++|+.|++++|.++.
T Consensus       127 Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          127 VDNN-QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLES  194 (571)
T ss_dssp             CCSS-CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCSS
T ss_pred             CCCC-cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCCc
Confidence            9999 8888876   68999999999999999886   5789999999999 5566877  44  899999999998886


Q ss_pred             ccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCC
Q 040192          188 SDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELK  266 (386)
Q Consensus       188 ~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  266 (386)
                      ...  ...+|                ....+.|+.|++++|+... ++....          .+++|+.|++++|+ ++
T Consensus       195 lp~--~~~~L----------------~~~~~~L~~L~Ls~N~l~~-lp~~l~----------~l~~L~~L~L~~N~-l~  243 (571)
T 3cvr_A          195 LPA--VPVRN----------------HHSEETEIFFRCRENRITH-IPENIL----------SLDPTCTIILEDNP-LS  243 (571)
T ss_dssp             CCC--CC------------------------CCEEEECCSSCCCC-CCGGGG----------GSCTTEEEECCSSS-CC
T ss_pred             hhh--HHHhh----------------hcccccceEEecCCCccee-cCHHHh----------cCCCCCEEEeeCCc-CC
Confidence            521  10011                1122345999999987653 443332          68999999999995 44

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.53  E-value=1.6e-13  Score=118.21  Aligned_cols=151  Identities=21%  Similarity=0.268  Sum_probs=126.0

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc-hhhcCCCccCEEEcC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLS  133 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~  133 (386)
                      .-+.++.+++.+..+|.. -.++|+.|++++| .+..+++..+..+++|++|++++| .+..++ ..+..+++|++|+++
T Consensus        20 s~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAG-IPTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCSSCCSC-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcCccCCC-CCCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECC
Confidence            567889999998888764 3489999999999 787776666899999999999999 888886 456899999999999


Q ss_pred             CCCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192          134 NTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS  212 (386)
Q Consensus       134 ~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~  212 (386)
                      +|.++.++.. +..+++|+.|++++| .+..+|.. +..+++|+.|++++|.+....                     ..
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~---------------------~~  153 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSIP---------------------HG  153 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCCC---------------------TT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCccC---------------------HH
Confidence            9999988754 678999999999999 56688876 799999999999999887651                     13


Q ss_pred             ccccccCCcEEEeeccCCc
Q 040192          213 ALADLKRLNRLKIAECYGL  231 (386)
Q Consensus       213 ~l~~~~~L~~L~l~~~~~~  231 (386)
                      .+..+++|+.|++.+|...
T Consensus       154 ~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTTTCTTCCEEECTTSCBC
T ss_pred             HHhCCCCCCEEEeeCCCcc
Confidence            3556788999999888654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.52  E-value=7.9e-14  Score=128.70  Aligned_cols=176  Identities=19%  Similarity=0.174  Sum_probs=128.6

Q ss_pred             ccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhc-CCCcCceecccCCccccccc-hhhcCCCccCEEEcC
Q 040192           56 VRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQ-SMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLS  133 (386)
Q Consensus        56 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~  133 (386)
                      -+.++++++.+..+|.. -.+.++.|++++| .+..++...+. .+++|++|++++| .+..++ ..+..+++|++|+++
T Consensus        20 ~~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQS-LPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCSSCCSS-CCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccCcc-CCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence            36788888888887764 3356889999999 78877776666 8999999999998 888775 568889999999999


Q ss_pred             CCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192          134 NTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS  212 (386)
Q Consensus       134 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~  212 (386)
                      +|.++.++. .+..+++|+.|++++| .+..++...+..+++|+.|++++|.+......                  ...
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~------------------~~~  157 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE------------------LIK  157 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGG------------------GTC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHH------------------Hhc
Confidence            999987764 5778899999999999 45566554588899999999999877765110                  001


Q ss_pred             ccccccCCcEEEeeccCCccchhcccccccccCccccccCc--ccEEEecCCC
Q 040192          213 ALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHS--LKKFQISYCK  263 (386)
Q Consensus       213 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~  263 (386)
                      .+..+++|+.|++++|+... ++...+.         .++.  ++.|++.+|+
T Consensus       158 ~~~~l~~L~~L~L~~N~l~~-l~~~~~~---------~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          158 DGNKLPKLMLLDLSSNKLKK-LPLTDLQ---------KLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             ----CTTCCEEECCSSCCCC-CCHHHHH---------HSCHHHHTTEECCSSC
T ss_pred             CcccCCcCCEEECCCCCCCc-cCHHHhh---------hccHhhcceEEecCCC
Confidence            12456788888888876543 4433333         4454  4778888775

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.49  E-value=1e-13  Score=113.38  Aligned_cols=129  Identities=24%  Similarity=0.318  Sum_probs=110.1

Q ss_pred             CccEEEecCCccc--ccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccc-cchhhcCCCccCEE
Q 040192           55 NVRRLSLMENQIE--NLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYS-FPLGISKLISLQHL  130 (386)
Q Consensus        55 ~L~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L  130 (386)
                      ++++|++++|.+.  .+|.. ..+++|+.|++++| .+..+ . .+..+++|++|++++| .+.. +|..+..+++|++|
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-S-NLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-S-SCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-h-hhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence            8999999999998  68777 88999999999999 67776 3 3789999999999999 7776 67777789999999


Q ss_pred             EcCCCCCCccc--HhhhccCCCCEEEccCCccccccch---hhhcCCCCCcEEEEeccCCccc
Q 040192          131 DLSNTGIAELP--KELNALVNLTCLNLEETWRLTVIPR---RLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       131 ~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      ++++|.++.++  ..+..+++|+.|++++| .+..++.   ..+..+++|+.|++++|...+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            99999999876  67889999999999999 4556555   3588999999999999877665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.47  E-value=1.6e-13  Score=109.84  Aligned_cols=122  Identities=25%  Similarity=0.313  Sum_probs=102.6

Q ss_pred             CccEEEecCCccc--ccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccc-cchhhcCCCccCEE
Q 040192           55 NVRRLSLMENQIE--NLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYS-FPLGISKLISLQHL  130 (386)
Q Consensus        55 ~L~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L  130 (386)
                      ++++|++++|.+.  .+|.. ..+++|+.|++++| .+..+  ..++.+++|++|++++| .+.. +|..+..+++|++|
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEE
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEE
Confidence            7999999999998  57766 88999999999999 77766  33788999999999999 7776 67777789999999


Q ss_pred             EcCCCCCCccc--HhhhccCCCCEEEccCCccccccch---hhhcCCCCCcEEEEe
Q 040192          131 DLSNTGIAELP--KELNALVNLTCLNLEETWRLTVIPR---RLISSFSSLHVLRIF  181 (386)
Q Consensus       131 ~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~  181 (386)
                      ++++|.++.++  ..++.+++|+.|++++| .+..++.   ..+..+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            99999998765  67889999999999999 4555554   458889999998765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1.3e-13  Score=113.72  Aligned_cols=136  Identities=22%  Similarity=0.264  Sum_probs=109.6

Q ss_pred             CcccccccCccEEEecCCcccccCCCCCCC-CCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchh-hcCC
Q 040192           47 PDVRKWEKNVRRLSLMENQIENLSEVPTCP-YLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLG-ISKL  124 (386)
Q Consensus        47 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l  124 (386)
                      +.+.... ++++|++++|.+..++....+. +|+.|++++| .+..++ . +..+++|++|++++| .+..+|+. +..+
T Consensus        13 ~~~~~~~-~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~-~-l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l   87 (176)
T 1a9n_A           13 AQYTNAV-RDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLD-G-FPLLRRLKTLLVNNN-RICRIGEGLDQAL   87 (176)
T ss_dssp             CEEECTT-SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEEC-C-CCCCSSCCEEECCSS-CCCEECSCHHHHC
T ss_pred             HhcCCcC-CceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCccc-c-cccCCCCCEEECCCC-cccccCcchhhcC
Confidence            3444555 8999999999999887765544 9999999999 777663 3 788999999999999 88877654 4889


Q ss_pred             CccCEEEcCCCCCCcccH--hhhccCCCCEEEccCCccccccchh---hhcCCCCCcEEEEeccCCccc
Q 040192          125 ISLQHLDLSNTGIAELPK--ELNALVNLTCLNLEETWRLTVIPRR---LISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       125 ~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      ++|++|++++|.++.+|.  .+..+++|+.|++++|+ +..+|..   ++..+++|+.|+++++...+.
T Consensus        88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A           88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            999999999999988886  78889999999999994 4566653   478899999999988866544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.44  E-value=4.1e-15  Score=144.90  Aligned_cols=104  Identities=17%  Similarity=0.172  Sum_probs=55.3

Q ss_pred             CCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeecc
Q 040192          149 NLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAEC  228 (386)
Q Consensus       149 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~  228 (386)
                      .|+.|++++| .+..+|.  ++.+++|+.|++++|.+...                      +..+..+++|+.|++++|
T Consensus       442 ~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N~l~~l----------------------p~~~~~l~~L~~L~Ls~N  496 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRAL----------------------PPALAALRCLEVLQASDN  496 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCCCC----------------------CGGGGGCTTCCEEECCSS
T ss_pred             CceEEEecCC-CCCCCcC--ccccccCcEeecCccccccc----------------------chhhhcCCCCCEEECCCC
Confidence            3556666665 3444553  55566666666666555432                      233445556666666665


Q ss_pred             CCccchhcccccccccCccccccCcccEEEecCCCCCCcc---ccccCCCCCcEEeecCCCccchh
Q 040192          229 YGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL---TFLIFAPNLKSIEVDSCYALEEI  291 (386)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~l~~l~~L~~L~l~~c~~~~~~  291 (386)
                      +... ++  .+.         .+++|+.|++++| .++.+   ..++.+++|+.|+|++|+ ++..
T Consensus       497 ~l~~-lp--~l~---------~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~  548 (567)
T 1dce_A          497 ALEN-VD--GVA---------NLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQE  548 (567)
T ss_dssp             CCCC-CG--GGT---------TCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGS
T ss_pred             CCCC-Cc--ccC---------CCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCC
Confidence            4433 22  222         5666666666666 34433   235566666666666643 4444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=6.8e-13  Score=109.38  Aligned_cols=127  Identities=20%  Similarity=0.294  Sum_probs=112.9

Q ss_pred             cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192           32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA  111 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  111 (386)
                      ....+.+.+..+..+|.+..+.++++.|++++|.+.+++....+++|+.|++++| .+..+++..+..+++|++|++++|
T Consensus        20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N   98 (176)
T 1a9n_A           20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN   98 (176)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC
T ss_pred             CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC
Confidence            4678889999999998877765589999999999999876799999999999999 888888776789999999999999


Q ss_pred             ccccccch--hhcCCCccCEEEcCCCCCCcccHh----hhccCCCCEEEccCCcc
Q 040192          112 IRLYSFPL--GISKLISLQHLDLSNTGIAELPKE----LNALVNLTCLNLEETWR  160 (386)
Q Consensus       112 ~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~~~----~~~l~~L~~L~l~~~~~  160 (386)
                       .++.+|.  .+..+++|++|++++|.++.+|..    +..+++|+.|+++.|..
T Consensus        99 -~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           99 -SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             -CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             -cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence             8888876  788999999999999999988874    88999999999999843

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.40  E-value=1.6e-12  Score=106.18  Aligned_cols=131  Identities=26%  Similarity=0.321  Sum_probs=112.0

Q ss_pred             cccEEEEcCCCCC--CCCcc-cccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecc
Q 040192           32 KEEHLVYAGAGLS--ETPDV-RKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNL  108 (386)
Q Consensus        32 ~~~~l~~~~~~l~--~~p~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  108 (386)
                      ....+.+.+..+.  .+|.. ..++ +|+.|++++|.+..++....+++|+.|++++| .+....+..+..+++|++|++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISVSNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCCSSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCChhhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEEec
Confidence            5788999998887  77764 7788 99999999999998855689999999999999 676644454778999999999


Q ss_pred             cCCccccccc--hhhcCCCccCEEEcCCCCCCcccH----hhhccCCCCEEEccCCccccccch
Q 040192          109 SGAIRLYSFP--LGISKLISLQHLDLSNTGIAELPK----ELNALVNLTCLNLEETWRLTVIPR  166 (386)
Q Consensus       109 ~~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~l~~----~~~~l~~L~~L~l~~~~~~~~~~~  166 (386)
                      ++| .+..++  ..+..+++|++|++++|.++.+|.    .+..+++|+.|++++| ....+|.
T Consensus       103 s~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~  164 (168)
T 2ell_A          103 SGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD  164 (168)
T ss_dssp             BSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred             cCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence            999 888875  688999999999999999998876    7889999999999999 4455554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.39  E-value=1.1e-12  Score=104.89  Aligned_cols=111  Identities=22%  Similarity=0.275  Sum_probs=94.3

Q ss_pred             CCCCCCcEEecccCcCCC--cCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCc-ccHhhhccCC
Q 040192           73 PTCPYLRTLFLNNNAPLR--RIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAE-LPKELNALVN  149 (386)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-l~~~~~~l~~  149 (386)
                      ...++|+.|++++| .+.  .++.. +..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..+..+++
T Consensus        14 ~~~~~l~~L~l~~n-~l~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           14 RTPSDVKELVLDNS-RSNEGKLEGL-TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             CCGGGCSEEECTTC-BCBTTBCCSC-CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             CCCccCeEEEccCC-cCChhHHHHH-HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence            45689999999999 665  66664 789999999999999 88877 678899999999999999997 7777778999


Q ss_pred             CCEEEccCCccccccc-hhhhcCCCCCcEEEEeccCCccc
Q 040192          150 LTCLNLEETWRLTVIP-RRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       150 L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      |+.|++++|. +..++ ...+..+++|++|++++|.+...
T Consensus        90 L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~  128 (149)
T 2je0_A           90 LTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNL  128 (149)
T ss_dssp             CCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred             CCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence            9999999994 55554 13489999999999999988765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.38  E-value=3.8e-12  Score=106.44  Aligned_cols=121  Identities=26%  Similarity=0.326  Sum_probs=65.2

Q ss_pred             cEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCc
Q 040192           34 EHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI  112 (386)
Q Consensus        34 ~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  112 (386)
                      ..+.+.+.++..+|..  +++++++|++++|.+..+|.. ..+++|+.|++++| .+..+++..|..+++|++|++++| 
T Consensus        13 ~~l~~~~~~l~~ip~~--~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG--IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-   88 (193)
T ss_dssp             TEEECTTSCCSSCCSC--CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             CEEEcCCCCCCcCCCC--CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-
Confidence            4566666666666641  122566666666666655433 55556666666655 455555444555555555555555 


Q ss_pred             cccccc-hhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCC
Q 040192          113 RLYSFP-LGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEET  158 (386)
Q Consensus       113 ~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~  158 (386)
                      .+..++ ..+..+++|++|++++|.++.+|. .+..+++|+.|++++|
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            455442 345555555555555555555443 2444555555555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.38  E-value=5.6e-12  Score=103.92  Aligned_cols=126  Identities=21%  Similarity=0.355  Sum_probs=68.0

Q ss_pred             EEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccch-hhcCCCccCEEEcCCCC
Q 040192           58 RLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPL-GISKLISLQHLDLSNTG  136 (386)
Q Consensus        58 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~  136 (386)
                      .++++++.+..+|.. ..++|+.|++++| .+..++...++.+++|++|++++| .+..++. .+..+++|++|++++|.
T Consensus        11 ~l~~~~~~l~~~p~~-~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           11 EIRCNSKGLTSVPTG-IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             EEECCSSCCSSCCTT-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCccCCCC-CCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCC
Confidence            344444444444321 2245555555555 444444444555566666666655 5554432 34556666666666666


Q ss_pred             CCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192          137 IAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       137 i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      ++.++.. +..+++|+.|++++| .+..++..++..+++|+.|++++|.+..
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence            6655532 455666666666666 3445555445566666666666665544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.37  E-value=5.6e-12  Score=105.43  Aligned_cols=128  Identities=19%  Similarity=0.285  Sum_probs=110.2

Q ss_pred             ccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc-hhhcCCCccCEEEcCC
Q 040192           56 VRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLSN  134 (386)
Q Consensus        56 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~  134 (386)
                      -+.++++++.+..+|.. -.++|+.|++++| .+..++.. +..+++|++|++++| .+..++ ..|..+++|++|++++
T Consensus        12 ~~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n-~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKG-IPRDVTELYLDGN-QFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TTEEECTTSCCSSCCSC-CCTTCCEEECCSS-CCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCCCcCCCC-CCCCCCEEECCCC-cCchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC
Confidence            35788999999988764 3469999999999 78888854 899999999999999 888774 5689999999999999


Q ss_pred             CCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192          135 TGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       135 ~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      |.++.++. .+..+++|+.|++++| .+..++..++..+++|+.|++++|.+.-.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            99998774 6889999999999999 66778876689999999999999977644

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.37  E-value=3.1e-12  Score=106.93  Aligned_cols=108  Identities=27%  Similarity=0.386  Sum_probs=54.9

Q ss_pred             CCcEEecccCcCCCcCCh-hhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEE
Q 040192           77 YLRTLFLNNNAPLRRIDS-GFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCL  153 (386)
Q Consensus        77 ~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L  153 (386)
                      +|+.|++++| .+..+++ ..++.+++|++|++++| .+..+ |..+..+++|++|++++|.++.++. .+..+++|+.|
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            4455555554 3443332 12445555555555555 44443 4445555555555555555554432 24455566666


Q ss_pred             EccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192          154 NLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       154 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      ++++|.. ..++...+..+++|+.|++++|.+..
T Consensus       108 ~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          108 NLYDNQI-SCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             ECCSSCC-CEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ECCCCcC-CeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            6666532 33322235556666666666665543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.34  E-value=7.1e-12  Score=104.74  Aligned_cols=129  Identities=24%  Similarity=0.289  Sum_probs=108.6

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC---CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE---VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS  109 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  109 (386)
                      ...+++.+.++.++|..  ++.++++|++++|.+..++.   ...+++|++|++++| .+..+.+..+..+++|++|+++
T Consensus        10 ~~~l~~s~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRD--IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSC--CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCCcCcCccC--CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECC
Confidence            35788999999999862  22389999999999999765   378999999999999 7777766668999999999999


Q ss_pred             CCccccccc-hhhcCCCccCEEEcCCCCCCcc-cHhhhccCCCCEEEccCCccccccc
Q 040192          110 GAIRLYSFP-LGISKLISLQHLDLSNTGIAEL-PKELNALVNLTCLNLEETWRLTVIP  165 (386)
Q Consensus       110 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~  165 (386)
                      +| .+..++ ..+..+++|++|++++|.++.+ |..+..+++|+.|++++|+...+.+
T Consensus        87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           87 EN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99 888764 5588999999999999999966 5678899999999999996654443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.34  E-value=4.6e-13  Score=134.43  Aligned_cols=110  Identities=25%  Similarity=0.334  Sum_probs=68.8

Q ss_pred             CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCE
Q 040192           73 PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTC  152 (386)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~  152 (386)
                      ..++.|+.|++++| .+..++..+ ..+++|++|++++| .+..+|..++.+++|++|++++|.++.+|..++.+++|++
T Consensus       221 ~~l~~L~~L~Ls~n-~l~~l~~~~-~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          221 YDDQLWHALDLSNL-QIFNISANI-FKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY  297 (727)
T ss_dssp             -CCCCCCEEECTTS-CCSCCCGGG-GGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred             ccCCCCcEEECCCC-CCCCCChhh-cCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence            45566666666666 555566553 35666666666666 5666666666666666666666666666666666666666


Q ss_pred             EEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192          153 LNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       153 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      |++++| .++.+|.. ++.+++|+.|++++|.+.+
T Consensus       298 L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          298 FYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             EECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred             EECCCC-CCCccChh-hhcCCCccEEeCCCCccCC
Confidence            666666 44566655 6666666666666665554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.32  E-value=1.8e-11  Score=100.84  Aligned_cols=129  Identities=23%  Similarity=0.354  Sum_probs=108.7

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+.+.+.++..+|.. ..+ ++++|++++|.+..++..  ..+++|++|++++| .+..+++..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~-~~~-~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTG-IPS-SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTT-CCT-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCC-CCC-CCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence            45678888888888742 234 899999999999987654  78999999999999 88888887788999999999999


Q ss_pred             Cccccccch-hhcCCCccCEEEcCCCCCCcccHh-hhccCCCCEEEccCCccccccc
Q 040192          111 AIRLYSFPL-GISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIP  165 (386)
Q Consensus       111 ~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~  165 (386)
                      | .+..++. .+..+++|++|++++|.++.+|.. +..+++|+.|++++|+.....+
T Consensus        86 N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 N-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             C-CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9 8887764 468899999999999999988865 4779999999999996655443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.31  E-value=4.6e-12  Score=115.28  Aligned_cols=98  Identities=12%  Similarity=0.033  Sum_probs=54.9

Q ss_pred             ccCcccEEEecCCCCCCcccc--ccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccc-eeeeccccccccccC-
Q 040192          250 VFHSLKKFQISYCKELKDLTF--LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFH-FLCFSYLPNLKSIYR-  325 (386)
Q Consensus       250 ~~~~L~~L~l~~~~~l~~~~~--l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~-  325 (386)
                      .+++|+.|++.+| .++.++.  +..+++|+.+++.+.  ++.+..       ..+.++++|+ .+++.+  .++.+.. 
T Consensus       224 ~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-------~aF~~~~~L~~~l~l~~--~l~~I~~~  291 (329)
T 3sb4_A          224 YMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-------RVFSNCGRLAGTLELPA--SVTAIEFG  291 (329)
T ss_dssp             HCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECT-------TTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred             hcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehH-------HHhhCChhccEEEEEcc--cceEEchh
Confidence            3566666666665 3554432  455666666666652  555544       3666666666 666665  4555432 


Q ss_pred             CCcCCCCccEEeecCcccCcCCCCCcccccCcceE
Q 040192          326 KPLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIV  360 (386)
Q Consensus       326 ~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~i  360 (386)
                      ....|++|+.+++.+ .+++.++.+......+++.
T Consensus       292 aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          292 AFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             TTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCE
T ss_pred             hhhCCccCCEEEeCC-CccCccchhhhcCCcchhh
Confidence            344566666666654 4566665554443333333

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.30  E-value=4.7e-12  Score=127.08  Aligned_cols=135  Identities=23%  Similarity=0.258  Sum_probs=96.5

Q ss_pred             ccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCcc
Q 040192           49 VRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISL  127 (386)
Q Consensus        49 ~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  127 (386)
                      +..+. .|+.|++++|.+..++.. ..+++|++|++++| .+..+|.. ++.+++|++|++++| .+..+|..++.+++|
T Consensus       220 ~~~l~-~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          220 KYDDQ-LWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQL  295 (727)
T ss_dssp             --CCC-CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTC
T ss_pred             hccCC-CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCC
Confidence            44555 788888888888777655 67888888888888 66677766 678888888888888 777778778888888


Q ss_pred             CEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCC-CCcEEEEeccCCccc
Q 040192          128 QHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS-SLHVLRIFGSGYSYS  188 (386)
Q Consensus       128 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~  188 (386)
                      ++|++++|.++.+|..++.+++|+.|++++|.....+|.. +..+. .+..+++++|.+...
T Consensus       296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~~  356 (727)
T 4b8c_D          296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEIP  356 (727)
T ss_dssp             SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCCC
T ss_pred             CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcccCc
Confidence            8888888888888877888888888888888554445543 43322 122355666655543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.29  E-value=2.7e-11  Score=110.22  Aligned_cols=276  Identities=13%  Similarity=0.063  Sum_probs=168.2

Q ss_pred             ccEEEEcCCCC-CCCCcccc-cccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcC--------CC
Q 040192           33 EEHLVYAGAGL-SETPDVRK-WEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQS--------MP  101 (386)
Q Consensus        33 ~~~l~~~~~~l-~~~p~~~~-~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~--------l~  101 (386)
                      ...+.+.|.-. .++..+.. ++ +|+.|++++|.+..+... ..++.++.+.+..+    .++..+|.+        |+
T Consensus        27 l~~L~l~g~i~~~~~~~l~~~l~-~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~  101 (329)
T 3sb4_A           27 ITHLTLTGKLNAEDFRHLRDEFP-SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQ  101 (329)
T ss_dssp             CSEEEEEEEECHHHHHHHHHSCT-TCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEECT
T ss_pred             eeEEEEeccccHHHHHHHHHhhc-cCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccccccC
Confidence            45566654311 11222334 55 899999999998832222 33444455554443    566666778        99


Q ss_pred             cCceecccCCcccccc-chhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCc---cccccchhhhcCCCCCc
Q 040192          102 RLNVLNLSGAIRLYSF-PLGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETW---RLTVIPRRLISSFSSLH  176 (386)
Q Consensus       102 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~---~~~~~~~~~l~~l~~L~  176 (386)
                      +|+.+.+..  .+..+ ..+|..|++|+.++++.+.+..++. .+..+.++..+......   ....+...++..+..|+
T Consensus       102 ~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~  179 (329)
T 3sb4_A          102 TLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE  179 (329)
T ss_dssp             TCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred             CCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence            999999876  45655 4578889999999999998876653 45566666666654421   11223333355666666


Q ss_pred             -EEEEeccCCccc---cCCCcCcccccccceeecCCccccccc-cccCCcEEEeeccCCccchhcccccccccCcccccc
Q 040192          177 -VLRIFGSGYSYS---DGMIGNGEFEQLCGFRRSKSLDVSALA-DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVF  251 (386)
Q Consensus       177 -~L~l~~~~~~~~---~~~~~l~~L~~L~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (386)
                       .+.+........   .......++..+...-.........+. .+++|+.+++.+|+.. .++...+.         .+
T Consensus       180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~---------~~  249 (329)
T 3sb4_A          180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFA---------QK  249 (329)
T ss_dssp             EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTT---------TC
T ss_pred             eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhh---------CC
Confidence             444432211110   000111222211100000001111122 3789999999988644 36666665         79


Q ss_pred             CcccEEEecCCCCCCccc--cccCCCCCc-EEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccC-CC
Q 040192          252 HSLKKFQISYCKELKDLT--FLIFAPNLK-SIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYR-KP  327 (386)
Q Consensus       252 ~~L~~L~l~~~~~l~~~~--~l~~l~~L~-~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~  327 (386)
                      .+|+.|.+.++  ++.++  .+..+++|+ .+++.+  .++.+..       ..+.++++|+++++.+. .+..++. ..
T Consensus       250 ~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-------~aF~~c~~L~~l~l~~n-~i~~I~~~aF  317 (329)
T 3sb4_A          250 KYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-------GAFMGCDNLRYVLATGD-KITTLGDELF  317 (329)
T ss_dssp             TTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-------TTTTTCTTEEEEEECSS-CCCEECTTTT
T ss_pred             CCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-------hhhhCCccCCEEEeCCC-ccCccchhhh
Confidence            99999999986  66654  367889999 999987  4777766       48999999999999877 6777764 35


Q ss_pred             cCCCCccEEe
Q 040192          328 LPFPHLKEMK  337 (386)
Q Consensus       328 ~~~~~L~~L~  337 (386)
                      ..+++|+.+.
T Consensus       318 ~~~~~L~~ly  327 (329)
T 3sb4_A          318 GNGVPSKLIY  327 (329)
T ss_dssp             CTTCCCCEEE
T ss_pred             cCCcchhhhc
Confidence            5677777764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.27  E-value=5e-10  Score=104.35  Aligned_cols=262  Identities=16%  Similarity=0.111  Sum_probs=178.4

Q ss_pred             CccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEE
Q 040192           55 NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLD  131 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~  131 (386)
                      .++.+.+.+ .+..++..  ..+ +|+.+.+..+  +..++..+|.++ .|+.+.+..  .+..+ ..+|..|++|+.++
T Consensus       114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEE
T ss_pred             CccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeee
Confidence            455555543 23333333  344 6888888764  667777767775 588888764  45555 45778888889999


Q ss_pred             cCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccc
Q 040192          132 LSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDV  211 (386)
Q Consensus       132 l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~  211 (386)
                      ++.+.++.++.....+.+|+.+.+..+  +..++..++..+.+|+.+.+..+ +...+                     .
T Consensus       187 l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~---------------------~  242 (401)
T 4fdw_A          187 LSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIG---------------------Q  242 (401)
T ss_dssp             CTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEEC---------------------T
T ss_pred             cCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcc---------------------c
Confidence            888888888765555788888888754  67777777888888888888764 22221                     1


Q ss_pred             cccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCC----Ccc--ccccCCCCCcEEeecCC
Q 040192          212 SALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKEL----KDL--TFLIFAPNLKSIEVDSC  285 (386)
Q Consensus       212 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l----~~~--~~l~~l~~L~~L~l~~c  285 (386)
                      ..+.. .+|+.+.+..+  +..+....+.         .|++|+.+.+.++...    +.+  ..+..|++|+.+.|.+ 
T Consensus       243 ~aF~~-~~L~~i~lp~~--i~~I~~~aF~---------~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-  309 (401)
T 4fdw_A          243 EAFRE-SGITTVKLPNG--VTNIASRAFY---------YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-  309 (401)
T ss_dssp             TTTTT-CCCSEEEEETT--CCEECTTTTT---------TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred             ccccc-CCccEEEeCCC--ccEEChhHhh---------CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence            22333 57888888543  3334555555         7899999999887321    122  2356789999999984 


Q ss_pred             CccchhhccCcccccCCCCcccccceeeeccccccccccC-CCcCCCCccEEeecCcccCcCCCCCccccc-CcceEEEc
Q 040192          286 YALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYR-KPLPFPHLKEMKVIHCLKLKKLPLDSNRAK-ERKIVIRG  363 (386)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~-~~l~i~~~  363 (386)
                       .++.+..       ..+.++++|+.+.|...  +..+.. ....+ +|+.+.+.+ ..+..++.+..... ..+..++.
T Consensus       310 -~i~~I~~-------~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~v  377 (401)
T 4fdw_A          310 -SIRILGQ-------GLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRV  377 (401)
T ss_dssp             -TCCEECT-------TTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEE
T ss_pred             -ceEEEhh-------hhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEe
Confidence             3777766       48889999999999654  666643 35567 999999988 46777766654443 67788888


Q ss_pred             hHHHHhhhh
Q 040192          364 SRERWEQLQ  372 (386)
Q Consensus       364 ~~~~~~~~~  372 (386)
                      |.+..+.++
T Consensus       378 p~~~~~~y~  386 (401)
T 4fdw_A          378 PAESVEKYK  386 (401)
T ss_dssp             CGGGHHHHH
T ss_pred             CHHHHHHhh
Confidence            877766653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.27  E-value=2.1e-11  Score=118.72  Aligned_cols=105  Identities=23%  Similarity=0.301  Sum_probs=86.8

Q ss_pred             CCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEcc
Q 040192           77 YLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLE  156 (386)
Q Consensus        77 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~  156 (386)
                      .|+.|++++| .+..+|.  ++.+++|++|++++| .+..+|..++.+++|+.|++++|.++.+| .++.+++|+.|+++
T Consensus       442 ~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCC-CCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence            5888888888 7777775  788888999999888 78888888888889999999998888887 78888889999998


Q ss_pred             CCcccccc--chhhhcCCCCCcEEEEeccCCccc
Q 040192          157 ETWRLTVI--PRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       157 ~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      +| .+..+  |.. ++.+++|+.|++++|.+.+.
T Consensus       517 ~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          517 NN-RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             SS-CCCSSSTTGG-GGGCTTCCEEECTTSGGGGS
T ss_pred             CC-CCCCCCCcHH-HhcCCCCCEEEecCCcCCCC
Confidence            88 44555  554 88888999999988888765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.21  E-value=8.9e-13  Score=110.85  Aligned_cols=139  Identities=24%  Similarity=0.286  Sum_probs=96.2

Q ss_pred             CCCCCC-cccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchh
Q 040192           42 GLSETP-DVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLG  120 (386)
Q Consensus        42 ~l~~~p-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  120 (386)
                      .+..+| .+..++ +|++|++++|.+..+|....+++|+.|++++| .+..++.. +..+++|++|++++| .+..+| .
T Consensus        36 ~l~~l~~~~~~l~-~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~-~  110 (198)
T 1ds9_A           36 PIEKMDATLSTLK-ACKHLALSTNNIEKISSLSGMENLRILSLGRN-LIKKIENL-DAVADTLEELWISYN-QIASLS-G  110 (198)
T ss_dssp             TCCCCHHHHHHTT-TCSEEECSEEEESCCCCHHHHTTCCEEEEEEE-EECSCSSH-HHHHHHCSEEEEEEE-ECCCHH-H
T ss_pred             cHhhhhHHHhcCC-CCCEEECCCCCCccccccccCCCCCEEECCCC-Ccccccch-hhcCCcCCEEECcCC-cCCcCC-c
Confidence            344444 366677 78888888888877775577788888888887 66666654 566778888888887 777665 5


Q ss_pred             hcCCCccCEEEcCCCCCCcccH--hhhccCCCCEEEccCCccccccc---------hhhhcCCCCCcEEEEeccCCcc
Q 040192          121 ISKLISLQHLDLSNTGIAELPK--ELNALVNLTCLNLEETWRLTVIP---------RRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       121 ~~~l~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~---------~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                      +..+++|++|++++|.++.++.  .+..+++|+.|++++|+.....|         ..++..+++|+.|+  ++.+..
T Consensus       111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            6777888888888888776653  56777888888888875433322         22366777888776  444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.14  E-value=2.7e-12  Score=107.91  Aligned_cols=15  Identities=13%  Similarity=0.127  Sum_probs=7.0

Q ss_pred             ccCCCCCcEEeecCC
Q 040192          271 LIFAPNLKSIEVDSC  285 (386)
Q Consensus       271 l~~l~~L~~L~l~~c  285 (386)
                      +..+++|+.|++++|
T Consensus       136 l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          136 LAALDKLEDLLLAGN  150 (198)
T ss_dssp             HTTTTTCSEEEECSC
T ss_pred             HhcCCCCCEEEecCC
Confidence            344444455555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.14  E-value=4.3e-09  Score=98.02  Aligned_cols=216  Identities=12%  Similarity=0.153  Sum_probs=158.9

Q ss_pred             CccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEc
Q 040192           55 NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDL  132 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  132 (386)
                      +|+.+.+..+ +..+...  .. .+|+.+.+..  .+..++...|.+|++|+.+++..+ .+..++...-.+.+|+.+.+
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l  210 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL  210 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC
T ss_pred             CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe
Confidence            7888888766 5555544  44 4799999986  577888888999999999999988 88887654334689999999


Q ss_pred             CCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccc
Q 040192          133 SNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDV  211 (386)
Q Consensus       133 ~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~  211 (386)
                      ..+ +..++ ..+..|++|+.+.+..+  +..++..++.. ++|+.+.+..+ +...                     ..
T Consensus       211 p~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~~I---------------------~~  264 (401)
T 4fdw_A          211 PVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VTNI---------------------AS  264 (401)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CCEE---------------------CT
T ss_pred             CCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-ccEE---------------------Ch
Confidence            854 66665 45778999999999875  57778776777 78999999543 3322                     12


Q ss_pred             cccccccCCcEEEeeccCCc----cchhcccccccccCccccccCcccEEEecCCCCCCccc--cccCCCCCcEEeecCC
Q 040192          212 SALADLKRLNRLKIAECYGL----AELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT--FLIFAPNLKSIEVDSC  285 (386)
Q Consensus       212 ~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~c  285 (386)
                      ..+..+++|+.+.+.++...    ..+....+.         .|++|+.+.+.+  .++.+.  .+..+++|+.+.|.. 
T Consensus       265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~---------~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~-  332 (401)
T 4fdw_A          265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE---------GCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA-  332 (401)
T ss_dssp             TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT---------TCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT-
T ss_pred             hHhhCCCCCCEEEeCCccccCCcccEECHHHhh---------CCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc-
Confidence            34667889999999876443    123444444         789999999985  466653  356789999999965 


Q ss_pred             CccchhhccCcccccCCCCcccccceeeeccccccccc
Q 040192          286 YALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSI  323 (386)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  323 (386)
                       .++.+..       ..+..+ +|+.+.+.++ .+..+
T Consensus       333 -~l~~I~~-------~aF~~~-~L~~l~l~~n-~~~~l  360 (401)
T 4fdw_A          333 -NVTQINF-------SAFNNT-GIKEVKVEGT-TPPQV  360 (401)
T ss_dssp             -TCCEECT-------TSSSSS-CCCEEEECCS-SCCBC
T ss_pred             -cccEEcH-------HhCCCC-CCCEEEEcCC-CCccc
Confidence             3677655       477888 9999999987 44444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.10  E-value=5.6e-10  Score=91.18  Aligned_cols=56  Identities=30%  Similarity=0.415  Sum_probs=21.1

Q ss_pred             CccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192           55 NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA  111 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  111 (386)
                      +++.|++++|.+..++..  ..+++|+.|++++| .+..+++..+..+++|++|++++|
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence            344444444444433221  33334444444433 333333333333333333333333

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.09  E-value=5.9e-10  Score=91.40  Aligned_cols=56  Identities=32%  Similarity=0.486  Sum_probs=22.0

Q ss_pred             CccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192           55 NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA  111 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  111 (386)
                      +++.|++++|.+..++..  ..+++|+.|++++| .+..++...+..+++|++|++++|
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence            344444444444443221  33444444444444 333333333333444444444433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.09  E-value=6e-10  Score=91.33  Aligned_cols=103  Identities=22%  Similarity=0.379  Sum_probs=88.3

Q ss_pred             ccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchh-hcCCCccCEEEcCC
Q 040192           56 VRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLG-ISKLISLQHLDLSN  134 (386)
Q Consensus        56 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~  134 (386)
                      -+.++++++.+..+|... .++|+.|++++| .+..+++..+..+++|++|++++| .+..+|.. +..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI-PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCc-CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence            357788888887777642 389999999999 788887766899999999999999 89988754 68999999999999


Q ss_pred             CCCCcccHh-hhccCCCCEEEccCCccc
Q 040192          135 TGIAELPKE-LNALVNLTCLNLEETWRL  161 (386)
Q Consensus       135 ~~i~~l~~~-~~~l~~L~~L~l~~~~~~  161 (386)
                      |.++.+|.. +..+++|+.|++++|+..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            999998865 889999999999999543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.05  E-value=1.2e-09  Score=89.18  Aligned_cols=104  Identities=19%  Similarity=0.336  Sum_probs=89.3

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccch-hhcCCCccCEEEcC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPL-GISKLISLQHLDLS  133 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~  133 (386)
                      ..+.++++++.+..+|... .++|+.|++++| .+..+++..+..+++|++|++++| .+..++. .+..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccC-CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence            3567888888888877643 489999999999 888887776899999999999999 8888865 46899999999999


Q ss_pred             CCCCCcccH-hhhccCCCCEEEccCCccc
Q 040192          134 NTGIAELPK-ELNALVNLTCLNLEETWRL  161 (386)
Q Consensus       134 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~  161 (386)
                      +|.++.++. .+..+++|+.|++++|+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            999998886 4789999999999999654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.79  E-value=1.9e-08  Score=91.95  Aligned_cols=102  Identities=26%  Similarity=0.256  Sum_probs=73.1

Q ss_pred             cEEEEcCC-CCCCCCcccccccCccEEEecC-CcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192           34 EHLVYAGA-GLSETPDVRKWEKNVRRLSLME-NQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS  109 (386)
Q Consensus        34 ~~l~~~~~-~l~~~p~~~~~~~~L~~L~l~~-~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  109 (386)
                      ..+.+.+. ++..+|.+..+. +|+.|++++ |.+..++..  ..+++|+.|++++| .+..+++..|..+++|++|+|+
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCCCCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCC
Confidence            34677777 788887766666 788888885 788776643  67888888888887 6777766667788888888888


Q ss_pred             CCccccccchhhcCCCccCEEEcCCCCCC
Q 040192          110 GAIRLYSFPLGISKLISLQHLDLSNTGIA  138 (386)
Q Consensus       110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  138 (386)
                      +| .+..+|........|+.|++.+|.+.
T Consensus        89 ~N-~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FN-ALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SS-CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CC-ccceeCHHHcccCCceEEEeeCCCcc
Confidence            87 77776544333223788888877765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.76  E-value=2.8e-08  Score=90.83  Aligned_cols=103  Identities=18%  Similarity=0.217  Sum_probs=87.9

Q ss_pred             cEEEecCC-cccccCCCCCCCCCcEEeccc-CcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcC
Q 040192           57 RRLSLMEN-QIENLSEVPTCPYLRTLFLNN-NAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLS  133 (386)
Q Consensus        57 ~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~  133 (386)
                      ..++.+++ .+..+|....+++|+.|++++ | .+..+++..|+.+++|++|+|++| .+..+ |..|..+++|+.|+++
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCC
Confidence            35678887 898888888889999999996 7 888888777999999999999999 88877 4578999999999999


Q ss_pred             CCCCCcccHhhhccCCCCEEEccCCccc
Q 040192          134 NTGIAELPKELNALVNLTCLNLEETWRL  161 (386)
Q Consensus       134 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~  161 (386)
                      +|.++.+|..+.....|+.|++.+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCcc
Confidence            9999999866554445999999998543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.75  E-value=1.8e-09  Score=99.51  Aligned_cols=157  Identities=18%  Similarity=0.086  Sum_probs=89.7

Q ss_pred             CccEEEecCCcccccC--CC-----CCCCCCcEEecccCcCCCcCC-hhhhcCCCcCceecccCCcccccc-ch----hh
Q 040192           55 NVRRLSLMENQIENLS--EV-----PTCPYLRTLFLNNNAPLRRID-SGFFQSMPRLNVLNLSGAIRLYSF-PL----GI  121 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~--~~-----~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~----~~  121 (386)
                      ++++|++++|.+....  ..     ...++|+.|++++| .+++.. ..+...+++|++|++++| .++.. ..    .+
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L  150 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL  150 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence            6777888877776521  11     23467778888777 444322 222334567777777777 66532 11    22


Q ss_pred             -cCCCccCEEEcCCCCCCc-----ccHhhhccCCCCEEEccCCccccccc----hhhhcCCCCCcEEEEeccCCccccCC
Q 040192          122 -SKLISLQHLDLSNTGIAE-----LPKELNALVNLTCLNLEETWRLTVIP----RRLISSFSSLHVLRIFGSGYSYSDGM  191 (386)
Q Consensus       122 -~~l~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~  191 (386)
                       ...++|+.|++++|.++.     ++..+..+++|++|++++|. +++..    ...+...++|+.|++++|.+.+.+..
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence             235677777777777652     33445567777777777774 33321    11255666777777777766554100


Q ss_pred             CcCcccccccceeecCCccccccccccCCcEEEeeccCCc
Q 040192          192 IGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGL  231 (386)
Q Consensus       192 ~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  231 (386)
                      .                 ....+...++|++|++++|...
T Consensus       230 ~-----------------l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          230 A-----------------LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             H-----------------HHHHHHHCSSCCEEECTTSSCC
T ss_pred             H-----------------HHHHHHhCCCCCEEeccCCCCC
Confidence            0                 0122334566777777777543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.74  E-value=4.3e-07  Score=84.48  Aligned_cols=79  Identities=9%  Similarity=0.056  Sum_probs=43.6

Q ss_pred             CCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccC-CCcCCCCccEEeecCcccCcCCCCCc
Q 040192          273 FAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYR-KPLPFPHLKEMKVIHCLKLKKLPLDS  351 (386)
Q Consensus       273 ~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~~~  351 (386)
                      .+.+|+.+.+.+  .++.+..       ..+..+.+|+.++|..  .++.+.. ....|.+|+.+.+..  +++.++...
T Consensus       295 ~~~~L~~i~l~~--~i~~I~~-------~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~a  361 (394)
T 4fs7_A          295 GCSSLTEVKLLD--SVKFIGE-------EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANA  361 (394)
T ss_dssp             TCTTCCEEEECT--TCCEECT-------TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTT
T ss_pred             cccccccccccc--ccceech-------hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHH
Confidence            456666666653  2444444       3666677777777743  2444432 344567777777643  366665554


Q ss_pred             ccccCcceEEEch
Q 040192          352 NRAKERKIVIRGS  364 (386)
Q Consensus       352 ~~~~~~l~i~~~~  364 (386)
                      ...-..|+.+..|
T Consensus       362 F~~C~~L~~i~lp  374 (394)
T 4fs7_A          362 FQGCINLKKVELP  374 (394)
T ss_dssp             BTTCTTCCEEEEE
T ss_pred             hhCCCCCCEEEEC
Confidence            4333455555555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.73  E-value=6.3e-09  Score=84.19  Aligned_cols=39  Identities=13%  Similarity=-0.040  Sum_probs=16.8

Q ss_pred             ccceeeeccccccccccC-CCcCCCCccEEeecCcccCcC
Q 040192          308 QFHFLCFSYLPNLKSIYR-KPLPFPHLKEMKVIHCLKLKK  346 (386)
Q Consensus       308 ~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~  346 (386)
                      +|++|+|++|+.+++-.. ....+++|+.|+|++|+.++.
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            444555544444443111 122345555555555554443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.69  E-value=1.6e-08  Score=81.78  Aligned_cols=72  Identities=17%  Similarity=0.298  Sum_probs=36.4

Q ss_pred             ccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCc--cccccCCCCCcEEeecCCCccchh
Q 040192          215 ADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKD--LTFLIFAPNLKSIEVDSCYALEEI  291 (386)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~l~~l~~L~~L~l~~c~~~~~~  291 (386)
                      ..+++|++|++++|..+++.....++... .    .+++|++|+|++|..+++  +..+..+++|++|+|++|+.+++.
T Consensus        82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~-~----~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A           82 EGLQYVEKIRLCKCHYIEDGCLERLSQLE-N----LQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             TTCSCCCEEEEESCTTCCHHHHHHHHTCH-H----HHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred             cCCCCCCEEEeCCCCccCHHHHHHHHhcc-c----ccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence            34556666666666555544444332100 0    023566666666655555  333445566666666666555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.66  E-value=8.6e-09  Score=95.04  Aligned_cols=153  Identities=22%  Similarity=0.241  Sum_probs=112.4

Q ss_pred             cccEEEEcCCCCCCCC--ccccc-----ccCccEEEecCCcccc--cCCC-CCCCCCcEEecccCcCCCcCChhhh----
Q 040192           32 KEEHLVYAGAGLSETP--DVRKW-----EKNVRRLSLMENQIEN--LSEV-PTCPYLRTLFLNNNAPLRRIDSGFF----   97 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p--~~~~~-----~~~L~~L~l~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~----   97 (386)
                      ....+.+.+..+....  .+...     . +|++|++++|.+.+  +... ..+++|+.|++++| .+++.....+    
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L  150 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRH-ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL  150 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSS-CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCC-CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence            3567888887776432  12222     4 89999999999876  3333 56789999999999 6765443322    


Q ss_pred             -cCCCcCceecccCCccccc-----cchhhcCCCccCEEEcCCCCCCc-----ccHhhhccCCCCEEEccCCccccccch
Q 040192           98 -QSMPRLNVLNLSGAIRLYS-----FPLGISKLISLQHLDLSNTGIAE-----LPKELNALVNLTCLNLEETWRLTVIPR  166 (386)
Q Consensus        98 -~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~  166 (386)
                       ...+.|++|++++| .++.     ++..+..+++|++|++++|.++.     +...+...++|+.|++++|. +++...
T Consensus       151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~  228 (372)
T 3un9_A          151 LHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA  228 (372)
T ss_dssp             HSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH
T ss_pred             HhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH
Confidence             35789999999999 7764     45556788999999999999863     34566778899999999994 443221


Q ss_pred             ----hhhcCCCCCcEEEEeccCCccc
Q 040192          167 ----RLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       167 ----~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                          .++...++|++|++++|.+...
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCCHH
Confidence                1256779999999999988765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.60  E-value=1.2e-07  Score=86.81  Aligned_cols=111  Identities=14%  Similarity=0.043  Sum_probs=55.5

Q ss_pred             ccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCC-------CCCcccc-c--cCCCCCcEEeecCCC
Q 040192          217 LKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCK-------ELKDLTF-L--IFAPNLKSIEVDSCY  286 (386)
Q Consensus       217 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~~~~-l--~~l~~L~~L~l~~c~  286 (386)
                      +++|++|.+..|....+ ....+.   ..    .+|+|++|+|+.+.       .+..+.. +  ..+|+|++|++.+|.
T Consensus       192 ~~~L~~L~L~~~~l~~~-~l~~l~---~~----~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDS-VVEDIL---GS----DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             CTTCSEEEEECSBCCHH-HHHHHH---HS----BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             CCCCcEEEEecCCCChH-HHHHHH---Hc----cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            45677777766543322 111111   00    46777777764311       1111211 1  246777777777765


Q ss_pred             ccchhhccCcccccCCCCcccccceeeecccccccc-----ccCCCcCCCCccEEeecCc
Q 040192          287 ALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKS-----IYRKPLPFPHLKEMKVIHC  341 (386)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~i~~c  341 (386)
                      .........     .....+|+|++|+|+.+ .+.+     +......+++|+.|++++|
T Consensus       264 i~~~~~~~l-----a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          264 EQNVVVEMF-----LESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             THHHHHHHH-----HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CchHHHHHH-----HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence            332211100     11235677777777766 4443     2323345677777777765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.59  E-value=3.8e-06  Score=78.04  Aligned_cols=121  Identities=12%  Similarity=0.234  Sum_probs=75.4

Q ss_pred             CccEEEecCCcccccCCC--CCCCCCcEEecccCc--CCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCE
Q 040192           55 NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNA--PLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQH  129 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~  129 (386)
                      .|+.+.+... ++.+...  ..|.+|+.+.+..+.  .+..++..+|..|..|+.+.+..+  +..+ ..++..+.+|+.
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~  141 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDT  141 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCE
T ss_pred             cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccc
Confidence            4788887643 5554433  778899998887651  356677777888888888876543  4444 346677888888


Q ss_pred             EEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEec
Q 040192          130 LDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFG  182 (386)
Q Consensus       130 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  182 (386)
                      +.+..+ +..+. ..+..+.+|+.+.+..+  +..+...++. ...|+.+.+..
T Consensus       142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~  191 (394)
T 4gt6_A          142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPA  191 (394)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECT
T ss_pred             ccccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECC
Confidence            887643 23232 34556777777777554  3444444343 34566666544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.52  E-value=2.3e-06  Score=79.45  Aligned_cols=105  Identities=15%  Similarity=0.272  Sum_probs=76.2

Q ss_pred             CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcCCCCCCcccHhhhccCCCC
Q 040192           73 PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLSNTGIAELPKELNALVNLT  151 (386)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~  151 (386)
                      ..|++|+.+.+..+  ...++..+|.++.+|+.+.+..+  +..+ ..++.++..|+.+.+..+.. .+........+|+
T Consensus       159 ~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~  233 (394)
T 4fs7_A          159 ATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGVK  233 (394)
T ss_dssp             TTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCC
T ss_pred             cccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce-EeehhhcccCCCc
Confidence            78899999999764  46677777999999999998764  4444 45678888888887765432 2233344567888


Q ss_pred             EEEccCCccccccchhhhcCCCCCcEEEEeccC
Q 040192          152 CLNLEETWRLTVIPRRLISSFSSLHVLRIFGSG  184 (386)
Q Consensus       152 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  184 (386)
                      .+.+...  ...+...++..+..|+.+.+..+.
T Consensus       234 ~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~  264 (394)
T 4fs7_A          234 NIIIPDS--FTELGKSVFYGCTDLESISIQNNK  264 (394)
T ss_dssp             EEEECTT--CCEECSSTTTTCSSCCEEEECCTT
T ss_pred             eEEECCC--ceecccccccccccceeEEcCCCc
Confidence            8888654  355666668889999999887653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.48  E-value=2.1e-05  Score=72.96  Aligned_cols=77  Identities=14%  Similarity=0.208  Sum_probs=34.1

Q ss_pred             ccCcccEEEecCCCCCCccc--cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccC-C
Q 040192          250 VFHSLKKFQISYCKELKDLT--FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYR-K  326 (386)
Q Consensus       250 ~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~  326 (386)
                      .+++|+.+.+..  .++.++  .+..+.+|+.+.|..  .++.+..       ..+.++.+|+.+.|..  .++.+.. .
T Consensus       286 ~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-------~aF~~C~~L~~i~ip~--sv~~I~~~a  352 (394)
T 4gt6_A          286 NCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILD-------DAFAGCEQLERIAIPS--SVTKIPESA  352 (394)
T ss_dssp             TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECT-------TTTTTCTTCCEEEECT--TCCBCCGGG
T ss_pred             cccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehH-------hHhhCCCCCCEEEECc--ccCEEhHhH
Confidence            345555555532  233322  133455555555543  1344333       2555555555555532  2333321 2


Q ss_pred             CcCCCCccEEeec
Q 040192          327 PLPFPHLKEMKVI  339 (386)
Q Consensus       327 ~~~~~~L~~L~i~  339 (386)
                      ...|.+|+.+++.
T Consensus       353 F~~C~~L~~i~~~  365 (394)
T 4gt6_A          353 FSNCTALNNIEYS  365 (394)
T ss_dssp             GTTCTTCCEEEES
T ss_pred             hhCCCCCCEEEEC
Confidence            3345555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.39  E-value=6.5e-07  Score=81.88  Aligned_cols=13  Identities=15%  Similarity=0.470  Sum_probs=7.2

Q ss_pred             cccccceeeeccc
Q 040192          305 PFAQFHFLCFSYL  317 (386)
Q Consensus       305 ~~~~L~~L~l~~~  317 (386)
                      .+++|+.|++++|
T Consensus       305 ~l~~L~~L~L~~n  317 (362)
T 2ra8_A          305 KIKHLKFINMKYN  317 (362)
T ss_dssp             HHTTCSEEECCSB
T ss_pred             cCCcceEEECCCC
Confidence            4455555555555

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.34  E-value=5.8e-05  Score=69.51  Aligned_cols=125  Identities=12%  Similarity=0.220  Sum_probs=72.5

Q ss_pred             CcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc-hhhcC
Q 040192           47 PDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP-LGISK  123 (386)
Q Consensus        47 p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~  123 (386)
                      |.+.... +++.+.+.. .++.+...  ..|.+|+.+.+..  .+..++..+|.++ .|+.+.+-.  .+..+. .+|..
T Consensus        40 ~~~~~~~-~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~  112 (379)
T 4h09_A           40 PWYKDRD-RISEVRVNS-GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQG  112 (379)
T ss_dssp             TTGGGGG-GCSEEEECT-TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTT
T ss_pred             ccccccc-CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc--eeeEeccceecc
Confidence            4444445 788888864 35555444  7889999999875  4677777778877 466665543  344443 34444


Q ss_pred             CCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEec
Q 040192          124 LISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFG  182 (386)
Q Consensus       124 l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  182 (386)
                       .+|+.+.+..+ +..+........+++.+.+..+  +..+...++..+.+++.+.+..
T Consensus       113 -~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~  167 (379)
T 4h09_A          113 -TDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSS  167 (379)
T ss_dssp             -CCCSEEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECT
T ss_pred             -CCcccccCCCc-cccccccccccceeeeeeccce--eeccccchhccccccccccccc
Confidence             36888888654 2322222222234555555433  3444444466666666666544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.94  E-value=6.9e-06  Score=67.61  Aligned_cols=88  Identities=13%  Similarity=0.099  Sum_probs=45.7

Q ss_pred             cCCCcCceecccCCccccc-----cchhhcCCCccCEEEcCCCCCCc-----ccHhhhccCCCCEEEc--cCCccccc--
Q 040192           98 QSMPRLNVLNLSGAIRLYS-----FPLGISKLISLQHLDLSNTGIAE-----LPKELNALVNLTCLNL--EETWRLTV--  163 (386)
Q Consensus        98 ~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l--~~~~~~~~--  163 (386)
                      ...+.|++|++++| .++.     +...+...++|++|++++|.++.     +...+...++|++|++  ++|..-..  
T Consensus        62 ~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~  140 (185)
T 1io0_A           62 KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  140 (185)
T ss_dssp             TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence            34455555655555 4432     22333444566666666666652     2344455566666666  55532211  


Q ss_pred             --cchhhhcCCCCCcEEEEeccCCcc
Q 040192          164 --IPRRLISSFSSLHVLRIFGSGYSY  187 (386)
Q Consensus       164 --~~~~~l~~l~~L~~L~l~~~~~~~  187 (386)
                        +.. ++...++|++|++++|.+..
T Consensus       141 ~~l~~-~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          141 MEIAN-MLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHH-HHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHH-HHHhCCCcCEEeccCCCCCh
Confidence              112 24455667777776665543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.94  E-value=1.2e-05  Score=66.07  Aligned_cols=108  Identities=13%  Similarity=0.131  Sum_probs=81.0

Q ss_pred             ccccccCccEEEecCC-cccc--cCC----CCCCCCCcEEecccCcCCCcCC----hhhhcCCCcCceecccCCccccc-
Q 040192           49 VRKWEKNVRRLSLMEN-QIEN--LSE----VPTCPYLRTLFLNNNAPLRRID----SGFFQSMPRLNVLNLSGAIRLYS-  116 (386)
Q Consensus        49 ~~~~~~~L~~L~l~~~-~~~~--~~~----~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~-  116 (386)
                      +...+ ++++|++++| .+..  +..    ....++|++|++++| .+++..    ...+...+.|++|++++| .++. 
T Consensus        32 l~~~~-~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~  108 (185)
T 1io0_A           32 QNNDP-DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS  108 (185)
T ss_dssp             HTTCT-TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred             HhcCC-CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHH
Confidence            34455 8999999999 8875  221    266889999999999 666432    122456788999999999 7774 


Q ss_pred             ----cchhhcCCCccCEEEc--CCCCCCc-----ccHhhhccCCCCEEEccCCc
Q 040192          117 ----FPLGISKLISLQHLDL--SNTGIAE-----LPKELNALVNLTCLNLEETW  159 (386)
Q Consensus       117 ----~~~~~~~l~~L~~L~l--~~~~i~~-----l~~~~~~l~~L~~L~l~~~~  159 (386)
                          +...+...++|++|++  ++|.++.     +...+...++|+.|++++|.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence                3556677889999999  8898873     44556677899999999984

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.75  E-value=0.0038  Score=57.21  Aligned_cols=244  Identities=11%  Similarity=0.072  Sum_probs=137.7

Q ss_pred             CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcCCCCCCcccHhhhccCCC
Q 040192           72 VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLSNTGIAELPKELNALVNL  150 (386)
Q Consensus        72 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L  150 (386)
                      .....+|+.+.+..  .+..++..+|.+|.+|+.+.+..  .+..+ ..+|.++ +|..+.+.. .+..+........+|
T Consensus        42 ~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L  115 (379)
T 4h09_A           42 YKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDL  115 (379)
T ss_dssp             GGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCC
T ss_pred             cccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc-eeeEeccceeccCCc
Confidence            35667899999876  57888888899999999999964  35555 3566666 577777654 345554333334589


Q ss_pred             CEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc--cCCCcCcccccccc------ee-------ecCCccc----
Q 040192          151 TCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS--DGMIGNGEFEQLCG------FR-------RSKSLDV----  211 (386)
Q Consensus       151 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~~------~~-------~~~~~~~----  211 (386)
                      +.+.+..+  +..+...++..+ +|+.+.+..+ +...  ........++....      ..       .......    
T Consensus       116 ~~i~lp~~--~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (379)
T 4h09_A          116 DDFEFPGA--TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP  191 (379)
T ss_dssp             SEEECCTT--CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred             ccccCCCc--cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence            99998765  345555545544 6776666543 2211  12223333333220      00       0000001    


Q ss_pred             -------------------cccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc--c
Q 040192          212 -------------------SALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT--F  270 (386)
Q Consensus       212 -------------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~  270 (386)
                                         ..+..+.+|+.+.+...  ...+....+.         .+..|+.+.+..+  ++.+.  .
T Consensus       192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~---------~~~~L~~i~lp~~--v~~I~~~a  258 (379)
T 4h09_A          192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFY---------GMKALDEIAIPKN--VTSIGSFL  258 (379)
T ss_dssp             TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT--CCEECTTTTT---------TCSSCCEEEECTT--CCEECTTT
T ss_pred             ccccccccccccceeEEeecccccccccceeeeccc--eeEEcccccc---------CCccceEEEcCCC--ccEeCccc
Confidence                               11122334444444322  1111122222         4667777776553  44432  2


Q ss_pred             ccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccC-CCcCCCCccEEeecCcccCcCCCC
Q 040192          271 LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYR-KPLPFPHLKEMKVIHCLKLKKLPL  349 (386)
Q Consensus       271 l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~  349 (386)
                      ...+.+|+.+.+..  .++.+..       ..+..+++|+.+.+.+. .++.+.. ....|.+|+.+.|.+  +++.|..
T Consensus       259 F~~~~~l~~i~l~~--~i~~i~~-------~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~  326 (379)
T 4h09_A          259 LQNCTALKTLNFYA--KVKTVPY-------LLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQV  326 (379)
T ss_dssp             TTTCTTCCEEEECC--CCSEECT-------TTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECT
T ss_pred             cceeehhccccccc--cceeccc-------ccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHH
Confidence            45567788888754  2555544       47788899999998765 5666543 355688899988853  3445444


Q ss_pred             C
Q 040192          350 D  350 (386)
Q Consensus       350 ~  350 (386)
                      .
T Consensus       327 ~  327 (379)
T 4h09_A          327 Y  327 (379)
T ss_dssp             T
T ss_pred             H
Confidence            3

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.71  E-value=4.9e-05  Score=66.01  Aligned_cols=60  Identities=32%  Similarity=0.387  Sum_probs=25.8

Q ss_pred             CCCcCceecccCCcccccc---chhhcCCCccCEEEcCCCCCCcccHhhhccC--CCCEEEccCCcc
Q 040192           99 SMPRLNVLNLSGAIRLYSF---PLGISKLISLQHLDLSNTGIAELPKELNALV--NLTCLNLEETWR  160 (386)
Q Consensus        99 ~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~--~L~~L~l~~~~~  160 (386)
                      .+++|+.|++++| .+..+   +..+..+++|+.|++++|.++.+. .+..+.  +|+.|++++|+.
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl  232 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSL  232 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTT
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcC
Confidence            3444555555544 44332   223334455555555555444331 122222  445555555433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.70  E-value=1.3e-05  Score=69.56  Aligned_cols=79  Identities=32%  Similarity=0.427  Sum_probs=60.2

Q ss_pred             CCCCCCcEEecccCcCCCcCCh--hhhcCCCcCceecccCCccccccchhhcCCC--ccCEEEcCCCCCCc-cc------
Q 040192           73 PTCPYLRTLFLNNNAPLRRIDS--GFFQSMPRLNVLNLSGAIRLYSFPLGISKLI--SLQHLDLSNTGIAE-LP------  141 (386)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~i~~-l~------  141 (386)
                      ..+++|++|++++| .+..++.  ..+..+++|++|++++| .+..+. .+..+.  +|+.|++++|.++. +|      
T Consensus       167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            56899999999999 7766542  33678999999999999 887652 344444  89999999999873 43      


Q ss_pred             -HhhhccCCCCEEE
Q 040192          142 -KELNALVNLTCLN  154 (386)
Q Consensus       142 -~~~~~l~~L~~L~  154 (386)
                       ..+..+++|+.|+
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence             2456778888776

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.40  E-value=0.024  Score=43.21  Aligned_cols=54  Identities=24%  Similarity=0.416  Sum_probs=28.5

Q ss_pred             EEEcCCCCCC--cccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCC
Q 040192          129 HLDLSNTGIA--ELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGY  185 (386)
Q Consensus       129 ~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  185 (386)
                      .++-+++.++  .+|..+  -.+|+.|+|++| .+..++..++..+++|+.|++.+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence            4444555554  555332  234566666665 44555555555666666666665543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.25  E-value=0.03  Score=42.60  Aligned_cols=52  Identities=25%  Similarity=0.330  Sum_probs=34.7

Q ss_pred             ccEEEEcCCCCC--CCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccC
Q 040192           33 EEHLVYAGAGLS--ETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNN   86 (386)
Q Consensus        33 ~~~l~~~~~~l~--~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~   86 (386)
                      ...+.+++.++.  .+|.  .++.++++|+|++|.++.++..  ..+++|+.|++.+|
T Consensus        10 ~~~v~Cs~~~L~~~~vP~--~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           10 GTLVDCGRRGLTWASLPT--AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TTEEECCSSCCCTTTSCS--CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCEEEeCCCCCccccCCC--CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            347888888887  7774  2444677777777777766554  55666666666666

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.07  E-value=0.031  Score=45.81  Aligned_cols=110  Identities=13%  Similarity=0.054  Sum_probs=60.3

Q ss_pred             CCCCCCcEEecccCcCCCcCC----hhhhcCCCcCceecccCCccccc-----cchhhcCCCccCEEEcCCCCCCc----
Q 040192           73 PTCPYLRTLFLNNNAPLRRID----SGFFQSMPRLNVLNLSGAIRLYS-----FPLGISKLISLQHLDLSNTGIAE----  139 (386)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~i~~----  139 (386)
                      ..-+.|+.|+++++..+++..    ...+..-..|+.|++++| .+++     +...+..-+.|+.|+++.|.++.    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344566666666532333211    122445566777777777 5552     23334445667888888777762    


Q ss_pred             -ccHhhhccCCCCEEEccCCcc--ccc-----cchhhhcCCCCCcEEEEeccC
Q 040192          140 -LPKELNALVNLTCLNLEETWR--LTV-----IPRRLISSFSSLHVLRIFGSG  184 (386)
Q Consensus       140 -l~~~~~~l~~L~~L~l~~~~~--~~~-----~~~~~l~~l~~L~~L~l~~~~  184 (386)
                       +-..+..-+.|+.|+++++..  ++.     +.. ++..-++|+.|+++.+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCC
Confidence             223344455688888875421  221     112 24556778888876553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.26  E-value=0.061  Score=44.01  Aligned_cols=102  Identities=11%  Similarity=0.202  Sum_probs=72.3

Q ss_pred             CccEEEecCC-cccc--cC----CCCCCCCCcEEecccCcCCCcCCh----hhhcCCCcCceecccCCccccc-----cc
Q 040192           55 NVRRLSLMEN-QIEN--LS----EVPTCPYLRTLFLNNNAPLRRIDS----GFFQSMPRLNVLNLSGAIRLYS-----FP  118 (386)
Q Consensus        55 ~L~~L~l~~~-~~~~--~~----~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~-----~~  118 (386)
                      .|++|+++++ .+.+  ..    ....-+.|+.|++++| .+++...    ..+..-+.|+.|++++| .++.     +.
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala  119 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLL  119 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHH
Confidence            7999999985 7664  11    1266779999999999 6764332    23456688999999999 7773     34


Q ss_pred             hhhcCCCccCEEEcCCCC---CC-----cccHhhhccCCCCEEEccCC
Q 040192          119 LGISKLISLQHLDLSNTG---IA-----ELPKELNALVNLTCLNLEET  158 (386)
Q Consensus       119 ~~~~~l~~L~~L~l~~~~---i~-----~l~~~~~~l~~L~~L~l~~~  158 (386)
                      .++..-+.|+.|+++++.   +.     .+-..+..-+.|+.|+++.+
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            455556779999998753   33     12344556678999999766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	386
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 5/158 (3%)

Query: 68  NLSEVPTC--PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLI 125
            L +VP    P    L L NN  +  I  G F+++  L+ L L         P   + L+
Sbjct: 21  GLEKVPKDLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 79

Query: 126 SLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGY 185
            L+ L LS   + ELP+++   +    ++  E  ++       ++    + +        
Sbjct: 80  KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139

Query: 186 SYSDGMIGNGEFEQLCGFRRSK--SLDVSALADLKRLN 221
              +G     +         +   ++       L  L+
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 177

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 10/127 (7%)

Query: 57  RRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYS 116
           R L L    +  L  +     +  L L++N  LR +            +  L  +     
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-LRALPPALAALR---CLEVLQASDNALE 56

Query: 117 FPLGISKLISLQHLDLSNTGIAELP--KELNALVNLTCLNLEETWRLTVIPR---RLISS 171
              G++ L  LQ L L N  + +    + L +   L  LNL+    L        RL   
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEM 115

Query: 172 FSSLHVL 178
             S+  +
Sbjct: 116 LPSVSSI 122

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 6e-05
 Identities = 32/166 (19%), Positives = 56/166 (33%), Gaps = 26/166 (15%)

Query: 34  EHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNN------- 86
           + L   G  L +   +     N+  L L  NQI NL+ +     L  L L  N       
Sbjct: 222 DELSLNGNQLKDIGTLASL-TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 280

Query: 87  ------------APLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN 134
                          +  D     ++  L  L L       S    +S L  LQ L  +N
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF--NNISDISPVSSLTKLQRLFFAN 338

Query: 135 TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRI 180
             ++++   L  L N+  L+        + P   +++ + +  L +
Sbjct: 339 NKVSDVS-SLANLTNINWLSAGHNQISDLTP---LANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 9e-05
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 62  MENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGI 121
            ENQ+E++S +     L  L L  N      D     S+ +L  L  +      S    +
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFN---NISDISPVSSLTKLQRLFFAN--NKVSDVSSL 347

Query: 122 SKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEE 157
           + L ++  L   +  I++L   L  L  +T L L +
Sbjct: 348 ANLTNINWLSAGHNQISDLT-PLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 54  KNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110
             ++RL    N++ ++S +     +  L   +N  +  +      ++ R+  L L+ 
Sbjct: 329 TKLQRLFFANNKVSDVSSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLND 382

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 75  CPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN 134
            P L  L ++NN  L  + +      PRL  L  S    L   P       +L+ L +  
Sbjct: 283 PPSLEELNVSNN-KLIELPALP----PRLERLIASFN-HLAEVPELPQ---NLKQLHVEY 333

Query: 135 TGIAELPKELNALVNL 150
             + E P    ++ +L
Sbjct: 334 NPLREFPDIPESVEDL 349

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	386
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.76
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.74
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.61
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.61
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.38
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.35
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.05
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.01
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.96
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.93
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.59
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.77
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.69
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.27
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.0
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.25

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=7.1e-21  Score=175.15  Aligned_cols=278  Identities=16%  Similarity=0.236  Sum_probs=143.5

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCc
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI  112 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  112 (386)
                      ...+.+.+.++..++.+..++ +|++|++++|.++++++...+++|++|++++| .+..+++  ++.+++|+.|++.++ 
T Consensus        46 l~~L~l~~~~I~~l~gl~~L~-nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n-~i~~i~~--l~~l~~L~~L~~~~~-  120 (384)
T d2omza2          46 VTTLQADRLGIKSIDGVEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNN-  120 (384)
T ss_dssp             CCEEECCSSCCCCCTTGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-
T ss_pred             CCEEECCCCCCCCccccccCC-CCCEEeCcCCcCCCCccccCCccccccccccc-ccccccc--ccccccccccccccc-
Confidence            456666666676666666666 77777777777777766677777777777777 5555544  567777777776655 


Q ss_pred             cccccchhhcCCCccCEEEcCCCCC------------------------------------------CcccHhhhccCCC
Q 040192          113 RLYSFPLGISKLISLQHLDLSNTGI------------------------------------------AELPKELNALVNL  150 (386)
Q Consensus       113 ~~~~~~~~~~~l~~L~~L~l~~~~i------------------------------------------~~l~~~~~~l~~L  150 (386)
                      .+..++... ....+.......+.+                                          .........++++
T Consensus       121 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (384)
T d2omza2         121 QITDIDPLK-NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL  199 (384)
T ss_dssp             CCCCCGGGT-TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred             ccccccccc-ccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence            332211100 000111111000000                                          0001223445556


Q ss_pred             CEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccC
Q 040192          151 TCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECY  229 (386)
Q Consensus       151 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~  229 (386)
                      +.++++++ .+..++.  ...+++|+.|++++|.+........+++|+.+. ..+...+  ...+..+++|+.|++++++
T Consensus       200 ~~l~l~~n-~i~~~~~--~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~L~~L~l~~~~  274 (384)
T d2omza2         200 ESLIATNN-QISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQ  274 (384)
T ss_dssp             SEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSC
T ss_pred             ceeeccCC-ccCCCCc--ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCC--CCcccccccCCEeeccCcc
Confidence            66666665 3333333  445556666666666555543334444444443 1112221  2234556667777766664


Q ss_pred             CccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhccCcccccCCCCccccc
Q 040192          230 GLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQF  309 (386)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L  309 (386)
                      ... ..  .+.         .++.++.+.+..| .++.++.+..++++++|+++++ .++++.         .+..+++|
T Consensus       275 l~~-~~--~~~---------~~~~l~~l~~~~n-~l~~~~~~~~~~~l~~L~ls~n-~l~~l~---------~l~~l~~L  331 (384)
T d2omza2         275 ISN-IS--PLA---------GLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN-NISDIS---------PVSSLTKL  331 (384)
T ss_dssp             CCC-CG--GGT---------TCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS-CCSCCG---------GGGGCTTC
T ss_pred             cCC-CC--ccc---------ccccccccccccc-ccccccccchhcccCeEECCCC-CCCCCc---------ccccCCCC
Confidence            432 11  111         4555666666655 3455555555566666666653 244431         23455666


Q ss_pred             ceeeeccccccccccCCCcCCCCccEEeecCcccCcCC
Q 040192          310 HFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKL  347 (386)
Q Consensus       310 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l  347 (386)
                      ++|++++| .+++++ ....+++|++|+++++ +++.+
T Consensus       332 ~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l  366 (384)
T d2omza2         332 QRLFFANN-KVSDVS-SLANLTNINWLSAGHN-QISDL  366 (384)
T ss_dssp             CEEECCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBC
T ss_pred             CEEECCCC-CCCCCh-hHcCCCCCCEEECCCC-cCCCC
Confidence            66666666 455444 2444666666666553 45554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=2.4e-20  Score=171.53  Aligned_cols=286  Identities=16%  Similarity=0.206  Sum_probs=209.6

Q ss_pred             CCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhc
Q 040192           43 LSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGIS  122 (386)
Q Consensus        43 l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  122 (386)
                      +.+....+.+. ++++|+++++++..++....+++|++|++++| .++++++  ++++++|++|++++| .+..++ .++
T Consensus        34 ~~~~~~~~~l~-~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N-~l~~l~~--l~~L~~L~~L~L~~n-~i~~i~-~l~  107 (384)
T d2omza2          34 VTDTVSQTDLD-QVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNN-QIADIT-PLA  107 (384)
T ss_dssp             TTSEECHHHHT-TCCEEECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGT
T ss_pred             CCCccCHHHhC-CCCEEECCCCCCCCccccccCCCCCEEeCcCC-cCCCCcc--ccCCccccccccccc-cccccc-ccc
Confidence            33333455677 89999999999999877789999999999999 8888875  889999999999999 887765 378


Q ss_pred             CCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCcc-----------------------------------------c
Q 040192          123 KLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWR-----------------------------------------L  161 (386)
Q Consensus       123 ~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~-----------------------------------------~  161 (386)
                      .+++|+.|+++++.++.++.. .....+.......+..                                         .
T Consensus       108 ~l~~L~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         108 NLTNLTGLTLFNNQITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             TCTTCCEEECCSSCCCCCGGG-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccc
Confidence            999999999999988765432 2223333332221100                                         0


Q ss_pred             cccchhhhcCCCCCcEEEEeccCCccccCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhccccc
Q 040192          162 TVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKS  240 (386)
Q Consensus       162 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  240 (386)
                      .... .....+++++.++++.+.+...........|+.+. ..+...+  ...+..+++|+.|++++|.... ..  .+.
T Consensus       187 ~~~~-~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~-~~--~~~  260 (384)
T d2omza2         187 VSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN-LA--PLS  260 (384)
T ss_dssp             CCCC-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG--GGT
T ss_pred             cccc-cccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCC-CC--ccc
Confidence            0011 13677889999999999888765455666777665 2222222  3467788999999999986543 32  222


Q ss_pred             ccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccccc
Q 040192          241 VVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNL  320 (386)
Q Consensus       241 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  320 (386)
                               .+++|+.|+++++ .++.++.+..++.++.+++.++. ++.+         ..+..+++++.|+++++ ++
T Consensus       261 ---------~~~~L~~L~l~~~-~l~~~~~~~~~~~l~~l~~~~n~-l~~~---------~~~~~~~~l~~L~ls~n-~l  319 (384)
T d2omza2         261 ---------GLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQ-LEDI---------SPISNLKNLTYLTLYFN-NI  319 (384)
T ss_dssp             ---------TCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CSCC---------GGGGGCTTCSEEECCSS-CC
T ss_pred             ---------ccccCCEeeccCc-ccCCCCccccccccccccccccc-cccc---------cccchhcccCeEECCCC-CC
Confidence                     6899999999998 57788788889999999999855 5544         24567899999999999 77


Q ss_pred             ccccCCCcCCCCccEEeecCcccCcCCCCCcccccCcceEEEchHH
Q 040192          321 KSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIRGSRE  366 (386)
Q Consensus       321 ~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~i~~~~~~  366 (386)
                      .+++ ....+++|++|++++| +++.++. .... ..++.++....
T Consensus       320 ~~l~-~l~~l~~L~~L~L~~n-~l~~l~~-l~~l-~~L~~L~l~~N  361 (384)
T d2omza2         320 SDIS-PVSSLTKLQRLFFANN-KVSDVSS-LANL-TNINWLSAGHN  361 (384)
T ss_dssp             SCCG-GGGGCTTCCEEECCSS-CCCCCGG-GGGC-TTCCEEECCSS
T ss_pred             CCCc-ccccCCCCCEEECCCC-CCCCChh-HcCC-CCCCEEECCCC
Confidence            7765 3667999999999997 7888762 3333 66777776643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=1.5e-19  Score=161.15  Aligned_cols=150  Identities=23%  Similarity=0.306  Sum_probs=120.1

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...++|++.++..+|.  .+++++++|++++|.++.++..  ..+++|++|++++| .+..+++..|..+++|++|++++
T Consensus        12 ~~~~~C~~~~L~~lP~--~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n-~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCCSCCC--SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCCccCC--CCCCCCCEEECcCCcCCCcChhHhhccccccccccccc-cccccchhhhhCCCccCEecccC
Confidence            6678999999999987  3344899999999999998753  78999999999999 77777776689999999999999


Q ss_pred             CccccccchhhcCCCccCEEEcCCCCCCcccHh-hhccCCCCEEEccCCccc-cccchhhhcCCCCCcEEEEeccCCccc
Q 040192          111 AIRLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRL-TVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       111 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      | .+..+|..  ....++.|++..+.+..++.. +.....+..+....+... .......+..+++|+.+++.++.+...
T Consensus        89 n-~l~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          89 N-QLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             S-CCSBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             C-ccCcCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            9 88888754  346789999999999887754 456777888888776322 222233478889999999999877654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=2.6e-20  Score=166.71  Aligned_cols=131  Identities=22%  Similarity=0.352  Sum_probs=97.8

Q ss_pred             CccEEEecCCcccc---cCCC-CCCCCCcEEeccc-CcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccC
Q 040192           55 NVRRLSLMENQIEN---LSEV-PTCPYLRTLFLNN-NAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQ  128 (386)
Q Consensus        55 ~L~~L~l~~~~~~~---~~~~-~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~  128 (386)
                      +++.|+++++.+.+   +|.. ..+++|++|++++ |...+.+|.. ++++++|++|++++| .+..+ +..+..+.+|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N-~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccc-cccccccccccchhhhc
Confidence            67888888887775   4444 7888888888876 4233467776 788888888888888 66644 55677888888


Q ss_pred             EEEcCCCCCC-cccHhhhccCCCCEEEccCCccccccchhhhcCCCCC-cEEEEeccCCccc
Q 040192          129 HLDLSNTGIA-ELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSL-HVLRIFGSGYSYS  188 (386)
Q Consensus       129 ~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~  188 (386)
                      +++++.|.+. .+|..+..++.++.+++++|.....+|.. +..+.++ +.+.++.|.+.+.
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~  189 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEE
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccc-ccccccccccccccccccccc
Confidence            8888888765 66778888888888888888666677765 6666554 7777777766654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=2.8e-18  Score=152.79  Aligned_cols=249  Identities=18%  Similarity=0.228  Sum_probs=179.3

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLS  133 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~  133 (386)
                      ..+.++-++..++.+|.. -.+++++|++++| .+..+++..|.++++|++|+++++ .+..+ |..|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~lP~~-l~~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n-~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKD-LPPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSCCCS-CCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCccCCC-CCCCCCEEECcCC-cCCCcChhHhhccccccccccccc-cccccchhhhhCCCccCEeccc
Confidence            356777777788888764 2468999999999 889898776899999999999999 77766 5678999999999999


Q ss_pred             CCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccc
Q 040192          134 NTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSA  213 (386)
Q Consensus       134 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~  213 (386)
                      +|.++.+|..+  ...++.|++.++ .+..++...+.....+..+....+......                   .....
T Consensus        88 ~n~l~~l~~~~--~~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~-------------------~~~~~  145 (305)
T d1xkua_          88 KNQLKELPEKM--PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSG-------------------IENGA  145 (305)
T ss_dssp             SSCCSBCCSSC--CTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGG-------------------BCTTG
T ss_pred             CCccCcCccch--hhhhhhhhcccc-chhhhhhhhhhccccccccccccccccccC-------------------CCccc
Confidence            99999888643  467899999888 556677665777788888887776443321                   11233


Q ss_pred             cccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc-ccccCCCCCcEEeecCCCccchhh
Q 040192          214 LADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL-TFLIFAPNLKSIEVDSCYALEEIV  292 (386)
Q Consensus       214 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~c~~~~~~~  292 (386)
                      +..+++|+.+.+.+|.... ++ ..           .+++|++|++++|...... ..+..++.+++|++++|. ++++.
T Consensus       146 ~~~l~~L~~l~l~~n~l~~-l~-~~-----------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~-l~~~~  211 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNITT-IP-QG-----------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVD  211 (305)
T ss_dssp             GGGCTTCCEEECCSSCCCS-CC-SS-----------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEEC
T ss_pred             cccccccCccccccCCccc-cC-cc-----------cCCccCEEECCCCcCCCCChhHhhcccccccccccccc-ccccc
Confidence            4556777778877775432 11 11           4677888888877433322 345667778888887753 66655


Q ss_pred             ccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCCc
Q 040192          293 SDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDS  351 (386)
Q Consensus       293 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~  351 (386)
                      .       ..+..+++|++|+|+++ .+.+++.....+++|+.|+++++ +|+.|+...
T Consensus       212 ~-------~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~  261 (305)
T d1xkua_         212 N-------GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSND  261 (305)
T ss_dssp             T-------TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTS
T ss_pred             c-------ccccccccceeeecccc-cccccccccccccCCCEEECCCC-ccCccChhh
Confidence            4       36667788888888887 67777766677888888888874 677776543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.8e-18  Score=152.37  Aligned_cols=226  Identities=23%  Similarity=0.282  Sum_probs=181.9

Q ss_pred             hhccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCc
Q 040192           25 SSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPR  102 (386)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~  102 (386)
                      .|.|.......+.+++.++..+|.  .++..+++|++++|.++.++..  ..+++|+.|+++++ .+..++...+..+..
T Consensus         5 ~C~C~~~~~~~v~c~~~~L~~iP~--~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~   81 (284)
T d1ozna_           5 ACVCYNEPKVTTSCPQQGLQAVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLAL   81 (284)
T ss_dssp             TCEEECSSSCEEECCSSCCSSCCT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred             CCEEcCCCCeEEEcCCCCCCccCC--CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccc-ccccccccccccccc
Confidence            456665567788999999999986  3444899999999999998764  88999999999999 788877777888999


Q ss_pred             CceecccCCcccccc-chhhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEE
Q 040192          103 LNVLNLSGAIRLYSF-PLGISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRI  180 (386)
Q Consensus       103 L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  180 (386)
                      ++.+.......+..+ +..+.++++|++|++++|.+..++ ..+....+|+.+++++| .++.++..++..+++|++|++
T Consensus        82 ~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l  160 (284)
T d1ozna_          82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFL  160 (284)
T ss_dssp             CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccc-cccccChhHhccccchhhccc
Confidence            999887655467766 567889999999999999988665 45667889999999999 667787766889999999999


Q ss_pred             eccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEec
Q 040192          181 FGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQIS  260 (386)
Q Consensus       181 ~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  260 (386)
                      ++|.+...                     ....+..+++|+.+.+++|+... +.+..+.         .+++|+.|+++
T Consensus       161 ~~N~l~~l---------------------~~~~f~~l~~L~~l~l~~N~l~~-i~~~~f~---------~l~~L~~L~l~  209 (284)
T d1ozna_         161 HGNRISSV---------------------PERAFRGLHSLDRLLLHQNRVAH-VHPHAFR---------DLGRLMTLYLF  209 (284)
T ss_dssp             CSSCCCEE---------------------CTTTTTTCTTCCEEECCSSCCCE-ECTTTTT---------TCTTCCEEECC
T ss_pred             ccCccccc---------------------chhhhccccccchhhhhhccccc-cChhHhh---------hhhhccccccc
Confidence            99987664                     12345667899999999987765 4455555         78999999999


Q ss_pred             CCCCCCccc--cccCCCCCcEEeecCCC
Q 040192          261 YCKELKDLT--FLIFAPNLKSIEVDSCY  286 (386)
Q Consensus       261 ~~~~l~~~~--~l~~l~~L~~L~l~~c~  286 (386)
                      +|. +..++  .++.+++|+.|++++++
T Consensus       210 ~N~-i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         210 ANN-LSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             SSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             ccc-cccccccccccccccCEEEecCCC
Confidence            994 55543  46788999999999855

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.6e-18  Score=148.22  Aligned_cols=191  Identities=24%  Similarity=0.249  Sum_probs=127.2

Q ss_pred             cEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192           34 EHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA  111 (386)
Q Consensus        34 ~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  111 (386)
                      ..++|.+.++..+|.  .+++++++|++++|.+..++..  ..+++|++|++++| .++.++.  ++.+++|++|++++|
T Consensus        13 ~~v~C~~~~L~~iP~--~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~--~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          13 LEVNCDKRNLTALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHN   87 (266)
T ss_dssp             CEEECTTSCCSSCCS--CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--CSCCTTCCEEECCSS
T ss_pred             eEEEccCCCCCeeCc--CcCcCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc--ccccccccccccccc
Confidence            446788888888874  2333688888888888776543  67778888888877 6666654  456777777777777


Q ss_pred             ccccccchhhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccC
Q 040192          112 IRLYSFPLGISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDG  190 (386)
Q Consensus       112 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  190 (386)
                       .+...+..+..+++|++|+++++.+..++ ..+..+.+++.|++++| .+..++...+..+++|+.+++++|.++..  
T Consensus        88 -~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N~l~~~--  163 (266)
T d1p9ag_          88 -QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTEL--  163 (266)
T ss_dssp             -CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCC--
T ss_pred             -cccccccccccccccccccccccccceeecccccccccccccccccc-ccceeccccccccccchhccccccccccc--
Confidence             66666666777777777777777776554 34456677777777777 55566665566777777777777766554  


Q ss_pred             CCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCC
Q 040192          191 MIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCK  263 (386)
Q Consensus       191 ~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  263 (386)
                                         ....+..+++|++|++++|+.. .++...+          .+++|+.|+|++|+
T Consensus       164 -------------------~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~----------~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         164 -------------------PAGLLNGLENLDTLLLQENSLY-TIPKGFF----------GSHLLPFAFLHGNP  206 (266)
T ss_dssp             -------------------CTTTTTTCTTCCEEECCSSCCC-CCCTTTT----------TTCCCSEEECCSCC
T ss_pred             -------------------CccccccccccceeecccCCCc-ccChhHC----------CCCCCCEEEecCCC
Confidence                               1223445667777777776543 3433333          45667777777664

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.76  E-value=7.3e-18  Score=150.58  Aligned_cols=267  Identities=14%  Similarity=0.176  Sum_probs=198.9

Q ss_pred             ccCCCeeechhH--HHhhhcccccc----ccEEEEcCCCCCC---CC-cccccccCccEEEecC-Ccccc-cCCC-CCCC
Q 040192           10 VETWKCTKEAML--PRMSSDIEEEK----EEHLVYAGAGLSE---TP-DVRKWEKNVRRLSLME-NQIEN-LSEV-PTCP   76 (386)
Q Consensus        10 ~~~~~~~~~d~~--~~~~~~~~~~~----~~~l~~~~~~l~~---~p-~~~~~~~~L~~L~l~~-~~~~~-~~~~-~~~~   76 (386)
                      +..|.-. .|.|  .|.++.|....    ...+++.+.++..   +| .+..++ +|++|++++ |.+.+ +|.. .+++
T Consensus        24 l~sW~~~-~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~  101 (313)
T d1ogqa_          24 LSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLT  101 (313)
T ss_dssp             GTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCT
T ss_pred             CCCCCCC-CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCc-ccccccccccccccccccccccccc
Confidence            5678533 5777  49999997643    4557788887774   44 488899 999999997 78885 7765 8999


Q ss_pred             CCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCC-cccHhhhccCCC-CEEE
Q 040192           77 YLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIA-ELPKELNALVNL-TCLN  154 (386)
Q Consensus        77 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L-~~L~  154 (386)
                      +|++|++++| .+...++..+..+..|+++++.+|.....+|..+..+++++.+++++|.+. .+|..+..+.++ +.++
T Consensus       102 ~L~~L~Ls~N-~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~  180 (313)
T d1ogqa_         102 QLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT  180 (313)
T ss_dssp             TCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred             ccchhhhccc-cccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccc
Confidence            9999999999 666666666889999999999999444467889999999999999999987 788888888776 8899


Q ss_pred             ccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccch
Q 040192          155 LEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAEL  234 (386)
Q Consensus       155 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  234 (386)
                      +++|+.....+.. +..+..+ .+++..+.....                     .+..+..+++++.+++.++......
T Consensus       181 ~~~n~l~~~~~~~-~~~l~~~-~l~l~~~~~~~~---------------------~~~~~~~~~~l~~l~~~~~~l~~~~  237 (313)
T d1ogqa_         181 ISRNRLTGKIPPT-FANLNLA-FVDLSRNMLEGD---------------------ASVLFGSDKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             CCSSEEEEECCGG-GGGCCCS-EEECCSSEEEEC---------------------CGGGCCTTSCCSEEECCSSEECCBG
T ss_pred             ccccccccccccc-ccccccc-cccccccccccc---------------------ccccccccccccccccccccccccc
Confidence            9999655555553 6665544 577666544433                     2344556788999999888655432


Q ss_pred             hcccccccccCccccccCcccEEEecCCCCCC-cc-ccccCCCCCcEEeecCCCccchhhccCcccccCCCCccccccee
Q 040192          235 KMDYKSVVQNTGQSFVFHSLKKFQISYCKELK-DL-TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFL  312 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~-~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L  312 (386)
                        ..+.         .+++|+.|++++|+ ++ .+ ..++.+++|++|+|++|. ++..++        ..+.+++|+.+
T Consensus       238 --~~~~---------~~~~L~~L~Ls~N~-l~g~iP~~l~~L~~L~~L~Ls~N~-l~g~iP--------~~~~L~~L~~l  296 (313)
T d1ogqa_         238 --GKVG---------LSKNLNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNN-LCGEIP--------QGGNLQRFDVS  296 (313)
T ss_dssp             --GGCC---------CCTTCCEEECCSSC-CEECCCGGGGGCTTCCEEECCSSE-EEEECC--------CSTTGGGSCGG
T ss_pred             --cccc---------cccccccccCccCe-ecccCChHHhCCCCCCEEECcCCc-ccccCC--------CcccCCCCCHH
Confidence              2232         67899999999994 54 44 458889999999999955 553222        44677889999


Q ss_pred             eeccccccccc
Q 040192          313 CFSYLPNLKSI  323 (386)
Q Consensus       313 ~l~~~~~l~~~  323 (386)
                      ++++++.+...
T Consensus       297 ~l~~N~~l~g~  307 (313)
T d1ogqa_         297 AYANNKCLCGS  307 (313)
T ss_dssp             GTCSSSEEEST
T ss_pred             HhCCCccccCC
Confidence            99888666543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=3e-17  Score=139.49  Aligned_cols=133  Identities=25%  Similarity=0.376  Sum_probs=68.8

Q ss_pred             CCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcC
Q 040192           44 SETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISK  123 (386)
Q Consensus        44 ~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  123 (386)
                      .++...+++. +|+.|++.+|.++.++....+++|++|++++| .+..+.+  +..++++++++++++ .++.++ .+..
T Consensus        32 ~d~~~~~~l~-~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n-~i~~~~~--l~~l~~l~~l~~~~n-~~~~i~-~l~~  105 (227)
T d1h6ua2          32 TDTVTQADLD-GITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGN-PLKNVS-AIAG  105 (227)
T ss_dssp             TSEECHHHHH-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTT
T ss_pred             CCcCCHHHcC-CcCEEECCCCCCCcchhHhcCCCCcEeecCCc-eeecccc--ccccccccccccccc-cccccc-cccc
Confidence            3333345555 66666666666666555566666666666666 4444433  455666666666555 444443 3445


Q ss_pred             CCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCc
Q 040192          124 LISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYS  186 (386)
Q Consensus       124 l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  186 (386)
                      +++|+.++++++....++ .+...+.++.+.++.+ .+.....  +..+++|++|++.++.+.
T Consensus       106 l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~-~~~~~~~--~~~~~~L~~L~l~~n~~~  164 (227)
T d1h6ua2         106 LQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVS  164 (227)
T ss_dssp             CTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             cccccccccccccccccc-hhccccchhhhhchhh-hhchhhh--hccccccccccccccccc
Confidence            555666665555544432 2334455555555554 2222222  444555555555554433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=6.9e-18  Score=143.54  Aligned_cols=204  Identities=17%  Similarity=0.242  Sum_probs=120.7

Q ss_pred             cEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCC
Q 040192           57 RRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTG  136 (386)
Q Consensus        57 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  136 (386)
                      ..+++..+++.+......+.+|+.|.+.+| .++++..  +.++++|++|++++| .+..+++ +..+++++++++++|.
T Consensus        22 ~~~~l~~~~~~d~~~~~~l~~L~~L~l~~~-~i~~l~~--l~~l~~L~~L~ls~n-~i~~~~~-l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          22 IKIAAGKSNVTDTVTQADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHHHTTCSSTTSEECHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC
T ss_pred             HHHHhCCCCcCCcCCHHHcCCcCEEECCCC-CCCcchh--HhcCCCCcEeecCCc-eeecccc-cccccccccccccccc
Confidence            344455555555444466777888888777 6666643  677777888877777 6665542 6677777777777777


Q ss_pred             CCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccccccc
Q 040192          137 IAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALAD  216 (386)
Q Consensus       137 i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~  216 (386)
                      ++.++ .+..+++|+.+.++++. ...++.  +...+.+..+.+..+.+...                       ..+..
T Consensus        97 ~~~i~-~l~~l~~L~~l~l~~~~-~~~~~~--~~~~~~~~~l~~~~~~~~~~-----------------------~~~~~  149 (227)
T d1h6ua2          97 LKNVS-AIAGLQSIKTLDLTSTQ-ITDVTP--LAGLSNLQVLYLDLNQITNI-----------------------SPLAG  149 (227)
T ss_dssp             CSCCG-GGTTCTTCCEEECTTSC-CCCCGG--GTTCTTCCEEECCSSCCCCC-----------------------GGGGG
T ss_pred             ccccc-ccccccccccccccccc-ccccch--hccccchhhhhchhhhhchh-----------------------hhhcc
Confidence            76654 35667777777777662 233332  45566666666655544333                       22334


Q ss_pred             ccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhccCc
Q 040192          217 LKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVP  296 (386)
Q Consensus       217 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~  296 (386)
                      +++|+.|.+++|.... .  ..+.         .+++|+.|++++| .+++++.++.+++|++|+|++|. ++++.    
T Consensus       150 ~~~L~~L~l~~n~~~~-~--~~l~---------~l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~L~Ls~N~-lt~i~----  211 (227)
T d1h6ua2         150 LTNLQYLSIGNAQVSD-L--TPLA---------NLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ-ISDVS----  211 (227)
T ss_dssp             CTTCCEEECCSSCCCC-C--GGGT---------TCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC-CCBCG----
T ss_pred             cccccccccccccccc-c--hhhc---------ccccceecccCCC-ccCCChhhcCCCCCCEEECcCCc-CCCCc----
Confidence            5566666666654432 1  1122         4566666666666 45666556666666666666643 55442    


Q ss_pred             ccccCCCCcccccceeeec
Q 040192          297 EVMMGNLNPFAQFHFLCFS  315 (386)
Q Consensus       297 ~~~~~~~~~~~~L~~L~l~  315 (386)
                           .+..+++|+.|+++
T Consensus       212 -----~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         212 -----PLANTSNLFIVTLT  225 (227)
T ss_dssp             -----GGTTCTTCCEEEEE
T ss_pred             -----ccccCCCCCEEEee
Confidence                 23455666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.9e-17  Score=143.12  Aligned_cols=195  Identities=20%  Similarity=0.169  Sum_probs=150.6

Q ss_pred             CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192           55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN  134 (386)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  134 (386)
                      ++.+++.++++++.+|..- .++++.|++++| .+..++...|.++++|++|++++| .++.++. ++.+++|++|++++
T Consensus        11 ~~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDL-PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSH   86 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCC-CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCS
T ss_pred             CCeEEEccCCCCCeeCcCc-CcCCCEEECcCC-cCCCcCHHHhhccccccccccccc-ccccccc-cccccccccccccc
Confidence            5566788888888877541 258999999999 888888777889999999999999 8887763 56889999999999


Q ss_pred             CCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccccc
Q 040192          135 TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSAL  214 (386)
Q Consensus       135 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l  214 (386)
                      |.++..+..+..+++|+.|+++++ ....++...+..+.+++.|++.+|.+....                     ...+
T Consensus        87 N~l~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~---------------------~~~~  144 (266)
T d1p9ag_          87 NQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLP---------------------PGLL  144 (266)
T ss_dssp             SCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCC---------------------TTTT
T ss_pred             cccccccccccccccccccccccc-ccceeeccccccccccccccccccccceec---------------------cccc
Confidence            999888888888999999999988 445555555788889999999888776541                     2234


Q ss_pred             ccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc-cccCCCCCcEEeecCCC
Q 040192          215 ADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT-FLIFAPNLKSIEVDSCY  286 (386)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~c~  286 (386)
                      ..+++++.+++++|+... ++...+.         .+++|++|+|++| .++.++ .+..+++|+.|+|++++
T Consensus       145 ~~l~~l~~l~l~~N~l~~-~~~~~~~---------~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         145 TPTPKLEKLSLANNNLTE-LPAGLLN---------GLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TTCTTCCEEECTTSCCSC-CCTTTTT---------TCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cccccchhcccccccccc-cCccccc---------cccccceeecccC-CCcccChhHCCCCCCCEEEecCCC
Confidence            456788889998886543 4444444         6888999999988 477764 35667888889888755

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.3e-18  Score=148.28  Aligned_cols=210  Identities=18%  Similarity=0.173  Sum_probs=114.6

Q ss_pred             CCCcCceecccCCccccc--cchhhcCCCccCEEEcCCCCCC-cccHhhhccCCCCEEEccCCccccccc-hhhhcCCCC
Q 040192           99 SMPRLNVLNLSGAIRLYS--FPLGISKLISLQHLDLSNTGIA-ELPKELNALVNLTCLNLEETWRLTVIP-RRLISSFSS  174 (386)
Q Consensus        99 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~  174 (386)
                      ....|++|+++++ .+..  +...+..+++|++|+++++.++ ..+..++.+++|++|++++|..+++.. ..+..++++
T Consensus        44 ~~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          44 SPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             cCCCCCEEECCCC-ccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            3445666666655 4432  2334456666666666666655 333455566666777766664444322 112345667


Q ss_pred             CcEEEEeccCCccccCCCcCcccccccceeecCCccccccc-cccCCcEEEeeccC-CccchhcccccccccCccccccC
Q 040192          175 LHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALA-DLKRLNRLKIAECY-GLAELKMDYKSVVQNTGQSFVFH  252 (386)
Q Consensus       175 L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~  252 (386)
                      |++|++++|......+.                   ...+. .+++|+.|+++++. .+.+.....+..        .++
T Consensus       123 L~~L~ls~c~~~~~~~~-------------------~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~--------~~~  175 (284)
T d2astb2         123 LDELNLSWCFDFTEKHV-------------------QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR--------RCP  175 (284)
T ss_dssp             CCEEECCCCTTCCHHHH-------------------HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH--------HCT
T ss_pred             ccccccccccccccccc-------------------hhhhcccccccchhhhccccccccccccccccc--------ccc
Confidence            77777766532211000                   01111 13567777776642 222222222221        577


Q ss_pred             cccEEEecCCCCCCc--cccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCC
Q 040192          253 SLKKFQISYCKELKD--LTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPF  330 (386)
Q Consensus       253 ~L~~L~l~~~~~l~~--~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  330 (386)
                      +|++|++++|..+++  +..+..+++|++|++++|..+++...       ..+..+|+|+.|++++|..-..+......+
T Consensus       176 ~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l-------~~L~~~~~L~~L~l~~~~~d~~l~~l~~~l  248 (284)
T d2astb2         176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-------LELGEIPTLKTLQVFGIVPDGTLQLLKEAL  248 (284)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-------GGGGGCTTCCEEECTTSSCTTCHHHHHHHS
T ss_pred             cccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH-------HHHhcCCCCCEEeeeCCCCHHHHHHHHHhC
Confidence            788888887776664  34566778888888888777765544       245667788888887773222222222346


Q ss_pred             CCccEEeecCcccCcCC
Q 040192          331 PHLKEMKVIHCLKLKKL  347 (386)
Q Consensus       331 ~~L~~L~i~~c~~L~~l  347 (386)
                      |+|+.    +|..++.+
T Consensus       249 p~L~i----~~~~ls~~  261 (284)
T d2astb2         249 PHLQI----NCSHFTTI  261 (284)
T ss_dssp             TTSEE----SCCCSCCT
T ss_pred             ccccc----cCccCCCC
Confidence            66653    55666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.3e-16  Score=132.13  Aligned_cols=165  Identities=21%  Similarity=0.292  Sum_probs=90.7

Q ss_pred             CCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEE
Q 040192           75 CPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLN  154 (386)
Q Consensus        75 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~  154 (386)
                      +..|+.|++++| .+..+..  +..+++|++|++++| .+..++ .++.+++|++|++++|.++.++ .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~-~i~~l~~--l~~l~~L~~L~L~~n-~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGN-KLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCC-CCCCchh--HhhCCCCCEEeCCCc-cccCcc-ccccCccccccccccccccccc-cccccccccccc
Confidence            445555555555 4444432  445555666665555 555443 2445566666666666665554 355566666666


Q ss_pred             ccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccch
Q 040192          155 LEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAEL  234 (386)
Q Consensus       155 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  234 (386)
                      +++| ....++.  +..+++++.++++++.+.+.                       ..+..+++|+.+++++|+... +
T Consensus       119 l~~~-~~~~~~~--l~~l~~l~~l~~~~n~l~~~-----------------------~~~~~l~~L~~l~l~~n~l~~-i  171 (210)
T d1h6ta2         119 LEHN-GISDING--LVHLPQLESLYLGNNKITDI-----------------------TVLSRLTKLDTLSLEDNQISD-I  171 (210)
T ss_dssp             CTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCC-----------------------GGGGGCTTCSEEECCSSCCCC-C
T ss_pred             cccc-ccccccc--cccccccccccccccccccc-----------------------ccccccccccccccccccccc-c
Confidence            6665 2333433  55666666666666554433                       123334566666666664432 2


Q ss_pred             hcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecC
Q 040192          235 KMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDS  284 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~  284 (386)
                      .  .+.         .+++|++|++++| .+++++.+..+++|++|+|++
T Consensus       172 ~--~l~---------~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         172 V--PLA---------GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             G--GGT---------TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred             c--ccc---------CCCCCCEEECCCC-CCCCChhhcCCCCCCEEEccC
Confidence            1  122         5667777777766 466666666667777776653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.9e-16  Score=130.37  Aligned_cols=161  Identities=25%  Similarity=0.320  Sum_probs=73.6

Q ss_pred             CCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEE
Q 040192           75 CPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLN  154 (386)
Q Consensus        75 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~  154 (386)
                      +++++.|+++++ .+.++..  +..+++|++|++++| .+..+++ ++++++|++|++++|.+..++ .+..+++|+.|+
T Consensus        39 l~~l~~L~l~~~-~i~~l~~--l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKSIDG--VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCC-CCCCccc--cccCCCcCcCccccc-cccCccc-ccCCccccccccccccccccc-cccccccccccc
Confidence            344444444444 3333322  344445555555444 4444332 444555555555555444443 244455555555


Q ss_pred             ccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccch
Q 040192          155 LEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAEL  234 (386)
Q Consensus       155 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  234 (386)
                      ++++. ....+.  +..+++|+.|++++|.+...                       ..+..+++|+.|++.+|+... +
T Consensus       113 l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~~-----------------------~~l~~~~~L~~L~l~~n~l~~-l  165 (199)
T d2omxa2         113 LFNNQ-ITDIDP--LKNLTNLNRLELSSNTISDI-----------------------SALSGLTSLQQLNFSSNQVTD-L  165 (199)
T ss_dssp             CCSSC-CCCCGG--GTTCTTCSEEECCSSCCCCC-----------------------GGGTTCTTCSEEECCSSCCCC-C
T ss_pred             ccccc-cccccc--cchhhhhHHhhhhhhhhccc-----------------------ccccccccccccccccccccC-C
Confidence            55442 222222  44455555555555443332                       123334455555555543322 1


Q ss_pred             hcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEE
Q 040192          235 KMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSI  280 (386)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L  280 (386)
                        ..+.         .+++|+.|++++| .+++++.++.+++|++|
T Consensus       166 --~~l~---------~l~~L~~L~ls~N-~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         166 --KPLA---------NLTTLERLDISSN-KVSDISVLAKLTNLESL  199 (199)
T ss_dssp             --GGGT---------TCTTCCEEECCSS-CCCCCGGGGGCTTCSEE
T ss_pred             --cccc---------CCCCCCEEECCCC-CCCCCccccCCCCCCcC
Confidence              1122         4556666666665 35555555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.67  E-value=9.8e-15  Score=131.69  Aligned_cols=294  Identities=19%  Similarity=0.214  Sum_probs=176.8

Q ss_pred             chhHHHhhhccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhh
Q 040192           18 EAMLPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFF   97 (386)
Q Consensus        18 ~d~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~   97 (386)
                      ++.+..-...|.......+++++.+++.+|+.  .+ ++++|++++|.++.+|..  ..+|+.|++.+| .+..++.  +
T Consensus        25 ~~~~~~~l~~c~~~~l~~LdLs~~~L~~lp~~--~~-~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n-~l~~l~~--l   96 (353)
T d1jl5a_          25 REMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PP-HLESLVASCNSLTELPEL--PQSLKSLLVDNN-NLKALSD--L   96 (353)
T ss_dssp             HHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CT-TCSEEECCSSCCSSCCCC--CTTCCEEECCSS-CCSCCCS--C
T ss_pred             HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCC--CC-CCCEEECCCCCCcccccc--hhhhhhhhhhhc-ccchhhh--h
Confidence            44444444444444577899999999988863  34 899999999999988764  568999999988 6665543  1


Q ss_pred             cCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcE
Q 040192           98 QSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHV  177 (386)
Q Consensus        98 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  177 (386)
                        .+.|++|++++| .+..+|. ++.+++|+.|+++++.+...+..   ...+..+.+..+.. .....  +..++.++.
T Consensus        97 --p~~L~~L~L~~n-~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~-~~~~~--l~~l~~l~~  166 (353)
T d1jl5a_          97 --PPLLEYLGVSNN-QLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQL-EELPE--LQNLPFLTA  166 (353)
T ss_dssp             --CTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SSCCC--CTTCTTCCE
T ss_pred             --cccccccccccc-ccccccc-hhhhccceeeccccccccccccc---cccccchhhccccc-ccccc--cccccccee
Confidence              246999999998 7888874 57889999999999888766543   35566777766522 22222  677788888


Q ss_pred             EEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccc--------cccCcccc
Q 040192          178 LRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSV--------VQNTGQSF  249 (386)
Q Consensus       178 L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--------~~~~~~~~  249 (386)
                      +++..+.........  .....+..... ..........++.|+.+.+.++.... .+ .....        ........
T Consensus       167 L~l~~n~~~~~~~~~--~~~~~l~~~~~-~~~~~~~~~~l~~L~~l~l~~n~~~~-~~-~~~~~l~~~~~~~~~~~~~~~  241 (353)
T d1jl5a_         167 IYADNNSLKKLPDLP--LSLESIVAGNN-ILEELPELQNLPFLTTIYADNNLLKT-LP-DLPPSLEALNVRDNYLTDLPE  241 (353)
T ss_dssp             EECCSSCCSSCCCCC--TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSCCSS-CC-SCCTTCCEEECCSSCCSCCCC
T ss_pred             ccccccccccccccc--ccccccccccc-cccccccccccccccccccccccccc-cc-ccccccccccccccccccccc
Confidence            888877655431111  00111110000 00112234456677777776654322 10 00000        00000000


Q ss_pred             ccCcccEEEecCCC--CCCcc---------------ccccCCCCCcEEeecCCCccchhhccCcccccCCCCccccccee
Q 040192          250 VFHSLKKFQISYCK--ELKDL---------------TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFL  312 (386)
Q Consensus       250 ~~~~L~~L~l~~~~--~l~~~---------------~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L  312 (386)
                      ..+.+....+..+.  .+..+               .....+++|++|+|++|. ++.++.           .+++|++|
T Consensus       242 ~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~-----------~~~~L~~L  309 (353)
T d1jl5a_         242 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPA-----------LPPRLERL  309 (353)
T ss_dssp             CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCCC-----------CCTTCCEE
T ss_pred             ccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCc-cCcccc-----------ccCCCCEE
Confidence            12233333332221  01111               011335789999999864 665532           36899999


Q ss_pred             eeccccccccccCCCcCCCCccEEeecCcccCcCCCCCc
Q 040192          313 CFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDS  351 (386)
Q Consensus       313 ~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~  351 (386)
                      ++++| .+++++.   .+++|++|++++|+ |+++|...
T Consensus       310 ~L~~N-~L~~l~~---~~~~L~~L~L~~N~-L~~lp~~~  343 (353)
T d1jl5a_         310 IASFN-HLAEVPE---LPQNLKQLHVEYNP-LREFPDIP  343 (353)
T ss_dssp             ECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSCCCCC
T ss_pred             ECCCC-cCCcccc---ccCCCCEEECcCCc-CCCCCccc
Confidence            99988 6777763   35789999999975 99988643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.1e-15  Score=127.90  Aligned_cols=168  Identities=21%  Similarity=0.328  Sum_probs=136.9

Q ss_pred             ccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccC
Q 040192           49 VRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQ  128 (386)
Q Consensus        49 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  128 (386)
                      ..++. ++++|.++++.+..++....+++|++|++++| .+..+++  ++.+++|++|++++| .++.++ .+..+++|+
T Consensus        42 ~~~L~-~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n-~i~~l~~--~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~  115 (210)
T d1h6ta2          42 QNELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLK  115 (210)
T ss_dssp             HHHHH-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCC
T ss_pred             HHHhc-CccEEECcCCCCCCchhHhhCCCCCEEeCCCc-cccCccc--cccCccccccccccc-cccccc-ccccccccc
Confidence            34567 89999999999998887888999999999999 7777765  678999999999999 888876 578899999


Q ss_pred             EEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCC
Q 040192          129 HLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKS  208 (386)
Q Consensus       129 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~  208 (386)
                      .|+++++.+..++ .+..+++++.++++++ .+...+.  +..+++|+++++++|.+.+.                    
T Consensus       116 ~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n-~l~~~~~--~~~l~~L~~l~l~~n~l~~i--------------------  171 (210)
T d1h6ta2         116 SLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI--------------------  171 (210)
T ss_dssp             EEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC--------------------
T ss_pred             ccccccccccccc-cccccccccccccccc-ccccccc--cccccccccccccccccccc--------------------
Confidence            9999999888775 5778899999999998 4555554  78899999999999877654                    


Q ss_pred             ccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecC
Q 040192          209 LDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISY  261 (386)
Q Consensus       209 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  261 (386)
                         ..+..+++|++|++++|+.. +++  .+.         .+++|+.|+|++
T Consensus       172 ---~~l~~l~~L~~L~Ls~N~i~-~l~--~l~---------~l~~L~~L~Ls~  209 (210)
T d1h6ta2         172 ---VPLAGLTKLQNLYLSKNHIS-DLR--ALA---------GLKNLDVLELFS  209 (210)
T ss_dssp             ---GGGTTCTTCCEEECCSSCCC-BCG--GGT---------TCTTCSEEEEEE
T ss_pred             ---ccccCCCCCCEEECCCCCCC-CCh--hhc---------CCCCCCEEEccC
Confidence               23556788999999988653 332  333         789999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.2e-15  Score=134.12  Aligned_cols=198  Identities=26%  Similarity=0.341  Sum_probs=164.6

Q ss_pred             cccEEEEcCCCCCCCCc--ccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192           32 KEEHLVYAGAGLSETPD--VRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN  107 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~--~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  107 (386)
                      ..+.+.++++.++++|.  +..++ +|++|+++++.+..++..  ..+..++.+.+..+..+..+++..++++++|++|+
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhccc-cccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            35688999999998875  78888 999999999999986655  77889999987766577788777789999999999


Q ss_pred             ccCCcccccc-chhhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCC
Q 040192          108 LSGAIRLYSF-PLGISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGY  185 (386)
Q Consensus       108 l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  185 (386)
                      ++++ .+..+ +..+..+++|+.+++++|.++.+| ..+..+++|+.|++++| .+..++..++..+++|+.+++.+|.+
T Consensus       112 l~~n-~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N~l  189 (284)
T d1ozna_         112 LDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRV  189 (284)
T ss_dssp             CTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCc-ccccccccccchhcccchhhhccccccccChhHhccccchhhcccccC-cccccchhhhccccccchhhhhhccc
Confidence            9999 66655 456778899999999999999886 45778899999999999 66778777789999999999999987


Q ss_pred             ccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCC
Q 040192          186 SYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCK  263 (386)
Q Consensus       186 ~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  263 (386)
                      .+.                     .+..+..+++|++|++++|+... .....+.         .+++|++|++++|+
T Consensus       190 ~~i---------------------~~~~f~~l~~L~~L~l~~N~i~~-~~~~~~~---------~~~~L~~L~l~~N~  236 (284)
T d1ozna_         190 AHV---------------------HPHAFRDLGRLMTLYLFANNLSA-LPTEALA---------PLRALQYLRLNDNP  236 (284)
T ss_dssp             CEE---------------------CTTTTTTCTTCCEEECCSSCCSC-CCHHHHT---------TCTTCCEEECCSSC
T ss_pred             ccc---------------------ChhHhhhhhhccccccccccccc-ccccccc---------cccccCEEEecCCC
Confidence            765                     23456678899999999987765 4455554         78999999999985

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.4e-16  Score=140.02  Aligned_cols=223  Identities=19%  Similarity=0.216  Sum_probs=150.5

Q ss_pred             EEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCC--cccHhhhccCCCCEEEccC
Q 040192           80 TLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIA--ELPKELNALVNLTCLNLEE  157 (386)
Q Consensus        80 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~  157 (386)
                      +++++++....+....+...  ....+.+... .............+|++|+++++.++  .+...+..+++|++|++++
T Consensus         4 ~lDLs~~~l~~~~l~~l~~~--~~~~lrl~~~-~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           4 TLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             EEECTTCBCCHHHHHHHHHT--TCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             EEECCCCCCCchHHHHHHhc--cceEeecccc-ccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            67777652212222222221  2334444443 33322223345678999999999876  4556678999999999999


Q ss_pred             CccccccchhhhcCCCCCcEEEEeccC-CccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhc
Q 040192          158 TWRLTVIPRRLISSFSSLHVLRIFGSG-YSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKM  236 (386)
Q Consensus       158 ~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  236 (386)
                      |......... +..+++|++|++++|. +++. +.                   ......+++|++|++++|....+...
T Consensus        81 ~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~-~l-------------------~~l~~~~~~L~~L~ls~c~~~~~~~~  139 (284)
T d2astb2          81 LRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEF-AL-------------------QTLLSSCSRLDELNLSWCFDFTEKHV  139 (284)
T ss_dssp             CBCCHHHHHH-HTTCTTCSEEECTTCBSCCHH-HH-------------------HHHHHHCTTCCEEECCCCTTCCHHHH
T ss_pred             cCCCcHHHHH-HhcCCCCcCcccccccccccc-cc-------------------chhhHHHHhccccccccccccccccc
Confidence            9544444443 7889999999999863 3322 00                   11134578999999999876654322


Q ss_pred             c-cccccccCccccccCcccEEEecCCC-CCCc--ccc-ccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccce
Q 040192          237 D-YKSVVQNTGQSFVFHSLKKFQISYCK-ELKD--LTF-LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHF  311 (386)
Q Consensus       237 ~-~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~--~~~-l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~  311 (386)
                      . .+..        .+++|++|++++|. .+++  +.. ...+|+|++|++++|..+++...       ..+..+++|++
T Consensus       140 ~~~~~~--------~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~-------~~l~~~~~L~~  204 (284)
T d2astb2         140 QVAVAH--------VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-------QEFFQLNYLQH  204 (284)
T ss_dssp             HHHHHH--------SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-------GGGGGCTTCCE
T ss_pred             hhhhcc--------cccccchhhhcccccccccccccccccccccccccccccccCCCchhh-------hhhcccCcCCE
Confidence            2 2221        56899999999974 3554  222 35689999999999998886655       26678899999


Q ss_pred             eeecccccccccc-CCCcCCCCccEEeecCc
Q 040192          312 LCFSYLPNLKSIY-RKPLPFPHLKEMKVIHC  341 (386)
Q Consensus       312 L~l~~~~~l~~~~-~~~~~~~~L~~L~i~~c  341 (386)
                      |++++|..+.+-. .....+|+|+.|++++|
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            9999998876533 24567999999999998

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=3.1e-15  Score=124.05  Aligned_cols=146  Identities=21%  Similarity=0.346  Sum_probs=79.0

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCc
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI  112 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  112 (386)
                      ...+.+.+.++.+++.+..++ +|++|++++|.++++++...+++|+.|++++| .+..++.  +..++.|+.|+++++ 
T Consensus        42 l~~L~l~~~~i~~l~~l~~l~-nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~~-  116 (199)
T d2omxa2          42 VTTLQADRLGIKSIDGVEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNN-  116 (199)
T ss_dssp             CCEEECTTSCCCCCTTGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECCSS-
T ss_pred             CCEEECCCCCCCCccccccCC-CcCcCccccccccCcccccCCccccccccccc-ccccccc--ccccccccccccccc-
Confidence            344555555555555555555 66666666665555555555566666666555 4444432  455566666666555 


Q ss_pred             cccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192          113 RLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       113 ~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      .....+ .+..+++|+.|++++|.+..++ .+..+++|+.|++.+| .+..++.  ++++++|++|++++|.+++.
T Consensus       117 ~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n-~l~~l~~--l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         117 QITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSN-QVTDLKP--LANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             CCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             cccccc-ccchhhhhHHhhhhhhhhcccc-cccccccccccccccc-cccCCcc--ccCCCCCCEEECCCCCCCCC
Confidence            333322 3445556666666666555443 3455556666666655 3344443  55566666666666555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3e-15  Score=128.16  Aligned_cols=107  Identities=23%  Similarity=0.383  Sum_probs=71.9

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      ...+.+.+.++..+|.  .++.++++|++++|.+..++..  .++++|++|++++|.....++...|.+++.++++.+..
T Consensus        10 ~~~i~c~~~~l~~iP~--~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SSEEEEESCSCSSCCS--CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CCEEEEeCCCCCCcCC--CCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            4578888888888875  2233788888888888876653  67888888888887443445555567777777777654


Q ss_pred             Ccccccc-chhhcCCCccCEEEcCCCCCCccc
Q 040192          111 AIRLYSF-PLGISKLISLQHLDLSNTGIAELP  141 (386)
Q Consensus       111 ~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~  141 (386)
                      +..+... +..+..+++|+.++++++.+...+
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~  119 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLP  119 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCC
T ss_pred             cccccccccccccccccccccccchhhhcccc
Confidence            4344433 345566777777777776665443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9.8e-15  Score=124.89  Aligned_cols=226  Identities=15%  Similarity=0.158  Sum_probs=126.6

Q ss_pred             cEEecccCcCCCcCChhhhcCCCcCceecccCCccccccch-hhcCCCccCEEEcCCCCCCc-cc-HhhhccCCCCEEEc
Q 040192           79 RTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPL-GISKLISLQHLDLSNTGIAE-LP-KELNALVNLTCLNL  155 (386)
Q Consensus        79 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~-l~-~~~~~l~~L~~L~l  155 (386)
                      +.++.++. .+..+|.+++   +++++|+++++ .+..+|. .|.++++|++|++++|.+.. ++ ..+..+++++.+.+
T Consensus        11 ~~i~c~~~-~l~~iP~~l~---~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          11 RVFLCQES-KVTEIPSDLP---RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SEEEEESC-SCSSCCSCSC---SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CEEEEeCC-CCCCcCCCCC---CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            44555544 4555554422   35666666666 6665543 45666777777777766553 22 23556677777776


Q ss_pred             cCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchh
Q 040192          156 EETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELK  235 (386)
Q Consensus       156 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  235 (386)
                      ..+..+...+...+..+++|++++++++.+........+..                    ++.+..+...++. +..+.
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~--------------------l~~l~~~~~~n~~-l~~i~  144 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS--------------------LQKVLLDIQDNIN-IHTIE  144 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCB--------------------SSCEEEEEESCTT-CCEEC
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccc--------------------ccccccccccccc-ccccc
Confidence            55445555555557778888888888776655422222211                    2223222222222 22222


Q ss_pred             cccccccccCccccccCcccEEEecCCCCCCcccc-ccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeee
Q 040192          236 MDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF-LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCF  314 (386)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  314 (386)
                      ...+..        ....++.|.+.++ .++.++. ....++++.+....++.+++++.       ..+..+++|++|++
T Consensus       145 ~~~~~~--------~~~~l~~L~l~~n-~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~-------~~f~~l~~L~~L~L  208 (242)
T d1xwdc1         145 RNSFVG--------LSFESVILWLNKN-GIQEIHNCAFNGTQLDELNLSDNNNLEELPN-------DVFHGASGPVILDI  208 (242)
T ss_dssp             TTSSTT--------SBSSCEEEECCSS-CCCEECTTTTTTCCEEEEECTTCTTCCCCCT-------TTTTTSCCCSEEEC
T ss_pred             cccccc--------ccccceeeecccc-cccccccccccchhhhccccccccccccccH-------HHhcCCCCCCEEEC
Confidence            223221        2346777777766 4554432 23345666665555566776655       25677788888888


Q ss_pred             ccccccccccCCCcCCCCccEEeecCcccCcCCCC
Q 040192          315 SYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPL  349 (386)
Q Consensus       315 ~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~  349 (386)
                      +++ ++++++.  ..|.+|..|..-++.+++++|.
T Consensus       209 s~N-~l~~l~~--~~~~~l~~L~~l~~~~l~~lp~  240 (242)
T d1xwdc1         209 SRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPT  240 (242)
T ss_dssp             TTS-CCCCCCS--SSCTTCCEEESSSEESSSCSCC
T ss_pred             CCC-cCCccCH--HHHcCCcccccCcCCCCCcCCC
Confidence            887 5666653  3366666666656666777663

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.51  E-value=1.8e-12  Score=116.50  Aligned_cols=268  Identities=21%  Similarity=0.231  Sum_probs=154.0

Q ss_pred             cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192           32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA  111 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  111 (386)
                      ....+.++++.+.++|+.  .. +|++|.+++|.++.++...  +.|++|++++| .+..++.  ++.+++|++|++.++
T Consensus        59 ~L~~L~Ls~N~l~~lp~~--~~-~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n-~l~~lp~--~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          59 HLESLVASCNSLTELPEL--PQ-SLKSLLVDNNNLKALSDLP--PLLEYLGVSNN-QLEKLPE--LQNSSFLKIIDVDNN  130 (353)
T ss_dssp             TCSEEECCSSCCSSCCCC--CT-TCCEEECCSSCCSCCCSCC--TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCCCcccccc--hh-hhhhhhhhhcccchhhhhc--ccccccccccc-ccccccc--hhhhccceeeccccc
Confidence            467889999999999864  34 8999999999988776532  46999999999 7888875  578999999999888


Q ss_pred             ccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCc-------------------cccccchhhhcCC
Q 040192          112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETW-------------------RLTVIPRRLISSF  172 (386)
Q Consensus       112 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~-------------------~~~~~~~~~l~~l  172 (386)
                       .+...+..   ...+..+.+..+..... ..+..++.++.+++..+.                   .+..++.  ...+
T Consensus       131 -~~~~~~~~---~~~l~~l~~~~~~~~~~-~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~l  203 (353)
T d1jl5a_         131 -SLKKLPDL---PPSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE--LQNL  203 (353)
T ss_dssp             -CCSCCCCC---CTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC--CTTC
T ss_pred             -cccccccc---cccccchhhcccccccc-ccccccccceeccccccccccccccccccccccccccccccccc--cccc
Confidence             55544322   23344444444332221 122334444444444332                   2233333  4567


Q ss_pred             CCCcEEEEeccCCccccCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCcc--chhccccc----ccccC
Q 040192          173 SSLHVLRIFGSGYSYSDGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLA--ELKMDYKS----VVQNT  245 (386)
Q Consensus       173 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~----~~~~~  245 (386)
                      +.|+.++++++.....  ......+..+. .......    .....+.+....+..+....  ........    .....
T Consensus       204 ~~L~~l~l~~n~~~~~--~~~~~~l~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  277 (353)
T d1jl5a_         204 PFLTTIYADNNLLKTL--PDLPPSLEALNVRDNYLTD----LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR  277 (353)
T ss_dssp             TTCCEEECCSSCCSSC--CSCCTTCCEEECCSSCCSC----CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCS
T ss_pred             cccccccccccccccc--ccccccccccccccccccc----cccccccccccccccccccccccccchhcccccccCccc
Confidence            7788888877765544  11222222222 0000000    00011222222222211100  00000000    00000


Q ss_pred             ccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccC
Q 040192          246 GQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYR  325 (386)
Q Consensus       246 ~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  325 (386)
                      +....+++|+.|++++| .++.++  ..+++|+.|++++|. +++++.           .+++|++|++++|+ ++++|.
T Consensus       278 ~~~~~~~~L~~L~Ls~N-~l~~lp--~~~~~L~~L~L~~N~-L~~l~~-----------~~~~L~~L~L~~N~-L~~lp~  341 (353)
T d1jl5a_         278 SLCDLPPSLEELNVSNN-KLIELP--ALPPRLERLIASFNH-LAEVPE-----------LPQNLKQLHVEYNP-LREFPD  341 (353)
T ss_dssp             EECCCCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-----------CCTTCCEEECCSSC-CSSCCC
T ss_pred             cccccCCCCCEEECCCC-ccCccc--cccCCCCEEECCCCc-CCcccc-----------ccCCCCEEECcCCc-CCCCCc
Confidence            00015789999999999 577766  347899999999864 776532           35689999999995 888875


Q ss_pred             CCcCCCCccEEeec
Q 040192          326 KPLPFPHLKEMKVI  339 (386)
Q Consensus       326 ~~~~~~~L~~L~i~  339 (386)
                      ..   ++|+.|.+.
T Consensus       342 ~~---~~L~~L~~~  352 (353)
T d1jl5a_         342 IP---ESVEDLRMN  352 (353)
T ss_dssp             CC---TTCCEEECC
T ss_pred             cc---cccCeeECc
Confidence            33   457776664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=3.2e-13  Score=102.32  Aligned_cols=118  Identities=25%  Similarity=0.305  Sum_probs=81.6

Q ss_pred             cEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCC
Q 040192           57 RRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTG  136 (386)
Q Consensus        57 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  136 (386)
                      |.|++++|+++.++....+++|+.|++++| .+..+|+. ++.+++|++|++++| .+..+| .++.+++|+++++++|.
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N-~l~~lp~~-~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHN-RLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSS-CCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCC-ccCcchhh-hhhhhcccccccccc-cccccC-ccccccccCeEECCCCc
Confidence            467777887777776677778888888877 67777665 567788888888777 777665 46777788888888887


Q ss_pred             CCccc--HhhhccCCCCEEEccCCccc--cccchhhhcCCCCCcEE
Q 040192          137 IAELP--KELNALVNLTCLNLEETWRL--TVIPRRLISSFSSLHVL  178 (386)
Q Consensus       137 i~~l~--~~~~~l~~L~~L~l~~~~~~--~~~~~~~l~~l~~L~~L  178 (386)
                      ++.++  ..+..+++|+.+++++|+..  ...+..+...+++|+.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            77655  34667777778887777432  12333334556666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.3e-13  Score=108.41  Aligned_cols=129  Identities=23%  Similarity=0.282  Sum_probs=102.2

Q ss_pred             CcccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchh-hcCC
Q 040192           47 PDVRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLG-ISKL  124 (386)
Q Consensus        47 p~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l  124 (386)
                      |.+.... ++++|++++|+++.++.. ..+++|+.|++++| .+..++.  +..+++|++|++++| .+..+++. +..+
T Consensus        12 ~~~~n~~-~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~~--~~~l~~L~~L~ls~N-~i~~l~~~~~~~l   86 (162)
T d1a9na_          12 AQYTNAV-RDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLDG--FPLLRRLKTLLVNNN-RICRIGEGLDQAL   86 (162)
T ss_dssp             CEEECTT-SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEECC--CCCCSSCCEEECCSS-CCCEECSCHHHHC
T ss_pred             HhccCcC-cCcEEECCCCCCCccCccccccccCCEEECCCC-CCCccCC--cccCcchhhhhcccc-cccCCCccccccc
Confidence            4455555 889999999999988776 67899999999999 7777754  788999999999999 88877654 4678


Q ss_pred             CccCEEEcCCCCCCcccH--hhhccCCCCEEEccCCccccccc---hhhhcCCCCCcEEEEe
Q 040192          125 ISLQHLDLSNTGIAELPK--ELNALVNLTCLNLEETWRLTVIP---RRLISSFSSLHVLRIF  181 (386)
Q Consensus       125 ~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~  181 (386)
                      ++|+.|++++|.++.++.  .+..+++|++|++++|+ +...+   ..++..+++|+.|+-.
T Consensus        87 ~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          87 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccccceeccccccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence            999999999999887753  56788999999999994 44444   2347788999988733

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=5e-13  Score=101.24  Aligned_cols=104  Identities=23%  Similarity=0.310  Sum_probs=91.3

Q ss_pred             cEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCC
Q 040192           79 RTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEET  158 (386)
Q Consensus        79 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~  158 (386)
                      |.|++++| .+..++.  ++.+++|++|++++| .++.+|+.++.+++|+.|++++|.++.+| .++.+++|+.|++++|
T Consensus         1 R~L~Ls~n-~l~~l~~--l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTS-CCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCC-CCCCCcc--cccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCC
Confidence            67999999 8888875  789999999999999 99999888999999999999999999986 4889999999999999


Q ss_pred             ccccccch-hhhcCCCCCcEEEEeccCCccc
Q 040192          159 WRLTVIPR-RLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       159 ~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                       .+..++. ..++.+++|+.|++++|++...
T Consensus        76 -~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 -RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             -CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             -ccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence             5555553 3478999999999999988765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.38  E-value=1.5e-12  Score=106.82  Aligned_cols=124  Identities=24%  Similarity=0.290  Sum_probs=82.6

Q ss_pred             ccEEEEcCCCCCCCCcccccccCccEEEecCCcccc-cCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192           33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIEN-LSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS  109 (386)
Q Consensus        33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  109 (386)
                      ...+.+++.++..+|.  .+++++++|++++|.++. ++..  ..+++|+.|++++| .+..++...+..++.|++|+++
T Consensus        10 ~~~v~Cs~~~L~~iP~--~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPR--DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCS--CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccCC--CCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccc-ccccccccccccccccceeeec
Confidence            3467888888888875  233478888888888765 3222  56777777777777 5665555556677777777777


Q ss_pred             CCccccccc-hhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCcc
Q 040192          110 GAIRLYSFP-LGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWR  160 (386)
Q Consensus       110 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~  160 (386)
                      +| .+..++ ..|.++++|++|++++|.++.++. .+..+++|+++++++|+.
T Consensus        87 ~N-~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          87 EN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             SC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cc-cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            77 666653 356667777777777777766653 345666666666666643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.4e-12  Score=103.63  Aligned_cols=122  Identities=21%  Similarity=0.344  Sum_probs=106.2

Q ss_pred             cccEEEEcCCCCCCCCcc-cccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192           32 KEEHLVYAGAGLSETPDV-RKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG  110 (386)
Q Consensus        32 ~~~~l~~~~~~l~~~p~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  110 (386)
                      +.+.+++.+..+..++.+ ..++ +|++|++++|.+..++....+++|++|++++| .+..+++.++..+++|++|++++
T Consensus        19 ~lr~L~L~~n~I~~i~~~~~~l~-~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~L~L~~   96 (162)
T d1a9na_          19 RDRELDLRGYKIPVIENLGATLD-QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTN   96 (162)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTT-CCSEEECCSSCCCEECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCS
T ss_pred             cCcEEECCCCCCCccCccccccc-cCCEEECCCCCCCccCCcccCcchhhhhcccc-cccCCCccccccccccccceecc
Confidence            456799999999999875 4566 99999999999999988899999999999999 88888887778899999999999


Q ss_pred             Cccccccc--hhhcCCCccCEEEcCCCCCCcccH----hhhccCCCCEEEcc
Q 040192          111 AIRLYSFP--LGISKLISLQHLDLSNTGIAELPK----ELNALVNLTCLNLE  156 (386)
Q Consensus       111 ~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~l~~----~~~~l~~L~~L~l~  156 (386)
                      | .+..++  ..+..+++|++|++++|.++..|.    .+..+++|+.|+-.
T Consensus        97 N-~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          97 N-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             C-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             c-cccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            9 888765  357889999999999999987763    57889999999743

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=4.4e-12  Score=103.98  Aligned_cols=129  Identities=20%  Similarity=0.294  Sum_probs=109.7

Q ss_pred             ccEEEecCCcccccCCCCCCCCCcEEecccCcCCC-cCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcC
Q 040192           56 VRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLR-RIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLS  133 (386)
Q Consensus        56 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~  133 (386)
                      .++++.+++.++.+|..- .+++++|++++| .+. .++...|..+++|+.|+++++ .+..+ +..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI-PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccCCCC-CCCCCEEEeCCC-CCcccccccccCCCceEeeeecccc-ccccccccccccccccceeeec
Confidence            457888899998887642 378999999999 665 466666899999999999999 77765 5678889999999999


Q ss_pred             CCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192          134 NTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       134 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      +|.++.++. .+..+++|++|++++| .+..++..++..+++|++|++++|.+...
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cccccccCHHHHhCCCcccccccCCc-cccccCHHHhcCCcccccccccccccccc
Confidence            999998875 5788999999999999 67888887799999999999999977654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=9.1e-13  Score=108.53  Aligned_cols=110  Identities=23%  Similarity=0.263  Sum_probs=71.1

Q ss_pred             CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCE
Q 040192           73 PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTC  152 (386)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~  152 (386)
                      ..+++|+.|++++| .++.++.  +..+++|++|++++| .+..++.....+++|+.|++++|.++.++ .+..+++|+.
T Consensus        45 ~~L~~L~~L~Ls~n-~I~~i~~--l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~  119 (198)
T d1m9la_          45 STLKACKHLALSTN-NIEKISS--LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV  119 (198)
T ss_dssp             HHTTTCCEEECSEE-EESCCCC--HHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSE
T ss_pred             hcccccceeECccc-CCCCccc--ccCCccccChhhccc-ccccccccccccccccccccccccccccc-cccccccccc
Confidence            55667777777766 5666543  566777777777776 66666544445566777777777777663 4566777777


Q ss_pred             EEccCCccccccch-hhhcCCCCCcEEEEeccCCccc
Q 040192          153 LNLEETWRLTVIPR-RLISSFSSLHVLRIFGSGYSYS  188 (386)
Q Consensus       153 L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~  188 (386)
                      |++++| .+..++. ..+..+++|+.|++++|++...
T Consensus       120 L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         120 LYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccc-hhccccccccccCCCccceeecCCCccccC
Confidence            777777 4444432 2266777777777777765543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=1.3e-12  Score=107.67  Aligned_cols=138  Identities=25%  Similarity=0.295  Sum_probs=109.8

Q ss_pred             CCCCCC-cccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchh
Q 040192           42 GLSETP-DVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLG  120 (386)
Q Consensus        42 ~l~~~p-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  120 (386)
                      .+..++ ++..++ +|++|++++|.++.++....+++|+.|++++| .+..++.. +..++.|++|++++| .+..++ .
T Consensus        36 ~i~~l~~sl~~L~-~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N-~i~~i~~~-~~~~~~L~~L~l~~N-~i~~l~-~  110 (198)
T d1m9la_          36 PIEKMDATLSTLK-ACKHLALSTNNIEKISSLSGMENLRILSLGRN-LIKKIENL-DAVADTLEELWISYN-QIASLS-G  110 (198)
T ss_dssp             TCCCCHHHHHHTT-TCCEEECSEEEESCCCCHHHHTTCCEEECCEE-EECSCSSH-HHHHHHCCEEECSEE-ECCCHH-H
T ss_pred             chhhhhhHHhccc-ccceeECcccCCCCcccccCCccccChhhccc-cccccccc-ccccccccccccccc-cccccc-c
Confidence            344554 377788 99999999999999987789999999999999 78887753 456778999999999 888764 5


Q ss_pred             hcCCCccCEEEcCCCCCCccc--HhhhccCCCCEEEccCCccccccch---------hhhcCCCCCcEEEEeccCCc
Q 040192          121 ISKLISLQHLDLSNTGIAELP--KELNALVNLTCLNLEETWRLTVIPR---------RLISSFSSLHVLRIFGSGYS  186 (386)
Q Consensus       121 ~~~l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~---------~~l~~l~~L~~L~l~~~~~~  186 (386)
                      +..+++|++|++++|.++.++  ..+..+++|+.|++++|+.....+.         .++..+++|+.||  +..++
T Consensus       111 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             ccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            778999999999999999876  3578999999999999964333221         1356789999886  44444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.6e-11  Score=112.61  Aligned_cols=89  Identities=15%  Similarity=0.134  Sum_probs=51.8

Q ss_pred             cCcccEEEecCCCCCCcc--c----cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccccccc--
Q 040192          251 FHSLKKFQISYCKELKDL--T----FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKS--  322 (386)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~--~----~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--  322 (386)
                      ...|+.+.+++|. ++..  .    .....++|++|+|+++. +++.....-..  ......+.|++|+|++| .+.+  
T Consensus       311 ~~~L~~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~--~l~~~~~~L~~L~Ls~n-~i~~~~  385 (460)
T d1z7xw1         311 GCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQ--GLGQPGSVLRVLWLADC-DVSDSS  385 (460)
T ss_dssp             TCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHH--HHTSTTCCCCEEECTTS-CCCHHH
T ss_pred             ccccccccccccc-hhhhhhhhcccccccccchhhhheeeec-ccCcccchhhh--hhhcccCCCCEEECCCC-CCChHH
Confidence            4578888888873 4432  1    12345788888888864 55422110000  01123567889999988 5543  


Q ss_pred             ---ccCCCcCCCCccEEeecCcccCc
Q 040192          323 ---IYRKPLPFPHLKEMKVIHCLKLK  345 (386)
Q Consensus       323 ---~~~~~~~~~~L~~L~i~~c~~L~  345 (386)
                         +......+++|++|+|+++ +++
T Consensus       386 ~~~l~~~l~~~~~L~~L~Ls~N-~i~  410 (460)
T d1z7xw1         386 CSSLAATLLANHSLRELDLSNN-CLG  410 (460)
T ss_dssp             HHHHHHHHHHCCCCCEEECCSS-SCC
T ss_pred             HHHHHHHHhcCCCCCEEECCCC-cCC
Confidence               2222344788999999874 444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1e-09  Score=86.09  Aligned_cols=85  Identities=20%  Similarity=0.238  Sum_probs=38.8

Q ss_pred             CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcCCCCCCcccHhhhccCCCC
Q 040192           73 PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLSNTGIAELPKELNALVNLT  151 (386)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~  151 (386)
                      ..+++|+.|++.++..+..++...|.++++|+.|++++| .+..+ +.+|..+++|++|++++|.++.+|..+....+|+
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~  106 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ  106 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred             cCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceeccCCCCcccChhhhcccccc
Confidence            334444444444332344444444444555555555544 44444 2334444555555555555544443333333444


Q ss_pred             EEEccCC
Q 040192          152 CLNLEET  158 (386)
Q Consensus       152 ~L~l~~~  158 (386)
                      .|++++|
T Consensus       107 ~L~L~~N  113 (156)
T d2ifga3         107 ELVLSGN  113 (156)
T ss_dssp             EEECCSS
T ss_pred             ccccCCC
Confidence            4444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.96  E-value=4.1e-10  Score=100.80  Aligned_cols=190  Identities=15%  Similarity=0.076  Sum_probs=96.8

Q ss_pred             hcCCCccCEEEcCCCCCCc-----ccHhhhccCCCCEEEccCCccccc----cch--------hhhcCCCCCcEEEEecc
Q 040192          121 ISKLISLQHLDLSNTGIAE-----LPKELNALVNLTCLNLEETWRLTV----IPR--------RLISSFSSLHVLRIFGS  183 (386)
Q Consensus       121 ~~~l~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~----~~~--------~~l~~l~~L~~L~l~~~  183 (386)
                      +..+++|+.|++++|.++.     +...+..+++|++|++++|.....    +..        ......+.|+.+.++++
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            3445666666666665542     223344556666666666632110    000        01234567777777776


Q ss_pred             CCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchh----cccccccccCccccccCcccEEEe
Q 040192          184 GYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELK----MDYKSVVQNTGQSFVFHSLKKFQI  259 (386)
Q Consensus       184 ~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~~L~l  259 (386)
                      .+.......                 ....+..+++|+.|++++|.....-.    ...+.         .+++|+.|++
T Consensus       169 ~i~~~~~~~-----------------l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~---------~~~~L~~L~L  222 (344)
T d2ca6a1         169 RLENGSMKE-----------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA---------YCQELKVLDL  222 (344)
T ss_dssp             CCTGGGHHH-----------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG---------GCTTCCEEEC
T ss_pred             ccccccccc-----------------ccchhhhhhhhcccccccccccccccccchhhhhc---------chhhhccccc
Confidence            554431000                 01234445677777777775543211    11121         5677888888


Q ss_pred             cCCCCCCcc------ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccccccc-----ccCCC-
Q 040192          260 SYCKELKDL------TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKS-----IYRKP-  327 (386)
Q Consensus       260 ~~~~~l~~~------~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~-  327 (386)
                      ++|. +++.      ..+..+++|++|+|++|. +.+.....-... ..-...+.|++|+++++ .+..     +.... 
T Consensus       223 s~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~-l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~  298 (344)
T d2ca6a1         223 QDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDA-FSKLENIGLQTLRLQYN-EIELDAVRTLKTVID  298 (344)
T ss_dssp             CSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHH-HHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHH
T ss_pred             cccc-ccccccccccccccccccchhhhhhcCc-cCchhhHHHHHH-hhhccCCCCCEEECCCC-cCChHHHHHHHHHHH
Confidence            7773 4331      234567778888887765 443322100000 01123466888888877 3432     11111 


Q ss_pred             cCCCCccEEeecC
Q 040192          328 LPFPHLKEMKVIH  340 (386)
Q Consensus       328 ~~~~~L~~L~i~~  340 (386)
                      ..+++|+.|++++
T Consensus       299 ~~~~~L~~L~l~~  311 (344)
T d2ca6a1         299 EKMPDLLFLELNG  311 (344)
T ss_dssp             HHCTTCCEEECTT
T ss_pred             ccCCCCCEEECCC
Confidence            2467788887766

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.4e-09  Score=83.08  Aligned_cols=110  Identities=15%  Similarity=0.129  Sum_probs=89.2

Q ss_pred             CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc-hhhcCCCccCEEEcCCCCCCccc-HhhhccCCC
Q 040192           73 PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLSNTGIAELP-KELNALVNL  150 (386)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L  150 (386)
                      ..+.....++.+++ ...+.+.. +..+++|++|++.++..++.++ .+|.++++|+.|++++|.++.++ ..+..+++|
T Consensus         5 C~c~~~~~l~c~~~-~~~~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L   82 (156)
T d2ifga3           5 CCPHGSSGLRCTRD-GALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL   82 (156)
T ss_dssp             SCCSSSSCEECCSS-CCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred             CCcCCCCeEEecCC-CCccCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccc
Confidence            34556677888877 56666666 6789999999998774688774 57899999999999999999885 557899999


Q ss_pred             CEEEccCCccccccchhhhcCCCCCcEEEEeccCCc
Q 040192          151 TCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYS  186 (386)
Q Consensus       151 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  186 (386)
                      +.|++++| .+..++..++... +|+.|++++|++.
T Consensus        83 ~~L~Ls~N-~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          83 SRLNLSFN-ALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CEEECCSS-CCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             cceeccCC-CCcccChhhhccc-cccccccCCCccc
Confidence            99999999 6678888755544 7999999999774

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.80  E-value=5.4e-09  Score=93.33  Aligned_cols=236  Identities=15%  Similarity=0.113  Sum_probs=153.1

Q ss_pred             ccccccCccEEEecCCcccc-----cC-CCCCCCCCcEEecccCcCCCcC----C------hhhhcCCCcCceecccCCc
Q 040192           49 VRKWEKNVRRLSLMENQIEN-----LS-EVPTCPYLRTLFLNNNAPLRRI----D------SGFFQSMPRLNVLNLSGAI  112 (386)
Q Consensus        49 ~~~~~~~L~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~~~~~~----~------~~~~~~l~~L~~L~l~~~~  112 (386)
                      +.... .++.|++++|.+..     +. .....++|+.+.++++ .....    +      ...+..+++|+.|++++| 
T Consensus        27 L~~~~-~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n-  103 (344)
T d2ca6a1          27 LLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-  103 (344)
T ss_dssp             HHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-
T ss_pred             HhhCC-CCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCC-cccccccccchHHHHHHHHHhhCCCccccccccc-
Confidence            45556 89999999998765     22 2267899999999877 33221    1      122457899999999988 


Q ss_pred             cccc-----cchhhcCCCccCEEEcCCCCCCcc-----cH---------hhhccCCCCEEEccCCccccc----cchhhh
Q 040192          113 RLYS-----FPLGISKLISLQHLDLSNTGIAEL-----PK---------ELNALVNLTCLNLEETWRLTV----IPRRLI  169 (386)
Q Consensus       113 ~~~~-----~~~~~~~l~~L~~L~l~~~~i~~l-----~~---------~~~~l~~L~~L~l~~~~~~~~----~~~~~l  169 (386)
                      .++.     +...+...++|+.|++++|.+...     ..         .....+.|+.+.++++.....    +.. .+
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~-~l  182 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK-TF  182 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH-HH
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccc-hh
Confidence            6653     344556789999999999976411     01         123567899999998843221    222 25


Q ss_pred             cCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchh---cccccccccCc
Q 040192          170 SSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELK---MDYKSVVQNTG  246 (386)
Q Consensus       170 ~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~~  246 (386)
                      ..+..|+.|+++.|.+...+....                ....+..+++|+.|++++|.....-.   ...+.      
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~----------------l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~------  240 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHL----------------LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK------  240 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHH----------------HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG------
T ss_pred             hhhhhhcccccccccccccccccc----------------hhhhhcchhhhccccccccccccccccccccccc------
Confidence            678899999999988765411000                02335667899999999886533211   12222      


Q ss_pred             cccccCcccEEEecCCCCCCcc--c----ccc--CCCCCcEEeecCCCccchhhccCcccccCCC-Ccccccceeeeccc
Q 040192          247 QSFVFHSLKKFQISYCKELKDL--T----FLI--FAPNLKSIEVDSCYALEEIVSDVPEVMMGNL-NPFAQFHFLCFSYL  317 (386)
Q Consensus       247 ~~~~~~~L~~L~l~~~~~l~~~--~----~l~--~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~  317 (386)
                         .+++|++|++++| .+++-  .    .+.  ..+.|++|+|++|. ++.-....-.   ..+ ..+++|++|+|+++
T Consensus       241 ---~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~---~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         241 ---SWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLK---TVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             ---GCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHH---HHHHHHCTTCCEEECTTS
T ss_pred             ---ccccchhhhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHH---HHHHccCCCCCEEECCCC
Confidence               6789999999999 46652  1    122  24679999999965 6553221000   012 24678999999987


Q ss_pred             c
Q 040192          318 P  318 (386)
Q Consensus       318 ~  318 (386)
                      .
T Consensus       313 ~  313 (344)
T d2ca6a1         313 R  313 (344)
T ss_dssp             B
T ss_pred             c
Confidence            4

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.9e-09  Score=98.38  Aligned_cols=104  Identities=22%  Similarity=0.317  Sum_probs=79.2

Q ss_pred             CccEEEecCCcccc--cCCC-CCCCCCcEEecccCcCCCcCC----hhhhcCCCcCceecccCCccccc-----cchhhc
Q 040192           55 NVRRLSLMENQIEN--LSEV-PTCPYLRTLFLNNNAPLRRID----SGFFQSMPRLNVLNLSGAIRLYS-----FPLGIS  122 (386)
Q Consensus        55 ~L~~L~l~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~  122 (386)
                      +|+.|+++++.+++  +... ..++++++|++++| .+++..    ..++..+++|++|++++| .++.     +...+.
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHh
Confidence            68999999999988  3333 78999999999999 565322    233578999999999998 7753     222222


Q ss_pred             -CCCccCEEEcCCCCCCc-----ccHhhhccCCCCEEEccCCcc
Q 040192          123 -KLISLQHLDLSNTGIAE-----LPKELNALVNLTCLNLEETWR  160 (386)
Q Consensus       123 -~l~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~  160 (386)
                       ...+|+.|++++|.++.     ++..+..+++|+.|++++|..
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence             23579999999999873     345567889999999999953

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=9.2e-07  Score=69.25  Aligned_cols=42  Identities=33%  Similarity=0.445  Sum_probs=18.8

Q ss_pred             CCCcCceecccCCcccccc---chhhcCCCccCEEEcCCCCCCccc
Q 040192           99 SMPRLNVLNLSGAIRLYSF---PLGISKLISLQHLDLSNTGIAELP  141 (386)
Q Consensus        99 ~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~l~  141 (386)
                      .++.|++|++++| .++.+   +..+..+++|+.|++++|.++.++
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~  107 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER  107 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGG
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccch
Confidence            4445555555554 44432   122334444555555554444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=2.6e-06  Score=66.63  Aligned_cols=80  Identities=31%  Similarity=0.351  Sum_probs=59.0

Q ss_pred             CCCCCCcEEecccCcCCCcCCh--hhhcCCCcCceecccCCccccccch-hhcCCCccCEEEcCCCCCCccc--------
Q 040192           73 PTCPYLRTLFLNNNAPLRRIDS--GFFQSMPRLNVLNLSGAIRLYSFPL-GISKLISLQHLDLSNTGIAELP--------  141 (386)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~--------  141 (386)
                      ..+++|++|++++| .+..+++  ..+..+++|++|++++| .++.+++ ......+|+.|++++|.++...        
T Consensus        62 ~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          62 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            57899999999999 7776653  34678999999999999 8887754 2334457899999999886432        


Q ss_pred             HhhhccCCCCEEE
Q 040192          142 KELNALVNLTCLN  154 (386)
Q Consensus       142 ~~~~~l~~L~~L~  154 (386)
                      ..+..+++|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            2244567777664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.27  E-value=0.00032  Score=54.52  Aligned_cols=108  Identities=13%  Similarity=0.057  Sum_probs=53.7

Q ss_pred             CCCCCcEEecccCcCCCcCC----hhhhcCCCcCceecccCCccccc-----cchhhcCCCccCEEEcCCCCCCc-----
Q 040192           74 TCPYLRTLFLNNNAPLRRID----SGFFQSMPRLNVLNLSGAIRLYS-----FPLGISKLISLQHLDLSNTGIAE-----  139 (386)
Q Consensus        74 ~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~i~~-----  139 (386)
                      ..+.|+.|+++++..++.-.    ...+...+.|++|++++| .++.     +...+...+.|+.|++++|.++.     
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34556666665432232110    112345556666666666 4442     12334445667777777766652     


Q ss_pred             ccHhhhccCCCCEEEccCCccccccc-------hhhhcCCCCCcEEEEecc
Q 040192          140 LPKELNALVNLTCLNLEETWRLTVIP-------RRLISSFSSLHVLRIFGS  183 (386)
Q Consensus       140 l~~~~~~l~~L~~L~l~~~~~~~~~~-------~~~l~~l~~L~~L~l~~~  183 (386)
                      +-..+...++|++|+++++. ...+.       ..++...++|++|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~-~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQR-QSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCS-SCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCc-CCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            12334455667777776652 11111       112455567777776554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.00  E-value=0.00061  Score=52.80  Aligned_cols=102  Identities=12%  Similarity=0.169  Sum_probs=74.3

Q ss_pred             CccEEEecCC-cccc--cCC----CCCCCCCcEEecccCcCCCcCC----hhhhcCCCcCceecccCCccccc-----cc
Q 040192           55 NVRRLSLMEN-QIEN--LSE----VPTCPYLRTLFLNNNAPLRRID----SGFFQSMPRLNVLNLSGAIRLYS-----FP  118 (386)
Q Consensus        55 ~L~~L~l~~~-~~~~--~~~----~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~-----~~  118 (386)
                      ++++|+++++ .+..  +..    ....++|++|++++| .+++..    ...+...+.|++|++++| .++.     +.
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~~l~   93 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLL   93 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHH
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehh-hcchHHHHHHH
Confidence            8999999874 4554  222    267889999999998 665321    233567899999999999 7763     34


Q ss_pred             hhhcCCCccCEEEcCCCCCCcc--------cHhhhccCCCCEEEccCC
Q 040192          119 LGISKLISLQHLDLSNTGIAEL--------PKELNALVNLTCLNLEET  158 (386)
Q Consensus       119 ~~~~~l~~L~~L~l~~~~i~~l--------~~~~~~l~~L~~L~l~~~  158 (386)
                      .++...+.|+.|+++++.+..+        ...+...++|+.|+++.+
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            4567778899999998866543        344556789999998776

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.56  E-value=0.0021  Score=49.48  Aligned_cols=109  Identities=16%  Similarity=0.161  Sum_probs=58.1

Q ss_pred             CCCCCCcEEecccCcCCCcCC----hhhhcCCCcCceecccCCccccc-----cchhhcCCCccCEEEcCCCCCC-----
Q 040192           73 PTCPYLRTLFLNNNAPLRRID----SGFFQSMPRLNVLNLSGAIRLYS-----FPLGISKLISLQHLDLSNTGIA-----  138 (386)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~i~-----  138 (386)
                      ...+.|+.|.++++..++...    ...+...++|++|++++| .++.     +...+...++++.++++++.++     
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            345566666666532333211    112345666777777766 5442     2334455667777777777664     


Q ss_pred             cccHhhhccCCCCEEEccCCc-cccc-----cchhhhcCCCCCcEEEEecc
Q 040192          139 ELPKELNALVNLTCLNLEETW-RLTV-----IPRRLISSFSSLHVLRIFGS  183 (386)
Q Consensus       139 ~l~~~~~~l~~L~~L~l~~~~-~~~~-----~~~~~l~~l~~L~~L~l~~~  183 (386)
                      .+...+...++|+.+++..+. .+++     +.. ++...++|++|++..+
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCC
Confidence            222445566777766664331 2222     222 2456777777777654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.25  E-value=0.0025  Score=49.08  Aligned_cols=116  Identities=16%  Similarity=0.142  Sum_probs=76.2

Q ss_pred             hhhcCCCcCceecccCCcccc-----ccchhhcCCCccCEEEcCCCCCCc-----ccHhhhccCCCCEEEccCCccccc-
Q 040192           95 GFFQSMPRLNVLNLSGAIRLY-----SFPLGISKLISLQHLDLSNTGIAE-----LPKELNALVNLTCLNLEETWRLTV-  163 (386)
Q Consensus        95 ~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~-  163 (386)
                      .+..+.+.|++|++.+...++     .+..++...++|+.|++++|.++.     +-..+...+.++.+++++|..... 
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            345678999999998753554     234556678999999999998862     224556778999999998844322 


Q ss_pred             ---cchhhhcCCCCCcEEEEec--cCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeecc
Q 040192          164 ---IPRRLISSFSSLHVLRIFG--SGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAEC  228 (386)
Q Consensus       164 ---~~~~~l~~l~~L~~L~l~~--~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~  228 (386)
                         +.. .+...++|+.+++..  +.+.... ..                .....+...++|+.|++..+
T Consensus        91 ~~~l~~-~l~~~~~L~~l~L~l~~n~i~~~~-~~----------------~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          91 ILALVE-ALQSNTSLIELRIDNQSQPLGNNV-EM----------------EIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHH-GGGGCSSCCEEECCCCSSCCCHHH-HH----------------HHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHH-HHHhCccccEEeeccCCCcCcHHH-HH----------------HHHHHHHhCCCcCEEeCcCC
Confidence               222 367778898877754  3333321 00                01234556788888888765